BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045278
         (221 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 6   GYKFQPSNEQILY-LLVEKRLNPHFSHHPIKDIVDICGLEPWDLATESTPESEDQVWYFF 64
           G++F P++E+++   L  K     FS   I +I D+   +PW L  ++    ++  WYFF
Sbjct: 20  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 76

Query: 65  CEPCYKYRESHRAHRRTKAGHWKITSKDSQIKARNGPTGTKKFLTFYRHGLPRKEAITEW 124
                KY    R +R   +G+WK T  D  I       G KK L FY    P K   T W
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAP-KGTKTNW 135

Query: 125 GMHEYHV-----KDDSSYKKEFILCCITRKRNKKKK 155
            MHEY +     ++ S+   +++LC I +K++  +K
Sbjct: 136 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 10/156 (6%)

Query: 6   GYKFQPSNEQILY-LLVEKRLNPHFSHHPIKDIVDICGLEPWDLATESTPESEDQVWYFF 64
           G++F P++E+++   L  K     FS   I +I D+   +PW L  ++    ++  WYFF
Sbjct: 23  GFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEI-DLYKFDPWVLPNKALFGEKE--WYFF 79

Query: 65  CEPCYKYRESHRAHRRTKAGHWKITSKDSQIKARNGPTGTKKFLTFYRHGLPRKEAITEW 124
                KY    R +R   +G+WK T  D  I       G KK L FY    P K   T W
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAP-KGTKTNW 138

Query: 125 GMHEYHV-----KDDSSYKKEFILCCITRKRNKKKK 155
            MHEY +     ++ S+   +++LC I +K++  +K
Sbjct: 139 IMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 74/160 (46%), Gaps = 13/160 (8%)

Query: 6   GYKFQPSNEQILYLLVEKRLNPHFSHHPIKDIVDICGLEPWDLATESTPESEDQVWYFFC 65
           G++F P++++++   + ++        PI   VD+   +PWDL   +   + +  WYFF 
Sbjct: 18  GFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE--WYFFT 75

Query: 66  EPCYKYRESHRAHRRTKAGHWKITSKDSQIKARNGPTGTKKFLTFYRHGLPRKEAITEWG 125
               KY    R +R    G+WK T  D  +  R    G KK L FY    PR    T+W 
Sbjct: 76  PRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG-VKTDWI 134

Query: 126 MHEYHV----------KDDSSYKKEFILCCITRKRNKKKK 155
           MHEY +          K  S    +++LC +  K+N+ +K
Sbjct: 135 MHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,977,468
Number of Sequences: 62578
Number of extensions: 267394
Number of successful extensions: 477
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 4
length of query: 221
length of database: 14,973,337
effective HSP length: 95
effective length of query: 126
effective length of database: 9,028,427
effective search space: 1137581802
effective search space used: 1137581802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)