BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045279
(702 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/596 (39%), Positives = 342/596 (57%), Gaps = 49/596 (8%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG L ++K V +PL HP L + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + AP+I+FIDE+DAIA KRE E+ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD + +V+V+ ATNRP+++DPALRR GRFDR
Sbjct: 323 RIVSQLLTLMDGLKQR-----------------AHVIVMAATNRPNSIDPALRRFGRFDR 365
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXXXXXXXXXXMKR 362
E+ +G+PD R++IL + T+N+++ DL ++A T G V +++
Sbjct: 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
+D +L +I E M L +TM DF A PS+ RE
Sbjct: 426 KMDL--IDLEDETID-------------AEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+P V WED+GGL+ ++ E + ++ P+++ +FG+ G L YGPPGCGKTL+AKA
Sbjct: 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 530
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---G 539
+ANE ANFI IKGPELL + GESE VR +F +AR +PC+LFFDE+D++ R
Sbjct: 531 IANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590
Query: 540 KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
+GG +R++NQ+L E+DG +K VF+IGATNRPD++D A+LRPGR +L+Y+PLP
Sbjct: 591 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQ----------SKFCENLSGXXXXXXXXXXXXXX 649
R IL+A RK P+ VDL +A+ ++ C+
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Query: 650 XXXKLISSK---SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702
+ S D P I+ HFE+A+ SVS+ I++Y+ ++T + +
Sbjct: 711 RERQTNPSAMEVEEDDPVP-EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%)
Query: 412 QPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGP 471
+P R + ++ V ++DVGG + + ++ P ++ GV G LLYGP
Sbjct: 187 EPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246
Query: 472 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEV 531
PG GKTLIA+AVANE GA F I GPE+++K GESE +R F A +P I+F DE+
Sbjct: 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306
Query: 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
DA+ KR K G V R+++QLL +DG +R V V+ ATNRP+ +D A+ R GRF +
Sbjct: 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + +P R IL+ + + D VDL +A
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/596 (39%), Positives = 342/596 (57%), Gaps = 49/596 (8%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG L ++K V +PL HP L + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + AP+I+FIDE+DAIA KRE E+ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD + +V+V+ ATNRP+++DPALRR GRFDR
Sbjct: 323 RIVSQLLTLMDGLKQR-----------------AHVIVMAATNRPNSIDPALRRFGRFDR 365
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXXXXXXXXXXMKR 362
E+ +G+PD R++IL + T+N+++ DL ++A T G V +++
Sbjct: 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
+D +L +I E M L +TM DF A PS+ RE
Sbjct: 426 KMDL--IDLEDETID-------------AEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+P V WED+GGL+ ++ E + ++ P+++ +FG+ G L YGPPGCGKTL+AKA
Sbjct: 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKA 530
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---G 539
+ANE ANFI IKGPELL + GESE VR +F +AR +PC+LFFDE+D++ R
Sbjct: 531 IANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590
Query: 540 KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
+GG +R++NQ+L E+DG +K VF+IGATNRPD++D A+LRPGR +L+Y+PLP
Sbjct: 591 GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 650
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQ----------SKFCENLSGXXXXXXXXXXXXXX 649
R IL+A RK P+ VDL +A+ ++ C+
Sbjct: 651 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 710
Query: 650 XXXKLISSK---SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702
+ S D P I+ HFE+A+ SVS+ I++Y+ ++T + +
Sbjct: 711 RERQTNPSAMEVEEDDPVP-EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765
Score = 153 bits (387), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%)
Query: 412 QPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGP 471
+P R + ++ V ++D+GG + + ++ P ++ GV G LLYGP
Sbjct: 187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246
Query: 472 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEV 531
PG GKTLIA+AVANE GA F I GPE+++K GESE +R F A +P I+F DE+
Sbjct: 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306
Query: 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
DA+ KR K G V R+++QLL +DG +R V V+ ATNRP+ +D A+ R GRF +
Sbjct: 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + +P R IL+ + + D VDL +A
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 165/267 (61%), Gaps = 3/267 (1%)
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+PNV W D+G L+ +R E I+ ++ P++++ G+ G LL GPPGCGKTL+AKA
Sbjct: 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
VANE+G NFI +KGPELLN YVGESE AVR +F RA+ +PC++FFDEVDAL +R
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 123
Query: 543 GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602
R++NQLL E+DG + R+ VF++ ATNRPD++D A+LRPGR K L+V LP P +R
Sbjct: 124 TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183
Query: 603 GLILEALAR---KKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKS 659
IL+ + + K P+D V+L IA C+ +G ++ KS
Sbjct: 184 LAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243
Query: 660 SSDVTPFTIKLTHFEQALSKISPSVSE 686
++ + HFE+A K+ S+S+
Sbjct: 244 GNEKGELKVSHKHFEEAFKKVRSSISK 270
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 118/202 (58%), Gaps = 17/202 (8%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+G +E + EEL M ++ P+ +P + LG+ AG+LL GPPGCGKT LA A+ANE+
Sbjct: 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES 68
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G+ F + E+++ G SE +R +F +A +AP ++F DE+DA+ +R + +
Sbjct: 69 GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASV 128
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
R+V QL+T MD Q V ++ ATNRPD +DPA+ RPGR D+
Sbjct: 129 RVVNQLLTEMDGLEARQQ-----------------VFIMAATNRPDIIDPAILRPGRLDK 171
Query: 303 EIVLGVPDENARVQILSVLTRN 324
+ +G+P R+ IL +T+N
Sbjct: 172 TLFVGLPPPADRLAILKTITKN 193
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 228 bits (581), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 175/311 (56%), Gaps = 32/311 (10%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG L ++K V +PL HP L + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + AP+I+FIDE+DAIA KRE E+ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD +V+V+ ATNRP+++DPALRR GRFDR
Sbjct: 323 RIVSQLLTLMD-----------------GLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXXXXXXXXXXMKR 362
E+ +G+PD R++IL + T+N+++ DL ++A T G V +++
Sbjct: 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
+D D + E M L +TM DF A PS+ RE
Sbjct: 426 KMDLI---------------DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
Query: 423 IPNVKWEDVGG 433
+P V WED+GG
Sbjct: 471 VPQVTWEDIGG 481
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%)
Query: 412 QPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGP 471
+P R + ++ V ++D+GG + + ++ P ++ GV G LLYGP
Sbjct: 187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246
Query: 472 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEV 531
PG GKTLIA+AVANE GA F I GPE+++K GESE +R F A +P I+F DE+
Sbjct: 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306
Query: 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
DA+ KR K G V R+++QLL +DG +R V V+ ATNRP+ +D A+ R GRF +
Sbjct: 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + +P R IL+ + + D VDL +A
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 228 bits (581), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 175/311 (56%), Gaps = 32/311 (10%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG L ++K V +PL HP L + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + AP+I+FIDE+DAIA KRE E+ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD +V+V+ ATNRP+++DPALRR GRFDR
Sbjct: 323 RIVSQLLTLMD-----------------GLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXXXXXXXXXXMKR 362
E+ +G+PD R++IL + T+N+++ DL ++A T G V +++
Sbjct: 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
+D D + E M L +TM DF A PS+ RE
Sbjct: 426 KMDLI---------------DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
Query: 423 IPNVKWEDVGG 433
+P V WED+GG
Sbjct: 471 VPQVTWEDIGG 481
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%)
Query: 412 QPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGP 471
+P R + ++ V ++D+GG + + ++ P ++ GV G LLYGP
Sbjct: 187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246
Query: 472 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEV 531
PG GKTLIA+AVANE GA F I GPE+++K GESE +R F A +P I+F DE+
Sbjct: 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306
Query: 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
DA+ KR K G V R+++QLL +DG +R V V+ ATNRP+ +D A+ R GRF +
Sbjct: 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + +P R IL+ + + D VDL +A
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 175/311 (56%), Gaps = 32/311 (10%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG L ++K V +PL HP L + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + AP+I+FIDE+DAIA KRE E+ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD +V+V+ ATNRP+++DPALRR GRFDR
Sbjct: 323 RIVSQLLTLMD-----------------GLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVXXXXXXXXXXXXXXXMKR 362
E+ +G+PD R++IL + T+N+++ DL ++A T G V +++
Sbjct: 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
Query: 363 IIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSA 422
+D D + E M L +TM DF A PS+ RE
Sbjct: 426 KMDLI---------------DLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVE 470
Query: 423 IPNVKWEDVGG 433
+P V WED+GG
Sbjct: 471 VPQVTWEDIGG 481
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 123/215 (57%)
Query: 412 QPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGP 471
+P R + ++ V ++D+GG + + ++ P ++ GV G LLYGP
Sbjct: 187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246
Query: 472 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEV 531
PG GKTLIA+AVANE GA F I GPE+++K GESE +R F A +P I+F DE+
Sbjct: 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306
Query: 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
DA+ KR K G V R+++QLL +DG +R V V+ ATNRP+ +D A+ R GRF +
Sbjct: 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + +P R IL+ + + D VDL +A
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 174/300 (58%), Gaps = 17/300 (5%)
Query: 417 REGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGK 476
RE +P V WED+GGL+ ++ E + ++ P+++ +FG+ G L YGPPGCGK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 477 TLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536
TL+AKA+ANE ANFI IKGPELL + GESE VR +F +AR +PC+LFFDE+D++
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 537 KR---GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLY 593
R +GG +R++NQ+L E+DG +K VF+IGATNRPD++D A+LRPGR +L+Y
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIY 182
Query: 594 VPLPTPDERGLILEALARKKPIDDSVDLHTIAQ----------SKFCENLSGXXXXXXXX 643
+PLP R IL+A RK P+ VDL +A+ ++ C+
Sbjct: 183 IPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242
Query: 644 XXXXXXXXXKLISSK---SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700
+ S D P I+ HFE+A+ SVS+ I++Y+ ++T +
Sbjct: 243 SEIRRERERQTNPSAMEVEEDDPVP-EIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301
Score = 159 bits (401), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 122/224 (54%), Gaps = 20/224 (8%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
++D+GG+E V EL+ V P+ HP G+ P G+L YGPPGCGKT LA AIANE
Sbjct: 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
F I E+++ G SE N+R++F KA + AP ++F DE+D+IA R +
Sbjct: 74 QANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 133
Query: 243 ---RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGR 299
R++ Q++T MD V +IGATNRPD +DPA+ RPGR
Sbjct: 134 AADRVINQILTEMD-----------------GMSTKKNVFIIGATNRPDIIDPAILRPGR 176
Query: 300 FDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343
D+ I + +PDE +RV IL R V DL +A+ T GF
Sbjct: 177 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGF 220
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 204 bits (519), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/222 (45%), Positives = 145/222 (65%), Gaps = 17/222 (7%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG L ++K V +PL HP L + +GV+P GILLYGPPG GKT +A A+ANET
Sbjct: 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
G F+ I+ E++S ++G SE N+R F +A + AP+I+FIDE+DAIA KRE E+ER
Sbjct: 263 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVER 322
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
RIV+QL+T MD +V+V+ ATNRP+++DPALRR GRFDR
Sbjct: 323 RIVSQLLTLMD-----------------GLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344
E+ +G+PD R++IL + T+N+++ DL ++A T G V
Sbjct: 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHV 407
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 123/215 (57%)
Query: 412 QPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGP 471
+P R + ++ V ++DVGG + + ++ P ++ GV G LLYGP
Sbjct: 187 EPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGP 246
Query: 472 PGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEV 531
PG GKTLIA+AVANE GA F I GPE+++K GESE +R F A +P I+F DE+
Sbjct: 247 PGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDEL 306
Query: 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
DA+ KR K G V R+++QLL +DG +R V V+ ATNRP+ +D A+ R GRF +
Sbjct: 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + +P R IL+ + + D VDL +A
Sbjct: 367 VDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 133/208 (63%), Gaps = 7/208 (3%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNV++ED+GGL+ E + +K PE +E+ G++ G LLYGPPG GKTL+AKAV
Sbjct: 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAV 71
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-- 541
A E A FI + G EL+ K++GE V+ +F A+ +P I+F DE+DA+ KR
Sbjct: 72 ATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALT 131
Query: 542 -GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G V+R L QLL E+DG D R V +IGATNRPD++D A+LRPGRF +++ V P PD
Sbjct: 132 GGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEV--PAPD 189
Query: 601 ERGL--ILEALARKKPIDDSVDLHTIAQ 626
E+G IL+ RK + + V+L IA+
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAK 217
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 137/227 (60%), Gaps = 22/227 (9%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
R++D+GG+E ++E++ V +PL HP+L + +G+ P GILLYGPPG GKT LA A+A E
Sbjct: 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL----Q 237
T F ++ +E+V G ++D+F A APSI+FIDEIDAIA+KR +
Sbjct: 75 TNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGD 134
Query: 238 REMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRP 297
RE++R ++ QL+ MD G V +IGATNRPD +DPA+ RP
Sbjct: 135 REVQRTLM-QLLAEMD-----------------GFDARGDVKIIGATNRPDILDPAILRP 176
Query: 298 GRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344
GRFDR I + PDE R++IL + TR + + +L +IA+ T G V
Sbjct: 177 GRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCV 223
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 94/220 (42%), Positives = 131/220 (59%), Gaps = 11/220 (5%)
Query: 410 MVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLY 469
M +PS + V ++DVGG + E + +V +K P ++ G + G LL
Sbjct: 4 MYKPSGNK-------RVTFKDVGGAEEAIEEL-KEVVEFLKDPSKFNRIGARMPKGILLV 55
Query: 470 GPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFD 529
GPPG GKTL+A+AVA EA F HI G + + +VG VR LF++A+ +PCI+F D
Sbjct: 56 GPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFID 115
Query: 530 EVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPG 586
E+DA+ RG GG ER LNQLL+E+DG D ++G+ V+ ATNRPD++D A+LRPG
Sbjct: 116 EIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175
Query: 587 RFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
RF K + V P R ILE R KP+ + V+L IA+
Sbjct: 176 RFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK 215
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 126/230 (54%), Gaps = 31/230 (13%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
F+D+GG E +EELK EV+ L P +G R GILL GPPG GKT LA A+A E
Sbjct: 15 FKDVGGAEEAIEELK-EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR-ENLQREME 241
VPF+ IS ++ V G +RDLF++A AP IVFIDEIDA+ R L +
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133
Query: 242 RR--IVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGY-----VLVIGATNRPDAVDPAL 294
R + QL+ MD G+ ++V+ ATNRPD +DPAL
Sbjct: 134 EREQTLNQLLVEMD----------------------GFDSKEGIIVMAATNRPDILDPAL 171
Query: 295 RRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344
RPGRFD++IV+ PD R +IL + TRN + +L IA+ TPGFV
Sbjct: 172 LRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 165 bits (417), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 11/220 (5%)
Query: 410 MVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLY 469
M +PS + V ++DVGG + E + +V +K P ++ G + G LL
Sbjct: 4 MYKPSGNK-------RVTFKDVGGAEEAIEEL-KEVVEFLKDPSKFNRIGARMPKGILLV 55
Query: 470 GPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFD 529
GPPG G TL+A+AVA EA F HI G + + +VG VR LF++A+ +PCI+F D
Sbjct: 56 GPPGTGATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFID 115
Query: 530 EVDALTTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPG 586
E+DA+ RG GG ER LNQLL+E+DG D ++G+ V+ ATNRPD++D A+LRPG
Sbjct: 116 EIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175
Query: 587 RFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
RF K + V P R ILE R KP+ + V+L IA+
Sbjct: 176 RFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK 215
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 96/230 (41%), Positives = 125/230 (54%), Gaps = 31/230 (13%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
F+D+GG E +EELK EV+ L P +G R GILL GPPG G T LA A+A E
Sbjct: 15 FKDVGGAEEAIEELK-EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGATLLARAVAGEA 73
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR-ENLQREME 241
VPF+ IS ++ V G +RDLF++A AP IVFIDEIDA+ R L +
Sbjct: 74 NVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHD 133
Query: 242 RR--IVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGY-----VLVIGATNRPDAVDPAL 294
R + QL+ MD G+ ++V+ ATNRPD +DPAL
Sbjct: 134 EREQTLNQLLVEMD----------------------GFDSKEGIIVMAATNRPDILDPAL 171
Query: 295 RRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344
RPGRFD++IV+ PD R +IL + TRN + +L IA+ TPGFV
Sbjct: 172 LRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFV 221
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 83/207 (40%), Positives = 122/207 (58%), Gaps = 3/207 (1%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P + DVGGLD E IV +K +++++ G+ G L+YGPPG GKTL+A+A
Sbjct: 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARAC 235
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GK 540
A + A F+ + P+L+ Y+GE VR F+ A+ +P I+F DE+DA+ TKR K
Sbjct: 236 AAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEK 295
Query: 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G V+R + +LL +LDG V V+ ATNR DV+D A+LR GR + + PLP+ D
Sbjct: 296 SGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQS 627
R IL+ +RK DD ++ +A+S
Sbjct: 356 SRAQILQIHSRKMTTDDDINWQELARS 382
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 123/221 (55%), Gaps = 14/221 (6%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG++ +EEL +++P+ + +G+R G L+YGPPG GKT LA A A +T
Sbjct: 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
F K++A ++V G + +RD F+ A AP+I+FIDE+DAI +KR + ++ +R
Sbjct: 240 NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDR 299
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
+ ++ +++ V V+ ATNR D +DPAL R GR DR
Sbjct: 300 EVQRTMLELLNQLDGF--------------SSDDRVKVLAATNRVDVLDPALLRSGRLDR 345
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343
+I +P E++R QIL + +R + + + ++ARST F
Sbjct: 346 KIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEF 386
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 121/205 (59%), Gaps = 4/205 (1%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P+V + DVGGLD + E + + + YE+ G+D G LLYGPPG GKT++ KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR--GKE 541
AN A FI + G E ++KY+GE VR +F AR +P I+F DEVD++ TKR +
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 542 GG-WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVP-LPTP 599
G V+R+L +LL ++DG D+ V VI ATNR D +D A+LRPGR + + P L
Sbjct: 287 GSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDR 346
Query: 600 DERGLILEALARKKPIDDSVDLHTI 624
ER LI +A K + DL ++
Sbjct: 347 RERRLIFGTIASKMSLAPEADLDSL 371
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 74/185 (40%), Positives = 105/185 (56%), Gaps = 20/185 (10%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG++ +E++ V +PL L + +G+ P G+LLYGPPG GKT L A+AN T
Sbjct: 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
F +++ +E V G +RD+F A APSI+FIDE+D+IA+KR + Q +R
Sbjct: 231 KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDR 290
Query: 243 ---RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGR 299
RI+ +L+T MD + V VI ATNR D +DPAL RPGR
Sbjct: 291 EVQRILIELLTQMDGFDQSTN-----------------VKVIMATNRADTLDPALLRPGR 333
Query: 300 FDREI 304
DR+I
Sbjct: 334 LDRKI 338
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 4/215 (1%)
Query: 415 SRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGC 474
SR + P V ++DV G + + E + IV +K P + E G + G LL GPPG
Sbjct: 17 SRARVLTEAPKVTFKDVAGAEEAKEE-LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGV 75
Query: 475 GKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDAL 534
GKT +A+AVA EA FI G + + +VG VR LF A+ +PCI+F DE+DA+
Sbjct: 76 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 135
Query: 535 TTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
KRG GG ER LNQLL+E+DG +K + V+ ATNRPD++D A+LRPGRF +
Sbjct: 136 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 195
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + P R IL AR KP+ + VDL +A+
Sbjct: 196 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 230
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 108/207 (52%), Gaps = 26/207 (12%)
Query: 144 LYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASE 203
L +P +G R G+LL GPPG GKT LA A+A E VPF S ++ V G
Sbjct: 50 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 109
Query: 204 ENIRDLFSKAYRTAPSIVFIDEIDAIASKR------ENLQREMERRIVTQLMTCMDESHR 257
+RDLF A R AP IVFIDEIDA+ KR N +RE + + QL+ MD +
Sbjct: 110 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---QTLNQLLVEMDGFEK 166
Query: 258 LVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQI 317
++V+ ATNRPD +DPAL RPGRFDR+I + PD R QI
Sbjct: 167 DTA-----------------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 209
Query: 318 LSVLTRNLRVEGSFDLVKIARSTPGFV 344
L + R + DL +A+ TPGFV
Sbjct: 210 LRIHARGKPLAEDVDLALLAKRTPGFV 236
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 4/215 (1%)
Query: 415 SRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGC 474
SR + P V ++DV G + + E + IV +K P + E G + G LL GPPG
Sbjct: 26 SRARVLTEAPKVTFKDVAGAEEAKEE-LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGV 84
Query: 475 GKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDAL 534
GKT +A+AVA EA FI G + + +VG VR LF A+ +PCI+F DE+DA+
Sbjct: 85 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 144
Query: 535 TTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
KRG GG ER LNQLL+E+DG +K + V+ ATNRPD++D A+LRPGRF +
Sbjct: 145 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + P R IL AR KP+ + VDL +A+
Sbjct: 205 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 239
Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 108/207 (52%), Gaps = 26/207 (12%)
Query: 144 LYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASE 203
L +P +G R G+LL GPPG GKT LA A+A E VPF S ++ V G
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 204 ENIRDLFSKAYRTAPSIVFIDEIDAIASKR------ENLQREMERRIVTQLMTCMDESHR 257
+RDLF A R AP IVFIDEIDA+ KR N +RE + + QL+ MD +
Sbjct: 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---QTLNQLLVEMDGFEK 175
Query: 258 LVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQI 317
++V+ ATNRPD +DPAL RPGRFDR+I + PD R QI
Sbjct: 176 DTA-----------------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218
Query: 318 LSVLTRNLRVEGSFDLVKIARSTPGFV 344
L + R + DL +A+ TPGFV
Sbjct: 219 LRIHARGKPLAEDVDLALLAKRTPGFV 245
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 119/215 (55%), Gaps = 5/215 (2%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P+V + DVGG + + + PE + G+D G LLYGPPG GKTL A+AV
Sbjct: 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAV 263
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GK 540
AN A FI + G EL+ KYVGE VR LF ART CI+FFDE+DA+ R G
Sbjct: 264 ANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGA 323
Query: 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G V+R + +L+ +LDG D R + V+ ATNRP+ +D A+LRPGR + + LP +
Sbjct: 324 GGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 635
R I ++ ++ + I S+ C N +G
Sbjct: 384 GRANIFRIHSKSMSVERGIRWELI--SRLCPNSTG 416
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 114/223 (51%), Gaps = 22/223 (9%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG + +E+L+ V +PL P+ LG+ P GILLYGPPG GKT A A+AN T
Sbjct: 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR----ENLQR 238
F ++ +E+V G +R+LF A I+F DEIDA+ R
Sbjct: 268 DATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDN 327
Query: 239 EMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPG 298
E++R ++ +L+T +D G + V+ ATNRP+ +DPAL RPG
Sbjct: 328 EVQRTML-ELITQLD-----------------GFDPRGNIKVMFATNRPNTLDPALLRPG 369
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTP 341
R DR++ +PD R I + ++++ VE I+R P
Sbjct: 370 RIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCP 412
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/215 (42%), Positives = 125/215 (58%), Gaps = 4/215 (1%)
Query: 415 SRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGC 474
SR + P V ++DV G + + E + IV +K P + E G + G LL GPPG
Sbjct: 26 SRARVLTEAPKVTFKDVAGAEEAKEE-LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGV 84
Query: 475 GKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDAL 534
GKT +A+AVA EA FI G + + +VG VR LF A+ +PCI+F DE+DA+
Sbjct: 85 GKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 144
Query: 535 TTKRGKE-GGWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKL 591
KRG GG ER LNQLL+E+DG +K + V+ ATNRPD++D A+LRPGRF +
Sbjct: 145 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 626
+ + P R IL AR KP+ + VDL +A+
Sbjct: 205 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 239
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 108/207 (52%), Gaps = 26/207 (12%)
Query: 144 LYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASE 203
L +P +G R G+LL GPPG GKT LA A+A E VPF S ++ V G
Sbjct: 59 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 118
Query: 204 ENIRDLFSKAYRTAPSIVFIDEIDAIASKR------ENLQREMERRIVTQLMTCMDESHR 257
+RDLF A R AP IVFIDEIDA+ KR N +RE + + QL+ MD +
Sbjct: 119 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---QTLNQLLVEMDGFEK 175
Query: 258 LVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQI 317
++V+ ATNRPD +DPAL RPGRFDR+I + PD R QI
Sbjct: 176 DTA-----------------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218
Query: 318 LSVLTRNLRVEGSFDLVKIARSTPGFV 344
L + R + DL +A+ TPGFV
Sbjct: 219 LRIHARGKPLAEDVDLALLAKRTPGFV 245
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 83/203 (40%), Positives = 121/203 (59%), Gaps = 4/203 (1%)
Query: 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA 487
+ DV G D + E +V ++ P +++ G + G L+ GPPG GKTL+AKA+A EA
Sbjct: 11 FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 488 GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-GGWVV 546
F I G + + +VG VR +F +A+ +PCI+F DE+DA+ +RG GG
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 547 ER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGL 604
ER LNQ+L+E+DG + +G+ VI ATNRPDV+D A+LRPGRF + + V LP R
Sbjct: 130 EREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQ 189
Query: 605 ILEALARKKPIDDSVDLHTIAQS 627
IL+ R+ P+ +D IA+
Sbjct: 190 ILKVHMRRVPLAPDIDAAIIARG 212
Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 123/226 (54%), Gaps = 25/226 (11%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
F D+ G + EE+ E++ L P Q LG + G+L+ GPPG GKT LA AIA E
Sbjct: 11 FADVAGCDEAKEEVA-ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR-ENLQREME 241
VPF+ IS ++ V G +RD+F +A + AP I+FIDEIDA+ +R L +
Sbjct: 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHD 129
Query: 242 RR--IVTQLMTCMD--ESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRP 297
R + Q++ MD E + ++VI ATNRPD +DPAL RP
Sbjct: 130 EREQTLNQMLVEMDGFEGNE-------------------GIIVIAATNRPDVLDPALLRP 170
Query: 298 GRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343
GRFDR++V+G+PD R QIL V R + + D IAR TPGF
Sbjct: 171 GRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGF 216
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 122/206 (59%), Gaps = 4/206 (1%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P V ++DV G + + E + IV +K P + E G + G LL GPPG GKT +A+AV
Sbjct: 11 PKVTFKDVAGAEEAKEEL-KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 69
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE-G 542
A EA FI G + + +VG VR LF A+ +PCI+F DE+DA+ KRG G
Sbjct: 70 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 129
Query: 543 GWVVER--LLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G ER LNQLL+E+DG +K + V+ ATNRPD++D A+LRPGRF + + + P
Sbjct: 130 GGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK 189
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQ 626
R IL AR KP+ + VDL +A+
Sbjct: 190 GREQILRIHARGKPLAEDVDLALLAK 215
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 108/207 (52%), Gaps = 26/207 (12%)
Query: 144 LYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASE 203
L +P +G R G+LL GPPG GKT LA A+A E VPF S ++ V G
Sbjct: 35 LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGA 94
Query: 204 ENIRDLFSKAYRTAPSIVFIDEIDAIASKR------ENLQREMERRIVTQLMTCMDESHR 257
+RDLF A R AP IVFIDEIDA+ KR N +RE + + QL+ MD +
Sbjct: 95 ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---QTLNQLLVEMDGFEK 151
Query: 258 LVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQI 317
++V+ ATNRPD +DPAL RPGRFDR+I + PD R QI
Sbjct: 152 DTA-----------------IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194
Query: 318 LSVLTRNLRVEGSFDLVKIARSTPGFV 344
L + R + DL +A+ TPGFV
Sbjct: 195 LRIHARGKPLAEDVDLALLAKRTPGFV 221
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 121/207 (58%), Gaps = 3/207 (1%)
Query: 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482
+P+ ++ VGGL E I +K PE +E G+ G +LYGPPG GKTL+A+A
Sbjct: 142 VPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARA 201
Query: 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR--GK 540
VA+ FI + G EL+ KY+GE VR LF AR +P I+F DE+D++ + R G
Sbjct: 202 VAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGS 261
Query: 541 EGG-WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599
GG V+R + +LL +LDG + K + +I ATNR D++D A+LRPGR + + P P+
Sbjct: 262 GGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSV 321
Query: 600 DERGLILEALARKKPIDDSVDLHTIAQ 626
R IL +RK + ++L +A+
Sbjct: 322 AARAEILRIHSRKMNLTRGINLRKVAE 348
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 121/230 (52%), Gaps = 34/230 (14%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ +GG+ ++E+K + +P+ HP+L + LG+ G++LYGPPG GKT LA A+A+ T
Sbjct: 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT 206
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR--------E 234
F ++S E+V G +R+LF A APSI+F+DEID+I S R
Sbjct: 207 DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDS 266
Query: 235 NLQREMERRIVTQLMTCMD--ESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDP 292
+QR M +L+ +D E+ + ++ +I ATNR D +DP
Sbjct: 267 EVQRTM-----LELLNQLDGFETSKNIK-------------------IIMATNRLDILDP 302
Query: 293 ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPG 342
AL RPGR DR+I P AR +IL + +R + + +L K+A G
Sbjct: 303 ALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNG 352
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/212 (39%), Positives = 116/212 (54%), Gaps = 20/212 (9%)
Query: 390 LPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRI 449
LP E + L MT FE+ + ++ +GGL E I +
Sbjct: 159 LPRETDPLVYNMTSFEQG-----------------EITFDGIGGLTEQIRELREVIELPL 201
Query: 450 KFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL 509
K PE ++ G+ G LLYGPPG GKTL+AKAVA GANFI +++KY+GES
Sbjct: 202 KNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESAR 261
Query: 510 AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWV---VERLLNQLLIELDGADKRKGV 566
+R +F+ A+ PCI+F DEVDA+ +R EG ++R L +LL ++DG D
Sbjct: 262 IIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321
Query: 567 FVIGATNRPDVMDRAVLRPGRFGKLLYVPLPT 598
+I ATNRPD +D A+LRPGR + + +PLP
Sbjct: 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPN 353
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 125/225 (55%), Gaps = 22/225 (9%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
F +GG+ + EL+ + +PL +P++ Q +G++P G+LLYGPPG GKT LA A+A
Sbjct: 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI 239
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR----ENLQR 238
G F A+ +V G S IR++F+ A P I+F+DE+DAI +R + R
Sbjct: 240 GANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADR 299
Query: 239 EMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPG 298
E++R ++ +L+T MD L G +I ATNRPD +DPAL RPG
Sbjct: 300 EIQRTLM-ELLTQMDGFDNL-----------------GQTKIIMATNRPDTLDPALLRPG 341
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343
R DR++ + +P+E R++I + T ++ G FD + + GF
Sbjct: 342 RLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGF 386
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 126/229 (55%), Gaps = 27/229 (11%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
RF+D+ G E EE+ +E++ L +P+ LG + G+LL GPPG GKT LA A+A E
Sbjct: 9 RFKDMAGNEEAKEEV-VEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRE------- 234
VPF+ + + + G +RDLF A + APSI+FIDEIDAI R
Sbjct: 68 AHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSG 127
Query: 235 NLQREMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPAL 294
N +RE + + QL+ MD P V+V+ ATNRP+ +DPAL
Sbjct: 128 NDERE---QTLNQLLAEMDGFGSENAP----------------VIVLAATNRPEILDPAL 168
Query: 295 RRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343
RPGRFDR++++ PD N RV+IL V + +++ +L ++A+ T G
Sbjct: 169 MRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGL 217
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 122/218 (55%), Gaps = 10/218 (4%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNV+++D+ G + + E IV +K+PE Y G + G LL GPPG GKTL+AKAV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAV 64
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG 543
A EA F + G + +VG VR LF A+ +P I+F DE+DA+ R GG
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAA-GG 123
Query: 544 WVV-----ERLLNQLLIELDG-ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597
V E+ LNQLL E+DG + V V+ ATNRP+++D A++RPGRF + + V P
Sbjct: 124 VVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 183
Query: 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 635
+ R IL+ + + + V+L +A K L+G
Sbjct: 184 DFNGRVEILKVHIKGVKLANDVNLQEVA--KLTAGLAG 219
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 115/192 (59%), Gaps = 4/192 (2%)
Query: 417 REGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGK 476
R S PNVKWEDV GL+ + ++ +KFP ++ +G LLYGPPG GK
Sbjct: 15 RGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGK 73
Query: 477 TLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536
+ +AKAVA EA + F + +L++K++GESE V+ LF+ AR P I+F DEVDALT
Sbjct: 74 SYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTG 133
Query: 537 KRGKEGGWVVERLLNQLLIELDG-ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVP 595
RG+ R+ +LL++++G + +GV V+GATN P +D A+ R RF + +Y+P
Sbjct: 134 TRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIP 191
Query: 596 LPTPDERGLILE 607
LP R + E
Sbjct: 192 LPDLAARTTMFE 203
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 114/200 (57%), Gaps = 21/200 (10%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIAN 180
+++D+ G+E E LK VI+P+ P L + G R P +GILLYGPPG GK+ LA A+A
Sbjct: 25 KWEDVAGLEGAKEALKEAVILPVKFPHL--FKGNRKPTSGILLYGPPGTGKSYLAKAVAT 82
Query: 181 ETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREM 240
E F+ +S++++VS G SE+ ++ LF+ A PSI+FIDE+DA+ R + E
Sbjct: 83 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESEA 142
Query: 241 ERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRF 300
RRI T+L+ M+ Q VLV+GATN P +D A+RR RF
Sbjct: 143 SRRIKTELLVQMNGVGNDSQG----------------VLVLGATNIPWQLDSAIRR--RF 184
Query: 301 DREIVLGVPDENARVQILSV 320
+R I + +PD AR + +
Sbjct: 185 ERRIYIPLPDLAARTTMFEI 204
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 114/189 (60%), Gaps = 4/189 (2%)
Query: 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLI 479
S PNVKWEDV GL+ + ++ +KFP ++ +G LLYGPPG GK+ +
Sbjct: 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYL 100
Query: 480 AKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539
AKAVA EA + F + +L++K++GESE V+ LF+ AR P I+F D+VDALT RG
Sbjct: 101 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 160
Query: 540 KEGGWVVERLLNQLLIELDG-ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPT 598
+ R+ +LL++++G + +GV V+GATN P +D A+ R RF + +Y+PLP
Sbjct: 161 EGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 218
Query: 599 PDERGLILE 607
R + E
Sbjct: 219 LAARTTMFE 227
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 21/200 (10%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIAN 180
+++D+ G+E E LK VI+P+ P L + G R P +GILLYGPPG GK+ LA A+A
Sbjct: 49 KWEDVAGLEGAKEALKEAVILPVKFPHL--FKGNRKPTSGILLYGPPGTGKSYLAKAVAT 106
Query: 181 ETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREM 240
E F+ +S++++VS G SE+ ++ LF+ A PSI+FID++DA+ R + E
Sbjct: 107 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 166
Query: 241 ERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRF 300
RRI T+L+ M+ Q VLV+GATN P +D A+RR RF
Sbjct: 167 SRRIKTELLVQMNGVGNDSQ----------------GVLVLGATNIPWQLDSAIRR--RF 208
Query: 301 DREIVLGVPDENARVQILSV 320
+R I + +PD AR + +
Sbjct: 209 ERRIYIPLPDLAARTTMFEI 228
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 145 bits (367), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 117/193 (60%), Gaps = 8/193 (4%)
Query: 420 FSAI----PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCG 475
F+AI PNVKWEDV GL+ + ++ +KFP ++ +G LLYGPPG G
Sbjct: 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTG 63
Query: 476 KTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALT 535
K+ +AKAVA EA + F + +L++K++GESE V+ LF+ AR P I+F D+VDALT
Sbjct: 64 KSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALT 123
Query: 536 TKRGKEGGWVVERLLNQLLIELDG-ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594
RG+ R+ +LL++++G + +GV V+GATN P +D A+ R RF + +Y+
Sbjct: 124 GTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYI 181
Query: 595 PLPTPDERGLILE 607
PLP R + E
Sbjct: 182 PLPDLAARTTMFE 194
Score = 130 bits (327), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 21/200 (10%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIAN 180
+++D+ G+E E LK VI+P+ P L + G R P +GILLYGPPG GK+ LA A+A
Sbjct: 16 KWEDVAGLEGAKEALKEAVILPVKFPHL--FKGNRKPTSGILLYGPPGTGKSYLAKAVAT 73
Query: 181 ETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREM 240
E F+ +S++++VS G SE+ ++ LF+ A PSI+FID++DA+ R + E
Sbjct: 74 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 133
Query: 241 ERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRF 300
RRI T+L+ M+ Q VLV+GATN P +D A+RR RF
Sbjct: 134 SRRIKTELLVQMNGVGNDSQG----------------VLVLGATNIPWQLDSAIRR--RF 175
Query: 301 DREIVLGVPDENARVQILSV 320
+R I + +PD AR + +
Sbjct: 176 ERRIYIPLPDLAARTTMFEI 195
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 144 bits (364), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/189 (40%), Positives = 114/189 (60%), Gaps = 4/189 (2%)
Query: 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLI 479
S PNVKWEDV GL+ + ++ +KFP ++ +G LLYGPPG GK+ +
Sbjct: 27 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYL 85
Query: 480 AKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539
AKAVA EA + F + +L++K++GESE V+ LF+ AR P I+F D+VDALT RG
Sbjct: 86 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 145
Query: 540 KEGGWVVERLLNQLLIELDG-ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPT 598
+ R+ +LL++++G + +GV V+GATN P +D A+ R RF + +Y+PLP
Sbjct: 146 EGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 203
Query: 599 PDERGLILE 607
R + E
Sbjct: 204 LAARTTMFE 212
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 114/200 (57%), Gaps = 21/200 (10%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIAN 180
+++D+ G+E E LK VI+P+ P L + G R P +GILLYGPPG GK+ LA A+A
Sbjct: 34 KWEDVAGLEGAKEALKEAVILPVKFPHL--FKGNRKPTSGILLYGPPGTGKSYLAKAVAT 91
Query: 181 ETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREM 240
E F+ +S++++VS G SE+ ++ LF+ A PSI+FID++DA+ R + E
Sbjct: 92 EANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEA 151
Query: 241 ERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRF 300
RRI T+L+ M+ Q VLV+GATN P +D A+RR RF
Sbjct: 152 SRRIKTELLVQMNGVGNDSQG----------------VLVLGATNIPWQLDSAIRR--RF 193
Query: 301 DREIVLGVPDENARVQILSV 320
+R I + +PD AR + +
Sbjct: 194 ERRIYIPLPDLAARTTMFEI 213
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/211 (37%), Positives = 119/211 (56%), Gaps = 14/211 (6%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
+ D+GG+ES ++E+K V +PL HP+L + +G++P G++LYG PG GKT LA A+AN+T
Sbjct: 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMER 242
F +I +E++ G R +F A APSIVFIDEIDAI +KR + ER
Sbjct: 241 SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGER 300
Query: 243 RIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFDR 302
I ++ +++ G V VI ATN+ + +DPAL RPGR DR
Sbjct: 301 EIQRTMLELLNQLDGFDDRGD--------------VKVIMATNKIETLDPALIRPGRIDR 346
Query: 303 EIVLGVPDENARVQILSVLTRNLRVEGSFDL 333
+I+ PD + + +IL + T + + +L
Sbjct: 347 KILFENPDLSTKKKILGIHTSKMNLSEDVNL 377
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 82/215 (38%), Positives = 120/215 (55%), Gaps = 5/215 (2%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P + D+GGL+ E + + PE YEE G+ G +LYG PG GKTL+AKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR---GK 540
AN+ A F+ I G EL+ KY+G+ R +F A +P I+F DE+DA+ TKR
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
G ++R + +LL +LDG D R V VI ATN+ + +D A++RPGR + + P
Sbjct: 297 GGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 635
+ IL K + + V+L T+ +K ++LSG
Sbjct: 357 TKKKILGIHTSKMNLSEDVNLETLVTTK--DDLSG 389
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 117/215 (54%), Gaps = 5/215 (2%)
Query: 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVA 484
V ++DV G+ + E R V +K PE + + G + G LL GPPGCGKTL+AKAVA
Sbjct: 2 GVSFKDVAGMHEAKLEV-REFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 485 NEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW 544
EA F+ + G E + G VR+LF AR +PCI++ DE+DA+ KR
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 545 VV----ERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPD 600
E+ LNQLL+E+DG V V+ +TNR D++D A++RPGR + +++ LPT
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQ 180
Query: 601 ERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG 635
ER I E + + S ++ ++ SG
Sbjct: 181 ERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 112/227 (49%), Gaps = 24/227 (10%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182
F+D+ GM E++ E + L P+ LG + G LL GPPGCGKT LA A+A E
Sbjct: 5 FKDVAGMHEAKLEVR-EFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63
Query: 183 GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN----LQR 238
VPF ++ E V + G +R LF +A AP IV+IDEIDA+ KR
Sbjct: 64 QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN 123
Query: 239 EMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPG 298
E + + QL+ MD +V+V+ +TNR D +D AL RPG
Sbjct: 124 TEEEQTLNQLLVEMD-----------------GMGTTDHVIVLASTNRADILDGALMRPG 166
Query: 299 RFDREIVLGVPDENARVQILSVLTRNLRVEGS--FDLVKIARSTPGF 343
R DR + + +P R +I ++L++ S F ++A TPGF
Sbjct: 167 RLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGF 213
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 19/285 (6%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
P V WED+ G+++ + +V + P+ + G LL+GPPG GKTLI K +
Sbjct: 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCI 137
Query: 484 ANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG 543
A+++GA F I L +K+VGE E VR LF+ AR P ++F DE+D+L ++RG
Sbjct: 138 ASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEH 197
Query: 544 WVVERLLNQLLIELDGA--DKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601
R+ + L++LDGA + V+GATNRP +D A R R K LY+PLP
Sbjct: 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASA 255
Query: 602 RG-LILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSS 660
R +++ +++++ ++ I Q + SG I S +
Sbjct: 256 RKQIVINLMSKEQCCLSEEEIEQIVQQS--DAFSGADMTQLCREASLGP-----IRSLQT 308
Query: 661 SDVTPFT------IKLTHFEQALSKISPSVSELQIQRYKTLSETF 699
+D+ T I FE A + PSVS ++ Y+ ++TF
Sbjct: 309 ADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353
Score = 115 bits (289), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 111/197 (56%), Gaps = 20/197 (10%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIANE 181
++D+ G+E +K V+ P+ P + + G+R P GILL+GPPG GKT + IA++
Sbjct: 83 WEDIAGVEFAKATIKEIVVWPMLRPDI--FTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
+G F+ ISA+ + S G E+ +R LF+ A P+++FIDEID++ S+R + + E
Sbjct: 141 SGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESS 200
Query: 242 RRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFD 301
RRI T+ + +D + +LV+GATNRP +D A RR R
Sbjct: 201 RRIKTEFLVQLDGA---------------TTSSEDRILVVGATNRPQEIDEAARR--RLV 243
Query: 302 REIVLGVPDENARVQIL 318
+ + + +P+ +AR QI+
Sbjct: 244 KRLYIPLPEASARKQIV 260
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 105/186 (56%), Gaps = 5/186 (2%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNVKW DV GL+ + ++ IKFP + G LL+GPPG GK+ +AKAV
Sbjct: 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR-GILLFGPPGTGKSYLAKAV 65
Query: 484 ANEAG-ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
A EA + F I +L++K++GESE V+ LF AR P I+F DE+D+L R +
Sbjct: 66 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 125
Query: 543 GWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601
R+ + L+++ G G+ V+GATN P V+D A+ R RF K +Y+PLP P
Sbjct: 126 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHA 183
Query: 602 RGLILE 607
R + +
Sbjct: 184 RAAMFK 189
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 27/227 (11%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIAN 180
++ D+ G+E E LK VI+P+ P L + G R P GILL+GPPG GK+ LA A+A
Sbjct: 10 KWSDVAGLEGAKEALKEAVILPIKFPHL--FTGKRTPWRGILLFGPPGTGKSYLAKAVAT 67
Query: 181 E-TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQRE 239
E F+ IS++++VS G SE+ +++LF A PSI+FIDEID++ R + E
Sbjct: 68 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 127
Query: 240 MERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGR 299
RRI T+ + M + + G +LV+GATN P +D A+RR R
Sbjct: 128 AARRIKTEFLVQM-QGVGVDNDG---------------ILVLGATNIPWVLDSAIRR--R 169
Query: 300 FDREIVLGVPDENARVQILSV---LTRNLRVEGSFDLVKIARSTPGF 343
F++ I + +P+ +AR + + T+N E F ++ R T G+
Sbjct: 170 FEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFR--ELGRKTDGY 214
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 132 bits (331), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 103/185 (55%), Gaps = 5/185 (2%)
Query: 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV 483
PNVKW DV GL+ + ++ IKFP + G LL+GPPG GK+ +AKAV
Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR-GILLFGPPGTGKSYLAKAV 187
Query: 484 ANEAG-ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542
A EA + F I +L++K++GESE V+ LF AR P I+F DE+D+L R +
Sbjct: 188 ATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE 247
Query: 543 GWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601
R+ + L+++ G G+ V+GATN P V+D A+ R RF K +Y+PLP
Sbjct: 248 SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 305
Query: 602 RGLIL 606
R +
Sbjct: 306 RAAMF 310
Score = 122 bits (306), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 124/227 (54%), Gaps = 27/227 (11%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIAN 180
++ D+ G+E E LK VI+P+ P L + G R P GILL+GPPG GK+ LA A+A
Sbjct: 132 KWSDVAGLEGAKEALKEAVILPIKFPHL--FTGKRTPWRGILLFGPPGTGKSYLAKAVAT 189
Query: 181 E-TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQRE 239
E F+ IS++++VS G SE+ +++LF A PSI+FIDEID++ R + E
Sbjct: 190 EANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESE 249
Query: 240 MERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGR 299
RRI T+ + M + + G +LV+GATN P +D A+RR R
Sbjct: 250 AARRIKTEFLVQM-QGVGVDNDG---------------ILVLGATNIPWVLDSAIRR--R 291
Query: 300 FDREIVLGVPDENARVQILSV---LTRNLRVEGSFDLVKIARSTPGF 343
F++ I + +P+ +AR + + T+N E F ++ R T G+
Sbjct: 292 FEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQ--ELGRKTDGY 336
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/181 (42%), Positives = 101/181 (55%), Gaps = 9/181 (4%)
Query: 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVAN 485
VK++D+ G D + ++ PE + G LL+GPPG GKT++AKAVA
Sbjct: 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPAR-GLLLFGPPGNGKTMLAKAVAA 170
Query: 486 EAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWV 545
E+ A F +I L +KYVGE E VR LF+ AR P I+F D+VD+L +R +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 546 VERLLNQLLIELDG----ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601
RL + LIE DG D R V V+GATNRP +D AVLR RF K +YV LP +
Sbjct: 231 SRRLKTEFLIEFDGVQSAGDDR--VLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEET 286
Query: 602 R 602
R
Sbjct: 287 R 287
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 20/194 (10%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIAN 180
+F D+ G + + L+ VI+P P+L + G+R P G+LL+GPPG GKT LA A+A
Sbjct: 113 KFDDIAGQDLAKQALQEIVILPSLRPEL--FTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170
Query: 181 ETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREM 240
E+ F+ ISA + S G E+ +R LF+ A PSI+FID++D++ +R + +
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDA 230
Query: 241 ERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRF 300
RR+ T+ + D VQ VLV+GATNRP +D A+ R RF
Sbjct: 231 SRRLKTEFLIEFDG----VQSAGDDR-----------VLVMGATNRPQELDEAVLR--RF 273
Query: 301 DREIVLGVPDENAR 314
+ + + +P+E R
Sbjct: 274 IKRVYVSLPNEETR 287
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 132/280 (47%), Gaps = 12/280 (4%)
Query: 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVAN 485
V+W D+ G D + ++ PE + + G LL+GPPG GKTL+A+AVA
Sbjct: 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAK-GLLLFGPPGNGKTLLARAVAT 76
Query: 486 EAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWV 545
E A F++I L +KYVG+ E VR LF+ AR P I+F DEVD+L ++R
Sbjct: 77 ECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEA 136
Query: 546 VERLLNQLLIELDGADKRKG---VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602
RL + L+E DG + V+ ATNRP +D A LR RF K +YV LP R
Sbjct: 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194
Query: 603 GLILEALARKK--PIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSS 660
L+L L +K+ P+D L +A K + SG +
Sbjct: 195 ELLLNRLLQKQGSPLDTEA-LRRLA--KITDGYSGSDLTALAKDAALEPIRELNVEQVKC 251
Query: 661 SDVTPF-TIKLTHFEQALSKISPSVSELQIQRYKTLSETF 699
D++ I F +L +I SV+ + Y+ S+ +
Sbjct: 252 LDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 121/226 (53%), Gaps = 26/226 (11%)
Query: 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIANE 181
+ D+ G + + L+ VI+P P+L + G+R P G+LL+GPPG GKT LA A+A E
Sbjct: 20 WTDIAGQDVAKQALQEMVILPSVRPEL--FTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77
Query: 182 TGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREME 241
F ISA + S G E+ +R LF+ A PSI+FIDE+D++ S+R + + E
Sbjct: 78 CSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEAS 137
Query: 242 RRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPGYVLVIGATNRPDAVDPALRRPGRFD 301
RR+ T+ + D PG ++V+ ATNRP +D A R RF
Sbjct: 138 RRLKTEFLVEFDG-----LPGNPDGDR---------IVVLAATNRPQELDEAALR--RFT 181
Query: 302 REIVLGVPDENARVQILSVLTRNLRVEGS-FD---LVKIARSTPGF 343
+ + + +PDE R +L+ R L+ +GS D L ++A+ T G+
Sbjct: 182 KRVYVSLPDEQTRELLLN---RLLQKQGSPLDTEALRRLAKITDGY 224
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS-GASEENIRDLFSKAYR 215
P+ +LL GPP GKT LA IA E+ PF KI + + + G S A + ++ +F AY+
Sbjct: 62 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 121
Query: 216 TAPSIVFIDEID 227
+ S V +D+I+
Sbjct: 122 SQLSCVVVDDIE 133
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 18/138 (13%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL----AVRTLFSRARTCS 522
LL GPP GKT +A +A E+ FI I P+ K +G SE A++ +F A
Sbjct: 67 LLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQ 123
Query: 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR-----KGVFVIGATNRPDV 577
+ D+++ L + R N +L L K+ + + +IG T+R DV
Sbjct: 124 LSCVVVDDIERLLDYVP-----IGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV 178
Query: 578 MDRAVLRPGRFGKLLYVP 595
+ + F ++VP
Sbjct: 179 LQEMEML-NAFSTTIHVP 195
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS-GASEENIRDLFSKAYR 215
P+ +LL GPP GKT LA IA E+ PF KI + + + G S A + ++ +F AY+
Sbjct: 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYK 122
Query: 216 TAPSIVFIDEID 227
+ S V +D+I+
Sbjct: 123 SQLSCVVVDDIE 134
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 18/138 (13%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL----AVRTLFSRARTCS 522
LL GPP GKT +A +A E+ FI I P+ K +G SE A++ +F A
Sbjct: 68 LLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQ 124
Query: 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR-----KGVFVIGATNRPDV 577
+ D+++ L + + R N +L L K+ + + +IG T+R DV
Sbjct: 125 LSCVVVDDIERLL-----DYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDV 179
Query: 578 MDRAVLRPGRFGKLLYVP 595
+ + F ++VP
Sbjct: 180 LQEMEML-NAFSTTIHVP 196
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 56/120 (46%), Gaps = 24/120 (20%)
Query: 137 KMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV-- 194
+M++ PL H P+ IL+ GP G GKT++A +A PF K+ AT+
Sbjct: 37 RMQLQEPLRHEVTPK--------NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 195 VSGVSGASEENIRDLFSKAYRTAPS-----IVFIDEIDAIASK---------RENLQREM 240
V V + IRDL A + IVFIDEID I K RE +QR++
Sbjct: 89 VGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDL 148
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG-ESELAVRTLFSRARTCSP 523
L+ GP G GKT IA+ +A A A FI ++ + YVG E + +R L A
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAID 112
Query: 524 C-----ILFFDEVDALTTKRGKEGGWVVER 548
I+F DE+D + K+G+ G V R
Sbjct: 113 AVEQNGIVFIDEIDKI-CKKGEYSGADVSR 141
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT 216
P+ +LL+GPPG GKT LAH IA+E GV V SG + ++ + + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLEE 90
Query: 217 APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPG 276
I+FIDEI ++ + E L M++ + G P
Sbjct: 91 G-DILFIDEIHRLSRQAEE-----------HLYPAMEDFVMDIVIGQGPAARTIRLELPR 138
Query: 277 YVLVIGATNRPDAVD-PALRRPG 298
+ L IGAT RP + P L R G
Sbjct: 139 FTL-IGATTRPGLITAPLLSRFG 160
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCI 525
LL+GPPG GKT +A +A+E G N GP + +LA S I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----GDLAAILANS---LEEGDI 93
Query: 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGV-----FVIGATNRPDVMDR 580
LF DE+ L+ + + +E + ++I A + + +IGAT RP ++
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 581 AVLRPGRFGKLLYVPLPTPDE 601
+L RFG + ++ TP+E
Sbjct: 154 PLL--SRFGIVEHLEYYTPEE 172
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT 216
P+ +LL+GPPG GKT LAH IA+E GV V SG + ++ + + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLEE 90
Query: 217 APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPG 276
I+FIDEI ++ + E L M++ + G P
Sbjct: 91 G-DILFIDEIHRLSRQAEE-----------HLYPAMEDFVMDIVIGQGPAARTIRLELPR 138
Query: 277 YVLVIGATNRPDAVD-PALRRPG 298
+ L IGAT RP + P L R G
Sbjct: 139 FTL-IGATTRPGLITAPLLSRFG 160
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCI 525
LL+GPPG GKT +A +A+E G N GP + +LA S I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----GDLAAILANS---LEEGDI 93
Query: 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGV-----FVIGATNRPDVMDR 580
LF DE+ L+ + + +E + ++I A + + +IGAT RP ++
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 581 AVLRPGRFGKLLYVPLPTPDE 601
+L RFG + ++ TP+E
Sbjct: 154 PLL--SRFGIVEHLEYYTPEE 172
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 62/143 (43%), Gaps = 20/143 (13%)
Query: 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRT 216
P+ +LL+GPPG GKT LAH IA+E GV V SG + ++ + + +
Sbjct: 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL------RVTSGPAIEKPGDLAAILANSLEE 90
Query: 217 APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGXXXXXXXXXXXXPG 276
I+FIDEI ++ + E L M++ + G P
Sbjct: 91 G-DILFIDEIHRLSRQAEE-----------HLYPAMEDFVMDIVIGQGPAARTIRLELPR 138
Query: 277 YVLVIGATNRPDAVD-PALRRPG 298
+ L IGAT RP + P L R G
Sbjct: 139 FTL-IGATTRPGLITAPLLSRFG 160
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCI 525
LL+GPPG GKT +A +A+E G N GP + E + + + + I
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAI------EKPGDLAAILANSLEEG-DI 93
Query: 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGV-----FVIGATNRPDVMDR 580
LF DE+ L+ + + +E + ++I A + + +IGAT RP ++
Sbjct: 94 LFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITA 153
Query: 581 AVLRPGRFGKLLYVPLPTPDE 601
+L RFG + ++ TP+E
Sbjct: 154 PLL--SRFGIVEHLEYYTPEE 172
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEEN-IRDLFSKA--- 213
+ ILL GP G GKT LA +A VPF AT + +G G EN I+ L K
Sbjct: 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 111
Query: 214 -YRTAPSIVFIDEIDAIASKREN 235
+ IV+ID+ID I+ K +N
Sbjct: 112 VQKAQRGIVYIDQIDKISRKSDN 134
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 459 GVDL-ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK-YVGES-ELAVRTLF 515
GV+L ++ LL GP G GKTL+A+ +A F L YVGE E ++ L
Sbjct: 46 GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
Query: 516 SRA----RTCSPCILFFDEVDALTTK 537
+ + I++ D++D ++ K
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKISRK 131
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEEN-IRDLFSKA--- 213
+ ILL GP G GKT LA +A VPF AT + +G G EN I+ L K
Sbjct: 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYD 111
Query: 214 -YRTAPSIVFIDEIDAIASKREN 235
+ IV+ID+ID I+ K +N
Sbjct: 112 VQKAQRGIVYIDQIDKISRKSDN 134
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 459 GVDL-ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK-YVGES-ELAVRTLF 515
GV+L ++ LL GP G GKTL+A+ +A F L YVGE E ++ L
Sbjct: 46 GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
Query: 516 SRA----RTCSPCILFFDEVDALTTK 537
+ + I++ D++D ++ K
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKISRK 131
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Query: 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-SGVSGASEENIRDLFSKA---- 213
+ ILL GP G GKT +A +A +P AT + +G G ENI +A
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWN 132
Query: 214 -YRTAPSIVFIDEIDAIASKREN 235
+ IVFIDEID I+ EN
Sbjct: 133 VQKAQKGIVFIDEIDKISRLSEN 155
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK--YVGESELAVRTLFSRA-- 518
++ LL GP G GKTL+A+ +A I I L + YVGE + T +A
Sbjct: 72 KSNILLIGPTGSGKTLMAQTLAKHLDIP-IAISDATSLTEAGYVGEDVENILTRLLQASD 130
Query: 519 ---RTCSPCILFFDEVDALT 535
+ I+F DE+D ++
Sbjct: 131 WNVQKAQKGIVFIDEIDKIS 150
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 156 RPMAG--ILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVS 196
+ MAG +LL GPPG GKT LA AIA E G VPF + +EV S
Sbjct: 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGAN--FIHIKGPELLNKYVGESELAVRTLFSRA 518
LL GPPG GKT +A A+A E G+ F + G E+ + + ++E+ + F RA
Sbjct: 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMEN-FRRA 119
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 32/153 (20%)
Query: 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE 181
R D+ G E +++ LK ++ M +L GPPG GKT A A+A E
Sbjct: 23 RLDDIVGQEHIVKRLK-------------HYVKTGSMPHLLFAGPPGVGKTTAALALARE 69
Query: 182 TGVPFYKISATEVVSGVSGASEEN----IRDLFSKAYRTAP------SIVFIDEIDAIAS 231
++ + E+ AS+E IR+ + RT P I+F+DE DA+
Sbjct: 70 LFGENWRHNFLEL-----NASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ 124
Query: 232 -KRENLQREME--RRIVTQLMTCMDESHRLVQP 261
++ L+R ME V +++C + S ++++P
Sbjct: 125 DAQQALRRTMEMFSSNVRFILSC-NYSSKIIEP 156
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 21/83 (25%)
Query: 466 FLLYGPPGCGKTLIAKAVANEA-GANFIHI---------KGPELLNKYVGESELAVRTLF 515
L GPPG GKT A A+A E G N+ H +G ++ + V E F
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKE--------F 100
Query: 516 SRAR---TCSPCILFFDEVDALT 535
+R + S I+F DE DALT
Sbjct: 101 ARTKPIGGASFKIIFLDEADALT 123
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 137 KMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV-- 194
+M++ PL H P+ IL+ GP G GKT++A +A PF K+ AT+
Sbjct: 37 RMQLQEPLRHEVTPK--------NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE 88
Query: 195 VSGVSGASEENIRDLFSKAYR 215
V V + IRDL A +
Sbjct: 89 VGYVGKEVDSIIRDLTDSAMK 109
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG-ESELAVRTLFSRA 518
L+ GP G GKT IA+ +A A A FI ++ + YVG E + +R L A
Sbjct: 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 149 LPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASE--ENI 206
LP+ + + ++L+GPPG GKT LA IA +ISA V SGV E E
Sbjct: 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISA--VTSGVKEIREAIERA 98
Query: 207 RDLFSKAYRTAPSIVFIDEI 226
R + RT I+F+DE+
Sbjct: 99 RQNRNAGRRT---ILFVDEV 115
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPC- 524
+L+GPPG GKT +A+ +A A A+ I V +R RAR
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISA-------VTSGVKEIREAIERARQNRNAG 105
Query: 525 ---ILFFDEV 531
ILF DEV
Sbjct: 106 RRTILFVDEV 115
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 23/114 (20%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENI-------------R 207
+L YGPPG GKT A+A E Y + + +V ++ + + I R
Sbjct: 49 LLFYGPPGTGKTSTIVALARE----IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTR 104
Query: 208 DLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM--DESHRLV 259
+FSK ++ ++ +DE DA+ + +N R + R C+ + +H+L
Sbjct: 105 QIFSKGFK----LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 154
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 15/93 (16%)
Query: 466 FLLYGPPGCGKTLIAKAVANEA-GANFIHI---------KGPELLNKYVGESELAVRTLF 515
L YGPPG GKT A+A E G N+ ++ +G +++ + + + R +F
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIF 107
Query: 516 SRARTCSPCILFFDEVDALTTKRGKEGGWVVER 548
S+ ++ DE DA+T V+ER
Sbjct: 108 SKGFK----LIILDEADAMTNAAQNALRRVIER 136
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 161 ILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVS 196
+LL GPPG GKT LA AIA E G VPF +EV S
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYS 117
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGAN--FIHIKGPELLNKYVGESELAVRTLFSRA 518
LL GPPG GKT +A A+A E G+ F G E+ + + ++E+ F RA
Sbjct: 80 VLLAGPPGTGKTALALAIAQELGSKVPFCPXVGSEVYSTEIKKTEVLXEN-FRRA 133
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV--VSGVSGASEENIRDLFSKAYRTA 217
IL+ GP G GKT++A +A PF K+ AT+ V V + IRDL A +
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMV 110
Query: 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLM 249
+ AI R + E RI+ L+
Sbjct: 111 -------RVQAIEKNRYRAEELAEERILDVLI 135
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGESELAVRTLFSRARTCSP 523
L+ GP G GKT IA+ +A A A FI ++ + YVG + + S R +
Sbjct: 51 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDLTD 104
Query: 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLL 554
+ V A+ R + ER+L+ L+
Sbjct: 105 AAVKMVRVQAIEKNRYRAEELAEERILDVLI 135
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV--VSGVSGASEENIRDLFSKAYRTA 217
IL+ GP G GKT++A +A PF K+ AT+ V V + IRDL A +
Sbjct: 58 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMV 117
Query: 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLM 249
+ AI R + E RI+ L+
Sbjct: 118 -------RVQAIEKNRYRAEELAEERILDVLI 142
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGESELAVRTLFSRARTCSP 523
L+ GP G GKT IA+ +A A A FI ++ + YVG + + S R +
Sbjct: 58 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDLTD 111
Query: 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLL 554
+ V A+ R + ER+L+ L+
Sbjct: 112 AAVKMVRVQAIEKNRYRAEELAEERILDVLI 142
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV--VSGVSGASEENIRDLFSKAYRTA 217
IL+ GP G GKT++A +A PF K+ AT+ V V + IRDL A +
Sbjct: 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMV 111
Query: 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLM 249
+ AI R + E RI+ L+
Sbjct: 112 -------RVQAIEKNRYRAEELAEERILDVLI 136
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGESELAVRTLFSRARTCSP 523
L+ GP G GKT IA+ +A A A FI ++ + YVG + + S R +
Sbjct: 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG------KEVDSIIRDLTD 105
Query: 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLL 554
+ V A+ R + ER+L+ L+
Sbjct: 106 AAVKMVRVQAIEKNRYRAEELAEERILDVLI 136
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 22/86 (25%)
Query: 162 LLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS------GVSGA-----------SEE 204
+LYGPPG GKT AH +A E G + +A++V S GV A E
Sbjct: 81 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 140
Query: 205 NIRDLFSKAYRTAPSIVFIDEIDAIA 230
++L K + ++ +DE+D ++
Sbjct: 141 EAQNLNGKHF-----VIIMDEVDGMS 161
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 14/89 (15%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIH-----IKGPELLNKYVGES--ELAVRTLFSRAR 519
+LYGPPG GKT A VA E G + + ++ LLN V + ++V F
Sbjct: 81 MLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNE 140
Query: 520 TCSPC-----ILFFDEVDALTTKRGKEGG 543
++ DEVD ++ G GG
Sbjct: 141 EAQNLNGKHFVIIMDEVDGMSG--GDRGG 167
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
+LL GPPG GKT LAH IA+E + V SG + ++ + + R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIH------VTSGPVLVKQGDMAAILTSLERG--DV 105
Query: 221 VFIDEIDAIASKRENL 236
+FIDEI + E L
Sbjct: 106 LFIDEIHRLNKAVEEL 121
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526
LL GPPG GKT +A +A+E N GP L+ + G+ A+ T R +L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERGD-----VL 106
Query: 527 FFDEVDAL 534
F DE+ L
Sbjct: 107 FIDEIHRL 114
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
+LL GPPG GKT LAH IA+E + V SG + ++ + + R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIH------VTSGPVLVKQGDMAAILTSLERG--DV 105
Query: 221 VFIDEIDAIASKRENL 236
+FIDEI + E L
Sbjct: 106 LFIDEIHRLNKAVEEL 121
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526
LL GPPG GKT +A +A+E N GP L+ + G+ A+ T R +L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERGD-----VL 106
Query: 527 FFDEVDALT 535
F DE+ L
Sbjct: 107 FIDEIHRLN 115
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
+LL GPPG GKT LAH IA+E + V SG + ++ + + R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIH------VTSGPVLVKQGDMAAILTSLERG--DV 105
Query: 221 VFIDEIDAIASKRENL 236
+FIDEI + E L
Sbjct: 106 LFIDEIHRLNKAVEEL 121
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526
LL GPPG GKT +A +A+E N GP L+ + G+ A+ T R +L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERGD-----VL 106
Query: 527 FFDEVDAL 534
F DE+ L
Sbjct: 107 FIDEIHRL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
+LL GPPG GKT LAH IA+E + V SG + ++ + + R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIH------VTSGPVLVKQGDMAAILTSLERG--DV 105
Query: 221 VFIDEIDAIASKRENL 236
+FIDEI + E L
Sbjct: 106 LFIDEIHRLNKAVEEL 121
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526
LL GPPG GKT +A +A+E N GP L+ + G+ A+ T R +L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERGD-----VL 106
Query: 527 FFDEVDAL 534
F DE+ L
Sbjct: 107 FIDEIHRL 114
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
+LL GPPG GKT LAH IA+E + V SG + ++ + + R +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIH------VTSGPVLVKQGDMAAILTSLER--GDV 105
Query: 221 VFIDEIDAIASKRENL 236
+FIDEI + E L
Sbjct: 106 LFIDEIHRLNKAVEEL 121
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526
LL GPPG GKT +A +A+E N GP L+ + G+ A+ T R +L
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERGD-----VL 106
Query: 527 FFDEVDAL 534
F DE+ L
Sbjct: 107 FIDEIHRL 114
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 143 PLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV--VSGVSG 200
PL H P+ IL GP G GKT++A +A PF K+ AT+ V V
Sbjct: 43 PLRHEVTPK--------NILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94
Query: 201 ASEENIRDLFSKAYR 215
+ IRDL A +
Sbjct: 95 EVDSIIRDLTDSAXK 109
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG-ESELAVRTLFSRA 518
L GP G GKT IA+ +A A A FI ++ + YVG E + +R L A
Sbjct: 52 NILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 468 LYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA----RTCSP 523
++G G GK+ + V + G N I + EL + GE +R + A R +
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 100
Query: 524 CILFFDEVDALTTKRGKEGGWVV-ERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAV 582
C LF +++DA + G + V +++N L+ + AD V + G N+ + +
Sbjct: 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI--ADNPTNVQLPGMYNKQENARVPI 158
Query: 583 LRPGRFGKLLYVPL 596
+ G LY PL
Sbjct: 159 IVTGNDFSTLYAPL 172
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSI 220
+LL GPPG G+T LAH IA+E + V SG + ++ + + R +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIH------VTSGPVLVKQGDMAAILTSLERG--DV 105
Query: 221 VFIDEIDAIASKRENL 236
+FIDEI + E L
Sbjct: 106 LFIDEIHRLNKAVEEL 121
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCIL 526
LL GPPG G+T +A +A+E N GP L+ + G+ A+ T R +L
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMA-AILTSLERGD-----VL 106
Query: 527 FFDEVDALT 535
F DE+ L
Sbjct: 107 FIDEIHRLN 115
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEV-----VSG----VSGASEENIRDLFS 211
+ L GPPG GKT LA +IA G F +IS V + G GA I
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 212 KAYRTAPSIVFIDEIDAIAS 231
KA + P + +DEID ++S
Sbjct: 171 KAGKLNP-VFLLDEIDKMSS 189
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 10/80 (12%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK---------YVGESELAVRTLFS 516
L GPPG GKT +AK++A G F+ I + ++ YVG +
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMK 170
Query: 517 RARTCSPCILFFDEVDALTT 536
+A +P L DE+D +++
Sbjct: 171 KAGKLNPVFL-LDEIDKMSS 189
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 19/114 (16%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN----IRDLFSKAYRT 216
+L GPPG GKT A A+A + ++ + E+ AS+E +R + RT
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEM-----NASDERGIDVVRHKIKEFART 95
Query: 217 AP------SIVFIDEIDAI-ASKRENLQREME--RRIVTQLMTCMDESHRLVQP 261
AP I+F+DE DA+ A + L+R ME + +++C + R+++P
Sbjct: 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC-NYVSRIIEP 148
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 19/114 (16%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEEN----IRDLFSKAYRT 216
+L GPPG GKT A A+A + ++ + E+ AS+E +R + RT
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEM-----NASDERGIDVVRHKIKEFART 95
Query: 217 AP------SIVFIDEIDAI-ASKRENLQREME--RRIVTQLMTCMDESHRLVQP 261
AP I+F+DE DA+ A + L+R ME + +++C + R+++P
Sbjct: 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC-NYVSRIIEP 148
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL-----------NKYVGESELAVRTLF 515
+L G PG GKT IA+ +A + I+ + PE+L KY GE E ++ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ----IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 516 SRARTCSPCILFFD 529
R ILF D
Sbjct: 261 DEIRQAGNIILFID 274
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 156 RPMAGILLYGPPGCGKTKLAHAIA 179
RP+ + GP G GKT+LA A+A
Sbjct: 519 RPIGSFIFLGPTGVGKTELARALA 542
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 15/74 (20%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL-----------NKYVGESELAVRTLF 515
+L G PG GKT IA+ +A + I+ + PE+L KY GE E ++ +
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQ----IINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVM 260
Query: 516 SRARTCSPCILFFD 529
R ILF D
Sbjct: 261 DEIRQAGNIILFID 274
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 160 GILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASEENIRDLFSKAYRTA 217
+L+ G PG GKT +A +A G PF I+ +E+ S E + + ++A+R +
Sbjct: 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS-----LEMSKTEALTQAFRRS 126
Query: 218 PSI---------VFIDEIDAIASKRENL 236
+ V + EID I S+ +
Sbjct: 127 IGVRIKAGAVHTVSLHEIDVINSRTQGF 154
>pdb|4EUN|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502144
From Janibacter Sp. Htcc2649), Unliganded Structure
Length = 200
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA 191
P +++ G G GKT +AH +A+ETG+ F + A
Sbjct: 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADA 62
>pdb|2ZE5|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase
pdb|2ZE6|A Chain A, Crystal Structure Of Adenosine
Phosphate-isopentenyltransferase Complexed With
Substrate Analog, Dmaspp
pdb|2ZE7|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With Zinc Ion
And Substrate Analog, Dmaspp
pdb|2ZE8|A Chain A, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|B Chain B, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|C Chain C, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
pdb|2ZE8|D Chain D, Crystal Structure Of Adenosine
Phosphate-Isopentenyltransferase Complexed With
Diphosphate
Length = 253
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 162 LLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGAS 202
L+YGP GKT +A IA ETG P + + ++ S
Sbjct: 5 LIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGS 45
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA 217
+ ILL G PG GKT L +A+++G+ + + A EE + D + + Y
Sbjct: 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL--------AREEQLYDGYDEEYDCP 62
Query: 218 PSIVFIDEIDAIASKRENLQRE 239
+DE D + + +N RE
Sbjct: 63 ----ILDE-DRVVDELDNQMRE 79
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHI 494
LL G PG GKT + K +A+++G +I++
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 19/90 (21%)
Query: 161 ILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASEENIRDLFSKAYRTA- 217
+L+ G PG GKT +A A G PF I+ +E+ S E + + ++A+R +
Sbjct: 88 VLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFS-----LEXSKTEALTQAFRRSI 142
Query: 218 --------PSIVF---IDEIDAIASKRENL 236
P +V + EID I S+ +
Sbjct: 143 GVRIKEGPPGVVHTVSLHEIDVINSRTQGF 172
>pdb|3ECC|A Chain A, Crystal Structure Of The Dnac Helicase Loader In Complex
With Adp-Bef3
Length = 185
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 160 GILLYGPPGCGKTKLA----HAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
G+ G PG GKT LA AI + G+ Y +++ + +E F K
Sbjct: 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL 99
Query: 216 TAPSIVFIDEIDAIASKR-ENLQREMERRIVT 246
+P +V +D + S+R + QRE+ I+T
Sbjct: 100 NSPVLV----LDDLGSERLSDWQRELISYIIT 127
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 32.7 bits (73), Expect = 0.80, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVP 185
+LL G PG GK+ +A A+AN GVP
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVP 36
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499
LL G PG GK+ IA+A+AN G +H +L
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 27/170 (15%)
Query: 467 LLYGPPGCGKTLIAKAVANE----------AGANFIHIKGPELL--NKYVGESELAVRTL 514
+L G PG GKT I + +A G + ++ LL KY GE E ++ +
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 515 FSR-ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573
++ ILF DE+ + EG +L L R + +IGAT
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-------ARGELRLIGATT 170
Query: 574 ----RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV 619
R D A+ R RF + +YV PT +E IL L K + V
Sbjct: 171 LDEYREIEKDPALER--RF-QPVYVDEPTVEETISILRGLKEKYEVHHGV 217
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 17/87 (19%)
Query: 156 RPMAGILLYGPPGCGKTKLAHAIAN---ETGVPFYKISATE-----VVSGVSGAS----- 202
RP+ L GP G GKT+LA +A +T +I TE VS + GA
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 645
Query: 203 -EENIRDLFSKAYRTAP-SIVFIDEID 227
EE + ++A R P S++ DEI+
Sbjct: 646 YEEGGQ--LTEAVRRRPYSVILFDEIE 670
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 27/170 (15%)
Query: 467 LLYGPPGCGKTLIAKAVANE----------AGANFIHIKGPELL--NKYVGESELAVRTL 514
+L G PG GKT I + +A G + ++ LL KY GE E ++ +
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 515 FSR-ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573
++ ILF DE+ + EG +L L R + +IGAT
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL-------ARGELRLIGATT 307
Query: 574 ----RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV 619
R D A+ R RF + +YV PT +E IL L K + V
Sbjct: 308 LDEYREIEKDPALER--RF-QPVYVDEPTVEETISILRGLKEKYEVHHGV 354
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 73/187 (39%), Gaps = 30/187 (16%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEV-VSGVSGASEENIRDLFSKAYRTAPS 219
IL GP G GKT LA+ I+ E +A + SG A N+ +
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXIEKSGDLAAILTNLSE---------GD 108
Query: 220 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL-VQPGXXXXXXXXXXXXPGYV 278
I+FIDEI ++ + +++ E +RL + G P +
Sbjct: 109 ILFIDEIHRLSPA------------IEEVLYPAXEDYRLDIIIGSGPAAQTIKIDLPKFT 156
Query: 279 LVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILS----VLTRNLRVEGSFDLV 334
L IGAT R + LR RF + L ++ IL L + + + ++
Sbjct: 157 L-IGATTRAGXLSNPLR--DRFGXQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIA 213
Query: 335 KIARSTP 341
K +RSTP
Sbjct: 214 KRSRSTP 220
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA 217
+ ILL G PG GKT L +A+++G+ + + A EE + D + + Y
Sbjct: 4 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL--------AREEQLYDGYDEEYDCP 55
Query: 218 PSIVFIDEIDAIASKRENLQRE 239
+DE D + + +N RE
Sbjct: 56 ----ILDE-DRVVDELDNQMRE 72
Score = 30.4 bits (67), Expect = 4.0, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 467 LLYGPPGCGKTLIAKAVANEAGANFIHI 494
LL G PG GKT + K +A+++G +I++
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga
Maritima Replication Initiation Protein Dnaa
Length = 440
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 161 ILLYGPPGCGKTKLAHAIAN-----ETGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
+ +YG G GKT L +I N E + I++ + ++ + + +E + F + YR
Sbjct: 133 LFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYR 192
Query: 216 TAPSIVFIDEIDAIASK 232
I+ ID++ + K
Sbjct: 193 KKVDILLIDDVQFLIGK 209
>pdb|3EC2|A Chain A, Crystal Structure Of The Dnac Helicase Loader
Length = 180
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 160 GILLYGPPGCGKTKLA----HAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYR 215
G+ G PG GKT LA AI + G+ Y +++ + +E F K
Sbjct: 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLXDEGKDTKFLKTVL 99
Query: 216 TAPSIVFIDEIDAIASKR-ENLQREMERRIVT 246
+P +V +D + S+R + QRE+ I+T
Sbjct: 100 NSPVLV----LDDLGSERLSDWQRELISYIIT 127
>pdb|1GVN|B Chain B, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|1GVN|D Chain D, Crystal Structure Of The Plasmid Maintenance System
EpsilonZETA: MEACHNISM OF TOXIN INACTIVATION AND TOXIN
Function
pdb|3Q8X|B Chain B, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
pdb|3Q8X|D Chain D, Structure Of A Toxin-Antitoxin System Bound To Its
Substrate
Length = 287
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494
V+ T FLL G PG GKT + A+ E N I I
Sbjct: 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 64
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 27/165 (16%)
Query: 465 GFLLYGPPGCGKTLIAK------AVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA 518
G +L GPPG GKT+I ++ + G NF E + + V T S+
Sbjct: 1050 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTT--SKG 1107
Query: 519 RTCSP------CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR--------K 564
T P +LF DE++ K K G V L QL+ E G K +
Sbjct: 1108 LTLLPKSDIKNLVLFCDEINL--PKLDKYGSQNVVLFLRQLM-EKQGFWKTPENKWVTIE 1164
Query: 565 GVFVIGATNRPDVMDRAVL--RPGRFGKLLYVPLPTPDERGLILE 607
+ ++GA N P R + R R +LY+ P+ I E
Sbjct: 1165 RIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1209
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 160 GILLYGPPGCGKTKLA-HAIANET-----GVPFYKISATE 193
GI+L GPPG GKT + +A+ N + G+ F K + TE
Sbjct: 1050 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE 1089
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 27/165 (16%)
Query: 465 GFLLYGPPGCGKTLIAK------AVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA 518
G +L GPPG GKT+I ++ + G NF E + + V T S+
Sbjct: 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTT--SKG 1326
Query: 519 RTCSP------CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR--------K 564
T P +LF DE++ K K G V L QL+ E G K +
Sbjct: 1327 LTLLPKSDIKNLVLFCDEINL--PKLDKYGSQNVVLFLRQLM-EKQGFWKTPENKWVTIE 1383
Query: 565 GVFVIGATNRPDVMDRAVL--RPGRFGKLLYVPLPTPDERGLILE 607
+ ++GA N P R + R R +LY+ P+ I E
Sbjct: 1384 RIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYE 1428
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 160 GILLYGPPGCGKTKLA-HAIANET-----GVPFYKISATE 193
GI+L GPPG GKT + +A+ N + G+ F K + TE
Sbjct: 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTE 1308
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS----GVSGASEENIRDLFSKA 213
M +++ G PG GKT H +A+E Y E+ + G+ + I+ K
Sbjct: 42 MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQ-IKHFAQKK 100
Query: 214 YRTAPS---IVFIDEIDAI-ASKRENLQREME-RRIVTQLMTCMDESHRLVQP 261
P IV +DE D++ A ++ L+R ME T+ ++S+++++P
Sbjct: 101 LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEP 153
>pdb|2RGX|A Chain A, Crystal Structure Of Adenylate Kinase From Aquifex
Aeolicus In Complex With Ap5a
pdb|2RH5|A Chain A, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|C Chain C, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|2RH5|B Chain B, Structure Of Apo Adenylate Kinase From Aquifex Aeolicus
pdb|3SR0|A Chain A, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
pdb|3SR0|B Chain B, Crystal Structure Of The Phosphoryl Transfer Transition
State Mimic In The Adenylate Kinase: AdpALF4AMP IN THE
ACTIVE SITE
Length = 206
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504
+ GPPG GK AK +A E G F+HI ++L + V
Sbjct: 3 LVFLGPPGAGKGTQAKRLAKEKG--FVHISTGDILREAV 39
>pdb|2EWV|A Chain A, Crystal Structure Of The Pilus Retraction Motor Pilt And
Bound Adp
Length = 372
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 59/156 (37%), Gaps = 35/156 (22%)
Query: 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGK--------- 171
P F+ LG + VLE L H R M IL+ GP G GK
Sbjct: 117 PEFKKLGLPDKVLE---------LCH---------RKMGLILVTGPTGSGKSTTIASMID 158
Query: 172 ----TKLAHAIANETGVPF-YKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEI 226
TK H I E + + +K + V G ++ D A R P ++F+ E+
Sbjct: 159 YINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVGEM 218
Query: 227 DAIASKRENLQREMERRIVTQLM---TCMDESHRLV 259
+ + L+ +V + T +D HR+V
Sbjct: 219 RDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIV 254
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 467 LLYGPPGCGKTLIAKAVANE----------AGANFIHIKGPELL--NKYVGESELAVRTL 514
LL G G GKT IA+ +A A + LL KY G+ E + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 515 FSRARTCSPCILFFDEVDALTTKRGKEGGWV 545
+ + ILF DE+ + GG V
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQV 301
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 162 LLYGPPGCGKTKLAHAIA---NETGVP-------FYKISATEVVSGVS--GASEENIRDL 209
LL G G GKT +A +A + VP Y + +++G G E+ + L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 210 FSKAYRTAPSIVFIDEIDAI 229
+ + SI+FIDEI I
Sbjct: 271 LKQLEQDTNSILFIDEIHTI 290
>pdb|1P4S|A Chain A, Solution Structure Of Mycobacterium Tuberculosis Adenylate
Kinase
Length = 181
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194
+LL GPPG GK A +A + G+P +IS E+
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIP--QISTGEL 34
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 155 VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV-VSGVSGASEENIRDLFSKA 213
++P + L GP G GKT + + + FY + ++ V G+ +IR + +
Sbjct: 378 IKPGQKVALVGPTGSGKTTIVNLLMR-----FYDVDRGQILVDGI------DIRKIKRSS 426
Query: 214 YRTAPSIVFIDEIDAIASKRENLQ 237
R++ IV D I + +ENL+
Sbjct: 427 LRSSIGIVLQDTILFSTTVKENLK 450
>pdb|2CDN|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Adenylate
Kinase Complexed With Two Molecules Of Adp And Mg
Length = 201
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194
+LL GPPG GK A +A + G+P +IS E+
Sbjct: 23 VLLLGPPGAGKGTQAVKLAEKLGIP--QISTGEL 54
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 466 FLLYGP-PGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504
+L+ P PG GKT +AKA+ ++ A+ + + G + +V
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFV 89
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 29/133 (21%)
Query: 468 LYGPPGCGKTLIA-KAVANEAGANFI-------HIKGPELLNKY-------------VGE 506
+YGP GKT +A AVAN A I H PE K GE
Sbjct: 66 IYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE 125
Query: 507 SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW------VVERLLNQLLIELDGA 560
L + + R+ I+ D V AL + EG + RL++Q L ++ GA
Sbjct: 126 QALEIADMLVRSGALD--IIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183
Query: 561 DKRKGVFVIGATN 573
G I N
Sbjct: 184 LNNSGTTAIFINN 196
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 29/129 (22%)
Query: 468 LYGPPGCGKTLIA-KAVANEAGANFI-------HIKGPELLNKY-------------VGE 506
+YGP GKT +A AVAN A I H PE K GE
Sbjct: 66 IYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE 125
Query: 507 SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW------VVERLLNQLLIELDGA 560
L + + R+ I+ D V AL + EG + RL++Q L ++ GA
Sbjct: 126 QALEIADMLVRSGALD--IIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183
Query: 561 DKRKGVFVI 569
G I
Sbjct: 184 LNNSGTTAI 192
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 29/129 (22%)
Query: 468 LYGPPGCGKTLIA-KAVANEAGANFI-------HIKGPELLNKY-------------VGE 506
+YGP GKT +A AVAN A I H PE K GE
Sbjct: 66 IYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE 125
Query: 507 SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW------VVERLLNQLLIELDGA 560
L + + R+ I+ D V AL + EG + RL++Q L ++ GA
Sbjct: 126 QALEIADMLVRSGALD--IIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183
Query: 561 DKRKGVFVI 569
G I
Sbjct: 184 LNNSGTTAI 192
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 48/129 (37%), Gaps = 29/129 (22%)
Query: 468 LYGPPGCGKTLIA-KAVANEAGANFI-------HIKGPELLNKY-------------VGE 506
+YGP GKT +A AVAN A I H PE K GE
Sbjct: 66 IYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE 125
Query: 507 SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGW------VVERLLNQLLIELDGA 560
L + + R+ I+ D V AL + EG + RL++Q L ++ GA
Sbjct: 126 QALEIADMLVRSGALD--IIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGA 183
Query: 561 DKRKGVFVI 569
G I
Sbjct: 184 LNNSGTTAI 192
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 20/120 (16%)
Query: 161 ILLYGPPGCGKTKLAHAIANET-GVPFYKISATEV-VSGVSGAS--EENIRDLFSKAYRT 216
+L YGPPG GKT A+ E G K E+ S G S E +++ F++ +
Sbjct: 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKN-FARLTVS 119
Query: 217 APS-------------IVFIDEIDAI-ASKRENLQREMERRI-VTQLMTCMDESHRLVQP 261
PS I+ +DE D++ A + L+R ME VT+ + R++ P
Sbjct: 120 KPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDP 179
>pdb|2I3B|A Chain A, Solution Structure Of A Human Cancer-Related Nucleoside
Triphosphatase
Length = 189
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 161 ILLYGPPGCGKTKLAHA---IANETGVPFYKISATEVVSG 197
+ L GPPG GKT L H + +GVP EV G
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQG 43
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYK---ISATEVVSGVSGASEENIRDLFSKAY 214
IL P G K+ I NE G P YK +SA +VV G+ A E D F K +
Sbjct: 100 ILFLDPSG----KVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAFRKKH 152
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 161 ILLYGPPGCGKTKLAHAIANETGVPFYK---ISATEVVSGVSGASEENIRDLFSKAY 214
IL P G K+ I NE G P YK +SA +VV G+ A E D F K +
Sbjct: 107 ILFLDPSG----KVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAFRKKH 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,774,139
Number of Sequences: 62578
Number of extensions: 695627
Number of successful extensions: 2217
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1912
Number of HSP's gapped (non-prelim): 226
length of query: 702
length of database: 14,973,337
effective HSP length: 106
effective length of query: 596
effective length of database: 8,340,069
effective search space: 4970681124
effective search space used: 4970681124
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)