Query 045278
Match_columns 221
No_of_seqs 178 out of 913
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 20:34:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2.6E-59 9E-64 386.6 15.0 147 1-151 13-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.1E-58 3.9E-63 382.2 13.0 148 1-152 15-168 (171)
3 1ldd_A APC2WHB, anaphase promo 21.2 30 0.001 23.8 0.9 23 3-26 36-59 (74)
4 3nr5_A MAF1, repressor of RNA 20.5 39 0.0013 26.8 1.6 13 34-47 119-131 (164)
5 4dox_A Coat protein; all helix 19.2 38 0.0013 28.3 1.3 23 4-26 156-178 (226)
6 2ehh_A DHDPS, dihydrodipicolin 19.1 32 0.0011 29.2 0.8 17 3-20 102-118 (294)
7 1f6k_A N-acetylneuraminate lya 19.0 32 0.0011 29.2 0.8 17 3-20 106-122 (293)
8 2ojp_A DHDPS, dihydrodipicolin 19.0 32 0.0011 29.1 0.8 17 3-20 103-119 (292)
9 3fkr_A L-2-keto-3-deoxyarabona 18.9 43 0.0015 28.7 1.6 18 3-20 110-129 (309)
10 3cpr_A Dihydrodipicolinate syn 18.8 30 0.001 29.6 0.6 17 3-20 118-134 (304)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2.6e-59 Score=386.58 Aligned_cols=147 Identities=29% Similarity=0.603 Sum_probs=130.9
Q ss_pred CCCCCcceEcCCHHHHHHHHHHHhcC-CCCCCCceeccccCCCCCCccccCCCCCCCCCceEEEEeccccccCCCCCccc
Q 045278 1 MENLMGYKFQPSNEQILYLLVEKRLN-PHFSHHPIKDIVDICGLEPWDLATESTPESEDQVWYFFCEPCYKYRESHRAHR 79 (221)
Q Consensus 1 m~lppGfRF~PTDeELV~~YL~~Ki~-~~~~~~~I~~~~Dvy~~~Pw~Lp~~~~~~~~~~ewYFF~~r~~k~~~g~R~~R 79 (221)
+.|||||||||||||||.|||++|+. .++++.+|. ++|||++|||+||+.+.. ++.+||||+++++||++|.|++|
T Consensus 13 ~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~-evDvy~~~Pw~Lp~~~~~--g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIA-EVDLYKFDPWDLPERALF--GAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp TTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCE-ECCGGGSCGGGSGGGCSS--CSSEEEEEEECCC-----CCSCE
T ss_pred cCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeee-ecccccCCchhhhhhhcc--CCceEEEEeccccccCCCCCcee
Confidence 47999999999999999999999999 566779999 999999999999998753 67899999999999999999999
Q ss_pred cccceeeeecCcCeeeecCCcceeeEEEEEeeecCCCCCCcccCeEEEEEEeCCCCC----------CCCcEEEEEEEEc
Q 045278 80 RTKAGHWKITSKDSQIKARNGPTGTKKFLTFYRHGLPRKEAITEWGMHEYHVKDDSS----------YKKEFILCCITRK 149 (221)
Q Consensus 80 ~t~~G~Wk~tg~~k~I~~~~~~iG~kktl~Fy~g~~p~g~~kT~WvMhEY~l~~~~~----------~~~~~VLCkI~~k 149 (221)
+|++||||+||+++.|..+|.+||+||+|+||.|++|+| .||+|+||||+|..... ..++|||||||+|
T Consensus 90 ~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g-~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K 168 (174)
T 3ulx_A 90 AAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRG-VKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168 (174)
T ss_dssp EETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSC-EEEEEEEEEEEECSCC-----------CCSSEEEEEEEES
T ss_pred ecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCC-CcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEc
Confidence 999999999999999998899999999999999999999 99999999999987532 2579999999998
Q ss_pred CC
Q 045278 150 RN 151 (221)
Q Consensus 150 ~~ 151 (221)
+.
T Consensus 169 ~~ 170 (174)
T 3ulx_A 169 KN 170 (174)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.1e-58 Score=382.17 Aligned_cols=148 Identities=29% Similarity=0.587 Sum_probs=127.7
Q ss_pred CCCCCcceEcCCHHHHHHHHHHHhcC-CCCCCCceeccccCCCCCCccccCCCCCCCCCceEEEEeccccccCCCCCccc
Q 045278 1 MENLMGYKFQPSNEQILYLLVEKRLN-PHFSHHPIKDIVDICGLEPWDLATESTPESEDQVWYFFCEPCYKYRESHRAHR 79 (221)
Q Consensus 1 m~lppGfRF~PTDeELV~~YL~~Ki~-~~~~~~~I~~~~Dvy~~~Pw~Lp~~~~~~~~~~ewYFF~~r~~k~~~g~R~~R 79 (221)
+.|||||||||||||||.|||++|+. .+++..+|+ ++|||.+|||+||+.+. .++.+||||+++++||++|.|++|
T Consensus 15 ~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~-e~Diy~~~Pw~Lp~~~~--~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIA-EIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSE-ECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCE
T ss_pred cCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEe-ecccccCChhHhhchhh--cCCccEEEEeccccccCCCCcccc
Confidence 46999999999999999999999999 556679999 99999999999999874 368899999999999999999999
Q ss_pred cccceeeeecCcCeeeecCCcceeeEEEEEeeecCCCCCCcccCeEEEEEEeCCCC-----CCCCcEEEEEEEEcCCc
Q 045278 80 RTKAGHWKITSKDSQIKARNGPTGTKKFLTFYRHGLPRKEAITEWGMHEYHVKDDS-----SYKKEFILCCITRKRNK 152 (221)
Q Consensus 80 ~t~~G~Wk~tg~~k~I~~~~~~iG~kktl~Fy~g~~p~g~~kT~WvMhEY~l~~~~-----~~~~~~VLCkI~~k~~~ 152 (221)
+|++|+||+||+++.|..++.+||+||+|+||.|++|+| .||+|+||||+|.... ...++|||||||+|...
T Consensus 92 ~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g-~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG-TKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSC-EEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCC-CcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999999999998899999999999999999999 9999999999998753 24589999999999874
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=21.17 E-value=30 Score=23.84 Aligned_cols=23 Identities=4% Similarity=0.040 Sum_probs=19.5
Q ss_pred CCCcceEcC-CHHHHHHHHHHHhcC
Q 045278 3 NLMGYKFQP-SNEQILYLLVEKRLN 26 (221)
Q Consensus 3 lppGfRF~P-TDeELV~~YL~~Ki~ 26 (221)
.|.|+.|.. |++||-. ||..++.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~ 59 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLAD 59 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHH
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHh
Confidence 477899998 9999877 8999887
No 4
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=20.54 E-value=39 Score=26.82 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=10.7
Q ss_pred eeccccCCCCCCcc
Q 045278 34 IKDIVDICGLEPWD 47 (221)
Q Consensus 34 I~~~~Dvy~~~Pw~ 47 (221)
+. ++|||.+.|..
T Consensus 119 l~-dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LA-ECDIYSYNPDL 131 (164)
T ss_dssp GG-GCEEEEECCCG
T ss_pred cc-CCeEEEEcCCC
Confidence 45 88999999984
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=19.19 E-value=38 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=16.6
Q ss_pred CCcceEcCCHHHHHHHHHHHhcC
Q 045278 4 LMGYKFQPSNEQILYLLVEKRLN 26 (221)
Q Consensus 4 ppGfRF~PTDeELV~~YL~~Ki~ 26 (221)
+-|..+.||++|+|.|=..+++.
T Consensus 156 ~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 156 PSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp TTCCSSCCCHHHHHHHHTC----
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH
Confidence 44899999999999987766665
No 6
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=19.12 E-value=32 Score=29.21 Aligned_cols=17 Identities=12% Similarity=0.211 Sum_probs=13.8
Q ss_pred CCCcceEcCCHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLL 20 (221)
Q Consensus 3 lppGfRF~PTDeELV~~Y 20 (221)
+|| |.|.||+++|+.||
T Consensus 102 ~~P-~y~~~s~~~l~~~f 118 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHF 118 (294)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHH
Confidence 455 44889999999998
No 7
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=19.03 E-value=32 Score=29.17 Aligned_cols=17 Identities=12% Similarity=-0.201 Sum_probs=13.8
Q ss_pred CCCcceEcCCHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLL 20 (221)
Q Consensus 3 lppGfRF~PTDeELV~~Y 20 (221)
+||- .|.||+++|+.||
T Consensus 106 ~~P~-y~~~~~~~l~~~f 122 (293)
T 1f6k_A 106 VTPF-YYKFSFPEIKHYY 122 (293)
T ss_dssp ECCC-SSCCCHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHH
Confidence 4554 4889999999998
No 8
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=18.96 E-value=32 Score=29.14 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.8
Q ss_pred CCCcceEcCCHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLL 20 (221)
Q Consensus 3 lppGfRF~PTDeELV~~Y 20 (221)
+|| |.|.||+++|+.||
T Consensus 103 ~~P-~y~~~s~~~l~~~f 119 (292)
T 2ojp_A 103 VTP-YYNRPSQEGLYQHF 119 (292)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHH
Confidence 455 44889999999998
No 9
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=18.89 E-value=43 Score=28.72 Aligned_cols=18 Identities=17% Similarity=0.036 Sum_probs=14.1
Q ss_pred CCCcce--EcCCHHHHHHHH
Q 045278 3 NLMGYK--FQPSNEQILYLL 20 (221)
Q Consensus 3 lppGfR--F~PTDeELV~~Y 20 (221)
+||=|- |.||+++|+.||
T Consensus 110 ~~Pyy~~~~~~s~~~l~~~f 129 (309)
T 3fkr_A 110 MPPYHGATFRVPEAQIFEFY 129 (309)
T ss_dssp CCSCBTTTBCCCHHHHHHHH
T ss_pred cCCCCccCCCCCHHHHHHHH
Confidence 566332 799999999988
No 10
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=18.82 E-value=30 Score=29.58 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.1
Q ss_pred CCCcceEcCCHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLL 20 (221)
Q Consensus 3 lppGfRF~PTDeELV~~Y 20 (221)
+|| |.|.||+++|+.||
T Consensus 118 ~~P-~y~~~~~~~l~~~f 134 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHF 134 (304)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHH
Confidence 466 45889999999998
Done!