Query 045278
Match_columns 221
No_of_seqs 178 out of 913
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 20:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045278.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045278hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ut7a_ b.143.1.1 (A:) No apic 100.0 1.9E-55 1.4E-59 359.5 13.0 146 1-150 15-166 (166)
2 d1o5ka_ c.1.10.1 (A:) Dihydrod 27.8 7.4 0.00054 30.6 0.6 17 3-20 103-119 (295)
3 d1f74a_ c.1.10.1 (A:) N-acetyl 24.4 17 0.0012 28.5 2.2 20 2-22 105-124 (293)
4 d2a6na1 c.1.10.1 (A:1-292) Dih 18.1 16 0.0012 28.5 0.8 17 3-20 103-119 (292)
5 d1xkya1 c.1.10.1 (A:1-292) Dih 17.9 15 0.0011 28.6 0.6 18 3-21 105-122 (292)
6 d1xxxa1 c.1.10.1 (A:5-300) Dih 16.1 20 0.0014 28.1 0.8 16 4-20 110-125 (296)
7 d1rutx4 g.39.1.3 (X:114-146) L 15.9 23 0.0016 19.1 0.8 9 2-10 8-16 (33)
8 d1i27a_ a.4.5.30 (A:) C-termin 15.9 32 0.0023 22.0 1.7 17 10-26 8-24 (73)
9 d1hl2a_ c.1.10.1 (A:) N-acetyl 14.8 23 0.0017 27.5 1.0 19 3-22 104-122 (295)
10 d1w3ia_ c.1.10.1 (A:) 2-keto-3 13.0 26 0.0019 27.2 0.8 19 3-21 98-116 (293)
No 1
>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=100.00 E-value=1.9e-55 Score=359.49 Aligned_cols=146 Identities=29% Similarity=0.589 Sum_probs=126.5
Q ss_pred CCCCCcceEcCCHHHHHHHHHHHhcC-CCCCCCceeccccCCCCCCccccCCCCCCCCCceEEEEeccccccCCCCCccc
Q 045278 1 MENLMGYKFQPSNEQILYLLVEKRLN-PHFSHHPIKDIVDICGLEPWDLATESTPESEDQVWYFFCEPCYKYRESHRAHR 79 (221)
Q Consensus 1 m~lppGfRF~PTDeELV~~YL~~Ki~-~~~~~~~I~~~~Dvy~~~Pw~Lp~~~~~~~~~~ewYFF~~r~~k~~~g~R~~R 79 (221)
|+|||||||+|||||||.|||++|+. .+++.++|+ ++|||++|||+||+... .++.+||||+++.+++++|.|.+|
T Consensus 15 l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~-~~Dvy~~~Pw~Lp~~~~--~~~~~wyFft~~~~k~~~g~r~~R 91 (166)
T d1ut7a_ 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIA-EIDLYKFDPWVLPNKAL--FGEKEWYFFSPRDRKYPNGSRPNR 91 (166)
T ss_dssp SCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSE-ECCGGGSCGGGHHHHSS--SCSSEEEEEEECCC-------CCE
T ss_pred ccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccce-eccCCcCChhhccchhc--cCcceEEEEeeeccccCCCCcccc
Confidence 68999999999999999999999999 566779999 99999999999998764 367889999999999999999999
Q ss_pred cccceeeeecCcCeeeecCCcceeeEEEEEeeecCCCCCCcccCeEEEEEEeCCCCC-----CCCcEEEEEEEEcC
Q 045278 80 RTKAGHWKITSKDSQIKARNGPTGTKKFLTFYRHGLPRKEAITEWGMHEYHVKDDSS-----YKKEFILCCITRKR 150 (221)
Q Consensus 80 ~t~~G~Wk~tg~~k~I~~~~~~iG~kktl~Fy~g~~p~g~~kT~WvMhEY~l~~~~~-----~~~~~VLCkI~~k~ 150 (221)
+|++|+||++|+++.|.++|.+||+||+|+||+++.+++ .+|+|+||||+|.+... ..++|||||||+|+
T Consensus 92 ~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~-~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk 166 (166)
T d1ut7a_ 92 VAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKG-TKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ 166 (166)
T ss_dssp EETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSC-EEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred ccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCC-CccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence 999999999999999998899999999999999999999 99999999999986432 34789999999884
No 2
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=27.85 E-value=7.4 Score=30.61 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.0
Q ss_pred CCCcceEcCCHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLL 20 (221)
Q Consensus 3 lppGfRF~PTDeELV~~Y 20 (221)
+|| |.|.||++||+.||
T Consensus 103 ~pP-~y~~~s~~~i~~~~ 119 (295)
T d1o5ka_ 103 VTP-YYNKPTQEGLYQHY 119 (295)
T ss_dssp ECC-CSSCCCHHHHHHHH
T ss_pred eCC-CCCCCCHHHHHHHH
Confidence 466 56789999999987
No 3
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}
Probab=24.41 E-value=17 Score=28.50 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=15.5
Q ss_pred CCCCcceEcCCHHHHHHHHHH
Q 045278 2 ENLMGYKFQPSNEQILYLLVE 22 (221)
Q Consensus 2 ~lppGfRF~PTDeELV~~YL~ 22 (221)
-+||-| |.||++|++.||..
T Consensus 105 ~~pP~~-~~~s~~~~~~~~~~ 124 (293)
T d1f74a_ 105 AVTPFY-YKFSFPEIKHYYDT 124 (293)
T ss_dssp CCCCCS-SCCCHHHHHHHHHH
T ss_pred ccCccc-cccchHHHHHHHhc
Confidence 356655 88999999998853
No 4
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}
Probab=18.06 E-value=16 Score=28.50 Aligned_cols=17 Identities=18% Similarity=0.016 Sum_probs=13.3
Q ss_pred CCCcceEcCCHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLL 20 (221)
Q Consensus 3 lppGfRF~PTDeELV~~Y 20 (221)
+||- .|.|||+||+.||
T Consensus 103 ~pP~-~~~~~~~~i~~~f 119 (292)
T d2a6na1 103 VTPY-YNRPSQEGLYQHF 119 (292)
T ss_dssp ECCC-SSCCCHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHH
Confidence 3554 4789999999987
No 5
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}
Probab=17.92 E-value=15 Score=28.58 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.5
Q ss_pred CCCcceEcCCHHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLLV 21 (221)
Q Consensus 3 lppGfRF~PTDeELV~~YL 21 (221)
+|| +.|.||+++|+.||-
T Consensus 105 ~pP-~~~~~s~~~i~~~~~ 122 (292)
T d1xkya1 105 VAP-YYNKPSQEGMYQHFK 122 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 456 668899999999874
No 6
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=16.10 E-value=20 Score=28.12 Aligned_cols=16 Identities=13% Similarity=0.166 Sum_probs=13.1
Q ss_pred CCcceEcCCHHHHHHHH
Q 045278 4 LMGYKFQPSNEQILYLL 20 (221)
Q Consensus 4 ppGfRF~PTDeELV~~Y 20 (221)
|| +.|.||++||+.||
T Consensus 110 ~P-~~~~~~~~~l~~~~ 125 (296)
T d1xxxa1 110 TP-YYSKPPQRGLQAHF 125 (296)
T ss_dssp CC-CSSCCCHHHHHHHH
T ss_pred ec-cCCCCCHHHHHHHH
Confidence 44 55889999999987
No 7
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.89 E-value=23 Score=19.05 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=5.9
Q ss_pred CCCCcceEc
Q 045278 2 ENLMGYKFQ 10 (221)
Q Consensus 2 ~lppGfRF~ 10 (221)
+|-||-|||
T Consensus 8 ~LVPGDRFH 16 (33)
T d1rutx4 8 RLVPGDRFH 16 (33)
T ss_dssp BCCTTCEEE
T ss_pred cccCCceeE
Confidence 456777775
No 8
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.87 E-value=32 Score=22.02 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=12.9
Q ss_pred cCCHHHHHHHHHHHhcC
Q 045278 10 QPSNEQILYLLVEKRLN 26 (221)
Q Consensus 10 ~PTDeELV~~YL~~Ki~ 26 (221)
.+--||-|..||++|=.
T Consensus 8 ~~itEeaVrRYL~RKPm 24 (73)
T d1i27a_ 8 VQVTEDAVRRYLTRKPM 24 (73)
T ss_dssp SSCCHHHHHHHHHHSCB
T ss_pred cCcCHHHHHHHHhhCCC
Confidence 34458889999998744
No 9
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}
Probab=14.85 E-value=23 Score=27.55 Aligned_cols=19 Identities=11% Similarity=-0.134 Sum_probs=14.7
Q ss_pred CCCcceEcCCHHHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLLVE 22 (221)
Q Consensus 3 lppGfRF~PTDeELV~~YL~ 22 (221)
+|| +-|.+|++|++.||..
T Consensus 104 ~~p-~~~~~~~~~~~~~~~~ 122 (295)
T d1hl2a_ 104 VTP-FYYPFSFEEHCDHYRA 122 (295)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred eec-cccCCChHHHHHHHHH
Confidence 455 4578999999998853
No 10
>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}
Probab=13.03 E-value=26 Score=27.20 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=14.9
Q ss_pred CCCcceEcCCHHHHHHHHH
Q 045278 3 NLMGYKFQPSNEQILYLLV 21 (221)
Q Consensus 3 lppGfRF~PTDeELV~~YL 21 (221)
+||-+.+.||+++|+.||-
T Consensus 98 ~~P~~~~~~~~~~i~~~f~ 116 (293)
T d1w3ia_ 98 YAPYYYPRMSEKHLVKYFK 116 (293)
T ss_dssp ECCCSCSSCCHHHHHHHHH
T ss_pred cccchhccchHHHHHHHHH
Confidence 4665667899999999873
Done!