Query 045279
Match_columns 702
No_of_seqs 574 out of 4262
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733 Nuclear AAA ATPase (VC 100.0 6E-111 1E-115 877.3 54.7 568 119-700 185-789 (802)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.8E-93 3.8E-98 759.4 45.8 512 119-698 180-692 (693)
3 TIGR01243 CDC48 AAA family ATP 100.0 2.4E-78 5.1E-83 703.4 55.0 551 119-701 173-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 3.8E-76 8.2E-81 631.0 43.3 535 127-700 404-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 9.1E-68 2E-72 561.1 41.9 515 124-697 408-933 (952)
6 COG0464 SpoVK ATPases of the A 100.0 2.1E-60 4.5E-65 532.1 44.5 489 142-695 2-492 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 7.5E-56 1.6E-60 440.9 22.9 251 419-682 141-394 (406)
8 KOG0738 AAA+-type ATPase [Post 100.0 4.6E-50 1E-54 401.1 22.7 280 418-702 201-491 (491)
9 COG1222 RPT1 ATP-dependent 26S 100.0 3.3E-47 7.2E-52 379.2 22.7 249 115-412 142-393 (406)
10 KOG0727 26S proteasome regulat 100.0 4.9E-46 1.1E-50 351.7 19.1 249 421-682 147-398 (408)
11 KOG0734 AAA+-type ATPase conta 100.0 5.5E-46 1.2E-50 384.0 20.9 244 424-681 299-542 (752)
12 KOG0739 AAA+-type ATPase [Post 100.0 2.3E-46 5.1E-51 361.8 14.1 278 419-701 123-437 (439)
13 CHL00195 ycf46 Ycf46; Provisio 100.0 1.8E-42 3.9E-47 377.2 42.6 396 218-699 82-484 (489)
14 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-44 2.5E-49 386.3 22.2 257 112-415 422-678 (693)
15 KOG0728 26S proteasome regulat 100.0 1.1E-44 2.5E-49 342.1 18.9 256 421-689 139-397 (404)
16 KOG0741 AAA+-type ATPase [Post 100.0 2.6E-43 5.7E-48 363.8 25.0 444 118-607 213-683 (744)
17 KOG0733 Nuclear AAA ATPase (VC 100.0 1.7E-43 3.6E-48 371.3 22.9 271 112-415 499-773 (802)
18 COG0542 clpA ATP-binding subun 100.0 2.1E-43 4.6E-48 392.2 24.3 457 122-656 168-761 (786)
19 KOG0729 26S proteasome regulat 100.0 1.6E-43 3.4E-48 337.1 16.2 250 418-680 166-418 (435)
20 KOG0726 26S proteasome regulat 100.0 1.4E-43 3E-48 341.5 13.9 249 420-681 176-427 (440)
21 KOG0652 26S proteasome regulat 100.0 2.4E-42 5.1E-47 328.2 16.8 247 422-681 164-413 (424)
22 KOG0738 AAA+-type ATPase [Post 100.0 6.4E-42 1.4E-46 342.8 20.4 273 113-416 201-474 (491)
23 PRK11034 clpA ATP-dependent Cl 100.0 2.7E-41 5.8E-46 385.3 27.0 458 122-656 184-722 (758)
24 TIGR02639 ClpA ATP-dependent C 100.0 5.5E-41 1.2E-45 389.0 29.8 455 122-656 180-718 (731)
25 KOG0731 AAA+-type ATPase conta 100.0 3.2E-41 7E-46 371.5 21.7 244 424-681 306-554 (774)
26 KOG0739 AAA+-type ATPase [Post 100.0 9E-42 1.9E-46 330.0 14.9 296 101-415 110-420 (439)
27 PTZ00454 26S protease regulato 100.0 2.6E-40 5.7E-45 353.4 24.5 250 421-683 137-389 (398)
28 KOG0736 Peroxisome assembly fa 100.0 2.3E-40 5E-45 356.1 22.6 268 118-416 666-937 (953)
29 KOG0737 AAA+-type ATPase [Post 100.0 1.8E-40 3.8E-45 333.5 20.2 274 424-701 87-382 (386)
30 COG1223 Predicted ATPase (AAA+ 100.0 5.1E-40 1.1E-44 312.5 17.8 243 422-683 114-358 (368)
31 COG0465 HflB ATP-dependent Zn 100.0 1.4E-39 3E-44 353.6 19.9 244 423-680 144-390 (596)
32 KOG0734 AAA+-type ATPase conta 100.0 2.3E-39 5E-44 335.0 20.1 226 118-361 298-523 (752)
33 PRK03992 proteasome-activating 100.0 1E-38 2.2E-43 343.7 24.9 254 420-686 122-378 (389)
34 PTZ00361 26 proteosome regulat 100.0 2.2E-38 4.7E-43 340.1 22.7 248 421-681 175-425 (438)
35 TIGR03345 VI_ClpV1 type VI sec 100.0 6.2E-38 1.3E-42 364.9 27.7 471 121-655 184-836 (852)
36 CHL00095 clpC Clp protease ATP 100.0 8E-38 1.7E-42 366.5 28.3 470 122-656 177-788 (821)
37 KOG0727 26S proteasome regulat 100.0 2.6E-37 5.6E-42 292.6 19.0 229 117-362 148-379 (408)
38 PRK10865 protein disaggregatio 100.0 3.4E-36 7.4E-41 351.7 32.0 472 122-656 176-835 (857)
39 KOG0740 AAA+-type ATPase [Post 100.0 7.5E-38 1.6E-42 326.9 15.4 277 421-702 145-426 (428)
40 KOG0737 AAA+-type ATPase [Post 100.0 2.4E-37 5.1E-42 311.0 18.1 233 118-367 86-319 (386)
41 TIGR03346 chaperone_ClpB ATP-d 100.0 2.1E-36 4.5E-41 355.4 29.0 473 122-657 171-833 (852)
42 KOG0728 26S proteasome regulat 100.0 3.8E-37 8.1E-42 291.2 17.6 245 118-411 141-388 (404)
43 KOG0651 26S proteasome regulat 100.0 3.8E-38 8.3E-43 307.4 10.9 245 425-682 128-375 (388)
44 KOG0732 AAA+-type ATPase conta 100.0 9.8E-37 2.1E-41 344.1 23.0 389 117-538 258-669 (1080)
45 TIGR01241 FtsH_fam ATP-depende 100.0 3.2E-36 7E-41 335.7 24.6 246 422-681 48-296 (495)
46 KOG0726 26S proteasome regulat 100.0 3.5E-37 7.5E-42 297.3 14.3 246 118-412 179-427 (440)
47 KOG0735 AAA+-type ATPase [Post 100.0 1.7E-36 3.8E-41 323.1 20.3 234 118-368 661-894 (952)
48 KOG0741 AAA+-type ATPase [Post 100.0 6E-37 1.3E-41 316.9 16.3 268 424-693 214-505 (744)
49 KOG0652 26S proteasome regulat 100.0 2.2E-36 4.7E-41 287.5 15.8 229 117-362 164-395 (424)
50 KOG0731 AAA+-type ATPase conta 100.0 6.7E-36 1.4E-40 329.6 20.0 227 118-362 305-536 (774)
51 TIGR03689 pup_AAA proteasome A 100.0 3E-35 6.6E-40 319.6 24.9 253 421-680 174-478 (512)
52 TIGR01242 26Sp45 26S proteasom 100.0 2.5E-35 5.4E-40 316.6 23.9 247 421-680 114-363 (364)
53 PTZ00454 26S protease regulato 100.0 3.1E-35 6.7E-40 314.4 24.0 247 117-412 138-387 (398)
54 KOG0729 26S proteasome regulat 100.0 7.9E-36 1.7E-40 284.6 15.4 228 117-361 170-400 (435)
55 CHL00176 ftsH cell division pr 100.0 8.6E-35 1.9E-39 326.7 22.2 243 424-680 178-423 (638)
56 COG1223 Predicted ATPase (AAA+ 100.0 9.8E-35 2.1E-39 276.5 18.5 220 118-360 115-336 (368)
57 PRK03992 proteasome-activating 100.0 5.7E-34 1.2E-38 306.8 23.6 254 115-417 122-378 (389)
58 TIGR01243 CDC48 AAA family ATP 100.0 8.8E-34 1.9E-38 330.3 25.6 270 116-416 445-715 (733)
59 PTZ00361 26 proteosome regulat 100.0 2E-33 4.3E-38 301.8 23.1 247 117-412 176-425 (438)
60 COG0464 SpoVK ATPases of the A 100.0 2.1E-33 4.5E-38 314.4 23.9 253 115-415 233-487 (494)
61 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.7E-34 1.9E-38 332.1 20.9 211 452-681 1619-1878(2281)
62 KOG0732 AAA+-type ATPase conta 100.0 8.1E-34 1.8E-38 320.6 18.9 264 421-686 257-531 (1080)
63 COG0465 HflB ATP-dependent Zn 100.0 1.4E-33 3E-38 306.9 19.0 227 118-362 144-373 (596)
64 PRK10733 hflB ATP-dependent me 100.0 4.3E-33 9.3E-38 317.2 23.5 245 425-683 148-395 (644)
65 CHL00195 ycf46 Ycf46; Provisio 100.0 9E-33 1.9E-37 301.3 24.7 242 119-415 223-467 (489)
66 PLN00020 ribulose bisphosphate 100.0 2.7E-31 5.8E-36 270.3 25.2 249 427-680 113-391 (413)
67 TIGR01241 FtsH_fam ATP-depende 100.0 1E-31 2.2E-36 299.5 22.5 245 118-412 49-296 (495)
68 TIGR01242 26Sp45 26S proteasom 100.0 3.5E-31 7.5E-36 284.5 23.6 229 117-362 115-346 (364)
69 TIGR03689 pup_AAA proteasome A 100.0 7.1E-31 1.5E-35 285.5 23.1 191 117-324 175-380 (512)
70 KOG0740 AAA+-type ATPase [Post 100.0 1.2E-31 2.6E-36 280.3 15.7 271 111-418 140-411 (428)
71 CHL00176 ftsH cell division pr 100.0 7.1E-31 1.5E-35 295.2 21.6 244 118-411 177-423 (638)
72 KOG0651 26S proteasome regulat 100.0 1.2E-30 2.6E-35 255.0 13.0 227 118-361 126-355 (388)
73 PRK10733 hflB ATP-dependent me 100.0 1.8E-28 3.9E-33 279.4 23.2 245 119-413 147-394 (644)
74 CHL00206 ycf2 Ycf2; Provisiona 100.0 8.5E-29 1.8E-33 290.6 20.3 195 148-362 1620-1860(2281)
75 PLN00020 ribulose bisphosphate 100.0 4.3E-28 9.2E-33 247.0 20.5 231 121-361 112-353 (413)
76 KOG1051 Chaperone HSP104 and r 99.9 1.4E-24 3.1E-29 245.3 21.6 470 122-654 184-838 (898)
77 CHL00181 cbbX CbbX; Provisiona 99.9 1.5E-23 3.2E-28 216.0 20.0 238 428-675 22-281 (287)
78 TIGR02880 cbbX_cfxQ probable R 99.9 1.9E-22 4.1E-27 208.1 16.4 237 430-676 23-281 (284)
79 CHL00181 cbbX CbbX; Provisiona 99.9 2.2E-22 4.9E-27 207.2 16.6 217 123-366 22-261 (287)
80 TIGR02881 spore_V_K stage V sp 99.9 9.3E-22 2E-26 201.7 19.3 218 427-655 4-244 (261)
81 TIGR02880 cbbX_cfxQ probable R 99.9 7.3E-22 1.6E-26 203.7 17.1 217 123-366 20-260 (284)
82 TIGR02881 spore_V_K stage V sp 99.9 2E-21 4.4E-26 199.1 18.6 217 122-366 4-245 (261)
83 PF00004 AAA: ATPase family as 99.9 3.4E-21 7.4E-26 176.3 14.7 130 466-596 1-132 (132)
84 KOG0744 AAA+-type ATPase [Post 99.9 1.1E-21 2.5E-26 193.2 11.6 237 427-679 140-413 (423)
85 KOG0742 AAA+-type ATPase [Post 99.8 2.7E-20 5.8E-25 188.3 16.8 209 427-647 353-590 (630)
86 KOG0743 AAA+-type ATPase [Post 99.8 3.1E-20 6.7E-25 193.0 17.0 206 426-641 198-412 (457)
87 PF05496 RuvB_N: Holliday junc 99.8 6.5E-20 1.4E-24 176.1 16.0 202 122-354 22-224 (233)
88 COG2256 MGS1 ATPase related to 99.8 7E-20 1.5E-24 187.0 16.6 232 424-701 19-259 (436)
89 PF00004 AAA: ATPase family as 99.8 5.4E-20 1.2E-24 168.4 13.6 131 161-308 1-132 (132)
90 COG0466 Lon ATP-dependent Lon 99.8 1.1E-19 2.4E-24 197.2 17.1 249 52-322 220-508 (782)
91 KOG0743 AAA+-type ATPase [Post 99.8 6.7E-20 1.4E-24 190.5 14.6 206 120-350 197-411 (457)
92 KOG0742 AAA+-type ATPase [Post 99.8 4.6E-19 9.9E-24 179.5 17.8 207 123-356 354-589 (630)
93 TIGR00763 lon ATP-dependent pr 99.8 4.6E-18 1E-22 198.9 19.6 232 429-679 320-585 (775)
94 PF05496 RuvB_N: Holliday junc 99.8 9.1E-18 2E-22 161.4 16.4 188 424-643 19-223 (233)
95 KOG0744 AAA+-type ATPase [Post 99.8 1.1E-18 2.4E-23 172.3 10.0 184 122-324 140-342 (423)
96 COG2255 RuvB Holliday junction 99.8 9E-18 1.9E-22 163.8 16.0 205 120-355 22-227 (332)
97 COG2256 MGS1 ATPase related to 99.7 2.3E-17 5.1E-22 168.7 16.7 147 120-321 20-175 (436)
98 KOG2004 Mitochondrial ATP-depe 99.7 2.2E-17 4.8E-22 178.2 14.5 176 124-323 411-597 (906)
99 TIGR00763 lon ATP-dependent pr 99.7 1.5E-17 3.4E-22 194.5 14.1 217 124-364 320-559 (775)
100 TIGR02639 ClpA ATP-dependent C 99.7 9.1E-17 2E-21 187.2 19.8 244 426-700 179-453 (731)
101 PRK00080 ruvB Holliday junctio 99.7 3.1E-16 6.6E-21 166.4 20.8 216 425-683 21-253 (328)
102 PRK05342 clpX ATP-dependent pr 99.7 2E-16 4.3E-21 170.1 18.7 238 431-674 73-399 (412)
103 TIGR00635 ruvB Holliday juncti 99.7 3.4E-16 7.4E-21 164.9 18.8 211 427-680 2-229 (305)
104 PRK11034 clpA ATP-dependent Cl 99.7 5.1E-16 1.1E-20 178.3 19.4 245 426-699 183-456 (758)
105 KOG2028 ATPase related to the 99.7 4.6E-16 9.9E-21 155.9 16.2 232 425-701 134-389 (554)
106 TIGR00635 ruvB Holliday juncti 99.7 1E-15 2.2E-20 161.2 18.6 204 122-356 2-206 (305)
107 PRK14956 DNA polymerase III su 99.7 1E-15 2.2E-20 164.8 18.5 185 120-356 14-227 (484)
108 COG2255 RuvB Holliday junction 99.7 3.5E-15 7.6E-20 145.8 20.5 215 424-681 21-252 (332)
109 PRK10787 DNA-binding ATP-depen 99.7 1.4E-15 3E-20 176.2 20.7 218 124-364 322-560 (784)
110 PRK00080 ruvB Holliday junctio 99.7 1.1E-15 2.3E-20 162.3 18.1 206 120-356 21-227 (328)
111 PRK14956 DNA polymerase III su 99.7 3.8E-16 8.3E-21 168.0 14.6 180 424-643 13-221 (484)
112 TIGR00382 clpX endopeptidase C 99.7 8.8E-16 1.9E-20 164.0 17.2 239 430-674 78-405 (413)
113 PRK14962 DNA polymerase III su 99.7 9.3E-16 2E-20 168.1 16.0 205 424-680 9-242 (472)
114 TIGR00390 hslU ATP-dependent p 99.7 8.5E-16 1.8E-20 161.3 14.9 244 430-680 13-430 (441)
115 PRK13342 recombination factor 99.7 2.6E-15 5.5E-20 164.1 18.6 219 425-700 8-239 (413)
116 KOG0989 Replication factor C, 99.7 5.9E-16 1.3E-20 152.8 11.4 192 420-649 27-235 (346)
117 PRK07003 DNA polymerase III su 99.6 3E-15 6.6E-20 166.6 18.0 186 121-358 13-227 (830)
118 PRK12323 DNA polymerase III su 99.6 1.4E-15 3.1E-20 167.2 15.0 186 120-357 12-231 (700)
119 PRK05201 hslU ATP-dependent pr 99.6 1.8E-15 4E-20 158.9 15.1 244 430-680 16-432 (443)
120 KOG2004 Mitochondrial ATP-depe 99.6 1.6E-15 3.4E-20 164.1 14.5 216 427-653 409-653 (906)
121 COG0466 Lon ATP-dependent Lon 99.6 2.8E-15 6E-20 163.4 16.2 240 427-681 321-585 (782)
122 PRK10787 DNA-binding ATP-depen 99.6 4.3E-15 9.4E-20 172.1 18.8 230 428-681 321-583 (784)
123 TIGR02902 spore_lonB ATP-depen 99.6 3.5E-15 7.6E-20 166.9 16.8 213 423-680 59-332 (531)
124 TIGR02902 spore_lonB ATP-depen 99.6 4.1E-15 8.9E-20 166.4 16.9 208 120-359 61-312 (531)
125 PRK12323 DNA polymerase III su 99.6 1.4E-15 3E-20 167.3 12.4 185 425-646 12-230 (700)
126 PRK14960 DNA polymerase III su 99.6 9.8E-15 2.1E-19 161.1 18.1 185 121-357 12-225 (702)
127 PRK14962 DNA polymerase III su 99.6 1.7E-14 3.6E-19 158.2 19.9 183 120-354 10-221 (472)
128 PRK14949 DNA polymerase III su 99.6 1.1E-14 2.4E-19 165.3 18.3 190 121-356 13-225 (944)
129 PRK07003 DNA polymerase III su 99.6 2E-14 4.4E-19 160.0 20.1 185 425-646 12-225 (830)
130 PRK14961 DNA polymerase III su 99.6 8.3E-15 1.8E-19 157.2 15.9 203 425-679 12-243 (363)
131 PRK14960 DNA polymerase III su 99.6 6.1E-15 1.3E-19 162.7 14.8 180 425-644 11-219 (702)
132 PRK07994 DNA polymerase III su 99.6 1.7E-14 3.7E-19 161.8 18.5 185 121-357 13-226 (647)
133 TIGR03345 VI_ClpV1 type VI sec 99.6 1.7E-14 3.8E-19 169.1 19.1 198 425-647 183-408 (852)
134 PRK04195 replication factor C 99.6 1.2E-14 2.6E-19 161.9 16.0 189 424-647 9-205 (482)
135 PRK05342 clpX ATP-dependent pr 99.6 3.9E-14 8.5E-19 152.4 19.1 300 56-363 8-382 (412)
136 PRK10865 protein disaggregatio 99.6 1.8E-14 3.8E-19 169.6 17.6 168 426-616 175-360 (857)
137 PRK14961 DNA polymerase III su 99.6 4.8E-14 1E-18 151.3 19.3 190 121-356 13-225 (363)
138 PRK14958 DNA polymerase III su 99.6 2.6E-14 5.6E-19 158.4 17.3 184 121-356 13-225 (509)
139 PRK06645 DNA polymerase III su 99.6 2.5E-14 5.4E-19 157.3 16.9 186 424-646 16-234 (507)
140 PRK06645 DNA polymerase III su 99.6 5.9E-14 1.3E-18 154.4 19.5 193 120-358 17-236 (507)
141 PRK14964 DNA polymerase III su 99.6 4.4E-14 9.6E-19 154.0 18.3 185 121-357 10-223 (491)
142 KOG0989 Replication factor C, 99.6 2E-14 4.2E-19 142.2 13.7 186 120-355 32-234 (346)
143 TIGR02928 orc1/cdc6 family rep 99.6 8.6E-14 1.9E-18 150.5 20.0 220 429-681 15-275 (365)
144 PLN03025 replication factor C 99.6 1.4E-14 3.1E-19 153.0 13.4 182 424-646 8-202 (319)
145 PRK13342 recombination factor 99.6 4.5E-14 9.7E-19 154.3 17.5 180 121-356 9-201 (413)
146 PRK14963 DNA polymerase III su 99.6 2.1E-14 4.6E-19 158.7 14.8 204 424-680 9-240 (504)
147 PRK14959 DNA polymerase III su 99.6 1.8E-14 3.9E-19 160.0 14.0 183 424-646 11-222 (624)
148 PRK14949 DNA polymerase III su 99.6 1.4E-13 3E-18 156.4 21.3 179 425-643 12-219 (944)
149 PRK13341 recombination factor 99.6 3.7E-14 8E-19 162.3 16.8 227 425-701 24-268 (725)
150 PRK14964 DNA polymerase III su 99.6 2.2E-14 4.7E-19 156.5 13.8 185 425-646 9-222 (491)
151 PRK07940 DNA polymerase III su 99.6 6E-14 1.3E-18 150.4 16.9 191 122-352 3-215 (394)
152 PRK08691 DNA polymerase III su 99.6 5.5E-14 1.2E-18 156.8 17.1 193 120-358 12-227 (709)
153 PRK14958 DNA polymerase III su 99.6 3.1E-14 6.7E-19 157.8 14.7 184 425-645 12-224 (509)
154 CHL00095 clpC Clp protease ATP 99.6 3.6E-14 7.7E-19 167.4 16.0 163 426-611 176-355 (821)
155 KOG2028 ATPase related to the 99.6 4.7E-14 1E-18 141.6 14.3 151 120-322 134-294 (554)
156 TIGR03346 chaperone_ClpB ATP-d 99.6 5.7E-14 1.2E-18 166.1 17.2 200 425-647 169-394 (852)
157 PRK07994 DNA polymerase III su 99.6 2.3E-13 5E-18 152.7 21.0 167 425-625 12-207 (647)
158 PLN03025 replication factor C 99.6 8.8E-14 1.9E-18 147.0 16.8 180 120-352 9-201 (319)
159 PRK14957 DNA polymerase III su 99.5 6.1E-14 1.3E-18 155.1 15.9 181 425-645 12-221 (546)
160 PRK12402 replication factor C 99.5 7.9E-14 1.7E-18 149.1 16.4 209 424-680 10-249 (337)
161 PRK14951 DNA polymerase III su 99.5 7E-14 1.5E-18 156.6 16.1 179 425-643 12-224 (618)
162 PRK00411 cdc6 cell division co 99.5 2.5E-13 5.3E-18 148.5 19.7 222 429-682 30-284 (394)
163 PRK14951 DNA polymerase III su 99.5 1.6E-13 3.6E-18 153.6 18.4 191 121-357 13-231 (618)
164 PRK14957 DNA polymerase III su 99.5 1.8E-13 4E-18 151.3 18.6 185 121-357 13-226 (546)
165 PRK04195 replication factor C 99.5 1.8E-13 3.9E-18 152.5 18.4 186 120-355 10-203 (482)
166 PRK05563 DNA polymerase III su 99.5 1.9E-13 4.1E-18 153.6 18.6 167 425-625 12-207 (559)
167 TIGR00390 hslU ATP-dependent p 99.5 1E-13 2.2E-18 145.7 15.2 185 124-319 12-343 (441)
168 PRK07940 DNA polymerase III su 99.5 8.5E-14 1.9E-18 149.2 14.9 181 427-637 3-210 (394)
169 PRK14952 DNA polymerase III su 99.5 1.5E-13 3.3E-18 153.4 17.3 191 120-356 9-224 (584)
170 PF05673 DUF815: Protein of un 99.5 3.8E-13 8.3E-18 131.5 17.6 193 117-354 20-244 (249)
171 PRK07764 DNA polymerase III su 99.5 1.5E-13 3.3E-18 159.1 17.5 191 120-356 11-226 (824)
172 PRK08691 DNA polymerase III su 99.5 1.3E-13 2.7E-18 153.9 16.0 186 424-646 11-225 (709)
173 COG3829 RocR Transcriptional r 99.5 4.2E-15 9.2E-20 158.2 4.2 267 55-357 171-477 (560)
174 COG5271 MDN1 AAA ATPase contai 99.5 3.6E-13 7.8E-18 154.4 19.6 136 461-611 1541-1704(4600)
175 PRK07764 DNA polymerase III su 99.5 1.4E-13 3.1E-18 159.3 17.0 185 424-645 10-225 (824)
176 PTZ00112 origin recognition co 99.5 2.5E-13 5.4E-18 151.7 17.9 222 429-684 755-1010(1164)
177 PRK05563 DNA polymerase III su 99.5 2.8E-13 6.2E-18 152.2 18.7 186 120-357 12-226 (559)
178 PRK05896 DNA polymerase III su 99.5 8.3E-14 1.8E-18 154.0 14.1 168 424-625 11-207 (605)
179 PRK14952 DNA polymerase III su 99.5 2E-13 4.2E-18 152.6 16.8 167 425-625 9-206 (584)
180 PRK06305 DNA polymerase III su 99.5 1.5E-13 3.2E-18 150.7 15.4 182 425-646 13-224 (451)
181 PRK07133 DNA polymerase III su 99.5 1.5E-13 3.2E-18 154.9 15.5 187 424-644 13-219 (725)
182 PRK05896 DNA polymerase III su 99.5 2.5E-13 5.4E-18 150.2 17.1 184 120-355 12-224 (605)
183 PRK14963 DNA polymerase III su 99.5 3.5E-13 7.5E-18 149.1 18.1 184 120-355 10-221 (504)
184 TIGR02397 dnaX_nterm DNA polym 99.5 2E-13 4.4E-18 147.1 15.9 168 424-625 9-205 (355)
185 PRK14969 DNA polymerase III su 99.5 1.5E-13 3.3E-18 153.3 14.7 191 121-357 13-226 (527)
186 TIGR02903 spore_lon_C ATP-depe 99.5 3.6E-12 7.8E-17 145.0 25.8 224 424-681 149-431 (615)
187 PRK13341 recombination factor 99.5 3.2E-13 6.9E-18 154.7 17.2 181 120-356 24-222 (725)
188 PRK05201 hslU ATP-dependent pr 99.5 8E-14 1.7E-18 146.6 11.2 185 124-319 15-345 (443)
189 PRK07133 DNA polymerase III su 99.5 4.9E-13 1.1E-17 150.8 17.9 191 120-356 14-224 (725)
190 PRK14965 DNA polymerase III su 99.5 4.3E-13 9.3E-18 151.5 17.5 185 121-357 13-226 (576)
191 TIGR00382 clpX endopeptidase C 99.5 4.9E-13 1.1E-17 143.1 17.0 295 57-362 7-387 (413)
192 PRK14959 DNA polymerase III su 99.5 4.4E-13 9.4E-18 149.1 16.9 183 120-354 12-223 (624)
193 PRK14970 DNA polymerase III su 99.5 3.9E-13 8.4E-18 145.2 15.7 186 424-643 12-208 (367)
194 PRK14965 DNA polymerase III su 99.5 2.8E-13 6.1E-18 153.0 15.1 167 425-625 12-207 (576)
195 PRK00149 dnaA chromosomal repl 99.5 9.5E-13 2.1E-17 145.7 19.0 191 463-680 148-349 (450)
196 PRK14953 DNA polymerase III su 99.5 3E-13 6.5E-18 149.1 14.8 181 425-645 12-221 (486)
197 COG2812 DnaX DNA polymerase II 99.5 2.7E-13 5.9E-18 147.2 14.0 194 120-359 12-228 (515)
198 PRK12402 replication factor C 99.5 1.5E-12 3.2E-17 139.3 19.6 184 120-350 11-225 (337)
199 PHA02544 44 clamp loader, smal 99.5 4E-13 8.8E-18 142.2 14.6 159 422-610 14-173 (316)
200 PRK14969 DNA polymerase III su 99.5 1.1E-12 2.5E-17 146.3 18.3 185 425-646 12-225 (527)
201 PRK00149 dnaA chromosomal repl 99.5 1.1E-12 2.4E-17 145.2 17.8 199 118-357 116-328 (450)
202 PF05673 DUF815: Protein of un 99.5 2.3E-12 5E-17 126.0 17.6 196 421-644 19-244 (249)
203 PRK08451 DNA polymerase III su 99.5 1.1E-12 2.3E-17 144.5 17.0 186 121-358 11-225 (535)
204 PRK06647 DNA polymerase III su 99.5 9.6E-13 2.1E-17 147.3 16.9 191 120-356 12-225 (563)
205 PRK14953 DNA polymerase III su 99.5 1.9E-12 4E-17 142.9 18.9 191 120-356 12-225 (486)
206 PRK14948 DNA polymerase III su 99.5 9.6E-13 2.1E-17 149.0 17.0 181 424-644 11-222 (620)
207 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.1E-12 4.6E-17 129.8 17.6 186 120-357 11-207 (226)
208 TIGR00362 DnaA chromosomal rep 99.5 5.6E-13 1.2E-17 145.7 14.2 189 463-679 136-336 (405)
209 TIGR00362 DnaA chromosomal rep 99.5 2.2E-12 4.7E-17 141.1 18.5 201 118-359 104-318 (405)
210 PRK06647 DNA polymerase III su 99.5 7.9E-13 1.7E-17 148.0 15.2 167 425-625 12-207 (563)
211 PHA02544 44 clamp loader, smal 99.4 1.9E-12 4E-17 137.2 17.1 156 121-323 18-174 (316)
212 TIGR02397 dnaX_nterm DNA polym 99.4 2.5E-12 5.4E-17 138.6 18.2 183 121-355 11-222 (355)
213 TIGR02903 spore_lon_C ATP-depe 99.4 5.2E-12 1.1E-16 143.7 21.6 209 120-357 150-400 (615)
214 PRK09111 DNA polymerase III su 99.4 2.6E-12 5.5E-17 144.5 18.3 190 121-356 21-238 (598)
215 COG1474 CDC6 Cdc6-related prot 99.4 2.4E-12 5.3E-17 136.7 17.0 222 431-687 19-272 (366)
216 PRK06305 DNA polymerase III su 99.4 3.4E-12 7.5E-17 140.0 18.6 188 121-354 14-225 (451)
217 COG1219 ClpX ATP-dependent pro 99.4 4.5E-13 9.8E-18 132.8 10.3 200 61-264 1-212 (408)
218 TIGR02928 orc1/cdc6 family rep 99.4 7.2E-12 1.6E-16 135.5 20.5 203 121-359 12-254 (365)
219 PRK09111 DNA polymerase III su 99.4 2.1E-12 4.5E-17 145.2 16.8 190 425-645 20-237 (598)
220 PTZ00112 origin recognition co 99.4 4.2E-12 9.1E-17 142.1 18.3 166 123-325 754-952 (1164)
221 TIGR02640 gas_vesic_GvpN gas v 99.4 1.7E-12 3.6E-17 133.0 14.3 133 463-610 21-198 (262)
222 PRK08451 DNA polymerase III su 99.4 2.4E-12 5.3E-17 141.7 16.4 180 425-644 10-218 (535)
223 PRK14970 DNA polymerase III su 99.4 3.9E-12 8.5E-17 137.4 17.9 190 120-355 13-213 (367)
224 PRK12422 chromosomal replicati 99.4 3.3E-12 7.1E-17 139.5 17.3 192 463-680 141-343 (445)
225 PRK00440 rfc replication facto 99.4 1.8E-12 3.9E-17 137.6 14.6 204 424-681 12-227 (319)
226 PRK06893 DNA replication initi 99.4 6.9E-12 1.5E-16 125.8 17.7 190 118-354 10-206 (229)
227 PF00308 Bac_DnaA: Bacterial d 99.4 4.8E-12 1E-16 125.8 16.3 198 119-357 3-214 (219)
228 PRK14954 DNA polymerase III su 99.4 7E-12 1.5E-16 141.2 18.8 191 120-356 12-233 (620)
229 PRK14088 dnaA chromosomal repl 99.4 4E-12 8.6E-17 139.3 16.4 198 118-356 99-310 (440)
230 PRK14950 DNA polymerase III su 99.4 2.3E-12 5E-17 146.4 14.8 168 424-625 11-208 (585)
231 PRK14955 DNA polymerase III su 99.4 4E-12 8.7E-17 138.1 15.9 189 121-355 13-232 (397)
232 PRK14948 DNA polymerase III su 99.4 5.7E-12 1.2E-16 142.7 17.7 188 121-354 13-225 (620)
233 TIGR01650 PD_CobS cobaltochela 99.4 1.6E-12 3.5E-17 133.8 12.0 182 156-356 62-281 (327)
234 COG1224 TIP49 DNA helicase TIP 99.4 1.8E-11 3.8E-16 123.4 19.0 131 522-682 291-434 (450)
235 PRK00411 cdc6 cell division co 99.4 1.2E-11 2.6E-16 135.3 19.6 204 120-359 26-262 (394)
236 COG1219 ClpX ATP-dependent pro 99.4 3.7E-12 8.1E-17 126.3 13.7 222 429-652 61-370 (408)
237 PRK14955 DNA polymerase III su 99.4 2.7E-12 5.9E-17 139.4 14.1 181 424-644 11-228 (397)
238 PRK08084 DNA replication initi 99.4 2.1E-11 4.5E-16 122.9 19.4 185 118-354 16-212 (235)
239 TIGR02640 gas_vesic_GvpN gas v 99.4 4.6E-12 1E-16 129.8 15.0 148 157-322 20-198 (262)
240 PRK14954 DNA polymerase III su 99.4 1.9E-11 4E-16 137.8 20.5 185 425-644 12-228 (620)
241 PRK06893 DNA replication initi 99.4 8.1E-12 1.8E-16 125.3 15.8 181 464-678 40-228 (229)
242 PRK08903 DnaA regulatory inact 99.4 1.1E-11 2.3E-16 124.7 16.7 176 461-678 40-224 (227)
243 PRK14088 dnaA chromosomal repl 99.4 3.2E-12 6.9E-17 140.1 13.8 191 463-680 130-332 (440)
244 PRK08903 DnaA regulatory inact 99.4 1.7E-11 3.6E-16 123.3 17.6 181 118-355 12-203 (227)
245 PRK14971 DNA polymerase III su 99.4 7.9E-12 1.7E-16 141.6 16.9 181 425-645 13-223 (614)
246 COG2812 DnaX DNA polymerase II 99.4 3.8E-12 8.2E-17 138.4 13.5 193 425-648 12-227 (515)
247 PRK12422 chromosomal replicati 99.4 2E-11 4.3E-16 133.5 19.0 201 118-355 105-317 (445)
248 TIGR01650 PD_CobS cobaltochela 99.4 3.7E-12 8E-17 131.1 12.0 137 461-611 62-234 (327)
249 PF07724 AAA_2: AAA domain (Cd 99.4 2.7E-12 5.8E-17 122.0 10.0 113 462-576 2-131 (171)
250 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.6E-12 1.4E-16 126.2 13.3 180 461-677 36-225 (226)
251 COG1220 HslU ATP-dependent pro 99.4 3.1E-11 6.6E-16 120.8 17.2 152 522-680 250-433 (444)
252 PRK14086 dnaA chromosomal repl 99.3 1.7E-11 3.6E-16 135.9 17.0 189 464-680 315-515 (617)
253 PRK13407 bchI magnesium chelat 99.3 1.8E-12 4E-17 135.5 8.9 169 119-322 3-216 (334)
254 PRK14971 DNA polymerase III su 99.3 3.1E-11 6.7E-16 136.8 18.5 191 121-357 14-228 (614)
255 PRK05642 DNA replication initi 99.3 9.6E-11 2.1E-15 117.9 20.1 159 158-355 45-212 (234)
256 PRK14086 dnaA chromosomal repl 99.3 2.9E-11 6.4E-16 134.0 17.7 168 158-356 314-493 (617)
257 PF01078 Mg_chelatase: Magnesi 99.3 4E-13 8.7E-18 128.8 2.6 130 122-286 1-158 (206)
258 PRK14950 DNA polymerase III su 99.3 2.2E-11 4.8E-16 138.4 17.0 189 120-354 12-224 (585)
259 PRK00440 rfc replication facto 99.3 3.5E-11 7.6E-16 127.7 17.2 179 121-352 14-204 (319)
260 PRK13407 bchI magnesium chelat 99.3 9.2E-12 2E-16 130.3 11.7 160 425-610 4-216 (334)
261 COG5271 MDN1 AAA ATPase contai 99.3 5.8E-11 1.3E-15 136.9 18.7 147 158-325 1543-1706(4600)
262 COG3604 FhlA Transcriptional r 99.3 3.5E-12 7.6E-17 134.3 8.3 203 120-359 219-456 (550)
263 KOG1969 DNA replication checkp 99.3 8.1E-11 1.8E-15 128.6 18.1 168 461-654 324-520 (877)
264 COG1221 PspF Transcriptional r 99.3 8.1E-12 1.8E-16 131.6 10.2 202 120-359 74-309 (403)
265 PRK08084 DNA replication initi 99.3 3.9E-11 8.4E-16 120.9 14.7 180 463-678 45-234 (235)
266 cd00009 AAA The AAA+ (ATPases 99.3 3E-11 6.5E-16 112.0 12.7 122 462-596 18-151 (151)
267 COG2204 AtoC Response regulato 99.3 3E-12 6.4E-17 137.3 6.6 200 122-359 139-374 (464)
268 PRK14087 dnaA chromosomal repl 99.3 4.9E-11 1.1E-15 130.9 16.3 191 463-680 141-348 (450)
269 cd00009 AAA The AAA+ (ATPases 99.3 4.6E-11 1E-15 110.7 13.9 141 128-307 2-150 (151)
270 PRK08727 hypothetical protein; 99.3 1.6E-10 3.5E-15 116.2 18.7 183 118-353 13-206 (233)
271 PRK08727 hypothetical protein; 99.3 3.9E-11 8.5E-16 120.6 13.7 177 464-680 42-231 (233)
272 COG1224 TIP49 DNA helicase TIP 99.3 2E-10 4.2E-15 116.0 18.3 111 218-362 292-415 (450)
273 KOG0991 Replication factor C, 99.3 1.3E-11 2.7E-16 117.3 9.2 185 424-646 22-216 (333)
274 COG2607 Predicted ATPase (AAA+ 99.3 1.9E-10 4.1E-15 110.3 16.9 195 117-354 53-276 (287)
275 CHL00081 chlI Mg-protoporyphyr 99.3 1.2E-11 2.7E-16 129.5 9.6 169 118-321 11-231 (350)
276 PHA02244 ATPase-like protein 99.3 1.3E-10 2.7E-15 121.0 16.8 125 462-602 118-266 (383)
277 PRK09112 DNA polymerase III su 99.3 2.2E-10 4.8E-15 121.4 19.1 187 122-355 21-244 (351)
278 PRK05642 DNA replication initi 99.3 8.2E-11 1.8E-15 118.4 14.9 180 463-678 45-233 (234)
279 KOG0745 Putative ATP-dependent 99.3 1.1E-10 2.4E-15 120.3 15.9 188 463-652 226-511 (564)
280 PF07728 AAA_5: AAA domain (dy 99.3 6.8E-12 1.5E-16 115.9 6.1 127 160-300 1-139 (139)
281 PHA02244 ATPase-like protein 99.2 1E-10 2.2E-15 121.7 15.0 137 157-318 118-269 (383)
282 COG1474 CDC6 Cdc6-related prot 99.2 3.3E-10 7.1E-15 120.5 18.8 200 123-361 16-247 (366)
283 COG0542 clpA ATP-binding subun 99.2 9.4E-11 2E-15 132.3 15.2 173 425-619 166-355 (786)
284 PRK06620 hypothetical protein; 99.2 1.7E-10 3.6E-15 114.1 15.3 175 117-354 9-192 (214)
285 TIGR00678 holB DNA polymerase 99.2 5.5E-11 1.2E-15 115.8 11.6 128 461-609 12-167 (188)
286 PRK04132 replication factor C 99.2 1E-10 2.2E-15 134.8 14.9 155 465-647 566-734 (846)
287 PRK05564 DNA polymerase III su 99.2 2.9E-10 6.2E-15 120.0 16.3 172 122-345 2-185 (313)
288 COG2607 Predicted ATPase (AAA+ 99.2 8.5E-10 1.9E-14 105.9 17.8 198 420-645 51-277 (287)
289 PRK09112 DNA polymerase III su 99.2 1.9E-10 4.2E-15 121.8 14.9 158 425-610 19-213 (351)
290 KOG0991 Replication factor C, 99.2 7.1E-11 1.5E-15 112.3 10.2 174 120-342 23-206 (333)
291 PRK11331 5-methylcytosine-spec 99.2 1.4E-10 3.1E-15 123.8 13.6 158 123-308 174-357 (459)
292 COG1220 HslU ATP-dependent pro 99.2 1.2E-10 2.6E-15 116.6 12.0 185 124-319 15-346 (444)
293 PRK06620 hypothetical protein; 99.2 2.9E-10 6.3E-15 112.4 14.9 164 464-677 45-213 (214)
294 PF00308 Bac_DnaA: Bacterial d 99.2 1.6E-10 3.4E-15 114.9 12.9 168 463-646 34-213 (219)
295 COG0470 HolB ATPase involved i 99.2 2.2E-10 4.8E-15 121.8 14.9 154 463-650 24-205 (325)
296 PRK14087 dnaA chromosomal repl 99.2 4.6E-10 1E-14 123.2 17.7 168 158-356 141-324 (450)
297 PF07724 AAA_2: AAA domain (Cd 99.2 1E-10 2.3E-15 111.2 10.7 122 157-288 2-131 (171)
298 PRK15424 propionate catabolism 99.2 8.2E-11 1.8E-15 130.6 10.8 200 121-357 216-463 (538)
299 TIGR02030 BchI-ChlI magnesium 99.2 7.9E-11 1.7E-15 123.6 10.1 165 122-321 2-218 (337)
300 PRK07471 DNA polymerase III su 99.2 6.3E-10 1.4E-14 118.6 17.0 183 121-352 16-239 (365)
301 COG0714 MoxR-like ATPases [Gen 99.2 6.2E-11 1.3E-15 125.9 9.4 158 125-321 25-202 (329)
302 PF07728 AAA_5: AAA domain (dy 99.2 6.6E-11 1.4E-15 109.3 8.3 110 465-588 1-139 (139)
303 TIGR02030 BchI-ChlI magnesium 99.2 2.5E-10 5.4E-15 119.9 13.4 153 428-609 3-218 (337)
304 COG1221 PspF Transcriptional r 99.2 1.1E-10 2.4E-15 123.1 10.6 201 425-652 74-312 (403)
305 PRK11331 5-methylcytosine-spec 99.2 1.9E-10 4.1E-15 122.9 12.5 126 462-600 193-362 (459)
306 TIGR02329 propionate_PrpR prop 99.2 9.4E-11 2E-15 130.4 10.3 201 121-358 209-449 (526)
307 PRK05564 DNA polymerase III su 99.2 4.7E-10 1E-14 118.3 15.1 152 427-610 2-165 (313)
308 smart00382 AAA ATPases associa 99.2 2.7E-10 5.9E-15 104.6 11.5 122 463-597 2-147 (148)
309 KOG1969 DNA replication checkp 99.2 7.6E-10 1.6E-14 121.1 16.4 214 120-360 267-516 (877)
310 PF06068 TIP49: TIP49 C-termin 99.1 8.1E-10 1.8E-14 113.7 15.6 68 120-195 20-89 (398)
311 PRK07399 DNA polymerase III su 99.1 5E-10 1.1E-14 117.1 14.0 183 122-353 2-223 (314)
312 TIGR02442 Cob-chelat-sub cobal 99.1 2.8E-10 6.1E-15 130.5 13.0 153 428-609 3-213 (633)
313 CHL00081 chlI Mg-protoporyphyr 99.1 7E-10 1.5E-14 116.4 14.8 160 425-610 13-232 (350)
314 COG0714 MoxR-like ATPases [Gen 99.1 2.5E-10 5.4E-15 121.2 11.5 132 462-610 42-203 (329)
315 TIGR02974 phageshock_pspF psp 99.1 1E-10 2.2E-15 123.4 8.4 198 126-359 1-233 (329)
316 PF06068 TIP49: TIP49 C-termin 99.1 9E-10 2E-14 113.4 14.6 78 522-616 278-367 (398)
317 PF00158 Sigma54_activat: Sigm 99.1 9.5E-11 2.1E-15 111.1 6.9 128 126-286 1-143 (168)
318 KOG0745 Putative ATP-dependent 99.1 1.5E-09 3.3E-14 112.1 16.1 102 158-259 226-336 (564)
319 TIGR00368 Mg chelatase-related 99.1 4.7E-10 1E-14 123.9 13.3 155 121-312 189-394 (499)
320 PRK09087 hypothetical protein; 99.1 1.2E-09 2.5E-14 109.1 14.7 163 118-341 15-186 (226)
321 PF07726 AAA_3: ATPase family 99.1 1.4E-11 3E-16 108.3 0.7 113 160-300 1-129 (131)
322 TIGR00602 rad24 checkpoint pro 99.1 6.7E-10 1.5E-14 125.1 14.2 231 422-682 77-357 (637)
323 COG0593 DnaA ATPase involved i 99.1 2.8E-09 6E-14 113.0 17.9 171 157-358 112-293 (408)
324 PRK07399 DNA polymerase III su 99.1 9.8E-10 2.1E-14 114.9 14.4 156 427-611 2-196 (314)
325 COG0606 Predicted ATPase with 99.1 3.5E-11 7.7E-16 127.0 3.4 128 120-286 175-335 (490)
326 COG0593 DnaA ATPase involved i 99.1 2.9E-09 6.2E-14 112.9 17.5 193 462-682 112-315 (408)
327 PRK07471 DNA polymerase III su 99.1 8.2E-10 1.8E-14 117.7 13.4 158 425-610 15-213 (365)
328 COG3829 RocR Transcriptional r 99.1 3.6E-10 7.9E-15 121.0 10.6 194 425-647 241-477 (560)
329 smart00382 AAA ATPases associa 99.1 7.9E-10 1.7E-14 101.5 11.7 128 158-309 2-147 (148)
330 TIGR02442 Cob-chelat-sub cobal 99.1 2.9E-10 6.3E-15 130.4 10.4 165 122-321 2-213 (633)
331 PF01078 Mg_chelatase: Magnesi 99.1 2.9E-11 6.2E-16 116.1 1.8 142 428-600 2-205 (206)
332 TIGR00764 lon_rel lon-related 99.1 5E-10 1.1E-14 127.1 12.0 137 522-682 217-393 (608)
333 TIGR02974 phageshock_pspF psp 99.1 7E-10 1.5E-14 117.1 11.5 173 461-649 20-233 (329)
334 PRK13531 regulatory ATPase Rav 99.1 6.2E-10 1.3E-14 120.0 11.1 161 124-321 20-193 (498)
335 COG2204 AtoC Response regulato 99.1 7.9E-10 1.7E-14 118.8 11.8 196 427-651 139-376 (464)
336 PRK11608 pspF phage shock prot 99.1 4.6E-10 9.9E-15 118.6 9.9 200 122-358 4-239 (326)
337 TIGR00678 holB DNA polymerase 99.1 1.4E-09 3.1E-14 105.8 12.7 132 157-321 13-167 (188)
338 PRK10820 DNA-binding transcrip 99.1 6.1E-10 1.3E-14 125.0 11.1 204 118-358 198-436 (520)
339 COG0470 HolB ATPase involved i 99.1 1.9E-09 4E-14 114.7 14.2 150 124-319 1-178 (325)
340 PRK05022 anaerobic nitric oxid 99.1 6.2E-10 1.3E-14 125.0 10.8 202 122-359 185-420 (509)
341 PRK05707 DNA polymerase III su 99.0 1.5E-09 3.3E-14 114.1 12.8 130 461-609 20-177 (328)
342 PRK15429 formate hydrogenlyase 99.0 1.9E-09 4E-14 125.8 14.8 202 120-359 372-609 (686)
343 PRK08058 DNA polymerase III su 99.0 1.8E-09 3.9E-14 114.3 13.0 154 122-320 3-180 (329)
344 PRK05707 DNA polymerase III su 99.0 2.9E-09 6.3E-14 111.9 14.3 150 157-345 21-198 (328)
345 TIGR00368 Mg chelatase-related 99.0 2.5E-09 5.4E-14 118.2 13.9 143 427-600 190-394 (499)
346 KOG1514 Origin recognition com 99.0 5.7E-09 1.2E-13 114.3 16.3 206 465-686 424-661 (767)
347 TIGR03015 pepcterm_ATPase puta 99.0 1E-08 2.2E-13 106.0 17.7 188 465-681 45-267 (269)
348 TIGR01817 nifA Nif-specific re 99.0 9.6E-10 2.1E-14 124.6 10.7 204 120-359 192-428 (534)
349 PRK11608 pspF phage shock prot 99.0 2E-09 4.4E-14 113.7 12.3 193 428-648 5-239 (326)
350 PRK11388 DNA-binding transcrip 99.0 1E-09 2.2E-14 127.3 10.9 202 120-357 321-552 (638)
351 COG1239 ChlI Mg-chelatase subu 99.0 2E-09 4.4E-14 112.4 11.9 169 120-323 13-233 (423)
352 PRK08058 DNA polymerase III su 99.0 1.5E-09 3.2E-14 114.9 11.0 149 427-608 3-180 (329)
353 TIGR01817 nifA Nif-specific re 99.0 3.3E-09 7.2E-14 120.2 14.4 196 426-648 193-427 (534)
354 smart00763 AAA_PrkA PrkA AAA d 99.0 8.2E-09 1.8E-13 107.7 16.0 64 120-191 46-118 (361)
355 PRK04132 replication factor C 99.0 3.3E-09 7.2E-14 122.5 14.4 157 157-353 563-733 (846)
356 TIGR02329 propionate_PrpR prop 99.0 2.1E-09 4.6E-14 119.7 12.2 196 426-648 209-449 (526)
357 PRK09087 hypothetical protein; 99.0 1.4E-08 3.1E-13 101.3 16.9 170 463-680 44-222 (226)
358 COG3604 FhlA Transcriptional r 99.0 1.7E-09 3.7E-14 114.3 10.7 197 425-649 219-456 (550)
359 PRK15424 propionate catabolism 99.0 1.8E-09 3.9E-14 120.0 11.0 192 427-648 217-464 (538)
360 PRK13531 regulatory ATPase Rav 99.0 1.7E-09 3.8E-14 116.5 10.3 133 461-609 37-193 (498)
361 PRK11388 DNA-binding transcrip 99.0 1.5E-09 3.3E-14 125.7 10.4 195 426-648 322-553 (638)
362 TIGR00602 rad24 checkpoint pro 99.0 1.3E-08 2.7E-13 114.9 17.2 197 120-357 80-326 (637)
363 PRK05022 anaerobic nitric oxid 99.0 8.4E-09 1.8E-13 115.9 15.0 197 428-651 186-422 (509)
364 PF13177 DNA_pol3_delta2: DNA 99.0 3.9E-09 8.5E-14 99.8 10.3 118 461-597 17-161 (162)
365 smart00350 MCM minichromosome 98.9 1.6E-09 3.6E-14 121.3 8.8 178 123-324 202-402 (509)
366 COG0488 Uup ATPase components 98.9 1.2E-08 2.7E-13 113.1 15.3 30 153-182 24-53 (530)
367 PF05621 TniB: Bacterial TniB 98.9 1.1E-08 2.4E-13 103.7 13.2 214 432-675 37-284 (302)
368 PRK06964 DNA polymerase III su 98.9 8E-09 1.7E-13 108.6 12.6 132 461-608 19-202 (342)
369 TIGR02031 BchD-ChlD magnesium 98.9 9.7E-09 2.1E-13 116.6 14.2 133 463-610 16-174 (589)
370 KOG1942 DNA helicase, TBP-inte 98.9 1.9E-08 4.2E-13 98.9 14.2 131 521-681 295-439 (456)
371 smart00350 MCM minichromosome 98.9 5.5E-09 1.2E-13 117.1 11.1 165 430-611 204-401 (509)
372 PRK10820 DNA-binding transcrip 98.9 1.3E-08 2.9E-13 114.3 14.0 196 425-648 200-436 (520)
373 KOG0990 Replication factor C, 98.9 1.1E-08 2.5E-13 102.3 11.7 192 421-650 33-238 (360)
374 PF13177 DNA_pol3_delta2: DNA 98.9 1.1E-08 2.3E-13 96.8 11.1 134 128-309 1-161 (162)
375 PF00158 Sigma54_activat: Sigm 98.9 1.7E-08 3.6E-13 95.8 12.2 100 461-574 20-143 (168)
376 KOG2035 Replication factor C, 98.9 2.6E-08 5.6E-13 97.6 13.4 153 464-643 35-227 (351)
377 PRK15429 formate hydrogenlyase 98.9 3.4E-08 7.4E-13 115.3 17.1 195 426-649 373-609 (686)
378 PF07726 AAA_3: ATPase family 98.9 8.1E-10 1.8E-14 97.3 2.7 108 465-588 1-129 (131)
379 PRK06871 DNA polymerase III su 98.9 1.9E-08 4.1E-13 105.0 13.0 129 461-609 22-178 (325)
380 PRK09862 putative ATP-dependen 98.9 5.5E-09 1.2E-13 114.9 9.2 154 122-312 189-391 (506)
381 PF12775 AAA_7: P-loop contain 98.9 3.7E-09 8E-14 108.3 7.2 148 156-324 31-195 (272)
382 PRK06964 DNA polymerase III su 98.8 2.1E-08 4.5E-13 105.4 12.3 133 156-321 19-203 (342)
383 COG5245 DYN1 Dynein, heavy cha 98.8 3.9E-09 8.4E-14 121.8 7.1 183 154-357 1490-1714(3164)
384 TIGR00764 lon_rel lon-related 98.8 5.7E-08 1.2E-12 110.5 16.6 50 121-185 15-64 (608)
385 PRK06871 DNA polymerase III su 98.8 3.8E-08 8.1E-13 102.8 13.6 145 128-321 6-178 (325)
386 KOG2680 DNA helicase TIP49, TB 98.8 2.5E-07 5.4E-12 91.6 17.8 131 522-682 288-431 (454)
387 KOG2035 Replication factor C, 98.8 1.8E-07 4E-12 91.7 16.8 170 122-342 11-220 (351)
388 KOG1942 DNA helicase, TBP-inte 98.8 1.2E-07 2.6E-12 93.4 15.5 54 122-183 36-89 (456)
389 PRK07993 DNA polymerase III su 98.8 3.7E-08 7.9E-13 103.9 12.0 128 461-607 22-177 (334)
390 PRK13765 ATP-dependent proteas 98.8 3.1E-08 6.8E-13 112.1 12.1 146 522-692 226-411 (637)
391 smart00763 AAA_PrkA PrkA AAA d 98.8 9E-08 1.9E-12 100.0 14.5 164 428-613 49-330 (361)
392 TIGR02031 BchD-ChlD magnesium 98.8 8.8E-09 1.9E-13 116.9 7.6 142 159-322 17-174 (589)
393 PRK08769 DNA polymerase III su 98.8 8.2E-08 1.8E-12 100.1 14.0 132 461-608 24-183 (319)
394 PRK06090 DNA polymerase III su 98.8 6.3E-08 1.4E-12 100.8 13.0 129 461-608 23-178 (319)
395 PRK09862 putative ATP-dependen 98.8 2.7E-08 5.9E-13 109.5 10.5 124 461-600 208-391 (506)
396 PTZ00111 DNA replication licen 98.8 2.3E-08 5E-13 114.9 9.9 178 124-324 450-659 (915)
397 PRK07993 DNA polymerase III su 98.8 9E-08 1.9E-12 101.0 13.4 150 156-345 22-199 (334)
398 PRK08769 DNA polymerase III su 98.7 1.6E-07 3.6E-12 97.9 15.0 170 128-347 8-205 (319)
399 PRK08699 DNA polymerase III su 98.7 9.5E-08 2.1E-12 100.4 12.8 132 461-608 19-183 (325)
400 PRK06090 DNA polymerase III su 98.7 1.5E-07 3.3E-12 98.0 13.7 143 128-320 7-178 (319)
401 PRK08116 hypothetical protein; 98.7 3.4E-08 7.4E-13 101.2 8.7 124 463-600 114-252 (268)
402 TIGR02915 PEP_resp_reg putativ 98.7 2.4E-08 5.2E-13 111.0 8.1 201 122-358 137-371 (445)
403 TIGR03015 pepcterm_ATPase puta 98.7 7.5E-07 1.6E-11 92.0 18.6 173 159-361 44-248 (269)
404 COG1239 ChlI Mg-chelatase subu 98.7 3.9E-07 8.4E-12 95.6 14.7 160 426-612 14-234 (423)
405 PF03215 Rad17: Rad17 cell cyc 98.7 4.6E-07 1E-11 100.6 16.1 174 462-650 44-269 (519)
406 PRK10923 glnG nitrogen regulat 98.7 4.1E-08 8.8E-13 110.0 8.0 202 122-359 136-371 (469)
407 PF05621 TniB: Bacterial TniB 98.7 1E-06 2.2E-11 89.5 16.9 202 126-361 36-271 (302)
408 COG0606 Predicted ATPase with 98.6 5.1E-09 1.1E-13 110.9 0.2 148 426-602 176-384 (490)
409 KOG2227 Pre-initiation complex 98.6 1.8E-06 4E-11 90.9 18.8 230 431-682 152-417 (529)
410 KOG0990 Replication factor C, 98.6 1.5E-07 3.3E-12 94.4 10.3 163 117-328 34-209 (360)
411 TIGR01818 ntrC nitrogen regula 98.6 8.5E-08 1.8E-12 107.3 9.1 175 462-649 156-367 (463)
412 TIGR02655 circ_KaiC circadian 98.6 9.7E-07 2.1E-11 98.5 17.4 77 459-535 259-366 (484)
413 PF13173 AAA_14: AAA domain 98.6 3.4E-07 7.4E-12 83.1 11.3 70 159-230 3-74 (128)
414 TIGR02915 PEP_resp_reg putativ 98.6 1.9E-07 4.1E-12 103.9 11.5 170 462-648 161-371 (445)
415 PF14532 Sigma54_activ_2: Sigm 98.6 7E-09 1.5E-13 95.5 -0.0 81 128-233 2-85 (138)
416 KOG2227 Pre-initiation complex 98.6 1.6E-06 3.5E-11 91.3 16.9 200 124-359 150-379 (529)
417 PRK10923 glnG nitrogen regulat 98.6 2.9E-07 6.4E-12 103.1 12.3 169 461-648 159-370 (469)
418 KOG1514 Origin recognition com 98.6 1.6E-06 3.4E-11 95.5 17.1 202 125-363 397-632 (767)
419 PRK08699 DNA polymerase III su 98.6 1.8E-07 4E-12 98.3 9.3 131 156-320 19-183 (325)
420 PRK08116 hypothetical protein; 98.6 2.9E-07 6.2E-12 94.4 10.3 123 158-311 114-251 (268)
421 KOG2680 DNA helicase TIP49, TB 98.6 2.4E-06 5.3E-11 84.7 16.0 73 287-362 339-412 (454)
422 COG3283 TyrR Transcriptional r 98.5 2.3E-07 5E-12 94.0 8.7 164 119-316 199-377 (511)
423 COG3283 TyrR Transcriptional r 98.5 3.9E-07 8.4E-12 92.4 10.3 166 463-648 227-431 (511)
424 PRK11361 acetoacetate metaboli 98.5 1.7E-07 3.8E-12 104.6 8.8 200 122-358 141-375 (457)
425 PRK07952 DNA replication prote 98.5 6.6E-07 1.4E-11 89.9 11.7 70 159-230 100-175 (244)
426 PF13401 AAA_22: AAA domain; P 98.5 5.7E-07 1.2E-11 81.8 10.3 86 463-558 4-113 (131)
427 PRK08181 transposase; Validate 98.5 2E-07 4.2E-12 95.1 7.8 101 462-575 105-209 (269)
428 PRK10636 putative ABC transpor 98.5 1E-06 2.2E-11 101.9 14.7 30 153-182 22-51 (638)
429 PRK09302 circadian clock prote 98.5 3.6E-06 7.7E-11 95.1 18.6 78 459-536 269-377 (509)
430 PF14532 Sigma54_activ_2: Sigm 98.5 2.2E-07 4.7E-12 85.6 7.2 108 461-596 19-137 (138)
431 KOG1051 Chaperone HSP104 and r 98.5 7.3E-07 1.6E-11 102.7 12.9 137 124-287 562-711 (898)
432 KOG0927 Predicted transporter 98.5 2.5E-06 5.5E-11 91.4 16.0 30 153-182 96-125 (614)
433 PRK08181 transposase; Validate 98.5 4.8E-07 1E-11 92.2 9.7 73 157-231 105-181 (269)
434 PRK11361 acetoacetate metaboli 98.5 4.5E-07 9.7E-12 101.3 10.3 170 462-648 165-375 (457)
435 PRK12377 putative replication 98.5 7.5E-07 1.6E-11 89.7 10.7 96 121-229 71-175 (248)
436 PRK06526 transposase; Provisio 98.5 2.1E-07 4.6E-12 94.4 6.5 101 462-575 97-201 (254)
437 PRK15115 response regulator Gl 98.5 2.3E-07 5.1E-12 103.1 7.2 198 125-358 135-366 (444)
438 PTZ00111 DNA replication licen 98.5 3.3E-07 7.2E-12 105.6 8.4 164 429-609 450-656 (915)
439 PRK13765 ATP-dependent proteas 98.5 1.3E-06 2.7E-11 99.2 12.9 51 118-183 25-75 (637)
440 PF01637 Arch_ATPase: Archaeal 98.5 1.6E-06 3.4E-11 87.1 12.4 179 126-344 1-228 (234)
441 PRK12377 putative replication 98.5 4.9E-07 1.1E-11 91.0 8.5 101 463-575 101-206 (248)
442 COG1484 DnaC DNA replication p 98.5 3.5E-07 7.7E-12 92.8 7.5 69 462-535 104-180 (254)
443 PRK07952 DNA replication prote 98.4 6E-07 1.3E-11 90.2 8.9 100 464-575 100-205 (244)
444 KOG1970 Checkpoint RAD17-RFC c 98.4 3.8E-06 8.2E-11 90.1 15.0 169 465-649 112-320 (634)
445 PRK09183 transposase/IS protei 98.4 3.2E-07 7E-12 93.6 6.8 74 461-535 100-177 (259)
446 COG1116 TauB ABC-type nitrate/ 98.4 1.2E-06 2.6E-11 86.1 10.3 85 501-599 125-222 (248)
447 COG3284 AcoR Transcriptional a 98.4 3.3E-07 7.2E-12 100.4 6.8 194 127-359 316-540 (606)
448 PRK11147 ABC transporter ATPas 98.4 3E-06 6.5E-11 98.2 15.1 30 153-182 24-53 (635)
449 PF13173 AAA_14: AAA domain 98.4 1.1E-06 2.4E-11 79.8 9.1 120 464-601 3-126 (128)
450 COG1123 ATPase components of v 98.4 2.5E-07 5.5E-12 101.0 5.5 34 153-186 30-63 (539)
451 PRK15115 response regulator Gl 98.4 1.5E-06 3.3E-11 96.6 11.8 166 463-648 157-366 (444)
452 PRK06835 DNA replication prote 98.4 8.7E-07 1.9E-11 93.1 9.0 71 463-535 183-259 (329)
453 PRK15064 ABC transporter ATP-b 98.4 3.2E-06 6.9E-11 96.1 14.2 340 152-594 21-508 (530)
454 PF01695 IstB_IS21: IstB-like 98.4 6.6E-07 1.4E-11 85.9 7.2 70 156-227 45-118 (178)
455 PRK06526 transposase; Provisio 98.4 5.4E-07 1.2E-11 91.4 6.7 73 157-231 97-173 (254)
456 PRK06835 DNA replication prote 98.4 1.8E-06 4E-11 90.7 10.2 71 158-230 183-259 (329)
457 PRK08939 primosomal protein Dn 98.4 6.2E-07 1.3E-11 93.5 6.6 102 462-575 155-261 (306)
458 PF01695 IstB_IS21: IstB-like 98.4 4.6E-07 1E-11 86.9 5.2 73 461-535 45-121 (178)
459 PRK05917 DNA polymerase III su 98.4 2.6E-06 5.6E-11 87.1 10.9 119 461-598 17-155 (290)
460 PRK09183 transposase/IS protei 98.3 1.3E-06 2.9E-11 89.1 8.7 76 155-231 99-178 (259)
461 KOG3595 Dyneins, heavy chain [ 98.3 1.1E-05 2.4E-10 100.5 18.0 340 159-530 128-531 (1395)
462 PRK06921 hypothetical protein; 98.3 4.7E-06 1E-10 85.3 12.3 69 462-533 116-188 (266)
463 PF13401 AAA_22: AAA domain; P 98.3 4.2E-06 9E-11 76.1 10.7 74 157-230 3-100 (131)
464 TIGR01818 ntrC nitrogen regula 98.3 1.4E-06 3E-11 97.6 9.0 200 123-359 133-367 (463)
465 COG1484 DnaC DNA replication p 98.3 2E-06 4.3E-11 87.4 9.2 73 157-230 104-180 (254)
466 PF12774 AAA_6: Hydrolytic ATP 98.3 9.3E-06 2E-10 81.0 13.7 142 157-318 31-176 (231)
467 PRK08939 primosomal protein Dn 98.3 3.2E-06 7E-11 88.2 10.6 70 157-228 155-228 (306)
468 PF03215 Rad17: Rad17 cell cyc 98.3 1.6E-05 3.6E-10 88.4 16.8 61 120-188 15-75 (519)
469 PRK13406 bchD magnesium chelat 98.3 2.7E-06 5.8E-11 95.9 10.3 189 464-680 26-250 (584)
470 PRK10365 transcriptional regul 98.3 2.3E-06 5E-11 95.1 9.3 167 462-648 161-371 (441)
471 PRK05917 DNA polymerase III su 98.3 3.5E-06 7.6E-11 86.1 9.5 121 156-309 17-154 (290)
472 PLN03073 ABC transporter F fam 98.2 3.2E-05 6.9E-10 90.1 18.2 341 152-594 197-697 (718)
473 PRK06921 hypothetical protein; 98.2 4.6E-06 9.9E-11 85.4 9.9 69 157-228 116-188 (266)
474 PF00493 MCM: MCM2/3/5 family 98.2 4.1E-07 8.9E-12 96.3 2.2 176 124-325 24-224 (331)
475 PRK05818 DNA polymerase III su 98.2 8.9E-06 1.9E-10 81.4 11.4 121 461-597 5-147 (261)
476 PF01637 Arch_ATPase: Archaeal 98.2 1.7E-06 3.6E-11 87.0 6.2 143 462-613 19-207 (234)
477 KOG1808 AAA ATPase containing 98.2 1.3E-05 2.7E-10 98.3 14.3 143 159-322 441-599 (1856)
478 cd01120 RecA-like_NTPases RecA 98.2 1.3E-05 2.9E-10 75.4 11.8 108 466-577 2-139 (165)
479 PF05729 NACHT: NACHT domain 98.2 2.4E-05 5.2E-10 74.0 13.2 140 160-324 2-165 (166)
480 PRK07276 DNA polymerase III su 98.2 1.3E-05 2.8E-10 82.3 11.5 128 461-607 22-172 (290)
481 PRK10365 transcriptional regul 98.2 3.9E-06 8.3E-11 93.3 7.8 197 125-357 140-370 (441)
482 PRK07132 DNA polymerase III su 98.2 2E-05 4.2E-10 81.7 12.4 127 461-608 16-160 (299)
483 PF00910 RNA_helicase: RNA hel 98.2 6.4E-06 1.4E-10 72.1 7.5 23 466-488 1-23 (107)
484 PF12774 AAA_6: Hydrolytic ATP 98.2 2.3E-05 4.9E-10 78.2 12.4 67 462-535 31-97 (231)
485 PF05729 NACHT: NACHT domain 98.1 2.8E-05 6E-10 73.6 12.5 141 466-612 3-165 (166)
486 KOG0478 DNA replication licens 98.1 6.1E-06 1.3E-10 90.5 8.7 175 124-322 429-626 (804)
487 PRK06851 hypothetical protein; 98.1 8.1E-05 1.8E-09 78.9 16.7 36 463-498 214-252 (367)
488 PRK05818 DNA polymerase III su 98.1 1.9E-05 4E-10 79.1 11.2 121 156-309 5-147 (261)
489 KOG1968 Replication factor C, 98.1 3.4E-06 7.4E-11 98.1 6.9 196 466-681 360-571 (871)
490 PF12775 AAA_7: P-loop contain 98.1 4E-06 8.7E-11 86.1 6.7 140 462-612 32-195 (272)
491 PRK13406 bchD magnesium chelat 98.1 3.4E-06 7.4E-11 95.1 6.1 133 159-313 26-173 (584)
492 COG1241 MCM2 Predicted ATPase 98.1 7.3E-06 1.6E-10 92.5 8.6 154 428-600 285-473 (682)
493 KOG1970 Checkpoint RAD17-RFC c 98.1 7.9E-05 1.7E-09 80.3 15.8 61 122-189 80-141 (634)
494 PRK07276 DNA polymerase III su 98.1 9.5E-05 2.1E-09 76.0 15.8 128 156-319 22-172 (290)
495 COG4650 RtcR Sigma54-dependent 98.1 2.8E-06 6E-11 84.0 4.4 137 154-316 204-366 (531)
496 KOG2170 ATPase of the AAA+ sup 98.1 3E-05 6.5E-10 77.6 11.5 123 431-573 84-223 (344)
497 PF00931 NB-ARC: NB-ARC domain 98.0 8.4E-05 1.8E-09 77.5 14.9 169 130-345 2-197 (287)
498 cd01120 RecA-like_NTPases RecA 98.0 7E-05 1.5E-09 70.5 13.0 72 161-232 2-100 (165)
499 PF00910 RNA_helicase: RNA hel 98.0 1.8E-05 3.9E-10 69.3 7.3 23 161-183 1-23 (107)
500 COG1126 GlnQ ABC-type polar am 98.0 2.8E-05 6.2E-10 74.4 9.0 62 503-575 133-196 (240)
No 1
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-111 Score=877.26 Aligned_cols=568 Identities=54% Similarity=0.894 Sum_probs=520.3
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
..++|.+|+|++....+|.+.+.. +.+|+.|..+|+.|++|||||||||||||+||++||++++.||+.|++.++++++
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 366899999999999999988866 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeE
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYV 278 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v 278 (702)
.|+++++++++|++|....|||+||||||.+.++++..+.++++|++.+|+++||++...-. ....|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~-------------~g~~V 330 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT-------------KGDPV 330 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc-------------CCCCe
Confidence 99999999999999999999999999999999999999999999999999999998764111 12339
Q ss_pred EEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 279 LVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 279 ~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
+||||||+|+.|||+|+|+|||++.|.+..|+..+|.+||+.+++++.+...+++..+|..|+||+|+||.+||.+|+..
T Consensus 331 lVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 331 LVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred EEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCccccc-------cCcc-----------------------cccCCCChhhhhhhcccHhHHHHHH
Q 045279 359 AMKRIIDQRKSELSGNSIAEQ-------HSDD-----------------------WWRQPWLPEEMERLTITMTDFEEAT 408 (702)
Q Consensus 359 a~~r~~~~~~~~~~~~~~~~~-------~~~~-----------------------~~~~~~~~~~~~~~~i~~~d~~~~l 408 (702)
|++|+++............+. .... .+..+...+..+.+.|+.+||..|+
T Consensus 411 AikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al 490 (802)
T KOG0733|consen 411 AIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEAL 490 (802)
T ss_pred HHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHH
Confidence 999999865521111000000 0000 1222344466677889999999999
Q ss_pred hccCCCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC
Q 045279 409 KMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 409 ~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
..++|+..|+++..+|+++|++||++++++.+|..+|.+|+++++.|.++|+..|.|+|||||||||||.+||++|++.+
T Consensus 491 ~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag 570 (802)
T KOG0733|consen 491 SKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG 570 (802)
T ss_pred HhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 489 ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 489 ~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
.+|+.|++++|+++|||++|..+|++|.+|+.+.||||||||+|+|+++|+.++.+...+++|+||++|||.....+|+|
T Consensus 571 ~NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~v 650 (802)
T KOG0733|consen 571 ANFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYV 650 (802)
T ss_pred CceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc--cCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
|+|||+|+.+|||++||||||+.+|+++|+.++|..||+.+.+ +.+++.+++++.||....|+||+|+||..+|++|.
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREAS 730 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 88899999999999888888999999999999999
Q ss_pred HHHHHHHHhhcCCCCC-----CCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 647 MAALEDKLISSKSSSD-----VTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~-----~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
+.|+++.+........ .....+++.||++|+++++||+++.+...|+.+.++++
T Consensus 731 i~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 731 ILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 9999998864432211 11235788999999999999999999999999988754
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-93 Score=759.37 Aligned_cols=512 Identities=46% Similarity=0.812 Sum_probs=489.0
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
..++ ++++|.......+.+.+..|++++..+...|++++.++|+|||||||||.+++++|++.++.++.+++..+..++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 3446 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhC-CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 199 SGASEENIRDLFSKAYRTA-PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
.|+++..++..|+.+.... |+++||||+|.+++++..... ..+++..+|+.+|++... .++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~-----------------~~~ 320 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKP-----------------DAK 320 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcC-----------------cCc
Confidence 9999999999999999998 999999999999998877655 789999999999997642 467
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
++||++||.++.|||+++| |||++.+.+..|+..+|.+|++.++++++...+.++..++..+.||+|+||..+|++|..
T Consensus 321 vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~ 399 (693)
T KOG0730|consen 321 VIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASL 399 (693)
T ss_pred EEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999998877899999999999999999999999988
Q ss_pred HHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccc
Q 045279 358 LAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYL 437 (702)
Q Consensus 358 ~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~ 437 (702)
.+.++ +.++|..+...++|+..++.....|++.|++|||++++
T Consensus 400 ~~~r~-------------------------------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~l 442 (693)
T KOG0730|consen 400 QATRR-------------------------------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEEL 442 (693)
T ss_pred HHhhh-------------------------------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHH
Confidence 77665 35678889999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHH
Q 045279 438 RHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 438 k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
|..+++.|.|+++|++.|.++|+.+|+|+|||||||||||++||++|++++++|+.+++++++++|+|++|..++.+|.+
T Consensus 443 K~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~k 522 (693)
T KOG0730|consen 443 KRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRK 522 (693)
T ss_pred HHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCC
Q 045279 518 ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 518 a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
|+...||||||||||++.+.|+++.+++.++++++||++|||.....+|+||+|||+|+.||+|++||||||++||||+|
T Consensus 523 AR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplP 602 (693)
T KOG0730|consen 523 ARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLP 602 (693)
T ss_pred HhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCc
Confidence 99999999999999999999998878899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 598 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+.+.|.+||+.+++++++..++|++.|| ..|+||||+||.++|++|+..|+++.+.. ..|+.+||++|+
T Consensus 603 D~~aR~~Ilk~~~kkmp~~~~vdl~~La--~~T~g~SGAel~~lCq~A~~~a~~e~i~a---------~~i~~~hf~~al 671 (693)
T KOG0730|consen 603 DLEARLEILKQCAKKMPFSEDVDLEELA--QATEGYSGAEIVAVCQEAALLALRESIEA---------TEITWQHFEEAL 671 (693)
T ss_pred cHHHHHHHHHHHHhcCCCCccccHHHHH--HHhccCChHHHHHHHHHHHHHHHHHhccc---------ccccHHHHHHHH
Confidence 9999999999999999999999999999 67899999999999999999999998753 379999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHHH
Q 045279 678 SKISPSVSELQIQRYKTLSET 698 (702)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~ 698 (702)
+.++++++..+++.|+.|.+.
T Consensus 672 ~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 672 KAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HhhcccCCHHHHHHHHHHhhc
Confidence 999999999999999999875
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.4e-78 Score=703.37 Aligned_cols=551 Identities=48% Similarity=0.804 Sum_probs=495.9
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
+.++|+||+|++.+++.+.+.+..|+.+|+++..+|+.++.++||+||||||||++++++|+.++.+++.+++.++.+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~ 252 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY 252 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeE
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYV 278 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v 278 (702)
.|..+..+..+|+.+....|+||||||||.+.+.++....+...++...|+..|++... .+.+
T Consensus 253 ~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~-----------------~~~v 315 (733)
T TIGR01243 253 YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG-----------------RGRV 315 (733)
T ss_pred ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc-----------------CCCE
Confidence 99999999999999999999999999999999887665566677888999999986532 3559
Q ss_pred EEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 279 LVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 279 ~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
+||++||.++.+|+++++++||+..+.++.|+.++|.+||+.+.+...+..+.++..++..+.||+++|+..+|+.|...
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~ 395 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMA 395 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888777777899999999999999999999999999
Q ss_pred HHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccch
Q 045279 359 AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLR 438 (702)
Q Consensus 359 a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k 438 (702)
++++.+.......... ...........++.+||..++..+.|+..++.....|.+.|++++|++.+|
T Consensus 396 al~r~~~~~~~~~~~~-------------~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k 462 (733)
T TIGR01243 396 ALRRFIREGKINFEAE-------------EIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVK 462 (733)
T ss_pred HHHHHhhccccccccc-------------cccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHH
Confidence 9888765322111100 011112234568899999999999999888888888999999999999999
Q ss_pred hhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHH
Q 045279 439 HEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA 518 (702)
Q Consensus 439 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a 518 (702)
+.|.+.+.+++.+++.+.++|..++.|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++..++.+|..|
T Consensus 463 ~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A 542 (733)
T TIGR01243 463 QELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA 542 (733)
T ss_pred HHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCeEEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCC
Q 045279 519 RTCSPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
+...||||||||+|.+++.|+... .....+++++||.+|++.....+++||+|||+|+.||++++||||||.+|+||+|
T Consensus 543 ~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~P 622 (733)
T TIGR01243 543 RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPP 622 (733)
T ss_pred HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCc
Confidence 999999999999999999887543 4466899999999999988888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC-------CCCCCccccH
Q 045279 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS-------SDVTPFTIKL 670 (702)
Q Consensus 598 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~-------~~~~~~~i~~ 670 (702)
+.++|.+||+.+.++.++..+++++.+| ..|+||+|+||.++|++|++.|+++........ .......|++
T Consensus 623 d~~~R~~i~~~~~~~~~~~~~~~l~~la--~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 700 (733)
T TIGR01243 623 DEEARKEIFKIHTRSMPLAEDVDLEELA--EMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEM 700 (733)
T ss_pred CHHHHHHHHHHHhcCCCCCccCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccH
Confidence 9999999999999999998899999999 679999999999999999999999865422100 0112357999
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 671 THFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 671 ~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
+||+.|+++++|+++++++..|++|.+.|+.
T Consensus 701 ~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 701 RHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999874
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-76 Score=630.98 Aligned_cols=535 Identities=36% Similarity=0.617 Sum_probs=448.0
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHH
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENI 206 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~ 206 (702)
-+++..+..+...+ .|-..|. ..+......+||+|+||||||+++++.|.+++.+++.++|.++.+...+.++.++
T Consensus 404 ~~~~~~~~~l~~vl-~p~~~~s---~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl 479 (953)
T KOG0736|consen 404 PGLEAKVLELVAVL-SPQKQPS---GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKL 479 (953)
T ss_pred ccchHHHHHHHHHh-CcccCcc---hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHH
Confidence 44555555454333 3333322 2234455679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh-hhccccCCCCCCCCCCCCCCCCCeEEEEEecC
Q 045279 207 RDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD-ESHRLVQPGDQKSKSDASDSKPGYVLVIGATN 285 (702)
Q Consensus 207 ~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld-~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn 285 (702)
..+|..|+...|+|||+-++|.+..+..+ ....++...+-..+. +. .....+.++||++|+
T Consensus 480 ~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~---------------~~~~~~~~ivv~t~~ 541 (953)
T KOG0736|consen 480 QAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNED---------------FKFSCPPVIVVATTS 541 (953)
T ss_pred HHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhccc---------------ccCCCCceEEEEecc
Confidence 99999999999999999999998855433 222344444433333 10 011234599999999
Q ss_pred CCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045279 286 RPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIID 365 (702)
Q Consensus 286 ~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~ 365 (702)
..+.+++.+++ -|.++|.++.|+.++|.+||+.++....+..++....++..+.||+.+++..++..+-..+..++..
T Consensus 542 s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~ 619 (953)
T KOG0736|consen 542 SIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKN 619 (953)
T ss_pred ccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHh
Confidence 99999999999 7878899999999999999999999999888889999999999999999999998885555555544
Q ss_pred hhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc-CccccccCCccccccCCcccchhhhHHH
Q 045279 366 QRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR-REGFSAIPNVKWEDVGGLDYLRHEFDRY 444 (702)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~-~~~~~~~~~~~~~~i~g~~~~k~~l~~~ 444 (702)
.. +.... .+.....|. .....++++||.+++...+.... .-+...+|++.|+||||++++|..+.+.
T Consensus 620 ~~---l~g~~-~~~~~~~~~--------~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldT 687 (953)
T KOG0736|consen 620 KG---LAGGL-QEEDEGELC--------AAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDT 687 (953)
T ss_pred hc---ccccc-hhccccccc--------cccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHH
Confidence 33 11111 111111111 12257899999999987765432 2356678999999999999999999999
Q ss_pred HHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCe
Q 045279 445 IVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPC 524 (702)
Q Consensus 445 i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~ 524 (702)
|..|++|+++|.. |++++.|+|||||||||||.+||++|.++..+|+.|++++++++|+|++|+++|.+|++||..+||
T Consensus 688 IqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PC 766 (953)
T KOG0736|consen 688 IQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPC 766 (953)
T ss_pred hcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCe
Confidence 9999999999986 888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcchhhcccCCC--CchHHHHHHHHHHHhhhCCC--CCCcEEEEEecCCCCccCccccCCCccceEEEcCCCC-H
Q 045279 525 ILFFDEVDALTTKRGKE--GGWVVERLLNQLLIELDGAD--KRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPT-P 599 (702)
Q Consensus 525 vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~--~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~-~ 599 (702)
||||||+|+++++|+.+ +++++++++.+||.+|||.. ..+.+|||+|||||+.|||+++||||||+.+|+.+++ .
T Consensus 767 VIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~ 846 (953)
T KOG0736|consen 767 VIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDA 846 (953)
T ss_pred EEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccH
Confidence 99999999999999765 56799999999999999986 5788999999999999999999999999999999886 5
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHhhhhcC-CCCCHHHHHHHHHHHHHHHHHHHHhhcC------CCCCCCCccccHHH
Q 045279 600 DERGLILEALARKKPIDDSVDLHTIAQSKFC-ENLSGADLAAMMNEAAMAALEDKLISSK------SSSDVTPFTIKLTH 672 (702)
Q Consensus 600 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~~-~~~sg~dl~~~~~~a~~~a~~~~~~~~~------~~~~~~~~~i~~~d 672 (702)
+.+..|++...++++++.++++..+|. .| ..|+|+|+-.+|.+|.+.|+++...... ...+.....|+++|
T Consensus 847 esk~~vL~AlTrkFkLdedVdL~eiAk--~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eD 924 (953)
T KOG0736|consen 847 ESKLRVLEALTRKFKLDEDVDLVEIAK--KCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMED 924 (953)
T ss_pred HHHHHHHHHHHHHccCCCCcCHHHHHh--hCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHH
Confidence 678899999999999999999999994 45 4999999999999999999999876443 12344567899999
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 673 FEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 673 ~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
|.+|.++..||++++++.+|+++++.|.
T Consensus 925 flks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 925 FLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999986
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-68 Score=561.11 Aligned_cols=515 Identities=34% Similarity=0.516 Sum_probs=430.9
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEechhhhcccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISATEVVSGVS 199 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~~l~~~~~ 199 (702)
.+++-...+|++..+....| +....++||.||+|||||.|++++++++. +++..++|+.+...-.
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 55666666666666544333 33456799999999999999999999874 5677899999877666
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcc--hhhhHHHHHHHHHHHHHHHh-hhccccCCCCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKR--ENLQREMERRIVTQLMTCMD-ESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~--~~~~~~~~~~~~~~ll~~ld-~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
....+.+..+|..+..++|+|+++|++|.+++.. ++.+.......+..++..+- .+.. ...
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~----------------~~~ 540 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK----------------RNR 540 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc----------------cCc
Confidence 6677788999999999999999999999999732 23344444444555554333 2221 234
Q ss_pred eEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 277 YVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 277 ~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.+.|||+.+....++|.|.++++|+.++.++.|...+|.+||..++.+.... ...++.-++..|+||...|+..++++|
T Consensus 541 ~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRa 620 (952)
T KOG0735|consen 541 KIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERA 620 (952)
T ss_pred EEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHH
Confidence 4899999999999999999999999999999999999999999988776533 233566699999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccC-CccccccCCc
Q 045279 356 GNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIP-NVKWEDVGGL 434 (702)
Q Consensus 356 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~-~~~~~~i~g~ 434 (702)
...+...-... ..+ .+|.++|.++++.+.|...|......+ ...|++++|+
T Consensus 621 i~~a~leris~---------------------------~~k-lltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~ 672 (952)
T KOG0735|consen 621 IHEAFLERISN---------------------------GPK-LLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGL 672 (952)
T ss_pred HHHHHHHHhcc---------------------------Ccc-cchHHHHHHHHHhcChHHhhhccccccCCCCceecccH
Confidence 98876322111 112 678999999999999988876654444 4899999999
Q ss_pred ccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHH
Q 045279 435 DYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTL 514 (702)
Q Consensus 435 ~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~ 514 (702)
.++|+.+.+.+.+|.+|+.+|...+++.+.|+|||||||||||.+|.++|..++..|+.+++++++++|+|.+|+++|.+
T Consensus 673 ~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~l 752 (952)
T KOG0735|consen 673 FEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDL 752 (952)
T ss_pred HHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 515 FSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 515 f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
|.+|+...||||||||+|+++++|+-++.++.++++|+||++|||..+-++|+|++||.+|+.||||++||||+|+.++.
T Consensus 753 F~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C 832 (952)
T KOG0735|consen 753 FERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYC 832 (952)
T ss_pred HHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHH
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFE 674 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~ 674 (702)
|+|++.+|.+|++.+........++|++.+| ..|+||+|+||..++-.|.+.|+.+...... .....+.++...+.
T Consensus 833 ~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a--~~T~g~tgADlq~ll~~A~l~avh~~l~~~~--~~~~~p~~~~~~~~ 908 (952)
T KOG0735|consen 833 PLPDEPERLEILQVLSNSLLKDTDVDLECLA--QKTDGFTGADLQSLLYNAQLAAVHEILKRED--EEGVVPSIDDASLE 908 (952)
T ss_pred CCCCcHHHHHHHHHHhhccCCccccchHHHh--hhcCCCchhhHHHHHHHHHHHHHHHHHHhcC--ccccCCccchhhhh
Confidence 9999999999999999999999999999999 6799999999999999999999999886543 12222234444444
Q ss_pred HH--HhhcCCCCCHHHHHHHHHHHH
Q 045279 675 QA--LSKISPSVSELQIQRYKTLSE 697 (702)
Q Consensus 675 ~a--l~~~~~~~~~~~~~~~~~~~~ 697 (702)
.. ..+.+|+.+.-+-..+.....
T Consensus 909 si~~~~~~~~s~~~~~~~~~~~~~~ 933 (952)
T KOG0735|consen 909 SIFSDSKRKPSRSALDNRKGQDVYS 933 (952)
T ss_pred hhhhccCCCccccccchhhhhhHHH
Confidence 33 346677777644444444333
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-60 Score=532.14 Aligned_cols=489 Identities=48% Similarity=0.739 Sum_probs=445.0
Q ss_pred hhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceE
Q 045279 142 VPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIV 221 (702)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il 221 (702)
.++.++..+..++..++.+++++||||||||+++++++.. +..+..+++......+.|..+..+..+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 3566677778889999999999999999999999999999 666688999999999999999999999999999999999
Q ss_pred EechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcc
Q 045279 222 FIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFD 301 (702)
Q Consensus 222 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~ 301 (702)
++||+|.+.+.+.........++..+++..+++.. ... +.+++.+|.+..+++++++++||+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-----------------~~~-v~~~~~~~~~~~~~~a~~~~~~~~ 142 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-----------------RGQ-VIVIGATNRPDGLDPAKRRPGRFD 142 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-----------------CCc-eEEEeecCCccccChhHhCccccc
Confidence 99999999998877666778899999999988653 123 889999999999999999999999
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccC
Q 045279 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHS 381 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~ 381 (702)
..+.+..|+...+.+|+.............+...++..+.||.+.++..++..+...+.++...
T Consensus 143 ~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~---------------- 206 (494)
T COG0464 143 REIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAID---------------- 206 (494)
T ss_pred eeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhc----------------
Confidence 9999999999999999999888887777788999999999999999999999998888887640
Q ss_pred cccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCC
Q 045279 382 DDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVD 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~ 461 (702)
.......++.+++..+++.+.|+ +......+.+.|.+++|++.++..+.+.+.+++++++.|.+.+..
T Consensus 207 ----------~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~ 274 (494)
T COG0464 207 ----------LVGEYIGVTEDDFEEALKKVLPS--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLR 274 (494)
T ss_pred ----------cCcccccccHHHHHHHHHhcCcc--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCC
Confidence 00122467889999999998887 555667789999999999999999999999999999999999999
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE 541 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~ 541 (702)
++.|+|||||||||||++|+++|.+++.+|+.+..++++++|+|+++++++.+|..|+...||||||||+|++.+.|+.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~ 354 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS 354 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCC--CCCC
Q 045279 542 GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPI--DDSV 619 (702)
Q Consensus 542 ~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~--~~~~ 619 (702)
......++++++|.+|++.....+|+||+|||+|+.+|++++||||||..|+||+|+.++|.+||+.+++.... ..++
T Consensus 355 ~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~ 434 (494)
T COG0464 355 EDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDV 434 (494)
T ss_pred CchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhh
Confidence 77766899999999999999999999999999999999999999999999999999999999999999996554 5678
Q ss_pred CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 045279 620 DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTL 695 (702)
Q Consensus 620 ~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~ 695 (702)
+++.++ ..++||+|+||..+|++|++.++++.. ...|+++||..|+++++|+++ |++|
T Consensus 435 ~~~~l~--~~t~~~sgadi~~i~~ea~~~~~~~~~----------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 435 DLEELA--EITEGYSGADIAALVREAALEALREAR----------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred hHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHHhc----------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 999999 578999999999999999999999874 237999999999999999988 7766
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-56 Score=440.89 Aligned_cols=251 Identities=45% Similarity=0.721 Sum_probs=239.7
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|+++|++|||+++.++.+++.+..|+++|++|.++|+.||+|+|||||||||||.+||++|++.++.|+.+.+|+
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 34566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
|+.+|+|++.+.+|.+|+.|+.+.||||||||||++..+|.+++ ....++.+-+||++|||+....++-||+|||++
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 99999999999999999999999999999999999999997653 346788889999999999999999999999999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
+.||||++||||||+.|+||+|+.+.|.+||+.+.+++.+..++|++.+| ..|+||||+||+++|.+|++.|+++...
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la--~~~~g~sGAdlkaictEAGm~AiR~~R~ 378 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA--RLTEGFSGADLKAICTEAGMFAIRERRD 378 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHH--HhcCCCchHHHHHHHHHHhHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999 7899999999999999999999999765
Q ss_pred hcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 656 SSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 656 ~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
.||++||.+|..++..
T Consensus 379 -----------~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 379 -----------EVTMEDFLKAVEKVVK 394 (406)
T ss_pred -----------eecHHHHHHHHHHHHh
Confidence 8999999999998854
No 8
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-50 Score=401.14 Aligned_cols=280 Identities=35% Similarity=0.595 Sum_probs=256.0
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
......|+++|+||.|+.++|+.|.+++..|+..|+.|.. ..+|.+|+|++||||||||+|||++|.+++..|+.|+.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 3455678999999999999999999999999999999986 467889999999999999999999999999999999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCC----CCcEEEEEec
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADK----RKGVFVIGAT 572 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~----~~~~~vI~at 572 (702)
.+.++|.|++|+.+|-+|+.|+...|++|||||||+|+.+|+.+. +..++++.++||.+|||..+ ...|+|++||
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999999998764 56789999999999999643 2449999999
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~ 652 (702)
|.|+.||.||+| ||.+.|++|+|+.+.|..+++..++......+++++.++ ..++||||+||+++|++|.+.++++
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~la--e~~eGySGaDI~nvCreAsm~~mRR 435 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLA--ERSEGYSGADITNVCREASMMAMRR 435 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHH--HHhcCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999 6689999999999999999999998
Q ss_pred HHhhcC------CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Q 045279 653 KLISSK------SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702 (702)
Q Consensus 653 ~~~~~~------~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (702)
...... ...++....|+..||+.|+++++||++...+.+|++|...|+++
T Consensus 436 ~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 436 KIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 875432 11222235799999999999999999999999999999999975
No 9
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-47 Score=379.15 Aligned_cols=249 Identities=43% Similarity=0.695 Sum_probs=229.8
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.-..+.++++||+|+++.+++|++.|..|+.+|++|..+|+.||.|||||||||||||.||+|+|++.++.|+.+.++++
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 33478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH---HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR---EMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+..|.|+....++++|..|+..+||||||||||.+...+..... ....|.+-+||.+||++..
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~-------------- 287 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP-------------- 287 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--------------
Confidence 99999999999999999999999999999999999988865432 2335566678888887653
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
.++|-||+|||+++.|||||+||||||+.|+||.|+.+.|.+||+.+.+++.+..++++..+++.++|++|+||+++
T Consensus 288 ---~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 288 ---RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAI 364 (406)
T ss_pred ---CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
|.+|.+.|++.- +..+|++||.++.+.+.
T Consensus 365 ctEAGm~AiR~~--------------------------------R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 365 CTEAGMFAIRER--------------------------------RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHhHHHHHhc--------------------------------cCeecHHHHHHHHHHHH
Confidence 999999998751 24789999999988764
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-46 Score=351.68 Aligned_cols=249 Identities=38% Similarity=0.657 Sum_probs=235.3
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|+++|.++||++-.|+.+++++..|+.|.++|+++|+.||+|+|+|||||||||++|+++|+.....|+.+.+++|+
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
.+|.|++...+|.+|..|+.+.|+||||||+|+++.+|-+.. .....+++-+||++|||+....++-||++||+.+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 999999999999999999999999999999999999996553 34678899999999999999999999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
||||++||||+|+.|+||+|+..+++-+|.....++.+..++|++.+. ..-+..||+||..+|++|.+.|+++...
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v--~rpdkis~adi~aicqeagm~avr~nry-- 382 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLV--ARPDKISGADINAICQEAGMLAVRENRY-- 382 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHh--cCccccchhhHHHHHHHHhHHHHHhcce--
Confidence 999999999999999999999999999999999999999999999998 5568999999999999999999999764
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCC
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
.|...||++|.+..-.
T Consensus 383 ---------vvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 383 ---------VVLQKDFEKAYKTVVK 398 (408)
T ss_pred ---------eeeHHHHHHHHHhhcC
Confidence 7899999999987643
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-46 Score=383.98 Aligned_cols=244 Identities=43% Similarity=0.692 Sum_probs=232.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+++|+|+-|.++.|+.|++ |...++.|+.|.++|-+.|+|+||+||||||||.|||++|.+.+.||+...+++|-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeE-iVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEE-IVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHH-HHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 47889999999999999998 56778999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcccc
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVL 583 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~ 583 (702)
||.+.+.+|.+|..|+++.||||||||||++.++|......+....+|+||.+|||+..+..++||+|||.|+.||+|+.
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhc
Confidence 99999999999999999999999999999999999888777899999999999999999999999999999999999999
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDV 663 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~ 663 (702)
||||||++|.+|.||...|.+||+.++.+.....++|..-|| .-|.||+|+||.|+|+.|+..|..+...
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiA--RGT~GFsGAdLaNlVNqAAlkAa~dga~-------- 527 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIA--RGTPGFSGADLANLVNQAALKAAVDGAE-------- 527 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhc--cCCCCCchHHHHHHHHHHHHHHHhcCcc--------
Confidence 999999999999999999999999999999999999999999 4588999999999999999888877654
Q ss_pred CCccccHHHHHHHHhhcC
Q 045279 664 TPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 664 ~~~~i~~~d~~~al~~~~ 681 (702)
.+++.|++.|-+++-
T Consensus 528 ---~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 528 ---MVTMKHLEFAKDRIL 542 (752)
T ss_pred ---cccHHHHhhhhhhee
Confidence 799999999999873
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-46 Score=361.79 Aligned_cols=278 Identities=32% Similarity=0.590 Sum_probs=253.8
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|+++|+++.|++..|+.|.+++..|++.|++|.. +..|.+||||||||||||++||+++|.+.+..|+.|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 345679999999999999999999999999999999985 5678899999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-CCCCcEEEEEecCCCCc
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-DKRKGVFVIGATNRPDV 577 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-~~~~~~~vI~atn~~~~ 577 (702)
++++|.|+++..++++|+.|+.+.|+||||||||++++.|+++.+...+++..+||.+|.|. ...+.++|++|||.|+.
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~ 281 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWV 281 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999997 45678999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
||.|+.| ||++.||+|+|+...|..+|+.++...+.. .+.|+..|+ ..|+||||+||.-+++.|.+..++.....
T Consensus 282 LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~--~kTeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 282 LDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELA--RKTEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred HHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHH--hhcCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 9999999 999999999999999999999999987655 467899999 67999999999999999999999986531
Q ss_pred cC-----------------------------------CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 657 SK-----------------------------------SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 657 ~~-----------------------------------~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.- .......+.||+.||.+++.+++|.+++.++...++|.+.|+.
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 10 0011234579999999999999999999999999999999985
No 13
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.8e-42 Score=377.21 Aligned_cols=396 Identities=23% Similarity=0.380 Sum_probs=301.7
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCC
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRP 297 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~ 297 (702)
|.|+++.|+|.++.+. . ..+.+..+...+.. .+..+++++ . ...+++.|.+
T Consensus 82 ~~~~vl~d~h~~~~~~-----~-~~r~l~~l~~~~~~-------------------~~~~~i~~~-~--~~~~p~el~~- 132 (489)
T CHL00195 82 PALFLLKDFNRFLNDI-----S-ISRKLRNLSRILKT-------------------QPKTIIIIA-S--ELNIPKELKD- 132 (489)
T ss_pred CcEEEEecchhhhcch-----H-HHHHHHHHHHHHHh-------------------CCCEEEEEc-C--CCCCCHHHHh-
Confidence 6899999999887321 1 22333333333332 123344444 2 2457777776
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCcc
Q 045279 298 GRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSI 376 (702)
Q Consensus 298 ~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~ 376 (702)
-+ .++.++.|+.+++.+++..+....... ....+..+++.+.|++..+++.++..+.... .. +
T Consensus 133 -~~-~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-------~~-------~ 196 (489)
T CHL00195 133 -LI-TVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-------KT-------I 196 (489)
T ss_pred -ce-eEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------CC-------C
Confidence 33 678999999999999998887654333 2345788999999999999998877543210 00 0
Q ss_pred ccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcccc-ccCCccccccCCcccchhhhHHHHHHHhhChHHH
Q 045279 377 AEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFS-AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEY 455 (702)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~-~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~ 455 (702)
+ .+ ......+.-.+.+.. . .... ..+...|++++|++.+|+++.+.... .....
T Consensus 197 ~-------------~~---~~~~i~~~k~q~~~~---~---~~le~~~~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~ 251 (489)
T CHL00195 197 D-------------EN---SIPLILEEKKQIISQ---T---EILEFYSVNEKISDIGGLDNLKDWLKKRSTS---FSKQA 251 (489)
T ss_pred C-------------hh---hHHHHHHHHHHHHhh---h---ccccccCCCCCHHHhcCHHHHHHHHHHHHHH---hhHHH
Confidence 0 00 000001111111111 0 1111 12467899999999999988764322 23455
Q ss_pred HHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 456 EEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 456 ~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
.++|.++++|+|||||||||||++|+++|++++.+|+.++++.+.++|+|+++..++++|..|+...||||||||+|.+.
T Consensus 252 ~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~ 331 (489)
T CHL00195 252 SNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAF 331 (489)
T ss_pred HhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhh
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccCC-CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 536 TKRGK-EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 536 ~~r~~-~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
.+++. +..+...+++++++..|+. ...+++||+|||+++.||++++||||||.+|+|++|+.++|.+||+.++++..
T Consensus 332 ~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~ 409 (489)
T CHL00195 332 SNSESKGDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFR 409 (489)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcC
Confidence 76543 3445678999999999985 34679999999999999999999999999999999999999999999999865
Q ss_pred CC--CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCC--CCHHHHH
Q 045279 615 ID--DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPS--VSELQIQ 690 (702)
Q Consensus 615 ~~--~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~--~~~~~~~ 690 (702)
.. .+.+++.+| ..|+||+|+||+++|++|+..|+.+. ..++.+||..|++++.|. ...++++
T Consensus 410 ~~~~~~~dl~~La--~~T~GfSGAdI~~lv~eA~~~A~~~~------------~~lt~~dl~~a~~~~~Pls~~~~e~i~ 475 (489)
T CHL00195 410 PKSWKKYDIKKLS--KLSNKFSGAEIEQSIIEAMYIAFYEK------------REFTTDDILLALKQFIPLAQTEKEQIE 475 (489)
T ss_pred CCcccccCHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHcC------------CCcCHHHHHHHHHhcCCCcccCHHHHH
Confidence 43 478899999 67899999999999999998887653 268999999999999996 4667899
Q ss_pred HHHHHHHHH
Q 045279 691 RYKTLSETF 699 (702)
Q Consensus 691 ~~~~~~~~~ 699 (702)
.+++|...-
T Consensus 476 ~~~~Wa~~~ 484 (489)
T CHL00195 476 ALQNWASSG 484 (489)
T ss_pred HHHHHHHcC
Confidence 999998753
No 14
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-44 Score=386.35 Aligned_cols=257 Identities=43% Similarity=0.692 Sum_probs=240.3
Q ss_pred cccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Q 045279 112 AEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA 191 (702)
Q Consensus 112 ~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~ 191 (702)
.+...+.++++|+||+|++++|.+|++.|.+|++||+.|.++|+.++++||||||||||||++|+++|++.+.+|+.+.+
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg 501 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG 501 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.++.+.|+|+++..++.+|.+|+...|+|+|+||||.+...++....+...|++++||+.||+...
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~-------------- 567 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA-------------- 567 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--------------
Confidence 999999999999999999999999999999999999999999765668889999999999998764
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
..+|+||||||+|+.||+|++||||||+.|++++|+.+.|.+||+..++++.+..++++..+|..|+||+|+||..+
T Consensus 568 ---~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~l 644 (693)
T KOG0730|consen 568 ---LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAV 644 (693)
T ss_pred ---cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
|++|+..+++..+.. ..|+..+|+++++...++.
T Consensus 645 Cq~A~~~a~~e~i~a------------------------------~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 645 CQEAALLALRESIEA------------------------------TEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHHHHhccc------------------------------ccccHHHHHHHHHhhcccC
Confidence 999999999876541 3578899999998877654
No 15
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=342.07 Aligned_cols=256 Identities=38% Similarity=0.632 Sum_probs=239.4
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
..+|+.+|+.+||++...+.+.+.|..|.+||++|..+|+..|+|+|||||||||||.+|+++|....+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
.+|+|++.+.+|.+|-.|+...|+|||+||||++...|.+++ .+...+.+-+||+++||+....++-||+|||+.+.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 999999999999999999999999999999999999886543 45678888999999999999999999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|||++||||+|+.|+||+|+.+.|.+|++.+-+++.+....++..+| ....|.||++++.+|-+|.+.|+++..-
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kia--ekm~gasgaevk~vcteagm~alrerrv-- 374 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIA--EKMPGASGAEVKGVCTEAGMYALRERRV-- 374 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHH--HhCCCCccchhhhhhhhhhHHHHHHhhc--
Confidence 999999999999999999999999999999999999999999999999 5678999999999999999999999764
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCCCCCHHHH
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISPSVSELQI 689 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 689 (702)
.+|++||+.|..++-..-++..+
T Consensus 375 ---------hvtqedfemav~kvm~k~~e~nm 397 (404)
T KOG0728|consen 375 ---------HVTQEDFEMAVAKVMQKDSEKNM 397 (404)
T ss_pred ---------cccHHHHHHHHHHHHhccccccc
Confidence 89999999999988654444333
No 16
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-43 Score=363.84 Aligned_cols=444 Identities=30% Similarity=0.479 Sum_probs=336.9
Q ss_pred CCCCCccc--ccCHHHHHHHHHH-HhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechh
Q 045279 118 KEGPRFQD--LGGMESVLEELKM-EVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV-PFYKISATE 193 (702)
Q Consensus 118 ~~~~~~~~--i~G~~~~k~~l~~-~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-~~~~i~~~~ 193 (702)
.+...|.+ |+|++.....+-. +....+.-|++.+++|++..+|+|||||||||||.+||.|.+.++. +--.+|+.+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 55666766 6899999877654 4455667779999999999999999999999999999999999974 446789999
Q ss_pred hhcccccccHHHHHHHHHHHHhhC--------CceEEechhhHhhhcchhh--hHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAYRTA--------PSIVFIDEIDAIASKRENL--QREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~~~~--------p~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
+.+.|+|+++.+++.+|..|.... --||++||||.++..+++. .......++++||.-||+...
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq------ 366 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ------ 366 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh------
Confidence 999999999999999999987431 2399999999999988764 346778999999999998765
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc----cCCcccHHHHHhh
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR----VEGSFDLVKIARS 339 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~----~~~~~~~~~la~~ 339 (702)
-.+|+|||.||+.+.||.||+|||||...+++..|++.-|++|++.+.+++. +..++++.++|..
T Consensus 367 -----------LNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~l 435 (744)
T KOG0741|consen 367 -----------LNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAAL 435 (744)
T ss_pred -----------hhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHH
Confidence 2459999999999999999999999999999999999999999998877653 5667899999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcc
Q 045279 340 TPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG 419 (702)
Q Consensus 340 t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~ 419 (702)
|.+|+|++|..+++.|...|+.|.+.... .....+...+.+.++..||..++..++|......
T Consensus 436 TKNfSGAEleglVksA~S~A~nR~vk~~~-----------------~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~se 498 (744)
T KOG0741|consen 436 TKNFSGAELEGLVKSAQSFAMNRHVKAGG-----------------KVEVDPVAIENLKVTRGDFLNALEDVKPAFGISE 498 (744)
T ss_pred hcCCchhHHHHHHHHHHHHHHHhhhccCc-----------------ceecCchhhhheeecHHHHHHHHHhcCcccCCCH
Confidence 99999999999999999999998764321 0112344566789999999999999998764211
Q ss_pred ccccCCccccc--cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 420 FSAIPNVKWED--VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 420 ~~~~~~~~~~~--i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
. .++. ..|+-.--..+.+.+.....+.+..+.-...+-.++||.||||+|||+||-.+|...+.||+.+-.+
T Consensus 499 e------~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSp 572 (744)
T KOG0741|consen 499 E------DLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISP 572 (744)
T ss_pred H------HHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeCh
Confidence 0 0000 1111111111111111111111222222335567799999999999999999999999999988665
Q ss_pred cccccCcCchHH----HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCC-CcEEEEEec
Q 045279 498 ELLNKYVGESEL----AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR-KGVFVIGAT 572 (702)
Q Consensus 498 ~l~~~~~g~~~~----~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~vI~at 572 (702)
+-+ +|.+|. .++.+|+.|.+.+-+||++|+++.|..-..- +-.++.-+++.|+..+....+. .+.+|++||
T Consensus 573 e~m---iG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpI-GPRfSN~vlQaL~VllK~~ppkg~kLli~~TT 648 (744)
T KOG0741|consen 573 EDM---IGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPI-GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTT 648 (744)
T ss_pred HHc---cCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccccc-CchhhHHHHHHHHHHhccCCCCCceEEEEecc
Confidence 532 454443 4899999999989999999999998843211 2235567788888888776544 467777888
Q ss_pred CCCCccCc-cccCCCccceEEEcCCCCH-HHHHHHHH
Q 045279 573 NRPDVMDR-AVLRPGRFGKLLYVPLPTP-DERGLILE 607 (702)
Q Consensus 573 n~~~~ld~-a~~r~gRf~~~i~~~~p~~-~~r~~il~ 607 (702)
.+.+.|.. .++. .|+..+.+|..+. ++..+++.
T Consensus 649 S~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 649 SRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred cHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 77766554 3344 8999999998765 66666654
No 17
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-43 Score=371.31 Aligned_cols=271 Identities=38% Similarity=0.651 Sum_probs=243.4
Q ss_pred cccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Q 045279 112 AEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA 191 (702)
Q Consensus 112 ~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~ 191 (702)
-+.+..-+.++|+||+|++++..+|..++.+|+++|++|+.+|+..+.|||||||||||||.||+++|++.+..|+.|.+
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKG 578 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKG 578 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecC
Confidence 34466678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.+|.+.|+|+++..++.+|+.|+...|||||+||+|.|.+.++......+.|++++||..||++..
T Consensus 579 PELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~-------------- 644 (802)
T KOG0733|consen 579 PELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEE-------------- 644 (802)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccc--------------
Confidence 999999999999999999999999999999999999999999988889999999999999998754
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhc--CcccCCcccHHHHHhhCC--CCCHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR--NLRVEGSFDLVKIARSTP--GFVGAD 347 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~--~~~~~~~~~~~~la~~t~--g~~~~d 347 (702)
+..|.||||||+|+-||||++|||||+..+++++|+.++|.+||+.+++ +..+..+++++.+++.+. ||+|+|
T Consensus 645 ---R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGAD 721 (802)
T KOG0733|consen 645 ---RRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGAD 721 (802)
T ss_pred ---ccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhh
Confidence 4459999999999999999999999999999999999999999999999 666788899999999877 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 348 LAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 348 l~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
|..||++|...|+++.+...........+. .....+++.+|..+++.+.|+.
T Consensus 722 LaaLvreAsi~AL~~~~~~~~~~~~~~~~~----------------~~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 722 LAALVREASILALRESLFEIDSSEDDVTVR----------------SSTIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCccccee----------------eeeeeecHHHHHHHHHhcCCCc
Confidence 999999999999988776433211110000 0124678899999999988764
No 18
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-43 Score=392.15 Aligned_cols=457 Identities=21% Similarity=0.282 Sum_probs=361.7
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
++|.++|.++.++++++.+ ..+.++|.+|+|+||+|||.++..+|.+. +..++.++.
T Consensus 168 klDPvIGRd~EI~r~iqIL-------------~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQIL-------------SRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHH-------------hccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 7999999999999999877 45678999999999999999999999986 567899999
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh-HHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ-REMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.++.+ |.|+++.+++.+++......+.||||||||.+.+.+...+ ......++.+.|.
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA------------------ 296 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA------------------ 296 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh------------------
Confidence 999877 8999999999999999988899999999999998775433 2333444444443
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCC
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 343 (702)
+|.+.+||||+.-+ +-|+||.| || ..|.+..|+.++...||+.+...++.++.+.+.+-|
T Consensus 297 ------RGeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~A------ 361 (786)
T COG0542 297 ------RGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEA------ 361 (786)
T ss_pred ------cCCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHH------
Confidence 56799999998755 78999999 99 569999999999999999999999888887666433
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhh--------------------------h---
Q 045279 344 VGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEE--------------------------M--- 394 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~--- 394 (702)
+..|+.++.+++.++..|+++.+.+|+++++...... .|.. .
T Consensus 362 --------l~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~ 432 (786)
T COG0542 362 --------LVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLI 432 (786)
T ss_pred --------HHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6677888888888888899999999888876655322 1110 0
Q ss_pred h---hh--------------cccHhHHHHHHhccCCCCcC-------ccccccCCccccccCCcccchhhhHHHHHHHhh
Q 045279 395 E---RL--------------TITMTDFEEATKMVQPSSRR-------EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIK 450 (702)
Q Consensus 395 ~---~~--------------~i~~~d~~~~l~~~~p~~~~-------~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~ 450 (702)
. .+ .++.+++..++..|+.-... +.....+...-..+.|++.+...+.++|...
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra-- 510 (786)
T COG0542 433 DEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA-- 510 (786)
T ss_pred HHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--
Confidence 0 00 15556777777777643221 1112223334567899999988888877654
Q ss_pred ChHHHHHcCC----CCCcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEeccccccc------------CcCchHHHH
Q 045279 451 FPEEYEEFGV----DLETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGPELLNK------------YVGESELAV 511 (702)
Q Consensus 451 ~~~~~~~~~~----~~~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~------------~~g~~~~~~ 511 (702)
+.|+ +|..++||.||+|+|||.+|++||..+. .+++++++|++..+ |||+.+..
T Consensus 511 ------RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG- 583 (786)
T COG0542 511 ------RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG- 583 (786)
T ss_pred ------hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc-
Confidence 4454 3445789999999999999999999985 79999999999864 99988866
Q ss_pred HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCC-------
Q 045279 512 RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRP------- 575 (702)
Q Consensus 512 ~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~------- 575 (702)
.+.+.+++++++||+||||++.+ .+++|.||+.||.- ....+++||||||--
T Consensus 584 -~LTEaVRr~PySViLlDEIEKAH-----------pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~ 651 (786)
T COG0542 584 -QLTEAVRRKPYSVILLDEIEKAH-----------PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRD 651 (786)
T ss_pred -chhHhhhcCCCeEEEechhhhcC-----------HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhh
Confidence 68888899999999999999999 89999999999873 245679999999832
Q ss_pred ---------------------CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC-------CCC---CCCCHHHH
Q 045279 576 ---------------------DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK-------PID---DSVDLHTI 624 (702)
Q Consensus 576 ---------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~l 624 (702)
..+.|+|++ |+|.+|.|.+.+.+...+|+..++... ++. .+.-.+++
T Consensus 652 ~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l 729 (786)
T COG0542 652 ADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFL 729 (786)
T ss_pred ccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHH
Confidence 146678888 999999999999999999998876642 222 12235677
Q ss_pred hhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 625 AQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 625 a~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
+...+-..|.++-|+++|+.-....+.+.+..
T Consensus 730 ~~~gyd~~~GARpL~R~Iq~~i~~~La~~iL~ 761 (786)
T COG0542 730 AEKGYDPEYGARPLRRAIQQEIEDPLADEILF 761 (786)
T ss_pred HHhccCCCcCchHHHHHHHHHHHHHHHHHHHh
Confidence 87767778999999999999988888877654
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-43 Score=337.11 Aligned_cols=250 Identities=38% Similarity=0.633 Sum_probs=235.8
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
......|+++|.+++|..+..+.+++.+..++.|++.|-.+|+.||+|+|+|||||||||.+|+++|+..+..|+.+-+|
T Consensus 166 m~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigs 245 (435)
T KOG0729|consen 166 MQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGS 245 (435)
T ss_pred EEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhH
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+++.+|+|++...+|.+|+.|+....|||||||+|++.+.|-++ +.....+.+-+|+.+|||+....++-|+++||+
T Consensus 246 elvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnr 325 (435)
T KOG0729|consen 246 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNR 325 (435)
T ss_pred HHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCC
Confidence 99999999999999999999999999999999999999988554 334667888889999999999999999999999
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
|+.||||++||||+|+.++|.+|+.+.|..||+.+.+.+.+..++.++.+| .+|.+-+|++||.+|-+|.+.|++...
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ella--rlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLA--RLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHH--hhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 789999999999999999999999887
Q ss_pred hhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 655 ISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 655 ~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
. ..|..||..|..++
T Consensus 404 k-----------~atekdfl~av~kv 418 (435)
T KOG0729|consen 404 K-----------VATEKDFLDAVNKV 418 (435)
T ss_pred h-----------hhhHHHHHHHHHHH
Confidence 5 68889999999877
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-43 Score=341.54 Aligned_cols=249 Identities=37% Similarity=0.632 Sum_probs=232.9
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
....|..+|.+++|++...+.+.+.+..|+.||+.|..+|+.||+|++|||+||||||.||+++|+...+.|+++-++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 34557789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc---hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG---WVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
+.+|.|++.+.+|++|.-|...+|+|+||||||++..+|-+.++ ....+.+-+||+++||+.....+-||+|||+.+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 99999999999999999999999999999999999999855433 355667778889999999999999999999999
Q ss_pred ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 577 ~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.||||++||||+|+.|.||.||...+..||..+..++.+..+++++.+. ..-+.+||+||+++|-+|.+.|+++...
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li--~~kddlSGAdIkAictEaGllAlRerRm- 412 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELI--MTKDDLSGADIKAICTEAGLLALRERRM- 412 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHh--hcccccccccHHHHHHHHhHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999998 3347899999999999999999999887
Q ss_pred cCCCCCCCCccccHHHHHHHHhhcC
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.++++||.+|..++-
T Consensus 413 ----------~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 413 ----------KVTMEDFKKAKEKVL 427 (440)
T ss_pred ----------hccHHHHHHHHHHHH
Confidence 799999999988774
No 21
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-42 Score=328.17 Aligned_cols=247 Identities=35% Similarity=0.600 Sum_probs=233.4
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..|...|.+|||++...+.+.+++..++.|++.|.++|+.||+|+|+|||||||||.+|++.|.+.+..|+.+.++.++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 44677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
.|+|.+.+.+|..|+.|+...|+||||||+|++..+|.++. .....+.+-+||++|||+....++-||++||+.+.|
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiL 323 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDIL 323 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccccccc
Confidence 99999999999999999999999999999999999997653 346678888899999999999999999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
|||++|.||+|+.|+||.|+.+.|..|++.+.+++.+..+++++.+| .-|++|+|+..+.+|-+|.+.|+++...
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELa--RsTddFNGAQcKAVcVEAGMiALRr~at--- 398 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELA--RSTDDFNGAQCKAVCVEAGMIALRRGAT--- 398 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHh--hcccccCchhheeeehhhhHHHHhcccc---
Confidence 99999999999999999999999999999999999999999999999 5689999999999999999999998654
Q ss_pred CCCCCCCccccHHHHHHHHhhcC
Q 045279 659 SSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|+.+||..++..+.
T Consensus 399 --------ev~heDfmegI~eVq 413 (424)
T KOG0652|consen 399 --------EVTHEDFMEGILEVQ 413 (424)
T ss_pred --------cccHHHHHHHHHHHH
Confidence 799999999988764
No 22
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-42 Score=342.77 Aligned_cols=273 Identities=34% Similarity=0.582 Sum_probs=239.8
Q ss_pred ccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 113 EELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 113 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
.+...++.++|+||.|+.++|+-|.++|..|+..|+.|+.+ .+|.++||++||||||||+||+++|.+++..|+.|+.+
T Consensus 201 dIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss 279 (491)
T KOG0738|consen 201 DILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS 279 (491)
T ss_pred HHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh
Confidence 34556889999999999999999999999999999998853 56789999999999999999999999999999999999
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.+++.|.|++++.++-+|+.|+.++|++|||||||+|++.++.. ..+.++|+-.+||.+||+.+....
T Consensus 280 tltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e----------- 348 (491)
T KOG0738|consen 280 TLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE----------- 348 (491)
T ss_pred hhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-----------
Confidence 99999999999999999999999999999999999999988764 578899999999999998765221
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
....|+|+|+||.||+||.||+| ||...|++|+|+.+.|..+++..++........++..++..++||+|.||.++
T Consensus 349 --~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 349 --NSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred --cceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHH
Confidence 12349999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
|++|.+.+++|.+....++... +.. .+.. ..+++..||+.++..+.|+..
T Consensus 425 CreAsm~~mRR~i~g~~~~ei~-------------~la-kE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 425 CREASMMAMRRKIAGLTPREIR-------------QLA-KEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHHHHHHHHHHhcCCcHHhh-------------hhh-hhcc-ccccchhhHHHHHHHcCcCCC
Confidence 9999999999877654322111 000 1111 257899999999999988654
No 23
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-41 Score=385.26 Aligned_cols=458 Identities=20% Similarity=0.261 Sum_probs=325.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
+++.++|.++.++++.+.+ ..+.++++||+||||||||++|+++|..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL-------------~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHH-------------hccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 6899999999999999866 22456789999999999999999999874 456677777
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh-HHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ-REMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+.. .+.|+++.+++.+|..+....++||||||||.+.+.+.... .....+++.. .+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp---~L~--------------- 312 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKP---LLS--------------- 312 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHH---HHh---------------
Confidence 77764 47889999999999998877889999999999987654211 1111222222 222
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCC
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGF 343 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~ 343 (702)
.|.+.|||+||..+ ..|++|.| || ..|.++.|+.+++..|++.+...+...+.+.+...+
T Consensus 313 ------~g~i~vIgATt~~E~~~~~~~D~AL~r--RF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~a------ 377 (758)
T PRK11034 313 ------SGKIRVIGSTTYQEFSNIFEKDRALAR--RF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKA------ 377 (758)
T ss_pred ------CCCeEEEecCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHH------
Confidence 45699999999865 68999999 99 579999999999999999988888777666554333
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcc----
Q 045279 344 VGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG---- 419 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~---- 419 (702)
+..|+.++.+++.++..|+++.+.++++++...+.+. ......++.+|+...+..|..-.....
T Consensus 378 --------l~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~----~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~ 445 (758)
T PRK11034 378 --------VRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPV----SKRKKTVNVADIESVVARIARIPEKSVSQSD 445 (758)
T ss_pred --------HHHHHHHhhccccCccChHHHHHHHHHHHHhhccCcc----cccccccChhhHHHHHHHHhCCChhhhhhhH
Confidence 3334444444444455555555555555443322110 011235777888888877764321111
Q ss_pred ---ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 420 ---FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 420 ---~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
...+....-..+.|++.+++.+...+....... ....+|..++||+||||||||++|+++|..++.+|+.+++
T Consensus 446 ~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl----~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~ 521 (758)
T PRK11034 446 RDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGL----GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_pred HHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccc----cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeec
Confidence 111112223458899999888888775431100 0012344579999999999999999999999999999999
Q ss_pred ccccc------------cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC----
Q 045279 497 PELLN------------KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---- 560 (702)
Q Consensus 497 ~~l~~------------~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~---- 560 (702)
+++.. .|+|.... ..+.+.++..+++||||||+|.+. .++++.|++.|+..
T Consensus 522 se~~~~~~~~~LiG~~~gyvg~~~~--g~L~~~v~~~p~sVlllDEieka~-----------~~v~~~LLq~ld~G~ltd 588 (758)
T PRK11034 522 SEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAH-----------PDVFNLLLQVMDNGTLTD 588 (758)
T ss_pred hhhcccccHHHHcCCCCCccccccc--chHHHHHHhCCCcEEEeccHhhhh-----------HHHHHHHHHHHhcCeeec
Confidence 88753 24443221 134445566678999999999998 78999999999842
Q ss_pred -----CCCCcEEEEEecCCC-------------------------CccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 561 -----DKRKGVFVIGATNRP-------------------------DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 561 -----~~~~~~~vI~atn~~-------------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
....+++||+|||.. ..+.|.|++ |+|.+|.|++++.++..+|+..++
T Consensus 589 ~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 589 NNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred CCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 123578999999932 236678877 999999999999999999998765
Q ss_pred cc-------CCCCC---CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 611 RK-------KPIDD---SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 611 ~~-------~~~~~---~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.+ .++.. +.-++.|+...+...|.++.|+++++.-...++.+.+..
T Consensus 667 ~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~il~ 722 (758)
T PRK11034 667 VELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLF 722 (758)
T ss_pred HHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 52 22222 223567776666778889999999999999888887654
No 24
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=5.5e-41 Score=389.01 Aligned_cols=455 Identities=22% Similarity=0.307 Sum_probs=327.3
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
++++++|.++.+.++.+.+ ..+..+++||+||||||||++++++|+.+ +..++.+++
T Consensus 180 ~l~~~igr~~ei~~~~~~L-------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~ 246 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVL-------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDM 246 (731)
T ss_pred CCCcccCcHHHHHHHHHHH-------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecH
Confidence 7899999999999988766 33456789999999999999999999987 678999999
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
+.+.. .+.|+++.+++.+|+.+....++||||||+|.+.+.+....+. ....+.|...+.
T Consensus 247 ~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~---------------- 308 (731)
T TIGR02639 247 GSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS---------------- 308 (731)
T ss_pred HHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----------------
Confidence 99884 5889999999999999987778999999999998765322111 112222333333
Q ss_pred CCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFV 344 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~ 344 (702)
.|.+.+||+||..+ .+|+++.| ||. .|.++.|+.+++.+|++.....+...+... ++
T Consensus 309 -----~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~----------i~ 370 (731)
T TIGR02639 309 -----SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVK----------YS 370 (731)
T ss_pred -----CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcc----------cC
Confidence 35699999999743 68999999 995 799999999999999998776544322221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcC-------
Q 045279 345 GADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRR------- 417 (702)
Q Consensus 345 ~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~------- 417 (702)
... +..++..+.+++.++..|+++.+.++++++...+.+.. .....++.+|+..++..+..-...
T Consensus 371 ~~a----l~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~----~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~ 442 (731)
T TIGR02639 371 DEA----LEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKA----KKKANVSVKDIENVVAKMAHIPVKTVSVDDR 442 (731)
T ss_pred HHH----HHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccc----ccccccCHHHHHHHHHHHhCCChhhhhhHHH
Confidence 222 22333344444445555566666555555433322110 112458889999998877532210
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.....+.......+.|++.+++.+...+... +.|+ +|..+++|+||||||||++|+++|..++.+++.
T Consensus 443 ~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~ 514 (731)
T TIGR02639 443 EKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLER 514 (731)
T ss_pred HHHHHHHHHHhcceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEE
Confidence 1111222334556788888888777665443 3333 233458999999999999999999999999999
Q ss_pred Eeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-
Q 045279 494 IKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA- 560 (702)
Q Consensus 494 i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~- 560 (702)
++++++.+. |+|..+.. .+...++..+++||||||+|.+. ..+++.|++.|+..
T Consensus 515 ~d~se~~~~~~~~~lig~~~gyvg~~~~~--~l~~~~~~~p~~VvllDEieka~-----------~~~~~~Ll~~ld~g~ 581 (731)
T TIGR02639 515 FDMSEYMEKHTVSRLIGAPPGYVGFEQGG--LLTEAVRKHPHCVLLLDEIEKAH-----------PDIYNILLQVMDYAT 581 (731)
T ss_pred EeCchhhhcccHHHHhcCCCCCcccchhh--HHHHHHHhCCCeEEEEechhhcC-----------HHHHHHHHHhhccCe
Confidence 999887542 45543322 45566667788999999999998 78999999998863
Q ss_pred --------CCCCcEEEEEecCCCC-------------------------ccCccccCCCccceEEEcCCCCHHHHHHHHH
Q 045279 561 --------DKRKGVFVIGATNRPD-------------------------VMDRAVLRPGRFGKLLYVPLPTPDERGLILE 607 (702)
Q Consensus 561 --------~~~~~~~vI~atn~~~-------------------------~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~ 607 (702)
....+++||+|||... .+.|.|+. |||.+|.|.+++.++..+|++
T Consensus 582 ~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~ 659 (731)
T TIGR02639 582 LTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQ 659 (731)
T ss_pred eecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHH
Confidence 1245789999998631 25677776 999999999999999999998
Q ss_pred HHhccC-------CCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 608 ALARKK-------PID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 608 ~~~~~~-------~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
..+.+. ++. .+..++.++...+...|.++.|+++++.....++.+.+..
T Consensus 660 ~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~l~ 718 (731)
T TIGR02639 660 KFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEILF 718 (731)
T ss_pred HHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHHHh
Confidence 877631 111 2233567776667778899999999999998888877653
No 25
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-41 Score=371.51 Aligned_cols=244 Identities=45% Similarity=0.733 Sum_probs=228.5
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
..+.|.|+.|.+++|+.|.+ +...+++|+.|.++|...|+|+||+||||||||.|||++|.+.+.||+.+++++|+..+
T Consensus 306 t~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 45899999999999999998 55779999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCC----CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK----EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
+|.....+|.+|..|+...|||+||||||++...|++ ..+......+|+||.+|||+.....|+|+++||+++.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 9999999999999999999999999999999999952 345567899999999999999889999999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
+|++||||||+.|++++|+...|.+|++.++++.++. .++++..+| ..|.||+|+||.|+|++|+..|.++...
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a--~~t~gf~gadl~n~~neaa~~a~r~~~~--- 539 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA--SLTPGFSGADLANLCNEAALLAARKGLR--- 539 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH--hcCCCCcHHHHHhhhhHHHHHHHHhccC---
Confidence 9999999999999999999999999999999998885 678888888 7899999999999999999999998765
Q ss_pred CCCCCCCccccHHHHHHHHhhcC
Q 045279 659 SSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|+..||+.|++++.
T Consensus 540 --------~i~~~~~~~a~~Rvi 554 (774)
T KOG0731|consen 540 --------EIGTKDLEYAIERVI 554 (774)
T ss_pred --------ccchhhHHHHHHHHh
Confidence 799999999999553
No 26
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-42 Score=330.04 Aligned_cols=296 Identities=31% Similarity=0.506 Sum_probs=248.3
Q ss_pred hhhhcCCCCCCcccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHH
Q 045279 101 EESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 180 (702)
++..+...++.+.+..+++.++|+|+.|++.+|+.|+++|+.|+.+|++|.. +..|.+++||||||||||++||+++|.
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVAT 188 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVAT 188 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHh
Confidence 4445556677888899999999999999999999999999999999999885 355789999999999999999999999
Q ss_pred HhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 181 ETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 181 ~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
+.+..|+.|+.++|++.|.|++++.++.+|+.|+.+.|+||||||||.+++.++...++..+|+-++||.+|.+...
T Consensus 189 EAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~--- 265 (439)
T KOG0739|consen 189 EANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN--- 265 (439)
T ss_pred hcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc---
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999997543
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhh
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARS 339 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~ 339 (702)
....|+|+||||.||.||.+++| ||...|++|.|....|..+|+.++...... ...++..|++.
T Consensus 266 -------------d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~k 330 (439)
T KOG0739|consen 266 -------------DNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARK 330 (439)
T ss_pred -------------CCCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhh
Confidence 22349999999999999999999 999999999999999999999888776543 35689999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccc--------cccCc---ccccCCC---ChhhhhhhcccHhHHH
Q 045279 340 TPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIA--------EQHSD---DWWRQPW---LPEEMERLTITMTDFE 405 (702)
Q Consensus 340 t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~---~~~~~~~~~i~~~d~~ 405 (702)
|+||+|+|+.-+++.|.+..++++..........+... +-|.- ..+...| ..+.+-...+|+.||.
T Consensus 331 TeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~ 410 (439)
T KOG0739|consen 331 TEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFL 410 (439)
T ss_pred cCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHH
Confidence 99999999999999999999998876543322222110 01110 0000111 1223335679999999
Q ss_pred HHHhccCCCC
Q 045279 406 EATKMVQPSS 415 (702)
Q Consensus 406 ~~l~~~~p~~ 415 (702)
+++...+|..
T Consensus 411 k~l~~tkPTv 420 (439)
T KOG0739|consen 411 KSLSRTKPTV 420 (439)
T ss_pred HHHhhcCCCC
Confidence 9998877653
No 27
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.6e-40 Score=353.36 Aligned_cols=250 Identities=40% Similarity=0.661 Sum_probs=232.2
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|++.|++|+|++.+++.+.+.+..++.+++.|.++|+.+|+|+|||||||||||++|+++|+.++.+|+.+.++++.
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~ 216 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFV 216 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
.+|+|+++..++.+|..|+...|+||||||+|.+..+|.+.. .....+++.++|..|+++....+++||+|||+++.
T Consensus 217 ~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 217 QKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 999999999999999999999999999999999998774332 23557889999999999888889999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+||+++||||||..|+|++|+.++|..||+.++.+.++..+++++.++ ..++||+|+||+++|++|++.|+++...
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la--~~t~g~sgaDI~~l~~eA~~~A~r~~~~-- 372 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFV--SRPEKISAADIAAICQEAGMQAVRKNRY-- 372 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHcCCC--
Confidence 999999999999999999999999999999999999999899999999 6789999999999999999999988532
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCCC
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
.|+.+||.+|+.++...
T Consensus 373 ---------~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 373 ---------VILPKDFEKGYKTVVRK 389 (398)
T ss_pred ---------ccCHHHHHHHHHHHHhc
Confidence 79999999999998554
No 28
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-40 Score=356.06 Aligned_cols=268 Identities=39% Similarity=0.650 Sum_probs=237.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
-|+++|+||+|++++|.+|.+.+..|++||++|.. |+++..|||||||||||||.+|+|+|.++...|+.|.+.++..-
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 47889999999999999999999999999999986 88999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh--HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ--REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
|+|+++++++.+|+.|+...|||||+||+|+++++++..+ .+...|++.+||..||+++. ...
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~---------------~~s 809 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD---------------SSS 809 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC---------------CCC
Confidence 9999999999999999999999999999999999997754 46779999999999998753 012
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCC-HHHHHHHHHHhhcCcccCCcccHHHHHhhCC-CCCHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPD-ENARVQILSVLTRNLRVEGSFDLVKIARSTP-GFVGADLAALAN 353 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~-~~er~~Il~~~~~~~~~~~~~~~~~la~~t~-g~~~~dl~~l~~ 353 (702)
..|+||||||+|+.|||+|+||||||+.+++.+++ .+.+..||+.+.+++.++.++++..+|+.++ .|+|+|+.++|.
T Consensus 810 ~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCS 889 (953)
T KOG0736|consen 810 QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCS 889 (953)
T ss_pred CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHH
Confidence 34999999999999999999999999999999884 6778889999999999999999999998874 799999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
+|...|++|.+.......... ...+-..+.++++||.++.+.++|+..
T Consensus 890 dA~l~AikR~i~~ie~g~~~~---------------~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 890 DAMLAAIKRTIHDIESGTISE---------------EEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHHHHHHHHHHHHhhhccccc---------------cccCCceEEEEHHHHHHHHHhcCCccc
Confidence 999999999886543111100 111223578999999999999998764
No 29
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-40 Score=333.47 Aligned_cols=274 Identities=33% Similarity=0.569 Sum_probs=243.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcC-CCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFG-VDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
-.++|++|+|++.+++.+++.+..|+.++++|...+ +.+++|+|||||||||||.+|+++|++.+.+|+.+..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 367999999999999999999999999999997544 5789999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCC--cEEEEEecCCCCccCc
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRK--GVFVIGATNRPDVMDR 580 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~--~~~vI~atn~~~~ld~ 580 (702)
|.|++++.++.+|..|....|+||||||+|++.+.|+.+.+.....+-++++..+||+...+ +|+|++|||+|..+|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 99999999999999999999999999999999999977778888999999999999986554 5999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc--C
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS--K 658 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~--~ 658 (702)
|++| |+...+++++|+.++|.+|++.++++.++..++|+..+| ..|+||||.||+++|..|+..++++.+... .
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA--~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIA--QMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHH--HhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 9999 999999999999999999999999999999999999999 679999999999999999999999988764 1
Q ss_pred CC---------------CCCCCccccHHHHHHHHhhcCCCCCH--HHHHHHHHHHHHHhc
Q 045279 659 SS---------------SDVTPFTIKLTHFEQALSKISPSVSE--LQIQRYKTLSETFKA 701 (702)
Q Consensus 659 ~~---------------~~~~~~~i~~~d~~~al~~~~~~~~~--~~~~~~~~~~~~~~~ 701 (702)
.+ .......++++||.+|..++.++++. ..+...+.|...+++
T Consensus 323 ~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 323 LDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 00 01113679999999999988776443 233445666655544
No 30
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.1e-40 Score=312.47 Aligned_cols=243 Identities=34% Similarity=0.559 Sum_probs=219.2
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..+++++++++|+++.|+.++- |...++.|+.|.+ ..|+++|||||||||||++|+++|++.+.||+.+++.++++
T Consensus 114 ~~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRL-IMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhccccHhhhhchHHHHHHHHH-HHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3467899999999999988754 5566778887665 56899999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
.|+|+....++++|++|+...|||+||||+|++.-.|..+. .+...+++|.||++|||...+..|+.|++||+|+.||+
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDP 269 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCH
Confidence 99999999999999999999999999999999998776543 34557899999999999999999999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHH-HHHHHHHHHHHHHHhhcCC
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAA-MMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~-~~~~a~~~a~~~~~~~~~~ 659 (702)
++.+ ||...|+|.+|+.++|..|++.+++++++.-+.+++.++ ..+.|+||+||.. +++.|...|+.+..+
T Consensus 270 aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~--~~t~g~SgRdikekvlK~aLh~Ai~ed~e---- 341 (368)
T COG1223 270 AIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLA--AKTKGMSGRDIKEKVLKTALHRAIAEDRE---- 341 (368)
T ss_pred HHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHH--HHhCCCCchhHHHHHHHHHHHHHHHhchh----
Confidence 9988 999999999999999999999999999999999999999 6789999999985 777777888887665
Q ss_pred CCCCCCccccHHHHHHHHhhcCCC
Q 045279 660 SSDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
.|+.+|++.|+.+.++.
T Consensus 342 -------~v~~edie~al~k~r~~ 358 (368)
T COG1223 342 -------KVEREDIEKALKKERKR 358 (368)
T ss_pred -------hhhHHHHHHHHHhhccc
Confidence 69999999999986553
No 31
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=353.59 Aligned_cols=244 Identities=44% Similarity=0.742 Sum_probs=231.2
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
...++|.|+.|.+++|+.+.+ +...++.|..|..+|...|+|++|+||||||||.|||++|.+.+.||+.+++|+|+..
T Consensus 144 ~~~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 356899999999999999998 6678899999999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
|||-....+|.+|.+|+...|||+||||+|++...|+.+ ++...+..+|+||.+|||+..+..++||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999988643 45677889999999999999889999999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
+|++||||||+.|.++.||...|.+|++.++++.++..++++..+| ..|.||+|+|+.|++++|+..|.++...
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iA--r~tpGfsGAdL~nl~NEAal~aar~n~~---- 376 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIA--RGTPGFSGADLANLLNEAALLAARRNKK---- 376 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHh--hhCCCcccchHhhhHHHHHHHHHHhcCe----
Confidence 9999999999999999999999999999999999999999999999 6799999999999999999999998764
Q ss_pred CCCCCCccccHHHHHHHHhhc
Q 045279 660 SSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~ 680 (702)
.|++.||++|..++
T Consensus 377 -------~i~~~~i~ea~drv 390 (596)
T COG0465 377 -------EITMRDIEEAIDRV 390 (596)
T ss_pred -------eEeccchHHHHHHH
Confidence 79999999999987
No 32
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-39 Score=335.04 Aligned_cols=226 Identities=41% Similarity=0.632 Sum_probs=212.3
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...++|+|+-|.|++|++|.+.| ..++.|+.|.++|-+-|+||||+||||||||+|||++|.+.++||++.+++++-.-
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM 376 (752)
T ss_pred hcccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh
Confidence 44779999999999999999766 78999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
++|....+++.+|..|+..+||||||||||.+.+++........++.+++||..||++.. ...
T Consensus 377 ~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q-----------------NeG 439 (752)
T KOG0734|consen 377 FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ-----------------NEG 439 (752)
T ss_pred hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc-----------------CCc
Confidence 999999999999999999999999999999999988776555889999999999998865 223
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
|+||||||.|+.+|+||.||||||++|.+|.|+..-|.+||..++.+.....+++..-+|+-|+||+|+||.++++.|+.
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 045279 358 LAMK 361 (702)
Q Consensus 358 ~a~~ 361 (702)
.|..
T Consensus 520 kAa~ 523 (752)
T KOG0734|consen 520 KAAV 523 (752)
T ss_pred HHHh
Confidence 7754
No 33
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1e-38 Score=343.65 Aligned_cols=254 Identities=44% Similarity=0.709 Sum_probs=234.0
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
....|++.|++++|++..++.+.+.+..++.+++.|..+|..+++|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
..+|+|+++..++.+|..|+...|+||||||+|.+.+.|+... .....+.+.+++.++++.....+++||+|||+++
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 9999999999999999999999999999999999998876543 2345677888898999888778999999999999
Q ss_pred ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 577 ~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.+|++++||||||..|+||+|+.++|.+||+.++++..+..+.++..++ ..++||+|+||+++|++|++.|+++...
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la--~~t~g~sgadl~~l~~eA~~~a~~~~~~- 358 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELA--ELTEGASGADLKAICTEAGMFAIRDDRT- 358 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHcCCC-
Confidence 9999999999999999999999999999999999999888889999999 6789999999999999999999987432
Q ss_pred cCCCCCCCCccccHHHHHHHHhhcCCCCCH
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKISPSVSE 686 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 686 (702)
.|+.+||.+|+.+++++...
T Consensus 359 ----------~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 359 ----------EVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred ----------CcCHHHHHHHHHHHhccccc
Confidence 69999999999999886554
No 34
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.2e-38 Score=340.12 Aligned_cols=248 Identities=38% Similarity=0.628 Sum_probs=229.8
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|.++|++|+|++..++.+.+.+..++.+++.|..+|+.++.++|||||||||||++|+++|++++.+|+.+.++++.
T Consensus 175 ~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~ 254 (438)
T PTZ00361 175 DKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELI 254 (438)
T ss_pred ccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhh
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
++|+|+++..++.+|..|....|+||||||+|.+..+|... ......+.+.++|..|+++....++.||+|||+++.
T Consensus 255 ~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 255 QKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 99999999999999999999999999999999999877543 223456778889999999887788999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++||||||..|+|++|+.++|.+||+.++.++.+..+++++.++ ..++||+|+||+++|++|++.|+++...
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la--~~t~g~sgAdI~~i~~eA~~~Alr~~r~-- 410 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFI--MAKDELSGADIKAICTEAGLLALRERRM-- 410 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhcCC--
Confidence 999999999999999999999999999999999999998899999999 6789999999999999999999988643
Q ss_pred CCCCCCCCccccHHHHHHHHhhcC
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|+.+||.+|+.++.
T Consensus 411 ---------~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 411 ---------KVTQADFRKAKEKVL 425 (438)
T ss_pred ---------ccCHHHHHHHHHHHH
Confidence 799999999999874
No 35
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=6.2e-38 Score=364.93 Aligned_cols=471 Identities=20% Similarity=0.237 Sum_probs=314.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
-++++++|+++.+.++.+.+ ..+..++++|+||||||||++|+.+|+.+ +.+++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l-------------~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDIL-------------LRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHH-------------hcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 38999999999998888766 33456789999999999999999999986 25578888
Q ss_pred chhhhc--ccccccHHHHHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 191 ATEVVS--GVSGASEENIRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 191 ~~~l~~--~~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
.+.+.+ .+.|+++.+++.+|+.+.. ..++||||||||.+.+.+....... ..+.|+..+.
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d---~~n~Lkp~l~-------------- 313 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD---AANLLKPALA-------------- 313 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc---HHHHhhHHhh--------------
Confidence 888764 4889999999999999865 4678999999999987553211111 1122333332
Q ss_pred CCCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-----ccHHHHH
Q 045279 268 SDASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-----FDLVKIA 337 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-----~~~~~la 337 (702)
+|.+.+||||+..+ .+||+|.| || ..|.++.|+.+++..||+.+.+.+..++. ..+..++
T Consensus 314 -------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~ 383 (852)
T TIGR03345 314 -------RGELRTIAATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAV 383 (852)
T ss_pred -------CCCeEEEEecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH
Confidence 46699999998743 69999999 99 57999999999999999887766554333 2355666
Q ss_pred hhCCCCCH-----HHHHHHHHHHHHHHH-H------------HHHHhh---hhccccCcc---ccc--------------
Q 045279 338 RSTPGFVG-----ADLAALANKAGNLAM-K------------RIIDQR---KSELSGNSI---AEQ-------------- 379 (702)
Q Consensus 338 ~~t~g~~~-----~dl~~l~~~a~~~a~-~------------r~~~~~---~~~~~~~~~---~~~-------------- 379 (702)
..+.+|.. .-.-.++++|+.... . +-+... ......+.. ...
T Consensus 384 ~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (852)
T TIGR03345 384 ELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALE 463 (852)
T ss_pred HHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHH
Confidence 77766643 334455666543221 1 000000 000000000 000
Q ss_pred -----cCcccccCCC--------------------Ch---------------------hhhhhhcccHhHHHHHHhccCC
Q 045279 380 -----HSDDWWRQPW--------------------LP---------------------EEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 380 -----~~~~~~~~~~--------------------~~---------------------~~~~~~~i~~~d~~~~l~~~~p 413 (702)
-...|..... .. .......++..|+...+..|+.
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tg 543 (852)
T TIGR03345 464 AELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTG 543 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHC
Confidence 0000000000 00 0000123667777777776653
Q ss_pred CCcCcc-------ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCC---CCc-ceEEEcCCCCChhHHHHH
Q 045279 414 SSRREG-------FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVD---LET-GFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 414 ~~~~~~-------~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~---~~~-~~ll~Gp~GtGKT~la~~ 482 (702)
-..... ...+....-..+.|++.....+.+.+... +.|+. .|. .+||+||||||||.+|++
T Consensus 544 ip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~ 615 (852)
T TIGR03345 544 IPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALA 615 (852)
T ss_pred CCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHH
Confidence 221110 11111223356888888888887776543 22221 233 489999999999999999
Q ss_pred HHHHh---CCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHH
Q 045279 483 VANEA---GANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVE 547 (702)
Q Consensus 483 la~~~---~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~ 547 (702)
+|..+ ...++.++++++... |+|..+.. .+...++.++++||+|||++.+. .
T Consensus 616 La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDEieka~-----------~ 682 (852)
T TIGR03345 616 LAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDEVEKAH-----------P 682 (852)
T ss_pred HHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEechhhcC-----------H
Confidence 99988 458899999877532 66664433 35566677889999999999988 7
Q ss_pred HHHHHHHHhhhCCC---------CCCcEEEEEecCCC-----------------------------CccCccccCCCccc
Q 045279 548 RLLNQLLIELDGAD---------KRKGVFVIGATNRP-----------------------------DVMDRAVLRPGRFG 589 (702)
Q Consensus 548 ~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-----------------------------~~ld~a~~r~gRf~ 589 (702)
.+++.|++.++... ...+++||+|||.. ..+.|+|++ |++
T Consensus 683 ~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~ 760 (852)
T TIGR03345 683 DVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT 760 (852)
T ss_pred HHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee
Confidence 88889998887532 23678999999952 125677777 997
Q ss_pred eEEEcCCCCHHHHHHHHHHHhccC--------CCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 590 KLLYVPLPTPDERGLILEALARKK--------PID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 590 ~~i~~~~p~~~~r~~il~~~~~~~--------~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
+|.|.+++.++..+|+...+... ++. .+.-++.|+...+...|.++.|+++|+.-...++.+.+.
T Consensus 761 -iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~l 836 (852)
T TIGR03345 761 -VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQIL 836 (852)
T ss_pred -EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998866541 221 222356677655555678999999999988888887654
No 36
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=8e-38 Score=366.50 Aligned_cols=470 Identities=20% Similarity=0.274 Sum_probs=320.0
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
.++.++|.++.++++.+.+ ..+.+++++|+||||||||++|+.+|..+ +.+++.++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L-------------~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 177 NLDPVIGREKEIERVIQIL-------------GRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred CCCCCCCcHHHHHHHHHHH-------------cccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 6899999999999999877 44567899999999999999999999986 368999999
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
+.+.. .|.|+++.+++.+|+.+....++||||||||.+.+.+..........+ |...+.
T Consensus 244 ~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~l---Lkp~l~---------------- 304 (821)
T CHL00095 244 GLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANI---LKPALA---------------- 304 (821)
T ss_pred HHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHH---hHHHHh----------------
Confidence 98875 478999999999999998778899999999999876543222211222 222222
Q ss_pred CCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc----cC-CcccHHHHHhh
Q 045279 270 ASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR----VE-GSFDLVKIARS 339 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~----~~-~~~~~~~la~~ 339 (702)
+|.+.+||+|+..+ ..||++.+ || ..|.++.|+.++...|++.....+. +. .+..+..++..
T Consensus 305 -----rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~l 376 (821)
T CHL00095 305 -----RGELQCIGATTLDEYRKHIEKDPALER--RF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKL 376 (821)
T ss_pred -----CCCcEEEEeCCHHHHHHHHhcCHHHHh--cc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46699999999864 68999999 99 5689999999999999987654332 22 12234555565
Q ss_pred CCCCCH-----HHHHHHHHHHHHHHHHH---------HHHhhhhc-------c-ccCccccc----------------cC
Q 045279 340 TPGFVG-----ADLAALANKAGNLAMKR---------IIDQRKSE-------L-SGNSIAEQ----------------HS 381 (702)
Q Consensus 340 t~g~~~-----~dl~~l~~~a~~~a~~r---------~~~~~~~~-------~-~~~~~~~~----------------~~ 381 (702)
+.+|.+ .-.-.++++|+....-. .+.+.... . ........ ..
T Consensus 377 s~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (821)
T CHL00095 377 SDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAII 456 (821)
T ss_pred hhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 655543 33445556554422110 00000000 0 00000000 00
Q ss_pred cccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcc-------ccccCCccccccCCcccchhhhHHHHHHHhhChHH
Q 045279 382 DDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG-------FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEE 454 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~-------~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~ 454 (702)
..|.... . .......++.+|+..++..++.-..... ...+....-+.+.|++.++..+..++...
T Consensus 457 ~~~~~~~-~-~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~------ 528 (821)
T CHL00095 457 QSKKTEE-E-KRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA------ 528 (821)
T ss_pred HHHHhhh-c-ccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH------
Confidence 0000000 0 0011245888899888888764322111 11111223356889999988887777543
Q ss_pred HHHcCC----CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc------------cCcCchHHHHHHHH
Q 045279 455 YEEFGV----DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN------------KYVGESELAVRTLF 515 (702)
Q Consensus 455 ~~~~~~----~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~------------~~~g~~~~~~~~~f 515 (702)
+.|+ +|...+||+||||||||++|+++|+.+ +.+++.++++++.. .|+|..+.. .+.
T Consensus 529 --~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~--~l~ 604 (821)
T CHL00095 529 --RVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGG--QLT 604 (821)
T ss_pred --hhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccc--hHH
Confidence 2222 233458999999999999999999987 46899999888743 255544432 466
Q ss_pred HHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCCC----------
Q 045279 516 SRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRPD---------- 576 (702)
Q Consensus 516 ~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~~---------- 576 (702)
..++..+.+||+|||+|.+. .++++.|++.|+... ...+++||+|||...
T Consensus 605 ~~~~~~p~~VvllDeieka~-----------~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~ 673 (821)
T CHL00095 605 EAVRKKPYTVVLFDEIEKAH-----------PDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGL 673 (821)
T ss_pred HHHHhCCCeEEEECChhhCC-----------HHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhcccc
Confidence 77777788999999999998 889999999998631 346899999998531
Q ss_pred ---------------------------ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-------CCCC---CCC
Q 045279 577 ---------------------------VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-------KPID---DSV 619 (702)
Q Consensus 577 ---------------------------~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~---~~~ 619 (702)
.+.|.|++ |+|.+|.|.+++.++..+|++..+.+ .++. .+.
T Consensus 674 gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~ 751 (821)
T CHL00095 674 GFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTER 751 (821)
T ss_pred CCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHH
Confidence 13356666 99999999999999999998877664 2221 122
Q ss_pred CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 620 DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 620 ~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
..+.++...+...|.++.|+++++.-...++.+.+..
T Consensus 752 ~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~l~ 788 (821)
T CHL00095 752 IKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEVLS 788 (821)
T ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHh
Confidence 3566776555667889999999999988888877653
No 37
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-37 Score=292.59 Aligned_cols=229 Identities=40% Similarity=0.648 Sum_probs=214.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+++.+++.||+|++-.|+++++.+..|+.+.+++++.|+.|++|||+|||||||||+|++++|+.....|+.+.+++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH---HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR---EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|.|+....++.+|..|+.+.|+|+||||||.++.++-..+. ....+++-+|+.+||++..
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq---------------- 291 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ---------------- 291 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc----------------
Confidence 999999999999999999999999999999999987755443 3446778888999998764
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..+|-||.+||+.+.+||+++||||+++.|+||.|+..++.-+|..+..++.+...+++..+....+..+++|+.++|.
T Consensus 292 -~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicq 370 (408)
T KOG0727|consen 292 -TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQ 370 (408)
T ss_pred -ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHH
Confidence 3459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 354 KAGNLAMKR 362 (702)
Q Consensus 354 ~a~~~a~~r 362 (702)
+|.+.+++.
T Consensus 371 eagm~avr~ 379 (408)
T KOG0727|consen 371 EAGMLAVRE 379 (408)
T ss_pred HHhHHHHHh
Confidence 999998774
No 38
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=3.4e-36 Score=351.70 Aligned_cols=472 Identities=21% Similarity=0.291 Sum_probs=311.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
++++++|.++.++++.+.+ ..+..++++|+||||||||++|+++|..+ +.+++.++.
T Consensus 176 ~l~~vigr~~ei~~~i~iL-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l 242 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 242 (857)
T ss_pred CCCcCCCCHHHHHHHHHHH-------------hcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEeh
Confidence 7999999999999998776 34566889999999999999999999987 678899999
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+..+ +.|+++.+++.+|..+.. ..++||||||+|.+.+.+..........+ |...+.
T Consensus 243 ~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~---lkp~l~--------------- 304 (857)
T PRK10865 243 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNM---LKPALA--------------- 304 (857)
T ss_pred hhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHH---hcchhh---------------
Confidence 988744 789999999999998654 46789999999999876543222222222 222222
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-----HHHHHh
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-----LVKIAR 338 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-----~~~la~ 338 (702)
+|.+.+||||+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+...+...+.+. +...+.
T Consensus 305 ------~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ 375 (857)
T PRK10865 305 ------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAAT 375 (857)
T ss_pred ------cCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHH
Confidence 46699999999976 58999999 995 688999999999999998887766554322 333334
Q ss_pred hCCCCC-----HHHHHHHHHHHHHHH-------------HHHHHHhhhhc---cccC-ccc---------c---cc----
Q 045279 339 STPGFV-----GADLAALANKAGNLA-------------MKRIIDQRKSE---LSGN-SIA---------E---QH---- 380 (702)
Q Consensus 339 ~t~g~~-----~~dl~~l~~~a~~~a-------------~~r~~~~~~~~---~~~~-~~~---------~---~~---- 380 (702)
.+..|. +.....+++.++... ..+.+...... ...+ ... . ..
T Consensus 376 ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~ 455 (857)
T PRK10865 376 LSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQY 455 (857)
T ss_pred HhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444432 333344555443221 11111000000 0000 000 0 00
Q ss_pred --C-cccccCC--------------------------------------CChh----------------hhhhhcccHhH
Q 045279 381 --S-DDWWRQP--------------------------------------WLPE----------------EMERLTITMTD 403 (702)
Q Consensus 381 --~-~~~~~~~--------------------------------------~~~~----------------~~~~~~i~~~d 403 (702)
. .+|.... ..+. ..-...++.+|
T Consensus 456 ~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 535 (857)
T PRK10865 456 SELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAE 535 (857)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHH
Confidence 0 0000000 0000 00012366777
Q ss_pred HHHHHhccCCCCcCc-------cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEcCC
Q 045279 404 FEEATKMVQPSSRRE-------GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYGPP 472 (702)
Q Consensus 404 ~~~~l~~~~p~~~~~-------~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~Gp~ 472 (702)
+..++..|+.-.... ....+.......+.|++.+...+...+... +.|+ +|...++|+|||
T Consensus 536 i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~ 607 (857)
T PRK10865 536 IAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--------RAGLSDPNRPIGSFLFLGPT 607 (857)
T ss_pred HHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEECCC
Confidence 777777766332211 111122334556888888888777766543 2222 222468999999
Q ss_pred CCChhHHHHHHHHHh---CCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 473 GCGKTLIAKAVANEA---GANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 473 GtGKT~la~~la~~~---~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
|||||++|+++|..+ +.+++.++++++... |+|..+.. .+....+..+.+||||||++.+.
T Consensus 608 G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g--~l~~~v~~~p~~vLllDEieka~-- 683 (857)
T PRK10865 608 GVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGG--YLTEAVRRRPYSVILLDEVEKAH-- 683 (857)
T ss_pred CCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhH--HHHHHHHhCCCCeEEEeehhhCC--
Confidence 999999999999977 457999998876532 33432222 23344455667999999999988
Q ss_pred cCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCC-------------------------CccCcccc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRP-------------------------DVMDRAVL 583 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~-------------------------~~ld~a~~ 583 (702)
..+++.|++.|+.. ....+++||+|||.. ..+.|+|+
T Consensus 684 ---------~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELl 754 (857)
T PRK10865 684 ---------PDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFI 754 (857)
T ss_pred ---------HHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHH
Confidence 78899999988642 124567899999972 13557787
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHHHhccC-------CCCC---CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEALARKK-------PIDD---SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~~~---~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~ 653 (702)
+ |+|.++.|.+++.+....|++.++.+. +... +.-++.|+...+...|.++.|+++|+.-+...+.+.
T Consensus 755 n--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 755 N--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred H--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 7 999999999999999999988876542 2221 223456665555556778999999999998888877
Q ss_pred Hhh
Q 045279 654 LIS 656 (702)
Q Consensus 654 ~~~ 656 (702)
+..
T Consensus 833 iL~ 835 (857)
T PRK10865 833 ILS 835 (857)
T ss_pred HHc
Confidence 653
No 39
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-38 Score=326.85 Aligned_cols=277 Identities=36% Similarity=0.614 Sum_probs=249.4
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...+++.|+++.|++.+|+.+.+.+.+++..+..|..+ ..+.+++||.||||+|||+|++++|.+.+..|+.++++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 34567899999999999999999999999999999864 35678999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC--CCCCcEEEEEecCCCCcc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA--DKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~vI~atn~~~~l 578 (702)
++|+|+++..++.+|.-|+...|+|+||||+|++..+|.+......+++..++|.++++. ...++|+||+|||+|+.+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 999999999999999999999999999999999999998888888899999999999986 355689999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh-
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS- 656 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~- 656 (702)
|.+++| ||.+++++|+|+.+.|..+|+.++.+.+.. .+.+++.++ ..|+||+|+||.++|++|++..++.....
T Consensus 304 Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~--~~Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 304 DEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLA--KVTEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHH--HHhcCcccccHHHHHHHhhcCchhhcccch
Confidence 999999 999999999999999999999999987433 457888888 78999999999999999999888776542
Q ss_pred -cCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Q 045279 657 -SKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 702 (702)
Q Consensus 657 -~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 702 (702)
.........+.|+..||..|+..++|+++...++.|+.|...|++.
T Consensus 380 ~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~ 426 (428)
T KOG0740|consen 380 DLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSS 426 (428)
T ss_pred hhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhccc
Confidence 2222334456899999999999999999999999999999999863
No 40
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-37 Score=310.97 Aligned_cols=233 Identities=37% Similarity=0.608 Sum_probs=217.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
.-.++|+||+|++.+|+++.+.|..|+++|++|..-+ ++++.||||+||||||||++|+++|++.+..|+.|..+.+++
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 4467999999999999999999999999999996433 568999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
.|+|+.++.++.+|..|.+-.|+||||||+|+++..++..+.+..+.+-++|+..+|++.. ....
T Consensus 166 KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s---------------~~~~ 230 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS---------------KDSE 230 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC---------------CCCc
Confidence 9999999999999999999999999999999999999878889999999999999997653 1223
Q ss_pred eEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 277 YVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 277 ~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.|+|+||||+|.++|.|+.| |++++++++.|+..+|..||+.+++...++.++++..+|+.|.||+|+||..+|..|.
T Consensus 231 rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa 308 (386)
T KOG0737|consen 231 RVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAA 308 (386)
T ss_pred eEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHh
Confidence 59999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 045279 357 NLAMKRIIDQR 367 (702)
Q Consensus 357 ~~a~~r~~~~~ 367 (702)
...++.++...
T Consensus 309 ~~~ire~~~~~ 319 (386)
T KOG0737|consen 309 LRPIRELLVSE 319 (386)
T ss_pred HhHHHHHHHhc
Confidence 99999988775
No 41
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.1e-36 Score=355.44 Aligned_cols=473 Identities=21% Similarity=0.301 Sum_probs=316.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
+++.++|.++.++++.+.+ ..+..++++|+||||||||++++++|..+ +.+++.++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~ 237 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVL-------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM 237 (852)
T ss_pred CCCcCCCcHHHHHHHHHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH
Confidence 7899999999999998766 34566889999999999999999999986 567888988
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.+.. .|.|+.+..++.+|..+... .+.||||||||.+.+.+...... ...+.|...+
T Consensus 238 ~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~---d~~~~Lk~~l---------------- 298 (852)
T TIGR03346 238 GALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM---DAGNMLKPAL---------------- 298 (852)
T ss_pred HHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh---HHHHHhchhh----------------
Confidence 88864 47899999999999988653 58899999999998644322111 1222222222
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-----cHHHHHh
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-----DLVKIAR 338 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-----~~~~la~ 338 (702)
..|.+.+||+|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+...+.. .+...+.
T Consensus 299 -----~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ 370 (852)
T TIGR03346 299 -----ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAAT 370 (852)
T ss_pred -----hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHH
Confidence 146699999999864 58999999 994 68999999999999999888777665543 3445566
Q ss_pred hCCCCC-----HHHHHHHHHHHHHHHHH-------------HHHHhhh---hccccC--ccc---------------c--
Q 045279 339 STPGFV-----GADLAALANKAGNLAMK-------------RIIDQRK---SELSGN--SIA---------------E-- 378 (702)
Q Consensus 339 ~t~g~~-----~~dl~~l~~~a~~~a~~-------------r~~~~~~---~~~~~~--~~~---------------~-- 378 (702)
.+.+|. +.-.-.++++|+....- +-+.... ...... ... .
T Consensus 371 ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (852)
T TIGR03346 371 LSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEY 450 (852)
T ss_pred hccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 665553 33445566666543211 0000000 000000 000 0
Q ss_pred cc-CcccccCC--------------------------------------CCh------------------hhhhhhcccH
Q 045279 379 QH-SDDWWRQP--------------------------------------WLP------------------EEMERLTITM 401 (702)
Q Consensus 379 ~~-~~~~~~~~--------------------------------------~~~------------------~~~~~~~i~~ 401 (702)
.. ...|.... ..+ +......++.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 530 (852)
T TIGR03346 451 ADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTA 530 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCH
Confidence 00 00000000 000 0001124677
Q ss_pred hHHHHHHhccCCCCcCc-------cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEc
Q 045279 402 TDFEEATKMVQPSSRRE-------GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYG 470 (702)
Q Consensus 402 ~d~~~~l~~~~p~~~~~-------~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~G 470 (702)
+|+..++..+....... ....+.......+.|++.+...+...+... +.|+ +|...++|+|
T Consensus 531 ~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~G 602 (852)
T TIGR03346 531 EEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLG 602 (852)
T ss_pred HHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEc
Confidence 77777777664322111 011112224466889998888887776553 2222 3445689999
Q ss_pred CCCCChhHHHHHHHHHh---CCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 471 PPGCGKTLIAKAVANEA---GANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 471 p~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
|||||||++|+++|..+ +.+++.++++++... |+|..+. ..+...++..+.+||||||++.+.
T Consensus 603 p~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~--g~l~~~v~~~p~~vlllDeieka~ 680 (852)
T TIGR03346 603 PTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEG--GQLTEAVRRKPYSVVLFDEVEKAH 680 (852)
T ss_pred CCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccc--cHHHHHHHcCCCcEEEEeccccCC
Confidence 99999999999999987 568999999876432 3444332 245555666778899999999998
Q ss_pred cccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCCC-------------------------ccCcc
Q 045279 536 TKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRPD-------------------------VMDRA 581 (702)
Q Consensus 536 ~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~~-------------------------~ld~a 581 (702)
..+++.|++.|+.. ....+++||+|||... .+.|.
T Consensus 681 -----------~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pe 749 (852)
T TIGR03346 681 -----------PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPE 749 (852)
T ss_pred -----------HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHH
Confidence 88999999988753 1246789999999721 24466
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhcc-------CCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARK-------KPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~ 651 (702)
|+. |+|.++.|.+++.++..+|+...+.. .++. .+..++.|+...+...|+.+.|++++++.+...+.
T Consensus 750 l~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 750 FLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred Hhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHH
Confidence 766 99999999999999999998876542 2111 12234566655445567889999999999998888
Q ss_pred HHHhhc
Q 045279 652 DKLISS 657 (702)
Q Consensus 652 ~~~~~~ 657 (702)
+.+...
T Consensus 828 ~~~l~~ 833 (852)
T TIGR03346 828 KKILAG 833 (852)
T ss_pred HHHHhC
Confidence 876543
No 42
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-37 Score=291.15 Aligned_cols=245 Identities=38% Similarity=0.627 Sum_probs=222.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
-+..+++-++|++..++++.+.+..|.+||++|..+|+..+.++|||||||||||.||+++|....+.|+.+++++++..
T Consensus 141 vPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk 220 (404)
T KOG0728|consen 141 VPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK 220 (404)
T ss_pred CCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
|.|+....++++|-.|+..+|+|+|+||||++.+.+.... +....+..-+|+.++|++..
T Consensus 221 ~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea----------------- 283 (404)
T KOG0728|consen 221 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA----------------- 283 (404)
T ss_pred HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc-----------------
Confidence 9999999999999999999999999999999998764432 23335556677888887653
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
..++-||.|||+.+-+||+++||||+++.|+||+|+++.|.+|++.+-+++.+....++..+|...+|.+|+++..+|.+
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhcc
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~ 411 (702)
|.+.+.+.- +..+|.+||+-+...+
T Consensus 364 agm~alrer--------------------------------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 364 AGMYALRER--------------------------------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred hhHHHHHHh--------------------------------hccccHHHHHHHHHHH
Confidence 999887641 2568889998887654
No 43
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-38 Score=307.35 Aligned_cols=245 Identities=38% Similarity=0.627 Sum_probs=228.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+++|+.++|+-.....+.+.+..++..+.+|.++|+.+|.+++||||||||||.+|+++|..++++|+.+.++.+.++|.
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyi 207 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYI 207 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcc
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRA 581 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a 581 (702)
|++.+.+|+.|..|+...|||||+||||+..++|.... +....+.+-+|+.+|+++....+|-+|+|||+|+.|||+
T Consensus 208 GEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 208 GESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred ccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 99999999999999999999999999999999885543 345567777788899999999999999999999999999
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSS 661 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~ 661 (702)
++||||+|+.+.+|+|+...|..|++.+........+.+.+.+. .+.++|+|+|++++|.+|.+.|+++...
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaiv--K~~d~f~gad~rn~~tEag~Fa~~~~~~------ 359 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAIL--KLVDGFNGADLRNVCTEAGMFAIPEERD------ 359 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHH--HHHhccChHHHhhhcccccccccchhhH------
Confidence 99999999999999999999999999999998888899988888 7889999999999999999999988654
Q ss_pred CCCCccccHHHHHHHHhhcCC
Q 045279 662 DVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 662 ~~~~~~i~~~d~~~al~~~~~ 682 (702)
.+-++||..+..++..
T Consensus 360 -----~vl~Ed~~k~vrk~~~ 375 (388)
T KOG0651|consen 360 -----EVLHEDFMKLVRKQAD 375 (388)
T ss_pred -----HHhHHHHHHHHHHHHH
Confidence 6888999999988765
No 44
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-37 Score=344.11 Aligned_cols=389 Identities=32% Similarity=0.496 Sum_probs=301.2
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEec
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISA 191 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~ 191 (702)
....+.|++|+|++.++.+|++.|..|+.+|+.|..+++.++++|||+||||||||..|+++|..+ +..|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 356779999999999999999999999999999999999999999999999999999999999887 356778888
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
++..+.|+|+.+.+++.+|+.|+...|+|+|+||||-+++.+...+......++..||..|+++..
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGlds-------------- 403 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDS-------------- 403 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCC--------------
Confidence 999999999999999999999999999999999999999999888888889999999999998764
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAA 350 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~ 350 (702)
+|.|+||||||+++.+||+++|||||++.++|+.|+.++|.+|+.....++..... ..+..+|..+.||.|+||+.
T Consensus 404 ---RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlka 480 (1080)
T KOG0732|consen 404 ---RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKA 480 (1080)
T ss_pred ---CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHH
Confidence 78899999999999999999999999999999999999999999998888773332 34677999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCcc-ccccCCcccc
Q 045279 351 LANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREG-FSAIPNVKWE 429 (702)
Q Consensus 351 l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~-~~~~~~~~~~ 429 (702)
+|.+|+..++++-..+.......-. .....+.+...+|..++....|+..+.. ....|.-..-
T Consensus 481 LCTeAal~~~~r~~Pq~y~s~~kl~----------------~d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~ 544 (1080)
T KOG0732|consen 481 LCTEAALIALRRSFPQIYSSSDKLL----------------IDVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYL 544 (1080)
T ss_pred HHHHHhhhhhccccCeeeccccccc----------------ccchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcce
Confidence 9999999998875544331111111 1122344788899999998888776642 2222211111
Q ss_pred c-cCCcccchhhhH-------------HHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-CCeEEEE
Q 045279 430 D-VGGLDYLRHEFD-------------RYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-GANFIHI 494 (702)
Q Consensus 430 ~-i~g~~~~k~~l~-------------~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-~~~~~~i 494 (702)
. +.+.......++ +...+.++..+..-...+--...+++.|..|.|-+.+..++-+.+ +.++...
T Consensus 545 ~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~ 624 (1080)
T KOG0732|consen 545 KPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSL 624 (1080)
T ss_pred ecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHH
Confidence 1 111111111111 111111111111000011112347888999999999999998876 5666666
Q ss_pred ecccccccC-cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 495 KGPELLNKY-VGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 495 ~~~~l~~~~-~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
..+.++..- .+..+..+..+|..|+...||||||-.+|......
T Consensus 625 ~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 625 DISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVFIPNVDEWARVI 669 (1080)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHhccCCceeeccchhhhhhcC
Confidence 666665543 45677788899999999999999999999877443
No 45
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.2e-36 Score=335.66 Aligned_cols=246 Identities=42% Similarity=0.713 Sum_probs=225.1
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..|.++|++++|++.+|..+.+.+.. +++++.|.+.|..+++|+||+||||||||++|+++|.+++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 35688999999999999999986654 89999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
.|+|.++..++.+|..|+...|+||||||+|.+..+|+.. ......+++++||.+|+++....+++||+|||+++.+
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 9999999999999999999999999999999999888653 2345578999999999999888899999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
|++++||||||..|++++|+.++|.+|++.++++.+...+.++..++ ..+.||+|+||+++|++|+..|.++..
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la--~~t~G~sgadl~~l~~eA~~~a~~~~~---- 280 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVA--RRTPGFSGADLANLLNEAALLAARKNK---- 280 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 99999999999999999999999999999999988877788899999 678999999999999999988776532
Q ss_pred CCCCCCCccccHHHHHHHHhhcC
Q 045279 659 SSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
..|+.+||+.|+.++.
T Consensus 281 -------~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 281 -------TEITMNDIEEAIDRVI 296 (495)
T ss_pred -------CCCCHHHHHHHHHHHh
Confidence 2699999999999874
No 46
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-37 Score=297.34 Aligned_cols=246 Identities=39% Similarity=0.651 Sum_probs=222.5
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..++.||+|++..++++.+.+..|+.||++|+..|++++.+|+|||+||||||.||+++|+.....|+.+-+++++..
T Consensus 179 aP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk 258 (440)
T KOG0726|consen 179 APQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK 258 (440)
T ss_pred CchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH
Confidence 56669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHH---HHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVT---QLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~---~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
|.|.....++.+|..|..++|+|+||||||.+...+-+..+...+.+.. .||+++|++. .
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd-----------------s 321 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------------S 321 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc-----------------c
Confidence 9999999999999999999999999999999998886655555554444 4555555543 2
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
++.|-||.|||..+.+||+|.||||+++.|.|+.|++..+..||..+..++.+..++++..+......++|+||.++|.+
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
|..+|.+.- +..++.+||.++.+.+.
T Consensus 402 aGllAlRer--------------------------------Rm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 402 AGLLALRER--------------------------------RMKVTMEDFKKAKEKVL 427 (440)
T ss_pred HhHHHHHHH--------------------------------HhhccHHHHHHHHHHHH
Confidence 999987741 24678999998887653
No 47
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-36 Score=323.13 Aligned_cols=234 Identities=41% Similarity=0.665 Sum_probs=222.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
..++.|.||+|+.++|+.+.+.+.+|.++|.+|...+++.+.|||||||||||||.||.++|...+..|+.+.+.++.+.
T Consensus 661 ~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K 740 (952)
T KOG0735|consen 661 STGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK 740 (952)
T ss_pred cCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
|.|++++.++.+|..|....|||||+||+|+++++++....+...|++++||++||+...+ .|
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl----------------~G- 803 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL----------------DG- 803 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc----------------ce-
Confidence 9999999999999999999999999999999999999988899999999999999987652 22
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
|.|+|||.+|+.|||||+||||+++.++.+.|+..+|.+|++.+........+.++..+|..|+||+|+||..++-.|..
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l 883 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQL 883 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 045279 358 LAMKRIIDQRK 368 (702)
Q Consensus 358 ~a~~r~~~~~~ 368 (702)
.++.+++.+..
T Consensus 884 ~avh~~l~~~~ 894 (952)
T KOG0735|consen 884 AAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhcC
Confidence 99998887643
No 48
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-37 Score=316.86 Aligned_cols=268 Identities=36% Similarity=0.628 Sum_probs=230.7
Q ss_pred CCccccc--cCCcccc-hhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC-eEEEEecccc
Q 045279 424 PNVKWED--VGGLDYL-RHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-NFIHIKGPEL 499 (702)
Q Consensus 424 ~~~~~~~--i~g~~~~-k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-~~~~i~~~~l 499 (702)
|+-.|++ |||++.- -..+++++...+.-|+...++|.+..+|+|||||||||||.+||.+...++. .--.++++++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 4555665 6788754 3445677888888999999999999999999999999999999999999854 4467899999
Q ss_pred cccCcCchHHHHHHHHHHHHh--------CCCeEEEEeCcchhhcccCCCC--chHHHHHHHHHHHhhhCCCCCCcEEEE
Q 045279 500 LNKYVGESELAVRTLFSRART--------CSPCILFFDEVDALTTKRGKEG--GWVVERLLNQLLIELDGADKRKGVFVI 569 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~--------~~~~vl~iDEid~l~~~r~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~vI 569 (702)
+++|||++|.++|.+|+.|.. ..-.||+|||||+++..|+... .++.+.++|+||..|||...-.+++||
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVI 373 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVI 373 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEE
Confidence 999999999999999998853 2335999999999999998653 457799999999999999999999999
Q ss_pred EecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC----CCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 570 GATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK----PIDDSVDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 570 ~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
+.||+.+.||.|++|||||....++.+||+..|.+|++.+.+++ .++.++|+++|| ..|.+|||++|..+++.|
T Consensus 374 GMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA--~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 374 GMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELA--ALTKNFSGAELEGLVKSA 451 (744)
T ss_pred eccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHH--HHhcCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999887764 456789999999 789999999999999999
Q ss_pred HHHHHHHHHhhcC----CCCCCCCccccHHHHHHHHhhcCCC--CCHHHHHHHH
Q 045279 646 AMAALEDKLISSK----SSSDVTPFTIKLTHFEQALSKISPS--VSELQIQRYK 693 (702)
Q Consensus 646 ~~~a~~~~~~~~~----~~~~~~~~~i~~~d~~~al~~~~~~--~~~~~~~~~~ 693 (702)
...|+.+...... .........|+++||..||..++|+ +++++++.|.
T Consensus 452 ~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 452 QSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 9999999886542 1223345689999999999999997 5666666554
No 49
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=287.54 Aligned_cols=229 Identities=38% Similarity=0.641 Sum_probs=209.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+++..++.||+|+++.+++|.+.+..|+.|++.|..+|++++.++|+|||||||||.+||+.|...+..|..+.+..++.
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 36666899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
-|.|...+.++..|..|+...|+||||||+|.+..++-... +....+..-.||.++|+++.
T Consensus 244 MfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss---------------- 307 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS---------------- 307 (424)
T ss_pred hhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC----------------
Confidence 99999999999999999999999999999999987764432 22234445567777776643
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
...|-||++||+.+-+||+++|.||+++.|+||.|+.+.|.+|++.+.+++.+..++++.++++.|++|+|++++++|-
T Consensus 308 -~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 308 -DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred -ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeeh
Confidence 4559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 354 KAGNLAMKR 362 (702)
Q Consensus 354 ~a~~~a~~r 362 (702)
+|.+.+.++
T Consensus 387 EAGMiALRr 395 (424)
T KOG0652|consen 387 EAGMIALRR 395 (424)
T ss_pred hhhHHHHhc
Confidence 999999886
No 50
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.7e-36 Score=329.59 Aligned_cols=227 Identities=46% Similarity=0.709 Sum_probs=209.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
..+++|+|+.|.+++|++|.|.| ..+++|+.|..+|++.++|+||+||||||||.||+++|.+.++||+.+++++++..
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 45689999999999999999876 88999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchh----hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN----LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
+.|....+++.+|..|+...|||+||||||.+...++. ..+......+++|+..||+...
T Consensus 384 ~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~---------------- 447 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET---------------- 447 (774)
T ss_pred hcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC----------------
Confidence 99999999999999999999999999999999988842 2345556778999999998653
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
.+.|+|+|+||+++.+|++++||||||+.|.++.|+...|.+|++.+++...+. ...++..+|..|+||+|+||.++|
T Consensus 448 -~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 448 -SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred -CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 245999999999999999999999999999999999999999999999998885 566788899999999999999999
Q ss_pred HHHHHHHHHH
Q 045279 353 NKAGNLAMKR 362 (702)
Q Consensus 353 ~~a~~~a~~r 362 (702)
++|+..+.++
T Consensus 527 neaa~~a~r~ 536 (774)
T KOG0731|consen 527 NEAALLAARK 536 (774)
T ss_pred hHHHHHHHHh
Confidence 9999988775
No 51
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3e-35 Score=319.55 Aligned_cols=253 Identities=39% Similarity=0.656 Sum_probs=216.1
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe----------
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN---------- 490 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~---------- 490 (702)
...|+++|++|+|++..++.+.+.+..++.+++.|..+|+.+++|+|||||||||||++|+++|+.++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 4568899999999999999999999999999999999999999999999999999999999999998543
Q ss_pred EEEEecccccccCcCchHHHHHHHHHHHHhC----CCeEEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCCCCc
Q 045279 491 FIHIKGPELLNKYVGESELAVRTLFSRARTC----SPCILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKG 565 (702)
Q Consensus 491 ~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~ 565 (702)
|+.+..+++.++|+|+++..++.+|..|+.. .|+||||||+|.++.+|+.+. +.....++++||..||+.....+
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 6778889999999999999999999988763 699999999999998886543 34456789999999999988889
Q ss_pred EEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-CCCC---------CCCCHHHHhhh--------
Q 045279 566 VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-KPID---------DSVDLHTIAQS-------- 627 (702)
Q Consensus 566 ~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-~~~~---------~~~~~~~la~~-------- 627 (702)
++||+|||+++.||||++||||||..|+|++|+.++|.+||+.++.. .++. ...++..++..
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~a~ 413 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLYAT 413 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999998875 3331 11122222211
Q ss_pred -------------------hcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 628 -------------------KFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 628 -------------------~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.+.+.+||++|+++|.+|...|+.+.+.. ....|+.+|+..|+..-
T Consensus 414 ~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-------~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 414 SEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-------GQVGLRIEHLLAAVLDE 478 (512)
T ss_pred hcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-------CCcCcCHHHHHHHHHHh
Confidence 12456899999999999999999998742 12379999999998754
No 52
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=2.5e-35 Score=316.57 Aligned_cols=247 Identities=47% Similarity=0.742 Sum_probs=226.3
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|.+.|++++|++..++.+.+.+..++.+++.|..+|..++.|+||+||||||||++|+++|+.++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
..|+|.+...++.+|..++...|+||||||+|.+...+.... .....+.+.+++.++++.....+++||+|||+++.
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 999999999999999999998999999999999987775432 23446677888888998877788999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++||||||..|+|+.|+.++|.+|++.++.+..+..+.+++.++ ..+.||+|+||+++|++|++.|+++...
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la--~~t~g~sg~dl~~l~~~A~~~a~~~~~~-- 349 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIA--KMTEGASGADLKAICTEAGMFAIREERD-- 349 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCCC--
Confidence 999999999999999999999999999999999988888788999999 6789999999999999999999887532
Q ss_pred CCCCCCCCccccHHHHHHHHhhc
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.|+.+||.+|+.++
T Consensus 350 ---------~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 350 ---------YVTMDDFIKAVEKV 363 (364)
T ss_pred ---------ccCHHHHHHHHHHh
Confidence 79999999999875
No 53
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=314.40 Aligned_cols=247 Identities=38% Similarity=0.607 Sum_probs=221.1
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+.++|+||+|++.+|+++.+.+..|+.+|+++..+|+.++.++||+||||||||++|+++|+.++.+|+.+.++.+..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|.|.....++.+|..|....|+||||||+|.++..+... .+....+++..++..+++...
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~---------------- 281 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ---------------- 281 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC----------------
Confidence 9999999999999999999999999999999998765322 123345677788888876432
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..+++||+|||.++.+||+++|+|||+..|+|+.|+.++|..||+.++.+..+..+.++..++..++||+|+||.++|.
T Consensus 282 -~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~ 360 (398)
T PTZ00454 282 -TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQ 360 (398)
T ss_pred -CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 2358999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
+|...+.++. ...++.+||.+++..+.
T Consensus 361 eA~~~A~r~~--------------------------------~~~i~~~df~~A~~~v~ 387 (398)
T PTZ00454 361 EAGMQAVRKN--------------------------------RYVILPKDFEKGYKTVV 387 (398)
T ss_pred HHHHHHHHcC--------------------------------CCccCHHHHHHHHHHHH
Confidence 9998887641 13688999999988754
No 54
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-36 Score=284.56 Aligned_cols=228 Identities=36% Similarity=0.623 Sum_probs=210.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+++.+++.|++|-.+.++.+++.+..|+.+|+.|..+|+.|+.+||+|||||||||..|+++|++.+..|+.+-+++++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|+|+....++++|+.|+....||+|+||||.+.+.+-.. .+....+..-+|+.++|++.
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd----------------- 312 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD----------------- 312 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC-----------------
Confidence 9999999999999999999999999999999998876432 22333455556777777764
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
.+|++-|+.+||+|+.+||+|+||||+++.++|..|+.+-|.+||+.+.+.+.++.+..+..+++.+++-+|++|+.+|.
T Consensus 313 prgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvct 392 (435)
T KOG0729|consen 313 PRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCT 392 (435)
T ss_pred CCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 045279 354 KAGNLAMK 361 (702)
Q Consensus 354 ~a~~~a~~ 361 (702)
+|.+.+++
T Consensus 393 eagmfair 400 (435)
T KOG0729|consen 393 EAGMFAIR 400 (435)
T ss_pred HhhHHHHH
Confidence 99998866
No 55
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=8.6e-35 Score=326.71 Aligned_cols=243 Identities=42% Similarity=0.703 Sum_probs=221.8
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
+.+.|++++|++++++.+.+.+ ..++.++.|..+|...++|+||+||||||||++|+++|.+++.+|+.++++++...|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 4578999999999999998855 558889999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
+|.+...++.+|..|+...||||||||+|.+...|+.+ .+......+++||.+|+++....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99988999999999999999999999999999877543 344567889999999999988889999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
+++||||||..|.|++|+.++|..||+.++++.....+.++..+| ..+.||+|+||+++|++|+..|.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA--~~t~G~sgaDL~~lvneAal~a~r~~~------ 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIA--RRTPGFSGADLANLLNEAAILTARRKK------ 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHH--hcCCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 999999999999999999999999999999998877888899999 678999999999999999988876643
Q ss_pred CCCCCccccHHHHHHHHhhc
Q 045279 661 SDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~ 680 (702)
..|+.+||+.|+.++
T Consensus 409 -----~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 -----ATITMKEIDTAIDRV 423 (638)
T ss_pred -----CCcCHHHHHHHHHHH
Confidence 279999999999987
No 56
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=9.8e-35 Score=276.52 Aligned_cols=220 Identities=34% Similarity=0.524 Sum_probs=193.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+|++|++++|+... .+...+.+|+.|..+ .+++||||||||||||++|+++|++.+.|++.+++..+...
T Consensus 115 ~~~it~ddViGqEeAK~kcr-li~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCR-LIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHH-HHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 45669999999999999887 565778888876655 57899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
++|....+++.+|+.|...+|||+||||+|.+.-++.-. ..+....+++.||+.||++.. ..
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e-----------------ne 253 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE-----------------NE 253 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc-----------------CC
Confidence 999999999999999999999999999999998776432 244556789999999998754 22
Q ss_pred eEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHH-HHHHH
Q 045279 277 YVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAA-LANKA 355 (702)
Q Consensus 277 ~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~-l~~~a 355 (702)
.|+.||+||.++.|||++++ ||...|+|..|+.++|.+|+..+.+.+.+.-..++..++..+.||+|+||.. +++.|
T Consensus 254 GVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred ceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHH
Confidence 39999999999999999999 9999999999999999999999999999998899999999999999999864 44555
Q ss_pred HHHHH
Q 045279 356 GNLAM 360 (702)
Q Consensus 356 ~~~a~ 360 (702)
...|+
T Consensus 332 Lh~Ai 336 (368)
T COG1223 332 LHRAI 336 (368)
T ss_pred HHHHH
Confidence 54443
No 57
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=5.7e-34 Score=306.79 Aligned_cols=254 Identities=41% Similarity=0.660 Sum_probs=221.7
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+.++|++|+|++++++++.+.+..|+.+|+.+..+|+.++.++||+||||||||++|+++|+.++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
...|.|..+..++.+|+.+....|+||||||+|.+...+.... +....+.+..++..+++...
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~-------------- 267 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP-------------- 267 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--------------
Confidence 9999999999999999999999999999999999987654432 12223445556665554321
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
.++++||+|||.++.+|++++|||||+..|.|+.|+.++|.+||+.++++..+..+.++..++..|.||+++|+..+
T Consensus 268 ---~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 268 ---RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred ---CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHH
Confidence 34599999999999999999999999999999999999999999999998888777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcC
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRR 417 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~ 417 (702)
|++|...++++. ...|+.+||..|+..+++....
T Consensus 345 ~~eA~~~a~~~~--------------------------------~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 345 CTEAGMFAIRDD--------------------------------RTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHHHcC--------------------------------CCCcCHHHHHHHHHHHhccccc
Confidence 999998887641 1358899999999988775543
No 58
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=8.8e-34 Score=330.26 Aligned_cols=270 Identities=43% Similarity=0.667 Sum_probs=234.4
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|++|+|++.+|+.|.+.+.+|+.+++++..+|++++.++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.|+++..++.+|..|....|+||||||||.+.+.++.. ......+++++|+..|++...
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~----------------- 587 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE----------------- 587 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC-----------------
Confidence 99999999999999999999999999999999999877543 234567889999999997532
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
..+++||+|||.++.+||+++|||||+..|+++.|+.++|.+||+.+.++..+..+.++..++..++||+|+||..+|++
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~ 667 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCRE 667 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999998888888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
|...++++......... +. ...........++.+||..+++.++|+..
T Consensus 668 A~~~a~~~~~~~~~~~~----~~----------~~~~~~~~~~~i~~~~f~~al~~~~ps~~ 715 (733)
T TIGR01243 668 AAMAALRESIGSPAKEK----LE----------VGEEEFLKDLKVEMRHFLEALKKVKPSVS 715 (733)
T ss_pred HHHHHHHHHhhhccchh----hh----------cccccccccCcccHHHHHHHHHHcCCCCC
Confidence 99999888654321000 00 00001112357999999999998887653
No 59
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2e-33 Score=301.82 Aligned_cols=247 Identities=39% Similarity=0.639 Sum_probs=218.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+..+|+||+|++.+++++.+.+..|+.+|+++..+|+.++.++||+||||||||++|+++|++++.+|+.+.++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.|.|.....++.+|..|....|+||||||||.+...+.... .....+.+..++..++++..
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~---------------- 319 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS---------------- 319 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc----------------
Confidence 99999999999999999999999999999999987654322 12234555667777776432
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
.+++.||+|||.++.+|++++|+|||+..|+|+.|+.++|.+||+.++.+..+..+.++..++..+.||+++|+.++|.
T Consensus 320 -~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~ 398 (438)
T PTZ00361 320 -RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICT 398 (438)
T ss_pred -cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
+|+..|.++- ...|+.+||..|+..+.
T Consensus 399 eA~~~Alr~~--------------------------------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 399 EAGLLALRER--------------------------------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred HHHHHHHHhc--------------------------------CCccCHHHHHHHHHHHH
Confidence 9999887641 13688999999988764
No 60
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=314.42 Aligned_cols=253 Identities=45% Similarity=0.694 Sum_probs=230.9
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+.++|++++|++.+++.+.+.+.+++.+++.+...+++++.++||+||||||||++|+++|.+++.+|+.+..+++
T Consensus 233 ~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l 312 (494)
T COG0464 233 LFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSEL 312 (494)
T ss_pred ccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHH
Confidence 44567889999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.+.|.|++++.++.+|..|+...||||||||+|++.+.++...+....+++++|+..|++...
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~----------------- 375 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEK----------------- 375 (494)
T ss_pred hccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCc-----------------
Confidence 999999999999999999999999999999999999998876666668999999999987654
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc--CCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRV--EGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~--~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
..+|+||+|||.++.+|++++|+|||+..++|++|+.++|.+||+.+++.... ..+.++..+++.+.||+++|+..+|
T Consensus 376 ~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~ 455 (494)
T COG0464 376 AEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALV 455 (494)
T ss_pred cCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHH
Confidence 34499999999999999999999999999999999999999999999986554 4677899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
++|...+.+... ...++.+||..+++...|+.
T Consensus 456 ~ea~~~~~~~~~-------------------------------~~~~~~~~~~~a~~~~~p~~ 487 (494)
T COG0464 456 REAALEALREAR-------------------------------RREVTLDDFLDALKKIKPSV 487 (494)
T ss_pred HHHHHHHHHHhc-------------------------------cCCccHHHHHHHHHhcCCCC
Confidence 999998877643 13688999999999876653
No 61
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=8.7e-34 Score=332.13 Aligned_cols=211 Identities=18% Similarity=0.270 Sum_probs=179.2
Q ss_pred hHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC----------cC----------------
Q 045279 452 PEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY----------VG---------------- 505 (702)
Q Consensus 452 ~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~----------~g---------------- 505 (702)
.....++|..+|+|+||+||||||||++||++|.+++.||+.+.++++++.| +|
T Consensus 1619 kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~ 1698 (2281)
T CHL00206 1619 KPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLD 1698 (2281)
T ss_pred cCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccc
Confidence 3455788999999999999999999999999999999999999999998765 12
Q ss_pred ---------------chHH--HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---CCCc
Q 045279 506 ---------------ESEL--AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---KRKG 565 (702)
Q Consensus 506 ---------------~~~~--~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---~~~~ 565 (702)
.++. .++.+|+.|++.+||||||||||+++.+... ...+++||.+|++.. ...+
T Consensus 1699 ~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~------~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1699 TELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESN------YLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccc------eehHHHHHHHhccccccCCCCC
Confidence 2222 3788999999999999999999999865211 224789999999763 4568
Q ss_pred EEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc--cCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHH
Q 045279 566 VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDDS-VDLHTIAQSKFCENLSGADLAAMM 642 (702)
Q Consensus 566 ~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~ 642 (702)
|+||||||+|+.||||++||||||+.|+++.|+..+|.+++..++. +..+..+ ++++.+| ..|.||+||||.++|
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA--~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFG--SITMGSNARDLVALT 1850 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHH--HhCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999998886543 3444433 5788999 679999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 643 NEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 643 ~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
++|+..|+++... .|+.+++..|+.++.
T Consensus 1851 NEAaliAirq~ks-----------~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1851 NEALSISITQKKS-----------IIDTNTIRSALHRQT 1878 (2281)
T ss_pred HHHHHHHHHcCCC-----------ccCHHHHHHHHHHHH
Confidence 9999999998643 799999999999764
No 62
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-34 Score=320.58 Aligned_cols=264 Identities=37% Similarity=0.601 Sum_probs=231.9
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEe
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIK 495 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~ 495 (702)
.....+.|+++||++.++..+++.+..++.|++.|..+++.||+|+||+||||||||..|+++|..+ +..|+.-+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 3345789999999999999999999999999999999999999999999999999999999999987 56788889
Q ss_pred cccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 496 GPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 496 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+++.+++|+|+.++.++.+|+.|+...|+|+||||||.|++.|+......-..++.+||..|+|...+..|+||+|||++
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999999999997776667788999999999999999999999999999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
+.+|||+.||||||+.++||+|+.+.|.+|+..+-++..-.. ..-+..+| ..+.||.|+||+.+|-+|++.++++..
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la--~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLA--EETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHH--HhccccchHHHHHHHHHHhhhhhcccc
Confidence 999999999999999999999999999999998877654222 22346677 668899999999999999999999864
Q ss_pred hhc-----CCCCCCCCccccHHHHHHHHhhcCCCCCH
Q 045279 655 ISS-----KSSSDVTPFTIKLTHFEQALSKISPSVSE 686 (702)
Q Consensus 655 ~~~-----~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 686 (702)
-.. ...-+.....|...||..|+.++.|+...
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 211 11122233358889999999999887655
No 63
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-33 Score=306.86 Aligned_cols=227 Identities=46% Similarity=0.693 Sum_probs=211.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...++|.|+.|.+++|+++.+.| .+++.|..|..+|.+-++++||+||||||||+||+++|.+.++||+.+++++++.-
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 45689999999999999999766 88999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
++|-...+++.+|.+|++++|||+||||||.+...++.. .++...+.+++||..||++..
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~----------------- 285 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG----------------- 285 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-----------------
Confidence 999999999999999999999999999999999877532 455667789999999998652
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
...|+||++||+|+-+||||+|||||++.|.++.|+...|.+|++.+.++..+...+++..+|+.|+||+++|+.+++++
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NE 365 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNE 365 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHH
Confidence 22399999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HHHHHHHH
Q 045279 355 AGNLAMKR 362 (702)
Q Consensus 355 a~~~a~~r 362 (702)
|+..+.++
T Consensus 366 Aal~aar~ 373 (596)
T COG0465 366 AALLAARR 373 (596)
T ss_pred HHHHHHHh
Confidence 99998876
No 64
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=4.3e-33 Score=317.23 Aligned_cols=245 Identities=39% Similarity=0.673 Sum_probs=222.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
...|.++.|.+..+..+.+.+.. +..+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 45789999999999999886655 56777788888888999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcc
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRA 581 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a 581 (702)
|.+...++.+|..|+...||||||||+|.+...|+.. ......+++++||.+||++.....++||+|||+|+.||++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9999999999999999999999999999999888653 2345578999999999999888999999999999999999
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSS 661 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~ 661 (702)
++||||||+.|+|++|+.++|.+||+.++++.++..+.++..++ ..+.||+|+||.++|++|+..|+++..
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la--~~t~G~sgadl~~l~~eAa~~a~r~~~------- 377 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNK------- 377 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHH--hhCCCCCHHHHHHHHHHHHHHHHHcCC-------
Confidence 99999999999999999999999999999999988889999999 678999999999999999999887643
Q ss_pred CCCCccccHHHHHHHHhhcCCC
Q 045279 662 DVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 662 ~~~~~~i~~~d~~~al~~~~~~ 683 (702)
..|++.||+.|+.++.+.
T Consensus 378 ----~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 378 ----RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ----CcccHHHHHHHHHHHhcc
Confidence 279999999999877543
No 65
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=9e-33 Score=301.26 Aligned_cols=242 Identities=26% Similarity=0.422 Sum_probs=207.9
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
+..+|++|+|++.+|+.+.+..... .......|+++++++||+||||||||++|+++|++++.+++.++++.+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 4568999999999999998755321 2223456889999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchh-hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN-LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
.|+++..++.+|..|....||||||||||.++...+. ...+...+++..++..|++. ...
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------------~~~ 360 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------------KSP 360 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------------CCc
Confidence 9999999999999999999999999999999875432 23456678888999888742 234
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC--CcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE--GSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~--~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
|+||||||.++.+||+++|+|||+..++++.|+.++|.+||+.++++.... .+.++..++..|.||+|+||.++|.+|
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEA 440 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886533 367899999999999999999999998
Q ss_pred HHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 356 GNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 356 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
...+... ...++.+||..++..+.|..
T Consensus 441 ~~~A~~~---------------------------------~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 441 MYIAFYE---------------------------------KREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHc---------------------------------CCCcCHHHHHHHHHhcCCCc
Confidence 8766431 12578999999999988865
No 66
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=2.7e-31 Score=270.28 Aligned_cols=249 Identities=19% Similarity=0.251 Sum_probs=186.1
Q ss_pred ccccc-CCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcC
Q 045279 427 KWEDV-GGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG 505 (702)
Q Consensus 427 ~~~~i-~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g 505 (702)
.|+.+ +|+.-.+..+...+....+.. ....+.++|.+++||||||||||++|+++|++++.+|+.++++++.++|+|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~kn~--l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIAKNF--LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHHhhh--hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 666666665554443322221 123678999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHh-----CCCeEEEEeCcchhhcccCCCCchHHHHHH-HHHHHhhhCC------------CCCCcEE
Q 045279 506 ESELAVRTLFSRART-----CSPCILFFDEVDALTTKRGKEGGWVVERLL-NQLLIELDGA------------DKRKGVF 567 (702)
Q Consensus 506 ~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~-~~ll~~l~~~------------~~~~~~~ 567 (702)
++++.+|++|..|.. ..||||||||||+++++|+........+++ .+||++||+. ....+++
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999875 469999999999999999755444445555 7999998863 3456799
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCC--CCCHHH--------
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCE--NLSGAD-------- 637 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~--~~sg~d-------- 637 (702)
||+|||+|+.|||+++||||||+.+ +.|+.++|..|++.++++..+. ..++..|+...-.. .|.|+-
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999999999999999999865 6899999999999999998776 47777777431111 245533
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-CCCCCCCccccHHHHHHHHhhc
Q 045279 638 LAAMMNEAAMAALEDKLISSK-SSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 638 l~~~~~~a~~~a~~~~~~~~~-~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++..|.+.....+...+-... ......++.+|.+.+.++=..+
T Consensus 348 v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l 391 (413)
T PLN00020 348 VRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNML 391 (413)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 444555555444444433221 2334455677888777765444
No 67
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.98 E-value=1e-31 Score=299.53 Aligned_cols=245 Identities=44% Similarity=0.670 Sum_probs=214.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+||+|++++|+++.+.+. .+.+++.+...|...++++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 457799999999999999997664 5888888888899999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.....++.+|..+....|+||||||||.+...++.. ......+.++.|+..|+++..
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~----------------- 190 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT----------------- 190 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-----------------
Confidence 999999999999999999999999999999999776542 233446778889998886532
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
.+.++||+|||.++.+||+++|||||+..|+++.|+.++|.+|++.+++........++..++..+.||+++||..+|++
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~e 270 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNE 270 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHH
Confidence 33499999999999999999999999999999999999999999999988776667789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
|...+.++. ...|+.+|+..++....
T Consensus 271 A~~~a~~~~--------------------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 271 AALLAARKN--------------------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred HHHHHHHcC--------------------------------CCCCCHHHHHHHHHHHh
Confidence 877654420 13578899999887654
No 68
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.98 E-value=3.5e-31 Score=284.50 Aligned_cols=229 Identities=43% Similarity=0.715 Sum_probs=202.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+.++|++|+|++++++++.+.+..|+.+++.+..+|+.++.++||+||||||||++|+++|+.++.+|+.+.++.+..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.+.|.....++.+|..+....|+||||||+|.+...+.... +....+.+..++..+++...
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~---------------- 258 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP---------------- 258 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC----------------
Confidence 89999888899999999988999999999999986654321 12223445556666654321
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
.+++.||+|||.++.+|++++|+|||+..|.|+.|+.++|.+||+.++....+....++..+++.+.||+++|+..+|+
T Consensus 259 -~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~ 337 (364)
T TIGR01242 259 -RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICT 337 (364)
T ss_pred -CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999998888777788999999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 354 KAGNLAMKR 362 (702)
Q Consensus 354 ~a~~~a~~r 362 (702)
+|...++++
T Consensus 338 ~A~~~a~~~ 346 (364)
T TIGR01242 338 EAGMFAIRE 346 (364)
T ss_pred HHHHHHHHh
Confidence 999888764
No 69
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=7.1e-31 Score=285.49 Aligned_cols=191 Identities=38% Similarity=0.672 Sum_probs=169.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------e
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP----------F 186 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----------~ 186 (702)
..+.++|++|+|++.+++++.+.+..|+.+|+++...|+++++++|||||||||||++|+++|+.++.+ |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 356789999999999999999999999999999999999999999999999999999999999998644 5
Q ss_pred EEEechhhhcccccccHHHHHHHHHHHHhh----CCceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCC
Q 045279 187 YKISATEVVSGVSGASEENIRDLFSKAYRT----APSIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQP 261 (702)
Q Consensus 187 ~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~ 261 (702)
+.+.++++...|.|+++..++.+|+.+... .|+||||||+|.++..++.. .++...+++.+|+..|++...
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~---- 330 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES---- 330 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc----
Confidence 667778888899999999999999998763 69999999999999776543 345567888999999987542
Q ss_pred CCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 262 GDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
.++++||+|||+++.|||+++|||||+..|+|+.|+.++|.+||+.++..
T Consensus 331 -------------~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 -------------LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred -------------CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 24599999999999999999999999999999999999999999988764
No 70
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=280.33 Aligned_cols=271 Identities=36% Similarity=0.544 Sum_probs=229.0
Q ss_pred CcccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Q 045279 111 GAEELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKIS 190 (702)
Q Consensus 111 ~~~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~ 190 (702)
..++....+.+.|+|+.|++.+++.+.+.+++|+.++.+|..+ ..+..++||.||||+|||+|+++||.+.+..|+.++
T Consensus 140 ~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iS 218 (428)
T KOG0740|consen 140 RNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNIS 218 (428)
T ss_pred HHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeecc
Confidence 3555556778899999999999999999999999999997743 346689999999999999999999999999999999
Q ss_pred chhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
++.+.+.|.|+.+..++.+|.-|+..+|+|+||||||.++..+.....+..+++..+++.++++...
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s------------- 285 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNS------------- 285 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccC-------------
Confidence 9999999999999999999999999999999999999999999777788889999999988886432
Q ss_pred CCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc-cCCcccHHHHHhhCCCCCHHHHH
Q 045279 271 SDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR-VEGSFDLVKIARSTPGFVGADLA 349 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~-~~~~~~~~~la~~t~g~~~~dl~ 349 (702)
....+|+||||||.|+++|.+++| ||..++++|.|+.+.|..+|..++.... .....++..+++.|+||++.|+.
T Consensus 286 --~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~ 361 (428)
T KOG0740|consen 286 --APDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT 361 (428)
T ss_pred --CCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence 233479999999999999999999 9999999999999999999999998773 23346799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCc
Q 045279 350 ALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRRE 418 (702)
Q Consensus 350 ~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~ 418 (702)
++|.+|.+-..+....... +.. -.......++..||..+...+.+.....
T Consensus 362 ~l~kea~~~p~r~~~~~~~--~~~-----------------~~~~~~r~i~~~df~~a~~~i~~~~s~~ 411 (428)
T KOG0740|consen 362 ALCKEAAMGPLRELGGTTD--LEF-----------------IDADKIRPITYPDFKNAFKNIKPSVSLE 411 (428)
T ss_pred HHHHHhhcCchhhcccchh--hhh-----------------cchhccCCCCcchHHHHHHhhccccCcc
Confidence 9999998776655433200 000 0001225688899999999888765443
No 71
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=7.1e-31 Score=295.15 Aligned_cols=244 Identities=44% Similarity=0.656 Sum_probs=211.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...++|+|++|++++++++.+.+ ..+..++.+..+|...+.++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 44679999999999999998765 56888888888999999999999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchh---hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKREN---LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.....+..+|..|....|+||||||||.+...++. ..+....+.+..|+..++++..
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~----------------- 318 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG----------------- 318 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC-----------------
Confidence 88888888999999999999999999999999866532 1233445678888888886532
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
...|+||+|||.++.+|++++|||||+..+.++.|+.++|.+||+.+++......+.++..+++.+.||+++||.++|++
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvne 398 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNE 398 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 23499999999999999999999999999999999999999999999988776667789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhcc
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~ 411 (702)
|+..+.++. ...++.+||..++..+
T Consensus 399 Aal~a~r~~--------------------------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 399 AAILTARRK--------------------------------KATITMKEIDTAIDRV 423 (638)
T ss_pred HHHHHHHhC--------------------------------CCCcCHHHHHHHHHHH
Confidence 987765431 1357888999888764
No 72
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-30 Score=255.01 Aligned_cols=227 Identities=39% Similarity=0.640 Sum_probs=201.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
...++|++++|+-..+.++.+.+..|+.+|.++.++|+++|.+++||||||||||.+|+++|..+++.|+.+..+.+.++
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHH---HHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQ---LMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~---ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|++...+++.|..|....|||||+||||.+.+.+........+.+..+ |+.+|+++..
T Consensus 206 yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~----------------- 268 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT----------------- 268 (388)
T ss_pred hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh-----------------
Confidence 99999999999999999999999999999999987744322233334444 4455554432
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
-++|-+|.|||+|+.|+|+|+||||+++.+.+|.|.+..|+.|++.+.......+..+...+.+..+||++.|+++.|.+
T Consensus 269 l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tE 348 (388)
T KOG0651|consen 269 LHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTE 348 (388)
T ss_pred cccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhccc
Confidence 34589999999999999999999999999999999999999999999888888888889999999999999999999999
Q ss_pred HHHHHHH
Q 045279 355 AGNLAMK 361 (702)
Q Consensus 355 a~~~a~~ 361 (702)
|...+.+
T Consensus 349 ag~Fa~~ 355 (388)
T KOG0651|consen 349 AGMFAIP 355 (388)
T ss_pred ccccccc
Confidence 8766544
No 73
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=1.8e-28 Score=279.41 Aligned_cols=245 Identities=41% Similarity=0.647 Sum_probs=211.6
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
...+|+++.|.+.+++++.+.+.. +..+..+..++...+.+++|+||||||||+++++++++++.+|+.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 355899999999999999987654 5566666667778888999999999999999999999999999999999999989
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
.|.....++.+|..+....|+||||||+|.+...++.. ......+.++.|+..|+++.. .
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-----------------~ 288 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-----------------N 288 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC-----------------C
Confidence 99999999999999999999999999999998766532 233446788889999887542 2
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..++||+|||.++.+||+++|||||++.|.++.|+.++|.+||+.++++..+..+.++..+++.+.||+++||.++|++|
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEA 368 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999998887788899999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 356 GNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 356 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
...+.+. ....++..|+..+...+.+
T Consensus 369 a~~a~r~--------------------------------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 369 ALFAARG--------------------------------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHc--------------------------------CCCcccHHHHHHHHHHHhc
Confidence 9887653 1135788899888876543
No 74
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=8.5e-29 Score=290.61 Aligned_cols=195 Identities=23% Similarity=0.330 Sum_probs=159.2
Q ss_pred CcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc----------cc-----------------
Q 045279 148 QLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV----------SG----------------- 200 (702)
Q Consensus 148 ~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~----------~g----------------- 200 (702)
.....+|+.+++||||+||||||||+||+++|.+.++||+.++++++...+ .|
T Consensus 1620 P~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~ 1699 (2281)
T CHL00206 1620 PFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDT 1699 (2281)
T ss_pred CHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccch
Confidence 344677899999999999999999999999999999999999999998653 11
Q ss_pred --------------ccH--HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 201 --------------ASE--ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 201 --------------~~~--~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
... ..++.+|+.|+..+||||||||||.+..+.. ....+.+|+..|++...
T Consensus 1700 e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~------- 1766 (2281)
T CHL00206 1700 ELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCE------- 1766 (2281)
T ss_pred hhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccc-------
Confidence 111 2378899999999999999999999986521 11236778888875321
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh--cCcccCCc-ccHHHHHhhCC
Q 045279 265 KSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT--RNLRVEGS-FDLVKIARSTP 341 (702)
Q Consensus 265 ~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~--~~~~~~~~-~~~~~la~~t~ 341 (702)
......|+||||||.|+.||||++|||||++.|.++.|+..+|.+++..++ ++..+... .++..+|+.|+
T Consensus 1767 -------~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~ 1839 (2281)
T CHL00206 1767 -------RCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITM 1839 (2281)
T ss_pred -------cCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCC
Confidence 001234999999999999999999999999999999999999999987654 33333332 47899999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 045279 342 GFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 342 g~~~~dl~~l~~~a~~~a~~r 362 (702)
||+|+||.++|++|+..++++
T Consensus 1840 GfSGADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1840 GSNARDLVALTNEALSISITQ 1860 (2281)
T ss_pred CCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999988775
No 75
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=4.3e-28 Score=246.97 Aligned_cols=231 Identities=22% Similarity=0.264 Sum_probs=172.7
Q ss_pred CCcccc-cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 121 PRFQDL-GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 121 ~~~~~i-~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
.+|+++ +|+--.+.-+.+.+....++ ....++++++.+++||||||||||++|+++|++++.+++.+++.++.++|.
T Consensus 112 ~~f~~~~g~~~~~p~f~dk~~~hi~kn--~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 112 RSFDNLVGGYYIAPAFMDKVAVHIAKN--FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENA 189 (413)
T ss_pred cchhhhcCccccCHHHHHHHHHHHHhh--hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcC
Confidence 467888 55444444333322221111 111357899999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHh-----hCCceEEechhhHhhhcchhhhHHHHHHHH-HHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYR-----TAPSIVFIDEIDAIASKRENLQREMERRIV-TQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~-~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
|++++.++.+|..|.. .+||||||||||.+++.++..+.....+++ .+|+.++|+....-..|... ...
T Consensus 190 GEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~-----~~~ 264 (413)
T PLN00020 190 GEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWR-----EKE 264 (413)
T ss_pred CcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcccccccccc-----ccc
Confidence 9999999999999975 469999999999999988755555555565 79999998643211111100 001
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCC----CCHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPG----FVGADLA 349 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g----~~~~dl~ 349 (702)
....|.||+|||.++.|||+|+|+|||+..+ ..|+.++|.+||+.+++...+. ..++..++..++| |.|+--.
T Consensus 265 ~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlra 341 (413)
T PLN00020 265 EIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRA 341 (413)
T ss_pred cCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHH
Confidence 2345999999999999999999999999864 6899999999999999988765 4678888888877 4555444
Q ss_pred HHHHHHHHHHHH
Q 045279 350 ALANKAGNLAMK 361 (702)
Q Consensus 350 ~l~~~a~~~a~~ 361 (702)
.+.+++++..+.
T Consensus 342 r~yd~~v~~~i~ 353 (413)
T PLN00020 342 RVYDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHHHH
Confidence 555555444433
No 76
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-24 Score=245.30 Aligned_cols=470 Identities=21% Similarity=0.261 Sum_probs=284.3
Q ss_pred CcccccCH-HHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 122 RFQDLGGM-ESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 122 ~~~~i~G~-~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
.++.++|. ++.++++++.+ ..+.++|.+|+|.||+|||.++..+|+.. +..++.++
T Consensus 184 kldPvigr~deeirRvi~iL-------------~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~ 250 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEIL-------------SRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALD 250 (898)
T ss_pred CCCCccCCchHHHHHHHHHH-------------hccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEE
Confidence 47788887 88888888776 45566899999999999999999999986 35677888
Q ss_pred chhhhcc--cccccHHHHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 191 ATEVVSG--VSGASEENIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 191 ~~~l~~~--~~g~~~~~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
...+..+ +.|+.+.+++.+...+. .+...||||||+|.+.+...+....... .+|..+-.
T Consensus 251 ~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~----nlLkp~L~------------- 313 (898)
T KOG1051|consen 251 FGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAA----NLLKPLLA------------- 313 (898)
T ss_pred hhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHH----HhhHHHHh-------------
Confidence 8777666 67889999999999888 4466799999999999876552222222 23333332
Q ss_pred CCCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHH-------
Q 045279 268 SDASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVK------- 335 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~------- 335 (702)
.|.+.+||||+.-+ .-+|++.+ ||+ .+.++.|+.++...||......+..++...+..
T Consensus 314 -------rg~l~~IGatT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~ 383 (898)
T KOG1051|consen 314 -------RGGLWCIGATTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAA 383 (898)
T ss_pred -------cCCeEEEecccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCccccccccccc
Confidence 23489999887422 67999999 994 588999999998999988877765554432211
Q ss_pred -HH--hhCCCCCHHHHHHHHHHHHHHHHH------HHHHh----------hhhccccCc---cccccCcc----------
Q 045279 336 -IA--RSTPGFVGADLAALANKAGNLAMK------RIIDQ----------RKSELSGNS---IAEQHSDD---------- 383 (702)
Q Consensus 336 -la--~~t~g~~~~dl~~l~~~a~~~a~~------r~~~~----------~~~~~~~~~---~~~~~~~~---------- 383 (702)
+. ..+..|-+.-...++++|+..... ..+.. ....+.... +.......
T Consensus 384 ~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~ 463 (898)
T KOG1051|consen 384 QLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQ 463 (898)
T ss_pred chhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccc
Confidence 11 223334444444455555433211 00000 000000000 00000000
Q ss_pred cccCCCChh--hhhhh-----cc---------------------------------------cHhHHHHHHhccCCCC--
Q 045279 384 WWRQPWLPE--EMERL-----TI---------------------------------------TMTDFEEATKMVQPSS-- 415 (702)
Q Consensus 384 ~~~~~~~~~--~~~~~-----~i---------------------------------------~~~d~~~~l~~~~p~~-- 415 (702)
.....+..+ ..+.+ .+ +..++......|....
T Consensus 464 ~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~ 543 (898)
T KOG1051|consen 464 PLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVD 543 (898)
T ss_pred cchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchh
Confidence 000000000 00000 00 0011111111111000
Q ss_pred cC-----ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC---CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 416 RR-----EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV---DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 416 ~~-----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~---~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.. +.+..+....-+.|.|++++...+.++|... +.|. .+...++|.||.|+|||.+|+++|..+
T Consensus 544 ~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s--------r~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~ 615 (898)
T KOG1051|consen 544 RLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS--------RAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV 615 (898)
T ss_pred hhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh--------hcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH
Confidence 00 0000011112244677777777666666554 2222 356678999999999999999999987
Q ss_pred ---CCeEEEEeccccc---------ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 488 ---GANFIHIKGPELL---------NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 488 ---~~~~~~i~~~~l~---------~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
.-.|+.++++++. ..|+|..+.. ++.+..++.+++||||||||... ..+++.|++
T Consensus 616 Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~LteavrrrP~sVVLfdeIEkAh-----------~~v~n~llq 682 (898)
T KOG1051|consen 616 FGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAVKRRPYSVVLFEEIEKAH-----------PDVLNILLQ 682 (898)
T ss_pred cCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHHhcCCceEEEEechhhcC-----------HHHHHHHHH
Confidence 5689999999632 2488887766 78888899999999999999999 889999999
Q ss_pred hhhCCC---------CCCcEEEEEecCCC----------------------------------------CccCccccCCC
Q 045279 556 ELDGAD---------KRKGVFVIGATNRP----------------------------------------DVMDRAVLRPG 586 (702)
Q Consensus 556 ~l~~~~---------~~~~~~vI~atn~~----------------------------------------~~ld~a~~r~g 586 (702)
.+|... ...+++||||+|.- ..+.|.|++
T Consensus 683 ~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~n-- 760 (898)
T KOG1051|consen 683 LLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLN-- 760 (898)
T ss_pred HHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhc--
Confidence 998732 34679999998731 123344544
Q ss_pred ccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CC---------CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 587 RFGKLLYVPLPTPDERGLILEALARKKPIDD-SV---------DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 587 Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~---------~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
|+|.++.|.+.+.++..+|....+....... +. -.+.++...+...|..+-|++.|++-....+....
T Consensus 761 rid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~i~~~~~~~la~~~ 838 (898)
T KOG1051|consen 761 RIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRSIEERFENRLAEAL 838 (898)
T ss_pred ccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHHHHHHHHHHHhhhh
Confidence 8899999999998877777766554321110 00 01122211122233446666777666666555554
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.91 E-value=1.5e-23 Score=216.05 Aligned_cols=238 Identities=16% Similarity=0.205 Sum_probs=177.1
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh-------CCeEEEEecc
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA-------GANFIHIKGP 497 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~~i~~~ 497 (702)
+++++|++.+|+.+.+.+.+ +.....+.+.|..+ +.+++|+||||||||++|+++|..+ ..+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45799999999999997766 44556667777654 3458999999999999999999975 2368999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC-
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD- 576 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~- 576 (702)
++.+.|+|+++..++.+|++| .++||||||+|.+...++ ......++++.|+..|+.. ..+++||++++...
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKA---MGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ--RDDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHc---cCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHH
Confidence 999999999988888888887 458999999999975432 2334578899999999854 35678888876422
Q ss_pred ----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HH----HHhhhhcCCCCC-HHHHHHHHHHHH
Q 045279 577 ----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LH----TIAQSKFCENLS-GADLAAMMNEAA 646 (702)
Q Consensus 577 ----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~----~la~~~~~~~~s-g~dl~~~~~~a~ 646 (702)
.++|++.+ ||+.+|+|++|+.+++.+|+..++++.....+.+ .. .+........|+ ++++++++..|+
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34689988 9999999999999999999999998765443332 22 222222234666 799999999999
Q ss_pred HHHHHHHHhhcCCC-CCCCCccccHHHHHH
Q 045279 647 MAALEDKLISSKSS-SDVTPFTIKLTHFEQ 675 (702)
Q Consensus 647 ~~a~~~~~~~~~~~-~~~~~~~i~~~d~~~ 675 (702)
.....+........ +...-.+|+.+|+.+
T Consensus 252 ~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGGRVLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCCCCCCHHHHhCCCHHHHhH
Confidence 88887776532111 122234566666644
No 78
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=1.9e-22 Score=208.13 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=176.1
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHhC-------CeEEEEecccc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEAG-------ANFIHIKGPEL 499 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~~-------~~~~~i~~~~l 499 (702)
+++|++.+|+.+.+.+.+ +..+..+.+.|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999997766 66777777888764 45899999999999999999998762 37999999999
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC--CC-
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR--PD- 576 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~--~~- 576 (702)
.+.|+|+++..++.+|+.| .++||||||++.+.+.++ ......++++.|+..|+.. ..+++||++++. ++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA---MGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHc---cCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHHHH
Confidence 9999999988888999887 448999999999975432 2234478889999999853 356788888764 23
Q ss_pred --ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhh----hcCCCC-CHHHHHHHHHHHHHH
Q 045279 577 --VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQS----KFCENL-SGADLAAMMNEAAMA 648 (702)
Q Consensus 577 --~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~----~~~~~~-sg~dl~~~~~~a~~~ 648 (702)
.++|++.+ ||+..|.||+|+.+++..|++.++++.....+.+ ++.+... ...+.+ +++++++++..|+..
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 35899999 9999999999999999999999999865432222 2222211 111233 469999999999887
Q ss_pred HHHHHHhhcC-CCCCCCCccccHHHHHHH
Q 045279 649 ALEDKLISSK-SSSDVTPFTIKLTHFEQA 676 (702)
Q Consensus 649 a~~~~~~~~~-~~~~~~~~~i~~~d~~~a 676 (702)
...+...... ......-.+|+.+|+.++
T Consensus 253 ~~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 253 QANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 7766654221 111223346667776543
No 79
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=2.2e-22 Score=207.24 Aligned_cols=217 Identities=18% Similarity=0.278 Sum_probs=164.9
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCC---CceEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEech
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRP---MAGILLYGPPGCGKTKLAHAIANETG-------VPFYKISAT 192 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~---~~~vLl~GppGtGKT~la~~la~~l~-------~~~~~i~~~ 192 (702)
+.+|+|++++|++|.+.+.+ +..++++...|+.+ +.++||+||||||||++|+++|+.+. .+++.++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 35899999999999987755 44455555666643 45699999999999999999998762 368999999
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
++...+.|.++..+..+|+.+. ++||||||+|.+..... ...........|+..|+..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~----------------- 158 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQ----------------- 158 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcC-----------------
Confidence 9999999988888888888874 35999999999865322 1234567778888888752
Q ss_pred CCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-H---HH-HHhh--C
Q 045279 273 SKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-L---VK-IARS--T 340 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~---~~-la~~--t 340 (702)
.++++||++++... .++|++++ ||+.+|.|++|+.+++.+|+..+++......... . .. +.+. .
T Consensus 159 --~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~ 234 (287)
T CHL00181 159 --RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQ 234 (287)
T ss_pred --CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCC
Confidence 24488888886522 45799999 9999999999999999999999987654332222 1 11 2221 2
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHh
Q 045279 341 PGF-VGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 341 ~g~-~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
+.| ++++++++++.+......|+...
T Consensus 235 ~~~GNaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 235 PLFANARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 344 48999999999999998888765
No 80
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=9.3e-22 Score=201.66 Aligned_cols=218 Identities=17% Similarity=0.218 Sum_probs=162.1
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh-------CCeEEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA-------GANFIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~~i~~ 496 (702)
.+++++|++.+|+.+.+.+.+.... ....+.|..+ ..+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 3577999999999999987766443 3333455543 4578999999999999999999875 347889999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 497 PELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
+++.+.|+|+++..++.+|..+. ++||||||+|.|... .......+.++.|+..|+.. ..++++|++++..+
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~---~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~~~ 154 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG---GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYSDE 154 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC---CccchHHHHHHHHHHHHhcc--CCCEEEEecCCcch
Confidence 99999999999999999998874 589999999999732 11223467888999999864 34456666654322
Q ss_pred -----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhh------cCC-CCCHHHHHHHHH
Q 045279 577 -----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSK------FCE-NLSGADLAAMMN 643 (702)
Q Consensus 577 -----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~------~~~-~~sg~dl~~~~~ 643 (702)
.++|++.+ ||+..|.||.|+.+++..|++.++.......+.+ ++.++... ... .-+++.+++++.
T Consensus 155 ~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 155 MDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred hHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 47889988 9999999999999999999999998765543333 33332110 011 235688999999
Q ss_pred HHHHHHHHHHHh
Q 045279 644 EAAMAALEDKLI 655 (702)
Q Consensus 644 ~a~~~a~~~~~~ 655 (702)
.|......+...
T Consensus 233 ~a~~~~~~r~~~ 244 (261)
T TIGR02881 233 KAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHhc
Confidence 888777666553
No 81
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.88 E-value=7.3e-22 Score=203.74 Aligned_cols=217 Identities=18% Similarity=0.282 Sum_probs=166.3
Q ss_pred cc-cccCHHHHHHHHHHHhhhhccCCCcccccCCC---CCceEEEECCCCCCHHHHHHHHHHHhC-------CCeEEEec
Q 045279 123 FQ-DLGGMESVLEELKMEVIVPLYHPQLPQWLGVR---PMAGILLYGPPGCGKTKLAHAIANETG-------VPFYKISA 191 (702)
Q Consensus 123 ~~-~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l~-------~~~~~i~~ 191 (702)
++ +++|++++|++|.+.+.+ +..++.+...|+. ++.+++|+||||||||++|+++|+.+. .+++.+++
T Consensus 20 l~~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~ 98 (284)
T TIGR02880 20 LDRELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR 98 (284)
T ss_pred HHHhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence 44 799999999999987755 6566666677766 355899999999999999999988773 37999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.++...+.|.+...+..+|+.+.. ++|||||++.+..... .......+...|+..|+..
T Consensus 99 ~~l~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~---------------- 157 (284)
T TIGR02880 99 DDLVGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQ---------------- 157 (284)
T ss_pred HHHhHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcC----------------
Confidence 999988999888888888988744 5999999999864322 1234456677888888742
Q ss_pred CCCCCeEEEEEecCCC--C---CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhh------
Q 045279 272 DSKPGYVLVIGATNRP--D---AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARS------ 339 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~--~---~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~------ 339 (702)
.++++||++++.. + .++|++++ ||...|.||.|+.+++.+|+..++++........ ...+...
T Consensus 158 ---~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~ 232 (284)
T TIGR02880 158 ---RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRT 232 (284)
T ss_pred ---CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCC
Confidence 2458888887653 2 46899999 9999999999999999999999988764332222 2222221
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHh
Q 045279 340 TPG-FVGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 340 t~g-~~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
.+. -+++.+++++..+......|+..+
T Consensus 233 ~~~~GN~R~lrn~ve~~~~~~~~r~~~~ 260 (284)
T TIGR02880 233 QPHFANARSIRNAIDRARLRQANRLFCD 260 (284)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence 122 368999999999999888888754
No 82
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=2e-21 Score=199.12 Aligned_cols=217 Identities=18% Similarity=0.259 Sum_probs=161.1
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCC---CCceEEEECCCCCCHHHHHHHHHHHh-------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR---PMAGILLYGPPGCGKTKLAHAIANET-------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l-------~~~~~~i~~ 191 (702)
.+++++|++++|++|.+.+.++... ..+...|.. ...+++|+||||||||++|+++|+.+ ..+++.+++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~ 82 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER 82 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH
Confidence 4789999999999999887665433 222233443 34689999999999999999999875 247889999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+++...+.|+....+..+|..+. ++||||||+|.|....+ .......+..|+..|+..
T Consensus 83 ~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~---------------- 140 (261)
T TIGR02881 83 ADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDN---------------- 140 (261)
T ss_pred HHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhcc----------------
Confidence 99999999999999999998874 45999999999974221 223455677788888753
Q ss_pred CCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHh-------
Q 045279 272 DSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIAR------- 338 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~------- 338 (702)
++++++|++++..+ .++|++++ ||+..+.|+.|+.+++.+|++.++.........+ +..++.
T Consensus 141 ---~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 215 (261)
T TIGR02881 141 ---RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQ 215 (261)
T ss_pred ---CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHh
Confidence 23467776664432 47899999 9988999999999999999999887654433222 222211
Q ss_pred --hCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 045279 339 --STPGFVGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 339 --~t~g~~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
....-+++.+.+++..|......|++..
T Consensus 216 ~~~~~~gn~R~~~n~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 216 LSSREFSNARYVRNIIEKAIRRQAVRLLDK 245 (261)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 1123478999999999988888877654
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.86 E-value=3.4e-21 Score=176.34 Aligned_cols=130 Identities=45% Similarity=0.770 Sum_probs=119.4
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCch
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGW 544 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~ 544 (702)
+||+||||||||++|+.+|+.++.+++.++++++.+.+.+.+...++.+|..+.... |+||||||+|.+.+..+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 689999999999999999999999999999999999999999999999999998887 9999999999999888556667
Q ss_pred HHHHHHHHHHHhhhCCCCC-CcEEEEEecCCCCccCccccCCCccceEEEcCC
Q 045279 545 VVERLLNQLLIELDGADKR-KGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 545 ~~~~~~~~ll~~l~~~~~~-~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~ 596 (702)
....+++.|+..++..... .+++||++||.++.++++++| +||+..|++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7789999999999987655 669999999999999999998 89999999874
No 84
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.1e-21 Score=193.18 Aligned_cols=237 Identities=26% Similarity=0.353 Sum_probs=175.2
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcC-CCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFG-VDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~ 496 (702)
.|+.++--.++|+.+-.+....+...+....-. +...+-+||+||||||||+|+|++|+.+ ...++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 588888778888888776655443322111111 1234558999999999999999999987 457899999
Q ss_pred ccccccCcCchHHHHHHHHHHHHh---CCC--eEEEEeCcchhhcccCC----CCchHHHHHHHHHHHhhhCCCCCCcEE
Q 045279 497 PELLNKYVGESELAVRTLFSRART---CSP--CILFFDEVDALTTKRGK----EGGWVVERLLNQLLIELDGADKRKGVF 567 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~---~~~--~vl~iDEid~l~~~r~~----~~~~~~~~~~~~ll~~l~~~~~~~~~~ 567 (702)
..++++|.+++.+.+..+|++... -.. -.++|||+++++..|.. +.....-+++|.+|++||......+++
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 999999999999999999987642 122 35668999999987732 233455799999999999999999999
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC---CC-C-C--------CC-----HHHHhhhhc
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP---ID-D-S--------VD-----LHTIAQSKF 629 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~---~~-~-~--------~~-----~~~la~~~~ 629 (702)
+++|+|..+.||.||.. |-|-+.++++|+...+.+|++..+.+.- +- . . .. ...+. ...
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~-~~~ 376 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILI-ELS 376 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHH-HHh
Confidence 99999999999999998 9999999999999999999998776521 10 0 0 01 11122 123
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 630 CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 630 ~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
+.|.||+-||.+=--|- .+. ....+|+.++|..|+..
T Consensus 377 ~~gLSGRtlrkLP~Lah----a~y---------~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPLLAH----AEY---------FRTFTVDLSNFLLALLE 413 (423)
T ss_pred hcCCccchHhhhhHHHH----Hhc---------cCCCccChHHHHHHHHH
Confidence 46889988887643222 111 12247899999888754
No 85
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.7e-20 Score=188.28 Aligned_cols=209 Identities=26% Similarity=0.378 Sum_probs=155.5
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGE 506 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~ 506 (702)
.+++++....++..+.+.-...-.. .....+-++||||||||||||++|+-||...|..+-.+.+.++.- .-.+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAP-lG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAP-LGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccc-cchH
Confidence 3566666666666665532221111 112345678999999999999999999999999998888888643 2234
Q ss_pred hHHHHHHHHHHHHhCCCe-EEEEeCcchhhcccCCCC-chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccC
Q 045279 507 SELAVRTLFSRARTCSPC-ILFFDEVDALTTKRGKEG-GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLR 584 (702)
Q Consensus 507 ~~~~~~~~f~~a~~~~~~-vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r 584 (702)
....+.++|+.+.....+ +|||||+|.+...|.... +...+..+|.||-.-. .....++++.+||+|..+|.++..
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsAV~D 504 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSAVND 504 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHHHHh
Confidence 566789999999876554 688999999999887653 4456778888875543 345678889999999999999988
Q ss_pred CCccceEEEcCCCCHHHHHHHHHHHhccCCCCC---------------------------CCCHHHHhhhhcCCCCCHHH
Q 045279 585 PGRFGKLLYVPLPTPDERGLILEALARKKPIDD---------------------------SVDLHTIAQSKFCENLSGAD 637 (702)
Q Consensus 585 ~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~---------------------------~~~~~~la~~~~~~~~sg~d 637 (702)
|||.+++||+|..++|..|+..++.++-... +..+...| ..|+||||++
T Consensus 505 --Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA--kkTeGfSGRE 580 (630)
T KOG0742|consen 505 --RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA--KKTEGFSGRE 580 (630)
T ss_pred --hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH--HhccCCcHHH
Confidence 9999999999999999999999887643211 01123344 5689999999
Q ss_pred HHHHHHHHHH
Q 045279 638 LAAMMNEAAM 647 (702)
Q Consensus 638 l~~~~~~a~~ 647 (702)
|..++-....
T Consensus 581 iakLva~vQA 590 (630)
T KOG0742|consen 581 IAKLVASVQA 590 (630)
T ss_pred HHHHHHHHHH
Confidence 9998864443
No 86
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.1e-20 Score=193.02 Aligned_cols=206 Identities=23% Similarity=0.270 Sum_probs=162.0
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcC
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG 505 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g 505 (702)
.+|+.++--.+.|+.+.+-+...++..+.|++.|....+|.|||||||||||+++.|+|+.++..+.-++.++. +
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v-----~ 272 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEV-----K 272 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccc-----c
Confidence 57888888899999999999999999999999999999999999999999999999999999999988887664 2
Q ss_pred chHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc-----h--HHHHHHHHHHHhhhCCCCCC--cEEEEEecCCCC
Q 045279 506 ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG-----W--VVERLLNQLLIELDGADKRK--GVFVIGATNRPD 576 (702)
Q Consensus 506 ~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~-----~--~~~~~~~~ll~~l~~~~~~~--~~~vI~atn~~~ 576 (702)
.... ++.++-.+. +.+||+|.+||.-..-+..... . ...=.++-||+.+||.-..+ --|||+|||..+
T Consensus 273 ~n~d-Lr~LL~~t~--~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 273 LDSD-LRHLLLATP--NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred CcHH-HHHHHHhCC--CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2222 778876553 5579999999987653322111 1 12345788999999974443 678899999999
Q ss_pred ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHH
Q 045279 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAM 641 (702)
Q Consensus 577 ~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~ 641 (702)
.||||++||||+|.+|+++.=+.++...++..++.-.. ...-++.+.........+.||+...
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHH
Confidence 99999999999999999999999999999999987643 2233344442112235578887753
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=6.5e-20 Score=176.10 Aligned_cols=202 Identities=26% Similarity=0.358 Sum_probs=128.8
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~ 201 (702)
+|+|++|+++++..+.-.+...... -.+..++|||||||+||||||+.||++++.+|..+++..+.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~------ 87 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE------ 87 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh------
Confidence 8999999999999987555332221 12346899999999999999999999999999988875432
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
....+..++.... ...||||||||.+.... .+.|+..|++..-.+--|.+......... -.++.+|
T Consensus 88 k~~dl~~il~~l~--~~~ILFIDEIHRlnk~~-----------qe~LlpamEd~~idiiiG~g~~ar~~~~~-l~~FTli 153 (233)
T PF05496_consen 88 KAGDLAAILTNLK--EGDILFIDEIHRLNKAQ-----------QEILLPAMEDGKIDIIIGKGPNARSIRIN-LPPFTLI 153 (233)
T ss_dssp SCHHHHHHHHT----TT-EEEECTCCC--HHH-----------HHHHHHHHHCSEEEEEBSSSSS-BEEEEE-----EEE
T ss_pred hHHHHHHHHHhcC--CCcEEEEechhhccHHH-----------HHHHHHHhccCeEEEEeccccccceeecc-CCCceEe
Confidence 1244455555543 45699999999987543 34588889876542221211110000001 1238899
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~ 354 (702)
|||+....+++.|+. ||.....+..++.++...|+......+.+..+.+ ...+|+.+.| +++-..+++++
T Consensus 154 gATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 154 GATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp EEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred eeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 999999999999999 9988889999999999999998887777665444 5567777776 66655555443
No 88
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.83 E-value=7e-20 Score=187.00 Aligned_cols=232 Identities=22% Similarity=0.311 Sum_probs=165.8
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+.++++++|++.+...-. .+... +......+++||||||||||++|++||...+.+|..+++.
T Consensus 19 RP~~lde~vGQ~HLlg~~~-~lrr~---------v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------ 82 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGK-PLRRA---------VEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------ 82 (436)
T ss_pred CCCCHHHhcChHhhhCCCc-hHHHH---------HhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------
Confidence 3457788888887653211 11111 1123456799999999999999999999999999999873
Q ss_pred cCchHHHHHHHHHHHHhCC----CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec--CCCCc
Q 045279 504 VGESELAVRTLFSRARTCS----PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT--NRPDV 577 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~----~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at--n~~~~ 577 (702)
-.+.+.+|.++++|+... .-|||+|||+.+. +.-+..||-.|+ ...+++|+|| |.-..
T Consensus 83 -~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn-----------K~QQD~lLp~vE----~G~iilIGATTENPsF~ 146 (436)
T COG2256 83 -TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN-----------KAQQDALLPHVE----NGTIILIGATTENPSFE 146 (436)
T ss_pred -cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC-----------hhhhhhhhhhhc----CCeEEEEeccCCCCCee
Confidence 345678999999995432 4799999999999 555677777775 5678888887 55668
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhc--cCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR--KKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~--~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
+.+|+++ |+ .++++.+.+.++...+++.-+. +.++.. .+.++.-+.. +.-..+++|.|.+++..-+.+.....
T Consensus 147 ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~-~l~~~s~GD~R~aLN~LE~~~~~~~~ 222 (436)
T COG2256 147 LNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALD-YLVRLSNGDARRALNLLELAALSAEP 222 (436)
T ss_pred ecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHH-HHHHhcCchHHHHHHHHHHHHHhcCC
Confidence 9999998 88 5889999999999998888332 333331 1222222211 11256788999988744433322211
Q ss_pred hhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 655 ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 655 ~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.. .++.+++++.+++..+.....+..+|..+++..++
T Consensus 223 ---------~~-~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKS 259 (436)
T COG2256 223 ---------DE-VLILELLEEILQRRSARFDKDGDAHYDLISALHKS 259 (436)
T ss_pred ---------Cc-ccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHh
Confidence 11 34589999999999999999999999999999886
No 89
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.83 E-value=5.4e-20 Score=168.36 Aligned_cols=131 Identities=47% Similarity=0.787 Sum_probs=115.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhC-CceEEechhhHhhhcchhhhHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA-PSIVFIDEIDAIASKRENLQRE 239 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 239 (702)
|||+||||||||++|+.+|+.++.+++.+++..+.+.+.+.....+..+|..+.... |+||||||+|.+....+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998899999999999999998887 9999999999999887444556
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCC
Q 045279 240 MERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGV 308 (702)
Q Consensus 240 ~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~ 308 (702)
....++..|+..++.... ...+++||++||.++.++++++| +||+..|.++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~----------------~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSS----------------KNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTT----------------TSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeeccccccc----------------ccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 677888899999987543 23459999999999999999997 79999998873
No 90
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-19 Score=197.25 Aligned_cols=249 Identities=24% Similarity=0.253 Sum_probs=173.0
Q ss_pred HHHHhhhhhccccchhhhhhhhhcc-----ccccccccccccccchhhhhhhhhhhhhcCC--CCCCcccccCCC-----
Q 045279 52 DLMKSMLRDSYSESKITRRKSEEKN-----IEFEVMPRKIDLVNAKSREVEMKKEESVKGG--MGLGAEELKGKE----- 119 (702)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~----- 119 (702)
..|+.++|++|..+|.+..+++... .+++...+++..........++...|..+.. .+.+.+...-..
T Consensus 220 ~~meK~QREyyL~EQlKaIqkELG~~~d~~~e~~~~~~kie~~~~p~evk~k~~~El~kL~~m~~~SaE~~ViRnYlDwl 299 (782)
T COG0466 220 EQMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELREKIEKLKLPKEAKEKAEKELKKLETMSPMSAEATVIRNYLDWL 299 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCccchhHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 4566788999999999999884332 3355555555544433333334434333222 222211111111
Q ss_pred -------------------CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHH
Q 045279 120 -------------------GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 120 -------------------~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 180 (702)
.+--.|..|++++|+++.+++....+.+.+ .+.-++|+||||+|||+|++.||+
T Consensus 300 l~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~-------kGpILcLVGPPGVGKTSLgkSIA~ 372 (782)
T COG0466 300 LDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKL-------KGPILCLVGPPGVGKTSLGKSIAK 372 (782)
T ss_pred HhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccC-------CCcEEEEECCCCCCchhHHHHHHH
Confidence 111267899999999999999765554432 235589999999999999999999
Q ss_pred HhCCCeEEEechhhhcc---------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 181 ETGVPFYKISATEVVSG---------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 181 ~l~~~~~~i~~~~l~~~---------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
.++..|+.++...+.+. |+|+...++-+-+..|...+| +++|||||.|..+...... .+||..
T Consensus 373 al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEV 444 (782)
T COG0466 373 ALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEV 444 (782)
T ss_pred HhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhh
Confidence 99999999998876543 899999998888888877777 9999999999877554322 246665
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
+|--++ ....+++-..+... .+|+||+|+|..+.|+.+|+. |+ .+|.++-++.+|..+|.+.++
T Consensus 445 LDPEQN-~~F~DhYLev~yDL---S~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 445 LDPEQN-NTFSDHYLEVPYDL---SKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCHhhc-CchhhccccCccch---hheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 553222 11112222222222 359999999999999999999 99 889999999999999998765
No 91
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.7e-20 Score=190.55 Aligned_cols=206 Identities=25% Similarity=0.321 Sum_probs=158.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+-+|+.++=-.+.|++|.+.+...+...+.+++.|....+|.|||||||||||+++.|+|+.++..++-++.+++..
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 36999999999999999999999999999999999999999999999999999999999999999999998887532
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH---H----HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR---E----MERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
. ..++.++... ...+||+|+|||+-+.-+..... . ...-.+.-||.++|++...
T Consensus 274 --n-~dLr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs-------------- 334 (457)
T KOG0743|consen 274 --D-SDLRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS-------------- 334 (457)
T ss_pred --c-HHHHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc--------------
Confidence 2 2367777665 34469999999987643222111 0 1223456789998876431
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCC--CCHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPG--FVGADLAA 350 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g--~~~~dl~~ 350 (702)
+.+.=+||.|||..+.|||||+||||+|.+|+++..+.+....+++.++.-.. ...-+.++.+...+ .+++|+..
T Consensus 335 -cg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 335 -CGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred -CCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHH
Confidence 12336888999999999999999999999999999999999999999887643 11123333333222 36766653
No 92
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.6e-19 Score=179.45 Aligned_cols=207 Identities=25% Similarity=0.429 Sum_probs=152.5
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccccccc
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGAS 202 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~ 202 (702)
|++++-......+|..+.+.. .+- ...-.+-+|||||||||||||++|+-||...|..+..+.+.++. ....+.
T Consensus 354 l~~ViL~psLe~Rie~lA~aT-aNT----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qa 427 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIAT-ANT----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQA 427 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHh-ccc----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHH
Confidence 667776666666666544322 111 11234567899999999999999999999999999888887752 233344
Q ss_pred HHHHHHHHHHHHhhCC-ceEEechhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 203 EENIRDLFSKAYRTAP-SIVFIDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 203 ~~~~~~~f~~a~~~~p-~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
...+..+|+.++.... -+|||||.|.++-.+... -++..+..++.||-...+ ...++++
T Consensus 428 VTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-------------------qSrdivL 488 (630)
T KOG0742|consen 428 VTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-------------------QSRDIVL 488 (630)
T ss_pred HHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-------------------cccceEE
Confidence 5678999999987654 588999999987665442 345556667776654322 1234888
Q ss_pred EEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC------------------------C---cccH
Q 045279 281 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE------------------------G---SFDL 333 (702)
Q Consensus 281 I~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~------------------------~---~~~~ 333 (702)
+.+||.|+.+|.++-. ||+.+|+||+|..++|..+|..++.++-.. . ...+
T Consensus 489 vlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~ 566 (630)
T KOG0742|consen 489 VLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKC 566 (630)
T ss_pred EeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHH
Confidence 8999999999999988 999999999999999999998877654211 0 0125
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHH
Q 045279 334 VKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 334 ~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+.|..|+||+|++|..|+....
T Consensus 567 ~EaAkkTeGfSGREiakLva~vQ 589 (630)
T KOG0742|consen 567 SEAAKKTEGFSGREIAKLVASVQ 589 (630)
T ss_pred HHHHHhccCCcHHHHHHHHHHHH
Confidence 66889999999999999876543
No 93
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.78 E-value=4.6e-18 Score=198.93 Aligned_cols=232 Identities=20% Similarity=0.265 Sum_probs=165.9
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc--------
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL-------- 500 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~-------- 500 (702)
+++.|++.+++.+.+++...... +...+.+++|+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 45889999999988866544211 122344799999999999999999999999999999765432
Q ss_pred -ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC-----C--------CCCCcE
Q 045279 501 -NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG-----A--------DKRKGV 566 (702)
Q Consensus 501 -~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~-----~--------~~~~~~ 566 (702)
..|+|.....+.+.|..+....| ||||||||.+.+..+.+ ..+.||..||. + ....++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 35788877778888888876555 89999999998643221 23455555542 1 122578
Q ss_pred EEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc-----cCCCC------CCCCHHHHhhhhcCCCCCH
Q 045279 567 FVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR-----KKPID------DSVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 567 ~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~-----~~~~~------~~~~~~~la~~~~~~~~sg 635 (702)
++|+|||.++.+++++++ ||+ +|.|+.|+.+++..|++.++. ...+. .+..+..++. .++..+..
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~ 540 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIK-YYTREAGV 540 (775)
T ss_pred EEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHH-hcChhcCC
Confidence 999999999999999999 995 889999999999999988762 22221 1234556665 46777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCccccHHHHHHHHhh
Q 045279 636 ADLAAMMNEAAMAALEDKLISSK-SSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~-~~~~~~~~~i~~~d~~~al~~ 679 (702)
++|++.+...+..+..+...... .........|+.++++..+..
T Consensus 541 R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~ 585 (775)
T TIGR00763 541 RNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGK 585 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCc
Confidence 99999888888777666553221 111122357888888877654
No 94
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.77 E-value=9.1e-18 Score=161.37 Aligned_cols=188 Identities=25% Similarity=0.357 Sum_probs=122.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+.++++++|++.++..+.-.+..... ...+..++|||||||+|||++|+.+|++++.+|..++++.+..
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~--------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k-- 88 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKK--------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK-- 88 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHC--------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S--
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHh--------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh--
Confidence 355789999999999887655543321 1234568999999999999999999999999999888765322
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEE
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVF 567 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~ 567 (702)
...+..++... ....||||||||.+. ...+..|+..|++.. .-.+..
T Consensus 89 ----~~dl~~il~~l--~~~~ILFIDEIHRln-----------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 89 ----AGDLAAILTNL--KEGDILFIDEIHRLN-----------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp ----CHHHHHHHHT----TT-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred ----HHHHHHHHHhc--CCCcEEEEechhhcc-----------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 12333444443 256799999999999 788888899888632 113478
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHH
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~ 643 (702)
+|+||++...+.+.+.. ||..+..+..|+.++..+|++.-....++.-+.+ ...+|. .+.| +.+-.-++++
T Consensus 152 ligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~--rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIAR--RSRG-TPRIANRLLR 223 (233)
T ss_dssp EEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHH--CTTT-SHHHHHHHHH
T ss_pred EeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH--hcCC-ChHHHHHHHH
Confidence 99999999999999988 9998889999999999999998877766654332 455663 2323 4444444444
No 95
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=1.1e-18 Score=172.27 Aligned_cols=184 Identities=26% Similarity=0.313 Sum_probs=149.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~ 191 (702)
-|+.++--..+|+++..++...++..+....-. +...+-+||+||||||||+|++++|+.+. ..++++|+
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 478888778899999988876665543322211 34556799999999999999999999983 45789999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhh---CC--ceEEechhhHhhhcchhh----hHHHHHHHHHHHHHHHhhhccccCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRT---AP--SIVFIDEIDAIASKRENL----QREMERRIVTQLMTCMDESHRLVQPG 262 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~---~p--~il~iDEid~l~~~~~~~----~~~~~~~~~~~ll~~ld~~~~~~~~~ 262 (702)
..+.++|.+++.+.+..+|++.... .. ..++|||++++...+.+. .....-|+++++|+++|.+..
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~----- 294 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKR----- 294 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhcc-----
Confidence 9999999999999999999887642 22 256799999999877443 234457899999999998765
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 263 DQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 263 ~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
..+|++++|+|-.+.||.|+-. |-|-+.++.+|+...+.+|++..+..
T Consensus 295 ------------~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 295 ------------YPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred ------------CCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHH
Confidence 5679999999999999999988 99999999999999999999876644
No 96
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.77 E-value=9e-18 Score=163.83 Aligned_cols=205 Identities=24% Similarity=0.318 Sum_probs=150.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+-+|++.+|++++|++|.-.+.....+. ....|+||+||||.||||||+.||++++..+...++..+
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l----- 88 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL----- 88 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc-----
Confidence 3389999999999999987665543332 345789999999999999999999999999988777665
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
+....+..++.... ..+||||||||.+.+.- -.-|...|+++..-+.-|.+-........- ..+.
T Consensus 89 -eK~gDlaaiLt~Le--~~DVLFIDEIHrl~~~v-----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldL-ppFT 153 (332)
T COG2255 89 -EKPGDLAAILTNLE--EGDVLFIDEIHRLSPAV-----------EEVLYPAMEDFRLDIIIGKGPAARSIRLDL-PPFT 153 (332)
T ss_pred -cChhhHHHHHhcCC--cCCeEEEehhhhcChhH-----------HHHhhhhhhheeEEEEEccCCccceEeccC-CCee
Confidence 23455566666643 44699999999998543 234777788776544333332221211222 2388
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a 355 (702)
+||||++...+...|+. ||.....+..++.++..+|+......+.+..+.+ ...+|+...| ++|-..++++++
T Consensus 154 LIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 154 LIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred EeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999998887777765544 5567777666 555444554443
No 97
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.75 E-value=2.3e-17 Score=168.67 Aligned_cols=147 Identities=29% Similarity=0.500 Sum_probs=117.5
Q ss_pred CCCcccccCHHHHHHH---HHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEE---LKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~---l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+-++++++|+++.+.. |...+ ....-.+++|||||||||||||+.||+.++..|..+++..
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 3389999999998743 33333 1233467999999999999999999999999999998764
Q ss_pred ccccccHHHHHHHHHHHHhh----CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRT----APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..-+.++.+++.|... ...||||||||.+....|. .||..++
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD-----------~lLp~vE------------------- 129 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQD-----------ALLPHVE------------------- 129 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhh-----------hhhhhhc-------------------
Confidence 2346789999999543 2479999999999866543 4777776
Q ss_pred CCCCeEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 273 SKPGYVLVIGAT--NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 273 ~~~~~v~vI~at--n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
.|.|++|||| |+.-.+.+++++ |. .++.+.+.+.++...++...
T Consensus 130 --~G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 130 --NGTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred --CCeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHH
Confidence 3569999988 556699999999 88 77999999999999999873
No 98
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.2e-17 Score=178.22 Aligned_cols=176 Identities=25% Similarity=0.332 Sum_probs=135.2
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-------
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS------- 196 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~------- 196 (702)
+|..||+++|+++.+.+...... |-..+.-++|+||||+|||+++++||..+|..|+.++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 67899999999999988654333 3345667999999999999999999999999999998876643
Q ss_pred --ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCCCCCC
Q 045279 197 --GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR--LVQPGDQKSKSDASD 272 (702)
Q Consensus 197 --~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~~~~~~~~~~~~~ 272 (702)
.|+|+...++-+.+......+| +++|||||.+....+.... .+||..||--++ |.++ .-.....
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDH---YLdVp~D- 551 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDH---YLDVPVD- 551 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhh---ccccccc-
Confidence 3899999998888888877777 8999999999854333221 235555553221 1111 1111111
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhc
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR 323 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~ 323 (702)
-.+|++|||+|..+.|+++|+. |+ .+|.++-|..+|...|.+.++-
T Consensus 552 --LSkVLFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 552 --LSKVLFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred --hhheEEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhh
Confidence 1359999999999999999999 99 8899999999999999987763
No 99
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=1.5e-17 Score=194.54 Aligned_cols=217 Identities=23% Similarity=0.229 Sum_probs=150.9
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh--------
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV-------- 195 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~-------- 195 (702)
++++|++++|+.+.+.+....... ...+.++||+||||||||++|++||+.++.+++.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 458999999999998776544332 12334799999999999999999999999999998776432
Q ss_pred -cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCCCCCC
Q 045279 196 -SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR--LVQPGDQKSKSDASD 272 (702)
Q Consensus 196 -~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~~~~~~~~~~~~~ 272 (702)
..|.|.....+...|..+....| |+||||||.+....+.. ....|+..++..+. +.+... +...
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~-----~~~~ 459 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYL-----DVPF 459 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccC-----Ccee
Confidence 24667777777777877755555 89999999998643321 13456666664211 111100 0000
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhc-----CcccC-----C-cccHHHHHh-hC
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR-----NLRVE-----G-SFDLVKIAR-ST 340 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~-----~~~~~-----~-~~~~~~la~-~t 340 (702)
.-+++++|+|||.++.+++++++ || .+|.|+.|+.+++.+|++.++. ...+. . +..+..+++ .+
T Consensus 460 -d~s~v~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 460 -DLSKVIFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred -ccCCEEEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 12458999999999999999999 99 6899999999999999987652 11111 1 112444444 44
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 341 PGFVGADLAALANKAGNLAMKRII 364 (702)
Q Consensus 341 ~g~~~~dl~~l~~~a~~~a~~r~~ 364 (702)
..+..|+|+..+...++..+.++.
T Consensus 536 ~e~g~R~l~r~i~~~~~~~~~~~~ 559 (775)
T TIGR00763 536 REAGVRNLERQIEKICRKAAVKLV 559 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHHHH
Confidence 556678888888887777766554
No 100
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=9.1e-17 Score=187.15 Aligned_cols=244 Identities=24% Similarity=0.267 Sum_probs=168.3
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
..++++.|.+.....+.+.+ ......+++|+||||||||++|+.+|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L-------------~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVL-------------CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHH-------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 45678888887766554433 12345688999999999999999999987 67889999
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 496 GPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
++.+. .+|.|+.+..++.+|+.+....++||||||+|.+.+.+...++. ..+.+.|...|. ...+.+|++||
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~----~g~i~~IgaTt 319 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS----SGKLRCIGSTT 319 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----CCCeEEEEecC
Confidence 88887 57999999999999999987788999999999999765432221 233444555553 46789999998
Q ss_pred CC-----CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-----CCCCHHHHhhhhcCCCC-----CHHHH
Q 045279 574 RP-----DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-----DSVDLHTIAQSKFCENL-----SGADL 638 (702)
Q Consensus 574 ~~-----~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~la~~~~~~~~-----sg~dl 638 (702)
.. ...|+++.| ||. .|.++.|+.+++..|++......... .+..+..++ .++..| -..-.
T Consensus 320 ~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~--~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 320 YEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAV--ELSARYINDRFLPDKA 394 (731)
T ss_pred HHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHH--HhhhcccccccCCHHH
Confidence 63 357999999 997 79999999999999999876653211 222334444 223333 23334
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC--C--CCCHHHHHHHHHHHHHHh
Q 045279 639 AAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS--P--SVSELQIQRYKTLSETFK 700 (702)
Q Consensus 639 ~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~--~--~~~~~~~~~~~~~~~~~~ 700 (702)
-.++.+|+....-+. .......|+.+|+..++.... | .++..+...+..+.+.+.
T Consensus 395 i~lld~a~a~~~~~~-------~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~ 453 (731)
T TIGR02639 395 IDVIDEAGASFRLRP-------KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLK 453 (731)
T ss_pred HHHHHHhhhhhhcCc-------ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHh
Confidence 456666653211110 001234699999999998874 2 334455666666655544
No 101
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.72 E-value=3.1e-16 Score=166.43 Aligned_cols=216 Identities=21% Similarity=0.256 Sum_probs=151.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+..|++++|.+..++.+...+.... ....++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 4578999999999998877664321 1124567899999999999999999999999888777655432
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEE
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFV 568 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~v 568 (702)
....+..++... ..++||||||+|.+.. ...+.+...|+... ....+.+
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~-----------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~l 153 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSP-----------VVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTL 153 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcch-----------HHHHHHHHHHHhcceeeeeccCccccceeecCCCceE
Confidence 122344444433 3578999999999873 22233334443221 1124678
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
|++||++..+++++.+ ||...+.|++|+.+++.+|++..+...++..+ ..++.++ ..+.|.. +.+.++++.+..
T Consensus 154 i~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia--~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 154 IGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIA--RRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred EeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH--HHcCCCc-hHHHHHHHHHHH
Confidence 9999999999999988 99989999999999999999998887655433 2356666 3454533 666677766554
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCC
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
.+..+. ...|+.+++..++......
T Consensus 229 ~a~~~~-----------~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 229 FAQVKG-----------DGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHcC-----------CCCCCHHHHHHHHHHhCCC
Confidence 444331 1268888999988876543
No 102
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.72 E-value=2e-16 Score=170.09 Aligned_cols=238 Identities=19% Similarity=0.216 Sum_probs=162.6
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHH---cCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcCc
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEE---FGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGE 506 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~---~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g~ 506 (702)
++|++.+++.+..++...++....... -...+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999997776554433221110 01124578999999999999999999999999999999988764 58887
Q ss_pred hHHH-HHHHHHH----HHhCCCeEEEEeCcchhhcccCCCC--ch-HHHHHHHHHHHhhhCCC-----------CCCcEE
Q 045279 507 SELA-VRTLFSR----ARTCSPCILFFDEVDALTTKRGKEG--GW-VVERLLNQLLIELDGAD-----------KRKGVF 567 (702)
Q Consensus 507 ~~~~-~~~~f~~----a~~~~~~vl~iDEid~l~~~r~~~~--~~-~~~~~~~~ll~~l~~~~-----------~~~~~~ 567 (702)
.... +..++.. .....++||||||||.+..++...+ .+ ....+++.||+.|++.. ...+.+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 5443 4444432 2234789999999999987632111 11 12468899999998631 122355
Q ss_pred EEEecCCCC----------------------------------------------------ccCccccCCCccceEEEcC
Q 045279 568 VIGATNRPD----------------------------------------------------VMDRAVLRPGRFGKLLYVP 595 (702)
Q Consensus 568 vI~atn~~~----------------------------------------------------~ld~a~~r~gRf~~~i~~~ 595 (702)
+|+|+|-.. .+.|+|+. |+|.+++|.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecC
Confidence 666655400 13555655 999999999
Q ss_pred CCCHHHHHHHHHH----Hhc-------cCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 045279 596 LPTPDERGLILEA----LAR-------KKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSS 661 (702)
Q Consensus 596 ~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~ 661 (702)
+++.+++.+|+.. +++ ..++. .+.-++.|+...+..+|.++.|+++++..+...+.+.... .
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~----~ 386 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSR----E 386 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcccc----C
Confidence 9999999999972 332 22222 2334677887767788899999999999988888765431 1
Q ss_pred CCCCccccHHHHH
Q 045279 662 DVTPFTIKLTHFE 674 (702)
Q Consensus 662 ~~~~~~i~~~d~~ 674 (702)
......|+.+.+.
T Consensus 387 ~~~~v~I~~~~v~ 399 (412)
T PRK05342 387 DVEKVVITKEVVE 399 (412)
T ss_pred CCceEEECHHHhc
Confidence 2334567777765
No 103
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=3.4e-16 Score=164.86 Aligned_cols=211 Identities=21% Similarity=0.269 Sum_probs=143.6
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGE 506 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~ 506 (702)
+|++++|++.+++.+..++..... ....+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM--------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 588999999999988876643311 1234567999999999999999999999988876665443221
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEEEE
Q 045279 507 SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFVIG 570 (702)
Q Consensus 507 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~vI~ 570 (702)
...+...+... ..+.+|||||++.+.+ .....|+..|+... ....+++|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~-----------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSP-----------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCH-----------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222333222 3568999999999883 33333444443211 113378899
Q ss_pred ecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 571 ATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 571 atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
+||++..+++++.+ ||...+.+++|+.+++.++++..+.......+ ..++.++ ..+.|+. +.+.+++..+...|
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia--~~~~G~p-R~~~~ll~~~~~~a 209 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIA--RRSRGTP-RIANRLLRRVRDFA 209 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHH--HHhCCCc-chHHHHHHHHHHHH
Confidence 99999999999988 99889999999999999999988876554432 3355666 3455544 55556666554333
Q ss_pred HHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 650 LEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.... ...|+.+++..++..+
T Consensus 210 ~~~~-----------~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 210 QVRG-----------QKIINRDIALKALEML 229 (305)
T ss_pred HHcC-----------CCCcCHHHHHHHHHHh
Confidence 2221 1258888888888875
No 104
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=5.1e-16 Score=178.35 Aligned_cols=245 Identities=23% Similarity=0.270 Sum_probs=168.2
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
-.++.+.|-+.....+.+.+.. ....++||+||||||||++|+.+|... +..++.++
T Consensus 183 g~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred CCCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 3456778877776666553322 235678999999999999999999864 45666666
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 496 GPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
...++ .+|.|+.+..++.+|..+....++||||||+|.+.+.+....+. .++.+.|...+ ....+.||++||
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~--~d~~nlLkp~L----~~g~i~vIgATt 323 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLL----SSGKIRVIGSTT 323 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH--HHHHHHHHHHH----hCCCeEEEecCC
Confidence 66665 46889999999999999888788999999999998766432221 22333333333 356789999999
Q ss_pred CCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhh--------hhcCCCCCHHHHHH
Q 045279 574 RPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ--------SKFCENLSGADLAA 640 (702)
Q Consensus 574 ~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~--------~~~~~~~sg~dl~~ 640 (702)
.++ ..|+++.| ||+ .|.++.|+.+++..|++.+..++....++.+...|. ..+...+-......
T Consensus 324 ~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 324 YQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred hHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 865 57999999 996 799999999999999999877766665555544332 22334455567888
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC----CCCHHHHHHHHHHHHHH
Q 045279 641 MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP----SVSELQIQRYKTLSETF 699 (702)
Q Consensus 641 ~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~----~~~~~~~~~~~~~~~~~ 699 (702)
++.+|+...-- .. .......|+.+|+.+++.+..- .+...+.+.+..+...+
T Consensus 401 lldea~a~~~~--~~-----~~~~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L 456 (758)
T PRK11034 401 VIDEAGARARL--MP-----VSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRL 456 (758)
T ss_pred HHHHHHHhhcc--Cc-----ccccccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHh
Confidence 89988853211 00 0011225888999998887653 12233444444554443
No 105
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.69 E-value=4.6e-16 Score=155.90 Aligned_cols=232 Identities=22% Similarity=0.328 Sum_probs=155.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe---EEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN---FIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~---~~~i~~~~l~~ 501 (702)
+.++++.+|++.+... ...+...+ ....-.+++|+||||||||+||+.|+...+.+ |+++++..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~i---------eq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLI---------EQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHH---------HcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc---
Confidence 4466777777765443 12121111 11233578999999999999999999987655 77777633
Q ss_pred cCcCchHHHHHHHHHHHHh-----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec--CC
Q 045279 502 KYVGESELAVRTLFSRART-----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT--NR 574 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at--n~ 574 (702)
.....+|.+|+.+.. ....|||||||+.+. +.-+..||-.++ ...+++|+|| |.
T Consensus 201 ----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN-----------ksQQD~fLP~VE----~G~I~lIGATTENP 261 (554)
T KOG2028|consen 201 ----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN-----------KSQQDTFLPHVE----NGDITLIGATTENP 261 (554)
T ss_pred ----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-----------hhhhhcccceec----cCceEEEecccCCC
Confidence 445678999988753 456899999999998 444555655543 5678889887 55
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc---c--C---CCCC------CCCHHHHhhhhcCCCCCHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---K--K---PIDD------SVDLHTIAQSKFCENLSGADLAA 640 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~---~--~---~~~~------~~~~~~la~~~~~~~~sg~dl~~ 640 (702)
...+..++++ ||. ++.......+....||..-+. + . ++.. +.-++.++ ..+.+|.|.
T Consensus 262 SFqln~aLlS--RC~-VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla------~lsdGDaR~ 332 (554)
T KOG2028|consen 262 SFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLA------YLSDGDARA 332 (554)
T ss_pred ccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHH------HhcCchHHH
Confidence 5689999999 994 667777777887778776333 1 1 1111 11234444 445568777
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 641 MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 641 ~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.++..-+. +......... .+...++.+|+.++|+...-.+...+.++|..+++.+++
T Consensus 333 aLN~Lems-~~m~~tr~g~---~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKS 389 (554)
T KOG2028|consen 333 ALNALEMS-LSMFCTRSGQ---SSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKS 389 (554)
T ss_pred HHHHHHHH-HHHHHhhcCC---cccceecHHHHHHHHhhccceecccchhHHHHHHHHHHh
Confidence 76643332 2222211111 134579999999999999988999999999999998875
No 106
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.68 E-value=1e-15 Score=161.21 Aligned_cols=204 Identities=26% Similarity=0.346 Sum_probs=137.2
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~ 201 (702)
+|++++|+++++++|...+...... -....+++|+||||||||++|+++|+.++..+..+++..+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 7999999999999998777432211 123567999999999999999999999998877665543221
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
...+...+... ..+.+|||||+|.+.... ...|+..+++....+-.+............+ .+.+|
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li 133 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLP-PFTLV 133 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCC-CeEEE
Confidence 12233333332 346799999999887432 1235555554433221111111111111122 27899
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
++||.+..+++++++ ||...+.+++|+.+++.+++...+.......+. .+..+++.+.|+. +.+..++..+.
T Consensus 134 ~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 134 GATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred EecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 999999999999999 998888999999999999999887765444333 3567888887754 55566666543
No 107
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1e-15 Score=164.76 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=135.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+-+|++++|++.++..|...+.. -+.++.+||+|||||||||+|+.+|+.+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKS------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 34899999999999998877632 1234569999999999999999999998753
Q ss_pred ----------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 186 ----------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 186 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
++.+++.. ......++.+.+.+. .+...|+||||+|.|... ..+.||..
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~-----------A~NALLKt 144 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ-----------SFNALLKT 144 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH-----------HHHHHHHH
Confidence 22222211 111234455544443 334569999999988642 35568888
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~ 331 (702)
+++ .++++++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.++..+....+....
T Consensus 145 LEE-------------------Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~ 202 (484)
T PRK14956 145 LEE-------------------PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQ 202 (484)
T ss_pred hhc-------------------CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 875 35679999999999999999999 99 679999999999999999888776554333
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+..+++...| +.|+..++++.+.
T Consensus 203 eAL~~Ia~~S~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 203 EGLFWIAKKGDG-SVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 35667766666 6777777776654
No 108
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.68 E-value=3.5e-15 Score=145.84 Aligned_cols=215 Identities=21% Similarity=0.269 Sum_probs=151.2
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+..|++.+|++.+|..+.-++...... ....-|+|||||||.||||+|..+|++++.++-..+++-+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK-- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK-- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC--
Confidence 3567899999999999998777655322 245568999999999999999999999999988887766532
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEE
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVF 567 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~ 567 (702)
...+..++... .+.+||||||||.+. ..+-..|...|+++. .-....
T Consensus 91 ----~gDlaaiLt~L--e~~DVLFIDEIHrl~-----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 91 ----PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred ----hhhHHHHHhcC--CcCCeEEEehhhhcC-----------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 23344555443 356899999999998 455555566677632 123578
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
+|+||.+.-.|...+.. ||..+..+..|+.++...|+....+...+.-+. ....+|.++ .| +.+=.-+++++.-
T Consensus 154 LIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rS--RG-TPRIAnRLLrRVR 228 (332)
T COG2255 154 LIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRS--RG-TPRIANRLLRRVR 228 (332)
T ss_pred EeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhc--cC-CcHHHHHHHHHHH
Confidence 99999999999998877 999999999999999999999988777665433 345666432 22 3333333333322
Q ss_pred HHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 647 MAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
-.|.-.. ...|+.+-..+|+....
T Consensus 229 Dfa~V~~-----------~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 229 DFAQVKG-----------DGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHhc-----------CCcccHHHHHHHHHHhC
Confidence 2222111 12566666777776653
No 109
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.68 E-value=1.4e-15 Score=176.21 Aligned_cols=218 Identities=20% Similarity=0.219 Sum_probs=145.3
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-------
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS------- 196 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~------- 196 (702)
.+++|++++|+++.+.+....... -..+..++|+||||||||++++.+|+.++.+++.++++....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~-------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVN-------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcc-------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 458999999999998886443221 124467999999999999999999999999999888776432
Q ss_pred --ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 197 --GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 197 --~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.|.|.....+...+..+....| |+||||||.+....+.. ....|+..+|.-+......... +... .
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~---~~~~-d 462 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYL---EVDY-D 462 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccc---cccc-c
Confidence 2556666555555555443344 89999999998653321 2345777776422111100000 0000 1
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-----cccC-----Cccc-HHHHH-hhCCC
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-----LRVE-----GSFD-LVKIA-RSTPG 342 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-----~~~~-----~~~~-~~~la-~~t~g 342 (702)
-++|++|+|+|.. .|+|+|++ || .+|.+..++.++..+|++.++.. .... .... +..++ ..+..
T Consensus 463 ls~v~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e 538 (784)
T PRK10787 463 LSDVMFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTRE 538 (784)
T ss_pred CCceEEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcc
Confidence 2459999999988 59999999 99 68999999999999999877631 1111 1111 33343 33455
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 045279 343 FVGADLAALANKAGNLAMKRII 364 (702)
Q Consensus 343 ~~~~dl~~l~~~a~~~a~~r~~ 364 (702)
+-.|.+++.+...++..+.+.+
T Consensus 539 ~GaR~LeR~I~~i~r~~l~~~~ 560 (784)
T PRK10787 539 AGVRSLEREISKLCRKAVKQLL 560 (784)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH
Confidence 5668888888877766665544
No 110
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.68 E-value=1.1e-15 Score=162.30 Aligned_cols=206 Identities=27% Similarity=0.328 Sum_probs=139.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.+|++++|++++++.+...+..... .-.+..+++|+||||||||++|+++|+.++..+..+++..+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~---- 88 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE---- 88 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc----
Confidence 34899999999999999876643211 123457899999999999999999999999988777655432
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
....+..++... ..+++|||||||.+....+ ..+...|++....+--+............+ .+.
T Consensus 89 --~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~~-----------e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~ 152 (328)
T PRK00080 89 --KPGDLAAILTNL--EEGDVLFIDEIHRLSPVVE-----------EILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFT 152 (328)
T ss_pred --ChHHHHHHHHhc--ccCCEEEEecHhhcchHHH-----------HHHHHHHHhcceeeeeccCccccceeecCC-Cce
Confidence 123344455443 3467999999998864221 124445554322111111100000001112 378
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
+|++||.+..+++++++ ||...+.|+.|+.+++.+|+............. .+..+++.+.|.. +.+..+++.+.
T Consensus 153 li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~ 227 (328)
T PRK00080 153 LIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVR 227 (328)
T ss_pred EEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHH
Confidence 89999999999999999 998889999999999999999888776655443 3667888877744 66666665543
No 111
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=3.8e-16 Score=168.01 Aligned_cols=180 Identities=19% Similarity=0.243 Sum_probs=132.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
.+..|++++|++.+...|...+... ..+..+||+||+|||||++|+++|+.+++.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s 80 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS 80 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH
Confidence 3467899999999988877765421 334568999999999999999999988652
Q ss_pred -----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 491 -----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 491 -----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++.++++. ..+...+|.+.+.+. ...+.|+||||+|.+. ...++.||.
T Consensus 81 C~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls-----------~~A~NALLK 143 (484)
T PRK14956 81 CLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT-----------DQSFNALLK 143 (484)
T ss_pred HHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC-----------HHHHHHHHH
Confidence 33333321 112345666655543 3356799999999998 788999999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~s 634 (702)
.|+. ...++++|++|+.++.|.+++++ || .++.|..++.++....++..+.+.++.. +..+..++ .++
T Consensus 144 tLEE--Pp~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia------~~S 212 (484)
T PRK14956 144 TLEE--PPAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA------KKG 212 (484)
T ss_pred Hhhc--CCCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHc
Confidence 9975 34678888999999999999998 99 4788999999888888988888766542 23345555 345
Q ss_pred HHHHHHHHH
Q 045279 635 GADLAAMMN 643 (702)
Q Consensus 635 g~dl~~~~~ 643 (702)
+|++|.+++
T Consensus 213 ~Gd~RdAL~ 221 (484)
T PRK14956 213 DGSVRDMLS 221 (484)
T ss_pred CChHHHHHH
Confidence 566666555
No 112
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.68 E-value=8.8e-16 Score=163.99 Aligned_cols=239 Identities=18% Similarity=0.211 Sum_probs=161.1
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcC----C-CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cC
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFG----V-DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KY 503 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~----~-~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~ 503 (702)
.++|++.+++.+..++...++......... . ....++||+||||||||++|+++|..++.+|..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 479999999988776654433321100000 1 12468999999999999999999999999999999888753 58
Q ss_pred cCchH-HHHHHHHHHH----HhCCCeEEEEeCcchhhcccCCCC-c-h-HHHHHHHHHHHhhhCCC-----------CCC
Q 045279 504 VGESE-LAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKEG-G-W-VVERLLNQLLIELDGAD-----------KRK 564 (702)
Q Consensus 504 ~g~~~-~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~~-~-~-~~~~~~~~ll~~l~~~~-----------~~~ 564 (702)
+|... ..+..++..+ ....++||||||+|.+..++.... . + ....+++.||+.|+|.. ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 88753 3344444322 234678999999999997543211 1 1 11368889999997642 234
Q ss_pred cEEEEEecCCC---------------------------C-----------------------ccCccccCCCccceEEEc
Q 045279 565 GVFVIGATNRP---------------------------D-----------------------VMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 565 ~~~vI~atn~~---------------------------~-----------------------~ld~a~~r~gRf~~~i~~ 594 (702)
+.++|+|+|-. + .+.|+|+. |+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 57888888851 0 13456655 99999999
Q ss_pred CCCCHHHHHHHHHHH----hcc-------CCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 595 PLPTPDERGLILEAL----ARK-------KPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 595 ~~p~~~~r~~il~~~----~~~-------~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
.+.+.+++.+|+... +++ .++. .+.-++.++...+...|.+|.|+.+++...+.++-+....
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~~---- 391 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPSL---- 391 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCCC----
Confidence 999999999998752 322 1221 1233677887767778899999999999888777765431
Q ss_pred CCCCCccccHHHHH
Q 045279 661 SDVTPFTIKLTHFE 674 (702)
Q Consensus 661 ~~~~~~~i~~~d~~ 674 (702)
.......|+.+.+.
T Consensus 392 ~~~~~v~i~~~~v~ 405 (413)
T TIGR00382 392 EDLEKVVITKETVL 405 (413)
T ss_pred CCCcEEEECHHHHc
Confidence 22333456666553
No 113
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=9.3e-16 Score=168.05 Aligned_cols=205 Identities=19% Similarity=0.216 Sum_probs=144.0
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------------- 489 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------- 489 (702)
.+.+|++++|++.+++.|...+... ..+.++||+||||||||++|+++|+.+++
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~ 76 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRA 76 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHH
Confidence 3567899999999988776654321 34566899999999999999999998754
Q ss_pred ----------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 490 ----------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 490 ----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
.++.++++. ..+...+|.+.+.+.. ..+.||||||+|.+. ...++.|+.
T Consensus 77 c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt-----------~~a~~~LLk 139 (472)
T PRK14962 77 CRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT-----------KEAFNALLK 139 (472)
T ss_pred HHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH-----------HHHHHHHHH
Confidence 345554432 1223446666665542 245799999999997 667888998
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~s 634 (702)
.|+... ..+++|++|+.+..+.+++.+ |+. ++.|.+++.++...+++..+...++.- +..++.++. ++
T Consensus 140 ~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~------~s 208 (472)
T PRK14962 140 TLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK------RA 208 (472)
T ss_pred HHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------Hh
Confidence 888543 457777777778899999988 884 899999999999999999887655432 233455662 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 635 GADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 635 g~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++|+|.+++.....+.. .. ..|+.+++..++...
T Consensus 209 ~GdlR~aln~Le~l~~~---~~---------~~It~e~V~~~l~~~ 242 (472)
T PRK14962 209 SGGLRDALTMLEQVWKF---SE---------GKITLETVHEALGLI 242 (472)
T ss_pred CCCHHHHHHHHHHHHHh---cC---------CCCCHHHHHHHHcCC
Confidence 56777666544322111 00 148888888888665
No 114
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.66 E-value=8.5e-16 Score=161.27 Aligned_cols=244 Identities=24% Similarity=0.320 Sum_probs=169.9
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHc-CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcC-c
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEF-GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG-E 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g-~ 506 (702)
-++|++++|+.+.-++............+ .-.+|.++||+||||||||++|+++|..++.+|+.++++.+.. .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 37899999998877665443222211111 1235689999999999999999999999999999999998874 6888 5
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 045279 507 SELAVRTLFSRA-------------------------------------------------------------------- 518 (702)
Q Consensus 507 ~~~~~~~~f~~a-------------------------------------------------------------------- 518 (702)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 667677766655
Q ss_pred -----------------------------------------------------------------------HhCCCeEEE
Q 045279 519 -----------------------------------------------------------------------RTCSPCILF 527 (702)
Q Consensus 519 -----------------------------------------------------------------------~~~~~~vl~ 527 (702)
+....+|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012557999
Q ss_pred EeCcchhhcccCCCCchH-HHHHHHHHHHhhhCC--------CCCCcEEEEEecC----CCCccCccccCCCccceEEEc
Q 045279 528 FDEVDALTTKRGKEGGWV-VERLLNQLLIELDGA--------DKRKGVFVIGATN----RPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 528 iDEid~l~~~r~~~~~~~-~~~~~~~ll~~l~~~--------~~~~~~~vI~atn----~~~~ld~a~~r~gRf~~~i~~ 594 (702)
|||||+++.+......++ ..-+++.||..++|. -..+++++||+.- .|..|-|.|.- ||+.++.+
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L 330 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVEL 330 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEEC
Confidence 999999997653322222 255899999999983 3557888888763 46667777754 99999999
Q ss_pred CCCCHHHHHHHH----HHHh-------ccCCCC---CCCCHHHHhhhhcC-----CCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 595 PLPTPDERGLIL----EALA-------RKKPID---DSVDLHTIAQSKFC-----ENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 595 ~~p~~~~r~~il----~~~~-------~~~~~~---~~~~~~~la~~~~~-----~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
..++.++...|| ..++ +..++. .+..+..+|..... .+..++-|+.++......+.-+.-
T Consensus 331 ~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p- 409 (441)
T TIGR00390 331 QALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAP- 409 (441)
T ss_pred CCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCC-
Confidence 999999999888 2222 222222 23345666655443 566778888888876654443322
Q ss_pred hcCCCCCCCCccccHHHHHHHHhhc
Q 045279 656 SSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 656 ~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
........|+.+.+...+..+
T Consensus 410 ----~~~~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 410 ----DLSGQNITIDADYVSKKLGAL 430 (441)
T ss_pred ----CCCCCEEEECHHHHHhHHHHH
Confidence 122345678888887777665
No 115
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=2.6e-15 Score=164.09 Aligned_cols=219 Identities=25% Similarity=0.362 Sum_probs=148.9
Q ss_pred CccccccCCcccchhh---hHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRHE---FDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
+.++++++|++.+... +...+.. ....+++|+||||||||++|+++|+..+..|+.+++...
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-- 72 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-- 72 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--
Confidence 4567889998887555 5554421 234579999999999999999999999999999987532
Q ss_pred cCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec--CCC
Q 045279 502 KYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT--NRP 575 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at--n~~ 575 (702)
+...++.+++.+. ...+.||||||+|.+. ...++.|+..++. ..+++|++| |..
T Consensus 73 -----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~q~~LL~~le~----~~iilI~att~n~~ 132 (413)
T PRK13342 73 -----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQQDALLPHVED----GTITLIGATTENPS 132 (413)
T ss_pred -----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHHHHHHHHHhhc----CcEEEEEeCCCChh
Confidence 2345666666653 2356899999999987 5667777877763 456667665 334
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC--C-C-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP--I-D-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~--~-~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~ 651 (702)
..+++++++ || .++.|++++.++...+++..+.... . . .+..++.++ .++++|++.+++.....+..
T Consensus 133 ~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~------~~s~Gd~R~aln~Le~~~~~ 203 (413)
T PRK13342 133 FEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALA------RLANGDARRALNLLELAALG 203 (413)
T ss_pred hhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH------HhCCCCHHHHHHHHHHHHHc
Confidence 578999988 98 6889999999999999988776421 1 1 112233444 23455666555433222211
Q ss_pred HHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 652 DKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 652 ~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
. ..|+.+++..+++.........+..+|+.+++..+
T Consensus 204 ---~----------~~It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~k 239 (413)
T PRK13342 204 ---V----------DSITLELLEEALQKRAARYDKDGDEHYDLISALHK 239 (413)
T ss_pred ---c----------CCCCHHHHHHHHhhhhhccCCCccHHHHHHHHHHH
Confidence 1 16899999999887654454444556766665544
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.65 E-value=5.9e-16 Score=152.84 Aligned_cols=192 Identities=20% Similarity=0.275 Sum_probs=138.0
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC------eEEE
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA------NFIH 493 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~------~~~~ 493 (702)
.....+..++++.|++.+++.|...+.. ....++|||||||||||+.|+++|.++.. .+..
T Consensus 27 teKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ 93 (346)
T KOG0989|consen 27 TEKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLE 93 (346)
T ss_pred HHHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhh
Confidence 3344567889999999999988876543 34467899999999999999999998854 3345
Q ss_pred EecccccccCcCchHHHHHHHHHHHHh---------CC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCC
Q 045279 494 IKGPELLNKYVGESELAVRTLFSRART---------CS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR 563 (702)
Q Consensus 494 i~~~~l~~~~~g~~~~~~~~~f~~a~~---------~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 563 (702)
.+.++..+.-++. ..+ .-|++... ++ +.|++|||+|.+. .+.++.|.+.|+.+..
T Consensus 94 lnaSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt-----------sdaq~aLrr~mE~~s~- 158 (346)
T KOG0989|consen 94 LNASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT-----------SDAQAALRRTMEDFSR- 158 (346)
T ss_pred hcccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh-----------HHHHHHHHHHHhcccc-
Confidence 5666654432221 111 22333322 22 3799999999999 8999999999997654
Q ss_pred CcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHH
Q 045279 564 KGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMM 642 (702)
Q Consensus 564 ~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~ 642 (702)
.+.+|..||+.+.|...+.+ |+. .+.|+....+.....|+....+.++.-+.+ ++.++ .++++|||.++
T Consensus 159 -~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~------~~S~GdLR~Ai 228 (346)
T KOG0989|consen 159 -TTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIA------KISDGDLRRAI 228 (346)
T ss_pred -ceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHH------HHcCCcHHHHH
Confidence 55666679999999999988 995 677887777777788888888877764433 45555 45888999877
Q ss_pred HHHHHHH
Q 045279 643 NEAAMAA 649 (702)
Q Consensus 643 ~~a~~~a 649 (702)
.-....+
T Consensus 229 t~Lqsls 235 (346)
T KOG0989|consen 229 TTLQSLS 235 (346)
T ss_pred HHHHHhh
Confidence 6544433
No 117
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=3e-15 Score=166.56 Aligned_cols=186 Identities=22% Similarity=0.269 Sum_probs=137.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++.+++.|...+.. -+..+.+||+||+||||||+++.||+.+++.
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 3899999999999999987621 1334568999999999999999999998652
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.++..+ ......++.+++.+.. +...|+||||+|.|... ..+.||+.|
T Consensus 81 ~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~-----------A~NALLKtL 143 (830)
T PRK07003 81 EIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH-----------AFNAMLKTL 143 (830)
T ss_pred HHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-----------HHHHHHHHH
Confidence 22222211 1123345666665532 34569999999988642 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++. +.++.||.+||.+..|.+.+++ |+ ..+.|..++.++..++|..++....+..+.
T Consensus 144 EEP-------------------P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~e 201 (830)
T PRK07003 144 EEP-------------------PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQ 201 (830)
T ss_pred Hhc-------------------CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHH
Confidence 863 4568999999999999999999 99 779999999999999999988776654433
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.+..+++...| +.++..+++.++...
T Consensus 202 AL~lIA~~A~G-smRdALsLLdQAia~ 227 (830)
T PRK07003 202 ALRLLARAAQG-SMRDALSLTDQAIAY 227 (830)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 35567777766 677777777766543
No 118
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.4e-15 Score=167.21 Aligned_cols=186 Identities=21% Similarity=0.287 Sum_probs=136.8
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
.-+|++|+|++.+++.|.+.+.. -+.++.+||+||+||||||+|+.||+.+++.
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQ------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 33899999999999999987732 1234668999999999999999999999761
Q ss_pred ---------------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHH
Q 045279 186 ---------------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVT 246 (702)
Q Consensus 186 ---------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 246 (702)
++.++..+ ......++.+++.+. .+...|+||||+|.|... ..+
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-----------AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-----------AFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-----------HHH
Confidence 12222211 112344566666543 334569999999988642 345
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc
Q 045279 247 QLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR 326 (702)
Q Consensus 247 ~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~ 326 (702)
.||+.|++ .+++++||.+||.+..|.+.+++ |+ ..+.|..++.++..+.+..++....
T Consensus 143 ALLKTLEE-------------------PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 143 AMLKTLEE-------------------PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred HHHHhhcc-------------------CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcC
Confidence 68888886 35668999999999999999999 98 7799999999999999988877655
Q ss_pred cCCccc-HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 327 VEGSFD-LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 327 ~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+.+ +..+++...| +.++..++++++..
T Consensus 201 i~~d~eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 201 IAHEVNALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred CCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 544333 4556666655 77777777776543
No 119
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.65 E-value=1.8e-15 Score=158.87 Aligned_cols=244 Identities=23% Similarity=0.305 Sum_probs=169.4
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcC-CCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcC-c
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFG-VDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG-E 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g-~ 506 (702)
.++|++.+++.+..++........+..... -..+.++||+||||||||++|+.+|..++.+|+.++++.+.. .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 489999999999877755432221111111 113589999999999999999999999999999999998886 6888 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 045279 507 SELAVRTLFSRAR------------------------------------------------------------------- 519 (702)
Q Consensus 507 ~~~~~~~~f~~a~------------------------------------------------------------------- 519 (702)
.+..++.+|..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5666777766661
Q ss_pred -----------------------------------------------------------------------hCCCeEEEE
Q 045279 520 -----------------------------------------------------------------------TCSPCILFF 528 (702)
Q Consensus 520 -----------------------------------------------------------------------~~~~~vl~i 528 (702)
....+|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 124579999
Q ss_pred eCcchhhcccCCCCchHH-HHHHHHHHHhhhCC--------CCCCcEEEEEecC----CCCccCccccCCCccceEEEcC
Q 045279 529 DEVDALTTKRGKEGGWVV-ERLLNQLLIELDGA--------DKRKGVFVIGATN----RPDVMDRAVLRPGRFGKLLYVP 595 (702)
Q Consensus 529 DEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~--------~~~~~~~vI~atn----~~~~ld~a~~r~gRf~~~i~~~ 595 (702)
||||+++.+.+....+++ .-+++.||..++|. -+++++++||+.- .|+.|-|.|.- ||+.++.+.
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 333 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELD 333 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 999999976533222332 55899999999983 3567888888763 46667788865 999999999
Q ss_pred CCCHHHHHHHHH----HHhc-------cCCCC---CCCCHHHHhhhhcC-----CCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 596 LPTPDERGLILE----ALAR-------KKPID---DSVDLHTIAQSKFC-----ENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 596 ~p~~~~r~~il~----~~~~-------~~~~~---~~~~~~~la~~~~~-----~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.++.++...||. ..++ ..++. .+..++.+|..... .+..++-|+.++........-+.-
T Consensus 334 ~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p-- 411 (443)
T PRK05201 334 ALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAP-- 411 (443)
T ss_pred CCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCC--
Confidence 999999998882 2333 22222 23345667755443 466778888888776654443321
Q ss_pred cCCCCCCCCccccHHHHHHHHhhc
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
........|+.+.+...+..+
T Consensus 412 ---~~~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 412 ---DMSGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred ---CCCCCEEEECHHHHHHHHHHH
Confidence 122344678888777766655
No 120
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.6e-15 Score=164.09 Aligned_cols=216 Identities=22% Similarity=0.296 Sum_probs=149.3
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-----
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN----- 501 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~----- 501 (702)
.-+|-.|++++|+++-+++.-.. =.|...+.-++|+||||+|||++++.+|..++..|++++...+.+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~k-------Lrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGK-------LRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHh-------hcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 34678999999999988775431 113334556889999999999999999999999999998654432
Q ss_pred ----cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHH-----HHHH-hhhCCCCCCcEEEEEe
Q 045279 502 ----KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLN-----QLLI-ELDGADKRKGVFVIGA 571 (702)
Q Consensus 502 ----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~-----~ll~-~l~~~~~~~~~~vI~a 571 (702)
.|+|.....+-+.++++...+| +++|||+|.+...-+++..+..-+++. .|+. .|+-.-.-.+|++|||
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICT 560 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEe
Confidence 3999988888899999998888 889999999984333332222222111 0111 1121224467999999
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC-----CCC-CCCCHHHHhhhhcCCCCC---H-----HH
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK-----PID-DSVDLHTIAQSKFCENLS---G-----AD 637 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-----~~~-~~~~~~~la~~~~~~~~s---g-----~d 637 (702)
.|..+.|.++++. |+ .+|.++-|..+|..+|.+.++-.. ++. ..+++..-|...+...|+ | ..
T Consensus 561 AN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~ 637 (906)
T KOG2004|consen 561 ANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQ 637 (906)
T ss_pred ccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999998 99 499999999999999998886542 222 234444433323333332 2 34
Q ss_pred HHHHHHHHHHHHHHHH
Q 045279 638 LAAMMNEAAMAALEDK 653 (702)
Q Consensus 638 l~~~~~~a~~~a~~~~ 653 (702)
|..+|+.++..-++..
T Consensus 638 iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 638 IEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5556776666555444
No 121
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.8e-15 Score=163.39 Aligned_cols=240 Identities=18% Similarity=0.224 Sum_probs=158.2
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-----
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN----- 501 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~----- 501 (702)
.-.+-.|++.+|+++.+++.-.. ..+-..+.-++|+||||+|||+|++.+|+.++..|+++....+.+
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~-------l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQK-------LTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHH-------HhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhc
Confidence 34567899999999988775432 112233455789999999999999999999999999998654432
Q ss_pred ----cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHH-----HH-hhhCCCCCCcEEEEEe
Q 045279 502 ----KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQL-----LI-ELDGADKRKGVFVIGA 571 (702)
Q Consensus 502 ----~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l-----l~-~l~~~~~~~~~~vI~a 571 (702)
.|+|.....+-+-+.+|...+| |++|||||.+...-.++..+.+-+++.-- .. .++-.-.-.+|++|+|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 3999988888889999998888 89999999998654444333333322111 10 0111123457999999
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-----CCCC-CCCCHHHHhhhhcCCCCC---H-HHHHHH
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-----KPID-DSVDLHTIAQSKFCENLS---G-ADLAAM 641 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-----~~~~-~~~~~~~la~~~~~~~~s---g-~dl~~~ 641 (702)
+|..+.|+.+++. |+. +|.++-|+.+|..+|.+.++-. .++. .+..+..-|...+...|+ | +.|.+-
T Consensus 473 ANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~ 549 (782)
T COG0466 473 ANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLERE 549 (782)
T ss_pred cCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHH
Confidence 9999999999998 994 9999999999999999887542 3333 123333322222233332 2 444444
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 642 MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 642 ~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
+...+..++.+....... ....|+..++.+-|....
T Consensus 550 i~ki~RK~~~~i~~~~~k----~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 550 IAKICRKAAKKILLKKEK----SIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred HHHHHHHHHHHHHhcCcc----cceeeCHHHHHHHhCCcc
Confidence 444444444444332111 113577777777766543
No 122
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.64 E-value=4.3e-15 Score=172.15 Aligned_cols=230 Identities=17% Similarity=0.257 Sum_probs=165.1
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc-------
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL------- 500 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~------- 500 (702)
-.+..|++.+|+.+.+++..... .+...+..++|+||||||||++++.+|+.++.+|+.++.+...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~-------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSR-------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHh-------cccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhcc
Confidence 34589999999999876654321 1223445689999999999999999999999999998866543
Q ss_pred --ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-------------CCCCc
Q 045279 501 --NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-------------DKRKG 565 (702)
Q Consensus 501 --~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-------------~~~~~ 565 (702)
..|+|.....+.+.+..+....| ||||||+|.+....+. +..+.|+..||.. ....+
T Consensus 394 ~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-------~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 394 HRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-------DPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred chhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-------CHHHHHHHHhccccEEEEecccccccccCCc
Confidence 23677766666666766655444 8999999999864322 1244556555531 13367
Q ss_pred EEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-----CCCC------CCCCHHHHhhhhcCCCCC
Q 045279 566 VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-----KPID------DSVDLHTIAQSKFCENLS 634 (702)
Q Consensus 566 ~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-----~~~~------~~~~~~~la~~~~~~~~s 634 (702)
+++|+|+|.. .|+++|+. ||. +|.|+.|+.++..+|.+.++.. .... .+.-++.++. .++..+.
T Consensus 466 v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~G 540 (784)
T PRK10787 466 VMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAG 540 (784)
T ss_pred eEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccC
Confidence 8999999987 59999999 995 8999999999999999888741 1111 1222456664 5667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 635 GADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 635 g~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|.|+++++..+..++.+..... ......|+.+++.+.|..-+
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~----~~~~v~v~~~~~~~~lg~~~ 583 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDK----SLKHIEINGDNLHDYLGVQR 583 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcC----CCceeeecHHHHHHHhCCCc
Confidence 89999999998887777765421 12345789999988887543
No 123
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.63 E-value=3.5e-15 Score=166.95 Aligned_cols=213 Identities=22% Similarity=0.271 Sum_probs=147.9
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEE
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFI 492 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~ 492 (702)
.....|+++.|.+...+.+...+. ...+.++||+||||||||++|+++++.+ +.+|+
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 345688999999988777654321 1345689999999999999999998753 36899
Q ss_pred EEecccc-------cccCcCchH----------------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHH
Q 045279 493 HIKGPEL-------LNKYVGESE----------------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERL 549 (702)
Q Consensus 493 ~i~~~~l-------~~~~~g~~~----------------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~ 549 (702)
.++++.. .....|... .....++. ....++|||||++.+. ...
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~-----------~~~ 191 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELH-----------PVQ 191 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCC-----------HHH
Confidence 9998642 111111000 00001222 2356899999999999 788
Q ss_pred HHHHHHhhhCCC--------------------------CCCcEEEE-EecCCCCccCccccCCCccceEEEcCCCCHHHH
Q 045279 550 LNQLLIELDGAD--------------------------KRKGVFVI-GATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602 (702)
Q Consensus 550 ~~~ll~~l~~~~--------------------------~~~~~~vI-~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r 602 (702)
++.||..|+... -..++.+| +||+.++.++|++++ ||. .+.|++++.+++
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei 268 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEI 268 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHH
Confidence 888888775410 01233444 556779999999988 985 788999999999
Q ss_pred HHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 603 GLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 603 ~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
..|++..+++..+.-+ ..++.++ .+ .++++++.++++.|+..|..+.. ..|+.+|++.++..-
T Consensus 269 ~~Il~~~a~k~~i~is~~al~~I~--~y--~~n~Rel~nll~~Aa~~A~~~~~-----------~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 269 KEIAKNAAEKIGINLEKHALELIV--KY--ASNGREAVNIVQLAAGIALGEGR-----------KRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHH--Hh--hhhHHHHHHHHHHHHHHHhhCCC-----------cEEcHHHHHHHhCCc
Confidence 9999999988665432 2244444 22 24789999999999877765421 279999999999744
No 124
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.63 E-value=4.1e-15 Score=166.41 Aligned_cols=208 Identities=23% Similarity=0.384 Sum_probs=134.7
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEE
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKI 189 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i 189 (702)
+.+|++|+|.+..++.+...+. ...+.++||+||||||||++|+++.+.. +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~-------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALC-------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHh-------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 3489999999999998885441 1235689999999999999999997642 3678999
Q ss_pred echhh-------hcccccccH----------------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHH
Q 045279 190 SATEV-------VSGVSGASE----------------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVT 246 (702)
Q Consensus 190 ~~~~l-------~~~~~g~~~----------------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 246 (702)
+|+.. .....+... ..-.+.+..+ ...+||||||+.|.... .+
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~~~-----------q~ 193 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHPVQ-----------MN 193 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCHHH-----------HH
Confidence 98642 111111100 0001123333 34599999999987543 33
Q ss_pred HHHHHHhhhccccCCCCCCCCCC---------CCCCCCCeEEEEEec-CCCCCCCccccCCCCcceEEEeCCCCHHHHHH
Q 045279 247 QLMTCMDESHRLVQPGDQKSKSD---------ASDSKPGYVLVIGAT-NRPDAVDPALRRPGRFDREIVLGVPDENARVQ 316 (702)
Q Consensus 247 ~ll~~ld~~~~~~~~~~~~~~~~---------~~~~~~~~v~vI~at-n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~ 316 (702)
.|+..+++...++..+....... .....+.++++|++| +.++.++|++++ |+ ..+.|++++.+++.+
T Consensus 194 ~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~~ 270 (531)
T TIGR02902 194 KLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHHH
Confidence 56777765433322111110000 011123446666554 668999999999 98 578999999999999
Q ss_pred HHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 317 ILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 317 Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
|++..+++.......+ +..++..+. +++++.++++.|+..+
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIA 312 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Confidence 9999888766543333 344444432 7899999988887655
No 125
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.4e-15 Score=167.29 Aligned_cols=185 Identities=21% Similarity=0.285 Sum_probs=135.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
..+|++++|++.+++.|.+.+... +.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 457899999999999888766432 34556799999999999999999998865
Q ss_pred --------------eEEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHH
Q 045279 490 --------------NFIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLN 551 (702)
Q Consensus 490 --------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 551 (702)
.+++++.++ ..+...+|.+.+.+. .....|+||||+|.+. ....|
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls-----------~~AaN 142 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT-----------NHAFN 142 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC-----------HHHHH
Confidence 223333221 123445677776654 2346899999999998 78899
Q ss_pred HHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcC
Q 045279 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFC 630 (702)
Q Consensus 552 ~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~ 630 (702)
.||+.|+.. ..++++|++||.++.|.+.+++ || ..+.|..++.++..+.++..+.+.++..+. .++.++ ..+
T Consensus 143 ALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA--~~A 215 (700)
T PRK12323 143 AMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLA--QAA 215 (700)
T ss_pred HHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHc
Confidence 999999864 4567888899999999999998 99 689999999999999988888766554332 245555 222
Q ss_pred CCCCHHHHHHHHHHHH
Q 045279 631 ENLSGADLAAMMNEAA 646 (702)
Q Consensus 631 ~~~sg~dl~~~~~~a~ 646 (702)
+-+.++..+++..+.
T Consensus 216 -~Gs~RdALsLLdQai 230 (700)
T PRK12323 216 -QGSMRDALSLTDQAI 230 (700)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 224455555554433
No 126
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.8e-15 Score=161.09 Aligned_cols=185 Identities=22% Similarity=0.289 Sum_probs=136.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++.+++.|...+.. -+.++.+||+||||||||++|+++|+.+++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 4899999999999999887731 2335778999999999999999999998752
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ......++.+...+. .+...|+||||+|.|... ..+.|+..+
T Consensus 80 ~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-----------A~NALLKtL 142 (702)
T PRK14960 80 AVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-----------SFNALLKTL 142 (702)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----------HHHHHHHHH
Confidence 23333321 112345566665543 234569999999988643 345678888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD 332 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~ 332 (702)
++. ++.+.+|.+|+.+..+.+.+++ |+ .++.|..++.++....+..++..........
T Consensus 143 EEP-------------------P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~e 200 (702)
T PRK14960 143 EEP-------------------PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQD 200 (702)
T ss_pred hcC-------------------CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 752 4557888888888889999988 98 6799999999999999998887766554433
Q ss_pred -HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 333 -LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 333 -~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+++.+.| +.|++.++++.+..
T Consensus 201 AL~~IA~~S~G-dLRdALnLLDQaIa 225 (702)
T PRK14960 201 AIWQIAESAQG-SLRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 5567766655 88888888776653
No 127
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.7e-14 Score=158.23 Aligned_cols=183 Identities=19% Similarity=0.252 Sum_probs=127.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--------------- 184 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------------- 184 (702)
+-+|++++|++++++.|...+.. -+.++.+||+|||||||||+|+++|+.+++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKK------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 34899999999999888876622 123466999999999999999999999864
Q ss_pred ---------CeEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 185 ---------PFYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 185 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
.++.++++. ......++.+.+.+.. +...|+||||+|.+... ..+.|+..
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-----------a~~~LLk~ 140 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-----------AFNALLKT 140 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-----------HHHHHHHH
Confidence 244444321 1112344555544432 23469999999988532 23457777
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~ 331 (702)
++.. ++.+++|++|+.+..+++++++ |+ ..+.|..|+.++...+++..+.........
T Consensus 141 LE~p-------------------~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~ 198 (472)
T PRK14962 141 LEEP-------------------PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEIDR 198 (472)
T ss_pred HHhC-------------------CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCCH
Confidence 7642 4457888888778899999999 98 689999999999999999888765543333
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
.+..+++.+.| ..+.+.+.+..
T Consensus 199 eal~~Ia~~s~G-dlR~aln~Le~ 221 (472)
T PRK14962 199 EALSFIAKRASG-GLRDALTMLEQ 221 (472)
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHH
Confidence 35567766554 45554444443
No 128
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.1e-14 Score=165.26 Aligned_cols=190 Identities=22% Similarity=0.273 Sum_probs=133.9
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE--------EEech
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY--------KISAT 192 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--------~i~~~ 192 (702)
.+|++|+|++.+++.|...+.. -+.++.+||+|||||||||+|+++|+.+++... .-+|.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQ------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 4899999999999999877632 123455799999999999999999999976410 00111
Q ss_pred hhhcc-------ccc---ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 193 EVVSG-------VSG---ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 193 ~l~~~-------~~g---~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
.+..+ +.+ .....++.+.+.+. .+...|+||||+|.|... ..+.||..|++
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-----------AqNALLKtLEE---- 145 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-----------SFNALLKTLEE---- 145 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-----------HHHHHHHHHhc----
Confidence 11111 001 11234555555443 234569999999998633 45578888886
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHH
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIA 337 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la 337 (702)
.++++++|++|+.+..|.+.+++ |+ .++.|..++.++....+...+....+.... .+..++
T Consensus 146 ---------------PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA 207 (944)
T PRK14949 146 ---------------PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA 207 (944)
T ss_pred ---------------cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 35668899999999999999999 98 779999999999999998887665443332 355666
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 045279 338 RSTPGFVGADLAALANKAG 356 (702)
Q Consensus 338 ~~t~g~~~~dl~~l~~~a~ 356 (702)
+.+.| +.|++.+++..+.
T Consensus 208 ~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 208 KAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 66655 7777777777655
No 129
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2e-14 Score=160.04 Aligned_cols=185 Identities=19% Similarity=0.247 Sum_probs=134.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
..+|++++|++.+++.|..++.. .+.+..+||+||+|||||++++++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDG------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 45789999999999988876532 134556799999999999999999998854
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.+++++.++ ..+...++.+++.+.. ....|+||||+|.|. ...+|.||+.
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT-----------~~A~NALLKt 142 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT-----------NHAFNAMLKT 142 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC-----------HHHHHHHHHH
Confidence 233333321 1233456777766542 346899999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ..++.||++||.++.|.+.+++ || ..+.|..++.++...+|+..+.+.++..+ ..+..|+ ..++| +.
T Consensus 143 LEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA--~~A~G-sm 214 (830)
T PRK07003 143 LEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA--RAAQG-SM 214 (830)
T ss_pred HHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCC-CH
Confidence 9864 4477888899999999999988 99 68999999999999999998887665432 3345555 22222 33
Q ss_pred HHHHHHHHHHH
Q 045279 636 ADLAAMMNEAA 646 (702)
Q Consensus 636 ~dl~~~~~~a~ 646 (702)
++..+++..+.
T Consensus 215 RdALsLLdQAi 225 (830)
T PRK07003 215 RDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHH
Confidence 44445544433
No 130
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=8.3e-15 Score=157.19 Aligned_cols=203 Identities=20% Similarity=0.237 Sum_probs=138.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|++++|++.+++.+...+.. + +.+..+||+||||||||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45789999999999888775532 1 345567999999999999999999988532
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.++++. ......++.+.+.+.. ....|+||||+|.+. ...++.||..
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~-----------~~a~naLLk~ 142 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC-----------HHHHHHHHHH
Confidence 22222211 1233456677665542 235699999999997 6778899999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg 635 (702)
++... ..+.+|++|+.++.+.+++.+ |+ ..+.|++|+.++...+++..+++.+..- +..++.++. +++
T Consensus 143 lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~------~s~ 211 (363)
T PRK14961 143 LEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAY------HAH 211 (363)
T ss_pred HhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcC
Confidence 98643 456677778888889888877 88 5899999999999999999888766432 233455552 234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
++++.+++..-..+.. . ...|+.+++.+++..
T Consensus 212 G~~R~al~~l~~~~~~-~-----------~~~It~~~v~~~l~~ 243 (363)
T PRK14961 212 GSMRDALNLLEHAINL-G-----------KGNINIKNVTDMLGL 243 (363)
T ss_pred CCHHHHHHHHHHHHHh-c-----------CCCCCHHHHHHHHCC
Confidence 4555444432211111 0 115777777776653
No 131
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6.1e-15 Score=162.68 Aligned_cols=180 Identities=22% Similarity=0.268 Sum_probs=133.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.+++.|..++.. .+.+..+||+||+|||||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 46799999999999988876642 144567899999999999999999998865
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.+++++- .+...+|.+...+. ...+.|+||||+|.+. ....+.|+..
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~~A~NALLKt 141 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------THSFNALLKT 141 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHH
Confidence 3444444321 23445677766553 2356799999999998 6788999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+... ..+.+|++|+.+..+.+.+++ |+ .++.|..++.++....++..+.+.++..+ ..+..++. .++
T Consensus 142 LEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~------~S~ 210 (702)
T PRK14960 142 LEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE------SAQ 210 (702)
T ss_pred HhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcC
Confidence 98643 456777788888888888887 88 58999999999999999998887765433 33455662 244
Q ss_pred HHHHHHHHH
Q 045279 636 ADLAAMMNE 644 (702)
Q Consensus 636 ~dl~~~~~~ 644 (702)
+++|.+++.
T Consensus 211 GdLRdALnL 219 (702)
T PRK14960 211 GSLRDALSL 219 (702)
T ss_pred CCHHHHHHH
Confidence 555555543
No 132
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=1.7e-14 Score=161.77 Aligned_cols=185 Identities=24% Similarity=0.311 Sum_probs=135.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++.+++.|...+.. + +-++.+||+||+||||||+|+.+|+.+++.
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 4899999999999999877732 1 234558999999999999999999998763
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ......++.+.+.+. .+...|+||||+|.|... ..+.||+.|
T Consensus 81 ~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-----------a~NALLKtL 143 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-----------SFNALLKTL 143 (647)
T ss_pred HHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-----------HHHHHHHHH
Confidence 22222221 112234555555543 234569999999988743 355688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .++++.+|.+|+.+..|.+.+++ |+ ..+.|..++.++....+...+....+....
T Consensus 144 EE-------------------Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~ 201 (647)
T PRK07994 144 EE-------------------PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPR 201 (647)
T ss_pred Hc-------------------CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 86 35678899999999999999999 98 789999999999999998887665544332
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
.+..++..+.| +.++...+++.+..
T Consensus 202 aL~~Ia~~s~G-s~R~Al~lldqaia 226 (647)
T PRK07994 202 ALQLLARAADG-SMRDALSLTDQAIA 226 (647)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35566766665 77777777776543
No 133
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.60 E-value=1.7e-14 Score=169.05 Aligned_cols=198 Identities=21% Similarity=0.254 Sum_probs=139.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
+..++.++|.+.....+.+.+. .....+++|+||||||||++|+.+|..+ +..++.+
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~-------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILL-------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHh-------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 3467788888886444433221 2344578999999999999999999976 3557778
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
+.+.+. ..|.|+.+..++.+|+.+.. ..++||||||+|.+.+.++..+. .++-+.|+..| ....+.+|+|
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l----~~G~l~~Iga 322 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPAL----ARGELRTIAA 322 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHh----hCCCeEEEEe
Confidence 777766 36899999999999999864 45789999999999976543322 12233444444 3567899999
Q ss_pred cCCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-----CCCHHHHhhhhcCCCC-----CHH
Q 045279 572 TNRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-----SVDLHTIAQSKFCENL-----SGA 636 (702)
Q Consensus 572 tn~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-----~~~~~~la~~~~~~~~-----sg~ 636 (702)
|+..+ .+|+||.| ||. .|.++.|+.+++..|++.+.+...... +..+..++ .++.+| -..
T Consensus 323 TT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~--~ls~ryi~~r~LPD 397 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAV--ELSHRYIPGRQLPD 397 (852)
T ss_pred cCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHH--HHcccccccccCcc
Confidence 98643 48999999 995 899999999999999877766543222 22334444 334444 334
Q ss_pred HHHHHHHHHHH
Q 045279 637 DLAAMMNEAAM 647 (702)
Q Consensus 637 dl~~~~~~a~~ 647 (702)
-.-.++.+|+.
T Consensus 398 KAIdlldea~a 408 (852)
T TIGR03345 398 KAVSLLDTACA 408 (852)
T ss_pred HHHHHHHHHHH
Confidence 45566777764
No 134
>PRK04195 replication factor C large subunit; Provisional
Probab=99.60 E-value=1.2e-14 Score=161.90 Aligned_cols=189 Identities=23% Similarity=0.311 Sum_probs=135.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+.++++++|.+.++..+..++.... .| .++.++||+||||||||++|+++|++++.+++.+++++...
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-- 77 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-- 77 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc--
Confidence 45678999999999999888775432 12 34778999999999999999999999999999999987532
Q ss_pred cCchHHHHHHHHHHHHh------CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 504 VGESELAVRTLFSRART------CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
...++.+...+.. ..+.||+|||+|.+..+.+ ...++.|+..++. .+..+|+++|.+..
T Consensus 78 ----~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~~~~ 142 (482)
T PRK04195 78 ----ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTANDPYD 142 (482)
T ss_pred ----HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccCccc
Confidence 1233333333321 2578999999999875221 2345566666652 23346678898888
Q ss_pred cCc-cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 578 MDR-AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 578 ld~-a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
+.+ .+.+ |+ ..|.|+.|+.+++..+++..+...++..+ ..++.++. .+++|+|.+++....
T Consensus 143 ~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~------~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 143 PSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAE------RSGGDLRSAINDLQA 205 (482)
T ss_pred cchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcCCCHHHHHHHHHH
Confidence 877 4444 44 68999999999999999998887665432 34556662 356799999887654
No 135
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.59 E-value=3.9e-14 Score=152.44 Aligned_cols=300 Identities=24% Similarity=0.235 Sum_probs=171.6
Q ss_pred hhhhhccccchhhhhhhhhccccccccccccccccchhhhhhhhhhhhhcCCCCCCcccccCCCCCCcc-cccCHHHHHH
Q 045279 56 SMLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVKGGMGLGAEELKGKEGPRFQ-DLGGMESVLE 134 (702)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~G~~~~k~ 134 (702)
+.++++++.+......+--.+..+-.|+.|+.++..-...... .. ......+.... .-.-.++ .|+|++.+|+
T Consensus 8 ~~~~CSFCGr~~~ev~~li~g~~~~IC~~Ci~~~~~i~~~~~~-~~--~~~~~~~~~p~---~i~~~L~~~ViGq~~ak~ 81 (412)
T PRK05342 8 KLLYCSFCGKSQHEVRKLIAGPGVYICDECIELCNEIIREELK-EE--AVELKELPTPK---EIKAHLDQYVIGQERAKK 81 (412)
T ss_pred CccccCCCCCChhhccccccCCCCcccchHHHHHHHHhhhhhh-cc--ccccccCCCHH---HHHHHHhhHeeChHHHHH
Confidence 4557888888655555444455556677777654433222100 00 00000011000 0001344 4899999999
Q ss_pred HHHHHhhhhccCCCcccc---cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccccHHH-HHHH
Q 045279 135 ELKMEVIVPLYHPQLPQW---LGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGASEEN-IRDL 209 (702)
Q Consensus 135 ~l~~~v~~~~~~~~~~~~---~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~~~~~-~~~~ 209 (702)
.+...+...+........ -...+..++||+||||||||++|+++|..++.+|+.++++.+.. +|.|..... +..+
T Consensus 82 ~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l 161 (412)
T PRK05342 82 VLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKL 161 (412)
T ss_pred HHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHH
Confidence 998776544332211000 01125678999999999999999999999999999999998764 577765433 3444
Q ss_pred HHHH----HhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCC-CCCCC-CCCCCCCCCCeEEE
Q 045279 210 FSKA----YRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQP-GDQKS-KSDASDSKPGYVLV 280 (702)
Q Consensus 210 f~~a----~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~-~~~~~-~~~~~~~~~~~v~v 280 (702)
+..+ ....++||||||||.+.....+. .+-....+...||..|++....+.. ++... ......-...++++
T Consensus 162 ~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilf 241 (412)
T PRK05342 162 LQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILF 241 (412)
T ss_pred HHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCcee
Confidence 4322 23467899999999998753221 1122235678899999865433322 11111 11100011123444
Q ss_pred EEecCCC---------------------------------------C-----CCCccccCCCCcceEEEeCCCCHHHHHH
Q 045279 281 IGATNRP---------------------------------------D-----AVDPALRRPGRFDREIVLGVPDENARVQ 316 (702)
Q Consensus 281 I~atn~~---------------------------------------~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~ 316 (702)
|++.+.. + .+.|.|.. |++.++.|.+.+.+++.+
T Consensus 242 i~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~ 319 (412)
T PRK05342 242 ICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVR 319 (412)
T ss_pred eecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHH
Confidence 4211100 0 13566666 999999999999999999
Q ss_pred HHHH----hhcCc-------cc--CCc-ccHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 317 ILSV----LTRNL-------RV--EGS-FDLVKIARS--TPGFVGADLAALANKAGNLAMKRI 363 (702)
Q Consensus 317 Il~~----~~~~~-------~~--~~~-~~~~~la~~--t~g~~~~dl~~l~~~a~~~a~~r~ 363 (702)
|+.. +++++ .+ ... .-+..+++. ..++-.|.|+.++...+...+..+
T Consensus 320 Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 320 ILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 9973 33221 11 111 124456654 456667888888887776665543
No 136
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.59 E-value=1.8e-14 Score=169.63 Aligned_cols=168 Identities=26% Similarity=0.339 Sum_probs=128.9
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
..++.++|.+.....+.+.+. .+...+++|+||||||||++|+.+|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~-------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHh-------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 456788888876554444322 1345678999999999999999999987 67888988
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 496 GPELL--NKYVGESELAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
.+.+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.++..+. .+..+.|...+ ....+.+|+||
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~---~d~~~~lkp~l----~~g~l~~IgaT 314 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPAL----ARGELHCVGAT 314 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccc---hhHHHHhcchh----hcCCCeEEEcC
Confidence 88876 56889999999999988644 46889999999999976544333 22334444333 35688999999
Q ss_pred CCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 045279 573 NRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID 616 (702)
Q Consensus 573 n~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~ 616 (702)
+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+.......
T Consensus 315 t~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~ 360 (857)
T PRK10865 315 TLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELH 360 (857)
T ss_pred CCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccC
Confidence 9876 48999999 997 67899999999999999887665443
No 137
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.8e-14 Score=151.30 Aligned_cols=190 Identities=22% Similarity=0.312 Sum_probs=130.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE--------EEech
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY--------KISAT 192 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--------~i~~~ 192 (702)
.+|++|+|++.+++.+...+.. + +.++.+||+|||||||||+|+++|+.+++... ..+|.
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4899999999999999877722 1 23456899999999999999999999864210 01111
Q ss_pred hhhcc----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 193 EVVSG----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 193 ~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
.+..+ ........++.+.+.+.. +...|++|||+|.+... ..+.|+..+++.
T Consensus 81 ~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~-----------a~naLLk~lEe~--- 146 (363)
T PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH-----------SFNALLKTLEEP--- 146 (363)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH-----------HHHHHHHHHhcC---
Confidence 11111 001223445566555432 23459999999988532 234577777752
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHH
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIA 337 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la 337 (702)
++++.+|.+|+.++.+.+.+++ |+ ..+.|++|+.++..+++...++......+ ..+..++
T Consensus 147 ----------------~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia 207 (363)
T PRK14961 147 ----------------PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIA 207 (363)
T ss_pred ----------------CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4457788888888889999998 98 67999999999999999988877654333 2355567
Q ss_pred hhCCCCCHHHHHHHHHHHH
Q 045279 338 RSTPGFVGADLAALANKAG 356 (702)
Q Consensus 338 ~~t~g~~~~dl~~l~~~a~ 356 (702)
..+.| +++++.++++.+.
T Consensus 208 ~~s~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 208 YHAHG-SMRDALNLLEHAI 225 (363)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 66655 6777777766553
No 138
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.6e-14 Score=158.40 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=135.6
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++.+++.|...+.. -+.++.+||+||||||||++|+++|+.+++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQ------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 3899999999999999987732 1234568999999999999999999998653
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ......++.+.+.+. .+...|+||||+|.|... ..+.|+..|
T Consensus 81 ~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~naLLk~L 143 (509)
T PRK14958 81 EIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNALLKTL 143 (509)
T ss_pred HHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHHHHHHH
Confidence 33444321 122344566666543 233469999999988743 245688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++. |.++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....+..+++..+.....
T Consensus 144 Eep-------------------p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~ 201 (509)
T PRK14958 144 EEP-------------------PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENA 201 (509)
T ss_pred hcc-------------------CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 862 4568888888888989989999 88 668999999999988888888776554333
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+..+++...| +.+++.++++.+.
T Consensus 202 al~~ia~~s~G-slR~al~lLdq~i 225 (509)
T PRK14958 202 ALDLLARAANG-SVRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHH
Confidence 35567766654 7888888887664
No 139
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=2.5e-14 Score=157.33 Aligned_cols=186 Identities=23% Similarity=0.290 Sum_probs=136.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
.+.+|++++|++.+.+.|...+.. .+.+.++||+||||||||++|+++|+.+++.
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~ 83 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCE 83 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCC
Confidence 456899999999998887765432 2456789999999999999999999988542
Q ss_pred ---------------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHH
Q 045279 491 ---------------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLN 551 (702)
Q Consensus 491 ---------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 551 (702)
+++++++ ...+...++.+++.+.. ....|+||||+|.+. ...++
T Consensus 84 ~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls-----------~~a~n 146 (507)
T PRK06645 84 QCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS-----------KGAFN 146 (507)
T ss_pred CChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC-----------HHHHH
Confidence 1222221 11245567888877753 345799999999997 67789
Q ss_pred HHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcC
Q 045279 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFC 630 (702)
Q Consensus 552 ~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~ 630 (702)
.|+..|+.. ...+++|++|+.++.+.+++.+ |+ ..+.|..++.++...+++..+++.+...+ ..++.++. .+
T Consensus 147 aLLk~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~--~s 219 (507)
T PRK06645 147 ALLKTLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY--KS 219 (507)
T ss_pred HHHHHHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc
Confidence 999999853 4567777788888899999988 88 58999999999999999999987765433 33566663 23
Q ss_pred CCCCHHHHHHHHHHHH
Q 045279 631 ENLSGADLAAMMNEAA 646 (702)
Q Consensus 631 ~~~sg~dl~~~~~~a~ 646 (702)
+-+.+++-+.+..++
T Consensus 220 -~GslR~al~~Ldkai 234 (507)
T PRK06645 220 -EGSARDAVSILDQAA 234 (507)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 225566656665554
No 140
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=5.9e-14 Score=154.36 Aligned_cols=193 Identities=22% Similarity=0.299 Sum_probs=139.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe------------E
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF------------Y 187 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~------------~ 187 (702)
+-+|++++|++.+++.|...+.. -+.+.++||+|||||||||+|+++|+.+++.. .
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 34899999999999998876521 23457899999999999999999999986521 1
Q ss_pred EEechhhhcc----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 188 KISATEVVSG----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 188 ~i~~~~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
.-+|..+..+ ........++.+++.+.. +...|++|||+|.+.. ...+.|+..++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk~LE 153 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLKTLE 153 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHHHHh
Confidence 1112222111 011234566777777642 2346999999998853 23456777777
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-c
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-D 332 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~ 332 (702)
+ .+..+++|.+|+.+..+.+.+++ |+ ..+.|..++.++...++...++........ .
T Consensus 154 e-------------------pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eA 211 (507)
T PRK06645 154 E-------------------PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEA 211 (507)
T ss_pred h-------------------cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 4 24568888888888899999999 98 679999999999999999988876654443 3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 333 ~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
+..+++.+.| +.+++.++++.+...
T Consensus 212 L~~Ia~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 212 LRIIAYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 5667777666 888888888777544
No 141
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=4.4e-14 Score=154.03 Aligned_cols=185 Identities=21% Similarity=0.264 Sum_probs=138.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV---------------- 184 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---------------- 184 (702)
-+|+||+|++.+++.|...+.. -+.++++||+||+||||||+|+.+|+.+++
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 4999999999999999876621 134578999999999999999999997643
Q ss_pred --------CeEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 185 --------PFYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 185 --------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
.++.+++++ ......++.+.+.+.. ....|++|||+|.|... ..+.|+..+
T Consensus 78 ~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~-----------A~NaLLK~L 140 (491)
T PRK14964 78 SIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS-----------AFNALLKTL 140 (491)
T ss_pred HHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH-----------HHHHHHHHH
Confidence 234444432 1223456777766642 23469999999988632 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .+..+.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...++..+...+.
T Consensus 141 Ee-------------------Pp~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~e 198 (491)
T PRK14964 141 EE-------------------PAPHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEE 198 (491)
T ss_pred hC-------------------CCCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHH
Confidence 85 24568888889988899999999 98 779999999999999999988876655443
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
.+..+++.+.| +.+++.++++.+..
T Consensus 199 AL~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 199 SLKLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35566766654 88888888777654
No 142
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.58 E-value=2e-14 Score=142.19 Aligned_cols=186 Identities=24% Similarity=0.271 Sum_probs=130.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC------eEEEechh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP------FYKISATE 193 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~------~~~i~~~~ 193 (702)
+.+|+++.|++.+++.|...+. .+-..++|||||||||||+.|+++|..++.+ +...+.++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~-------------~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALL-------------RRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHh-------------hcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 4499999999999999998772 1345679999999999999999999998752 23334444
Q ss_pred hhcccccccHHHHHHHHHHHHhh---------C-CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAYRT---------A-PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~~~---------~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
-....+ ...++ .-|.+.... . +.|++|||+|.|....+ ..|.+.|+..
T Consensus 99 erGisv--vr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq-----------~aLrr~mE~~-------- 156 (346)
T KOG0989|consen 99 ERGISV--VREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ-----------AALRRTMEDF-------- 156 (346)
T ss_pred cccccc--hhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHH-----------HHHHHHHhcc--------
Confidence 322111 11111 112222211 1 25999999999985543 4577888864
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPG 342 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g 342 (702)
+..+++|..||..+.|.+.+.+ |+ ..+.|+....+.....|+.++...++..+.+ +..++....|
T Consensus 157 -----------s~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 157 -----------SRTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred -----------ccceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 3458999999999999999999 99 5588999999999999999998888776655 5556666555
Q ss_pred CCHHHHHHHHHHH
Q 045279 343 FVGADLAALANKA 355 (702)
Q Consensus 343 ~~~~dl~~l~~~a 355 (702)
+.|+....++.+
T Consensus 223 -dLR~Ait~Lqsl 234 (346)
T KOG0989|consen 223 -DLRRAITTLQSL 234 (346)
T ss_pred -cHHHHHHHHHHh
Confidence 444444444433
No 143
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.58 E-value=8.6e-14 Score=150.52 Aligned_cols=220 Identities=22% Similarity=0.234 Sum_probs=139.6
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC---------CeEEEEecccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG---------ANFIHIKGPEL 499 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~---------~~~~~i~~~~l 499 (702)
+.+.|.+...+.|...+...+. + ..+.+++++||||||||++++.+++.+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 4577888777777666544321 1 3456799999999999999999998652 57888888654
Q ss_pred ccc----------C---------cCc-hHHHHHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 500 LNK----------Y---------VGE-SELAVRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 500 ~~~----------~---------~g~-~~~~~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
.+. . .+. .......++.... ...+.||+|||+|.+.+.. ..++..|+...+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~--------~~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD--------DDLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC--------cHHHHhHhcccc
Confidence 321 1 011 1222344554443 2456799999999997221 345666665422
Q ss_pred C-CCCCCcEEEEEecCCCC---ccCccccCCCccc-eEEEcCCCCHHHHHHHHHHHhccC---CCCCCCCHHHHhhhhcC
Q 045279 559 G-ADKRKGVFVIGATNRPD---VMDRAVLRPGRFG-KLLYVPLPTPDERGLILEALARKK---PIDDSVDLHTIAQSKFC 630 (702)
Q Consensus 559 ~-~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~~---~~~~~~~~~~la~~~~~ 630 (702)
. .....++.+|+++|.++ .+++.+.+ ||. ..+.|++|+.+++..|++..++.. ....+..++.++. ++
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~--~~ 233 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAA--LA 233 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHH--HH
Confidence 1 12336788899999876 47777766 774 679999999999999999988631 1111222333332 11
Q ss_pred CCCCHHHHHH---HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 631 ENLSGADLAA---MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 631 ~~~sg~dl~~---~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
..+++|+|. +|+.|+..|..+.. ..|+.+|+.+|+..+.
T Consensus 234 -~~~~Gd~R~al~~l~~a~~~a~~~~~-----------~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 234 -AQEHGDARKAIDLLRVAGEIAEREGA-----------ERVTEDHVEKAQEKIE 275 (365)
T ss_pred -HHhcCCHHHHHHHHHHHHHHHHHcCC-----------CCCCHHHHHHHHHHHH
Confidence 223345554 66677666654422 2688999998887664
No 144
>PLN03025 replication factor C subunit; Provisional
Probab=99.57 E-value=1.4e-14 Score=153.01 Aligned_cols=182 Identities=17% Similarity=0.154 Sum_probs=129.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+.+++++.|.+++...|...+.. ....+++|+||||||||++|+++|+++. ..++.++.++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 456789999999888877654321 1224699999999999999999999872 3467777765
Q ss_pred ccccCcCchHHHHHHHHHH---HH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 499 LLNKYVGESELAVRTLFSR---AR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~---a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
..+. ..++..... .. ...+.|++|||+|.+. ...++.|+..|+.... .+.+|++
T Consensus 75 ~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt-----------~~aq~aL~~~lE~~~~--~t~~il~ 135 (319)
T PLN03025 75 DRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT-----------SGAQQALRRTMEIYSN--TTRFALA 135 (319)
T ss_pred cccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcC-----------HHHHHHHHHHHhcccC--CceEEEE
Confidence 4321 123333222 11 1246799999999998 5667888888875433 3456667
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
||.+..+.+++.+ |+ ..+.|+.|+.++...+++..+++.++.- +..++.++ ..+++|+|.+++...
T Consensus 136 ~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~------~~~~gDlR~aln~Lq 202 (319)
T PLN03025 136 CNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAII------FTADGDMRQALNNLQ 202 (319)
T ss_pred eCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcCCCHHHHHHHHH
Confidence 8888888888987 88 4899999999999999999888766543 23345555 235678888887665
No 145
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.57 E-value=4.5e-14 Score=154.33 Aligned_cols=180 Identities=28% Similarity=0.409 Sum_probs=126.8
Q ss_pred CCcccccCHHHHHHH---HHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 121 PRFQDLGGMESVLEE---LKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~---l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
-+|++++|+++++.. +...+.. ....+++|+||||||||++|+++|+.++..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 389999999999766 6665521 233579999999999999999999999999999987642
Q ss_pred cccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
....++.+++.+. .+.+.||||||+|.+.... .+.|+..+++
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~-----------q~~LL~~le~------------------- 118 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQ-----------QDALLPHVED------------------- 118 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHH-----------HHHHHHHhhc-------------------
Confidence 2234555666553 2356799999999886432 2345555553
Q ss_pred CCCeEEEEEecC--CCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc--c-CC-cccHHHHHhhCCCCCHHH
Q 045279 274 KPGYVLVIGATN--RPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR--V-EG-SFDLVKIARSTPGFVGAD 347 (702)
Q Consensus 274 ~~~~v~vI~atn--~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~--~-~~-~~~~~~la~~t~g~~~~d 347 (702)
+.+++|++|+ +...+++++++ |+ ..+.|+.++.++...++...+.... . .. ...+..+++.+.| ..+.
T Consensus 119 --~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~ 192 (413)
T PRK13342 119 --GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARR 192 (413)
T ss_pred --CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHH
Confidence 2367777653 35589999999 98 7899999999999999988765431 1 11 2235566766644 5666
Q ss_pred HHHHHHHHH
Q 045279 348 LAALANKAG 356 (702)
Q Consensus 348 l~~l~~~a~ 356 (702)
+.+++..+.
T Consensus 193 aln~Le~~~ 201 (413)
T PRK13342 193 ALNLLELAA 201 (413)
T ss_pred HHHHHHHHH
Confidence 666665543
No 146
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.1e-14 Score=158.66 Aligned_cols=204 Identities=20% Similarity=0.239 Sum_probs=143.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------------- 489 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------- 489 (702)
.+..|++++|++.++..|...+.. ...+..+||+||||||||++|+++|+.+.+
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc 76 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC 76 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh
Confidence 356799999999998888776543 134455799999999999999999998743
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.+++++ ..+...++.+...+.. ..+.||||||+|.+. ...++.|+..
T Consensus 77 ~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLLk~ 139 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALLKT 139 (504)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHHHH
Confidence 144444421 1233456666554432 356799999999886 7788999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+++|++||.+..+.+.+.+ |+. .+.|+.|+.++....++..+++.++..+ ..+..++ ..++
T Consensus 140 LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia------~~s~ 208 (504)
T PRK14963 140 LEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA------RLAD 208 (504)
T ss_pred HHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcC
Confidence 9864 3466777788889999999987 885 8999999999999999999887765432 2345555 3355
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+|++.+++........ . ..|+.+++.+++...
T Consensus 209 GdlR~aln~Lekl~~~---~----------~~It~~~V~~~l~~~ 240 (504)
T PRK14963 209 GAMRDAESLLERLLAL---G----------TPVTRKQVEEALGLP 240 (504)
T ss_pred CCHHHHHHHHHHHHhc---C----------CCCCHHHHHHHHCCC
Confidence 6777766644332221 0 147777766665443
No 147
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.8e-14 Score=160.02 Aligned_cols=183 Identities=18% Similarity=0.227 Sum_probs=131.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
...+|++|+|++.+++.|..++.. .+.+..+||+||+|||||++|+++|+.+.+.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~s 78 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQE------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQ 78 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHH
Confidence 356789999999998888776532 1335678999999999999999999988542
Q ss_pred -----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 491 -----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 491 -----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++.+++..- .+-..++.+.+.+. .....||||||+|.+. ...++.||.
T Consensus 79 C~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt-----------~~a~naLLk 141 (624)
T PRK14959 79 CRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT-----------REAFNALLK 141 (624)
T ss_pred HHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC-----------HHHHHHHHH
Confidence 344433211 11233444433322 3456799999999998 778899999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~s 634 (702)
.|+.. ..++++|++||.+..+.+.+++ |+. ++.|+.++.++...+++..+.+.++.. +..++.++ .++
T Consensus 142 ~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA------~~s 210 (624)
T PRK14959 142 TLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA------RRA 210 (624)
T ss_pred Hhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHc
Confidence 99864 3467888889888888888887 884 789999999999999988887766532 23345555 345
Q ss_pred HHHHHHHHHHHH
Q 045279 635 GADLAAMMNEAA 646 (702)
Q Consensus 635 g~dl~~~~~~a~ 646 (702)
+++++.+++..-
T Consensus 211 ~GdlR~Al~lLe 222 (624)
T PRK14959 211 AGSVRDSMSLLG 222 (624)
T ss_pred CCCHHHHHHHHH
Confidence 667776666543
No 148
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.4e-13 Score=156.36 Aligned_cols=179 Identities=21% Similarity=0.286 Sum_probs=128.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeE-------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANF------------- 491 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~------------- 491 (702)
+.+|++|+|++.++..|..++... +.+..+||+||||||||++|+++|+.+++.-
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 467899999999998887765431 3345579999999999999999999886531
Q ss_pred -----------EEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 492 -----------IHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 492 -----------~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
+.+++++ ..+...+|.+.+.+. .....|+||||+|.+. ...++.||..
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-----------~eAqNALLKt 142 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-----------RSSFNALLKT 142 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-----------HHHHHHHHHH
Confidence 1111111 112344666665553 2346799999999998 8899999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ..++++|++|+.+..|.+.+++ || .++.|..++.++....++..+...++..+ ..+..++ .+++
T Consensus 143 LEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA------~~S~ 211 (944)
T PRK14949 143 LEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA------KAAN 211 (944)
T ss_pred Hhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcC
Confidence 9864 3456677778888889889988 88 68999999999999888888876554322 2344555 2344
Q ss_pred HHHHHHHH
Q 045279 636 ADLAAMMN 643 (702)
Q Consensus 636 ~dl~~~~~ 643 (702)
|++|.+++
T Consensus 212 Gd~R~ALn 219 (944)
T PRK14949 212 GSMRDALS 219 (944)
T ss_pred CCHHHHHH
Confidence 55554443
No 149
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.57 E-value=3.7e-14 Score=162.34 Aligned_cols=227 Identities=22% Similarity=0.300 Sum_probs=148.1
Q ss_pred CccccccCCcccchh---hhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRH---EFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
+.+++++.|++.+.. .+...+. .....+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 456788899888764 2333221 1233579999999999999999999999999988887531
Q ss_pred cCcCchHHHHHHHHHHHH-----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC--
Q 045279 502 KYVGESELAVRTLFSRAR-----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-- 574 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~-----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-- 574 (702)
....++..+..+. ...+.+|||||+|.+. ...++.|+..++. ..+++|++|+.
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln-----------~~qQdaLL~~lE~----g~IiLI~aTTenp 148 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN-----------KAQQDALLPWVEN----GTITLIGATTENP 148 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC-----------HHHHHHHHHHhcC----ceEEEEEecCCCh
Confidence 1123344444431 1345799999999987 5556777776653 45677776643
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc-------CCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK-------KPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~-------~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
...+++++++ |+ .++.|++++.+++..|++..+.. ..+.- +..++.|+ .++++|+|.+++-..
T Consensus 149 ~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La------~~s~GD~R~lln~Le 219 (725)
T PRK13341 149 YFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLV------DVANGDARSLLNALE 219 (725)
T ss_pred HhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHH------HhCCCCHHHHHHHHH
Confidence 3568899988 76 47899999999999999998862 12211 12234444 234556666555322
Q ss_pred HHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 647 MAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
..+. .... .......|+.+++.+++++........+..+|+.+++.+++
T Consensus 220 ~a~~-~~~~-----~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ks 268 (725)
T PRK13341 220 LAVE-STPP-----DEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKS 268 (725)
T ss_pred HHHH-hccc-----CCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHH
Confidence 2111 1000 01112248899999999886655666667889988888764
No 150
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.2e-14 Score=156.46 Aligned_cols=185 Identities=21% Similarity=0.233 Sum_probs=136.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.+++.|...+.. .+.+.++||+||+|+|||++|+++|+.+++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTL------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 46799999999998888765532 145678999999999999999999986532
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++++++++- .+...+|.+.+.+.. ..+.|++|||+|.+. ...+|.||..
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls-----------~~A~NaLLK~ 139 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS-----------NSAFNALLKT 139 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC-----------HHHHHHHHHH
Confidence 3455555431 234567778777653 346799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+... ..+++|++|+.++.+.+.+++ |+ ..+.|..++.++....+...+++.+..-+ ..++.++. .+ +-+-
T Consensus 140 LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~--~s-~Gsl 211 (491)
T PRK14964 140 LEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE--NS-SGSM 211 (491)
T ss_pred HhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-CCCH
Confidence 98654 457777788888889999988 88 57899999999999999998887765433 34556663 22 2344
Q ss_pred HHHHHHHHHHH
Q 045279 636 ADLAAMMNEAA 646 (702)
Q Consensus 636 ~dl~~~~~~a~ 646 (702)
+++-+.+..++
T Consensus 212 R~alslLdqli 222 (491)
T PRK14964 212 RNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 151
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=6e-14 Score=150.36 Aligned_cols=191 Identities=24% Similarity=0.336 Sum_probs=127.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE-------EEechhh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY-------KISATEV 194 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-------~i~~~~l 194 (702)
.|++|+|++.+++.|...+......+. ..+.+.++.+||+||||+|||++|+++|+.+.+... .-+|..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 699999999999999998866443222 223445788999999999999999999998754310 0001111
Q ss_pred hcc-----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcccc
Q 045279 195 VSG-----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLV 259 (702)
Q Consensus 195 ~~~-----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 259 (702)
..+ ...-....++.+++.+.. +...|+||||+|.|.... .+.|+..|++.
T Consensus 80 ~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~a-----------anaLLk~LEep---- 144 (394)
T PRK07940 80 LAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERA-----------ANALLKAVEEP---- 144 (394)
T ss_pred hcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHH-----------HHHHHHHhhcC----
Confidence 000 011123456777776653 234699999999996432 34588888752
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhh
Q 045279 260 QPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARS 339 (702)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~ 339 (702)
+.++++|.+|+.++.+.|.+++ |+ ..+.|+.|+.++..+++.... ... ......++..
T Consensus 145 ---------------~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~ 202 (394)
T PRK07940 145 ---------------PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARA 202 (394)
T ss_pred ---------------CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHH
Confidence 2334555555558999999999 98 789999999999887776321 221 2345567888
Q ss_pred CCCCCHHHHHHHH
Q 045279 340 TPGFVGADLAALA 352 (702)
Q Consensus 340 t~g~~~~dl~~l~ 352 (702)
+.|..++.+.-+.
T Consensus 203 s~G~~~~A~~l~~ 215 (394)
T PRK07940 203 SQGHIGRARRLAT 215 (394)
T ss_pred cCCCHHHHHHHhc
Confidence 8887776554443
No 152
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=5.5e-14 Score=156.75 Aligned_cols=193 Identities=24% Similarity=0.271 Sum_probs=137.7
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE--------EEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY--------KISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~--------~i~~ 191 (702)
+-+|++|+|++.+++.|...+.. -+.++.+||+||+|||||++|+++|+.+++.-. .-+|
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 33899999999999999987732 133567999999999999999999999865310 0011
Q ss_pred hhhhcc----------cccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG----------VSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~----------~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ ........++.+++.+. .+...|+||||+|.|.. ...+.|+..|++.
T Consensus 80 r~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALLKtLEEP-- 146 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAMLKTLEEP-- 146 (709)
T ss_pred HHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHHHHHHhC--
Confidence 111111 01122345667766543 23446999999987753 2345688888852
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~l 336 (702)
++++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++...++..++....+..+. .+..+
T Consensus 147 -----------------p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~I 206 (709)
T PRK08691 147 -----------------PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLL 206 (709)
T ss_pred -----------------CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 4558888899999999999988 98 668999999999999999988877655443 35667
Q ss_pred HhhCCCCCHHHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~~~ 358 (702)
++... .+.+++.++++.+...
T Consensus 207 a~~A~-GslRdAlnLLDqaia~ 227 (709)
T PRK08691 207 GRAAA-GSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHhC-CCHHHHHHHHHHHHHh
Confidence 76665 4888888888776543
No 153
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=3.1e-14 Score=157.77 Aligned_cols=184 Identities=19% Similarity=0.230 Sum_probs=132.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+.+|++++|++.+++.|..++... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 457899999999999888866432 345568999999999999999999988542
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++++++++ ..+...+|.+.+.+. .....|+||||+|.+. ...+|.||..
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls-----------~~a~naLLk~ 142 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS-----------GHSFNALLKT 142 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC-----------HHHHHHHHHH
Confidence 45554432 123445677776553 2346799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+... ..+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+++.++..+ ..+..++. .+ +-+-
T Consensus 143 LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~--~s-~Gsl 214 (509)
T PRK14958 143 LEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR--AA-NGSV 214 (509)
T ss_pred HhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-CCcH
Confidence 98653 457777788888888888887 88 57889999999988888888887665432 23455552 22 2233
Q ss_pred HHHHHHHHHH
Q 045279 636 ADLAAMMNEA 645 (702)
Q Consensus 636 ~dl~~~~~~a 645 (702)
+++-+++..+
T Consensus 215 R~al~lLdq~ 224 (509)
T PRK14958 215 RDALSLLDQS 224 (509)
T ss_pred HHHHHHHHHH
Confidence 4444455443
No 154
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=3.6e-14 Score=167.39 Aligned_cols=163 Identities=30% Similarity=0.332 Sum_probs=127.6
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
..++.+.|.+.....+.+.+. .+...+++|+||||||||++|+.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~-------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILG-------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHc-------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 457788898888777766442 2456689999999999999999999976 47899999
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 496 GPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
.+.++ .+|.|+.+..++.+|+.+....++||||||+|.+.+.++..+.. .+.+.|...+ ....+.+|++|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~l----~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI---DAANILKPAL----ARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc---cHHHHhHHHH----hCCCcEEEEeCC
Confidence 98877 57899999999999999988788999999999999765433322 2333333333 256788999998
Q ss_pred CCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 574 RPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 574 ~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
..+ ..|+++.+ ||. .|.++.|+.++...|++....
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~ 355 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRS 355 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHH
Confidence 754 47899999 996 578999999999899876543
No 155
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.56 E-value=4.7e-14 Score=141.61 Aligned_cols=151 Identities=30% Similarity=0.463 Sum_probs=111.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---FYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~i~~~~l~~ 196 (702)
+.+++|.+|+++++.+ .-.+...+.. ..-..++|+||||||||+||+.|+.....+ |+.+++..
T Consensus 134 PktL~dyvGQ~hlv~q-~gllrs~ieq---------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~--- 200 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQ-DGLLRSLIEQ---------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN--- 200 (554)
T ss_pred cchHHHhcchhhhcCc-chHHHHHHHc---------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc---
Confidence 3488999999988765 2222222221 223569999999999999999999988665 66666543
Q ss_pred ccccccHHHHHHHHHHHHhh-----CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRT-----APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.....++.+|+.+.+. ...||||||||.+....+. .||..++
T Consensus 201 ----a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD-----------~fLP~VE------------------ 247 (554)
T KOG2028|consen 201 ----AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD-----------TFLPHVE------------------ 247 (554)
T ss_pred ----cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh-----------cccceec------------------
Confidence 3446788999988753 4579999999988755443 2444443
Q ss_pred CCCCCeEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 272 DSKPGYVLVIGAT--NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 272 ~~~~~~v~vI~at--n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
.|.|.+||+| |+.-.+..+|++ |+ .++.+.....++...||..-.
T Consensus 248 ---~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 248 ---NGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred ---cCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHH
Confidence 3569999988 445689999999 88 778899999999999997643
No 156
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.55 E-value=5.7e-14 Score=166.10 Aligned_cols=200 Identities=26% Similarity=0.329 Sum_probs=141.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
+..++.++|.+.....+.+.+ ..+...+++|+||||||||++++.+|..+ +.+++.+
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l-------------~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVL-------------SRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHH-------------hcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 346677888887655444432 12345678999999999999999999975 6678888
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
+.+.+. .+|.|+.+..++.+|..+.. ..++||||||+|.+.+.+...+. .++.+.|...+ ....+.+|++
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~l----~~g~i~~Iga 308 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPAL----ARGELHCIGA 308 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchhh----hcCceEEEEe
Confidence 887775 56889999999999998865 35899999999999865433222 23344443333 3567899999
Q ss_pred cCCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-----HHHHh---hhhcCCCCCHHHH
Q 045279 572 TNRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-----LHTIA---QSKFCENLSGADL 638 (702)
Q Consensus 572 tn~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-----~~~la---~~~~~~~~sg~dl 638 (702)
|+..+ .+|+++.| ||. .|.++.|+.+++..|++.+...+.....+. +...+ ...+++.|-..-.
T Consensus 309 Tt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 309 TTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred CcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 98764 48999999 996 588999999999999998877766554432 22222 2222233333444
Q ss_pred HHHHHHHHH
Q 045279 639 AAMMNEAAM 647 (702)
Q Consensus 639 ~~~~~~a~~ 647 (702)
-.++.+|+.
T Consensus 386 idlld~a~a 394 (852)
T TIGR03346 386 IDLIDEAAA 394 (852)
T ss_pred HHHHHHHHH
Confidence 456666654
No 157
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=2.3e-13 Score=152.72 Aligned_cols=167 Identities=21% Similarity=0.263 Sum_probs=124.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+.+|++++|++.++..|...+... +.+..+||+||+|||||++|+++|+.+++.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 457899999999998887755431 344557999999999999999999988652
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.+++++ ..+...+|.+.+.+. .....|+||||+|.+. ...+|.||..
T Consensus 80 ~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls-----------~~a~NALLKt 142 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (647)
T ss_pred HHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC-----------HHHHHHHHHH
Confidence 23333321 012344666665543 2356799999999998 8889999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
|+.. ..++++|++|+.++.|.+.+++ || ..+.|..++.++....++..+...++..+ ..+..++
T Consensus 143 LEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia 207 (647)
T PRK07994 143 LEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLA 207 (647)
T ss_pred HHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9864 4467777788889999999988 98 69999999999999999888876655433 2344555
No 158
>PLN03025 replication factor C subunit; Provisional
Probab=99.55 E-value=8.8e-14 Score=146.97 Aligned_cols=180 Identities=19% Similarity=0.191 Sum_probs=122.3
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l 194 (702)
+-+|++++|++++++.|...+.. ....++||+||||||||++|+++|+.+. ..++.+++++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARD-------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 33899999999999998876521 1224699999999999999999999973 23566666543
Q ss_pred hcccccccHHHHHHHHHHHH-------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAY-------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
.. ...++..+.... .+.+.|++|||+|.|....+ +.|+..++..
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq-----------~aL~~~lE~~------------ 126 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ-----------QALRRTMEIY------------ 126 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH-----------HHHHHHHhcc------------
Confidence 21 112232222211 12356999999999875432 3456666542
Q ss_pred CCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHH
Q 045279 268 SDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGA 346 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~ 346 (702)
+....+|.+||....+.+++++ |+ ..+.|+.|+.++....+...+++.++... ..+..++....| ..+
T Consensus 127 -------~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR 195 (319)
T PLN03025 127 -------SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMR 195 (319)
T ss_pred -------cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 2235677888988899999999 88 67999999999999999988877655433 235566666554 334
Q ss_pred HHHHHH
Q 045279 347 DLAALA 352 (702)
Q Consensus 347 dl~~l~ 352 (702)
.+.+.+
T Consensus 196 ~aln~L 201 (319)
T PLN03025 196 QALNNL 201 (319)
T ss_pred HHHHHH
Confidence 333333
No 159
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=6.1e-14 Score=155.14 Aligned_cols=181 Identities=18% Similarity=0.217 Sum_probs=127.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+..|++++|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 45789999999998887765532 134456899999999999999999998753
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.++...- -+...++.+.+.+.. ....|+||||+|.+. ...++.||..
T Consensus 80 ~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls-----------~~a~naLLK~ 142 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR------TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS-----------KQSFNALLKT 142 (546)
T ss_pred HHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc-----------HHHHHHHHHH
Confidence 2333332111 112345566555432 356799999999998 7889999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+++|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+++.++..+ ..+..++ .+++
T Consensus 143 LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia------~~s~ 211 (546)
T PRK14957 143 LEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIA------YHAK 211 (546)
T ss_pred HhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcC
Confidence 9864 3456667777778888888877 88 69999999999999888888877665432 2344555 2345
Q ss_pred HHHHHHHHHH
Q 045279 636 ADLAAMMNEA 645 (702)
Q Consensus 636 ~dl~~~~~~a 645 (702)
+|++.+++..
T Consensus 212 GdlR~alnlL 221 (546)
T PRK14957 212 GSLRDALSLL 221 (546)
T ss_pred CCHHHHHHHH
Confidence 5666555543
No 160
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.55 E-value=7.9e-14 Score=149.12 Aligned_cols=209 Identities=24% Similarity=0.289 Sum_probs=137.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+..|+++.|.+.+++.+...+.. ....+++|+||||||||++|+++++.+. .+++.+++++
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~ 76 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD 76 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh
Confidence 345688899999888877765431 1223699999999999999999999873 3577888877
Q ss_pred ccccC-------------cCc-------hHHHHHHHHHHHHh-----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHH
Q 045279 499 LLNKY-------------VGE-------SELAVRTLFSRART-----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQL 553 (702)
Q Consensus 499 l~~~~-------------~g~-------~~~~~~~~f~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 553 (702)
+.... .+. ....++.+...... ..+.+|+|||+|.+. ....+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~-----------~~~~~~L 145 (337)
T PRK12402 77 FFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR-----------EDAQQAL 145 (337)
T ss_pred hhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC-----------HHHHHHH
Confidence 54221 011 11223333322221 245799999999886 4556666
Q ss_pred HHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCC
Q 045279 554 LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCEN 632 (702)
Q Consensus 554 l~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~ 632 (702)
...++.... .+.+|++|+.+..+.+.+.+ |+ ..+.|++|+.+++..+++..+++.++.. +..++.++ .
T Consensus 146 ~~~le~~~~--~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~------~ 214 (337)
T PRK12402 146 RRIMEQYSR--TCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIA------Y 214 (337)
T ss_pred HHHHHhccC--CCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------H
Confidence 666765433 23455566666677777776 77 5789999999999999999888766542 23345555 3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 633 LSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 633 ~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++++|++.+++.....+... ..||.+|+.+++...
T Consensus 215 ~~~gdlr~l~~~l~~~~~~~-------------~~It~~~v~~~~~~~ 249 (337)
T PRK12402 215 YAGGDLRKAILTLQTAALAA-------------GEITMEAAYEALGDV 249 (337)
T ss_pred HcCCCHHHHHHHHHHHHHcC-------------CCCCHHHHHHHhCCC
Confidence 45678888877655433111 157778877776654
No 161
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=7e-14 Score=156.58 Aligned_cols=179 Identities=17% Similarity=0.263 Sum_probs=130.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
..+|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+++
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg 79 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCG 79 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCC
Confidence 457899999999998887765431 34556799999999999999999998864
Q ss_pred --------------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHH
Q 045279 490 --------------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLN 551 (702)
Q Consensus 490 --------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~ 551 (702)
.++.++.++ ..+...+|.+.+.+.. ....|++|||+|.+. ...+|
T Consensus 80 ~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls-----------~~a~N 142 (618)
T PRK14951 80 VCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT-----------NTAFN 142 (618)
T ss_pred ccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC-----------HHHHH
Confidence 123332221 1233457777776543 235799999999998 77899
Q ss_pred HHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcC
Q 045279 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFC 630 (702)
Q Consensus 552 ~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~ 630 (702)
.||..|+.. ...+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....++..+.+.++..+ ..+..++.
T Consensus 143 aLLKtLEEP--P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~---- 213 (618)
T PRK14951 143 AMLKTLEEP--PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLAR---- 213 (618)
T ss_pred HHHHhcccC--CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH----
Confidence 999999864 3566777788888888888888 88 68999999999999999988887765533 23555662
Q ss_pred CCCCHHHHHHHHH
Q 045279 631 ENLSGADLAAMMN 643 (702)
Q Consensus 631 ~~~sg~dl~~~~~ 643 (702)
+++++++.+++
T Consensus 214 --~s~GslR~al~ 224 (618)
T PRK14951 214 --AARGSMRDALS 224 (618)
T ss_pred --HcCCCHHHHHH
Confidence 23345555444
No 162
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=2.5e-13 Score=148.53 Aligned_cols=222 Identities=21% Similarity=0.206 Sum_probs=139.0
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccccccc-
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNK- 502 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~- 502 (702)
+.+.|-+...+.+...+...+ ....+.+++++||||||||++++.+++.+ +..++.+++....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~---------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL---------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 445666666565655443321 11345678999999999999999999876 577889988654221
Q ss_pred ---------C-------cCch-HHHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCC
Q 045279 503 ---------Y-------VGES-ELAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRK 564 (702)
Q Consensus 503 ---------~-------~g~~-~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 564 (702)
. .|.+ ......+++.... ..+.||+|||+|.+....+ ...+..|+..++.... .
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~~-~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYPG-A 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccCC-C
Confidence 1 1111 2223333333332 3467999999999982211 3567777766655432 3
Q ss_pred cEEEEEecCCCC---ccCccccCCCcc-ceEEEcCCCCHHHHHHHHHHHhccCC---CCCCCCHHHHhhhhcCCCCC--H
Q 045279 565 GVFVIGATNRPD---VMDRAVLRPGRF-GKLLYVPLPTPDERGLILEALARKKP---IDDSVDLHTIAQSKFCENLS--G 635 (702)
Q Consensus 565 ~~~vI~atn~~~---~ld~a~~r~gRf-~~~i~~~~p~~~~r~~il~~~~~~~~---~~~~~~~~~la~~~~~~~~s--g 635 (702)
++.+|+++|..+ .+++.+.+ || ...|.|++++.++...|++..++... .-.+..++.++. .+.+.+ .
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~--~~~~~~Gd~ 248 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIAD--LTAREHGDA 248 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHH--HHHHhcCcH
Confidence 788888888764 56676655 66 35789999999999999998876421 112233455553 222222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+.+-++|..|+..|..+.. ..|+.+|+.+|+..+.+
T Consensus 249 r~a~~ll~~a~~~a~~~~~-----------~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREGS-----------RKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHHHHcCC-----------CCcCHHHHHHHHHHHHH
Confidence 3344667677666654422 27999999999987743
No 163
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.6e-13 Score=153.64 Aligned_cols=191 Identities=20% Similarity=0.286 Sum_probs=135.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-------------E
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF-------------Y 187 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~-------------~ 187 (702)
-+|++|+|++.+++.|...+.. -+.++.+||+||+||||||+|+++|+.+++.- .
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQ------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 3899999999999999987732 13345689999999999999999999987520 0
Q ss_pred EEechhhhcc----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 188 KISATEVVSG----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 188 ~i~~~~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
.-+|..+..+ ........++.+.+.+.. +...|++|||+|.|.... .+.|+..++
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a-----------~NaLLKtLE 149 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTA-----------FNAMLKTLE 149 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHH-----------HHHHHHhcc
Confidence 1112222111 001123356666666532 224599999999987432 446777777
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-c
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-D 332 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~ 332 (702)
+ .++++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...+...++.... .
T Consensus 150 E-------------------PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~A 207 (618)
T PRK14951 150 E-------------------PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQA 207 (618)
T ss_pred c-------------------CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5 25568888888888889989999 98 779999999999999999888766655443 3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 333 ~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+++.+.| +.+++.++++.+..
T Consensus 208 L~~La~~s~G-slR~al~lLdq~ia 231 (618)
T PRK14951 208 LRLLARAARG-SMRDALSLTDQAIA 231 (618)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 5667776665 78888877766543
No 164
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.8e-13 Score=151.34 Aligned_cols=185 Identities=19% Similarity=0.255 Sum_probs=131.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV---------------- 184 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---------------- 184 (702)
.+|++++|++.+++.|...+.. -+.++.+||+||||||||++|+.+|+.+++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 4899999999999999877722 123456899999999999999999998864
Q ss_pred --------CeEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 185 --------PFYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 185 --------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
.++.+++.. ......++.+++.+. .+...|+||||+|.|... ..+.|+..+
T Consensus 81 ~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~-----------a~naLLK~L 143 (546)
T PRK14957 81 AINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ-----------SFNALLKTL 143 (546)
T ss_pred HHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH-----------HHHHHHHHH
Confidence 122222211 011223445554443 234569999999988642 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD 332 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~ 332 (702)
++. |+.+.+|++|+.+..+.+.+++ |+ ..+.|..++.++....+...++...+.....
T Consensus 144 Eep-------------------p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~ 201 (546)
T PRK14957 144 EEP-------------------PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQ 201 (546)
T ss_pred hcC-------------------CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 862 4568888888888888888998 98 7899999999999999988877765544333
Q ss_pred -HHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 333 -LVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 333 -~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..++..+. .+.+++.++++.+..
T Consensus 202 Al~~Ia~~s~-GdlR~alnlLek~i~ 226 (546)
T PRK14957 202 SLEYIAYHAK-GSLRDALSLLDQAIS 226 (546)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 455666664 477777777776553
No 165
>PRK04195 replication factor C large subunit; Provisional
Probab=99.53 E-value=1.8e-13 Score=152.53 Aligned_cols=186 Identities=26% Similarity=0.379 Sum_probs=130.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.++++|+|++.+++.+..++..... | .++.++||+||||||||++|+++|+.++..++.+++++...
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 33899999999999999988854331 1 23678999999999999999999999999999999886432
Q ss_pred cccHHHHHHHHHHHHh------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYR------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
...+..+...+.. ..+.+|+|||+|.+...... ..+..|+..++..
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~-------~~~~aL~~~l~~~------------------ 129 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDR-------GGARAILELIKKA------------------ 129 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccch-------hHHHHHHHHHHcC------------------
Confidence 1223333333221 24679999999998753211 1233455555421
Q ss_pred CCCeEEEEEecCCCCCCCc-cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDP-ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~-al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l 351 (702)
+..+|.+||.+..+.+ .+++ |+ ..|.|+.|+.+++..++..++....+..+ ..+..++..+.| |++.+
T Consensus 130 ---~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~a 199 (482)
T PRK04195 130 ---KQPIILTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSA 199 (482)
T ss_pred ---CCCEEEeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHH
Confidence 1346667888888877 6666 66 77999999999999999998876665433 346667776654 55555
Q ss_pred HHHH
Q 045279 352 ANKA 355 (702)
Q Consensus 352 ~~~a 355 (702)
+...
T Consensus 200 in~L 203 (482)
T PRK04195 200 INDL 203 (482)
T ss_pred HHHH
Confidence 5443
No 166
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.9e-13 Score=153.63 Aligned_cols=167 Identities=23% Similarity=0.304 Sum_probs=127.5
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 45789999999999988876543 134566899999999999999999998742
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
+++.++++. +.+...++.+.+.+.. ..+.|+||||+|.+. ...++.||..
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt-----------~~a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS-----------TGAFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHH
Confidence 344444321 2345567788777653 346799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
|+.. ...+++|++|+.++.+.+.+++ |+. .+.|+.|+.++...++...+++.++..+ ..+..++
T Consensus 143 LEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia 207 (559)
T PRK05563 143 LEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIA 207 (559)
T ss_pred hcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9864 4466777778889999999988 885 7889999999999999998887765433 3345556
No 167
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.53 E-value=1e-13 Score=145.73 Aligned_cols=185 Identities=28% Similarity=0.389 Sum_probs=131.9
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-cccc-
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSG- 200 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g- 200 (702)
+-|+|++++|+.+..++.....+..+...+. -.++.++||+||||||||++|++||+.++.+|+.++++.+.. +|.|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 3489999999999877765433332221111 124589999999999999999999999999999999987764 6776
Q ss_pred ccHHHHHHHHHHHH------------------------------------------------------------------
Q 045279 201 ASEENIRDLFSKAY------------------------------------------------------------------ 214 (702)
Q Consensus 201 ~~~~~~~~~f~~a~------------------------------------------------------------------ 214 (702)
..+..++.+|+.|.
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 34455555555440
Q ss_pred -------------------------------------------------------------------------hhCCceE
Q 045279 215 -------------------------------------------------------------------------RTAPSIV 221 (702)
Q Consensus 215 -------------------------------------------------------------------------~~~p~il 221 (702)
.....|+
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0134599
Q ss_pred EechhhHhhhcchhhh-HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecC----CCCCCCccccC
Q 045279 222 FIDEIDAIASKRENLQ-REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATN----RPDAVDPALRR 296 (702)
Q Consensus 222 ~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn----~~~~ld~al~r 296 (702)
||||||.++....... +-...-+...||..+++....+..+ .-...++++|++.- .|.++=|.|.-
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~---------~v~T~~ILFI~~GAF~~~kp~DlIPEl~G 322 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYG---------MVKTDHILFIAAGAFQLAKPSDLIPELQG 322 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecce---------eEECCceeEEecCCcCCCChhhccHHHhC
Confidence 9999999997653222 2233446778999998765543221 11245689998763 35667788865
Q ss_pred CCCcceEEEeCCCCHHHHHHHHH
Q 045279 297 PGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 297 ~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
||+.++.+..++.++...||.
T Consensus 323 --R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 323 --RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred --ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999994
No 168
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=8.5e-14 Score=149.17 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=125.4
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe----------------
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN---------------- 490 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~---------------- 490 (702)
.|++|+|++.+++.|.+.+.....+. ...+...+.++||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 48899999999999999887654322 22344467789999999999999999999976442
Q ss_pred -------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC
Q 045279 491 -------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG 559 (702)
Q Consensus 491 -------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 559 (702)
+..+.+.. . .-+...+|.+++.+.. ..+.|+||||+|.+. ....|.||..|+.
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~~aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------ERAANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------HHHHHHHHHHhhc
Confidence 11121110 0 1223457888877754 345799999999998 7778999999986
Q ss_pred CCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHH
Q 045279 560 ADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGAD 637 (702)
Q Consensus 560 ~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~d 637 (702)
.. .++++|.+|+.++.+.|++++ |+ ..++|++|+.++...++... .+.. ......++ .++.|..+.-
T Consensus 144 p~--~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la--~~s~G~~~~A 210 (394)
T PRK07940 144 PP--PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAA--RASQGHIGRA 210 (394)
T ss_pred CC--CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHH--HHcCCCHHHH
Confidence 43 344555556668999999988 98 69999999999877777532 2222 22344455 4555655533
No 169
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.5e-13 Score=153.39 Aligned_cols=191 Identities=21% Similarity=0.292 Sum_probs=131.7
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~ 191 (702)
+-+|++|+|++.+++.|...+.. + +.++.+||+||+||||||+|+++|+.+++.- ..-+|
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 33899999999999999987732 1 2345589999999999999999999886421 00011
Q ss_pred hhhhcc---------ccc---ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 045279 192 TEVVSG---------VSG---ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDES 255 (702)
Q Consensus 192 ~~l~~~---------~~g---~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 255 (702)
..+..+ ..+ ..-..++.+.+.+. .....|++|||+|.|... ..+.|+..|++
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-----------A~NALLK~LEE- 144 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-----------GFNALLKIVEE- 144 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-----------HHHHHHHHHhc-
Confidence 111100 001 11233444444432 234469999999988643 34568888886
Q ss_pred ccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HH
Q 045279 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LV 334 (702)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~ 334 (702)
.++++++|.+|+.+..+.+.+++ |+ .++.|..++.++..+.+..+++......+.. +.
T Consensus 145 ------------------pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~ 203 (584)
T PRK14952 145 ------------------PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYP 203 (584)
T ss_pred ------------------CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 35568899999989999999999 97 7799999999999999998887766544433 33
Q ss_pred HHHhhCCCCCHHHHHHHHHHHH
Q 045279 335 KIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 335 ~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+++. .+.+.+++.++++.++
T Consensus 204 ~Ia~~-s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 204 LVIRA-GGGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHH-cCCCHHHHHHHHHHHH
Confidence 44444 4457777777777654
No 170
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.53 E-value=3.8e-13 Score=131.46 Aligned_cols=193 Identities=23% Similarity=0.343 Sum_probs=138.3
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
....+.+++|+|.+..|+.|.+.....+. -.+.+++||+|++|||||++++++..++ +..++.+...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~---------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ---------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc---------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 34567999999999999999988866443 3478999999999999999999998876 56788888777
Q ss_pred hhcccccccHHHHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+. .+..+++... ...+-|||+||+.. ... + .-...|...|++. ..
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsF--e~~-----d---~~yk~LKs~LeGg---------------le 136 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSF--EEG-----D---TEYKALKSVLEGG---------------LE 136 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCC--CCC-----c---HHHHHHHHHhcCc---------------cc
Confidence 62 3445555544 22456999999731 111 1 1124466666642 22
Q ss_pred CCCCeEEEEEecCCCCCCC---------------c--------cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC
Q 045279 273 SKPGYVLVIGATNRPDAVD---------------P--------ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld---------------~--------al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~ 329 (702)
..|.||++.+|+|+-..++ + +|.. ||.-.+.|..|+.++-.+|++.+++...+..
T Consensus 137 ~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~ 214 (249)
T PF05673_consen 137 ARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLEL 214 (249)
T ss_pred cCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3588999999999843222 1 2333 9999999999999999999999998777665
Q ss_pred cc-c----HHHHHhhCCCCCHHHHHHHHHH
Q 045279 330 SF-D----LVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 330 ~~-~----~~~la~~t~g~~~~dl~~l~~~ 354 (702)
+. . ....+....|.||+-..++++.
T Consensus 215 ~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 215 DEEELRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred CHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 42 2 2335566677888877776654
No 171
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.5e-13 Score=159.13 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=132.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~ 191 (702)
..+|++|+|++.+++.|...+.. -+..+.+||+||+|||||++|+.||+.+++.- .+-+|
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 34999999999999999887732 12345589999999999999999999996421 01111
Q ss_pred hhhhcc---------ccc---ccHHHHHHHHHHH----HhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 045279 192 TEVVSG---------VSG---ASEENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDES 255 (702)
Q Consensus 192 ~~l~~~---------~~g---~~~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 255 (702)
..+..+ ..+ .....++.+.+.+ ......|+||||+|.|... ..+.||+.|++.
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-----------a~NaLLK~LEEp 147 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ-----------GFNALLKIVEEP 147 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-----------HHHHHHHHHhCC
Confidence 111111 001 1123344443333 2345569999999999743 345688888863
Q ss_pred ccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HH
Q 045279 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LV 334 (702)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~ 334 (702)
+.+++||++|+.++.|-+.|++ |+ .++.|..++.++...+|..+++...+..+.. +.
T Consensus 148 -------------------P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~ 205 (824)
T PRK07764 148 -------------------PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLP 205 (824)
T ss_pred -------------------CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4568888888888889999999 98 7899999999999999998887766554333 45
Q ss_pred HHHhhCCCCCHHHHHHHHHHHH
Q 045279 335 KIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 335 ~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+++...| +.+++.++++..+
T Consensus 206 lLa~~sgG-dlR~Al~eLEKLi 226 (824)
T PRK07764 206 LVIRAGGG-SVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHcCC-CHHHHHHHHHHHH
Confidence 55555554 6777777666544
No 172
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=1.3e-13 Score=153.92 Aligned_cols=186 Identities=20% Similarity=0.256 Sum_probs=133.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
...+|++++|++.+++.|...+.. .+.+.++||+||+|||||++|+++|+.+++.
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~s 78 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQS 78 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHH
Confidence 356799999999999988876643 1456678999999999999999999987542
Q ss_pred -----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 491 -----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 491 -----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++.++.+. +.+...++.++..+.. ....|+||||+|.+. ...++.||.
T Consensus 79 Cr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls-----------~~A~NALLK 141 (709)
T PRK08691 79 CTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS-----------KSAFNAMLK 141 (709)
T ss_pred HHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC-----------HHHHHHHHH
Confidence 12222211 2234467777766532 345799999999987 678899999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~s 634 (702)
.|+... ..+.+|++|+.+..+.+.+++ || ..+.|+.++.++...+++..+++.++.-+ ..+..|+.. + +-+
T Consensus 142 tLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~--A-~Gs 213 (709)
T PRK08691 142 TLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA--A-AGS 213 (709)
T ss_pred HHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH--h-CCC
Confidence 998643 456777788888888888876 88 57888999999999999999888765433 235566622 2 223
Q ss_pred HHHHHHHHHHHH
Q 045279 635 GADLAAMMNEAA 646 (702)
Q Consensus 635 g~dl~~~~~~a~ 646 (702)
-+++.+++..++
T Consensus 214 lRdAlnLLDqai 225 (709)
T PRK08691 214 MRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 173
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.53 E-value=4.2e-15 Score=158.23 Aligned_cols=267 Identities=21% Similarity=0.221 Sum_probs=164.3
Q ss_pred HhhhhhccccchhhhhhhhhccccccccccccccccchhhhhhhhhhhhhcCCCCCC------cccccCCCCCCcccccC
Q 045279 55 KSMLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKEESVKGGMGLG------AEELKGKEGPRFQDLGG 128 (702)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~G 128 (702)
.+++++++.++++............. +..+.|+...+...+.+....++.....+. ..........+|++|+|
T Consensus 171 ~s~~l~vl~~~kp~~~~~~~~~~~~~-i~~~~pv~~~g~l~G~v~~~~~~~~l~~l~~~~~~~~~~~~~~a~y~f~~Iig 249 (560)
T COG3829 171 DSTLLEVLRTGKPIRDVVQTYNGNKI-IVNVAPVYADGQLIGVVGISKDVSELERLTRELEESEGLLRLKAKYTFDDIIG 249 (560)
T ss_pred CceehhhhhcCCcceeeeeeecCCce-eEeeccEecCCcEEEEEEeecchHHHHHHHHHHHHHhhhhccccccchhhhcc
Confidence 47778888888776655422211111 455555554444333333222221111111 00011244569999999
Q ss_pred HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc--------
Q 045279 129 MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG-------- 197 (702)
Q Consensus 129 ~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~-------- 197 (702)
-.+.+.++.+.+ +...+...+|||.|++||||..+|++|-+.. +.||+.+||+.+...
T Consensus 250 ~S~~m~~~~~~a-----------kr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFG 318 (560)
T COG3829 250 ESPAMLRVLELA-----------KRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFG 318 (560)
T ss_pred CCHHHHHHHHHH-----------HhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhC
Confidence 999999998877 3356778899999999999999999996654 689999999987654
Q ss_pred -----cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 198 -----VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 198 -----~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
|.|+....-.++|+.|..+ .||+|||..|+.. +...||..+++... ..-|+. .
T Consensus 319 ye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl~-----------LQaKLLRVLQEkei-~rvG~t-------~ 376 (560)
T COG3829 319 YEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPLP-----------LQAKLLRVLQEKEI-ERVGGT-------K 376 (560)
T ss_pred cCCccccccccCCCCcceeeccCC---eEEehhhccCCHH-----------HHHHHHHHHhhceE-EecCCC-------C
Confidence 4455443346788888665 9999999777644 34458888876432 222222 2
Q ss_pred CCCCeEEEEEecCCC--CCCCccccCCC---CcceEEEeCCCCHHHHHH----HHHHhhcCccc------C-Cccc-HHH
Q 045279 273 SKPGYVLVIGATNRP--DAVDPALRRPG---RFDREIVLGVPDENARVQ----ILSVLTRNLRV------E-GSFD-LVK 335 (702)
Q Consensus 273 ~~~~~v~vI~atn~~--~~ld~al~r~~---Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~------~-~~~~-~~~ 335 (702)
..+-+|+||||||.. +.+-..-.|.+ |+ .++.+..|+..+|.+ +...++.++.. . -..+ +..
T Consensus 377 ~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~ 455 (560)
T COG3829 377 PIPVDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALAL 455 (560)
T ss_pred ceeeEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHH
Confidence 235669999999983 23333322323 55 568889998877765 22333332211 1 1111 222
Q ss_pred -HHhhCCCCCHHHHHHHHHHHHH
Q 045279 336 -IARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 336 -la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+...++| +.|+|.+++.++..
T Consensus 456 L~~y~WPG-NVRELeNviER~v~ 477 (560)
T COG3829 456 LLRYDWPG-NVRELENVIERAVN 477 (560)
T ss_pred HHhCCCCc-hHHHHHHHHHHHHh
Confidence 3344566 77889988887764
No 174
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.52 E-value=3.6e-13 Score=154.45 Aligned_cols=136 Identities=25% Similarity=0.312 Sum_probs=90.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc------ccCc-Cc--hHHHH-HHHHHHHHhCCCeEEEEeC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL------NKYV-GE--SELAV-RTLFSRARTCSPCILFFDE 530 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~------~~~~-g~--~~~~~-~~~f~~a~~~~~~vl~iDE 530 (702)
...+++||-|.||+|||++..++|+..|..+++|+.++-. +.++ ++ ++-.+ ..-|-.|++ .+..+++||
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr-~G~WVlLDE 1619 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR-DGGWVLLDE 1619 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh-cCCEEEeeh
Confidence 4567899999999999999999999999999999987532 2222 22 11111 223445555 567899999
Q ss_pred cchhhcccCCCCchHHHHHHHHHHHhhhC------------CCCCCcEEEEEecCCC------CccCccccCCCccceEE
Q 045279 531 VDALTTKRGKEGGWVVERLLNQLLIELDG------------ADKRKGVFVIGATNRP------DVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 531 id~l~~~r~~~~~~~~~~~~~~ll~~l~~------------~~~~~~~~vI~atn~~------~~ld~a~~r~gRf~~~i 592 (702)
+.-.. +.++.-|=..||. +.-+.+..|++|-|.. ..|+..|+. ||- ++
T Consensus 1620 iNLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV 1685 (4600)
T COG5271 1620 INLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VV 1685 (4600)
T ss_pred hhhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eE
Confidence 98766 4444433333332 2345567777777753 378889988 995 67
Q ss_pred EcCCCCHHHHHHHHHHHhc
Q 045279 593 YVPLPTPDERGLILEALAR 611 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~~~ 611 (702)
++.-++.++...|...+..
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred EecccccchHHHHHHhhCC
Confidence 7777666666655555443
No 175
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.4e-13 Score=159.34 Aligned_cols=185 Identities=20% Similarity=0.220 Sum_probs=129.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
...+|++|+|++.+++.|...+.. .+.+..+||+||+|||||++|++||+.+.+.
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~s 77 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDS------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDS 77 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHH
Confidence 356899999999999988776542 1344558999999999999999999988541
Q ss_pred -------------EEEEecccccccCcCchHHHHHHHHHHH----HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHH
Q 045279 491 -------------FIHIKGPELLNKYVGESELAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQL 553 (702)
Q Consensus 491 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 553 (702)
|+.++.... .+...+|.+.+.+ ....+.|+||||+|.|. ...+|.|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt-----------~~a~NaL 140 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT-----------PQGFNAL 140 (824)
T ss_pred HHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC-----------HHHHHHH
Confidence 233322111 1233455554433 23467899999999999 7889999
Q ss_pred HHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCC
Q 045279 554 LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCEN 632 (702)
Q Consensus 554 l~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~ 632 (702)
|..|+... ..+++|++|+.++.|-+.+.+ |+ .++.|..++.++...++...+++.++..+. .+..++. .+ +
T Consensus 141 LK~LEEpP--~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~--~s-g 212 (824)
T PRK07764 141 LKIVEEPP--EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR--AG-G 212 (824)
T ss_pred HHHHhCCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-C
Confidence 99998643 467777788888888888887 88 588999999999999999988877654332 2344542 22 2
Q ss_pred CCHHHHHHHHHHH
Q 045279 633 LSGADLAAMMNEA 645 (702)
Q Consensus 633 ~sg~dl~~~~~~a 645 (702)
-+-+++.+++...
T Consensus 213 GdlR~Al~eLEKL 225 (824)
T PRK07764 213 GSVRDSLSVLDQL 225 (824)
T ss_pred CCHHHHHHHHHHH
Confidence 2334444444443
No 176
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.52 E-value=2.5e-13 Score=151.70 Aligned_cols=222 Identities=20% Similarity=0.203 Sum_probs=139.6
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEeccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKGPE 498 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~ 498 (702)
+.|.+-+...+.|..++...+. +..+...++++|+||||||++++.+..++ ...++.|+|..
T Consensus 755 D~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 3456666666666655544331 22233335699999999999999998765 25678999865
Q ss_pred ccccC----------------cC-chHHHHHHHHHHHH--hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC
Q 045279 499 LLNKY----------------VG-ESELAVRTLFSRAR--TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG 559 (702)
Q Consensus 499 l~~~~----------------~g-~~~~~~~~~f~~a~--~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 559 (702)
+...+ .| .+...+..+|.... .....||+|||||.|.... ..++..|+....
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 43321 01 12234556665542 2235699999999998532 455665555433
Q ss_pred CCCCCcEEEEEecCC---CCccCccccCCCccce-EEEcCCCCHHHHHHHHHHHhccCC-CCCCCCHHHHhhhhcCCCCC
Q 045279 560 ADKRKGVFVIGATNR---PDVMDRAVLRPGRFGK-LLYVPLPTPDERGLILEALARKKP-IDDSVDLHTIAQSKFCENLS 634 (702)
Q Consensus 560 ~~~~~~~~vI~atn~---~~~ld~a~~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~la~~~~~~~~s 634 (702)
....+++||+++|. ++.+++.+.+ ||.. .|.|++|+.+++..||+..+.... .-.+..++.+|.. . ...
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArk--V-Aq~ 971 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARK--V-ANV 971 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh--h-hhc
Confidence 23457899999986 5567787766 6653 488999999999999999887532 2223334555531 1 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCC
Q 045279 635 GADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSV 684 (702)
Q Consensus 635 g~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~ 684 (702)
+||+|.++. ++..|.... ....|+.+|+.+|+.++..+.
T Consensus 972 SGDARKALD-ILRrAgEik----------egskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 972 SGDIRKALQ-ICRKAFENK----------RGQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred CCHHHHHHH-HHHHHHhhc----------CCCccCHHHHHHHHHHHHhhh
Confidence 578887654 222232211 012688999999988775443
No 177
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.8e-13 Score=152.22 Aligned_cols=186 Identities=23% Similarity=0.296 Sum_probs=135.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+-+|++++|++.+++.+...+.. -+.++.+||+||+|||||++|+.+|+.+++.
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 44999999999999999987732 2335669999999999999999999988532
Q ss_pred ----------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 186 ----------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 186 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
++.++++. +.....++.+.+.+.. +...|++|||+|.|... ..+.|+..
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-----------a~naLLKt 142 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-----------AFNALLKT 142 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-----------HHHHHHHH
Confidence 22332211 1233456667666542 33469999999988632 34567777
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~ 331 (702)
+++ .|.++++|.+|+.+..+.+.+++ |+ ..+.|..|+.++...++...++..++..+.
T Consensus 143 LEe-------------------pp~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~ 200 (559)
T PRK05563 143 LEE-------------------PPAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYED 200 (559)
T ss_pred hcC-------------------CCCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 775 24568888888889999999999 98 678999999999999999888776654443
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
.+..++....| +.+++.++++.+..
T Consensus 201 ~al~~ia~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 201 EALRLIARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35566766665 77777777766543
No 178
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=8.3e-14 Score=154.00 Aligned_cols=168 Identities=20% Similarity=0.283 Sum_probs=123.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------------- 489 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------- 489 (702)
.+..|+++.|.+.+++.+..++.. .+.+.++||+||+|+|||++|+++|+.+.+
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~s 78 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSV 78 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 356789999999998888775532 244567999999999999999999998743
Q ss_pred ----------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 490 ----------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 490 ----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
.++.++++. ..+...+|.+...+.. ....|++|||+|.+. ....+.||.
T Consensus 79 Cr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~~A~NaLLK 141 (605)
T PRK05896 79 CESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------TSAWNALLK 141 (605)
T ss_pred HHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------HHHHHHHHH
Confidence 223333221 1223446777665543 245799999999997 667899999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHh
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIA 625 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la 625 (702)
.|+.. ...+++|++|+.+..+.+++++ |+. .+.|++++.++...++...+.+.+..- +..+..++
T Consensus 142 tLEEP--p~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La 207 (605)
T PRK05896 142 TLEEP--PKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIA 207 (605)
T ss_pred HHHhC--CCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99864 3467788888889999999988 885 899999999999999998887765432 23344555
No 179
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2e-13 Score=152.56 Aligned_cols=167 Identities=19% Similarity=0.263 Sum_probs=123.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+.+|++++|++.+++.|..++.. + +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 45799999999999988876642 1 344557999999999999999999987531
Q ss_pred ------------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHH
Q 045279 491 ------------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLL 554 (702)
Q Consensus 491 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll 554 (702)
++.++++.. .+...++.+.+.+. .....|+||||+|.+. ...+|.||
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt-----------~~A~NALL 139 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT-----------TAGFNALL 139 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC-----------HHHHHHHH
Confidence 223332211 12344555555443 2356799999999998 77899999
Q ss_pred HhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 555 IELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 555 ~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
..|+.. ..++++|++|+.++.+.+++.+ |+ .++.|..++.++....+...+++.+..-+ ..+..++
T Consensus 140 K~LEEp--p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia 206 (584)
T PRK14952 140 KIVEEP--PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVI 206 (584)
T ss_pred HHHhcC--CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999854 4577888888888999999988 87 58999999999999999988887765433 2334444
No 180
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.5e-13 Score=150.72 Aligned_cols=182 Identities=20% Similarity=0.200 Sum_probs=129.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.++..+...+.. ...+..+||+||||+|||++|+++|+.+.+
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 46899999999998887776532 134567899999999999999999998743
Q ss_pred ----------eEEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 490 ----------NFIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 490 ----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
.++.+++... . +-..++.+.+.+. ...+.|+||||+|.+. ...++.|+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt-----------~~~~n~LLk 143 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT-----------KEAFNSLLK 143 (451)
T ss_pred HHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC-----------HHHHHHHHH
Confidence 2333332111 1 1233444433322 2467899999999998 667899999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~s 634 (702)
.|+... ..+++|++||.+..+.+++.+ |+. .+.|+.++.++...++...+++.++.-+ ..++.++ .++
T Consensus 144 ~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~------~~s 212 (451)
T PRK06305 144 TLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA------RAA 212 (451)
T ss_pred HhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHc
Confidence 998643 466777788888889999988 884 7899999999999999888877664432 3345555 345
Q ss_pred HHHHHHHHHHHH
Q 045279 635 GADLAAMMNEAA 646 (702)
Q Consensus 635 g~dl~~~~~~a~ 646 (702)
++|++.+++..-
T Consensus 213 ~gdlr~a~~~Le 224 (451)
T PRK06305 213 QGSLRDAESLYD 224 (451)
T ss_pred CCCHHHHHHHHH
Confidence 667777666543
No 181
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=1.5e-13 Score=154.94 Aligned_cols=187 Identities=24% Similarity=0.295 Sum_probs=131.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE---ec----
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI---KG---- 496 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i---~~---- 496 (702)
.+..|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.--.. .|
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~ 80 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECI 80 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHH
Confidence 3568999999999998887766431 3456689999999999999999999875421000 00
Q ss_pred ------cccc--ccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCC
Q 045279 497 ------PELL--NKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRK 564 (702)
Q Consensus 497 ------~~l~--~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~ 564 (702)
.++. ......+...+|.+.+.+.. ..+.|++|||+|.+. ...++.||..|+.. ..
T Consensus 81 ~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT-----------~~A~NALLKtLEEP--P~ 147 (725)
T PRK07133 81 ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS-----------KSAFNALLKTLEEP--PK 147 (725)
T ss_pred HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC-----------HHHHHHHHHHhhcC--CC
Confidence 0110 00001234557788777654 345799999999998 67899999999864 45
Q ss_pred cEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHH
Q 045279 565 GVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 565 ~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~ 643 (702)
.+++|++|+.++.|.+.+++ ||. ++.|.+++.++...++...+.+.++..+. .+..++. .++++++.+++
T Consensus 148 ~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~------lS~GslR~Als 218 (725)
T PRK07133 148 HVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAK------LSSGSLRDALS 218 (725)
T ss_pred ceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcCCCHHHHHH
Confidence 67777888889999999988 884 89999999999999998888776654332 2455552 34445554444
Q ss_pred H
Q 045279 644 E 644 (702)
Q Consensus 644 ~ 644 (702)
.
T Consensus 219 l 219 (725)
T PRK07133 219 I 219 (725)
T ss_pred H
Confidence 3
No 182
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.51 E-value=2.5e-13 Score=150.21 Aligned_cols=184 Identities=17% Similarity=0.247 Sum_probs=130.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+-+|++++|++.+++.+...+.. -+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 34899999999999999877621 1334679999999999999999999998531
Q ss_pred ----------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 186 ----------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 186 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
++.++++. ...-..++.+...+.. +...|++|||+|.|... ..+.|+..
T Consensus 80 r~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-----------A~NaLLKt 142 (605)
T PRK05896 80 ESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-----------AWNALLKT 142 (605)
T ss_pred HHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-----------HHHHHHHH
Confidence 22222211 1122345555554432 23459999999988532 23568888
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS- 330 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~- 330 (702)
|++ .++.+++|.+|+.+..+.+.+++ |+ ..+.|..|+.++...++...+...+....
T Consensus 143 LEE-------------------Pp~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~ 200 (605)
T PRK05896 143 LEE-------------------PPKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIED 200 (605)
T ss_pred HHh-------------------CCCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 885 24568888888889999999999 98 57999999999999999988776554332
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 331 FDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..+..++..+.| +++++.++++.+
T Consensus 201 eal~~La~lS~G-dlR~AlnlLekL 224 (605)
T PRK05896 201 NAIDKIADLADG-SLRDGLSILDQL 224 (605)
T ss_pred HHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 235556666655 666666666653
No 183
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.5e-13 Score=149.08 Aligned_cols=184 Identities=26% Similarity=0.317 Sum_probs=129.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+.+|++|+|++.+++.|...+.. -+.++.+||+|||||||||+|+++|+.+.+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQ------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 44899999999999999887732 1234557999999999999999999998531
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ......++.+.+.+. ...+.|++|||+|.+.. ..++.|+..+
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLLk~L 140 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALLKTL 140 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHHHHH
Confidence 33333321 112233455444432 23456999999987642 2345677777
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
+.. +.++++|.+|+.+..+.+.+++ |+ ..+.|..|+.++....+...++...+....
T Consensus 141 Eep-------------------~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~ 198 (504)
T PRK14963 141 EEP-------------------PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPE 198 (504)
T ss_pred HhC-------------------CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 642 3447888888888999999998 88 679999999999999999888776654433
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.+..++..+.| ..+++.++++.+
T Consensus 199 Al~~ia~~s~G-dlR~aln~Lekl 221 (504)
T PRK14963 199 ALQLVARLADG-AMRDAESLLERL 221 (504)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHH
Confidence 35566666665 555665555543
No 184
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.51 E-value=2e-13 Score=147.08 Aligned_cols=168 Identities=23% Similarity=0.297 Sum_probs=123.4
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
.+..|++++|.+.+++.+...+.. ...+..+||+||||+|||++|+++|+.+.++
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~ 76 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECES 76 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence 456899999999999888775532 1345678999999999999999999987432
Q ss_pred -----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 491 -----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 491 -----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++.+++.+ ..+...++.++..+.. ..+.|++|||+|.+. ...++.|+.
T Consensus 77 c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~-----------~~~~~~Ll~ 139 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS-----------KSAFNALLK 139 (355)
T ss_pred HHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC-----------HHHHHHHHH
Confidence 33333321 1233456777776653 234699999999987 667888999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
.++.. ...+++|++|+.++.+.+++.+ |+ ..+.|++|+.++...++...+++.+..-+ ..+..++
T Consensus 140 ~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~ 205 (355)
T TIGR02397 140 TLEEP--PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIA 205 (355)
T ss_pred HHhCC--ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 88754 3466777788888888888887 88 47899999999999999999887665432 3344455
No 185
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=1.5e-13 Score=153.35 Aligned_cols=191 Identities=23% Similarity=0.265 Sum_probs=133.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE-------E-Eech
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY-------K-ISAT 192 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-------~-i~~~ 192 (702)
-+|++|+|++.+++.+...+.. -+.++.+||+|||||||||+|+.+|+.+++... . -+|.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 3899999999999999877732 123456899999999999999999999865210 0 0011
Q ss_pred hhhcc----------cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 193 EVVSG----------VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 193 ~l~~~----------~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
.+..+ ........++.+++.+.. +...|++|||+|.|... ..+.|+..+++
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-----------a~naLLK~LEe---- 145 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-----------AFNAMLKTLEE---- 145 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-----------HHHHHHHHHhC----
Confidence 11110 001223456667766542 23459999999988632 34568888875
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHH
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIA 337 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la 337 (702)
.++++.+|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...++...+.... .+..++
T Consensus 146 ---------------pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la 207 (527)
T PRK14969 146 ---------------PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLA 207 (527)
T ss_pred ---------------CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 24568888888888888888988 88 779999999999998888887665544333 345566
Q ss_pred hhCCCCCHHHHHHHHHHHHH
Q 045279 338 RSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 338 ~~t~g~~~~dl~~l~~~a~~ 357 (702)
+.+.| +.+++.++++.+..
T Consensus 208 ~~s~G-slr~al~lldqai~ 226 (527)
T PRK14969 208 RAAAG-SMRDALSLLDQAIA 226 (527)
T ss_pred HHcCC-CHHHHHHHHHHHHH
Confidence 66554 77888888776654
No 186
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.50 E-value=3.6e-12 Score=144.97 Aligned_cols=224 Identities=22% Similarity=0.323 Sum_probs=142.0
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEE
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIH 493 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~ 493 (702)
....|++++|.+...+.+...+. ...+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 45678899999887776543321 1335679999999999999999998765 357899
Q ss_pred Eecccccc-------cCcCchHH----HHHHHHHH----------HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHH
Q 045279 494 IKGPELLN-------KYVGESEL----AVRTLFSR----------ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQ 552 (702)
Q Consensus 494 i~~~~l~~-------~~~g~~~~----~~~~~f~~----------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ 552 (702)
+++..+.. .+.|.... ..+..++. ......++|||||++.+. ...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-----------~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-----------PLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------HHHHHH
Confidence 99876521 11121100 01111111 112356799999999988 667777
Q ss_pred HHHhhhCCC--------------------------CCCcEEEEEec-CCCCccCccccCCCccceEEEcCCCCHHHHHHH
Q 045279 553 LLIELDGAD--------------------------KRKGVFVIGAT-NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLI 605 (702)
Q Consensus 553 ll~~l~~~~--------------------------~~~~~~vI~at-n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~i 605 (702)
|+..|+... ....+++|++| +.++.+++++.+ ||. .++|++++.+++..|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 777775421 12235666554 568889999887 996 678999999999999
Q ss_pred HHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 606 LEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 606 l~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
++..+.+.....+.+ ++.++ .+ .+.|+..-+++..+...++.+..... .......|+.+|++++++.-+
T Consensus 362 l~~~a~~~~v~ls~eal~~L~--~y--s~~gRraln~L~~~~~~~~~~~~~~~---~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIA--RY--TIEGRKAVNILADVYGYALYRAAEAG---KENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHH--HC--CCcHHHHHHHHHHHHHHHHHHHHHhc---cCCCCeeECHHHHHHHhCCCc
Confidence 999988755432222 23333 22 34666666666656544433322100 111235799999999998765
No 187
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.50 E-value=3.2e-13 Score=154.72 Aligned_cols=181 Identities=25% Similarity=0.367 Sum_probs=124.2
Q ss_pred CCCcccccCHHHHHH---HHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLE---ELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~---~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
+.+|++++|++.++. .+...+. .....+++|+|||||||||+|+++++.++.+|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 348999999999985 3444331 1233579999999999999999999999999988887532
Q ss_pred ccccccHHHHHHHHHHHH-----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAY-----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+ ...++..+..+. .....+|||||||.+....+ +.|+..++.
T Consensus 89 ---~--i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ-----------daLL~~lE~----------------- 135 (725)
T PRK13341 89 ---G--VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ-----------DALLPWVEN----------------- 135 (725)
T ss_pred ---h--hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH-----------HHHHHHhcC-----------------
Confidence 1 122333343331 12456999999998864322 235555542
Q ss_pred CCCCCeEEEEEecCC--CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-------cccCCcc-cHHHHHhhCC
Q 045279 272 DSKPGYVLVIGATNR--PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-------LRVEGSF-DLVKIARSTP 341 (702)
Q Consensus 272 ~~~~~~v~vI~atn~--~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-------~~~~~~~-~~~~la~~t~ 341 (702)
+.+++|++|+. ...+++++++ |+ ..+.|++++.+++..+++..+.. ..+.... .+..+++...
T Consensus 136 ----g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~ 208 (725)
T PRK13341 136 ----GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVAN 208 (725)
T ss_pred ----ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCC
Confidence 34778877643 4578999998 86 67999999999999999987762 2222222 3566777664
Q ss_pred CCCHHHHHHHHHHHH
Q 045279 342 GFVGADLAALANKAG 356 (702)
Q Consensus 342 g~~~~dl~~l~~~a~ 356 (702)
| +.|.+.++++.++
T Consensus 209 G-D~R~lln~Le~a~ 222 (725)
T PRK13341 209 G-DARSLLNALELAV 222 (725)
T ss_pred C-CHHHHHHHHHHHH
Confidence 4 6777777777655
No 188
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.50 E-value=8e-14 Score=146.62 Aligned_cols=185 Identities=29% Similarity=0.402 Sum_probs=132.4
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-cccc-
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSG- 200 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g- 200 (702)
..|+|++++|+.+..++....++..+...+.. ..+.++||+||||||||++|+.||+.++.+|+.++++.+.. +|.|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 34999999999999888654433322221111 13589999999999999999999999999999999998875 6777
Q ss_pred ccHHHHHHHHHHHH------------------------------------------------------------------
Q 045279 201 ASEENIRDLFSKAY------------------------------------------------------------------ 214 (702)
Q Consensus 201 ~~~~~~~~~f~~a~------------------------------------------------------------------ 214 (702)
..+..++.+|+.|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 33445555555551
Q ss_pred ------------------------------------------------------------------------hhCCceEE
Q 045279 215 ------------------------------------------------------------------------RTAPSIVF 222 (702)
Q Consensus 215 ------------------------------------------------------------------------~~~p~il~ 222 (702)
.....|+|
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01335999
Q ss_pred echhhHhhhcchhh-hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecC----CCCCCCccccCC
Q 045279 223 IDEIDAIASKRENL-QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATN----RPDAVDPALRRP 297 (702)
Q Consensus 223 iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn----~~~~ld~al~r~ 297 (702)
|||||.++...++. .+-...-+...||..+++....+..+ .-...+|++|++.- .|.++-|.|.-
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~---------~i~T~~ILFI~~GAF~~~kp~DlIPEl~G- 324 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYG---------MVKTDHILFIASGAFHVSKPSDLIPELQG- 324 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecce---------eEECCceeEEecCCcCCCChhhccHHHhC-
Confidence 99999999765322 22333446778999998755433221 11245689998763 35677788866
Q ss_pred CCcceEEEeCCCCHHHHHHHHH
Q 045279 298 GRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 298 ~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
||+.++.+..++.++..+||.
T Consensus 325 -R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 325 -RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred -ccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999994
No 189
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=4.9e-13 Score=150.82 Aligned_cols=191 Identities=21% Similarity=0.307 Sum_probs=133.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE---Eechhh--
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK---ISATEV-- 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---i~~~~l-- 194 (702)
+-+|++|+|++.+++.|...+.. -+.++.+||+||+|||||++|+++|+.+.+.-.. -.|...
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKS------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 44999999999999999987732 1335668999999999999999999998653210 011110
Q ss_pred --------h--cccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 195 --------V--SGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 195 --------~--~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
. .+........++.+.+.+.. +...|++|||+|.|... ..+.|+..|++
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-----------A~NALLKtLEE------ 144 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-----------AFNALLKTLEE------ 144 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------HHHHHHHHhhc------
Confidence 0 00001123446666666542 34469999999988632 35568888886
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhh
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARS 339 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~ 339 (702)
.|+.+++|.+|+.++.|.+.+++ |+ .++.|..|+.++...++...+...++....+ +..++..
T Consensus 145 -------------PP~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l 208 (725)
T PRK07133 145 -------------PPKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL 208 (725)
T ss_pred -------------CCCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 25568888889889999999999 99 5799999999999999988777665543333 5556666
Q ss_pred CCCCCHHHHHHHHHHHH
Q 045279 340 TPGFVGADLAALANKAG 356 (702)
Q Consensus 340 t~g~~~~dl~~l~~~a~ 356 (702)
+.| +.+++..+++.+.
T Consensus 209 S~G-slR~AlslLekl~ 224 (725)
T PRK07133 209 SSG-SLRDALSIAEQVS 224 (725)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 555 6677666666543
No 190
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=4.3e-13 Score=151.51 Aligned_cols=185 Identities=23% Similarity=0.293 Sum_probs=134.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++|+|++++++.|...+.. + +.++.+||+||+|+|||++|+++|+.+++.
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 4899999999999999987732 1 345668999999999999999999998642
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++.+ ......++.+.+.+.. ....|++|||+|.|... ..+.|+..|
T Consensus 81 ~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-----------a~naLLk~L 143 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-----------AFNALLKTL 143 (576)
T ss_pred HHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-----------HHHHHHHHH
Confidence 22222211 1123455666665532 23359999999988642 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .++++++|.+|+.+..|.+.+++ |+ ..+.|..++.++....+...++...+..+.
T Consensus 144 Ee-------------------pp~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~ 201 (576)
T PRK14965 144 EE-------------------PPPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDA 201 (576)
T ss_pred Hc-------------------CCCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHH
Confidence 86 24568899999999999999999 88 679999999999998888888776654333
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
.+..+++...| +.+++.++++.+..
T Consensus 202 al~~la~~a~G-~lr~al~~Ldqlia 226 (576)
T PRK14965 202 ALALVARKGDG-SMRDSLSTLDQVLA 226 (576)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 35556666665 66777777665543
No 191
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.50 E-value=4.9e-13 Score=143.05 Aligned_cols=295 Identities=21% Similarity=0.198 Sum_probs=169.4
Q ss_pred hhhhccccchhhhhhhhhccccccccccccccccchhhhhhhh---hhhhhc--CCCCCCcccccCCCCCCc-ccccCHH
Q 045279 57 MLRDSYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMK---KEESVK--GGMGLGAEELKGKEGPRF-QDLGGME 130 (702)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~-~~i~G~~ 130 (702)
.+++++|.+......+--.+..+-.|+.|+.+++.-....... ..+... ....+.... .-.-.+ +-++|++
T Consensus 7 ~~~c~fc~~~~~~~~~~~~~~~~~ic~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~i~~~L~~~ViGQe 83 (413)
T TIGR00382 7 TLYCSFCGKSQDEVRKLIAGPGVYICDECIELCHDILEEELGTRKESKEYEEEFELSYLPTPK---EIKAHLDEYVIGQE 83 (413)
T ss_pred CeecCCCCCChhhcccccCCCCCcCCCchHHHHHHHHHHHhhhccccccchhhccccCCCCHH---HHHHHhcceecCHH
Confidence 3467888887655555555655678888988776443221100 000000 000010000 000022 3469999
Q ss_pred HHHHHHHHHhhhhccCCCc----ccccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccccH-
Q 045279 131 SVLEELKMEVIVPLYHPQL----PQWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGASE- 203 (702)
Q Consensus 131 ~~k~~l~~~v~~~~~~~~~----~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~~~- 203 (702)
++++.+...+......-.. ....++ ....++||+||||||||++|+++|..++.+|..++++.+.. +|.|...
T Consensus 84 ~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e 163 (413)
T TIGR00382 84 QAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVE 163 (413)
T ss_pred HHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHH
Confidence 9999998766332222110 000011 13568999999999999999999999999999999988753 5777643
Q ss_pred HHHHHHHHHH----HhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 045279 204 ENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 204 ~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
..+..++..+ ....++||||||||.+.....+. .+-.+..+.+.||..|++....+.+.++... ...
T Consensus 164 ~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~------~~~ 237 (413)
T TIGR00382 164 NILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKH------PYQ 237 (413)
T ss_pred HHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccc------cCC
Confidence 3334443322 23356799999999998753321 1112235677788888754332222111110 012
Q ss_pred eEEEEEecCCC---------------------------C-----------------------CCCccccCCCCcceEEEe
Q 045279 277 YVLVIGATNRP---------------------------D-----------------------AVDPALRRPGRFDREIVL 306 (702)
Q Consensus 277 ~v~vI~atn~~---------------------------~-----------------------~ld~al~r~~Rf~~~i~~ 306 (702)
+.++|.|+|.. + .+.|+|.. |++.++.|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 35555555540 0 13466666 99999999
Q ss_pred CCCCHHHHHHHHHHh----hcCc-------cc--CCcc-cHHHHHhh--CCCCCHHHHHHHHHHHHHHHHHH
Q 045279 307 GVPDENARVQILSVL----TRNL-------RV--EGSF-DLVKIARS--TPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 307 ~~p~~~er~~Il~~~----~~~~-------~~--~~~~-~~~~la~~--t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
.+.+.+++.+|+... .+++ .+ .... .+..+++. ...+-.|.|+.+++......+..
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 999999999998752 2221 11 1111 24456654 45566778888877766554443
No 192
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=4.4e-13 Score=149.10 Aligned_cols=183 Identities=20% Similarity=0.242 Sum_probs=126.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------------- 185 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------------- 185 (702)
+.+|++|+|++.+++.|...+.. + +-...+||+||||||||++|+.+|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 34899999999999999877732 1 224679999999999999999999998653
Q ss_pred ----------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 186 ----------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 186 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
++.+++.. ...-..++.+.+.+. .+...|+||||+|.|... ..+.|+..
T Consensus 80 ~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-----------a~naLLk~ 142 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-----------AFNALLKT 142 (624)
T ss_pred HHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-----------HHHHHHHH
Confidence 23333211 011123333332221 234569999999988632 24567887
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF 331 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~ 331 (702)
+++. ++++++|++||.+..+.+.+++ |+ .++.|..++.++...++...+.......+.
T Consensus 143 LEEP-------------------~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~ 200 (624)
T PRK14959 143 LEEP-------------------PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDP 200 (624)
T ss_pred hhcc-------------------CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 7752 3458888899988889889998 98 578999999999999998877766543333
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
.+..+++.+.| +.+++.++++.
T Consensus 201 eal~lIA~~s~G-dlR~Al~lLeq 223 (624)
T PRK14959 201 AAVRLIARRAAG-SVRDSMSLLGQ 223 (624)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHH
Confidence 35556666554 55555555543
No 193
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3.9e-13 Score=145.25 Aligned_cols=186 Identities=23% Similarity=0.267 Sum_probs=127.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc----
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL---- 499 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l---- 499 (702)
.+..|++++|.+.+++.+...+.. + ..+.++|||||||+|||++|+++|+.+..+.....+..+
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~ 79 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI 79 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce
Confidence 356789999999998877775532 1 445789999999999999999999987542111100000
Q ss_pred --cccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 500 --LNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 500 --~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
.+.....+...++.+++.+.. ..+.|+||||+|.+. ...++.|+..++.. ...+++|++|+
T Consensus 80 ~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~-----------~~~~~~ll~~le~~--~~~~~~Il~~~ 146 (367)
T PRK14970 80 FELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS-----------SAAFNAFLKTLEEP--PAHAIFILATT 146 (367)
T ss_pred EEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC-----------HHHHHHHHHHHhCC--CCceEEEEEeC
Confidence 011111234567777776643 245799999999887 55678888888753 34456667788
Q ss_pred CCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHH
Q 045279 574 RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 574 ~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~ 643 (702)
.+..+.+++.+ |+. .+.|+.|+.++...++...+.+.++. .+..++.++. .+++|++.+++
T Consensus 147 ~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~------~~~gdlr~~~~ 208 (367)
T PRK14970 147 EKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQ------KADGALRDALS 208 (367)
T ss_pred CcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------hCCCCHHHHHH
Confidence 88888898877 774 78999999999999999888876653 2334555552 24456555555
No 194
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=2.8e-13 Score=152.99 Aligned_cols=167 Identities=23% Similarity=0.257 Sum_probs=125.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|++++|++.+++.|...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 45799999999999888876542 1445668999999999999999999987532
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.+++.. ..+...++.+.+.+.. ....|+||||+|.+. ...+|.||..
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt-----------~~a~naLLk~ 142 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS-----------TNAFNALLKT 142 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC-----------HHHHHHHHHH
Confidence 33333221 1234457777766643 345799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
|+.. ..++++|++|+.++.|.+.+++ |+ ..+.|..++.++....+...+++.++..+ ..+..++
T Consensus 143 LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la 207 (576)
T PRK14965 143 LEEP--PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVA 207 (576)
T ss_pred HHcC--CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9864 4567788888999999999988 88 48899999999988888888887665432 3345555
No 195
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.49 E-value=9.5e-13 Score=145.66 Aligned_cols=191 Identities=20% Similarity=0.267 Sum_probs=121.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
..+++||||||||||+|++++++++ +..++.+++.++...++.........-|..... .+.+|+|||++.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~ 226 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK 226 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC
Confidence 4568999999999999999999987 566888998887665443322111122222222 5679999999998754
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc---cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhcc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV---MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~---ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
+ ..+..|+..++........+||+++..|.. +++.+.+ ||. ..+.+++|+.++|..|++..+..
T Consensus 227 ~---------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~ 295 (450)
T PRK00149 227 E---------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEE 295 (450)
T ss_pred H---------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHH
Confidence 2 122333333333222233455544444443 6788877 996 58999999999999999999887
Q ss_pred CCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 613 KPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 613 ~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.++.. +..++.+|.+ . .=+.++|..+++.....+.... ..|+.+.+.+++..+
T Consensus 296 ~~~~l~~e~l~~ia~~--~-~~~~R~l~~~l~~l~~~~~~~~------------~~it~~~~~~~l~~~ 349 (450)
T PRK00149 296 EGIDLPDEVLEFIAKN--I-TSNVRELEGALNRLIAYASLTG------------KPITLELAKEALKDL 349 (450)
T ss_pred cCCCCCHHHHHHHHcC--c-CCCHHHHHHHHHHHHHHHHhhC------------CCCCHHHHHHHHHHh
Confidence 55432 3345666632 1 2245677777776654433221 157777777777754
No 196
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=3e-13 Score=149.12 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=126.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|+++.|++.+...+...+.. ...+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 45789999999999888776632 1344557899999999999999999987531
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.++++. ..+...++.+.+.+.. ..+.|++|||+|.+. ...++.|+..
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt-----------~~a~naLLk~ 142 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT-----------KEAFNALLKT 142 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC-----------HHHHHHHHHH
Confidence 12221110 1223345666655543 346799999999997 6778899999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+++|++|+.++.+.+++.+ |+. .+.|++++.++...++...++..++..+ ..+..++ .+++
T Consensus 143 LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La------~~s~ 211 (486)
T PRK14953 143 LEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA------QASE 211 (486)
T ss_pred HhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcC
Confidence 9864 3345666677778888888887 884 7999999999999999999888765433 2344555 2344
Q ss_pred HHHHHHHHHH
Q 045279 636 ADLAAMMNEA 645 (702)
Q Consensus 636 ~dl~~~~~~a 645 (702)
++++.+++..
T Consensus 212 G~lr~al~~L 221 (486)
T PRK14953 212 GGMRDAASLL 221 (486)
T ss_pred CCHHHHHHHH
Confidence 5555555543
No 197
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.48 E-value=2.7e-13 Score=147.21 Aligned_cols=194 Identities=24% Similarity=0.319 Sum_probs=149.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~ 191 (702)
+-+|++++|++.+.+.|...+.. -+-.+.+||.||.||||||+||.+|+.+++.- ....|
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALEN------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHh------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 44899999999999999988733 23457799999999999999999999997542 11222
Q ss_pred hhhhcc----------cccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG----------VSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~----------~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ -....-..++.+.+++. .+.+.|++|||+|.|.. ..++.||..+++
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEE--- 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEE--- 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhccccc---
Confidence 233322 11223456777777764 23456999999998863 456778888886
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~l 336 (702)
.|.+|.+|.||+.+..+++.+++ |+ .++.|...+.++....+..++.+..+..+.+ +..+
T Consensus 146 ----------------PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~i 206 (515)
T COG2812 146 ----------------PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLI 206 (515)
T ss_pred ----------------CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHH
Confidence 57789999999999999999999 98 6699999999999999999999888877665 4455
Q ss_pred HhhCCCCCHHHHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~~~a 359 (702)
++...| +.||...+++.+....
T Consensus 207 a~~a~G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 207 ARAAEG-SLRDALSLLDQAIAFG 228 (515)
T ss_pred HHHcCC-ChhhHHHHHHHHHHcc
Confidence 655555 8899999999887654
No 198
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.48 E-value=1.5e-12 Score=139.30 Aligned_cols=184 Identities=21% Similarity=0.295 Sum_probs=121.3
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l 194 (702)
+.+|++++|.+.+++.+...+.. ....+++|+||||||||++|+++++.+. .+++.++++++
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~-------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~ 77 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDS-------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADF 77 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhh
Confidence 34799999999999999876621 1223699999999999999999999884 35678888775
Q ss_pred hcccc-------------cc-------cHHHHHHHHHHHHh-----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHH
Q 045279 195 VSGVS-------------GA-------SEENIRDLFSKAYR-----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLM 249 (702)
Q Consensus 195 ~~~~~-------------g~-------~~~~~~~~f~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 249 (702)
..... +. ....++.+...... ..+.+|+|||+|.+.... ...|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~-----------~~~L~ 146 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA-----------QQALR 146 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH-----------HHHHH
Confidence 42210 00 01122333322222 234699999999875321 22355
Q ss_pred HHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC
Q 045279 250 TCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329 (702)
Q Consensus 250 ~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~ 329 (702)
..++... ....+|.+++.+..+.+.+++ |+ ..+.+.+|+.++...++...++......
T Consensus 147 ~~le~~~-------------------~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (337)
T PRK12402 147 RIMEQYS-------------------RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDY 204 (337)
T ss_pred HHHHhcc-------------------CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5555321 124566666666677788888 87 6789999999999999998887766543
Q ss_pred c-ccHHHHHhhCCCCCHHHHHH
Q 045279 330 S-FDLVKIARSTPGFVGADLAA 350 (702)
Q Consensus 330 ~-~~~~~la~~t~g~~~~dl~~ 350 (702)
. ..+..++..+.| +.+.+..
T Consensus 205 ~~~al~~l~~~~~g-dlr~l~~ 225 (337)
T PRK12402 205 DDDGLELIAYYAGG-DLRKAIL 225 (337)
T ss_pred CHHHHHHHHHHcCC-CHHHHHH
Confidence 3 346667776643 4444433
No 199
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.48 E-value=4e-13 Score=142.24 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=110.8
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
...+..++++.|.+.++..+...+.. + ..+..++|+||||+|||++|+++++.++.+++.+++++ .
T Consensus 14 kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~ 79 (316)
T PHA02544 14 KYRPSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--C 79 (316)
T ss_pred ccCCCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--c
Confidence 33456789999999998887765531 1 23455666999999999999999999998999998876 2
Q ss_pred cCcCchHHHHHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 502 KYVGESELAVRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
. +......+........ ...++||||||+|.+.. ......|...++... .++.+|++||.+..+.+
T Consensus 80 ~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 80 R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 2 2211111222111111 13578999999998831 233444444565433 45677889999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
++.+ ||. .+.|+.|+.+++..+++.++
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9988 995 78999999999988776543
No 200
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=1.1e-12 Score=146.34 Aligned_cols=185 Identities=21% Similarity=0.265 Sum_probs=130.3
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|++++|++.+++.+...+.. .+.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C 79 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSAC 79 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 45789999999999988776543 1344567999999999999999999988542
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.++++. ..+...+|.+...+.. ..+.|+||||+|.+. ...+|.||..
T Consensus 80 ~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls-----------~~a~naLLK~ 142 (527)
T PRK14969 80 LEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS-----------KSAFNAMLKT 142 (527)
T ss_pred HHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC-----------HHHHHHHHHH
Confidence 22222211 1234457777776643 345799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+++|++|+.++.+.+.+++ |+ ..+.|+.++.++....+...+++.++..+ ..+..++. .+ +-+.
T Consensus 143 LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~--~s-~Gsl 214 (527)
T PRK14969 143 LEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLAR--AA-AGSM 214 (527)
T ss_pred HhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-CCCH
Confidence 9864 3566777788888888888877 88 68999999999999888888876655432 23455552 22 2233
Q ss_pred HHHHHHHHHHH
Q 045279 636 ADLAAMMNEAA 646 (702)
Q Consensus 636 ~dl~~~~~~a~ 646 (702)
+++.+++..++
T Consensus 215 r~al~lldqai 225 (527)
T PRK14969 215 RDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHH
Confidence 44445554443
No 201
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.47 E-value=1.1e-12 Score=145.20 Aligned_cols=199 Identities=22% Similarity=0.355 Sum_probs=125.6
Q ss_pred CCCCCccccc-CHHH--HHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Q 045279 118 KEGPRFQDLG-GMES--VLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKI 189 (702)
Q Consensus 118 ~~~~~~~~i~-G~~~--~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i 189 (702)
.+..+|++++ |... +...+.+... .| + ...++++||||||||||+|++++++++ +..++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~----~~------~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi 184 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAE----NP------G-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV 184 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHh----Cc------C-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4566899954 4332 3343433321 11 1 233679999999999999999999987 4568899
Q ss_pred echhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 190 SATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 190 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++.++...+..........-|..... .+.+|+|||++.+.+... ....++..++....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~---------~~~~l~~~~n~l~~------------ 242 (450)
T PRK00149 185 TSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER---------TQEEFFHTFNALHE------------ 242 (450)
T ss_pred EHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH---------HHHHHHHHHHHHHH------------
Confidence 99887655433322111122322222 467999999998865421 11234444443322
Q ss_pred CCCCCCCeEEEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPDA---VDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGF 343 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~---ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~ 343 (702)
.+..+||++...|.. +++++++ ||. .++.+..|+.++|..|++..+......-..+ +..++....|
T Consensus 243 -----~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~- 314 (450)
T PRK00149 243 -----AGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS- 314 (450)
T ss_pred -----CCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-
Confidence 122456666555554 7789998 985 4789999999999999999887655443333 5556655554
Q ss_pred CHHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAGN 357 (702)
Q Consensus 344 ~~~dl~~l~~~a~~ 357 (702)
+.+.|..++.....
T Consensus 315 ~~R~l~~~l~~l~~ 328 (450)
T PRK00149 315 NVRELEGALNRLIA 328 (450)
T ss_pred CHHHHHHHHHHHHH
Confidence 67777776665543
No 202
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.46 E-value=2.3e-12 Score=126.04 Aligned_cols=196 Identities=20% Similarity=0.301 Sum_probs=140.5
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGP 497 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~ 497 (702)
.....+.++++.|++..|+.|.+.....+ .-.+..++||+|+.|||||+++|++..+. +..+|++...
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl---------~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFL---------QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHH---------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 33456789999999999998877554442 22467899999999999999999999876 7788999877
Q ss_pred cccccCcCchHHHHHHHHHHHHhC-CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC--CCCCcEEEEEecCC
Q 045279 498 ELLNKYVGESELAVRTLFSRARTC-SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA--DKRKGVFVIGATNR 574 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~vI~atn~ 574 (702)
++.. +-.+++..+.. .+-|||+|++..=.. +.-...|-..|+|. ....|++|.+|+|+
T Consensus 90 ~L~~---------l~~l~~~l~~~~~kFIlf~DDLsFe~~----------d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 90 DLGD---------LPELLDLLRDRPYKFILFCDDLSFEEG----------DTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred Hhcc---------HHHHHHHHhcCCCCEEEEecCCCCCCC----------cHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 7643 44566665533 457999998652111 34456677778874 56789999999998
Q ss_pred CCccCccc----------cCCC-----------ccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhh--hhcC
Q 045279 575 PDVMDRAV----------LRPG-----------RFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQ--SKFC 630 (702)
Q Consensus 575 ~~~ld~a~----------~r~g-----------Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~--~~~~ 630 (702)
.+.+...+ ++|+ ||...|.|.+|+.++..+|++.++.+.++..+ .++..-|. ....
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 65443322 1222 99999999999999999999999998777654 23332222 1223
Q ss_pred CCCCHHHHHHHHHH
Q 045279 631 ENLSGADLAAMMNE 644 (702)
Q Consensus 631 ~~~sg~dl~~~~~~ 644 (702)
.+.||+-.++.|+.
T Consensus 231 g~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 231 GGRSGRTARQFIDD 244 (249)
T ss_pred CCCCHHHHHHHHHH
Confidence 46788877776653
No 203
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=1.1e-12 Score=144.49 Aligned_cols=186 Identities=24% Similarity=0.290 Sum_probs=133.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
.+|++++|++.+++.|...+.. | +.++.+||+||+|+|||++|+++|+.+.+.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~ 78 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQ 78 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 4899999999999999987722 2 344567999999999999999999987421
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++++ ...-..++.+...... +...|++|||+|.|... ..+.|+..+
T Consensus 79 ~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~-----------A~NALLK~L 141 (535)
T PRK08451 79 SALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE-----------AFNALLKTL 141 (535)
T ss_pred HHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-----------HHHHHHHHH
Confidence 22222111 0112455666554321 23359999999988643 345688888
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++. |.++.+|.+|+.+..+.+.+++ |+ .++.|..++.++....+...+...+.....
T Consensus 142 EEp-------------------p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~ 199 (535)
T PRK08451 142 EEP-------------------PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPE 199 (535)
T ss_pred hhc-------------------CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 863 4457788888888999999999 97 689999999999999998888776554333
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.+..++....| +.+++.++++.+...
T Consensus 200 Al~~Ia~~s~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 200 ALEILARSGNG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHcCC-cHHHHHHHHHHHHHh
Confidence 35566666555 888888888776644
No 204
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=9.6e-13 Score=147.31 Aligned_cols=191 Identities=20% Similarity=0.284 Sum_probs=132.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------e-EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------F-YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------~-~~i~~ 191 (702)
+-+|++|+|++.+++.|...+.. + +.++.+||+||||+|||++|+++|+.+++. + ..-+|
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 33899999999999999987732 1 234669999999999999999999998642 1 01111
Q ss_pred hhhhcc-------cccc---cHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG-------VSGA---SEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~-------~~g~---~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ ..|. .-..++.+.+.+. .+...|++|||+|.|... ..+.|+..+++
T Consensus 80 ~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~-----------a~naLLK~LEe--- 145 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS-----------AFNALLKTIEE--- 145 (563)
T ss_pred HHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-----------HHHHHHHhhcc---
Confidence 111111 1111 1234455544332 344569999999988632 34567777774
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~l 336 (702)
.|..+++|++|+.+..+.+++++ |+ ..+.|..++.++..+++...+.......+.+ +..+
T Consensus 146 ----------------pp~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lL 206 (563)
T PRK06647 146 ----------------PPPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWI 206 (563)
T ss_pred ----------------CCCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 24568888888888899999999 98 5799999999999999988877665543333 5556
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~ 356 (702)
++...| +.+++.++++.+.
T Consensus 207 a~~s~G-dlR~alslLdkli 225 (563)
T PRK06647 207 AYKSTG-SVRDAYTLFDQVV 225 (563)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 666555 7777777776654
No 205
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.9e-12 Score=142.89 Aligned_cols=191 Identities=23% Similarity=0.309 Sum_probs=129.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------e-EEEec
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------F-YKISA 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------~-~~i~~ 191 (702)
+-+|++++|++.+++.+...+.. -+.++.+||+||+|+|||++|+.+|+.+++. + ...+|
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 34899999999999999887722 1234568999999999999999999998631 1 01122
Q ss_pred hhhhccc----------ccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSGV----------SGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~~----------~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+. .......++.+.+.+. .+.+.|++|||+|.|... ..+.|+..+++.
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-----------a~naLLk~LEep-- 146 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-----------AFNALLKTLEEP-- 146 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-----------HHHHHHHHHhcC--
Confidence 2221110 0111233445544443 234469999999988532 235577777642
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~l 336 (702)
++.+++|.+|+.++.+.+++++ |+ ..+.|..|+.++...++...++...+..+.+ +..+
T Consensus 147 -----------------p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~L 206 (486)
T PRK14953 147 -----------------PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLL 206 (486)
T ss_pred -----------------CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3446777777778888899998 88 5799999999999999998888766544333 5556
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~ 356 (702)
+..+.| +.+++.++++.+.
T Consensus 207 a~~s~G-~lr~al~~Ldkl~ 225 (486)
T PRK14953 207 AQASEG-GMRDAASLLDQAS 225 (486)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 666554 6677777766654
No 206
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=9.6e-13 Score=148.97 Aligned_cols=181 Identities=20% Similarity=0.256 Sum_probs=129.9
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
....|+++.|.+.++..|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C 78 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC 78 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc
Confidence 3567899999999998887765431 234578999999999999999999988652
Q ss_pred -------------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHH
Q 045279 491 -------------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQL 553 (702)
Q Consensus 491 -------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 553 (702)
++.++. ..+.+...+|.+++.+.. ....|+||||+|.+. ....+.|
T Consensus 79 ~~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt-----------~~a~naL 141 (620)
T PRK14948 79 ELCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS-----------TAAFNAL 141 (620)
T ss_pred HHHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC-----------HHHHHHH
Confidence 222221 122345677888877653 345799999999998 7789999
Q ss_pred HHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCC
Q 045279 554 LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCEN 632 (702)
Q Consensus 554 l~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~ 632 (702)
|..|+.. ...+++|++|+.++.+-+.+.+ |+ ..+.|+.++.++....+...+.+.+..-+ ..+..++ .
T Consensus 142 LK~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La------~ 210 (620)
T PRK14948 142 LKTLEEP--PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVA------Q 210 (620)
T ss_pred HHHHhcC--CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH------H
Confidence 9999853 3557777788888888888887 88 57889999988888888777776544322 2344555 2
Q ss_pred CCHHHHHHHHHH
Q 045279 633 LSGADLAAMMNE 644 (702)
Q Consensus 633 ~sg~dl~~~~~~ 644 (702)
+++++++.+++.
T Consensus 211 ~s~G~lr~A~~l 222 (620)
T PRK14948 211 RSQGGLRDAESL 222 (620)
T ss_pred HcCCCHHHHHHH
Confidence 344555555443
No 207
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.46 E-value=2.1e-12 Score=129.80 Aligned_cols=186 Identities=19% Similarity=0.254 Sum_probs=120.1
Q ss_pred CCCccccc--CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 120 GPRFQDLG--GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~--G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
..+|++++ +.+.+++.+.+.+. ...+.+++|+||||||||++|+++++.+ +.+++++++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA-------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 44788886 46667777776541 2346789999999999999999999876 467889999887
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.... ..++... ..+.+|+|||+|.+..... +...+...++....
T Consensus 78 ~~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~----------------- 121 (226)
T TIGR03420 78 AQAD--------PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVRE----------------- 121 (226)
T ss_pred HHhH--------HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHH-----------------
Confidence 5321 2333322 2345999999998864321 11223333332211
Q ss_pred CCeEEEEEecCCCCCCC---ccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHH
Q 045279 275 PGYVLVIGATNRPDAVD---PALRRPGRF--DREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADL 348 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld---~al~r~~Rf--~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl 348 (702)
.+..+|+.++..+..++ +.+.+ |+ ...+.+++|+.+++..+++............ .+..++.. -+.+.+++
T Consensus 122 ~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L 198 (226)
T TIGR03420 122 AGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSL 198 (226)
T ss_pred cCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHH
Confidence 11134444343444332 67777 66 3678999999999999998876655443333 35566664 45588899
Q ss_pred HHHHHHHHH
Q 045279 349 AALANKAGN 357 (702)
Q Consensus 349 ~~l~~~a~~ 357 (702)
..+++.+..
T Consensus 199 ~~~l~~~~~ 207 (226)
T TIGR03420 199 MALLDALDR 207 (226)
T ss_pred HHHHHHHHH
Confidence 988887654
No 208
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.46 E-value=5.6e-13 Score=145.73 Aligned_cols=189 Identities=20% Similarity=0.284 Sum_probs=119.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHH-HHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESEL-AVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
..+++||||+|+|||+|++++++++ +..++.+++.++...+...... .+..+....+ .+.+|+|||++.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcC
Confidence 4568999999999999999999977 5678889888876544322111 1112222222 357999999999875
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 611 (702)
++ .....++..++........+||.++..|. .+++.+.+ ||. ..+.+++|+.++|..|++..++
T Consensus 214 ~~---------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 214 KE---------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred CH---------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 32 12223333333221223335554444454 46677777 886 4799999999999999999988
Q ss_pred cCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 612 KKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 612 ~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
..+..- +..++.+|.. . .-+.++|..+++.....|.... ..||.+.+.++|..
T Consensus 283 ~~~~~l~~e~l~~ia~~--~-~~~~r~l~~~l~~l~~~a~~~~------------~~it~~~~~~~L~~ 336 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKN--I-RSNVRELEGALNRLLAYASLTG------------KPITLELAKEALKD 336 (405)
T ss_pred HcCCCCCHHHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHH
Confidence 766543 3345667732 2 3366888888887765543321 14566566655554
No 209
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.45 E-value=2.2e-12 Score=141.14 Aligned_cols=201 Identities=23% Similarity=0.352 Sum_probs=124.9
Q ss_pred CCCCCccc-ccCHHHH--HHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Q 045279 118 KEGPRFQD-LGGMESV--LEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKI 189 (702)
Q Consensus 118 ~~~~~~~~-i~G~~~~--k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i 189 (702)
.+..+|++ ++|.+.. ...+.+.. ..+ + ...++++||||||||||+|++++++++ +..++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~----~~~------~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi 172 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVA----ENP------G-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV 172 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHH----hCc------C-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE
Confidence 35668999 5564443 22233222 111 1 234679999999999999999999887 5678899
Q ss_pred echhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 190 SATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 190 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++.++...+..........-|..... .+.+|+|||++.+.+... ....++..++....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~---------~~~~l~~~~n~~~~------------ 230 (405)
T TIGR00362 173 SSEKFTNDFVNALRNNKMEEFKEKYR-SVDLLLIDDIQFLAGKER---------TQEEFFHTFNALHE------------ 230 (405)
T ss_pred EHHHHHHHHHHHHHcCCHHHHHHHHH-hCCEEEEehhhhhcCCHH---------HHHHHHHHHHHHHH------------
Confidence 98887554332211111111222222 356999999998865321 11234444443321
Q ss_pred CCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGF 343 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~ 343 (702)
.+..+||++...|. .+++++++ ||. ..+.|+.|+.++|..|++..++........+ +..++....+
T Consensus 231 -----~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~- 302 (405)
T TIGR00362 231 -----NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS- 302 (405)
T ss_pred -----CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-
Confidence 12245555555554 46788988 885 4789999999999999999888766544433 5556765554
Q ss_pred CHHHHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAGNLA 359 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a 359 (702)
+.++|..++......+
T Consensus 303 ~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 303 NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 6777777776654433
No 210
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=7.9e-13 Score=147.98 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=123.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..|++++|++.++..|...+.. ...+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIES------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 56799999999999988876642 1345568999999999999999999987542
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.+++.. ..+-..++.+.+.+. ...+.|++|||+|.+. ...++.||..
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls-----------~~a~naLLK~ 142 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-----------NSAFNALLKT 142 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC-----------HHHHHHHHHh
Confidence 22222111 122345666665443 2456799999999998 7789999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
|+. ....+++|++|+.+..+.+++.+ |+. .+.|.+++.++...+++..+...++..+ ..+..++
T Consensus 143 LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa 207 (563)
T PRK06647 143 IEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIA 207 (563)
T ss_pred hcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 985 34567777888888889899888 885 7899999999999999888877665432 3345555
No 211
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.45 E-value=1.9e-12 Score=137.16 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=110.0
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccccc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSG 200 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g 200 (702)
-+|++++|.+.+++.+...+.. + ..++.+||+||||+|||++++++++.++.+++.+++++ .. ..
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~ 82 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-ID 82 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HH
Confidence 3899999999999999877731 1 23456677999999999999999999999999999876 11 11
Q ss_pred ccHHHHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 201 ASEENIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 201 ~~~~~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
.....+........ ...+.+++|||+|.+.... ....|...++.. ++++.
T Consensus 83 ~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~----------~~~~L~~~le~~-------------------~~~~~ 133 (316)
T PHA02544 83 FVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD----------AQRHLRSFMEAY-------------------SKNCS 133 (316)
T ss_pred HHHHHHHHHHHhhcccCCCeEEEEECcccccCHH----------HHHHHHHHHHhc-------------------CCCce
Confidence 11122222211111 1356799999998873211 112344445532 23478
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhc
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTR 323 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~ 323 (702)
+|.+||.+..+.+++++ || ..+.++.|+.+++..++..+..
T Consensus 134 ~Ilt~n~~~~l~~~l~s--R~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 134 FIITANNKNGIIEPLRS--RC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred EEEEcCChhhchHHHHh--hc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 88899999999999999 99 6789999999999988775443
No 212
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.45 E-value=2.5e-12 Score=138.60 Aligned_cols=183 Identities=22% Similarity=0.311 Sum_probs=127.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
-+|++++|++.+++.+.+.+.. -+.++.+||+||||+|||++|+++++.+...
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~ 78 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCK 78 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4899999999999999987732 1234679999999999999999999987532
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.+++.. ......++.+++.+.. +...|++|||+|.+... ..+.|+..+
T Consensus 79 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~-----------~~~~Ll~~l 141 (355)
T TIGR02397 79 EINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS-----------AFNALLKTL 141 (355)
T ss_pred HHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-----------HHHHHHHHH
Confidence 22222211 1123345667666542 23359999999887532 244577777
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .+.++++|.+|+.+..+.+.+++ |+ ..+.|+.|+.++...++...++......+.
T Consensus 142 e~-------------------~~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~ 199 (355)
T TIGR02397 142 EE-------------------PPEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDE 199 (355)
T ss_pred hC-------------------CccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 64 24457888888888888899998 88 678999999999999999888776554332
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.+..++..+.| +++.+.+.++.+
T Consensus 200 a~~~l~~~~~g-~~~~a~~~lekl 222 (355)
T TIGR02397 200 ALELIARAADG-SLRDALSLLDQL 222 (355)
T ss_pred HHHHHHHHcCC-ChHHHHHHHHHH
Confidence 34556666554 555555555443
No 213
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.45 E-value=5.2e-12 Score=143.69 Aligned_cols=209 Identities=22% Similarity=0.336 Sum_probs=124.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEE
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKI 189 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i 189 (702)
+.+|++|+|.+.+++.+...+. ...+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia-------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVA-------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHh-------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 4589999999999998876552 1234579999999999999999998765 3578999
Q ss_pred echhhhc-------ccccccHHH----HHHHHHH----------HHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHH
Q 045279 190 SATEVVS-------GVSGASEEN----IRDLFSK----------AYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQL 248 (702)
Q Consensus 190 ~~~~l~~-------~~~g~~~~~----~~~~f~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~l 248 (702)
+|..+.. .+.|..... ....+.. .......+|||||++.|.... ...|
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~-----------Q~~L 285 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL-----------QNKL 285 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH-----------HHHH
Confidence 9876521 111211110 0000100 001124599999998876433 2345
Q ss_pred HHHHhhhccccCCCCCCCC---------CCCCCCCCCeEEEEEec-CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHH
Q 045279 249 MTCMDESHRLVQPGDQKSK---------SDASDSKPGYVLVIGAT-NRPDAVDPALRRPGRFDREIVLGVPDENARVQIL 318 (702)
Q Consensus 249 l~~ld~~~~~~~~~~~~~~---------~~~~~~~~~~v~vI~at-n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il 318 (702)
+..++.....+..++.... .......+..+++|++| +.++.+++++++ || ..+.+++++.++...|+
T Consensus 286 l~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~-~~i~~~pls~edi~~Il 362 (615)
T TIGR02903 286 LKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RC-AEVFFEPLTPEDIALIV 362 (615)
T ss_pred HHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ce-eEEEeCCCCHHHHHHHH
Confidence 6666543221111110000 00111234456777655 557889999998 99 46889999999999999
Q ss_pred HHhhcCcccCCcccH-HHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 319 SVLTRNLRVEGSFDL-VKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 319 ~~~~~~~~~~~~~~~-~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+.........+. ..++..+. .++...+.+..+..
T Consensus 363 ~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~ 400 (615)
T TIGR02903 363 LNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYG 400 (615)
T ss_pred HHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHH
Confidence 998876544333333 33444332 44544444444443
No 214
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.6e-12 Score=144.51 Aligned_cols=190 Identities=23% Similarity=0.247 Sum_probs=134.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE-----------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI----------- 189 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i----------- 189 (702)
-+|++|+|++.+++.|...+.. -+.++.+||+||+|+|||++|+++|+.+++.....
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 3899999999999999987732 23456799999999999999999999986542111
Q ss_pred --echhhhccc----------ccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 190 --SATEVVSGV----------SGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 190 --~~~~l~~~~----------~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
+|..+..+. .......++.+++.+.. ....|++|||+|.|... ..+.|+..|+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~-----------a~naLLKtLE 157 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA-----------AFNALLKTLE 157 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH-----------HHHHHHHHHH
Confidence 111121110 01123456677766542 23469999999988632 3456888887
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-c
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-D 332 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~ 332 (702)
+. ++.+.+|.+|+.++.+.+.+++ |+ ..+.|..|+.++...++...++........ .
T Consensus 158 eP-------------------p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eA 215 (598)
T PRK09111 158 EP-------------------PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEA 215 (598)
T ss_pred hC-------------------CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 63 4557888888888888889998 98 679999999999999999888776655443 3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 333 ~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
+..+++.+.| +.+++.++++.+.
T Consensus 216 l~lIa~~a~G-dlr~al~~Ldkli 238 (598)
T PRK09111 216 LALIARAAEG-SVRDGLSLLDQAI 238 (598)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHH
Confidence 4555666555 6777777766553
No 215
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=2.4e-12 Score=136.66 Aligned_cols=222 Identities=23% Similarity=0.285 Sum_probs=146.1
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-----EEEEecccccccC--
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-----FIHIKGPELLNKY-- 503 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-----~~~i~~~~l~~~~-- 503 (702)
+.+-++....+...+... +....|.++++|||||||||.+++.+++++... ++.|||-.+.+.|
T Consensus 19 l~~Re~ei~~l~~~l~~~---------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPA---------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHH---------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 445555555555543332 233455679999999999999999999988443 8999997665432
Q ss_pred -------------cCchH-HHHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 504 -------------VGESE-LAVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 504 -------------~g~~~-~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
.|.+. ...+.+++.... ...-||++||+|.|..+.+ +++..|+...... ..++.+
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~v 159 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVSI 159 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEEE
Confidence 12222 223333333333 3456888999999996542 5777777665544 567889
Q ss_pred EEecCCC---CccCccccCCCcc-ceEEEcCCCCHHHHHHHHHHHhccCCC---CCCCCHHHHhhhhcCCCCCHHHHH--
Q 045279 569 IGATNRP---DVMDRAVLRPGRF-GKLLYVPLPTPDERGLILEALARKKPI---DDSVDLHTIAQSKFCENLSGADLA-- 639 (702)
Q Consensus 569 I~atn~~---~~ld~a~~r~gRf-~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~la~~~~~~~~sg~dl~-- 639 (702)
|+.+|.. +.+|+.+.+ ++ ...|.||+++.+|...|++...+.... -.+.-++.+|. . .+..++|.|
T Consensus 160 i~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~--~-~a~~~GDAR~a 234 (366)
T COG1474 160 IAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAA--L-VAAESGDARKA 234 (366)
T ss_pred EEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHH--H-HHHcCccHHHH
Confidence 9999886 478888865 44 345899999999999999998775322 12223344442 1 133444666
Q ss_pred -HHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHH
Q 045279 640 -AMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSEL 687 (702)
Q Consensus 640 -~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~ 687 (702)
.+|+.|+..|.++... .++.+|+.+|...+......+
T Consensus 235 idilr~A~eiAe~~~~~-----------~v~~~~v~~a~~~~~~~~~~~ 272 (366)
T COG1474 235 IDILRRAGEIAEREGSR-----------KVSEDHVREAQEEIERDVLEE 272 (366)
T ss_pred HHHHHHHHHHHHhhCCC-----------CcCHHHHHHHHHHhhHHHHHH
Confidence 4777888888776543 788999999976666554443
No 216
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=3.4e-12 Score=139.96 Aligned_cols=188 Identities=25% Similarity=0.342 Sum_probs=126.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---------EEEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF---------YKISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~---------~~i~~ 191 (702)
-+|++|+|++.+++.+...+.. -+.++.+||+||||+|||++|+++|+.+.+.- ...+|
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C 81 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASC 81 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHH
Confidence 4899999999999999887732 12346799999999999999999999885421 11111
Q ss_pred hhhhcc-------cccc---cHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG-------VSGA---SEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~-------~~g~---~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ +.|. .-..++.+.+... .....|++|||+|.+... ..+.|+..+++.
T Consensus 82 ~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-----------~~n~LLk~lEep-- 148 (451)
T PRK06305 82 KEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-----------AFNSLLKTLEEP-- 148 (451)
T ss_pred HHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-----------HHHHHHHHhhcC--
Confidence 111111 1111 1123333332222 245679999999988632 235677777752
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~l 336 (702)
++.+++|++|+.+..+.+.+++ |+ ..+.|..++.++...++...++..+...+. .+..+
T Consensus 149 -----------------~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L 208 (451)
T PRK06305 149 -----------------PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPI 208 (451)
T ss_pred -----------------CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3457888888888999999999 98 679999999999999998887765544333 35566
Q ss_pred HhhCCCCCHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANK 354 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~ 354 (702)
+..+.| +.+.+.++++.
T Consensus 209 ~~~s~g-dlr~a~~~Lek 225 (451)
T PRK06305 209 ARAAQG-SLRDAESLYDY 225 (451)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 766654 55555555554
No 217
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.5e-13 Score=132.77 Aligned_cols=200 Identities=26% Similarity=0.254 Sum_probs=128.5
Q ss_pred ccccchhhhhhhhhccccccccccccccccchhhhhhhhhh-hhhcCCCCCCcccccCCCCCCcccccCHHHHHHHHHHH
Q 045279 61 SYSESKITRRKSEEKNIEFEVMPRKIDLVNAKSREVEMKKE-ESVKGGMGLGAEELKGKEGPRFQDLGGMESVLEELKME 139 (702)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~k~~l~~~ 139 (702)
++|.++....++.-.+..+-.|+.|+.+++.-..+...... .......+-+.++. ..--+-++|++.+|+.|.-+
T Consensus 1 SFCgksq~~v~kliagp~v~ICdeCielc~~ii~ee~~~~~~~~~~~~lPtP~eik----~~Ld~YVIGQe~AKKvLsVA 76 (408)
T COG1219 1 SFCGKSQHEVRKLIAGPGVYICDECIELCNDIIREELKEALDEKELSELPTPKEIK----AHLDEYVIGQEQAKKVLSVA 76 (408)
T ss_pred CCCCccHHHHHHHhcCCCceehHHHHHHHHHHHHHhhhhhccchhhccCCChHHHH----HHhhhheecchhhhceeeee
Confidence 35566666666677888889999999988766544433222 10000111111110 00123479999999877644
Q ss_pred hhhhccCCCcc-cccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccccHHH-HHHHHHHHH-
Q 045279 140 VIVPLYHPQLP-QWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGASEEN-IRDLFSKAY- 214 (702)
Q Consensus 140 v~~~~~~~~~~-~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~~~~~-~~~~f~~a~- 214 (702)
|....++-... ..-.+ -...||||+||+|||||.||+.||+.+++||..-+++.|.. +|+|+.-.+ +..+++.|.
T Consensus 77 VYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaady 156 (408)
T COG1219 77 VYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADY 156 (408)
T ss_pred ehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHccc
Confidence 43222111100 00011 14578999999999999999999999999999999999865 588887555 455555543
Q ss_pred ---hhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 215 ---RTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 215 ---~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
+....|++|||||.+.....+. .+-++.-+.+.||..+++.-..+.+.++
T Consensus 157 dV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGG 212 (408)
T COG1219 157 DVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGG 212 (408)
T ss_pred CHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCC
Confidence 2345699999999999766542 2334456778899999988777765433
No 218
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.43 E-value=7.2e-12 Score=135.53 Aligned_cols=203 Identities=22% Similarity=0.263 Sum_probs=125.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~ 191 (702)
..-++++|.++.++.|...+...+. + ..+.+++|+||||||||++++.+++.+. ..+++++|
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3456899999999999987744322 1 2346799999999999999999988753 46788888
Q ss_pred hhhhcc----------cc---------cc-cHHHHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHH
Q 045279 192 TEVVSG----------VS---------GA-SEENIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250 (702)
Q Consensus 192 ~~l~~~----------~~---------g~-~~~~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 250 (702)
...... .. +. .......++.... ...+.||+|||+|.+....+ .++..|+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~ 154 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSR 154 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhc
Confidence 653221 10 10 1122333444333 23467899999999973211 12223332
Q ss_pred HHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCc-
Q 045279 251 CMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNL- 325 (702)
Q Consensus 251 ~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~- 325 (702)
..+.. .....++.+|+++|.+. .+++++.+ ||. ..+.|++|+.++..+|+...+...
T Consensus 155 ~~~~~----------------~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~ 216 (365)
T TIGR02928 155 ARSNG----------------DLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAF 216 (365)
T ss_pred ccccc----------------CCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhc
Confidence 21100 00124589999998875 68888888 774 578999999999999999877521
Q ss_pred c-cCCccc-HH---HHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 326 R-VEGSFD-LV---KIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 326 ~-~~~~~~-~~---~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
. .....+ +. .++..+.| ..+.+..+|+.|...+
T Consensus 217 ~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a 254 (365)
T TIGR02928 217 YDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIA 254 (365)
T ss_pred cCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 1 111111 22 23333344 3445555666665544
No 219
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2.1e-12 Score=145.22 Aligned_cols=190 Identities=21% Similarity=0.189 Sum_probs=132.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEe---------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIK--------- 495 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~--------- 495 (702)
+..|++++|++.+++.|...+.. -+.+.++||+||+|+|||++|+++|+.+.+.....+
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFET------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 45789999999999988876642 145668999999999999999999998864321111
Q ss_pred ----c--------ccccccC--cCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhh
Q 045279 496 ----G--------PELLNKY--VGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIEL 557 (702)
Q Consensus 496 ----~--------~~l~~~~--~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 557 (702)
| .++.... ...+...+|.+++.+.. ..+.|+||||+|.+. ...++.||..|
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls-----------~~a~naLLKtL 156 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS-----------TAAFNALLKTL 156 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC-----------HHHHHHHHHHH
Confidence 0 0111000 01124457778776653 346799999999998 77899999999
Q ss_pred hCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHH
Q 045279 558 DGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGA 636 (702)
Q Consensus 558 ~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~ 636 (702)
+... ..+++|++|+.++.+.+.+.+ |+ ..+.|..++.++...++...+++.+..-+ ..++.++. .+ +-+-+
T Consensus 157 EePp--~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~--~a-~Gdlr 228 (598)
T PRK09111 157 EEPP--PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR--AA-EGSVR 228 (598)
T ss_pred HhCC--CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--Hc-CCCHH
Confidence 8643 456677777888888888877 88 58999999999999999998887765433 33455552 22 22445
Q ss_pred HHHHHHHHH
Q 045279 637 DLAAMMNEA 645 (702)
Q Consensus 637 dl~~~~~~a 645 (702)
++.+.+..+
T Consensus 229 ~al~~Ldkl 237 (598)
T PRK09111 229 DGLSLLDQA 237 (598)
T ss_pred HHHHHHHHH
Confidence 555555443
No 220
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.43 E-value=4.2e-12 Score=142.11 Aligned_cols=166 Identities=21% Similarity=0.276 Sum_probs=112.3
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEech
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISAT 192 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~~ 192 (702)
-+.|.|.++.+++|...+...+. +..+.+.++|+|+||||||++++.+.+++ ...+++|+|.
T Consensus 754 PD~LPhREeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 47899999999999988754443 22233345699999999999999998776 2567899996
Q ss_pred hhhcc----------c------cc-ccHHHHHHHHHHHHh--hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 193 EVVSG----------V------SG-ASEENIRDLFSKAYR--TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 193 ~l~~~----------~------~g-~~~~~~~~~f~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
.+... . .| .....+..+|..... ....||+|||||.|....+ .+ |+..++
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------DV---LYnLFR 894 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------KV---LFTLFD 894 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------HH---HHHHHH
Confidence 43222 1 11 112334555655422 2346999999999986421 12 333333
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCC---CCCCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhcCc
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR---PDAVDPALRRPGRFDR-EIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~---~~~ld~al~r~~Rf~~-~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
.... ..+.+.|||++|. ++.++|++++ ||.. .+.|++|+.+++.+||...+...
T Consensus 895 ~~~~----------------s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A 952 (1164)
T PTZ00112 895 WPTK----------------INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENC 952 (1164)
T ss_pred Hhhc----------------cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 2110 1345999999987 5578899988 7643 48899999999999999887754
No 221
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.43 E-value=1.7e-12 Score=133.04 Aligned_cols=133 Identities=26% Similarity=0.312 Sum_probs=97.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc------cccccCcCchHHHH-H-------------------HHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP------ELLNKYVGESELAV-R-------------------TLFS 516 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~------~l~~~~~g~~~~~~-~-------------------~~f~ 516 (702)
+.+++|+||||||||++|+++|..++.+++.+++. ++++.|.+.....+ . ..+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 46789999999999999999999999999999765 44444443222111 1 1112
Q ss_pred HHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------------CCCcEEEEEecCCCC-----c
Q 045279 517 RARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------------KRKGVFVIGATNRPD-----V 577 (702)
Q Consensus 517 ~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------------~~~~~~vI~atn~~~-----~ 577 (702)
.|.. .+.+|+|||++.+. .++++.|+..|+... .+.++.||+|+|... .
T Consensus 101 ~A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~ 168 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHE 168 (262)
T ss_pred HHHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceec
Confidence 2333 45799999999988 778888888876421 123567899999752 5
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
+++++++ || ..+.++.|+.++-.+|++...
T Consensus 169 l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 169 TQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 6888988 99 589999999998889998765
No 222
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=2.4e-12 Score=141.72 Aligned_cols=180 Identities=19% Similarity=0.231 Sum_probs=128.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+.+|++++|++.+++.|...+.. + ..+..+|||||+|+|||++|+++|+.+.+
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 46799999999999888776532 1 34556799999999999999999998732
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.+++++- .+-..++.+...+.. ....|++|||+|.+. ...++.||..
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt-----------~~A~NALLK~ 140 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT-----------KEAFNALLKT 140 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC-----------HHHHHHHHHH
Confidence 2333332210 123456666655432 245799999999998 8889999999
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg 635 (702)
|+.. ...+.+|++|+.+..+.+++.+ |+ .++.|.+++.++....+...+++.++.. +..+..++. .++
T Consensus 141 LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~------~s~ 209 (535)
T PRK08451 141 LEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILAR------SGN 209 (535)
T ss_pred Hhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcC
Confidence 9976 3456667777888999999988 87 5889999999999999988888766543 234455552 344
Q ss_pred HHHHHHHHH
Q 045279 636 ADLAAMMNE 644 (702)
Q Consensus 636 ~dl~~~~~~ 644 (702)
+|+|.+++.
T Consensus 210 GdlR~alnl 218 (535)
T PRK08451 210 GSLRDTLTL 218 (535)
T ss_pred CcHHHHHHH
Confidence 555555443
No 223
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.9e-12 Score=137.42 Aligned_cols=190 Identities=20% Similarity=0.269 Sum_probs=127.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh-----
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV----- 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l----- 194 (702)
+.+|++++|++.+++.+...+.. | ..++++|||||||+|||++|+++++.+..+.....+..+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 34899999999999999887732 1 335689999999999999999999988642211100000
Q ss_pred -hcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 195 -VSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 195 -~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
...........+..+++.+.. +.+.|++|||+|.+... ..+.|+..+++.
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-----------~~~~ll~~le~~-------------- 135 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-----------AFNAFLKTLEEP-------------- 135 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-----------HHHHHHHHHhCC--------------
Confidence 000111223456666765532 23469999999877532 234566666541
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHH
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADL 348 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl 348 (702)
+...++|.+|+.+..+.+++.+ |+ ..+.++.|+.++...++...+...+...+ ..+..++..+.| +.+.+
T Consensus 136 -----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~ 206 (367)
T PRK14970 136 -----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDA 206 (367)
T ss_pred -----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHH
Confidence 3346677778888889999988 87 57899999999999999888877665433 335556665544 55555
Q ss_pred HHHHHHH
Q 045279 349 AALANKA 355 (702)
Q Consensus 349 ~~l~~~a 355 (702)
.+.++..
T Consensus 207 ~~~lekl 213 (367)
T PRK14970 207 LSIFDRV 213 (367)
T ss_pred HHHHHHH
Confidence 5555443
No 224
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.42 E-value=3.3e-12 Score=139.54 Aligned_cols=192 Identities=15% Similarity=0.204 Sum_probs=118.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~ 539 (702)
..+++||||+|+|||+|++++++.+ +..++.+++.++...+...........|.... ...+||+|||++.+.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh
Confidence 4579999999999999999999876 67788888877654432211111112233332 2567999999999874321
Q ss_pred CCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-C---CccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccC
Q 045279 540 KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-P---DVMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 540 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-~---~~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
..+.+-.++..+- ..... +|+|||. | ..+++.+.+ ||. ..+.+++|+.++|..|++..+...
T Consensus 220 ------~qeelf~l~N~l~---~~~k~-IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 220 ------TQEEFFHTFNSLH---TEGKL-IVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred ------hHHHHHHHHHHHH---HCCCc-EEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHc
Confidence 1222222222221 12233 4445554 4 357788887 995 788999999999999999998876
Q ss_pred CCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHHHH-HHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 614 PIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAAMA-ALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 614 ~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~~~-a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++.-+. -++.++.+. .-+.+.|.++++..+.. |.... . ...|+.+++.++++..
T Consensus 288 ~~~l~~evl~~la~~~---~~dir~L~g~l~~l~~~~a~~~~-~---------~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 288 SIRIEETALDFLIEAL---SSNVKSLLHALTLLAKRVAYKKL-S---------HQLLYVDDIKALLHDV 343 (445)
T ss_pred CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHHHh-h---------CCCCCHHHHHHHHHHh
Confidence 654333 345566321 12346666666655432 22222 1 1268899999998864
No 225
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.42 E-value=1.8e-12 Score=137.56 Aligned_cols=204 Identities=20% Similarity=0.222 Sum_probs=133.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+..|+++.|.+.++..+...+.. ....+++|+||||||||++++++++.+. .+++.+++++
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~ 78 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD 78 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc
Confidence 346788899999888877765421 1123589999999999999999999872 3455555443
Q ss_pred ccccCcCchHHHHHHHH-HHHHh-----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLF-SRART-----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f-~~a~~-----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
..+ ...++..+ ..+.. ..+.+|+|||+|.+. ...++.|+..++.... .+.+|+++
T Consensus 79 ~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~~~L~~~le~~~~--~~~lIl~~ 139 (319)
T PRK00440 79 ERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQQALRRTMEMYSQ--NTRFILSC 139 (319)
T ss_pred ccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHHHHHHHHHhcCCC--CCeEEEEe
Confidence 211 11122222 22221 245699999999987 4455667777765443 34566677
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~ 651 (702)
|.+..+.+++.+ |+. .+.|++++.++...+++.++.+.++.- +..++.++ ..+++|++.+++.....+..
T Consensus 140 ~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~------~~~~gd~r~~~~~l~~~~~~ 210 (319)
T PRK00440 140 NYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIY------YVSEGDMRKAINALQAAAAT 210 (319)
T ss_pred CCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcCCCHHHHHHHHHHHHHc
Confidence 877777777777 775 689999999999999999988766532 23455555 23566777776655432221
Q ss_pred HHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 652 DKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 652 ~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
. ..||.+++.++.....
T Consensus 211 ~-------------~~it~~~v~~~~~~~~ 227 (319)
T PRK00440 211 G-------------KEVTEEAVYKITGTAR 227 (319)
T ss_pred C-------------CCCCHHHHHHHhCCCC
Confidence 1 1577777777665443
No 226
>PRK06893 DNA replication initiation factor; Validated
Probab=99.42 E-value=6.9e-12 Score=125.85 Aligned_cols=190 Identities=13% Similarity=0.114 Sum_probs=112.5
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
.+..+|++++|.+... +...+.... .......++||||||||||+|++++|+++ +....+++....
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~~~---------~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRKNF---------IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCcccccccccCChHH--HHHHHHHHh---------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 4456999998765432 111221110 11122357999999999999999999886 345555555432
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
. .....++.... ...+|+|||++.+.+.... ...|...++.... .
T Consensus 79 ~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~~---------~~~l~~l~n~~~~----------------~ 123 (229)
T PRK06893 79 Q--------YFSPAVLENLE--QQDLVCLDDLQAVIGNEEW---------ELAIFDLFNRIKE----------------Q 123 (229)
T ss_pred h--------hhhHHHHhhcc--cCCEEEEeChhhhcCChHH---------HHHHHHHHHHHHH----------------c
Confidence 1 11122333332 3469999999988654221 1224444443321 1
Q ss_pred CCeEEEEEecCCCCCCC---ccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVD---PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAA 350 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld---~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~ 350 (702)
.+.++|++++..|..++ |.+++..++...+.++.|+.+++.+|++..+....+....+ +..+++...| +.+.+..
T Consensus 124 ~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~ 202 (229)
T PRK06893 124 GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFD 202 (229)
T ss_pred CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHH
Confidence 12245666666666554 88988333345889999999999999998876655544444 4556666554 5555555
Q ss_pred HHHH
Q 045279 351 LANK 354 (702)
Q Consensus 351 l~~~ 354 (702)
++..
T Consensus 203 ~l~~ 206 (229)
T PRK06893 203 ALDL 206 (229)
T ss_pred HHHH
Confidence 5554
No 227
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.42 E-value=4.8e-12 Score=125.79 Aligned_cols=198 Identities=26% Similarity=0.363 Sum_probs=116.7
Q ss_pred CCCCccccc-C--HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEe
Q 045279 119 EGPRFQDLG-G--MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKIS 190 (702)
Q Consensus 119 ~~~~~~~i~-G--~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~ 190 (702)
+..||++++ | .+-+...+...... + -...++++||||+|+|||.|++++++++ +..+++++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~----~-------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAEN----P-------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHS----T-------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhc----C-------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 456899985 5 33334444432211 1 1134579999999999999999998875 56788999
Q ss_pred chhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
+.++...+..........-|..... ...+|+||+++.+.... .+...|...++....
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~-~~DlL~iDDi~~l~~~~---------~~q~~lf~l~n~~~~------------- 128 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR-SADLLIIDDIQFLAGKQ---------RTQEELFHLFNRLIE------------- 128 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC-TSSEEEEETGGGGTTHH---------HHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh-cCCEEEEecchhhcCch---------HHHHHHHHHHHHHHh-------------
Confidence 8887655433222111112222222 44699999999887432 123345555554432
Q ss_pred CCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCcccH-HHHHhhCCCCC
Q 045279 271 SDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFDL-VKIARSTPGFV 344 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~-~~la~~t~g~~ 344 (702)
.++.+||++-..|. .+++.+.+ ||. ..+.+..|+.+.|.+|++..+....+.-..++ ..+++..++ +
T Consensus 129 ----~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~ 201 (219)
T PF00308_consen 129 ----SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-D 201 (219)
T ss_dssp ----TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-S
T ss_pred ----hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-C
Confidence 23355555545555 46788888 875 47899999999999999998887776655554 445555443 7
Q ss_pred HHHHHHHHHHHHH
Q 045279 345 GADLAALANKAGN 357 (702)
Q Consensus 345 ~~dl~~l~~~a~~ 357 (702)
.+.|..+++....
T Consensus 202 ~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 202 VRELEGALNRLDA 214 (219)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766544
No 228
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=7e-12 Score=141.17 Aligned_cols=191 Identities=18% Similarity=0.245 Sum_probs=128.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY------------ 187 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~------------ 187 (702)
+.+|++|+|++.+++.|...+.. -+-++.+||+||+||||||+|+.+|+.+.+.-.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 33899999999999999876621 234566999999999999999999999976310
Q ss_pred ----EEechhhhcc-------ccc---ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHH
Q 045279 188 ----KISATEVVSG-------VSG---ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLM 249 (702)
Q Consensus 188 ----~i~~~~l~~~-------~~g---~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 249 (702)
.-+|..+..+ +.+ .....++.+.+.+. .+...|++|||+|.|... ..+.|+
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-----------a~naLL 148 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-----------AFNAFL 148 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----------HHHHHH
Confidence 0011111111 111 11244555555442 234469999999988632 244688
Q ss_pred HHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC
Q 045279 250 TCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG 329 (702)
Q Consensus 250 ~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~ 329 (702)
..+++. ++.+++|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...++......
T Consensus 149 K~LEeP-------------------p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I 206 (620)
T PRK14954 149 KTLEEP-------------------PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQI 206 (620)
T ss_pred HHHhCC-------------------CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 888752 4457777777778889999998 88 7799999999999888888777655433
Q ss_pred c-ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 330 S-FDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 330 ~-~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
+ ..+..++..+.| +.+++.+.++...
T Consensus 207 ~~eal~~La~~s~G-dlr~al~eLeKL~ 233 (620)
T PRK14954 207 DADALQLIARKAQG-SMRDAQSILDQVI 233 (620)
T ss_pred CHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 3 335566666655 5665555555433
No 229
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=4e-12 Score=139.32 Aligned_cols=198 Identities=22% Similarity=0.288 Sum_probs=121.7
Q ss_pred CCCCCccccc-CHHHH--HHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Q 045279 118 KEGPRFQDLG-GMESV--LEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKI 189 (702)
Q Consensus 118 ~~~~~~~~i~-G~~~~--k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i 189 (702)
.+..+|++++ |-... ...+.+.+ ..| + ..++++||||||||||+|++++++.+ +..++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~----~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVA----KNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHH----hCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 4667999987 63332 22222222 111 1 14579999999999999999999986 4578889
Q ss_pred echhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 190 SATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 190 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++.++...+.......-..-|.......+.+|+|||++.+.+.... ...++..++....
T Consensus 167 ~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~---------q~elf~~~n~l~~------------ 225 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGV---------QTELFHTFNELHD------------ 225 (440)
T ss_pred EHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHH---------HHHHHHHHHHHHH------------
Confidence 9888765543222111111233333345789999999988643211 1223333333221
Q ss_pred CCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGF 343 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~ 343 (702)
.+..+||++...|. .+.+++.+ ||. ..+.+.+|+.+.|..|++..+....+....+ +..++....+
T Consensus 226 -----~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~- 297 (440)
T PRK14088 226 -----SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD- 297 (440)
T ss_pred -----cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-
Confidence 12345555555555 46678888 884 4678999999999999998887655443333 4556655554
Q ss_pred CHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAG 356 (702)
Q Consensus 344 ~~~dl~~l~~~a~ 356 (702)
+.+.|..++....
T Consensus 298 ~~R~L~g~l~~l~ 310 (440)
T PRK14088 298 NLRRLRGAIIKLL 310 (440)
T ss_pred CHHHHHHHHHHHH
Confidence 6677776666543
No 230
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.3e-12 Score=146.41 Aligned_cols=168 Identities=20% Similarity=0.263 Sum_probs=119.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
...+|++++|++.+++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~ 78 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCE 78 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCH
Confidence 3567899999999999887765431 344567999999999999999999987532
Q ss_pred ------------EEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHH
Q 045279 491 ------------FIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLL 554 (702)
Q Consensus 491 ------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll 554 (702)
++.++.+. ..+...++.+.+.+.. ....|+||||+|.+. ...++.||
T Consensus 79 ~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~-----------~~a~naLL 141 (585)
T PRK14950 79 MCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS-----------TAAFNALL 141 (585)
T ss_pred HHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC-----------HHHHHHHH
Confidence 12222211 1223345565554432 346799999999998 67789999
Q ss_pred HhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHh
Q 045279 555 IELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIA 625 (702)
Q Consensus 555 ~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la 625 (702)
..|+... ..+++|++|+..+.+.+.+.+ |+. .+.|+.++..+...++...+.+.++..+ ..+..++
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9998654 456667777777778888877 774 7889999999999999888877665432 2345555
No 231
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4e-12 Score=138.07 Aligned_cols=189 Identities=19% Similarity=0.246 Sum_probs=124.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK------------ 188 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~------------ 188 (702)
.+|++|+|++.+++.|...+.. + +.++.+||+|||||||||+|+++|+.+.+.-..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~ 80 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEP 80 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCC
Confidence 3899999999999999876631 1 345669999999999999999999998653100
Q ss_pred ----Eechhhhcc-------ccc---ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHH
Q 045279 189 ----ISATEVVSG-------VSG---ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250 (702)
Q Consensus 189 ----i~~~~l~~~-------~~g---~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 250 (702)
-+|..+..+ +.+ .....++.+.+.+. .....|+||||+|.+... ..+.|+.
T Consensus 81 c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-----------~~~~LLk 149 (397)
T PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-----------AFNAFLK 149 (397)
T ss_pred CCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-----------HHHHHHH
Confidence 011111111 111 11244555554442 223459999999988632 2335677
Q ss_pred HHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc
Q 045279 251 CMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS 330 (702)
Q Consensus 251 ~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~ 330 (702)
.+++. ++..++|.+|+.+..+.+.+++ |+ ..+.|..++.++....+...++.......
T Consensus 150 ~LEep-------------------~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~ 207 (397)
T PRK14955 150 TLEEP-------------------PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVD 207 (397)
T ss_pred HHhcC-------------------CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 66642 3346777777777888889988 88 57899999999999888888776554333
Q ss_pred c-cHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 331 F-DLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 331 ~-~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
. .+..++..+.| +.+.+.+.++.+
T Consensus 208 ~~al~~l~~~s~g-~lr~a~~~L~kl 232 (397)
T PRK14955 208 ADALQLIGRKAQG-SMRDAQSILDQV 232 (397)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 3 35556666654 566666655544
No 232
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5.7e-12 Score=142.71 Aligned_cols=188 Identities=26% Similarity=0.327 Sum_probs=129.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE----Ee---c--
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK----IS---A-- 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~----i~---~-- 191 (702)
-+|++++|++.+++.|...+.. + +-..++||+||+|+|||++|+++|+.+++.... -. |
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~ 80 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCEL 80 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHH
Confidence 4899999999999999987732 1 234679999999999999999999998652110 00 0
Q ss_pred -hhhh----------cccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 192 -TEVV----------SGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 192 -~~l~----------~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
..+. ..........++.+++.+.. +...|+||||+|.|... ..+.|+..+++
T Consensus 81 C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-----------a~naLLK~LEe-- 147 (620)
T PRK14948 81 CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-----------AFNALLKTLEE-- 147 (620)
T ss_pred HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH-----------HHHHHHHHHhc--
Confidence 1110 01112334567777766642 23469999999988632 34568888885
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHH
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVK 335 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~ 335 (702)
.++.+++|++|+.+..+-+.+++ |+ ..+.|..++.++....+..++.+...... ..+..
T Consensus 148 -----------------Pp~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~ 207 (620)
T PRK14948 148 -----------------PPPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTL 207 (620)
T ss_pred -----------------CCcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 24568888888888889999999 98 67999999999888888877766544332 23556
Q ss_pred HHhhCCCCCHHHHHHHHHH
Q 045279 336 IARSTPGFVGADLAALANK 354 (702)
Q Consensus 336 la~~t~g~~~~dl~~l~~~ 354 (702)
++..+.| ..+++.++++.
T Consensus 208 La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 208 VAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred HHHHcCC-CHHHHHHHHHH
Confidence 6666655 44555555543
No 233
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.40 E-value=1.6e-12 Score=133.78 Aligned_cols=182 Identities=14% Similarity=0.153 Sum_probs=116.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--cccccHHH----------HHHHHHHHHhhCCceEEe
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--VSGASEEN----------IRDLFSKAYRTAPSIVFI 223 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--~~g~~~~~----------~~~~f~~a~~~~p~il~i 223 (702)
...++|||.||||||||++++.+|..++.+++.++++..... ..|..... ..+.+..|.. .+.+|++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEe
Confidence 345789999999999999999999999999999998876544 33332110 1223444433 4568999
Q ss_pred chhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC------------CCC
Q 045279 224 DEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD------------AVD 291 (702)
Q Consensus 224 DEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~------------~ld 291 (702)
||+|...+. +...|...++.-..+...+. ......+..++||||+|+.+ .++
T Consensus 141 DEin~a~p~-----------~~~~L~~lLE~~~~l~i~~~-----~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~ 204 (327)
T TIGR01650 141 DEYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQ-----NRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN 204 (327)
T ss_pred chhhccCHH-----------HHHHHHHHhccCCeEEECCC-----ceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence 999877543 23345555653222222111 11111234599999999854 468
Q ss_pred ccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc----cHHHHHhh----------CCCCCHHHHHHHHHHHH
Q 045279 292 PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF----DLVKIARS----------TPGFVGADLAALANKAG 356 (702)
Q Consensus 292 ~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~----~~~~la~~----------t~g~~~~dl~~l~~~a~ 356 (702)
++++. ||..++.+++|+.++-.+|+............. .+..++.. ..+.+.|.+..+++.+.
T Consensus 205 ~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~~~~~ 281 (327)
T TIGR01650 205 QAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWAENAE 281 (327)
T ss_pred HHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHHHHHH
Confidence 89999 997677999999999999998765433211000 12222222 23457777777776644
No 234
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.40 E-value=1.8e-11 Score=123.40 Aligned_cols=131 Identities=22% Similarity=0.235 Sum_probs=87.9
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC------------CCccCccccCCCccc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR------------PDVMDRAVLRPGRFG 589 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~------------~~~ld~a~~r~gRf~ 589 (702)
-|+||||||+|.|. -+.+.-|-+.|+.. ---+||+|||+ |+-|+..++. |+
T Consensus 291 VpGVLFIDEvHmLD-----------IE~FsFlnrAlEse---~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl- 353 (450)
T COG1224 291 VPGVLFIDEVHMLD-----------IECFSFLNRALESE---LAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL- 353 (450)
T ss_pred ecceEEEechhhhh-----------HHHHHHHHHHhhcc---cCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-
Confidence 58899999999887 55666555666542 12378889985 4667777777 77
Q ss_pred eEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccc
Q 045279 590 KLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTI 668 (702)
Q Consensus 590 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i 668 (702)
.+|...+++.++...|++..++...+..+ ..++.|+ .+...-|=+-.-+++.-|...|-++... .|
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~--~ig~etSLRYa~qLL~pa~iiA~~rg~~-----------~V 420 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLT--DIGEETSLRYAVQLLTPASIIAKRRGSK-----------RV 420 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHH--hhchhhhHHHHHHhccHHHHHHHHhCCC-----------ee
Confidence 58888999999999999999988776543 3355565 2221222233334444444555554322 79
Q ss_pred cHHHHHHHHhhcCC
Q 045279 669 KLTHFEQALSKISP 682 (702)
Q Consensus 669 ~~~d~~~al~~~~~ 682 (702)
..+|++.|..-+..
T Consensus 421 ~~~dVe~a~~lF~D 434 (450)
T COG1224 421 EVEDVERAKELFLD 434 (450)
T ss_pred ehhHHHHHHHHHhh
Confidence 99999999887754
No 235
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.40 E-value=1.2e-11 Score=135.29 Aligned_cols=204 Identities=23% Similarity=0.225 Sum_probs=125.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l 194 (702)
....+.++|.++.+++|...+...+. -..+.+++|+||||||||++++.+++.+ +..+++++|...
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~---------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR---------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 33567899999999999887744322 1234569999999999999999999877 467888988643
Q ss_pred hc----------cccc-------cc-HHHHHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 045279 195 VS----------GVSG-------AS-EENIRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDES 255 (702)
Q Consensus 195 ~~----------~~~g-------~~-~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 255 (702)
.+ ...+ .. ...+..+.+.... ..+.||+|||+|.+..... ...+..|+..++..
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~ 169 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEY 169 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhcc
Confidence 21 1111 11 1222333333322 3457999999999872211 12344454444422
Q ss_pred ccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcc---cC
Q 045279 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLR---VE 328 (702)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~---~~ 328 (702)
. ..++.+|+++|... .+++.+.+ ||. ..+.|++++.++..+|+...+.... .-
T Consensus 170 ~------------------~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~ 229 (394)
T PRK00411 170 P------------------GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVV 229 (394)
T ss_pred C------------------CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCC
Confidence 1 12488888888753 57788877 663 5689999999999999988765321 11
Q ss_pred CcccHHHHHhhCCC--CCHHHHHHHHHHHHHHH
Q 045279 329 GSFDLVKIARSTPG--FVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ~~~~~~~la~~t~g--~~~~dl~~l~~~a~~~a 359 (702)
....+..+++.+.+ ...+.+..++..|...+
T Consensus 230 ~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 230 DDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred CHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 12224445554422 13344445565555444
No 236
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.7e-12 Score=126.35 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=143.3
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHH-cCC-CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcC
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEE-FGV-DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVG 505 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~-~~~-~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g 505 (702)
+-++|++..|+.|.-++...++....... -.. -...++||.||+|+|||.||+.||+.++.||..-++..+.. .|+|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 34788999888876555443322211100 001 12468999999999999999999999999999999988875 5899
Q ss_pred chHHH-HHHHHHHH----HhCCCeEEEEeCcchhhcccCC-CC--chHHHHHHHHHHHhhhCCC----------------
Q 045279 506 ESELA-VRTLFSRA----RTCSPCILFFDEVDALTTKRGK-EG--GWVVERLLNQLLIELDGAD---------------- 561 (702)
Q Consensus 506 ~~~~~-~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~-~~--~~~~~~~~~~ll~~l~~~~---------------- 561 (702)
+...+ +..++..| .+...+|++|||||.++.+... +- .-...-+++.||..++|..
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 86555 44555443 2346689999999999865421 11 1123678899999999831
Q ss_pred ---CCCcEEEEEecC---------------------------------------CC-----CccCccccCCCccceEEEc
Q 045279 562 ---KRKGVFVIGATN---------------------------------------RP-----DVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 562 ---~~~~~~vI~atn---------------------------------------~~-----~~ld~a~~r~gRf~~~i~~ 594 (702)
.+.++++|+..- .| ..|-|.|. ||++.+...
T Consensus 221 iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfI--GRlPvia~L 298 (408)
T COG1219 221 IQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFI--GRLPVIATL 298 (408)
T ss_pred EEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHh--cccceeeeh
Confidence 223455554332 01 12334454 499999999
Q ss_pred CCCCHHHHHHHHHH----Hhcc-------CCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 595 PLPTPDERGLILEA----LARK-------KPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652 (702)
Q Consensus 595 ~~p~~~~r~~il~~----~~~~-------~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~ 652 (702)
...+.++..+||.. +.+. ..+. .+..+..+|+..+..+-.++-||.++.+..+..+-+
T Consensus 299 ~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfe 370 (408)
T COG1219 299 EELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFE 370 (408)
T ss_pred hhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhh
Confidence 99999999988832 2221 1111 223456777666655666688888888776554444
No 237
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=2.7e-12 Score=139.37 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=125.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------------- 490 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------- 490 (702)
.+..|+++.|++.+++.|...+.. + +.+..+||+||||+|||++|+++|+.+.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~ 78 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT 78 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC
Confidence 356789999999999888775542 1 445679999999999999999999988552
Q ss_pred -------------------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHH
Q 045279 491 -------------------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVE 547 (702)
Q Consensus 491 -------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~ 547 (702)
++.+++.+ ......++.+.+.+. .....|+||||+|.+. .
T Consensus 79 ~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-----------~ 141 (397)
T PRK14955 79 EPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-----------I 141 (397)
T ss_pred CCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-----------H
Confidence 11121111 012345666655552 2345799999999998 5
Q ss_pred HHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhh
Q 045279 548 RLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQ 626 (702)
Q Consensus 548 ~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~ 626 (702)
..++.|+..++... ..+++|++|+.+..+-+++.+ |+. ++.|++++.++....+...++..+..- +..++.++
T Consensus 142 ~~~~~LLk~LEep~--~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~- 215 (397)
T PRK14955 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG- 215 (397)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH-
Confidence 67788888887543 355666667777888888877 774 789999999999888888887655432 23345555
Q ss_pred hhcCCCCCHHHHHHHHHH
Q 045279 627 SKFCENLSGADLAAMMNE 644 (702)
Q Consensus 627 ~~~~~~~sg~dl~~~~~~ 644 (702)
.++|+|++.+.++
T Consensus 216 -----~~s~g~lr~a~~~ 228 (397)
T PRK14955 216 -----RKAQGSMRDAQSI 228 (397)
T ss_pred -----HHcCCCHHHHHHH
Confidence 3355566655554
No 238
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.39 E-value=2.1e-11 Score=122.85 Aligned_cols=185 Identities=20% Similarity=0.210 Sum_probs=113.1
Q ss_pred CCCCCccccc-C-HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Q 045279 118 KEGPRFQDLG-G-MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISAT 192 (702)
Q Consensus 118 ~~~~~~~~i~-G-~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~ 192 (702)
.+..+|++++ | ...+...+.+... .....+++|+||||||||+|++++++.+. ..+.+++..
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~-------------~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALR-------------QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHh-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 4455899987 4 4555555554331 12235799999999999999999998763 446666665
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..... ...+++.... ..+|+|||++.+..... +...+...+...++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~-----~~~~lf~l~n~~~e------------------- 128 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL-----WEMAIFDLYNRILE------------------- 128 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCHH-----HHHHHHHHHHHHHH-------------------
Confidence 53211 1122222211 25899999998864321 12222233333332
Q ss_pred CCCCeE-EEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCH
Q 045279 273 SKPGYV-LVIGATNRPDA---VDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVG 345 (702)
Q Consensus 273 ~~~~~v-~vI~atn~~~~---ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~ 345 (702)
.++. +++.++++|.. +.|.+++ |+. .++.+.+|+.+++.++++..+....+.-..+ +..+++...+ +.
T Consensus 129 --~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~ 203 (235)
T PRK08084 129 --SGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EM 203 (235)
T ss_pred --cCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CH
Confidence 1223 44444455554 6799999 885 6789999999999999988666554443333 4556666555 56
Q ss_pred HHHHHHHHH
Q 045279 346 ADLAALANK 354 (702)
Q Consensus 346 ~dl~~l~~~ 354 (702)
+.+..+++.
T Consensus 204 r~l~~~l~~ 212 (235)
T PRK08084 204 RTLFMTLDQ 212 (235)
T ss_pred HHHHHHHHH
Confidence 666666554
No 239
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.39 E-value=4.6e-12 Score=129.75 Aligned_cols=148 Identities=23% Similarity=0.299 Sum_probs=97.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechh------hhcccccccHHHH-H-------------------HHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATE------VVSGVSGASEENI-R-------------------DLF 210 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~------l~~~~~g~~~~~~-~-------------------~~f 210 (702)
.+.++||+||||||||++|+++|+.++.+++.++|.. +...+.+...... . +.+
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 3568999999999999999999999999999997754 3333322211110 0 112
Q ss_pred HHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC--
Q 045279 211 SKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-- 288 (702)
Q Consensus 211 ~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-- 288 (702)
..|.. .+.+|+||||+.+.+. +...|+..|++....+ .+.... ......+.+++||+|+|+..
T Consensus 100 ~~A~~-~g~~lllDEi~r~~~~-----------~q~~Ll~~Le~~~~~i-~~~~~~--~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRSKPE-----------TNNVLLSVFEEGVLEL-PGKRGT--SRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHH-cCCEEEEcchhhCCHH-----------HHHHHHHHhcCCeEEc-cCCCCC--CceEecCCCCEEEEeeCCcccc
Confidence 22222 3359999999886643 3445777777532211 111110 00111233588999999853
Q ss_pred ---CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 289 ---AVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 289 ---~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
.+++++++ || ..+.++.|+.++..+|+....
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 57899999 99 779999999999999998764
No 240
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.9e-11 Score=137.75 Aligned_cols=185 Identities=19% Similarity=0.228 Sum_probs=126.9
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE----------E
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH----------I 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~----------i 494 (702)
+..|++++|++.++..|...+.. .+.+.++||+||+|||||++|+++|+.+.+.-.. -
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRM------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 45789999999999888775532 2455679999999999999999999988652100 0
Q ss_pred ecc--------------cccccCcC---chHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHH
Q 045279 495 KGP--------------ELLNKYVG---ESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQL 553 (702)
Q Consensus 495 ~~~--------------~l~~~~~g---~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~l 553 (702)
.|. ++. .+.| .+...++.+.+.+. .....|++|||+|.+. ....+.|
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~-~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt-----------~~a~naL 147 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNIS-EFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS-----------TAAFNAF 147 (620)
T ss_pred CCccCHHHHHHhccCCCCeE-EecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-----------HHHHHHH
Confidence 000 000 0111 12345666665552 2356799999999998 6678999
Q ss_pred HHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCC
Q 045279 554 LIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCEN 632 (702)
Q Consensus 554 l~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~ 632 (702)
|..|+.... .+++|++|+.+..+-+.+.+ |+ .++.|..++.++....+...+++.+.. .+..++.++.
T Consensus 148 LK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~------ 216 (620)
T PRK14954 148 LKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIAR------ 216 (620)
T ss_pred HHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------
Confidence 999986543 45666667777888888887 77 589999999999888888887766543 2334556662
Q ss_pred CCHHHHHHHHHH
Q 045279 633 LSGADLAAMMNE 644 (702)
Q Consensus 633 ~sg~dl~~~~~~ 644 (702)
.+++|++.++++
T Consensus 217 ~s~Gdlr~al~e 228 (620)
T PRK14954 217 KAQGSMRDAQSI 228 (620)
T ss_pred HhCCCHHHHHHH
Confidence 244555555553
No 241
>PRK06893 DNA replication initiation factor; Validated
Probab=99.38 E-value=8.1e-12 Score=125.34 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=104.6
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK 540 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~ 540 (702)
..++||||||||||++++++|+++ +.....++..... .....++.... ...+|+|||++.+.+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~~~--~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLENLE--QQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhhcc--cCCEEEEeChhhhcCChH-
Confidence 457999999999999999999876 3344444433211 11112333332 457999999999874321
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCcEEEEEec-CCCCcc---CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC
Q 045279 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGAT-NRPDVM---DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID 616 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at-n~~~~l---d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~ 616 (702)
+ ...+..++..+ ......++|.|+ ..|..+ .+.+.++.+....+.++.|+.+++.+|++..+...++.
T Consensus 109 ----~-~~~l~~l~n~~---~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 ----W-ELAIFDLFNRI---KEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred ----H-HHHHHHHHHHH---HHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 1 22333333333 222333444444 446544 47787733445788999999999999999888766554
Q ss_pred CC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 617 DS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 617 ~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
.+ .-++.++.. . .=+.+.+..++......++. ....||...+.+++.
T Consensus 181 l~~~v~~~L~~~--~-~~d~r~l~~~l~~l~~~~~~------------~~~~it~~~v~~~L~ 228 (229)
T PRK06893 181 LSDEVANFLLKR--L-DRDMHTLFDALDLLDKASLQ------------AQRKLTIPFVKEILG 228 (229)
T ss_pred CCHHHHHHHHHh--c-cCCHHHHHHHHHHHHHHHHh------------cCCCCCHHHHHHHhc
Confidence 33 334566632 1 11234444444433211111 112588888887764
No 242
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=1.1e-11 Score=124.70 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=112.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
....+++|+||+|||||++|+++++.+ +.+++.+++.++... +. ....+.+|+|||+|.+..
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~--~~~~~~~liiDdi~~l~~- 104 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FD--FDPEAELYAVDDVERLDD- 104 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hh--hcccCCEEEEeChhhcCc-
Confidence 456789999999999999999999875 667788887665321 11 122457999999998762
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCcc--ceEEEcCCCCHHHHHHHHHHHhcc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRF--GKLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf--~~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
..+..|+..++........++|++++.+. .+.+.+.+ || ...+.+|+|+.+++..++......
T Consensus 105 ----------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 105 ----------AQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred ----------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 22333444443333334444555554432 24566665 76 468999999999888898887766
Q ss_pred CCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 613 KPIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 613 ~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
.++.-+. -++.++. .. .=+.+++.++++.....|.... ..|+...+.+++.
T Consensus 173 ~~v~l~~~al~~L~~--~~-~gn~~~l~~~l~~l~~~~~~~~------------~~i~~~~~~~~l~ 224 (227)
T PRK08903 173 RGLQLADEVPDYLLT--HF-RRDMPSLMALLDALDRYSLEQK------------RPVTLPLLREMLA 224 (227)
T ss_pred cCCCCCHHHHHHHHH--hc-cCCHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHh
Confidence 5544332 3445552 11 1144777777776444333332 2799999998886
No 243
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=3.2e-12 Score=140.09 Aligned_cols=191 Identities=16% Similarity=0.195 Sum_probs=115.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCch-HHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGES-ELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
..+++||||||||||+|++++++.+ +..++.+++.++...+.... ...+..+.... ...+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~-~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY-RKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHH-HhcCCEEEEechhhhcC
Confidence 3469999999999999999999976 45788888888765543211 11122222222 23678999999999874
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc---cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV---MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~---ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 611 (702)
+. .....++..++........+||.+.+.|.. +++.+.+ ||. .++.+.+|+.+.|..|++..+.
T Consensus 209 ~~---------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 209 KT---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred cH---------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 32 112223333322222333455544455554 5566766 774 5778999999999999999987
Q ss_pred cCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 612 KKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 612 ~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
..++..+ ..++.++.. . .-+.++|..++......+.... ..|+.+.+.++|+.+
T Consensus 278 ~~~~~l~~ev~~~Ia~~--~-~~~~R~L~g~l~~l~~~~~~~~------------~~it~~~a~~~L~~~ 332 (440)
T PRK14088 278 IEHGELPEEVLNFVAEN--V-DDNLRRLRGAIIKLLVYKETTG------------EEVDLKEAILLLKDF 332 (440)
T ss_pred hcCCCCCHHHHHHHHhc--c-ccCHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHHH
Confidence 6544332 335666632 1 2245777777766543332221 146666666665543
No 244
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=1.7e-11 Score=123.34 Aligned_cols=181 Identities=14% Similarity=0.201 Sum_probs=116.2
Q ss_pred CCCCCccccc--CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 118 KEGPRFQDLG--GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 118 ~~~~~~~~i~--G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
....+|++++ +.+.++..+.+... +.....+++|+||||||||++|+++++.+ +.+++++++.
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 3445899976 34555555554431 23456789999999999999999999875 5688888887
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
.+... +. ....+.+|+|||+|.+.... ...|...++....
T Consensus 80 ~~~~~------------~~--~~~~~~~liiDdi~~l~~~~-----------~~~L~~~~~~~~~--------------- 119 (227)
T PRK08903 80 SPLLA------------FD--FDPEAELYAVDDVERLDDAQ-----------QIALFNLFNRVRA--------------- 119 (227)
T ss_pred HhHHH------------Hh--hcccCCEEEEeChhhcCchH-----------HHHHHHHHHHHHH---------------
Confidence 75321 11 12245699999999875321 1234444443221
Q ss_pred CCCCeEEEEEecCC-C--CCCCccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHH
Q 045279 273 SKPGYVLVIGATNR-P--DAVDPALRRPGRF--DREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGA 346 (702)
Q Consensus 273 ~~~~~v~vI~atn~-~--~~ld~al~r~~Rf--~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~ 346 (702)
.+..++|.+++. + ..+.+.+.+ || ...+.+++|+.+++..++..+.....+....+ +..+++..+| +.+
T Consensus 120 --~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~ 194 (227)
T PRK08903 120 --HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMP 194 (227)
T ss_pred --cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHH
Confidence 122334444443 2 135677777 76 46899999999999999988776655544433 5556664444 777
Q ss_pred HHHHHHHHH
Q 045279 347 DLAALANKA 355 (702)
Q Consensus 347 dl~~l~~~a 355 (702)
++..+++..
T Consensus 195 ~l~~~l~~l 203 (227)
T PRK08903 195 SLMALLDAL 203 (227)
T ss_pred HHHHHHHHH
Confidence 887777764
No 245
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=7.9e-12 Score=141.60 Aligned_cols=181 Identities=23% Similarity=0.272 Sum_probs=131.3
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+..|++++|++.+++.|...+.. ...+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 45789999999999888776542 134566899999999999999999998753
Q ss_pred ----------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 490 ----------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 490 ----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
+++.+++.+ ..+...++.+...+.. ....|++|||+|.+. ...++.|+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls-----------~~a~naLLK 143 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS-----------QAAFNAFLK 143 (614)
T ss_pred HHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC-----------HHHHHHHHH
Confidence 233333221 1124457777766643 235699999999998 778999999
Q ss_pred hhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCCCC
Q 045279 556 ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCENLS 634 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~~s 634 (702)
.|+... ..+++|++|+.+..+-+++++ |+ .++.|..++.++...++...+.+.++..+. .++.++. .+
T Consensus 144 ~LEepp--~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~------~s 212 (614)
T PRK14971 144 TLEEPP--SYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQ------KA 212 (614)
T ss_pred HHhCCC--CCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------Hc
Confidence 998653 456677777778889999988 88 479999999999999999888887765433 3556662 23
Q ss_pred HHHHHHHHHHH
Q 045279 635 GADLAAMMNEA 645 (702)
Q Consensus 635 g~dl~~~~~~a 645 (702)
|+|++.+++..
T Consensus 213 ~gdlr~al~~L 223 (614)
T PRK14971 213 DGGMRDALSIF 223 (614)
T ss_pred CCCHHHHHHHH
Confidence 45555555443
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.37 E-value=3.8e-12 Score=138.40 Aligned_cols=193 Identities=23% Similarity=0.295 Sum_probs=144.9
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeE-------EE----
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANF-------IH---- 493 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~-------~~---- 493 (702)
+..|+++.|++.+...|...+... +...+.||.||.|||||++||.+|+.+++.- ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 457899999999999998877543 4456789999999999999999999885431 11
Q ss_pred --Eecccccc-----cCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC
Q 045279 494 --IKGPELLN-----KYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK 562 (702)
Q Consensus 494 --i~~~~l~~-----~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 562 (702)
++...+.+ .-...+-..+|.+.+++. ...+.|.+|||+|.|. ...+|.||..++. +
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNALLKTLEE--P 146 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNALLKTLEE--P 146 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHHhccccc--C
Confidence 11111111 011234556888888875 3467899999999999 8999999999985 4
Q ss_pred CCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHH
Q 045279 563 RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAM 641 (702)
Q Consensus 563 ~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~ 641 (702)
..+|++|+||..++.+.+.+++ |+ ..+.|...+.++....+...+.+..+..+.+ +..++.. .+| +-+|.-.+
T Consensus 147 P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~--a~G-s~RDalsl 220 (515)
T COG2812 147 PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARA--AEG-SLRDALSL 220 (515)
T ss_pred ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH--cCC-ChhhHHHH
Confidence 5689999999999999999999 99 4888999999999999999999888765543 4556632 222 44888777
Q ss_pred HHHHHHH
Q 045279 642 MNEAAMA 648 (702)
Q Consensus 642 ~~~a~~~ 648 (702)
+..|...
T Consensus 221 LDq~i~~ 227 (515)
T COG2812 221 LDQAIAF 227 (515)
T ss_pred HHHHHHc
Confidence 7766643
No 247
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=2e-11 Score=133.47 Aligned_cols=201 Identities=20% Similarity=0.221 Sum_probs=121.0
Q ss_pred CCCCCccccc-CHHHHH--HHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 118 KEGPRFQDLG-GMESVL--EELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 118 ~~~~~~~~i~-G~~~~k--~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
.+..+|++++ |-.... ..+.+....+-. ..-...++++||||||+|||+|++++++.+ +..++++++
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~-------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ-------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc-------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 5667999986 533332 233322211100 011234689999999999999999999876 578889988
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
..+...+.......-...|.... ....+|+|||++.+.+.... ...+...++.+..
T Consensus 178 ~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~~---------qeelf~l~N~l~~-------------- 233 (445)
T PRK12422 178 ELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGAT---------QEEFFHTFNSLHT-------------- 233 (445)
T ss_pred HHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChhh---------HHHHHHHHHHHHH--------------
Confidence 77654332221111112333332 34569999999988643211 1123333332211
Q ss_pred CCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCH
Q 045279 272 DSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVG 345 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~ 345 (702)
.+..+|+++.+.|. .+++++++ ||. ..+.+.+|+.++|..|++..+....+....+ +..++....+ +.
T Consensus 234 ---~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-di 307 (445)
T PRK12422 234 ---EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NV 307 (445)
T ss_pred ---CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CH
Confidence 12245555544443 57899999 985 6789999999999999998887766544444 3446665443 55
Q ss_pred HHHHHHHHHH
Q 045279 346 ADLAALANKA 355 (702)
Q Consensus 346 ~dl~~l~~~a 355 (702)
+.|...+...
T Consensus 308 r~L~g~l~~l 317 (445)
T PRK12422 308 KSLLHALTLL 317 (445)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 248
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.36 E-value=3.7e-12 Score=131.14 Aligned_cols=137 Identities=16% Similarity=0.217 Sum_probs=101.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc--CcCchHHH----------HHHHHHHHHhCCCeEEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK--YVGESELA----------VRTLFSRARTCSPCILFF 528 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~--~~g~~~~~----------~~~~f~~a~~~~~~vl~i 528 (702)
...++++|.||||||||++++.+|..++.+++.+++...+.. ++|..... ....+..|.. .+++|++
T Consensus 62 ~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illl 140 (327)
T TIGR01650 62 AYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCF 140 (327)
T ss_pred hcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEe
Confidence 346789999999999999999999999999999988766554 34432111 1223445554 5688999
Q ss_pred eCcchhhcccCCCCchHHHHHHHHHHHhhhC------------CCCCCcEEEEEecCCCC------------ccCccccC
Q 045279 529 DEVDALTTKRGKEGGWVVERLLNQLLIELDG------------ADKRKGVFVIGATNRPD------------VMDRAVLR 584 (702)
Q Consensus 529 DEid~l~~~r~~~~~~~~~~~~~~ll~~l~~------------~~~~~~~~vI~atn~~~------------~ld~a~~r 584 (702)
||+|... .++++.|...|+. ...+..+.||+|+|... .++.|++.
T Consensus 141 DEin~a~-----------p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD 209 (327)
T TIGR01650 141 DEYDAGR-----------PDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD 209 (327)
T ss_pred chhhccC-----------HHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh
Confidence 9999887 5555555555542 12344678999999754 46788888
Q ss_pred CCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 585 PGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 585 ~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
||-.++.++.|+.++-.+|+.....
T Consensus 210 --RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 --RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred --heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9987889999999988888877653
No 249
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.36 E-value=2.7e-12 Score=122.05 Aligned_cols=113 Identities=27% Similarity=0.326 Sum_probs=79.2
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCC----eEEEEecccccccCcCchHHHHHHHHHHH----HhCCCeEEEEeCcch
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGA----NFIHIKGPELLNKYVGESELAVRTLFSRA----RTCSPCILFFDEVDA 533 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~----~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~ 533 (702)
|..+++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..++..+ .....+||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4567999999999999999999999986 9999999998761 11111122222211 112235999999999
Q ss_pred hhcccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCCC
Q 045279 534 LTTKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRPD 576 (702)
Q Consensus 534 l~~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~~ 576 (702)
+++..+.........+++.||+.|++. ....++++|+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 997633333344568899999998862 2346799999999643
No 250
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.36 E-value=6.6e-12 Score=126.21 Aligned_cols=180 Identities=18% Similarity=0.244 Sum_probs=111.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
..+.+++|+||+|||||++|++++..+ +.+++.++++++.... ..++.... .+.+|+|||+|.+...
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~ 105 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ 105 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhcc--cCCEEEEeChhhhcCC
Confidence 446789999999999999999999876 4678888887765421 22333222 3469999999988632
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC-CCCccC---ccccCCCcc--ceEEEcCCCCHHHHHHHHHHHhc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATN-RPDVMD---RAVLRPGRF--GKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn-~~~~ld---~a~~r~gRf--~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
. .+ .+.+..++..+. ..... +|++++ .+..++ +.+.+ |+ ...+.+|+|+.+++..+++.++.
T Consensus 106 ~-----~~-~~~L~~~l~~~~---~~~~~-iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 106 P-----EW-QEALFHLYNRVR---EAGGR-LLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred h-----HH-HHHHHHHHHHHH---HcCCe-EEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 1 00 122222333222 12223 444554 343332 56665 66 47899999999999999998876
Q ss_pred cCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 612 KKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 612 ~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+.++..+ ..+..++. .. +-+-++++++++.+...+..... .|+.+.+.+++
T Consensus 174 ~~~~~~~~~~l~~L~~--~~-~gn~r~L~~~l~~~~~~~~~~~~------------~i~~~~~~~~~ 225 (226)
T TIGR03420 174 RRGLQLPDEVADYLLR--HG-SRDMGSLMALLDALDRASLAAKR------------KITIPFVKEVL 225 (226)
T ss_pred HcCCCCCHHHHHHHHH--hc-cCCHHHHHHHHHHHHHHHHHhCC------------CCCHHHHHHHh
Confidence 6554322 22445552 11 33558888888877654444321 57777766655
No 251
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.1e-11 Score=120.77 Aligned_cols=152 Identities=21% Similarity=0.302 Sum_probs=93.8
Q ss_pred CCeEEEEeCcchhhcccCCCCchHH-HHHHHHHHHhhhCC--------CCCCcEEEEEec----CCCCccCccccCCCcc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVV-ERLLNQLLIELDGA--------DKRKGVFVIGAT----NRPDVMDRAVLRPGRF 588 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~--------~~~~~~~vI~at----n~~~~ld~a~~r~gRf 588 (702)
+.+|+||||||.++.+.+.++.+++ .-++..||-.++|. ..++++++|++. ..|..|-|.+- |||
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 5679999999999977654433443 56777888888873 356778888876 35788888884 599
Q ss_pred ceEEEcCCCCHHHHHHHHHH-----------HhccCCCC---CCCCHHHHhhhh-----cCCCCCHHHHHHHHHHHHHHH
Q 045279 589 GKLLYVPLPTPDERGLILEA-----------LARKKPID---DSVDLHTIAQSK-----FCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 589 ~~~i~~~~p~~~~r~~il~~-----------~~~~~~~~---~~~~~~~la~~~-----~~~~~sg~dl~~~~~~a~~~a 649 (702)
+-.++....+.++...||.- +++...+. .+..++.+|... -+++..++.|..++....
T Consensus 328 PIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL--- 404 (444)
T COG1220 328 PIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL--- 404 (444)
T ss_pred ceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH---
Confidence 99999999999998888732 23333332 122344444322 123445555555444322
Q ss_pred HHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 650 LEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
. .++-...+.......|+.+-+..-|..+
T Consensus 405 -e-diSFeA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 405 -E-DISFEAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred -H-HhCccCCcCCCCeEEEcHHHHHHHHHHH
Confidence 1 1111122333344567777777666554
No 252
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=1.7e-11 Score=135.95 Aligned_cols=189 Identities=20% Similarity=0.269 Sum_probs=119.8
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
..++|||++|+|||+|++++++.+ +..++.+++.+|...++..........|.+-.. .+++|+|||++.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 458999999999999999999976 568899999888766544322222223433222 56899999999997543
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC----CccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhcc
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP----DVMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~----~~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
. ..+.+-.++..+- ..... ||+|+|.+ ..+++.+.+ ||. .++.+..|+.+.|..||+.++..
T Consensus 394 ~------tqeeLF~l~N~l~---e~gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~ 461 (617)
T PRK14086 394 S------TQEEFFHTFNTLH---NANKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQ 461 (617)
T ss_pred H------HHHHHHHHHHHHH---hcCCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHh
Confidence 1 1222233333332 22222 44466653 357888887 884 66689999999999999999888
Q ss_pred CCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 613 KPIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 613 ~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
..+.... -++.|+.+. .=+-+.|..++......+.... ..|+.+.++.+|+.+
T Consensus 462 r~l~l~~eVi~yLa~r~---~rnvR~LegaL~rL~a~a~~~~------------~~itl~la~~vL~~~ 515 (617)
T PRK14086 462 EQLNAPPEVLEFIASRI---SRNIRELEGALIRVTAFASLNR------------QPVDLGLTEIVLRDL 515 (617)
T ss_pred cCCCCCHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHhhC------------CCCCHHHHHHHHHHh
Confidence 7665443 345666321 1144677776665543333221 145666666666544
No 253
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.35 E-value=1.8e-12 Score=135.54 Aligned_cols=169 Identities=21% Similarity=0.384 Sum_probs=107.0
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CC--eEEE
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-------VP--FYKI 189 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-------~~--~~~i 189 (702)
....|.+|+|++.+++.+.-.+.. ....|+||.|+||||||++|+++++.+. .+ +..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 345899999999999988743311 1236899999999999999999999983 21 1111
Q ss_pred ech---------hhhc---------------ccccccHH----------HHHHHHHHHHhhCCceEEechhhHhhhcchh
Q 045279 190 SAT---------EVVS---------------GVSGASEE----------NIRDLFSKAYRTAPSIVFIDEIDAIASKREN 235 (702)
Q Consensus 190 ~~~---------~l~~---------------~~~g~~~~----------~~~~~f~~a~~~~p~il~iDEid~l~~~~~~ 235 (702)
.+. .+.. ...|...- --.+.+..+ ...+||+|||+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl~~~--- 143 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLLEDH--- 143 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhCCHH---
Confidence 100 0000 01121000 001111122 2249999999887643
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCCCCH-HH
Q 045279 236 LQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGVPDE-NA 313 (702)
Q Consensus 236 ~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~p~~-~e 313 (702)
....|+..|++....+... +.....+.++++|+++|+.+ .++++++. ||...+.+++|.. ++
T Consensus 144 --------~q~~Lle~mee~~v~v~r~------G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e 207 (334)
T PRK13407 144 --------IVDLLLDVAQSGENVVERE------GLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVET 207 (334)
T ss_pred --------HHHHHHHHHHcCCeEEEEC------CeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHH
Confidence 3456777777543211111 11122455699999999865 68999999 9998999998877 99
Q ss_pred HHHHHHHhh
Q 045279 314 RVQILSVLT 322 (702)
Q Consensus 314 r~~Il~~~~ 322 (702)
+.+|+....
T Consensus 208 ~~~il~~~~ 216 (334)
T PRK13407 208 RVEVIRRRD 216 (334)
T ss_pred HHHHHHHhh
Confidence 999998643
No 254
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=3.1e-11 Score=136.83 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=132.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE---------EEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY---------KISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---------~i~~ 191 (702)
.+|++|+|++.+++.|...+.. -+.++.+|||||+|+|||++|+.+|+.+.+... .-+|
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 4899999999999999987732 123456999999999999999999998863210 0011
Q ss_pred hhhhcc-------ccc---ccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 192 TEVVSG-------VSG---ASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 192 ~~l~~~-------~~g---~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
..+..+ +.+ .....++.+...+.. +...|++|||+|.|... ..+.|+..|++.
T Consensus 82 ~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-----------a~naLLK~LEep-- 148 (614)
T PRK14971 82 VAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-----------AFNAFLKTLEEP-- 148 (614)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH-----------HHHHHHHHHhCC--
Confidence 111111 001 113456666655532 23459999999988532 345688888853
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~l 336 (702)
+..+++|.+|+....+-+.+++ |+ ..+.|..++.++....+...+....+.... .+..+
T Consensus 149 -----------------p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~L 208 (614)
T PRK14971 149 -----------------PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVI 208 (614)
T ss_pred -----------------CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4457788888888899999999 88 679999999999999998888777665443 35666
Q ss_pred HhhCCCCCHHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~~ 357 (702)
+..+.| +.+++.++++....
T Consensus 209 a~~s~g-dlr~al~~Lekl~~ 228 (614)
T PRK14971 209 AQKADG-GMRDALSIFDQVVS 228 (614)
T ss_pred HHHcCC-CHHHHHHHHHHHHH
Confidence 766644 67777666655443
No 255
>PRK05642 DNA replication initiation factor; Validated
Probab=99.33 E-value=9.6e-11 Score=117.85 Aligned_cols=159 Identities=18% Similarity=0.246 Sum_probs=103.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcch
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRE 234 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~ 234 (702)
.++++|+||+|||||+|++++++++ +..+++++..++.... ..+++.... ..+|+|||++.+.+...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~ 114 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD 114 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH
Confidence 4679999999999999999998764 5678888888775421 223333322 24999999997764322
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCC
Q 045279 235 NLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVP 309 (702)
Q Consensus 235 ~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p 309 (702)
+...|...++.... .+..++|+++..|. ...|.+++ ||. .++.+..|
T Consensus 115 ---------~~~~Lf~l~n~~~~-----------------~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~ 166 (234)
T PRK05642 115 ---------WEEALFHLFNRLRD-----------------SGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGL 166 (234)
T ss_pred ---------HHHHHHHHHHHHHh-----------------cCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCC
Confidence 12234444443321 24467777776554 34789999 884 56788999
Q ss_pred CHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHH
Q 045279 310 DENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 310 ~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a 355 (702)
+.+++..+++..+....+....+ +..+++...+ +.+.+..+++..
T Consensus 167 ~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 167 SDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 99999999996555544433333 4445555544 666666665544
No 256
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.33 E-value=2.9e-11 Score=134.00 Aligned_cols=168 Identities=22% Similarity=0.372 Sum_probs=110.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASK 232 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~ 232 (702)
.++++|||++|||||.|+++|++.+ +..++++++.++...+...........|..-.. ...+|+||||+.+..+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDK 392 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCC
Confidence 3569999999999999999999986 467899999888766543332222223433322 4579999999988754
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-CC---CCCccccCCCCcc--eEEEe
Q 045279 233 RENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR-PD---AVDPALRRPGRFD--REIVL 306 (702)
Q Consensus 233 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~-~~---~ld~al~r~~Rf~--~~i~~ 306 (702)
... ...|+..++.+.. .+.-+|| |+|. +. .+++.|++ ||. .++.+
T Consensus 393 e~t---------qeeLF~l~N~l~e-----------------~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I 443 (617)
T PRK14086 393 EST---------QEEFFHTFNTLHN-----------------ANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDV 443 (617)
T ss_pred HHH---------HHHHHHHHHHHHh-----------------cCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEc
Confidence 321 1223334443321 1223444 5544 33 57899999 884 56799
Q ss_pred CCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 307 GVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 307 ~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
..|+.+.|..||+..+....+....+ +..|+....+ +.+.|..++.+..
T Consensus 444 ~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 444 QPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 99999999999999888776655444 4445555443 5667766666543
No 257
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.33 E-value=4e-13 Score=128.85 Aligned_cols=130 Identities=25% Similarity=0.406 Sum_probs=74.3
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV----------------- 184 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----------------- 184 (702)
.|.+|+|++.+|..+.-.+. | ..|+||+||||||||++|+.+...+..
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~ 65 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAG 65 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT--
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcccccccc
Confidence 38899999999999985441 2 478999999999999999999987631
Q ss_pred -----------CeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 185 -----------PFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 185 -----------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
+|.....+.-.....|....-..+.+..|. ..|||+||+.. +.+.+++.|+..++
T Consensus 66 ~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~e-----------f~~~vld~Lr~ple 131 (206)
T PF01078_consen 66 LGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNE-----------FDRSVLDALRQPLE 131 (206)
T ss_dssp -S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTT-----------S-HHHHHHHHHHHH
T ss_pred CCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhh-----------cCHHHHHHHHHHHH
Confidence 111111111000011111000011222332 34999999943 44678889999998
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCC
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR 286 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~ 286 (702)
.....+... ......|.++++|+|+|+
T Consensus 132 ~g~v~i~R~------~~~~~~Pa~f~lv~a~NP 158 (206)
T PF01078_consen 132 DGEVTISRA------GGSVTYPARFLLVAAMNP 158 (206)
T ss_dssp HSBEEEEET------TEEEEEB--EEEEEEE-S
T ss_pred CCeEEEEEC------CceEEEecccEEEEEecc
Confidence 755433322 122335677999999998
No 258
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.2e-11 Score=138.43 Aligned_cols=189 Identities=21% Similarity=0.277 Sum_probs=126.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE---------Ee
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK---------IS 190 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---------i~ 190 (702)
+-+|++|+|++.+++.|...+.. -+.++.+||+||+|+|||++|+.+|+.+++.... -.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAE------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHh------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 34899999999999999877632 1234568999999999999999999998642210 00
Q ss_pred chhhhccc----------ccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 191 ATEVVSGV----------SGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 191 ~~~l~~~~----------~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
|..+..+. .......++.+.+.+.. ....|+||||+|.|... ..+.|+..+++.
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-----------a~naLLk~LEep- 147 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTA-----------AFNALLKTLEEP- 147 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH-----------HHHHHHHHHhcC-
Confidence 11111110 01122334555443322 23459999999988632 244577777752
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHH
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVK 335 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~ 335 (702)
+.++++|.+++..+.+.+.+++ |+ ..+.|..++..+...++...+......... .+..
T Consensus 148 ------------------p~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~ 206 (585)
T PRK14950 148 ------------------PPHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEA 206 (585)
T ss_pred ------------------CCCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3447777778888888888988 88 568999999999999998887766544333 3556
Q ss_pred HHhhCCCCCHHHHHHHHHH
Q 045279 336 IARSTPGFVGADLAALANK 354 (702)
Q Consensus 336 la~~t~g~~~~dl~~l~~~ 354 (702)
++..+.| +.+++.+.++.
T Consensus 207 La~~s~G-dlr~al~~Lek 224 (585)
T PRK14950 207 IARAATG-SMRDAENLLQQ 224 (585)
T ss_pred HHHHcCC-CHHHHHHHHHH
Confidence 6666655 67766666654
No 259
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.32 E-value=3.5e-11 Score=127.66 Aligned_cols=179 Identities=23% Similarity=0.266 Sum_probs=116.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEechhhh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV-----PFYKISATEVV 195 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~i~~~~l~ 195 (702)
.+|++++|.+.+++.+...+.. ....+++|+||||||||++++++++.+.. .++.+++++-.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~-------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKE-------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 4899999999999999877621 12236999999999999999999998732 34445443311
Q ss_pred cccccccHHHHHHHHHHHHh------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYR------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
....+...+..... ..+.+++|||+|.+.... ...|+..++..
T Consensus 81 ------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~-----------~~~L~~~le~~-------------- 129 (319)
T PRK00440 81 ------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA-----------QQALRRTMEMY-------------- 129 (319)
T ss_pred ------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH-----------HHHHHHHHhcC--------------
Confidence 01111222222211 234599999998885321 22355555432
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHH
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADL 348 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl 348 (702)
+.+..+|.++|.+..+.+++.+ |+ ..+.|++|+.++...++...+......-. ..+..++..+.| +.+.+
T Consensus 130 -----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~ 200 (319)
T PRK00440 130 -----SQNTRFILSCNYSSKIIDPIQS--RC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKA 200 (319)
T ss_pred -----CCCCeEEEEeCCccccchhHHH--Hh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 1225566677887788888888 88 46899999999999999988876655332 346667766554 44444
Q ss_pred HHHH
Q 045279 349 AALA 352 (702)
Q Consensus 349 ~~l~ 352 (702)
.+.+
T Consensus 201 ~~~l 204 (319)
T PRK00440 201 INAL 204 (319)
T ss_pred HHHH
Confidence 4443
No 260
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.31 E-value=9.2e-12 Score=130.30 Aligned_cols=160 Identities=21% Similarity=0.333 Sum_probs=104.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-------C--eEEEEe
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-------A--NFIHIK 495 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-------~--~~~~i~ 495 (702)
...|.++.|++.+++.+.-.... ....|+||.||||||||++|++++..+. . ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 45688999999988866532211 1225899999999999999999999872 2 111111
Q ss_pred c-ccc--------cc---------------cCcCch--HHHH---HHHHHH--HHhCCCeEEEEeCcchhhcccCCCCch
Q 045279 496 G-PEL--------LN---------------KYVGES--ELAV---RTLFSR--ARTCSPCILFFDEVDALTTKRGKEGGW 544 (702)
Q Consensus 496 ~-~~l--------~~---------------~~~g~~--~~~~---~~~f~~--a~~~~~~vl~iDEid~l~~~r~~~~~~ 544 (702)
+ .++ .. ..+|.- +..+ ...|.. ......++||+||++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------- 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------- 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC---------
Confidence 0 000 00 011110 0000 000110 011244799999999998
Q ss_pred HHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCCH-HHHHHHHHHHh
Q 045279 545 VVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPTP-DERGLILEALA 610 (702)
Q Consensus 545 ~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~~-~~r~~il~~~~ 610 (702)
..+++.|+..|+... ...++++|+++|..+ .+.++++. ||...+.++.|.. ++|.+|++...
T Consensus 142 --~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 --DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred --HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhh
Confidence 888889998886432 235688888888755 58888888 9999999998876 88999998743
No 261
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.31 E-value=5.8e-11 Score=136.91 Aligned_cols=147 Identities=22% Similarity=0.297 Sum_probs=107.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc------c-----cccccHHHHHHHHHHHHhhCCceEEechh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS------G-----VSGASEENIRDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~------~-----~~g~~~~~~~~~f~~a~~~~p~il~iDEi 226 (702)
.+++||-|.||+|||+|..++|+..|..++.||.++-.. . -.|+....-..++...+. +.++++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeehh
Confidence 467999999999999999999999999999999875322 1 123333332333333333 349999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC------CCCccccCCCCc
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD------AVDPALRRPGRF 300 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~------~ld~al~r~~Rf 300 (702)
+.. ...++.-|-.|+|.....+-+. -+.+...+.+++|.||-|+-. .++..+.. ||
T Consensus 1621 NLa-----------SQSVlEGLNacLDhR~eayIPE-----ld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF 1682 (4600)
T COG5271 1621 NLA-----------SQSVLEGLNACLDHRREAYIPE-----LDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF 1682 (4600)
T ss_pred hhh-----------HHHHHHHHHHHHhhcccccccc-----ccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh
Confidence 543 2456777888888765544433 233444567799999999854 68999998 99
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhcCc
Q 045279 301 DREIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 301 ~~~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
.++.+...+.++...|...++...
T Consensus 1683 -svV~~d~lt~dDi~~Ia~~~yp~v 1706 (4600)
T COG5271 1683 -SVVKMDGLTTDDITHIANKMYPQV 1706 (4600)
T ss_pred -heEEecccccchHHHHHHhhCCcc
Confidence 779999999999999998877654
No 262
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.31 E-value=3.5e-12 Score=134.27 Aligned_cols=203 Identities=22% Similarity=0.262 Sum_probs=132.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~ 196 (702)
...+..|||...++.++.+.+. .-.+...+|||.|++||||..+|++|-+.. ..||+.+||+.+..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~-----------~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIE-----------VVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHH-----------HHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 5578899999999999998883 345667889999999999999999997765 58999999999876
Q ss_pred c-------------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 197 G-------------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 197 ~-------------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
+ +.|+...+ .+-|+.|.++ .||+|||-.|+...| ..||..+.+-. +-..|+
T Consensus 288 sLlESELFGHeKGAFTGA~~~r-~GrFElAdGG---TLFLDEIGelPL~lQ-----------aKLLRvLQegE-ieRvG~ 351 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTR-RGRFELADGG---TLFLDEIGELPLALQ-----------AKLLRVLQEGE-IERVGG 351 (550)
T ss_pred HHHHHHHhcccccccccchhcc-CcceeecCCC---eEechhhccCCHHHH-----------HHHHHHHhhcc-eeecCC
Confidence 5 22332222 4456666444 999999977765433 34777766422 111222
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCC--CC-----CCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----ccC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRP--DA-----VDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----RVE 328 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~--~~-----ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~~~ 328 (702)
.. ..+-+|+||||||+- +. .-..|.- |+ .++.+..|...+|.. +...++.+. ...
T Consensus 352 ~r-------~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~ 421 (550)
T COG3604 352 DR-------TIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA 421 (550)
T ss_pred Cc-------eeEEEEEEEeccchhHHHHHHcCcchhhhhh--cc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc
Confidence 21 123459999999982 11 2222222 55 567888888877754 223333322 221
Q ss_pred ---Cc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 329 ---GS-FDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ---~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
-. ..+..+.+..---+.++|++++.+|+..+
T Consensus 422 ~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 422 ILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred ccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 11 12333444333337899999999998877
No 263
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.30 E-value=8.1e-11 Score=128.56 Aligned_cols=168 Identities=21% Similarity=0.336 Sum_probs=116.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHH--------hCCCeEEEEeCcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRAR--------TCSPCILFFDEVD 532 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------~~~~~vl~iDEid 532 (702)
++.+-+||+||||-||||||+.+|+++|+.+++|++|+-. +...++.-+..|. ...|.+|+|||||
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEID 397 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEID 397 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEeccc
Confidence 3445578999999999999999999999999999999843 3333433333332 2578999999999
Q ss_pred hhhcccCCCCchHHHHHHHHHHHhhhC-------CCCC------------CcEEEEEecCCCCccCccc--cCCCccceE
Q 045279 533 ALTTKRGKEGGWVVERLLNQLLIELDG-------ADKR------------KGVFVIGATNRPDVMDRAV--LRPGRFGKL 591 (702)
Q Consensus 533 ~l~~~r~~~~~~~~~~~~~~ll~~l~~-------~~~~------------~~~~vI~atn~~~~ld~a~--~r~gRf~~~ 591 (702)
.-. ..+++.++..+.. .... =.--|||.+|.... |++ +| -|-.+
T Consensus 398 Ga~-----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr--~~A~i 462 (877)
T KOG1969|consen 398 GAP-----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLR--PFAEI 462 (877)
T ss_pred CCc-----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcc--cceEE
Confidence 655 5555666555441 1110 01347888986543 444 35 58889
Q ss_pred EEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 592 LYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 592 i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
|+|++|...-..+=|+......++.. +...|. .+| .++..|||.+|+.....+.+...
T Consensus 463 i~f~~p~~s~Lv~RL~~IC~rE~mr~--d~~aL~--~L~-el~~~DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 463 IAFVPPSQSRLVERLNEICHRENMRA--DSKALN--ALC-ELTQNDIRSCINTLQFLASNVDR 520 (877)
T ss_pred EEecCCChhHHHHHHHHHHhhhcCCC--CHHHHH--HHH-HHhcchHHHHHHHHHHHHHhccc
Confidence 99999999887777777776666543 333333 333 45667999999999887776543
No 264
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.30 E-value=8.1e-12 Score=131.57 Aligned_cols=202 Identities=25% Similarity=0.361 Sum_probs=130.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEechhhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE----TGVPFYKISATEVV 195 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~----l~~~~~~i~~~~l~ 195 (702)
...+++|+|.+...+++.+.+.. -.+...+||++|++||||+.+|+.|... ...||+.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 33689999999999999988854 1344578999999999999999998533 46799999999886
Q ss_pred cc-------------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCC
Q 045279 196 SG-------------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPG 262 (702)
Q Consensus 196 ~~-------------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~ 262 (702)
.+ +.|. ...-.++|+.|.++ +||+|||+.|+...+. .|+..+++... ...|
T Consensus 143 en~~~~eLFG~~kGaftGa-~~~k~Glfe~A~GG---tLfLDEI~~LP~~~Q~-----------kLl~~le~g~~-~rvG 206 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGA-QGGKAGLFEQANGG---TLFLDEIHRLPPEGQE-----------KLLRVLEEGEY-RRVG 206 (403)
T ss_pred cCHHHHHHhccccceeecc-cCCcCchheecCCC---EEehhhhhhCCHhHHH-----------HHHHHHHcCce-EecC
Confidence 55 2342 23336788888665 9999999999876543 47777775321 1112
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCC--CCCCc--cccCCCCcceEEEeCCCCHHHHHH----HHHHhh----cCcccCCc
Q 045279 263 DQKSKSDASDSKPGYVLVIGATNRP--DAVDP--ALRRPGRFDREIVLGVPDENARVQ----ILSVLT----RNLRVEGS 330 (702)
Q Consensus 263 ~~~~~~~~~~~~~~~v~vI~atn~~--~~ld~--al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~----~~~~~~~~ 330 (702)
+ ....+.+|++|+|||.. +.+-. .+.+ |. ..+.+..|+..+|.. ++..++ ++......
T Consensus 207 ~-------~~~~~~dVRli~AT~~~l~~~~~~g~dl~~--rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~ 276 (403)
T COG1221 207 G-------SQPRPVDVRLICATTEDLEEAVLAGADLTR--RL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLS 276 (403)
T ss_pred C-------CCCcCCCceeeeccccCHHHHHHhhcchhh--hh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 2 22235569999999862 23333 4433 33 345666666666543 333333 33333222
Q ss_pred cc----HHHHHh-hCCCCCHHHHHHHHHHHHHHH
Q 045279 331 FD----LVKIAR-STPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 331 ~~----~~~la~-~t~g~~~~dl~~l~~~a~~~a 359 (702)
.. +..+.. ..+| +.++|++++..++..+
T Consensus 277 ~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~ 309 (403)
T COG1221 277 VDSPEALRALLAYDWPG-NIRELKNLVERAVAQA 309 (403)
T ss_pred CCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHh
Confidence 22 233333 3444 7789999998887655
No 265
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=3.9e-11 Score=120.86 Aligned_cols=180 Identities=11% Similarity=0.098 Sum_probs=106.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~ 539 (702)
..+++|+||+|||||++++++++.+. ..+..++..+.... ...+++... ...+|+|||++.+.++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~--~~dlliiDdi~~~~~~~- 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGME--QLSLVCIDNIECIAGDE- 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhh--hCCEEEEeChhhhcCCH-
Confidence 35799999999999999999998763 34455554432211 112222222 23699999999987432
Q ss_pred CCCchHHHHHHHHHHHhhhCCCCCCc-EEEEEecCCCCc---cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccC
Q 045279 540 KEGGWVVERLLNQLLIELDGADKRKG-VFVIGATNRPDV---MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 540 ~~~~~~~~~~~~~ll~~l~~~~~~~~-~~vI~atn~~~~---ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
.+ .+.+..++..+- ...+ .+|+.+++.|.. +.|.+.+ |+. .++.+.+|+.+++.++++..+...
T Consensus 114 ----~~-~~~lf~l~n~~~---e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 114 ----LW-EMAIFDLYNRIL---ESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred ----HH-HHHHHHHHHHHH---HcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 11 223333333321 1233 344444444444 6788887 885 788999999999999998877665
Q ss_pred CCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 614 PIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 614 ~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
++..+ .-++.++.. + .=+.+.+.+++......++.. ...||...+.+++.
T Consensus 184 ~~~l~~~v~~~L~~~--~-~~d~r~l~~~l~~l~~~~l~~------------~~~it~~~~k~~l~ 234 (235)
T PRK08084 184 GFELPEDVGRFLLKR--L-DREMRTLFMTLDQLDRASITA------------QRKLTIPFVKEILK 234 (235)
T ss_pred CCCCCHHHHHHHHHh--h-cCCHHHHHHHHHHHHHHHHhc------------CCCCCHHHHHHHHc
Confidence 55433 335666632 1 224456666665533222221 12588888887764
No 266
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.29 E-value=3e-11 Score=111.98 Aligned_cols=122 Identities=43% Similarity=0.684 Sum_probs=86.3
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHH---HHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELA---VRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~---~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
...+++++||||||||++++.++..+ +.+++.+++.+....+....... ....+..+....+.+|+|||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999998 88899998877655432221111 1122333445578999999999884
Q ss_pred cccCCCCchHHHHHHHHHHHhhhCCCC----CCcEEEEEecCCCC--ccCccccCCCccceEEEcCC
Q 045279 536 TKRGKEGGWVVERLLNQLLIELDGADK----RKGVFVIGATNRPD--VMDRAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 536 ~~r~~~~~~~~~~~~~~ll~~l~~~~~----~~~~~vI~atn~~~--~ld~a~~r~gRf~~~i~~~~ 596 (702)
......++..+..... ..++.+|++||... .+++.+.. ||+..+.+++
T Consensus 98 -----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 98 -----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred -----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 3444555555554432 46788889998876 67777777 9988887763
No 267
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.29 E-value=3e-12 Score=137.25 Aligned_cols=200 Identities=23% Similarity=0.332 Sum_probs=132.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG- 197 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~- 197 (702)
.+.+++|....++++.+.+.. -.....+|||+|++||||..+|++|-+.. +.||+.+||..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~k-----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAK-----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHH-----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 678999999999999987733 34566789999999999999999996655 579999999987654
Q ss_pred ------------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 045279 198 ------------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265 (702)
Q Consensus 198 ------------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~ 265 (702)
+.|.... -.+.|+.|.++ +||+|||..|+.. +...||..+++.. +...|+..
T Consensus 208 ~ESELFGhekGAFTGA~~~-r~G~fE~A~GG---TLfLDEI~~mpl~-----------~Q~kLLRvLqe~~-~~rvG~~~ 271 (464)
T COG2204 208 LESELFGHEKGAFTGAITR-RIGRFEQANGG---TLFLDEIGEMPLE-----------LQVKLLRVLQERE-FERVGGNK 271 (464)
T ss_pred HHHHhhcccccCcCCcccc-cCcceeEcCCc---eEEeeccccCCHH-----------HHHHHHHHHHcCe-eEecCCCc
Confidence 2233322 24577777655 9999999877744 3345777776432 22223222
Q ss_pred CCCCCCCCCCCeEEEEEecCCC--CCCC-----ccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCcc----cC-C
Q 045279 266 SKSDASDSKPGYVLVIGATNRP--DAVD-----PALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLR----VE-G 329 (702)
Q Consensus 266 ~~~~~~~~~~~~v~vI~atn~~--~~ld-----~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~----~~-~ 329 (702)
. .+-+|+||+|||.. +.+. +.|.- |+ .++.+..|+..+|.+ ++.+++++.. .. .
T Consensus 272 ~-------i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~ 341 (464)
T COG2204 272 P-------IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPK 341 (464)
T ss_pred c-------cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCC
Confidence 1 23459999999983 2333 33444 67 678999999888876 3344443321 11 1
Q ss_pred ccc---HHHH-HhhCCCCCHHHHHHHHHHHHHHH
Q 045279 330 SFD---LVKI-ARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 330 ~~~---~~~l-a~~t~g~~~~dl~~l~~~a~~~a 359 (702)
... +..+ ...++| +.++|.+++.+++..+
T Consensus 342 ~~s~~a~~~L~~y~WPG-NVREL~N~ver~~il~ 374 (464)
T COG2204 342 GFSPEALAALLAYDWPG-NVRELENVVERAVILS 374 (464)
T ss_pred CCCHHHHHHHHhCCCCh-HHHHHHHHHHHHHhcC
Confidence 111 2222 233455 6788888888877654
No 268
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=4.9e-11 Score=130.88 Aligned_cols=191 Identities=15% Similarity=0.229 Sum_probs=119.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHH---HHHHHHHHHHhCCCeEEEEeCcchh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESEL---AVRTLFSRARTCSPCILFFDEVDAL 534 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~---~~~~~f~~a~~~~~~vl~iDEid~l 534 (702)
..+++|||++|+|||+|++++++.+ +..++.+++.++...+...... .+..+.... ....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4568999999999999999999854 4688889988887665433221 222222222 35679999999988
Q ss_pred hcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-CC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHH
Q 045279 535 TTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-PD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEA 608 (702)
Q Consensus 535 ~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~ 608 (702)
.++. ...+.+-.++..+. ..... +|+|+|. |. .+++.+.+ ||. ..+.+.+|+.++|.+|++.
T Consensus 219 ~~k~------~~~e~lf~l~N~~~---~~~k~-iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 219 SYKE------KTNEIFFTIFNNFI---ENDKQ-LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred cCCH------HHHHHHHHHHHHHH---HcCCc-EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHH
Confidence 7432 11233333333332 22223 4556655 33 45777777 885 6778889999999999999
Q ss_pred HhccCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 609 LARKKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 609 ~~~~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.++..++. .+.-++.|+.. + +-+.+.|..+|..+...+..... ...|+.+.+.++++.+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~--~-~gd~R~L~gaL~~l~~~a~~~~~----------~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNY--Y-SDDVRKIKGSVSRLNFWSQQNPE----------EKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHc--c-CCCHHHHHHHHHHHHHHHhcccC----------CCCCCHHHHHHHHhhc
Confidence 98875531 22334555521 1 22446666666665543333211 1258888888888765
No 269
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.29 E-value=4.6e-11 Score=110.71 Aligned_cols=141 Identities=40% Similarity=0.635 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccHH
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASEE 204 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~~ 204 (702)
|.+.++..+...+ ......+++++||||||||++++.+++.+ +.+++.+++.............
T Consensus 2 ~~~~~~~~i~~~~-------------~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 68 (151)
T cd00009 2 GQEEAIEALREAL-------------ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELF 68 (151)
T ss_pred chHHHHHHHHHHH-------------hCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHh
Confidence 5667777776555 12245789999999999999999999998 8899999988765543222111
Q ss_pred H---HHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 205 N---IRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 205 ~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
. ....+.......+.+|+|||++.+... ....++..+....... ..+..+.+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-----------~~~~~~~~i~~~~~~~-------------~~~~~~~ii 124 (151)
T cd00009 69 GHFLVRLLFELAEKAKPGVLFIDEIDSLSRG-----------AQNALLRVLETLNDLR-------------IDRENVRVI 124 (151)
T ss_pred hhhhHhHHHHhhccCCCeEEEEeChhhhhHH-----------HHHHHHHHHHhcCcee-------------ccCCCeEEE
Confidence 1 112223333456789999999877321 1123444444322100 012348889
Q ss_pred EecCCCC--CCCccccCCCCcceEEEeC
Q 045279 282 GATNRPD--AVDPALRRPGRFDREIVLG 307 (702)
Q Consensus 282 ~atn~~~--~ld~al~r~~Rf~~~i~~~ 307 (702)
+++|... .+++.+.+ ||+.++.++
T Consensus 125 ~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 125 GATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred EecCccccCCcChhHHh--hhccEeecC
Confidence 9998876 77888888 997666665
No 270
>PRK08727 hypothetical protein; Validated
Probab=99.29 E-value=1.6e-10 Score=116.20 Aligned_cols=183 Identities=25% Similarity=0.317 Sum_probs=109.4
Q ss_pred CCCCCcccccCHH-HHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 118 KEGPRFQDLGGME-SVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 118 ~~~~~~~~i~G~~-~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
.+..+|+++++-. .....+..... + ...+.++|+||+|||||+|+++++..+ +....+++..+
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~------------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAA------------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHh------------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 3455888876543 33333332210 1 123569999999999999999997765 55666776655
Q ss_pred hhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
+. ..+...++... ...+|+|||++.+...... ...+...++....
T Consensus 80 ~~--------~~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~---------~~~lf~l~n~~~~---------------- 124 (233)
T PRK08727 80 AA--------GRLRDALEALE--GRSLVALDGLESIAGQRED---------EVALFDFHNRARA---------------- 124 (233)
T ss_pred hh--------hhHHHHHHHHh--cCCEEEEeCcccccCChHH---------HHHHHHHHHHHHH----------------
Confidence 32 22333444432 3459999999988754321 1123333333221
Q ss_pred CCCeEEEEEecC-CCCC---CCccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHH
Q 045279 274 KPGYVLVIGATN-RPDA---VDPALRRPGRF--DREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGA 346 (702)
Q Consensus 274 ~~~~v~vI~atn-~~~~---ld~al~r~~Rf--~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~ 346 (702)
.+ ..+|.|+| .|.. ++|.+++ || ..++.++.|+.+++.+|++..+....+..+. .+..+++.+.| ..+
T Consensus 125 -~~-~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r 199 (233)
T PRK08727 125 -AG-ITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELA 199 (233)
T ss_pred -cC-CeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHH
Confidence 11 33555554 4554 4799998 86 4678999999999999999876654444333 35566766553 333
Q ss_pred HHHHHHH
Q 045279 347 DLAALAN 353 (702)
Q Consensus 347 dl~~l~~ 353 (702)
.+.+++.
T Consensus 200 ~~l~~L~ 206 (233)
T PRK08727 200 GLVALLD 206 (233)
T ss_pred HHHHHHH
Confidence 3333344
No 271
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=3.9e-11 Score=120.65 Aligned_cols=177 Identities=16% Similarity=0.222 Sum_probs=109.5
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK 540 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~ 540 (702)
..++|+||+|||||+++.+++..+ +...+.++..++.. .+...+.... ...+|+|||++.+.....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChH-
Confidence 458999999999999999998765 45555665544322 2223444332 456999999998874331
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecC-CCCc---cCccccCCCcc--ceEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATN-RPDV---MDRAVLRPGRF--GKLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn-~~~~---ld~a~~r~gRf--~~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
. ...+..++..+. .. +.-||+|+| .|.. +++++.+ || ..++.+++|+.+++..|++.++...+
T Consensus 111 ----~-~~~lf~l~n~~~---~~-~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~ 179 (233)
T PRK08727 111 ----D-EVALFDFHNRAR---AA-GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRG 179 (233)
T ss_pred ----H-HHHHHHHHHHHH---Hc-CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcC
Confidence 1 223333444332 11 223555555 4543 4788887 86 46889999999999999998776655
Q ss_pred CCCC-CCHHHHhhhhcCCCCCHHHHHHH---HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 615 IDDS-VDLHTIAQSKFCENLSGADLAAM---MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 615 ~~~~-~~~~~la~~~~~~~~sg~dl~~~---~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+..+ ..++.++.. .++|++.+ ++.....+... ...||...+.+++..-
T Consensus 180 l~l~~e~~~~La~~------~~rd~r~~l~~L~~l~~~~~~~------------~~~it~~~~~~~l~~~ 231 (233)
T PRK08727 180 LALDEAAIDWLLTH------GERELAGLVALLDRLDRESLAA------------KRRVTVPFLRRVLEEG 231 (233)
T ss_pred CCCCHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHh------------CCCCCHHHHHHHHhhc
Confidence 4332 335566632 33666665 44333222221 1268888888887653
No 272
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.28 E-value=2e-10 Score=115.98 Aligned_cols=111 Identities=22% Similarity=0.233 Sum_probs=75.4
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-----------
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR----------- 286 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~----------- 286 (702)
|.||||||+|.|-- ..+.-|...|+.-. . -++|.|||+
T Consensus 292 pGVLFIDEvHmLDI-----------E~FsFlnrAlEse~-----------------a---PIii~AtNRG~~kiRGTd~~ 340 (450)
T COG1224 292 PGVLFIDEVHMLDI-----------ECFSFLNRALESEL-----------------A---PIIILATNRGMTKIRGTDIE 340 (450)
T ss_pred cceEEEechhhhhH-----------HHHHHHHHHhhccc-----------------C---cEEEEEcCCceeeecccCCc
Confidence 67999999987742 22333444454311 1 366777776
Q ss_pred -CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 287 -PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 287 -~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
|..++..|+. |+ -+|...+++.++..+|++..++...+..+.+ +..++.....-+.+...+|+.-|...|.+|
T Consensus 341 sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r 415 (450)
T COG1224 341 SPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR 415 (450)
T ss_pred CCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh
Confidence 4578888988 98 7889999999999999999888777655443 566776666666666666666555555443
No 273
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.28 E-value=1.3e-11 Score=117.28 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=122.2
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~ 498 (702)
.+..+.+|+|.++....+.-.. +-|. -.++++.|||||||||.+.++|+++ +..++++++|+
T Consensus 22 rP~~l~dIVGNe~tv~rl~via-----------~~gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASd 88 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIA-----------KEGN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASD 88 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHH-----------HcCC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcc
Confidence 3456789999999877765422 2222 2478999999999999999999987 34678888887
Q ss_pred ccccCcCchHHHHHHHHHHHH-hC---CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 499 LLNKYVGESELAVRTLFSRAR-TC---SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~-~~---~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
-.+ + ...++.-..|++-+ .. ...|+++||+|++. ...++.|-+.|+-+.+..+ +..++|.
T Consensus 89 eRG--I-DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtMEiyS~ttR--FalaCN~ 152 (333)
T KOG0991|consen 89 ERG--I-DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTMEIYSNTTR--FALACNQ 152 (333)
T ss_pred ccc--c-HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHHHHHcccch--hhhhhcc
Confidence 433 1 23334445565543 22 33599999999998 6677777778876655544 5557898
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
.+.|-+.+-+ ||. ++.|...+..+...=+....+..++.. +..++.+. ++ +.+|+|+.++...
T Consensus 153 s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii---ft---a~GDMRQalNnLQ 216 (333)
T KOG0991|consen 153 SEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII---FT---AQGDMRQALNNLQ 216 (333)
T ss_pred hhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh---hh---ccchHHHHHHHHH
Confidence 8887777766 885 555655555544333333444444433 34456555 12 4579999988655
No 274
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.27 E-value=1.9e-10 Score=110.30 Aligned_cols=195 Identities=21% Similarity=0.308 Sum_probs=136.7
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
....+.+.+|+|.+.+++.+.+.....+ .-.+.+||||+|..|||||++++++-+++ +..+++|+..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 3456789999999999999988775433 23467999999999999999999998776 46789998888
Q ss_pred hhcccccccHHHHHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+. .+..+++..+.. .+-|||+|++-. +. ++ .....|...|++. ..
T Consensus 124 l~---------~Lp~l~~~Lr~~~~kFIlFcDDLSF-----e~--gd---~~yK~LKs~LeG~---------------ve 169 (287)
T COG2607 124 LA---------TLPDLVELLRARPEKFILFCDDLSF-----EE--GD---DAYKALKSALEGG---------------VE 169 (287)
T ss_pred Hh---------hHHHHHHHHhcCCceEEEEecCCCC-----CC--Cc---hHHHHHHHHhcCC---------------cc
Confidence 73 345566665433 345999999821 11 11 1233455556632 23
Q ss_pred CCCCeEEEEEecCCCCCCC--------------c------cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 273 SKPGYVLVIGATNRPDAVD--------------P------ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld--------------~------al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
..|.+|+|-||+|+...++ | .+.=++||.-.+.|.+++.++-..|+..+++...+....
T Consensus 170 ~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e 249 (287)
T COG2607 170 GRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDE 249 (287)
T ss_pred cCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 3578899999999854332 1 122234999999999999999999999999988876643
Q ss_pred cHH----HHHhhCCCCCHHHHHHHHHH
Q 045279 332 DLV----KIARSTPGFVGADLAALANK 354 (702)
Q Consensus 332 ~~~----~la~~t~g~~~~dl~~l~~~ 354 (702)
.+. ..|....|-+||-..++++.
T Consensus 250 ~l~~eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 250 ELHAEALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred HHHHHHHHHHHhcCCCccHhHHHHHHH
Confidence 222 34445566677765555543
No 275
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.27 E-value=1.2e-11 Score=129.47 Aligned_cols=169 Identities=24% Similarity=0.397 Sum_probs=108.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CCeEE--
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-------VPFYK-- 188 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-------~~~~~-- 188 (702)
...+.|.+|+|++++|..|.-.+..| ...++||.||+|||||++|+++++.+. .+|..
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCC
Confidence 34558999999999999988655332 236899999999999999999988763 12210
Q ss_pred ----Eechhhhcc-------------------cccccHHHH------------------HHHHHHHHhhCCceEEechhh
Q 045279 189 ----ISATEVVSG-------------------VSGASEENI------------------RDLFSKAYRTAPSIVFIDEID 227 (702)
Q Consensus 189 ----i~~~~l~~~-------------------~~g~~~~~~------------------~~~f~~a~~~~p~il~iDEid 227 (702)
..+..+... -.|.++.++ .+++..| ...+||+|||+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A---~~GiL~lDEIn 154 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKA---NRGILYVDEVN 154 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeec---CCCEEEecChH
Confidence 000000000 011122211 1112222 23599999999
Q ss_pred HhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEe
Q 045279 228 AIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVL 306 (702)
Q Consensus 228 ~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~ 306 (702)
.+.+.. ...|+..|++....+... +.+...+.++++|+|.|+.+ .+.+++.. ||...+.+
T Consensus 155 rL~~~~-----------Q~~LLeam~e~~~~ier~------G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l 215 (350)
T CHL00081 155 LLDDHL-----------VDILLDSAASGWNTVERE------GISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEI 215 (350)
T ss_pred hCCHHH-----------HHHHHHHHHhCCeEEeeC------CeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeec
Confidence 887543 334777776532212111 11122355699999999866 69999999 99999999
Q ss_pred CCCC-HHHHHHHHHHh
Q 045279 307 GVPD-ENARVQILSVL 321 (702)
Q Consensus 307 ~~p~-~~er~~Il~~~ 321 (702)
..|+ .+.+.+|++..
T Consensus 216 ~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 216 RTVKDPELRVKIVEQR 231 (350)
T ss_pred CCCCChHHHHHHHHhh
Confidence 9998 59999999865
No 276
>PHA02244 ATPase-like protein
Probab=99.27 E-value=1.3e-10 Score=120.95 Aligned_cols=125 Identities=24% Similarity=0.296 Sum_probs=86.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc----cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP----ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~----~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
.+.+++|+||||||||++|+++|..++.+|+.++.. ++.+ ++.....-...-|-+|.. .+++|||||++.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~-- 193 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASI-- 193 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCC--
Confidence 355789999999999999999999999999998742 1111 111111111112333333 56899999999988
Q ss_pred cCCCCchHHHHHHHHHHHhhhC---------CCCCCcEEEEEecCCC-----------CccCccccCCCccceEEEcCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDG---------ADKRKGVFVIGATNRP-----------DVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~vI~atn~~-----------~~ld~a~~r~gRf~~~i~~~~p 597 (702)
..++..|...++. ...+.++.+|+|+|.+ ..++++++. ||- .|+|+.|
T Consensus 194 ---------p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp 261 (383)
T PHA02244 194 ---------PEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYD 261 (383)
T ss_pred ---------HHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCC
Confidence 5566666666542 1234678999999973 467899998 994 7999999
Q ss_pred CHHHH
Q 045279 598 TPDER 602 (702)
Q Consensus 598 ~~~~r 602 (702)
+.-|.
T Consensus 262 ~~~E~ 266 (383)
T PHA02244 262 EKIEH 266 (383)
T ss_pred cHHHH
Confidence 85444
No 277
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=2.2e-10 Score=121.40 Aligned_cols=187 Identities=21% Similarity=0.206 Sum_probs=121.0
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eEEE----e
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------FYKI----S 190 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------~~~i----~ 190 (702)
.+++|+|++.+++.+...+.. -+-++.+||+||+|+|||++|+.+|+.+.+. .... .
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~ 88 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPA 88 (351)
T ss_pred chhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCC
Confidence 899999999999999987722 2345679999999999999999999998541 1000 1
Q ss_pred c---hhhhcc-------------cc-c-----ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHH
Q 045279 191 A---TEVVSG-------------VS-G-----ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRI 244 (702)
Q Consensus 191 ~---~~l~~~-------------~~-g-----~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~ 244 (702)
| ..+..+ .. + -....++.+.+... .+...|++|||+|.|....
T Consensus 89 c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~a----------- 157 (351)
T PRK09112 89 SPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNA----------- 157 (351)
T ss_pred CHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHH-----------
Confidence 1 111000 00 0 01123333332222 3345699999999886432
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 245 VTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 245 ~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
.+.|+..+++. +.+.++|..|+.++.+.|.+++ |+ ..+.|++|+.++..+++......
T Consensus 158 anaLLk~LEEp-------------------p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~ 215 (351)
T PRK09112 158 ANAILKTLEEP-------------------PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSS 215 (351)
T ss_pred HHHHHHHHhcC-------------------CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcc
Confidence 34588888762 3446677777888889999999 98 68999999999999999874322
Q ss_pred cccCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 325 LRVEGSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 325 ~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..+ ....+..+++.+.| +++....++...
T Consensus 216 ~~~-~~~~~~~i~~~s~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 216 QGS-DGEITEALLQRSKG-SVRKALLLLNYG 244 (351)
T ss_pred cCC-CHHHHHHHHHHcCC-CHHHHHHHHhcC
Confidence 221 12224455655555 555555555443
No 278
>PRK05642 DNA replication initiation factor; Validated
Probab=99.26 E-value=8.2e-11 Score=118.37 Aligned_cols=180 Identities=15% Similarity=0.209 Sum_probs=111.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRG 539 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~ 539 (702)
..+++|+||+|||||+|++++++++ +..++.++..++...+ ..+.+... ...+|+||+++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh-
Confidence 4678999999999999999999764 5677888877765421 12333333 23699999999886432
Q ss_pred CCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 540 KEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 540 ~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
.....|...++........+||+++..|. ...|.+.+ ||. .++.+..|+.+++..+++..+...+
T Consensus 114 --------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 --------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred --------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 11222333333333334556665555453 34677877 884 6677899999999999997666544
Q ss_pred CCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 615 IDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 615 ~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
+.- +.-++.++.+ . .-+.+.+..+++.....++... ..||..-+.++|.
T Consensus 184 ~~l~~ev~~~L~~~--~-~~d~r~l~~~l~~l~~~~l~~~------------~~it~~~~~~~L~ 233 (234)
T PRK05642 184 LHLTDEVGHFILTR--G-TRSMSALFDLLERLDQASLQAQ------------RKLTIPFLKETLG 233 (234)
T ss_pred CCCCHHHHHHHHHh--c-CCCHHHHHHHHHHHHHHHHHcC------------CcCCHHHHHHHhc
Confidence 432 3334566632 1 2355666666665543333321 2578777777764
No 279
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.1e-10 Score=120.31 Aligned_cols=188 Identities=26% Similarity=0.345 Sum_probs=126.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcCch-HHHHHHHHHHHH----hCCCeEEEEeCcchhhc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGES-ELAVRTLFSRAR----TCSPCILFFDEVDALTT 536 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g~~-~~~~~~~f~~a~----~~~~~vl~iDEid~l~~ 536 (702)
..++||.||+|+|||.||+.||+.++.||...+|..+.. .|+|+. +.-+..++..|. +...+|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 367999999999999999999999999999999998874 489874 445666666542 34668999999999984
Q ss_pred ccCCCCc--h-HHHHHHHHHHHhhhCCC-------------------CCCcEEEEEecCC--------------------
Q 045279 537 KRGKEGG--W-VVERLLNQLLIELDGAD-------------------KRKGVFVIGATNR-------------------- 574 (702)
Q Consensus 537 ~r~~~~~--~-~~~~~~~~ll~~l~~~~-------------------~~~~~~vI~atn~-------------------- 574 (702)
.-..-+. + ...-+++.||..++|.. ...++++|+..-.
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~ 385 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGA 385 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCC
Confidence 3322111 1 22678889999998821 1223444433210
Q ss_pred C------------------------------------CccCccccCCCccceEEEcCCCCHHHHHHHHHH----H-----
Q 045279 575 P------------------------------------DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEA----L----- 609 (702)
Q Consensus 575 ~------------------------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~----~----- 609 (702)
+ .-+-|.|. |||+.++.|...+.+.+.+|+.- +
T Consensus 386 ~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfV--GRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk 463 (564)
T KOG0745|consen 386 PSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFV--GRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYK 463 (564)
T ss_pred CCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHh--cccceEeeccccCHHHHHHHHhcchhhHHHHHH
Confidence 0 02233443 59999999999999999888732 1
Q ss_pred --hccCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 610 --ARKKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALED 652 (702)
Q Consensus 610 --~~~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~ 652 (702)
+.-..+. .+..++.+|+..+..+-.++-||.++..+.+.|.-+
T Consensus 464 ~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 464 KLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhccc
Confidence 1111111 223466777766666666688888888777665544
No 280
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.25 E-value=6.8e-12 Score=115.87 Aligned_cols=127 Identities=27% Similarity=0.454 Sum_probs=75.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--cccccHHH------HHHHHHHHHhhCCceEEechhhHhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--VSGASEEN------IRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--~~g~~~~~------~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
+|||+||||||||++++.+|+.++.+++.++++..... ..|..... ....+-.+. ..+.+++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-RKGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-HEEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc-cceeEEEECCcccCC-
Confidence 59999999999999999999999999999888764322 11111000 000001111 145699999997654
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC----CCCccccCCCCc
Q 045279 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD----AVDPALRRPGRF 300 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf 300 (702)
..++..|+..+++....+..+...........-+.++++|+|+|+.. .+++++++ ||
T Consensus 79 ----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 34566677888765543322222211110001122499999999988 89999999 87
No 281
>PHA02244 ATPase-like protein
Probab=99.25 E-value=1e-10 Score=121.72 Aligned_cols=137 Identities=23% Similarity=0.305 Sum_probs=85.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc---cccccc-HHHHHHHHHHHHhhCCceEEechhhHhhhc
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS---GVSGAS-EENIRDLFSKAYRTAPSIVFIDEIDAIASK 232 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~---~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~~ 232 (702)
.+.+|||+||||||||++|+++|..++.+|+.++...-.. ++.... ...-..++ .+. ..+.+|+|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl-~A~-~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFY-EAF-KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHH-HHh-hcCCEEEEeCcCcCCHH
Confidence 3567999999999999999999999999999987431111 111111 01111222 332 23469999999877643
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC-----------CCCCccccCCCCcc
Q 045279 233 RENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP-----------DAVDPALRRPGRFD 301 (702)
Q Consensus 233 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~-----------~~ld~al~r~~Rf~ 301 (702)
. ...|...++.. .+...+ .....+.++.+|+|+|+. ..+++++++ ||
T Consensus 196 v-----------q~~L~~lLd~r--~l~l~g------~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF- 253 (383)
T PHA02244 196 A-----------LIIINSAIANK--FFDFAD------ERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF- 253 (383)
T ss_pred H-----------HHHHHHHhccC--eEEecC------cEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-
Confidence 2 23355555432 111111 111123568999999983 468999999 99
Q ss_pred eEEEeCCCCHHHHHHHH
Q 045279 302 REIVLGVPDENARVQIL 318 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il 318 (702)
..|.+++|+.-+ ..|.
T Consensus 254 v~I~~dyp~~~E-~~i~ 269 (383)
T PHA02244 254 APIEFDYDEKIE-HLIS 269 (383)
T ss_pred EEeeCCCCcHHH-HHHh
Confidence 679999998433 3444
No 282
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.3e-10 Score=120.48 Aligned_cols=200 Identities=23% Similarity=0.331 Sum_probs=128.5
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEechhhhcc
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-----FYKISATEVVSG 197 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-----~~~i~~~~l~~~ 197 (702)
=+.+.+.+..++++...+...+. | ..+.+++++||||||||++++.+++++... +++|||..+.+.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--------~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~ 86 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--------G-ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP 86 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--------C-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence 34599999999999977644332 2 234469999999999999999999998543 899999875443
Q ss_pred c---------------ccccHHHH-HHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 198 V---------------SGASEENI-RDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 198 ~---------------~g~~~~~~-~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
+ .|.....+ ..+++.... ....|+++||+|.|....+ .++-.|+......
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~----- 153 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN----- 153 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc-----
Confidence 1 22222222 223333222 3456899999999986643 2222333322211
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcccCC--ccc-H
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLRVEG--SFD-L 333 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~~~~--~~~-~ 333 (702)
..+|.+|+.+|..+ .+||.+.+ +|. ..|.|++++.+|...|+....+...... ..+ +
T Consensus 154 --------------~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl 217 (366)
T COG1474 154 --------------KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVL 217 (366)
T ss_pred --------------ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHH
Confidence 23489999998854 78999988 553 4589999999999999987766432221 112 2
Q ss_pred H---HHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 045279 334 V---KIARSTPGFVGADLAALANKAGNLAMK 361 (702)
Q Consensus 334 ~---~la~~t~g~~~~dl~~l~~~a~~~a~~ 361 (702)
. .++....| ..|-...+++.|+..|.+
T Consensus 218 ~lia~~~a~~~G-DAR~aidilr~A~eiAe~ 247 (366)
T COG1474 218 KLIAALVAAESG-DARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHHHHHHHcCc-cHHHHHHHHHHHHHHHHh
Confidence 2 22333333 455555667777666644
No 283
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=9.4e-11 Score=132.30 Aligned_cols=173 Identities=27% Similarity=0.338 Sum_probs=132.3
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
..+++.++|-+.-..++.+.+.+ +...+-+|+|+||+|||.++..+|... +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 34677888888777766665443 334456999999999999999999865 5677888
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
+.+.+. .+|.|+.|..++.+.+.+...++.||||||+|.+.+.-+..++ .-++-|-|--.|. ...+-+|+||
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~--a~DAaNiLKPaLA----RGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG--AMDAANLLKPALA----RGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc--ccchhhhhHHHHh----cCCeEEEEec
Confidence 887776 4699999999999999999888999999999999976554332 2344444444442 4556788888
Q ss_pred CCC-----CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC
Q 045279 573 NRP-----DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV 619 (702)
Q Consensus 573 n~~-----~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~ 619 (702)
+.- -.-|+|+-| ||. .|.+.-|+.++-..|++.+-.++..+..+
T Consensus 307 T~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V 355 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGV 355 (786)
T ss_pred cHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCc
Confidence 653 257899999 995 88899999999999999887766555443
No 284
>PRK06620 hypothetical protein; Validated
Probab=99.24 E-value=1.7e-10 Score=114.14 Aligned_cols=175 Identities=15% Similarity=0.180 Sum_probs=106.1
Q ss_pred CCCCCCcccccCHH---HHHHHHHHHhhhhccCCCcccccCCCC-CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 117 GKEGPRFQDLGGME---SVLEELKMEVIVPLYHPQLPQWLGVRP-MAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 117 ~~~~~~~~~i~G~~---~~k~~l~~~v~~~~~~~~~~~~~~~~~-~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
..+..+|++++--+ .+...+.+.... .+..+ .+.++||||||||||+|++++++..+..+ +...
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~----------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~ 76 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCG----------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDI 76 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHc----------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cchh
Confidence 35566899975433 344444443311 12223 36799999999999999999999876533 2211
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
... ...+ ....+|+|||||.+. . . .|...++....
T Consensus 77 ~~~-----------~~~~-----~~~d~lliDdi~~~~-------~----~---~lf~l~N~~~e--------------- 111 (214)
T PRK06620 77 FFN-----------EEIL-----EKYNAFIIEDIENWQ-------E----P---ALLHIFNIINE--------------- 111 (214)
T ss_pred hhc-----------hhHH-----hcCCEEEEeccccch-------H----H---HHHHHHHHHHh---------------
Confidence 110 1111 133699999998431 0 1 23333322211
Q ss_pred CCCCeEEEEEecCCCC--CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHH
Q 045279 273 SKPGYVLVIGATNRPD--AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGAD 347 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~--~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~d 347 (702)
.|..++|+++..|. .+ |++++ |+. .++.+..|+.+++..+++..+....+.-..+ +..++....+ +.+.
T Consensus 112 --~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~ 185 (214)
T PRK06620 112 --KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSK 185 (214)
T ss_pred --cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHH
Confidence 34467777776655 36 88998 884 2689999999999999988877555444333 4556665544 5566
Q ss_pred HHHHHHH
Q 045279 348 LAALANK 354 (702)
Q Consensus 348 l~~l~~~ 354 (702)
+..++..
T Consensus 186 l~~~l~~ 192 (214)
T PRK06620 186 IIEILEN 192 (214)
T ss_pred HHHHHHH
Confidence 6665554
No 285
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.23 E-value=5.5e-11 Score=115.84 Aligned_cols=128 Identities=20% Similarity=0.261 Sum_probs=94.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe------------------------EEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN------------------------FIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+|||++|+.++..+... +..+.... . .-+...++.+..
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 455679999999999999999999987431 22221110 0 012345666666
Q ss_pred HHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+.. ..+.|++|||+|.+. ...++.||..|+.. ...+++|++||.+..+.+++.+ |+ ..+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~-----------~~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~-~~~ 150 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN-----------EAAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RC-QVL 150 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hc-EEe
Confidence 6543 346799999999998 67788999999864 3456666677778899999988 88 489
Q ss_pred EcCCCCHHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEAL 609 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~ 609 (702)
.|++|+.++...++...
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999988888776
No 286
>PRK04132 replication factor C small subunit; Provisional
Probab=99.22 E-value=1e-10 Score=134.77 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=118.7
Q ss_pred ceEEEc--CCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhC------CCeEEEEeCc
Q 045279 465 GFLLYG--PPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTC------SPCILFFDEV 531 (702)
Q Consensus 465 ~~ll~G--p~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~------~~~vl~iDEi 531 (702)
+-+..| |++.||||+|+++|+++ +.+++++++++..+ -..+|.+...+... ++.|+||||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 346678 99999999999999997 56899999998532 23566666544321 2479999999
Q ss_pred chhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 532 DALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 532 d~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
|.+. ...++.|+..|+... .++.+|++||.++.+-+++.+ || ..+.|++|+.++....++..+.
T Consensus 640 D~Lt-----------~~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 640 DALT-----------QDAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred ccCC-----------HHHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 9998 788999999998643 567888899999999999988 98 5899999999999888888877
Q ss_pred cCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 612 KKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 612 ~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
+.++. .+..+..++ ..+++|+|.+++....
T Consensus 704 ~Egi~i~~e~L~~Ia------~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 704 NEGLELTEEGLQAIL------YIAEGDMRRAINILQA 734 (846)
T ss_pred hcCCCCCHHHHHHHH------HHcCCCHHHHHHHHHH
Confidence 65543 233455555 4466788877765543
No 287
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=2.9e-10 Score=119.99 Aligned_cols=172 Identities=15% Similarity=0.229 Sum_probs=116.7
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--------eEEEechh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------FYKISATE 193 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------~~~i~~~~ 193 (702)
+|++|+|++.+++.+...+.. -+.++.+||+||+|+|||++|+.+|+.+.+. ++.+...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~- 68 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI- 68 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-
Confidence 699999999999999887721 2345678999999999999999999987432 2222221
Q ss_pred hhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 194 VVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
.+ ..-.-..++.+.+.+. .+...|++||++|.|... ..+.|+..+++
T Consensus 69 --~~-~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-----------a~naLLK~LEe--------------- 119 (313)
T PRK05564 69 --NK-KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-----------AQNAFLKTIEE--------------- 119 (313)
T ss_pred --cC-CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-----------HHHHHHHHhcC---------------
Confidence 01 0112234555555332 334569999999888643 24468888885
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCH
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVG 345 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~ 345 (702)
.|.++++|.+|+.++.+.|.+++ |+ ..+.|..|+.++....+....... ....+..++..+.|-.+
T Consensus 120 ----pp~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 120 ----PPKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYNDI---KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred ----CCCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcCC---CHHHHHHHHHHcCCCHH
Confidence 24457777777888999999999 98 689999999999888876554321 12234455655555433
No 288
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.21 E-value=8.5e-10 Score=105.86 Aligned_cols=198 Identities=21% Similarity=0.276 Sum_probs=139.4
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
....+.+.+.+|.|++.+++.+.+.-...+ .-.|..++||+|..|||||+++|++-++. +..+++|+.
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~---------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFA---------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHH---------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 344456789999999999998865443332 22456789999999999999999998876 667899988
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC--CCCCcEEEEEecC
Q 045279 497 PELLNKYVGESELAVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA--DKRKGVFVIGATN 573 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~--~~~~~~~vI~atn 573 (702)
.++.. +-.+++..+..+ +-|||+|++..=.+ +.....|-..|+|- ....||+|.+|+|
T Consensus 122 ~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~g----------d~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 EDLAT---------LPDLVELLRARPEKFILFCDDLSFEEG----------DDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred HHHhh---------HHHHHHHHhcCCceEEEEecCCCCCCC----------chHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 88754 345666666533 56888898653221 34455566677874 4567999999999
Q ss_pred CCCccCcccc---------C-----------CCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHH--HHhhhhcC
Q 045279 574 RPDVMDRAVL---------R-----------PGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLH--TIAQSKFC 630 (702)
Q Consensus 574 ~~~~ld~a~~---------r-----------~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~--~la~~~~~ 630 (702)
+.+.|..-+. . ..||...+.|++++.++...|+..+++..+++.+. .++ .+......
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 8765542221 1 12999999999999999999999999998877532 232 22222333
Q ss_pred CCCCHHHHHHHHHHH
Q 045279 631 ENLSGADLAAMMNEA 645 (702)
Q Consensus 631 ~~~sg~dl~~~~~~a 645 (702)
.+-||+-..+.++..
T Consensus 263 g~RSGR~A~QF~~~~ 277 (287)
T COG2607 263 GGRSGRVAWQFIRDL 277 (287)
T ss_pred CCCccHhHHHHHHHH
Confidence 466777777666643
No 289
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=1.9e-10 Score=121.80 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=111.0
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC-------eEEEE-e-
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------NFIHI-K- 495 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------~~~~i-~- 495 (702)
+..++.+.|.+.++..+...+.. -+.+..+||+||+|+|||++|+.+|+.+.+ +.... .
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 45788899999998888775532 144567999999999999999999998744 11000 0
Q ss_pred --c-----------cccc---ccC--------cCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHH
Q 045279 496 --G-----------PELL---NKY--------VGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVE 547 (702)
Q Consensus 496 --~-----------~~l~---~~~--------~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~ 547 (702)
+ +++. ..+ ..-+...+|.+..... .....|++|||+|.+. .
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~-----------~ 155 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN-----------R 155 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC-----------H
Confidence 0 0111 000 0011234455443332 3456799999999998 7
Q ss_pred HHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 548 RLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 548 ~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
...|.||..|+... .++++|+.|+.++.+.|.+.+ |+ ..+.|++|+.++...++....
T Consensus 156 ~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 156 NAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred HHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhh
Confidence 88899999998743 455666667888888899877 99 599999999999999998743
No 290
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.20 E-value=7.1e-11 Score=112.28 Aligned_cols=174 Identities=20% Similarity=0.282 Sum_probs=113.3
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-C----CCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-G----VPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~----~~~~~i~~~~l 194 (702)
+..++||+|.++.++++..... -....|++|.|||||||||-+.++|+++ | --+.++|+++-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~-------------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAK-------------EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHH-------------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 4479999999999999986552 1233579999999999999999999987 3 23566777663
Q ss_pred hcccccccHHHHHHHHHHHHhhC----CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTA----PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~----p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
.. ..-...++ ..|.+-+-.- -.|+++||+|+|....+ +.|.+.|+-+..
T Consensus 90 RG--IDvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~gAQ-----------QAlRRtMEiyS~------------- 142 (333)
T KOG0991|consen 90 RG--IDVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTAGAQ-----------QALRRTMEIYSN------------- 142 (333)
T ss_pred cc--cHHHHHHH-HHHHHhhccCCCCceeEEEeeccchhhhHHH-----------HHHHHHHHHHcc-------------
Confidence 21 11112222 3444433222 24999999999975432 235555554322
Q ss_pred CCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCC
Q 045279 271 SDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPG 342 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g 342 (702)
..++..+||..+.+-..+.+ |+ ..+.+...+..+.+.-+....+...+.... .+..+.-...|
T Consensus 143 ------ttRFalaCN~s~KIiEPIQS--RC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G 206 (333)
T KOG0991|consen 143 ------TTRFALACNQSEKIIEPIQS--RC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG 206 (333)
T ss_pred ------cchhhhhhcchhhhhhhHHh--hh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc
Confidence 25788899999998888988 87 567777777777666665555554443322 34444443343
No 291
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.20 E-value=1.4e-10 Score=123.80 Aligned_cols=158 Identities=26% Similarity=0.327 Sum_probs=96.7
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eEEEe----c
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP-------FYKIS----A 191 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~-------~~~i~----~ 191 (702)
++++.+.+...+.+...+ ..+.+++|+||||||||++|+.+|..+... ++.++ .
T Consensus 174 l~d~~i~e~~le~l~~~L---------------~~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySY 238 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---------------TIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSY 238 (459)
T ss_pred hhcccCCHHHHHHHHHHH---------------hcCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccH
Confidence 677888888887776554 235789999999999999999999988431 12222 1
Q ss_pred hhhhcccc----ccc--HHHHHHHHHHHHhh--CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc--cCC
Q 045279 192 TEVVSGVS----GAS--EENIRDLFSKAYRT--APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL--VQP 261 (702)
Q Consensus 192 ~~l~~~~~----g~~--~~~~~~~f~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~--~~~ 261 (702)
.+++.++. |.. ......++..|... .|.+||||||+.... .++...++..++.-.+. ...
T Consensus 239 eDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 239 EDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH----------HHhhhhhhhhccccccccccce
Confidence 23333321 111 11233445556543 578999999975442 23445566666632110 000
Q ss_pred CCCCCC-CCCCCCCCCeEEEEEecCCCC----CCCccccCCCCcceEEEeCC
Q 045279 262 GDQKSK-SDASDSKPGYVLVIGATNRPD----AVDPALRRPGRFDREIVLGV 308 (702)
Q Consensus 262 ~~~~~~-~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~~~i~~~~ 308 (702)
.-..+. .......|.++.||||+|..+ .+|.|++| || ..|.+.+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF-~fi~i~p 357 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RF-SFIDIEP 357 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hh-heEEecC
Confidence 000000 011234578899999999987 79999999 99 5566665
No 292
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-10 Score=116.64 Aligned_cols=185 Identities=26% Similarity=0.387 Sum_probs=126.0
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc-cccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG-VSGA 201 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~-~~g~ 201 (702)
.-|+|++++|+.+.-++....++.++-..+.- -.|.|+|.+||+|+|||-+||-||+..+.||+.+.++.+..- |+|.
T Consensus 15 ~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGr 94 (444)
T COG1220 15 RYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGR 94 (444)
T ss_pred hHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccc
Confidence 35899999999998777776666665544432 267899999999999999999999999999988776633210 0000
Q ss_pred --------------------------------------------------------------------------------
Q 045279 202 -------------------------------------------------------------------------------- 201 (702)
Q Consensus 202 -------------------------------------------------------------------------------- 201 (702)
T Consensus 95 DVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIe 174 (444)
T COG1220 95 DVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIE 174 (444)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEE
Confidence
Q ss_pred ---------------------cHHHHHHHHHHHH---------------------------------------hhCCceE
Q 045279 202 ---------------------SEENIRDLFSKAY---------------------------------------RTAPSIV 221 (702)
Q Consensus 202 ---------------------~~~~~~~~f~~a~---------------------------------------~~~p~il 221 (702)
...++..+|..+. ..+..|+
T Consensus 175 iev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIv 254 (444)
T COG1220 175 IEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIV 254 (444)
T ss_pred EEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeE
Confidence 0011222222221 0123499
Q ss_pred EechhhHhhhcchhhhHHHHH-HHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEec----CCCCCCCccccC
Q 045279 222 FIDEIDAIASKRENLQREMER-RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGAT----NRPDAVDPALRR 296 (702)
Q Consensus 222 ~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~at----n~~~~ld~al~r 296 (702)
||||||.++...+....+.++ -+...||..+++.......|.. ...++++||+. ..|.+|-|.|.-
T Consensus 255 FIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~V---------kTdHILFIasGAFh~sKPSDLiPELQG 325 (444)
T COG1220 255 FIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPV---------KTDHILFIASGAFHVAKPSDLIPELQG 325 (444)
T ss_pred EEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccccc---------ccceEEEEecCceecCChhhcChhhcC
Confidence 999999999877543323333 3445677777765433222221 23569999986 447788899966
Q ss_pred CCCcceEEEeCCCCHHHHHHHHH
Q 045279 297 PGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 297 ~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
||+-.+++...+.++...||.
T Consensus 326 --RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 --RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred --CCceEEEcccCCHHHHHHHHc
Confidence 999999999999999999985
No 293
>PRK06620 hypothetical protein; Validated
Probab=99.20 E-value=2.9e-10 Score=112.43 Aligned_cols=164 Identities=12% Similarity=0.174 Sum_probs=100.1
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG 543 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~ 543 (702)
..++||||||||||++++++++..+..++. .... ....+ ....+|+|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999877653322 1000 00111 134799999999552
Q ss_pred hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc--cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccCCCCCC-
Q 045279 544 WVVERLLNQLLIELDGADKRKGVFVIGATNRPDV--MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKKPIDDS- 618 (702)
Q Consensus 544 ~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~--ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~~- 618 (702)
...+-.+++.+. .....+||+++..|.. + +++.+ |+. .++.+..|+.+++..+++..+...++..+
T Consensus 99 ---~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---EPALLHIFNIIN---EKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---HHHHHHHHHHHH---hcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 233334444432 2344667766655543 5 77776 885 36899999999999999988876555433
Q ss_pred CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 619 VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 619 ~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
.-++.++.. + .-+.+.+.+++......+... ...||...+.+++
T Consensus 170 ev~~~L~~~--~-~~d~r~l~~~l~~l~~~~~~~------------~~~it~~~~~~~l 213 (214)
T PRK06620 170 QIIDFLLVN--L-PREYSKIIEILENINYFALIS------------KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHH--c-cCCHHHHHHHHHHHHHHHHHc------------CCCCCHHHHHHHh
Confidence 335666632 1 223445555555432211111 1258888887775
No 294
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.20 E-value=1.6e-10 Score=114.94 Aligned_cols=168 Identities=21% Similarity=0.359 Sum_probs=102.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHH-HHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESEL-AVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
...++||||+|+|||+|++++++++ +..++.+++.++...+...... .+..+....+ ...+|+||+++.+.+
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC
Confidence 3458999999999999999999864 5678899988877654332111 1222222222 567999999999984
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 611 (702)
+ ...+..|...++......+.+||.+...|. .+++.+.+ ||. ..+.+..|+.+.|..|++.++.
T Consensus 112 ~---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~ 180 (219)
T PF00308_consen 112 K---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAK 180 (219)
T ss_dssp H---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHH
T ss_pred c---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHH
Confidence 3 223344444444433344555555545555 35666666 875 4788899999999999999999
Q ss_pred cCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 612 KKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 612 ~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
..++.-+.+ ++.++.. . .-+-++|..+++...
T Consensus 181 ~~~~~l~~~v~~~l~~~--~-~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 181 ERGIELPEEVIEYLARR--F-RRDVRELEGALNRLD 213 (219)
T ss_dssp HTT--S-HHHHHHHHHH--T-TSSHHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHh--h-cCCHHHHHHHHHHHH
Confidence 887765444 3455532 1 225566666666544
No 295
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.19 E-value=2.2e-10 Score=121.82 Aligned_cols=154 Identities=29% Similarity=0.316 Sum_probs=107.5
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhC------------------------CeEEEEecccccccCcCchHHHHHHHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAG------------------------ANFIHIKGPELLNKYVGESELAVRTLFSRA 518 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~------------------------~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a 518 (702)
+..+||+||||+|||++|.++|+.+. ..++++++++.... .-....++.+-...
T Consensus 24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~ 101 (325)
T COG0470 24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKI--DIIVEQVRELAEFL 101 (325)
T ss_pred CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCC--cchHHHHHHHHHHh
Confidence 33599999999999999999999885 57888888775442 12334455554443
Q ss_pred Hh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 519 RT----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 519 ~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
.. ....|++|||+|.+. ....+.++..|+.. ..++.+|++||.+..+-+.+.+ |+ ..+.|
T Consensus 102 ~~~~~~~~~kviiidead~mt-----------~~A~nallk~lEep--~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f 165 (325)
T COG0470 102 SESPLEGGYKVVIIDEADKLT-----------EDAANALLKTLEEP--PKNTRFILITNDPSKILPTIRS--RC-QRIRF 165 (325)
T ss_pred ccCCCCCCceEEEeCcHHHHh-----------HHHHHHHHHHhccC--CCCeEEEEEcCChhhccchhhh--cc-eeeec
Confidence 22 356899999999999 78999999999854 4567788889999999998887 88 47888
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAAL 650 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~ 650 (702)
++|+........+ +..+..++ ..+++|++..++.....+.
T Consensus 166 ~~~~~~~~i~~~e----------~~~l~~i~------~~~~gd~r~~i~~lq~~~~ 205 (325)
T COG0470 166 KPPSRLEAIAWLE----------DQGLEEIA------AVAEGDARKAINPLQALAA 205 (325)
T ss_pred CCchHHHHHHHhh----------ccchhHHH------HHHHHHHHcCCCHHHHHHH
Confidence 8766554443333 22333343 2245666665554443333
No 296
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=4.6e-10 Score=123.24 Aligned_cols=168 Identities=17% Similarity=0.243 Sum_probs=107.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcccccccHH---HHHHHHHHHHhhCCceEEechhhHh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEE---NIRDLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~~~g~~~~---~~~~~f~~a~~~~p~il~iDEid~l 229 (702)
.++++|||++|+|||+|++++++.+ +..++++++.++...+...... .+..+.... ....+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 4679999999999999999999865 4678899998877655433222 111111111 24569999999988
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEE
Q 045279 230 ASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REI 304 (702)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i 304 (702)
..... ....|...++.... .+..+||.+...|. .+++++.+ ||. ..+
T Consensus 219 ~~k~~---------~~e~lf~l~N~~~~-----------------~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~ 270 (450)
T PRK14087 219 SYKEK---------TNEIFFTIFNNFIE-----------------NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSI 270 (450)
T ss_pred cCCHH---------HHHHHHHHHHHHHH-----------------cCCcEEEECCCCHHHHhhccHHHHH--HHhCCcee
Confidence 64321 11223333333221 12233443333444 46789988 884 567
Q ss_pred EeCCCCHHHHHHHHHHhhcCccc--CCc-ccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 305 VLGVPDENARVQILSVLTRNLRV--EGS-FDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 305 ~~~~p~~~er~~Il~~~~~~~~~--~~~-~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+..|+.++|.+|++..++.... ... ..+..++....| +.|.+..++.++.
T Consensus 271 ~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 271 AIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred ccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHH
Confidence 89999999999999988876443 122 235556666655 7777777777654
No 297
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.19 E-value=1e-10 Score=111.15 Aligned_cols=122 Identities=24% Similarity=0.338 Sum_probs=80.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC----CeEEEechhhhcccccccHHHHHHHHHHH----HhhCCceEEechhhH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGV----PFYKISATEVVSGVSGASEENIRDLFSKA----YRTAPSIVFIDEIDA 228 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~il~iDEid~ 228 (702)
|..++||+||+|||||.+|+++|+.+.. +++.++++.+..+. .....+..++..+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5578999999999999999999999985 99999999987621 0011111111111 011113999999999
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC
Q 045279 229 IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD 288 (702)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~ 288 (702)
+.+..+...+.....+.+.||..+++.......+. .. .-.+++||+|+|--.
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~-----~v---d~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGR-----TV---DTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCC-----EE---EGTTEEEEEEESSST
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccce-----EE---EeCCceEEEeccccc
Confidence 99864444556667788899999997543211110 11 124599999999744
No 298
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.18 E-value=8.2e-11 Score=130.65 Aligned_cols=200 Identities=24% Similarity=0.324 Sum_probs=123.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH-----------hCCCeEEE
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE-----------TGVPFYKI 189 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~-----------l~~~~~~i 189 (702)
.+|++|+|.+..++++.+.+.. -.....+|||+|++||||+++|++|-.. .+.||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~-----------~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILL-----------YARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 4799999999999999887733 2344578999999999999999999776 45799999
Q ss_pred echhhhccc-----cc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 190 SATEVVSGV-----SG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 190 ~~~~l~~~~-----~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
||+.+.... .| .....-.++|+.|.+ .+||||||+.|....+ ..|+..+++..
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q-----------~kLl~~L~e~~ 350 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLPLQ-----------TRLLRVLEEKE 350 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHHHH-----------HHHHhhhhcCe
Confidence 999875431 11 111112346666643 3999999998875433 34666666422
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCCC--C-----CCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcC-
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRPD--A-----VDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRN- 324 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~--~-----ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~- 324 (702)
. ...|+. ...+-++++|++||..- . +.+.+.. |+ ..+.+..|+..+|.+ ++..++..
T Consensus 351 ~-~r~G~~-------~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~ 419 (538)
T PRK15424 351 V-TRVGGH-------QPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RL-SILRLQLPPLRERVADILPLAESFLKQS 419 (538)
T ss_pred E-EecCCC-------ceeccceEEEEecCCCHHHHHhcccchHHHHH--Hh-cCCeecCCChhhchhHHHHHHHHHHHHH
Confidence 1 111111 11234589999998732 1 2223333 44 457888888877764 33444443
Q ss_pred ---cccCCcccH--------HHHH-hhCCCCCHHHHHHHHHHHHH
Q 045279 325 ---LRVEGSFDL--------VKIA-RSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 325 ---~~~~~~~~~--------~~la-~~t~g~~~~dl~~l~~~a~~ 357 (702)
.......+. ..+. ..++| +.++|++++.+++.
T Consensus 420 ~~~~~~~~~~~a~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i 463 (538)
T PRK15424 420 LAALSAPFSAALRQGLQQCETLLLHYDWPG-NVRELRNLMERLAL 463 (538)
T ss_pred HHHcCCCCCHHHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHH
Confidence 222111111 1122 22344 77889888887765
No 299
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.18 E-value=7.9e-11 Score=123.63 Aligned_cols=165 Identities=23% Similarity=0.410 Sum_probs=104.9
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-------CCCeE-------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-------GVPFY------- 187 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-------~~~~~------- 187 (702)
-|..|+|++++|..+.-.+..| ...+++|.|+||+||||+++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4889999999999887544221 24679999999999999999999887 22221
Q ss_pred --EEech-------------------hhhc-----ccccccHHH----------HHHHHHHHHhhCCceEEechhhHhhh
Q 045279 188 --KISAT-------------------EVVS-----GVSGASEEN----------IRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 188 --~i~~~-------------------~l~~-----~~~g~~~~~----------~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
..+|. ++.. ...|..... -.+++..| .+.+|||||++.+..
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~ 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLED 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCH
Confidence 11111 1111 112221100 01222222 235999999998764
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCCCC
Q 045279 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGVPD 310 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~p~ 310 (702)
. ....|+..|++....+...+ .....+.++++|+++|+.+ .+++++.. ||...+.++.|.
T Consensus 146 ~-----------~Q~~Ll~~l~~g~~~v~r~G------~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~ 206 (337)
T TIGR02030 146 H-----------LVDVLLDVAASGWNVVEREG------ISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVR 206 (337)
T ss_pred H-----------HHHHHHHHHHhCCeEEEECC------EEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCC
Confidence 3 33457777764321111111 1112345689999999865 79999999 999899999997
Q ss_pred H-HHHHHHHHHh
Q 045279 311 E-NARVQILSVL 321 (702)
Q Consensus 311 ~-~er~~Il~~~ 321 (702)
. +++.+|++..
T Consensus 207 ~~eer~eIL~~~ 218 (337)
T TIGR02030 207 DVELRVEIVERR 218 (337)
T ss_pred CHHHHHHHHHhh
Confidence 6 8899999764
No 300
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=6.3e-10 Score=118.58 Aligned_cols=183 Identities=21% Similarity=0.226 Sum_probs=119.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE-------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY------------- 187 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~------------- 187 (702)
-++++|+|++.+++.+...+.. -+-++.+||+||+|+||+++|.++|+.+-+.--
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l 83 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSL 83 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccc
Confidence 3899999999999999987732 234567999999999999999999998732110
Q ss_pred -----EEechhhhcc-------------ccc------ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHH
Q 045279 188 -----KISATEVVSG-------------VSG------ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQRE 239 (702)
Q Consensus 188 -----~i~~~~l~~~-------------~~g------~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~ 239 (702)
.-+|..+..+ ..+ -....++.+.+.+. .+.+.|++|||+|.+...
T Consensus 84 ~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~------- 156 (365)
T PRK07471 84 AIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNAN------- 156 (365)
T ss_pred cCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-------
Confidence 0001111000 000 01233444444332 345779999999988633
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 240 MERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 240 ~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
..+.|+..+++. +++.++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+++.
T Consensus 157 ----aanaLLK~LEep-------------------p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 157 ----AANALLKVLEEP-------------------PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALA 210 (365)
T ss_pred ----HHHHHHHHHhcC-------------------CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHH
Confidence 345688888752 4457788889999899999998 98 779999999999998887
Q ss_pred HhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 320 VLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 320 ~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
...... ....+..++..+.| +++....++
T Consensus 211 ~~~~~~---~~~~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 211 AAGPDL---PDDPRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HhcccC---CHHHHHHHHHHcCC-CHHHHHHHh
Confidence 653211 11122455555555 443334443
No 301
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.17 E-value=6.2e-11 Score=125.86 Aligned_cols=158 Identities=28% Similarity=0.379 Sum_probs=105.9
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--ccccc
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--VSGAS 202 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--~~g~~ 202 (702)
.++|.++++..+...+ ..+.++||.||||||||++|+.+|..++.+|+.+.|..-... ..|..
T Consensus 25 ~~~g~~~~~~~~l~a~---------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLAL---------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHH---------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCch
Confidence 3778777776665433 346789999999999999999999999999999999854322 22222
Q ss_pred HHHHH------------HHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 203 EENIR------------DLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 203 ~~~~~------------~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
.-... .+|.... +++|+|||+...+. +.+.|+..|++....+.....
T Consensus 90 ~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~-----------~q~aLl~~l~e~~vtv~~~~~------ 148 (329)
T COG0714 90 AYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPE-----------VQNALLEALEERQVTVPGLTT------ 148 (329)
T ss_pred hHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHH-----------HHHHHHHHHhCcEEEECCcCC------
Confidence 11111 1111111 39999999876643 445688888876553332221
Q ss_pred CCCCCCeEEEEEecCC-----CCCCCccccCCCCcceEEEeCCC-CHHHHHHHHHHh
Q 045279 271 SDSKPGYVLVIGATNR-----PDAVDPALRRPGRFDREIVLGVP-DENARVQILSVL 321 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~-----~~~ld~al~r~~Rf~~~i~~~~p-~~~er~~Il~~~ 321 (702)
..-+..++||+|+|+ ...+++++++ ||...+.+++| +..+...++...
T Consensus 149 -~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~ 202 (329)
T COG0714 149 -IRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARV 202 (329)
T ss_pred -cCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhC
Confidence 122445899999995 3468999999 99888999999 555454444433
No 302
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.17 E-value=6.6e-11 Score=109.27 Aligned_cols=110 Identities=29% Similarity=0.388 Sum_probs=73.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc------cCcCchHHH--HHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN------KYVGESELA--VRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~------~~~g~~~~~--~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
+++|+||||||||++|+.+|+.++.+++.+.++.... .|.-..... ....+..+.. .++|+||||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 5899999999999999999999999999998765332 221100000 0000111111 67899999999888
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCC-----------CCC------cEEEEEecCCCC----ccCccccCCCcc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGAD-----------KRK------GVFVIGATNRPD----VMDRAVLRPGRF 588 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~------~~~vI~atn~~~----~ld~a~~r~gRf 588 (702)
..++..|+..++... ... ++.+|+|+|... .+++++++ ||
T Consensus 79 ----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 778888888777521 111 389999999988 89999999 87
No 303
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.17 E-value=2.5e-10 Score=119.89 Aligned_cols=153 Identities=23% Similarity=0.330 Sum_probs=101.8
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-------CCeEE--------
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-------GANFI-------- 492 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~-------- 492 (702)
|..|+|++.+|..+.-.... +...+++|.|+||+|||+++++++..+ +.++-
T Consensus 3 f~~ivgq~~~~~al~~~~~~-------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVID-------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred ccccccHHHHHHHHHHHhcC-------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 67789999998876443221 224679999999999999999999876 22221
Q ss_pred -----EE--ec-------------cccc-----ccCcCchH--HH--------HHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 493 -----HI--KG-------------PELL-----NKYVGESE--LA--------VRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 493 -----~i--~~-------------~~l~-----~~~~g~~~--~~--------~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
.. .. .++- +..+|... .. ...++.+ ...++|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~-- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLE-- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCC--
Confidence 00 00 0100 01222210 00 0111222 245899999999998
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCCH-HHHHH
Q 045279 538 RGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPTP-DERGL 604 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~~-~~r~~ 604 (702)
..+++.|+..|+... ...++++|+++|..+ .+.++++. ||...+.++.|.. +++.+
T Consensus 145 ---------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 145 ---------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred ---------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 788888888886421 234678888888655 68889998 9999999999975 88888
Q ss_pred HHHHH
Q 045279 605 ILEAL 609 (702)
Q Consensus 605 il~~~ 609 (702)
|++..
T Consensus 214 IL~~~ 218 (337)
T TIGR02030 214 IVERR 218 (337)
T ss_pred HHHhh
Confidence 98874
No 304
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-10 Score=123.12 Aligned_cols=201 Identities=21% Similarity=0.228 Sum_probs=128.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHH----hCCeEEEEeccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANE----AGANFIHIKGPELL 500 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~----~~~~~~~i~~~~l~ 500 (702)
...+.+++|-..--+.+.+.+.. --+...++|++|++||||+.+|++|... ...||+.+||+.+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34566777777665555554433 1244678999999999999999999753 36799999998876
Q ss_pred cc-------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-------
Q 045279 501 NK-------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA------- 560 (702)
Q Consensus 501 ~~-------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~------- 560 (702)
.. |.| ....-..+|+.| ..++||+|||..+. ...+..|++.|+..
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A---~GGtLfLDEI~~LP-----------~~~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQA---NGGTLFLDEIHRLP-----------PEGQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheec---CCCEEehhhhhhCC-----------HhHHHHHHHHHHcCceEecCC
Confidence 43 222 122234566666 56899999999999 78888999988862
Q ss_pred --CCCCcEEEEEecCC--CCccCc--cccCCCccceEEEcCCCCHH--HHHHHHHHHhc----cCCCCCCCCHHHHhhhh
Q 045279 561 --DKRKGVFVIGATNR--PDVMDR--AVLRPGRFGKLLYVPLPTPD--ERGLILEALAR----KKPIDDSVDLHTIAQSK 628 (702)
Q Consensus 561 --~~~~~~~vI~atn~--~~~ld~--a~~r~gRf~~~i~~~~p~~~--~r~~il~~~~~----~~~~~~~~~~~~la~~~ 628 (702)
....+|.+|+|||. .+.+-. .+.+ -|+...|.+|+...+ ++..+++++++ +.+.....+.......-
T Consensus 208 ~~~~~~dVRli~AT~~~l~~~~~~g~dl~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 208 SQPRPVDVRLICATTEDLEEAVLAGADLTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCCcCCCceeeeccccCHHHHHHhhcchhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 23456889999875 233433 4443 155556666655543 34444455544 34433333332222212
Q ss_pred cCCCCCH--HHHHHHHHHHHHHHHHH
Q 045279 629 FCENLSG--ADLAAMMNEAAMAALED 652 (702)
Q Consensus 629 ~~~~~sg--~dl~~~~~~a~~~a~~~ 652 (702)
....|.| ++|+|+|+.++..+...
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQASGE 312 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhccc
Confidence 2234555 99999999999777543
No 305
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.17 E-value=1.9e-10 Score=122.90 Aligned_cols=126 Identities=22% Similarity=0.459 Sum_probs=82.3
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCC-------eEEEEec----ccccccC----cCch--HHHHHHHHHHHHhC--C
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGA-------NFIHIKG----PELLNKY----VGES--ELAVRTLFSRARTC--S 522 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~-------~~~~i~~----~~l~~~~----~g~~--~~~~~~~f~~a~~~--~ 522 (702)
...+++|+||||||||++|+.+|..+.. .++.+.. .+++..+ +|.. ...+..++..|... .
T Consensus 193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~ 272 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEK 272 (459)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccC
Confidence 3578999999999999999999998742 1233332 2333222 1211 11234555667643 4
Q ss_pred CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC--------------------CCCCCcEEEEEecCCCC----cc
Q 045279 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG--------------------ADKRKGVFVIGATNRPD----VM 578 (702)
Q Consensus 523 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~--------------------~~~~~~~~vI~atn~~~----~l 578 (702)
|.||||||++.... .+++.++++.|+. +.-..++.||+|+|..+ .+
T Consensus 273 ~~vliIDEINRani----------~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~l 342 (459)
T PRK11331 273 KYVFIIDEINRANL----------SKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVV 342 (459)
T ss_pred CcEEEEehhhccCH----------HHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhc
Confidence 78999999998763 3444455554441 33456899999999987 89
Q ss_pred CccccCCCccceEEEcCC-CCHH
Q 045279 579 DRAVLRPGRFGKLLYVPL-PTPD 600 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~-p~~~ 600 (702)
|.|++| ||. .|.+.+ ++..
T Consensus 343 D~AlrR--RF~-fi~i~p~~~~~ 362 (459)
T PRK11331 343 DYALRR--RFS-FIDIEPGFDTP 362 (459)
T ss_pred cHHHHh--hhh-eEEecCCCChH
Confidence 999999 996 444443 4543
No 306
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.16 E-value=9.4e-11 Score=130.37 Aligned_cols=201 Identities=24% Similarity=0.317 Sum_probs=122.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG 197 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~ 197 (702)
.+|++|+|....++++.+.+.. -.....+|||+|++||||+++|++|.... +.||+.+||..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~-----------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL-----------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 5799999999999998887743 23445789999999999999999997653 579999999877532
Q ss_pred -----ccc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 198 -----VSG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 198 -----~~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
..| .....-.++|+.|.+ .+||||||+.|....+ ..|+..+++... ...|+.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~~Q-----------~~Ll~~L~~~~~-~r~g~~ 342 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPLPLQ-----------TRLLRVLEEREV-VRVGGT 342 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCHHHH-----------HHHHHHHhcCcE-EecCCC
Confidence 111 111112456666643 4999999998885433 346666654221 111111
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCC--CCCc-----cccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCcc----cCC
Q 045279 265 KSKSDASDSKPGYVLVIGATNRPD--AVDP-----ALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLR----VEG 329 (702)
Q Consensus 265 ~~~~~~~~~~~~~v~vI~atn~~~--~ld~-----al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~----~~~ 329 (702)
...+-++++|++|+..- .+.. .|.. |+ ..+.+..|+..+|.+ ++..++.... ...
T Consensus 343 -------~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 412 (526)
T TIGR02329 343 -------EPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPD 412 (526)
T ss_pred -------ceeeecceEEeccCCCHHHHhhhcchhHHHHH--hc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 11234579999997742 2222 2323 44 346777888777654 3344444321 111
Q ss_pred cccH-HH-------HH-hhCCCCCHHHHHHHHHHHHHH
Q 045279 330 SFDL-VK-------IA-RSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 330 ~~~~-~~-------la-~~t~g~~~~dl~~l~~~a~~~ 358 (702)
..+. .. +. ..++| +.++|++++.+++..
T Consensus 413 ~~~a~~~~~~~~~~L~~y~WPG-NvrEL~nvier~~i~ 449 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPWPG-NVRELRNLVERLALE 449 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHh
Confidence 1111 11 22 22343 678888888877654
No 307
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=4.7e-10 Score=118.35 Aligned_cols=152 Identities=16% Similarity=0.276 Sum_probs=111.3
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------eEEEEeccc
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------NFIHIKGPE 498 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------~~~~i~~~~ 498 (702)
.|+++.|++.+++.+...+.. ...+..+||+||+|+|||++|+.+|..+.+ .+..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 578999999998888775522 245567899999999999999999997633 222332210
Q ss_pred ccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 499 LLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+. .-+...+|.+.+.+. .....|++||++|.+. ....|.||..|+.. ..++++|++|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~-----------~~a~naLLK~LEep--p~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT-----------EQAQNAFLKTIEEP--PKGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC-----------HHHHHHHHHHhcCC--CCCeEEEEEeCC
Confidence 11 112334666666443 3456799999999998 88899999999964 456666667788
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
++.+-|.+.+ |+ .++.|+.|+.++...++...+
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 8999999988 88 599999999998877776554
No 308
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.15 E-value=2.7e-10 Score=104.59 Aligned_cols=122 Identities=34% Similarity=0.479 Sum_probs=83.3
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCe---EEEEeccccccc--------------CcCchHHHHHHHHHHHHhCCCeE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGAN---FIHIKGPELLNK--------------YVGESELAVRTLFSRARTCSPCI 525 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~---~~~i~~~~l~~~--------------~~g~~~~~~~~~f~~a~~~~~~v 525 (702)
+.+++|+||||||||++++.+|..+... ++.++++..... .........+.+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4578999999999999999999998764 888887764432 22345666778888898877899
Q ss_pred EEEeCcchhhcccCCCCchHHHHHHHHHHH------hhhCCCCCCcEEEEEecCC-CCccCccccCCCccceEEEcCCC
Q 045279 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLI------ELDGADKRKGVFVIGATNR-PDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 526 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~------~l~~~~~~~~~~vI~atn~-~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
|||||++.+.... ...... .........+..+|+++|. ....+..+.+ |++..+.++.+
T Consensus 82 iiiDei~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE-----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH-----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999988432 111111 0111123456778888887 3334444444 88888877654
No 309
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.15 E-value=7.6e-10 Score=121.12 Aligned_cols=214 Identities=24% Similarity=0.268 Sum_probs=136.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhc--cCCCcc-------------------cccCCCCCceEEEECCCCCCHHHHHHHH
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPL--YHPQLP-------------------QWLGVRPMAGILLYGPPGCGKTKLAHAI 178 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~--~~~~~~-------------------~~~~~~~~~~vLl~GppGtGKT~la~~l 178 (702)
...|.||.|-+.+=+.+..++..+- -+.+-+ ...+.++.+-+||+||||-||||||+.|
T Consensus 267 Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHVi 346 (877)
T KOG1969|consen 267 PKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVI 346 (877)
T ss_pred hhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHH
Confidence 3479999999998888877775321 111000 1113345667999999999999999999
Q ss_pred HHHhCCCeEEEechhhhcccccccHHHHHHHHHHHH--------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHH
Q 045279 179 ANETGVPFYKISATEVVSGVSGASEENIRDLFSKAY--------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250 (702)
Q Consensus 179 a~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 250 (702)
|+..|..++.||+++-. +...++..+..|. ...|..|+|||||--. ...++.++.
T Consensus 347 AkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-----------~~~Vdvils 409 (877)
T KOG1969|consen 347 AKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-----------RAAVDVILS 409 (877)
T ss_pred HHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-----------HHHHHHHHH
Confidence 99999999999999843 2333444444443 2568899999997333 334555655
Q ss_pred HHhhhcc-ccCCCCC-----CCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 251 CMDESHR-LVQPGDQ-----KSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 251 ~ld~~~~-~~~~~~~-----~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
.+..-.. .+..... ..+....... -||+.||... -|+|+.---|..++.|.+|+..-..+-|+.++..
T Consensus 410 lv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R----PIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~r 483 (877)
T KOG1969|consen 410 LVKATNKQATGKQAKKDKKRKKKRSKLLTR----PIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHR 483 (877)
T ss_pred HHHhhcchhhcCcccchhhhhhhccccccC----CEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhh
Confidence 5542111 1111111 1111111222 2777788754 4666432257788999999999999999988877
Q ss_pred cccCCcc-cHHHHHhhCCCCCHHHHHHHHHHHHHHHH
Q 045279 325 LRVEGSF-DLVKIARSTPGFVGADLAALANKAGNLAM 360 (702)
Q Consensus 325 ~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a~~~a~ 360 (702)
.....+. .+..|+..+.+ |++..++....++.
T Consensus 484 E~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 484 ENMRADSKALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred hcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 7654432 36667766665 78777776655553
No 310
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.15 E-value=8.1e-10 Score=113.72 Aligned_cols=68 Identities=41% Similarity=0.503 Sum_probs=46.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechhhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVV 195 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~~l~ 195 (702)
....+.++|+.++.+..--.+ ..++. +.-.++++||.||||||||+||-+||++|+ .||..++++++.
T Consensus 20 ~~~~~GlVGQ~~AReAagiiv-~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 20 RYIADGLVGQEKAREAAGIIV-DMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp -SEETTEES-HHHHHHHHHHH-HHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred eeccccccChHHHHHHHHHHH-HHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 334678999999998876333 33322 344678999999999999999999999996 688777777544
No 311
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=5e-10 Score=117.09 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=121.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------- 185 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------- 185 (702)
.|++|+|++.+++.+...+.. -+-++.+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 589999999999999987732 1345789999999999999999999987322
Q ss_pred --eEEEechhhhccc---------cc--------ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHH
Q 045279 186 --FYKISATEVVSGV---------SG--------ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMER 242 (702)
Q Consensus 186 --~~~i~~~~l~~~~---------~g--------~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 242 (702)
++.+.+.....+. .| -.-..++.+.+.+. .+...|++||++|.|...
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~---------- 139 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA---------- 139 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH----------
Confidence 1222221111110 00 00123444444432 234569999999988643
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 243 ~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
..+.||..+++- | +.++|..|+.++.+-|.+++ |+ ..+.|+.|+.++..+++....
T Consensus 140 -aaNaLLK~LEEP-------------------p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 140 -AANALLKTLEEP-------------------G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred -HHHHHHHHHhCC-------------------C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhh
Confidence 345688888862 3 46777888899999999999 98 779999999999999998754
Q ss_pred cCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 323 RNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 323 ~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..... ..+...++....| +++....++.
T Consensus 196 ~~~~~--~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 196 DEEIL--NINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred ccccc--hhHHHHHHHHcCC-CHHHHHHHHH
Confidence 32111 1123556666666 4444444443
No 312
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.13 E-value=2.8e-10 Score=130.48 Aligned_cols=153 Identities=25% Similarity=0.337 Sum_probs=104.2
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh--------------------
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-------------------- 487 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-------------------- 487 (702)
|..|+|++.++..+.-.... +...|+||.|++|||||++|++++..+
T Consensus 3 f~~ivGq~~~~~al~~~av~-------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVD-------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred cchhcChHHHHHHHHHHhhC-------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 67889999888766432221 122579999999999999999999987
Q ss_pred ---------------CCeEEEEecccccccCcCch--HHHH--------HHHHHHHHhCCCeEEEEeCcchhhcccCCCC
Q 045279 488 ---------------GANFIHIKGPELLNKYVGES--ELAV--------RTLFSRARTCSPCILFFDEVDALTTKRGKEG 542 (702)
Q Consensus 488 ---------------~~~~~~i~~~~l~~~~~g~~--~~~~--------~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~ 542 (702)
..+|+.+.++......+|.- +..+ ..++.. ...+||||||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~---A~~GiL~lDEi~~l~------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAE---AHRGILYIDEVNLLD------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceee---cCCCeEEeChhhhCC-------
Confidence 24566655443333333321 1101 011111 244799999999999
Q ss_pred chHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCC-HHHHHHHHHHH
Q 045279 543 GWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPT-PDERGLILEAL 609 (702)
Q Consensus 543 ~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~-~~~r~~il~~~ 609 (702)
..+++.|+..|+... ...+++||+|+|..+ .+.++++. ||+..|.++.+. .+++.+|++..
T Consensus 140 ----~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 140 ----DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred ----HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 888999999887421 124688999988643 57888888 999989888775 57777777654
No 313
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.13 E-value=7e-10 Score=116.37 Aligned_cols=160 Identities=19% Similarity=0.298 Sum_probs=106.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-------CeEEEEe--
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-------ANFIHIK-- 495 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-------~~~~~i~-- 495 (702)
...|.+|+|++++|..|...... +...|+||.||+|||||++|++++..+. .+|....
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~-------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVID-------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccC-------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 34689999999999887654332 2346899999999999999999988662 2222000
Q ss_pred ----cccccc---------------cC----cCchHHH------HHHHHHHH---------HhCCCeEEEEeCcchhhcc
Q 045279 496 ----GPELLN---------------KY----VGESELA------VRTLFSRA---------RTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 496 ----~~~l~~---------------~~----~g~~~~~------~~~~f~~a---------~~~~~~vl~iDEid~l~~~ 537 (702)
+++..+ ++ .|-++.. +...|... .....++||+||++.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~-- 157 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD-- 157 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC--
Confidence 000000 00 0112221 11122111 12245899999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhhCC-----------CCCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCC-HHHHHH
Q 045279 538 RGKEGGWVVERLLNQLLIELDGA-----------DKRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPT-PDERGL 604 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~-~~~r~~ 604 (702)
..+++.|+..|+.. ....++++|++.|..+ .+.++++. ||...+.+..|+ .+++.+
T Consensus 158 ---------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 158 ---------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred ---------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHH
Confidence 78888888887641 1234678888888655 58888888 999999999998 588999
Q ss_pred HHHHHh
Q 045279 605 ILEALA 610 (702)
Q Consensus 605 il~~~~ 610 (702)
|++...
T Consensus 227 il~~~~ 232 (350)
T CHL00081 227 IVEQRT 232 (350)
T ss_pred HHHhhh
Confidence 998753
No 314
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.13 E-value=2.5e-10 Score=121.24 Aligned_cols=132 Identities=33% Similarity=0.479 Sum_probs=94.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc--CcCchHHHHH------------HHHHHHHhCCCeEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK--YVGESELAVR------------TLFSRARTCSPCILF 527 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~--~~g~~~~~~~------------~~f~~a~~~~~~vl~ 527 (702)
...++||.||||||||++|+.+|..++.+|+.+.+...+.. .+|...-... -+|.... +|+|
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 45789999999999999999999999999999998754432 1121111110 0111111 4999
Q ss_pred EeCcchhhcccCCCCchHHHHHHHHHHHhhhC----------CCCCCcEEEEEecCC-----CCccCccccCCCccceEE
Q 045279 528 FDEVDALTTKRGKEGGWVVERLLNQLLIELDG----------ADKRKGVFVIGATNR-----PDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 528 iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~----------~~~~~~~~vI~atn~-----~~~ld~a~~r~gRf~~~i 592 (702)
+|||+... ..+++.|+..|+. ..-....+||+|+|. -..+.+|+++ ||...+
T Consensus 118 ~DEInra~-----------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAP-----------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCC-----------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 99999988 8889999998887 122356788888893 4568899999 998899
Q ss_pred EcCCCC-HHHHHHHHHHHh
Q 045279 593 YVPLPT-PDERGLILEALA 610 (702)
Q Consensus 593 ~~~~p~-~~~r~~il~~~~ 610 (702)
+++.|+ .++...++....
T Consensus 185 ~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 185 YVDYPDSEEEERIILARVG 203 (329)
T ss_pred ecCCCCchHHHHHHHHhCc
Confidence 999994 444544444433
No 315
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.13 E-value=1e-10 Score=123.43 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=116.5
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc----
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV---- 198 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~---- 198 (702)
|+|....++++.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 1 liG~S~~m~~~~~~~~~~-----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSE 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHH
Confidence 467777777777766332 3456779999999999999999996654 4799999998764321
Q ss_pred -cccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 199 -SGAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 199 -~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
.|.. .....++|+.|. ..+||||||+.|....+ ..|+..++... +...|+.
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~~~Q-----------~~Ll~~l~~~~-~~~~g~~------ 128 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASLLVQ-----------EKLLRVIEYGE-FERVGGS------ 128 (329)
T ss_pred HhccccccccCcccccCCchhhCC---CCEEEeCChHhCCHHHH-----------HHHHHHHHcCc-EEecCCC------
Confidence 1110 001123455553 35999999998875433 34666665421 1111111
Q ss_pred CCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----ccC----Ccc
Q 045279 271 SDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----RVE----GSF 331 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~~~----~~~ 331 (702)
...+.++++|++|+.. ..+.+.|.. || ..+.+..|+..+|.+ ++..++..+ ... ...
T Consensus 129 -~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~ 204 (329)
T TIGR02974 129 -QTLQVDVRLVCATNADLPALAAEGRFRADLLD--RL-AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTP 204 (329)
T ss_pred -ceeccceEEEEechhhHHHHhhcCchHHHHHH--Hh-cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCH
Confidence 1123458999999863 134455555 66 446778888777655 333333321 111 111
Q ss_pred -cHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 332 -DLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 332 -~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
.+..+....=-.+.++|++++..++..+
T Consensus 205 ~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 205 QAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 1233333322237788888887776543
No 316
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.12 E-value=9e-10 Score=113.37 Aligned_cols=78 Identities=27% Similarity=0.359 Sum_probs=52.7
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC------------CCccCccccCCCccc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR------------PDVMDRAVLRPGRFG 589 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~------------~~~ld~a~~r~gRf~ 589 (702)
-|+||||||+|.|. -+-++-|=+.|+.. ---+||+|||+ |+.++..|+. |+
T Consensus 278 vpGVLFIDEvHmLD-----------iEcFsfLnralEs~---~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl- 340 (398)
T PF06068_consen 278 VPGVLFIDEVHMLD-----------IECFSFLNRALESE---LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL- 340 (398)
T ss_dssp EE-EEEEESGGGSB-----------HHHHHHHHHHHTST---T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-
T ss_pred ecceEEecchhhcc-----------HHHHHHHHHHhcCC---CCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-
Confidence 47899999999998 66666666666642 22378889995 4567777877 87
Q ss_pred eEEEcCCCCHHHHHHHHHHHhccCCCC
Q 045279 590 KLLYVPLPTPDERGLILEALARKKPID 616 (702)
Q Consensus 590 ~~i~~~~p~~~~r~~il~~~~~~~~~~ 616 (702)
.+|...+++.++..+|++..++...+.
T Consensus 341 lII~t~py~~~ei~~Il~iR~~~E~v~ 367 (398)
T PF06068_consen 341 LIIRTKPYSEEEIKQILKIRAKEEDVE 367 (398)
T ss_dssp EEEEE----HHHHHHHHHHHHHHCT--
T ss_pred EEEECCCCCHHHHHHHHHhhhhhhcCc
Confidence 588899999999999999999987665
No 317
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.12 E-value=9.5e-11 Score=111.10 Aligned_cols=128 Identities=23% Similarity=0.421 Sum_probs=81.8
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-----
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----- 197 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----- 197 (702)
|+|.+..++++.+.+... ...+.+|||+|++||||+.+|++|-+.. +.||+.++|+.+...
T Consensus 1 liG~s~~m~~~~~~~~~~-----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH-----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhh
Confidence 578888888888777443 3445789999999999999999998765 479999999887433
Q ss_pred ccccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 198 VSGAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 198 ~~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
..|.. ...-.++|+.|.++ +||||||+.|....+ ..|+..++... +...|+..
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~~~Q-----------~~Ll~~l~~~~-~~~~g~~~----- 129 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPPELQ-----------AKLLRVLEEGK-FTRLGSDK----- 129 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-HHHH-----------HHHHHHHHHSE-EECCTSSS-----
T ss_pred hhccccccccccccccCCceeeccce---EEeecchhhhHHHHH-----------HHHHHHHhhch-hccccccc-----
Confidence 11211 01123678887555 999999999886543 35777776422 22222211
Q ss_pred CCCCCCeEEEEEecCC
Q 045279 271 SDSKPGYVLVIGATNR 286 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~ 286 (702)
..+-++++|++|+.
T Consensus 130 --~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 130 --PVPVDVRIIASTSK 143 (168)
T ss_dssp --EEE--EEEEEEESS
T ss_pred --cccccceEEeecCc
Confidence 12346999999986
No 318
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.5e-09 Score=112.06 Aligned_cols=102 Identities=31% Similarity=0.497 Sum_probs=77.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccccHH-HHHHHHHHHH----hhCCceEEechhhHhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGASEE-NIRDLFSKAY----RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~~~~-~~~~~f~~a~----~~~p~il~iDEid~l~~ 231 (702)
..||||.||+|+|||.||+.||+.+++||...+|+.|.. +|+|+.-. -+..++..|. +.+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 468999999999999999999999999999999999965 58887644 4556666553 23456999999999984
Q ss_pred cchhh---hHHHHHHHHHHHHHHHhhhcccc
Q 045279 232 KRENL---QREMERRIVTQLMTCMDESHRLV 259 (702)
Q Consensus 232 ~~~~~---~~~~~~~~~~~ll~~ld~~~~~~ 259 (702)
..... .+-.+.-+.+.||..+++.-..+
T Consensus 306 ~~~~i~~~RDVsGEGVQQaLLKllEGtvVnV 336 (564)
T KOG0745|consen 306 KAESIHTSRDVSGEGVQQALLKLLEGTVVNV 336 (564)
T ss_pred cCccccccccccchhHHHHHHHHhcccEEcc
Confidence 43221 12234566778999999865555
No 319
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.12 E-value=4.7e-10 Score=123.88 Aligned_cols=155 Identities=19% Similarity=0.294 Sum_probs=96.1
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----------------- 183 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----------------- 183 (702)
..|+++.|++.+++.+... +....+++|+||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 4899999999998776633 34567899999999999999999987542
Q ss_pred -----------CCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 184 -----------VPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 184 -----------~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
.||...+++.......|.....-.+.+..|.+ .+|||||++.+.. .++..|+..|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~-----------~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR-----------SVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH-----------HHHHHHHHHH
Confidence 12222222221111112111111234444433 4999999987653 3455677777
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC-----C------------------CCCccccCCCCcceEEEeCCC
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP-----D------------------AVDPALRRPGRFDREIVLGVP 309 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~-----~------------------~ld~al~r~~Rf~~~i~~~~p 309 (702)
+.....+... ......+.++++|+++|+. . .++..|+. ||+-.+.++.+
T Consensus 320 E~~~v~i~r~------g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~ 391 (499)
T TIGR00368 320 EDGSISISRA------SAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLL 391 (499)
T ss_pred HcCcEEEEec------CcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCC
Confidence 6432111111 1111235569999999973 1 47777888 99988888888
Q ss_pred CHH
Q 045279 310 DEN 312 (702)
Q Consensus 310 ~~~ 312 (702)
+..
T Consensus 392 ~~~ 394 (499)
T TIGR00368 392 PPE 394 (499)
T ss_pred CHH
Confidence 765
No 320
>PRK09087 hypothetical protein; Validated
Probab=99.11 E-value=1.2e-09 Score=109.14 Aligned_cols=163 Identities=21% Similarity=0.252 Sum_probs=100.2
Q ss_pred CCCCCcccccC---HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 118 KEGPRFQDLGG---MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 118 ~~~~~~~~i~G---~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.+..+|++++. ...+...+.+.. + .....++|+||+|+|||+|+++++...+.. +++...+
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~~l~~~~-------------~-~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~ 78 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVSLVDHWP-------------N-WPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEI 78 (226)
T ss_pred CCCCChhceeecCchHHHHHHHHhcc-------------c-CCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHc
Confidence 45568999874 333444332211 1 123459999999999999999999876544 4444332
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.. .++..... .+|+|||++.+... + ..|...++....
T Consensus 79 ~~-----------~~~~~~~~---~~l~iDDi~~~~~~----~--------~~lf~l~n~~~~----------------- 115 (226)
T PRK09087 79 GS-----------DAANAAAE---GPVLIEDIDAGGFD----E--------TGLFHLINSVRQ----------------- 115 (226)
T ss_pred ch-----------HHHHhhhc---CeEEEECCCCCCCC----H--------HHHHHHHHHHHh-----------------
Confidence 11 11112111 38999999876321 1 113333333221
Q ss_pred CCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCC
Q 045279 275 PGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTP 341 (702)
Q Consensus 275 ~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~ 341 (702)
.+..+||+++..+. ...|.+++ ||. .++.+..|+.++|.+|++..+....+....+ +..+++...
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~ 186 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRME 186 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 23466776665544 23688988 874 6789999999999999999887765544433 455665554
No 321
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.11 E-value=1.4e-11 Score=108.30 Aligned_cols=113 Identities=31% Similarity=0.481 Sum_probs=63.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEech-hhh-cccc---------cccHHHHHHHHHHHHhhCCceEEechhhH
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISAT-EVV-SGVS---------GASEENIRDLFSKAYRTAPSIVFIDEIDA 228 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~-~l~-~~~~---------g~~~~~~~~~f~~a~~~~p~il~iDEid~ 228 (702)
||||.|+||+|||++|+++|+.++..|..|.++ ++. +... +...-.-.-+| ..|+++|||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 699999999999999999999999999888775 221 1111 11111111122 13999999987
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-----CCCccccCCCCc
Q 045279 229 IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-----AVDPALRRPGRF 300 (702)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf 300 (702)
..++. ...|+..|.+.+.-+. +.....|..++||||.|+.+ .++.+++. ||
T Consensus 74 appkt-----------QsAlLeam~Er~Vt~~--------g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APPKT-----------QSALLEAMEERQVTID--------GQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-HHH-----------HHHHHHHHHHSEEEET--------TEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCHHH-----------HHHHHHHHHcCeEEeC--------CEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 77554 3468888887655322 11222355589999999976 68888888 88
No 322
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.11 E-value=6.7e-10 Score=125.05 Aligned_cols=231 Identities=12% Similarity=0.132 Sum_probs=133.0
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE-Eeccc--
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH-IKGPE-- 498 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~-i~~~~-- 498 (702)
...+..++++.+.+.....+..++... .++..+..-++|+||||||||++++++|+.++..+++ ++...
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~ 148 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPD 148 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc
Confidence 334567788998888777776655332 1122334458999999999999999999988765544 11110
Q ss_pred -ccccC------------cCchHHHHHHHHHHHHh----------CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHH
Q 045279 499 -LLNKY------------VGESELAVRTLFSRART----------CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 499 -l~~~~------------~g~~~~~~~~~f~~a~~----------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
....| +......++.++..+.. ....||||||++.+... . ...+..+|.
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-~-------~~~lq~lLr 220 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-D-------TRALHEILR 220 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-h-------HHHHHHHHH
Confidence 00000 11223334555555541 24569999999987632 1 234555555
Q ss_pred -hhhCCCCCCcEEEEEecC-CCC--------------ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC--C
Q 045279 556 -ELDGADKRKGVFVIGATN-RPD--------------VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID--D 617 (702)
Q Consensus 556 -~l~~~~~~~~~~vI~atn-~~~--------------~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~--~ 617 (702)
.... ...+.+|++++ .+. .+.++++...|+ .+|.|++.......+.|+..+...... .
T Consensus 221 ~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 221 WKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 2221 22333444333 121 133667643345 379999999999888887777654221 1
Q ss_pred C------CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 618 S------VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 618 ~------~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+ ..+..++ ..++||+|.+|+.....+.... ..........++..|...+..+..+
T Consensus 297 ~~~~p~~~~l~~I~------~~s~GDiRsAIn~LQf~~~~~g----~~a~~~~~~~vs~~hv~~a~~k~~~ 357 (637)
T TIGR00602 297 KIKVPKKTSVELLC------QGCSGDIRSAINSLQFSSSKSG----SLPIKKRMSTKSDAHASKSKIKGKH 357 (637)
T ss_pred ccccCCHHHHHHHH------HhCCChHHHHHHHHHHHHhcCC----ccccccccccccHHHhhhccccCCC
Confidence 1 2344444 2578999999987776655431 0011112235666777777666654
No 323
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.8e-09 Score=112.98 Aligned_cols=171 Identities=20% Similarity=0.367 Sum_probs=112.0
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
..++++||||+|+|||.|++++++.. +..+++++...+...++......-..-|..-+ .-.+++||||+.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 56889999999999999999998886 34678888887766554443333334455544 345999999999886
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEe
Q 045279 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVL 306 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~ 306 (702)
+... ...+...+..+.. .++-+|+.+-..|. .+.|.|++ ||. -++.+
T Consensus 190 k~~~---------qeefFh~FN~l~~-----------------~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I 241 (408)
T COG0593 190 KERT---------QEEFFHTFNALLE-----------------NGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEI 241 (408)
T ss_pred ChhH---------HHHHHHHHHHHHh-----------------cCCEEEEEcCCCchhhccccHHHHH--HHhceeEEee
Confidence 5322 2233343333322 23334444444455 45689999 886 45689
Q ss_pred CCCCHHHHHHHHHHhhcCcccCCcccHHH-HHhhCCCCCHHHHHHHHHHHHHH
Q 045279 307 GVPDENARVQILSVLTRNLRVEGSFDLVK-IARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 307 ~~p~~~er~~Il~~~~~~~~~~~~~~~~~-la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.+|+.+.|..|+........+....++.. ++.... -+.+++...+......
T Consensus 242 ~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~ 293 (408)
T COG0593 242 EPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAF 293 (408)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHH
Confidence 99999999999999777766665555433 443333 3556666655554433
No 324
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=9.8e-10 Score=114.88 Aligned_cols=156 Identities=15% Similarity=0.223 Sum_probs=113.4
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe----------EEEEec
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN----------FIHIKG 496 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~----------~~~i~~ 496 (702)
.|++|.|++.+++.+...+... +.+..+||+||+|+||+++|.++|..+-+. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999888866432 456789999999999999999999976221 111111
Q ss_pred ccccccC-----cCc--------------------hHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHH
Q 045279 497 PELLNKY-----VGE--------------------SELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVE 547 (702)
Q Consensus 497 ~~l~~~~-----~g~--------------------~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~ 547 (702)
+|+.--+ -|. ....+|.+...+. .....|++||++|.+. .
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~-----------~ 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN-----------E 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-----------H
Confidence 2211000 010 1224566655543 3456899999999998 8
Q ss_pred HHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 548 RLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 548 ~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
...|.||..|+... ++++|++|+.++.|-|.+.+ |+ ..+.|++++.++...++.....
T Consensus 139 ~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 139 AAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred HHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhc
Confidence 89999999999765 33566778889999999988 98 5899999999999888887643
No 325
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.5e-11 Score=127.01 Aligned_cols=128 Identities=25% Similarity=0.380 Sum_probs=82.1
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----Ce---------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV----PF--------- 186 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----~~--------- 186 (702)
.+.|.||+|++.+|+.+.-.. .-++|+||+||||||||++|+-+...+.. ..
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~ 239 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSL 239 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhh
Confidence 558999999999999998544 45688999999999999999998776521 00
Q ss_pred --------------------EEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHH
Q 045279 187 --------------------YKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVT 246 (702)
Q Consensus 187 --------------------~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 246 (702)
...+...++.++.- .. .+-+..| ...|||+||+ .++.+.+++
T Consensus 240 ~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~---p~-PGeIsLA---H~GVLFLDEl-----------pef~~~iLe 301 (490)
T COG0606 240 AGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGV---PR-PGEISLA---HNGVLFLDEL-----------PEFKRSILE 301 (490)
T ss_pred cccccccCccceeCCccCCCccchHHHHhCCCCC---CC-CCceeee---cCCEEEeecc-----------chhhHHHHH
Confidence 11111122221100 00 0001112 2249999999 466678888
Q ss_pred HHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC
Q 045279 247 QLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR 286 (702)
Q Consensus 247 ~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~ 286 (702)
.|...|+.....+... ......|.++++|++||+
T Consensus 302 ~LR~PLE~g~i~IsRa------~~~v~ypa~Fqlv~AmNp 335 (490)
T COG0606 302 ALREPLENGKIIISRA------GSKVTYPARFQLVAAMNP 335 (490)
T ss_pred HHhCccccCcEEEEEc------CCeeEEeeeeEEhhhcCC
Confidence 8988888654433222 222334677999999998
No 326
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.10 E-value=2.9e-09 Score=112.88 Aligned_cols=193 Identities=20% Similarity=0.277 Sum_probs=121.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
....++||||+|.|||+|++++++.. +..++.+...++...++.....+-..-|++-. .-.+|+||+++.+.+
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcC
Confidence 45678999999999999999999876 34677888877766655432222223344333 447999999999996
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~ 611 (702)
+. +...++...+.......+.+|+.+-..|. .+.+.+.+ ||. .++.+.+|+.+.|..|+.....
T Consensus 190 k~---------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 190 KE---------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred Ch---------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHH
Confidence 53 22333333333323334444443334454 45677877 886 5668889999999999999888
Q ss_pred cCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 612 KKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 612 ~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
..++.-+.+ +..++.+- .=+-++|..++......+..... .||.+.+.++|.....
T Consensus 259 ~~~~~i~~ev~~~la~~~---~~nvReLegaL~~l~~~a~~~~~------------~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 259 DRGIEIPDEVLEFLAKRL---DRNVRELEGALNRLDAFALFTKR------------AITIDLVKEILKDLLR 315 (408)
T ss_pred hcCCCCCHHHHHHHHHHh---hccHHHHHHHHHHHHHHHHhcCc------------cCcHHHHHHHHHHhhc
Confidence 777765444 45566321 22446666666655544443321 4666666666655543
No 327
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=8.2e-10 Score=117.69 Aligned_cols=158 Identities=18% Similarity=0.137 Sum_probs=112.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
+..+++|+|.+.+++.|.+.+.. .+.+..+||+||+|+||+++|.++|+.+-+.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 45788999999999988876543 1456679999999999999999999976211
Q ss_pred --------------------EEEEecc--cccccCcC-chHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCc
Q 045279 491 --------------------FIHIKGP--ELLNKYVG-ESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGG 543 (702)
Q Consensus 491 --------------------~~~i~~~--~l~~~~~g-~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~ 543 (702)
++.+... +-.++... -....+|.+...+. ...+.|++|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 1111100 00000000 02234566655432 3467899999999998
Q ss_pred hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 544 WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 544 ~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
....|.||..++.. ..++++|++|+.++.+.+.+.+ |+ ..+.|++|+.++...++....
T Consensus 155 ---~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 155 ---ANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ---HHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhc
Confidence 88899999999854 3456777789999989888877 88 488999999999888887653
No 328
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.09 E-value=3.6e-10 Score=121.00 Aligned_cols=194 Identities=23% Similarity=0.293 Sum_probs=126.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc-
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL- 500 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~- 500 (702)
..+|++|+|-......+.+... .......++|++|.+||||..+|+++.+.. +.||+.+||+-+-
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~ak-----------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAK-----------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHH-----------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3468888887776554444322 233567889999999999999999999865 7899999997543
Q ss_pred --------cc----CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC--------
Q 045279 501 --------NK----YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-------- 560 (702)
Q Consensus 501 --------~~----~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-------- 560 (702)
+. |.|.....-..+|+.| ..+.||+|||..+. ..++..||+.|...
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A---~gGTLFLDEIgemp-----------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELA---NGGTLFLDEIGEMP-----------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeec---cCCeEEehhhccCC-----------HHHHHHHHHHHhhceEEecCCC
Confidence 22 2333332234677777 55899999999998 88999999988752
Q ss_pred -CCCCcEEEEEecCCC--C-----ccCccccCCCccceEEEcCCCCHHHHH----HHHHHHhccC----CCCC-CCCHHH
Q 045279 561 -DKRKGVFVIGATNRP--D-----VMDRAVLRPGRFGKLLYVPLPTPDERG----LILEALARKK----PIDD-SVDLHT 623 (702)
Q Consensus 561 -~~~~~~~vI~atn~~--~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~~----~~~~-~~~~~~ 623 (702)
...-+|-||+|||+. + .+...+-- |++ ++.+..|..++|. .+...++.+. +... ...-+.
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a 452 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDA 452 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHH
Confidence 223468999999974 2 22233322 554 5666666666554 3444455532 2111 111122
Q ss_pred HhhhhcCCCCCH--HHHHHHHHHHHH
Q 045279 624 IAQSKFCENLSG--ADLAAMMNEAAM 647 (702)
Q Consensus 624 la~~~~~~~~sg--~dl~~~~~~a~~ 647 (702)
++. -+...|.| ++|+|++.+++.
T Consensus 453 ~~~-L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 453 LAL-LLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHH-HHhCCCCchHHHHHHHHHHHHh
Confidence 221 12347777 999999998885
No 329
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.09 E-value=7.9e-10 Score=101.50 Aligned_cols=128 Identities=33% Similarity=0.472 Sum_probs=82.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEechhhhcc--------------cccccHHHHHHHHHHHHhhCCce
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVP---FYKISATEVVSG--------------VSGASEENIRDLFSKAYRTAPSI 220 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~---~~~i~~~~l~~~--------------~~g~~~~~~~~~f~~a~~~~p~i 220 (702)
+.+++|+||||||||++++.+|..+... ++.+++...... ...........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999765 888887764332 11233445667888887777789
Q ss_pred EEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-CCCCCccccCCCC
Q 045279 221 VFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR-PDAVDPALRRPGR 299 (702)
Q Consensus 221 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~-~~~ld~al~r~~R 299 (702)
+||||++.+.............. ........ ......+|+++|. ....+..+.+ |
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~--~~~~~~~~--------------------~~~~~~~i~~~~~~~~~~~~~~~~--~ 137 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEE--LRLLLLLK--------------------SEKNLTVILTTNDEKDLGPALLRR--R 137 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhh--hHHHHHHH--------------------hcCCCEEEEEeCCCccCchhhhhh--c
Confidence 99999988875443211100000 00001111 1233788899986 3445555555 7
Q ss_pred cceEEEeCCC
Q 045279 300 FDREIVLGVP 309 (702)
Q Consensus 300 f~~~i~~~~p 309 (702)
++..+.+..+
T Consensus 138 ~~~~~~~~~~ 147 (148)
T smart00382 138 FDRRIVLLLI 147 (148)
T ss_pred cceEEEecCC
Confidence 7777776544
No 330
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.09 E-value=2.9e-10 Score=130.41 Aligned_cols=165 Identities=24% Similarity=0.408 Sum_probs=107.1
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-------------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET------------------- 182 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l------------------- 182 (702)
-|.+|+|++.++..+.-.+..+ ...+|||.|+||||||++|++|++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4789999999998876444221 22579999999999999999999988
Q ss_pred ----------------CCCeEEEechhhhcccccccHH--HH--------HHHHHHHHhhCCceEEechhhHhhhcchhh
Q 045279 183 ----------------GVPFYKISATEVVSGVSGASEE--NI--------RDLFSKAYRTAPSIVFIDEIDAIASKRENL 236 (702)
Q Consensus 183 ----------------~~~~~~i~~~~l~~~~~g~~~~--~~--------~~~f~~a~~~~p~il~iDEid~l~~~~~~~ 236 (702)
..+|+.+.++.......|...- .+ .+++..| ...|||||||+.+...
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~---- 141 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH---- 141 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH----
Confidence 2456665555433333333211 00 1222222 2349999999988744
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCCCC-HHHH
Q 045279 237 QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGVPD-ENAR 314 (702)
Q Consensus 237 ~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~p~-~~er 314 (702)
....|+..|+.-...+... +.....+.++++|+|+|+.+ .+.++|+. ||..++.++.+. .+++
T Consensus 142 -------~q~~Ll~~le~g~~~v~r~------g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~ 206 (633)
T TIGR02442 142 -------LVDVLLDAAAMGVNRVERE------GLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEER 206 (633)
T ss_pred -------HHHHHHHHHhcCCEEEEEC------CceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHH
Confidence 3445777776432111111 11122345699999999753 68899999 999888888775 5777
Q ss_pred HHHHHHh
Q 045279 315 VQILSVL 321 (702)
Q Consensus 315 ~~Il~~~ 321 (702)
.+++...
T Consensus 207 ~~il~~~ 213 (633)
T TIGR02442 207 VEIIRRR 213 (633)
T ss_pred HHHHHHH
Confidence 8887653
No 331
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.09 E-value=2.9e-11 Score=116.12 Aligned_cols=142 Identities=21% Similarity=0.362 Sum_probs=68.0
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC----eEEE---E------
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA----NFIH---I------ 494 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~----~~~~---i------ 494 (702)
|.+|.|++.+|..+.-+.. | +.|+|++||||||||++|+.+...+.- ..++ +
T Consensus 2 f~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 6789999999987754321 2 368999999999999999999986511 0000 0
Q ss_pred -------ecccccccCcCchHHHHHHHHHH--------HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhC
Q 045279 495 -------KGPELLNKYVGESELAVRTLFSR--------ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDG 559 (702)
Q Consensus 495 -------~~~~l~~~~~g~~~~~~~~~f~~--------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 559 (702)
...-+......-+. ..++.- .-....+|||+||+-.+. +.+++.|+.-|+.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~---~~liGgg~~~~PGeislAh~GVLflDE~~ef~-----------~~vld~Lr~ple~ 132 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASE---AALIGGGRPPRPGEISLAHRGVLFLDELNEFD-----------RSVLDALRQPLED 132 (206)
T ss_dssp S---EEEE---EEEE-TT--H---HHHHEEGGGEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCH---HHHhCCCcCCCcCHHHHhcCCEEEechhhhcC-----------HHHHHHHHHHHHC
Confidence 00000000000111 112210 111245899999999887 8999999998875
Q ss_pred CC-----------CCCcEEEEEecCC-----------------------CCccCccccCCCccceEEEcCCCCHH
Q 045279 560 AD-----------KRKGVFVIGATNR-----------------------PDVMDRAVLRPGRFGKLLYVPLPTPD 600 (702)
Q Consensus 560 ~~-----------~~~~~~vI~atn~-----------------------~~~ld~a~~r~gRf~~~i~~~~p~~~ 600 (702)
.. -..++++|+|+|. ...+...++. |||..+.++..+.+
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred CeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 21 2246788999983 1245555555 88877777766554
No 332
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.08 E-value=5e-10 Score=127.09 Aligned_cols=137 Identities=18% Similarity=0.241 Sum_probs=85.2
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-------------------CCCcEEEEEecCCC--CccCc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------------------KRKGVFVIGATNRP--DVMDR 580 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~~~vI~atn~~--~~ld~ 580 (702)
..++|||||++.+. ...+..|+..|.... -..++.||+++|.. ..+++
T Consensus 217 ngGtL~Ldei~~L~-----------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~ 285 (608)
T TIGR00764 217 HKGVLYIDEIKTMP-----------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHP 285 (608)
T ss_pred CCCEEEEEChHhCC-----------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCH
Confidence 34688888888877 667777777764321 12367889999874 57999
Q ss_pred cccCCCccc---eEEEcCC--C-CHHHHHHHHHHHhc---cCCCCCCCC---HHHHhhhh--cC---CC--CCHHHHHHH
Q 045279 581 AVLRPGRFG---KLLYVPL--P-TPDERGLILEALAR---KKPIDDSVD---LHTIAQSK--FC---EN--LSGADLAAM 641 (702)
Q Consensus 581 a~~r~gRf~---~~i~~~~--p-~~~~r~~il~~~~~---~~~~~~~~~---~~~la~~~--~~---~~--~sg~dl~~~ 641 (702)
+|+. ||+ ..++|+. | +.+.+..+.+...+ +.+.....+ ++.+.+.. .. .. .+.++|.++
T Consensus 286 ~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~l 363 (608)
T TIGR00764 286 ALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGL 363 (608)
T ss_pred HHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 9998 998 6676653 3 45666666555433 221111222 23333110 00 11 345899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 642 MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 642 ~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
|++|...|..+. ...|+.+|+++|++....
T Consensus 364 lR~A~~iA~~~~-----------~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 364 VRAAGDIAKSSG-----------KVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred HHHHHHHHHhcC-----------CceecHHHHHHHHHHHHH
Confidence 999865443331 137999999999987754
No 333
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.07 E-value=7e-10 Score=117.06 Aligned_cols=173 Identities=19% Similarity=0.269 Sum_probs=106.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC-----cCchH-------HHHHHHHHHHHhCCCeE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY-----VGESE-------LAVRTLFSRARTCSPCI 525 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-----~g~~~-------~~~~~~f~~a~~~~~~v 525 (702)
....++||+|++||||+++|+++.... +.+|+.++|+.+.... .|... .....+|+.| ..++
T Consensus 20 ~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGt 96 (329)
T TIGR02974 20 PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGT 96 (329)
T ss_pred CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCE
Confidence 345679999999999999999998765 4799999998653211 11100 0011224433 5689
Q ss_pred EEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCccc
Q 045279 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRFG 589 (702)
Q Consensus 526 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf~ 589 (702)
||||||+.+. ..++..|+..++... ...++.||++||.. ..+.+.+.. |+.
T Consensus 97 L~Ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 97 LFLDELATAS-----------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred EEeCChHhCC-----------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 9999999999 888888888886532 12457888888753 234555655 774
Q ss_pred -eEEEcCCCC--HHHHHHHHHHHhccC----CCCCCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHHH
Q 045279 590 -KLLYVPLPT--PDERGLILEALARKK----PIDDSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 590 -~~i~~~~p~--~~~r~~il~~~~~~~----~~~~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~a 649 (702)
..|.+|+.. .++...++..++.+. +......+..-+...+ ...|.| ++|++++..|+..+
T Consensus 164 ~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 345555554 234455566655432 2111012222221122 236666 89999999888654
No 334
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.07 E-value=6.2e-10 Score=119.96 Aligned_cols=161 Identities=20% Similarity=0.224 Sum_probs=96.0
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechh-hhccccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--PFYKISATE-VVSGVSG 200 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~-l~~~~~g 200 (702)
+.|+|.+++++.+...+ ..+.+|||+||||||||++|++|+...+. +|..+.+.. ......|
T Consensus 20 ~~i~gre~vI~lll~aa---------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG 84 (498)
T PRK13531 20 KGLYERSHAIRLCLLAA---------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 84 (498)
T ss_pred hhccCcHHHHHHHHHHH---------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcC
Confidence 45789999988877544 35678999999999999999999997743 444443331 1222223
Q ss_pred cc-HHHH--HHHHHHHHhh---CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 201 AS-EENI--RDLFSKAYRT---APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 201 ~~-~~~~--~~~f~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.. -... .+-|.....+ ...++|+|||+.+.+. ....|+..|++.... .++ .....
T Consensus 85 ~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~-----------~QsaLLeam~Er~~t--~g~------~~~~l 145 (498)
T PRK13531 85 PLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA-----------ILNTLLTAINERRFR--NGA------HEEKI 145 (498)
T ss_pred cHHHhhhhhcCchhhhcCCccccccEEeecccccCCHH-----------HHHHHHHHHHhCeEe--cCC------eEEeC
Confidence 21 0000 1122211111 1239999999766543 445688888764421 111 11112
Q ss_pred CCeEEEEEecCCCC---CCCccccCCCCcceEEEeCCCC-HHHHHHHHHHh
Q 045279 275 PGYVLVIGATNRPD---AVDPALRRPGRFDREIVLGVPD-ENARVQILSVL 321 (702)
Q Consensus 275 ~~~v~vI~atn~~~---~ld~al~r~~Rf~~~i~~~~p~-~~er~~Il~~~ 321 (702)
+..++|+ |||+.. ...+++.. ||...+.+++|+ .++..+|+...
T Consensus 146 p~rfiv~-ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 146 PMRLLVT-ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCcEEEE-ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 3334444 447532 23357888 998889999997 46667788653
No 335
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.07 E-value=7.9e-10 Score=118.77 Aligned_cols=196 Identities=21% Similarity=0.314 Sum_probs=129.2
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc-
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK- 502 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~- 502 (702)
.+..++|.....+.+.+.+... .....++|++|++||||..+|++|.... +.||+.+||..+-..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4567888888888777766543 2456789999999999999999999866 569999999765322
Q ss_pred ----CcC----chHHHH---HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------C
Q 045279 503 ----YVG----ESELAV---RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------K 562 (702)
Q Consensus 503 ----~~g----~~~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~ 562 (702)
..| ...... ...|+.| ..+.||||||..+. .+++..||..+.... .
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mp-----------l~~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMP-----------LELQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCC-----------HHHHHHHHHHHHcCeeEecCCCccc
Confidence 112 111111 2345555 66999999999999 899999999887521 2
Q ss_pred CCcEEEEEecCCC--C-----ccCccccCCCccceEEEcCCCCHHHHH----HHHHHHhcc----CCCCCCCCHHHHhhh
Q 045279 563 RKGVFVIGATNRP--D-----VMDRAVLRPGRFGKLLYVPLPTPDERG----LILEALARK----KPIDDSVDLHTIAQS 627 (702)
Q Consensus 563 ~~~~~vI~atn~~--~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~----~~~~~~~~~~~la~~ 627 (702)
.-+|-||+|||+. + .+-+.+.- |+. ++.+..|...+|. -++.+++++ .+. ....+..-+..
T Consensus 274 ~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~-~~~~~s~~a~~ 349 (464)
T COG2204 274 KVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR-PPKGFSPEALA 349 (464)
T ss_pred ceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCC-CCCCCCHHHHH
Confidence 2368899999874 1 34444444 664 6667777766654 444555543 221 12222222222
Q ss_pred hc-CCCCCH--HHHHHHHHHHHHHHHH
Q 045279 628 KF-CENLSG--ADLAAMMNEAAMAALE 651 (702)
Q Consensus 628 ~~-~~~~sg--~dl~~~~~~a~~~a~~ 651 (702)
.+ ...|.| ++|+|+|..++..+-.
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 32 347877 9999999999876543
No 336
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.06 E-value=4.6e-10 Score=118.63 Aligned_cols=200 Identities=17% Similarity=0.196 Sum_probs=120.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG- 197 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~- 197 (702)
-+++++|.+...+++.+.+... .....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~-----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~ 72 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL-----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHH
Confidence 3778999999999998888442 3456789999999999999999997654 469999999986422
Q ss_pred ----ccccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 198 ----VSGAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 198 ----~~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
+.|.. .....+.|+.+. ..+||||||+.|....+ ..|+..++.... ...++.
T Consensus 73 ~~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~-~~~g~~-- 135 (326)
T PRK11608 73 LDSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPMLVQ-----------EKLLRVIEYGEL-ERVGGS-- 135 (326)
T ss_pred HHHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCHHHH-----------HHHHHHHhcCcE-EeCCCC--
Confidence 11111 001123444443 34999999999885433 345665553211 011111
Q ss_pred CCCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----ccC--C
Q 045279 267 KSDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----RVE--G 329 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~~~--~ 329 (702)
...+.++.||++|+.. ..+.+.|.. || ..+.+..|+..+|.+ ++..++... ... .
T Consensus 136 -----~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 207 (326)
T PRK11608 136 -----QPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFP 207 (326)
T ss_pred -----ceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 1123358999998763 245566666 77 346677777777654 334443222 111 1
Q ss_pred ccc---HHHHHhh-CCCCCHHHHHHHHHHHHHH
Q 045279 330 SFD---LVKIARS-TPGFVGADLAALANKAGNL 358 (702)
Q Consensus 330 ~~~---~~~la~~-t~g~~~~dl~~l~~~a~~~ 358 (702)
... +..+... .+| +.++|++++..++..
T Consensus 208 ~~s~~al~~L~~y~WPG-NvrEL~~vl~~a~~~ 239 (326)
T PRK11608 208 GFTERARETLLNYRWPG-NIRELKNVVERSVYR 239 (326)
T ss_pred CCCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHh
Confidence 111 2233333 333 678888888777543
No 337
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.06 E-value=1.4e-09 Score=105.83 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=88.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC--------eEEEechhhhcc---------cc--cccHHHHHHHHHHHHh--
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVP--------FYKISATEVVSG---------VS--GASEENIRDLFSKAYR-- 215 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~--------~~~i~~~~l~~~---------~~--g~~~~~~~~~f~~a~~-- 215 (702)
.+..+||+||+|+|||++|+.+++.+... ....+|..+..+ .. .-....++.+.+.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45679999999999999999999997432 000111111100 00 0112345555555432
Q ss_pred --hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCcc
Q 045279 216 --TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPA 293 (702)
Q Consensus 216 --~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~a 293 (702)
+...|++|||+|.+... ..+.|+..+++. +.+..+|.+|+.+..+.++
T Consensus 93 ~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~-------------------~~~~~~il~~~~~~~l~~~ 142 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNEA-----------AANALLKTLEEP-------------------PPNTLFILITPSPEKLLPT 142 (188)
T ss_pred ccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCC-------------------CCCeEEEEEECChHhChHH
Confidence 34569999999988643 234577777652 2346677777777899999
Q ss_pred ccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 294 LRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 294 l~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
+++ |+ ..+.|.+|+.++...++...
T Consensus 143 i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 143 IRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred HHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 999 88 68999999999998888765
No 338
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.06 E-value=6.1e-10 Score=125.04 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=122.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
....+|++++|.+...+++.+.+... .....+|||+|++||||+++|+++.... +.+|+.++|+.+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~ 266 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASI 266 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccC
Confidence 34568999999999888888777332 2345679999999999999999986554 468999999987
Q ss_pred hcc-----cccccH-------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCC
Q 045279 195 VSG-----VSGASE-------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPG 262 (702)
Q Consensus 195 ~~~-----~~g~~~-------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~ 262 (702)
... ..|... ....++|+.|. ..+||||||+.|....+ ..|+..++... +...|
T Consensus 267 ~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~~Q-----------~~Ll~~l~~~~-~~~~g 331 (520)
T PRK10820 267 PDDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPRMQ-----------AKLLRFLNDGT-FRRVG 331 (520)
T ss_pred CHHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHHHH-----------HHHHHHHhcCC-cccCC
Confidence 532 111110 11134566553 34999999999875443 34555554311 11111
Q ss_pred CCCCCCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhc----Cccc
Q 045279 263 DQKSKSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTR----NLRV 327 (702)
Q Consensus 263 ~~~~~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~----~~~~ 327 (702)
+. ...+.+++||++|+..- .+.+.|.. |+ ..+.+..|+..+|.+ ++..++. +...
T Consensus 332 ~~-------~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~ 401 (520)
T PRK10820 332 ED-------HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQGV 401 (520)
T ss_pred CC-------cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCC
Confidence 11 11234589999887632 24455555 66 447788888877763 2233332 2221
Q ss_pred C---Ccc-cHHHHHhh-CCCCCHHHHHHHHHHHHHH
Q 045279 328 E---GSF-DLVKIARS-TPGFVGADLAALANKAGNL 358 (702)
Q Consensus 328 ~---~~~-~~~~la~~-t~g~~~~dl~~l~~~a~~~ 358 (702)
. -.. .+..+... ++| +.++|++++.+|+..
T Consensus 402 ~~~~ls~~a~~~L~~y~WPG-NvreL~nvl~~a~~~ 436 (520)
T PRK10820 402 PRPKLAADLNTVLTRYGWPG-NVRQLKNAIYRALTQ 436 (520)
T ss_pred CCCCcCHHHHHHHhcCCCCC-HHHHHHHHHHHHHHh
Confidence 1 111 12333333 333 678888888777653
No 339
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.05 E-value=1.9e-09 Score=114.72 Aligned_cols=150 Identities=25% Similarity=0.379 Sum_probs=105.1
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC--------------------
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-------------------- 183 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-------------------- 183 (702)
++++|.+.+...+...+...- +-++.+||+||||+|||++|.++|+.+.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~-----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG-----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC-----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 357788888888877663211 2223599999999999999999999986
Q ss_pred ----CCeEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhh
Q 045279 184 ----VPFYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDES 255 (702)
Q Consensus 184 ----~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~ 255 (702)
..++.+++++..... -....++.+-+.... +...|++|||+|.|..+ ..+.++..+++
T Consensus 70 ~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-----------A~nallk~lEe- 135 (325)
T COG0470 70 AGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-----------AANALLKTLEE- 135 (325)
T ss_pred hcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHhcc-
Confidence 467777777653321 123344444443322 23569999999998863 34457777775
Q ss_pred ccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 256 HRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
.+.+..+|.+||.+..+-|.+++ |+ ..+.|.+|+.........
T Consensus 136 ------------------p~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 136 ------------------PPKNTRFILITNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred ------------------CCCCeEEEEEcCChhhccchhhh--cc-eeeecCCchHHHHHHHhh
Confidence 35568999999999999999999 98 678888866555544443
No 340
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.05 E-value=6.2e-10 Score=124.99 Aligned_cols=202 Identities=22% Similarity=0.239 Sum_probs=124.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG- 197 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~- 197 (702)
.+.+|+|....++++.+.+.. -.....+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~-----------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV-----------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH-----------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 578899999999999888843 23456789999999999999999997764 579999999987532
Q ss_pred ----ccccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 198 ----VSGAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 198 ----~~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
..|.. .....+.|+.+. +.+||||||+.|....+ ..|+..++... +...|+.
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~~~Q-----------~~Ll~~l~~~~-~~~~g~~-- 316 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPLALQ-----------AKLLRVLQYGE-IQRVGSD-- 316 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCHHHH-----------HHHHHHHhcCC-EeeCCCC--
Confidence 11110 001123455553 34999999999885433 34666655321 1111111
Q ss_pred CCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCcc-------cC
Q 045279 267 KSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLR-------VE 328 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~-------~~ 328 (702)
...+.++.+|++|+..- .+.+.|.. |+ ..+.+..|+..+|.+ ++..++.... ..
T Consensus 317 -----~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~ 388 (509)
T PRK05022 317 -----RSLRVDVRVIAATNRDLREEVRAGRFRADLYH--RL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLR 388 (509)
T ss_pred -----cceecceEEEEecCCCHHHHHHcCCccHHHHh--cc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 11234589999998732 34444544 56 457788888877754 3333333221 11
Q ss_pred Cccc-HHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 329 GSFD-LVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ~~~~-~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
...+ +..|....=-.+.++|++++..|+..+
T Consensus 389 ~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 389 LSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 1111 333333322237889999998887654
No 341
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=1.5e-09 Score=114.09 Aligned_cols=130 Identities=21% Similarity=0.270 Sum_probs=98.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC------------------------eEEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA------------------------NFIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+|||++|+.+|..+.+ .++.+...+- ++ .-+-..+|.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 45667999999999999999999997743 1222222110 00 113456777766
Q ss_pred HHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+.. ....|++||++|.+. ....|.||..|+... .++++|++|+.++.+.|.+++ |+. .+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~-----------~~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc~-~~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN-----------RNAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RCQ-QQ 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC-----------HHHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hce-ee
Confidence 5542 456799999999999 899999999999743 577888999999999999988 995 69
Q ss_pred EcCCCCHHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEAL 609 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~ 609 (702)
.|++|+.++....+...
T Consensus 161 ~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 161 ACPLPSNEESLQWLQQA 177 (328)
T ss_pred eCCCcCHHHHHHHHHHh
Confidence 99999998887777654
No 342
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.04 E-value=1.9e-09 Score=125.80 Aligned_cols=202 Identities=21% Similarity=0.287 Sum_probs=124.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~ 196 (702)
..+|++++|....++.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~ 440 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPA 440 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCCh
Confidence 357899999999999988777432 2345689999999999999999997754 57999999987643
Q ss_pred c-----ccc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 197 G-----VSG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 197 ~-----~~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
. ..| .... ..+.|+.+. +++||||||+.+....+ ..|+..++... +...++
T Consensus 441 ~~~~~~lfg~~~~~~~g~~~~-~~g~le~a~---~GtL~Ldei~~L~~~~Q-----------~~L~~~l~~~~-~~~~g~ 504 (686)
T PRK15429 441 GLLESDLFGHERGAFTGASAQ-RIGRFELAD---KSSLFLDEVGDMPLELQ-----------PKLLRVLQEQE-FERLGS 504 (686)
T ss_pred hHhhhhhcCcccccccccccc-hhhHHHhcC---CCeEEEechhhCCHHHH-----------HHHHHHHHhCC-EEeCCC
Confidence 2 111 1111 234455543 35999999998875433 34666665421 111111
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----ccC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----RVE 328 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~~~ 328 (702)
. ...+.++++|++|+..- .+.+.+.. |+ ..+.+..|+..+|.+ ++..++.+. ...
T Consensus 505 ~-------~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~ 574 (686)
T PRK15429 505 N-------KIIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRN 574 (686)
T ss_pred C-------CcccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCC
Confidence 1 11234689999998742 22233333 55 457888888888765 334443322 111
Q ss_pred ---Cc-ccHHHHHhh-CCCCCHHHHHHHHHHHHHHH
Q 045279 329 ---GS-FDLVKIARS-TPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ---~~-~~~~~la~~-t~g~~~~dl~~l~~~a~~~a 359 (702)
.. ..+..+... ++| +.++|++++.+++..+
T Consensus 575 ~~~~s~~al~~L~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 575 IDSIPAETLRTLSNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred CCCcCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHhC
Confidence 11 113333333 344 7789999988887543
No 343
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.8e-09 Score=114.30 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=107.3
Q ss_pred CcccccC-HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEech
Q 045279 122 RFQDLGG-MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISAT 192 (702)
Q Consensus 122 ~~~~i~G-~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~~ 192 (702)
.|+.|+| ++.+++.+...+.. -+.++.+||+||+|+|||++|+.+|+.+.+.- ..-+|.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 5889998 88899999877621 23456689999999999999999999874321 000011
Q ss_pred hhhcc---------cccc--cHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 193 EVVSG---------VSGA--SEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 193 ~l~~~---------~~g~--~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
.+..+ ..|. .-..++.+.+.+. .+...|++|||+|.+... ..+.|+..+++
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~-----------a~NaLLK~LEE--- 136 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS-----------AANSLLKFLEE--- 136 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-----------HHHHHHHHhcC---
Confidence 11100 0011 1234555555443 234469999999888643 34568888886
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
.|+++++|.+|+.+..+.|.+++ |+ .++.|..|+.++..+++..
T Consensus 137 ----------------Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 137 ----------------PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ----------------CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 35568888899899999999999 98 7799999999998777753
No 344
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=2.9e-09 Score=111.92 Aligned_cols=150 Identities=18% Similarity=0.295 Sum_probs=102.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC------------------------eEEEechhhhcccccccHHHHHHHHHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVP------------------------FYKISATEVVSGVSGASEENIRDLFSK 212 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~~ 212 (702)
.++.+||+||+|+|||++|+.+|+.+.+. ++.+....- ...-.-..++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKTIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCCCCHHHHHHHHHH
Confidence 45679999999999999999999998542 122211100 001123456666555
Q ss_pred HHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC
Q 045279 213 AYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD 288 (702)
Q Consensus 213 a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~ 288 (702)
+.. +...|++||++|.|... ..+.|++.+++ .|+++++|.+|+.++
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~-----------aaNaLLK~LEE-------------------Pp~~~~fiL~t~~~~ 147 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRN-----------AANALLKSLEE-------------------PSGDTVLLLISHQPS 147 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHH-----------HHHHHHHHHhC-------------------CCCCeEEEEEECChh
Confidence 542 34569999999988753 34568888886 356789999999999
Q ss_pred CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCH
Q 045279 289 AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVG 345 (702)
Q Consensus 289 ~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~ 345 (702)
.+.|.+++ |+ ..+.|++|+.++..+.+...... ........++....|-.+
T Consensus 148 ~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 148 RLLPTIKS--RC-QQQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGSPL 198 (328)
T ss_pred hCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCCHH
Confidence 99999999 99 66999999999988888654321 112233445556665433
No 345
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.02 E-value=2.5e-09 Score=118.18 Aligned_cols=143 Identities=22% Similarity=0.338 Sum_probs=90.7
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC----CeEEE---------
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG----ANFIH--------- 493 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~----~~~~~--------- 493 (702)
.|.++.|+..+++.+.- ......+++|+||||||||++++.++..+. ..++.
T Consensus 190 d~~dv~Gq~~~~~al~~---------------aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEI---------------AAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CHHHhcCcHHHHhhhhh---------------hccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 56778888777654432 123456799999999999999999997541 11111
Q ss_pred ---------------EecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 494 ---------------IKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 494 ---------------i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
...+......+|......-..+..| ..++|||||++.+. ..++..|++.|+
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA---~~GvLfLDEi~e~~-----------~~~~~~L~~~LE 320 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLA---HNGVLFLDELPEFK-----------RSVLDALREPIE 320 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhcc---CCCeEecCChhhCC-----------HHHHHHHHHHHH
Confidence 1111100001111100011123333 45899999999988 788888888886
Q ss_pred CCC-----------CCCcEEEEEecCCC------C-----------------ccCccccCCCccceEEEcCCCCHH
Q 045279 559 GAD-----------KRKGVFVIGATNRP------D-----------------VMDRAVLRPGRFGKLLYVPLPTPD 600 (702)
Q Consensus 559 ~~~-----------~~~~~~vI~atn~~------~-----------------~ld~a~~r~gRf~~~i~~~~p~~~ 600 (702)
... ...++.+|+++|.. + .+...++. |||..+.++.++.+
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 532 12468899999852 1 47777777 99999999987654
No 346
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.02 E-value=5.7e-09 Score=114.26 Aligned_cols=206 Identities=21% Similarity=0.266 Sum_probs=137.5
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEeccccccc----------CcCchHH------HHHHHHHHH
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKGPELLNK----------YVGESEL------AVRTLFSRA 518 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~l~~~----------~~g~~~~------~~~~~f~~a 518 (702)
.+.+.|-||||||.++..+-+.+ .+.+++|++-.+.+. +.|+... .+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 57888999999999999888755 568899998776553 2232111 122222211
Q ss_pred -HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcccc-CC-Cccc-eEEEc
Q 045279 519 -RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVL-RP-GRFG-KLLYV 594 (702)
Q Consensus 519 -~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~-r~-gRf~-~~i~~ 594 (702)
....++||+|||+|.|..+. +.++..++..- .....+++||+..|.++....-+. ++ +|++ ..|.|
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~--------QdVlYn~fdWp--t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F 573 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS--------QDVLYNIFDWP--TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICF 573 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc--------HHHHHHHhcCC--cCCCCceEEEEecccccCHHHHhccchhhhccceeeec
Confidence 13468999999999999654 55555554322 235678899999998876655554 21 2655 67899
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCH--HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHH
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSG--ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTH 672 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg--~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d 672 (702)
.+++-++..+|+...++.........++.+|++ ....|| +..-.+|++|+..|-.+.... .......|+..|
T Consensus 574 ~pYth~qLq~Ii~~RL~~~~~f~~~aielvark--VAavSGDaRraldic~RA~Eia~~~~~~~----k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 574 QPYTHEQLQEIISARLKGLDAFENKAIELVARK--VAAVSGDARRALDICRRAAEIAEERNVKG----KLAVSQLVGILH 647 (767)
T ss_pred CCCCHHHHHHHHHHhhcchhhcchhHHHHHHHH--HHhccccHHHHHHHHHHHHHHhhhhcccc----cccccceeehHH
Confidence 999999999999999988744433344444432 223343 444468889998888776521 222334799999
Q ss_pred HHHHHhhcCCCCCH
Q 045279 673 FEQALSKISPSVSE 686 (702)
Q Consensus 673 ~~~al~~~~~~~~~ 686 (702)
+.+|++.+..+.-.
T Consensus 648 v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 648 VMEAINEMLASPYI 661 (767)
T ss_pred HHHHHHHHhhhhHH
Confidence 99999988654433
No 347
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.02 E-value=1e-08 Score=105.98 Aligned_cols=188 Identities=16% Similarity=0.223 Sum_probs=110.4
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCC-eEEE--E-ec----cccc----cc----CcCch-HHHHHHHH----HHHHhCCC
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGA-NFIH--I-KG----PELL----NK----YVGES-ELAVRTLF----SRARTCSP 523 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~-~~~~--i-~~----~~l~----~~----~~g~~-~~~~~~~f----~~a~~~~~ 523 (702)
.++|+||+|+|||++++.++..+.. .+.. + +. .++. .. ..+.. ....+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 4789999999999999999998752 2221 1 11 1111 00 11111 11122222 22334567
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-C-CCCcEEEEEecCCCC---ccC-c---cccCCCccceEEEc
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-D-KRKGVFVIGATNRPD---VMD-R---AVLRPGRFGKLLYV 594 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-~-~~~~~~vI~atn~~~---~ld-~---a~~r~gRf~~~i~~ 594 (702)
.+|+|||++.+. ...+..+. .+-.. . ....+.|+++ ..++ .+. + .+.+ |+...+.+
T Consensus 125 ~vliiDe~~~l~-----------~~~~~~l~-~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLT-----------PELLEELR-MLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCC-----------HHHHHHHH-HHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 899999999886 33333322 22211 1 1222333333 3332 221 1 2334 78888999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCC-----CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcccc
Q 045279 595 PLPTPDERGLILEALARKKPIDD-----SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIK 669 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~-----~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~ 669 (702)
++++.++...++...+...+... +..++.+. ..+.|+. +.|..+|..+...|..+.. ..|+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~--~~s~G~p-~~i~~l~~~~~~~a~~~~~-----------~~i~ 255 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIH--RFSRGIP-RLINILCDRLLLSAFLEEK-----------REIG 255 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHH--HHcCCcc-cHHHHHHHHHHHHHHHcCC-----------CCCC
Confidence 99999999999998887544321 23345555 4566665 4488888888877776543 2799
Q ss_pred HHHHHHHHhhcC
Q 045279 670 LTHFEQALSKIS 681 (702)
Q Consensus 670 ~~d~~~al~~~~ 681 (702)
.++++.++..+.
T Consensus 256 ~~~v~~~~~~~~ 267 (269)
T TIGR03015 256 GEEVREVIAEID 267 (269)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 348
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.02 E-value=9.6e-10 Score=124.61 Aligned_cols=204 Identities=18% Similarity=0.229 Sum_probs=121.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~ 196 (702)
..++++|+|.+..++++.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~-----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVV-----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHH-----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 458999999999999999887442 3456779999999999999999998775 57999999987643
Q ss_pred cc-----ccccH-------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCC
Q 045279 197 GV-----SGASE-------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQ 264 (702)
Q Consensus 197 ~~-----~g~~~-------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~ 264 (702)
.. .|... ....+.|+.+ .+.+||||||+.|....+ ..|+..++.... ...++.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~~Q-----------~~Ll~~l~~~~~-~~~~~~ 325 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPAFQ-----------AKLLRVLQEGEF-ERVGGN 325 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHHHH-----------HHHHHHHhcCcE-EECCCC
Confidence 21 11100 0001223333 345999999999875433 346666654211 111111
Q ss_pred CCCCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHH----HHHHHHhhcCcc------c
Q 045279 265 KSKSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENAR----VQILSVLTRNLR------V 327 (702)
Q Consensus 265 ~~~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er----~~Il~~~~~~~~------~ 327 (702)
...+.++.+|++|+..- .+.+.|.. |+ ..+.+..|+..+| ..++..++.... .
T Consensus 326 -------~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~ 395 (534)
T TIGR01817 326 -------RTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RI-NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPL 395 (534)
T ss_pred -------ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCC
Confidence 01123588999987631 23344444 55 3456666666554 334455544321 1
Q ss_pred CCcc-cHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 328 EGSF-DLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 328 ~~~~-~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
.... .+..+....=-.+.++|++++..++..+
T Consensus 396 ~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 396 TITPSAIRVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred CCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 1111 1333444332237789998888876543
No 349
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.01 E-value=2e-09 Score=113.69 Aligned_cols=193 Identities=19% Similarity=0.227 Sum_probs=119.3
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK-- 502 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~-- 502 (702)
+++++|.....+.+.+.+.... ....+++|+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3556777666665555444431 345679999999999999999998765 469999999876321
Q ss_pred ---CcCchH-------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CC
Q 045279 503 ---YVGESE-------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KR 563 (702)
Q Consensus 503 ---~~g~~~-------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~ 563 (702)
+.|... ......|..| ..++|||||++.+. ..++..|+..++... ..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MLVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 111110 0011233333 56899999999999 788888888876522 11
Q ss_pred CcEEEEEecCCC-------CccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhccC----CCC--CCCCHHHHhhh
Q 045279 564 KGVFVIGATNRP-------DVMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARKK----PID--DSVDLHTIAQS 627 (702)
Q Consensus 564 ~~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~~----~~~--~~~~~~~la~~ 627 (702)
.++.||++|+.. ..+.+.+.. ||. ..|.+|+... ++...++..++.+. +.. ....-+.+..
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~- 216 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARET- 216 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHH-
Confidence 357888888763 245566666 773 4566666553 34555666665432 111 1122222221
Q ss_pred hcCCCCCH--HHHHHHHHHHHHH
Q 045279 628 KFCENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 628 ~~~~~~sg--~dl~~~~~~a~~~ 648 (702)
-....|.| ++|+++++.|+..
T Consensus 217 L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 217 LLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHhCCCCcHHHHHHHHHHHHHHh
Confidence 11236766 8999999998864
No 350
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.01 E-value=1e-09 Score=127.25 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=121.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS 196 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~ 196 (702)
..+|++|+|.+...+++.+.+.. ......+|||+|++||||+++|++|.+.. +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~-----------~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQ-----------AAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred cccccceEECCHHHHHHHHHHHH-----------HhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 45799999999999988877743 23455679999999999999999998765 47999999987743
Q ss_pred c-----ccccc----HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 197 G-----VSGAS----EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 197 ~-----~~g~~----~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
. ..|.. .....+.|+.| .+.+||||||+.|....+ ..|+..++.... ...++.
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~~Q-----------~~Ll~~l~~~~~-~~~~~~--- 451 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPELQ-----------SALLQVLKTGVI-TRLDSR--- 451 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHHHH-----------HHHHHHHhcCcE-EeCCCC---
Confidence 2 22211 11111234444 345999999998885443 346666653211 111111
Q ss_pred CCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCc----c--cCCc
Q 045279 268 SDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNL----R--VEGS 330 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~----~--~~~~ 330 (702)
...+-++.+|+||+..- .+.+.|.- |+ ..+.+..|+..+|.+ ++..++..+ . ..-.
T Consensus 452 ----~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s 524 (638)
T PRK11388 452 ----RLIPVDVRVIATTTADLAMLVEQNRFSRQLYY--AL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKID 524 (638)
T ss_pred ----ceEEeeEEEEEeccCCHHHHHhcCCChHHHhh--hh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcC
Confidence 11123589999998731 23333433 55 457888888888753 333333322 1 1111
Q ss_pred c-cHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 331 F-DLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 331 ~-~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
. .+..|....=-.+.++|.+++..++.
T Consensus 525 ~~a~~~L~~y~WPGNvreL~~~l~~~~~ 552 (638)
T PRK11388 525 DDALARLVSYRWPGNDFELRSVIENLAL 552 (638)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 1 13334333322367888888887654
No 351
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.01 E-value=2e-09 Score=112.35 Aligned_cols=169 Identities=25% Similarity=0.377 Sum_probs=114.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec--------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA-------- 191 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~-------- 191 (702)
.+.|.-++|++..|..|....+. +.-.++|+-|+.||||||++|+|+..|.-.-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 45789999999999887644322 233689999999999999999999988422111111
Q ss_pred -----hh-------------------hhcccccccHHHHH------------------HHHHHHHhhCCceEEechhhHh
Q 045279 192 -----TE-------------------VVSGVSGASEENIR------------------DLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 192 -----~~-------------------l~~~~~g~~~~~~~------------------~~f~~a~~~~p~il~iDEid~l 229 (702)
.. ++..-.|.++.++- +++..|. ..||++||++.|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An---RGIlYvDEvnlL 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN---RGILYVDEVNLL 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc---CCEEEEeccccc
Confidence 00 11111233333211 1222332 249999999777
Q ss_pred hhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCC
Q 045279 230 ASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGV 308 (702)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~ 308 (702)
. ..+++.||..+.+-.+.+ ...+++..+|-++++|||+|+.+ +|-|.|+. ||...+.+..
T Consensus 157 ~-----------d~lvd~LLd~aaeG~n~v------ereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~ 217 (423)
T COG1239 157 D-----------DHLVDALLDVAAEGVNDV------EREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHY 217 (423)
T ss_pred c-----------HHHHHHHHHHHHhCCcee------eeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccC
Confidence 5 356677888777532222 23345666788899999999965 89999999 9999998887
Q ss_pred C-CHHHHHHHHHHhhc
Q 045279 309 P-DENARVQILSVLTR 323 (702)
Q Consensus 309 p-~~~er~~Il~~~~~ 323 (702)
| +.++|.+|......
T Consensus 218 ~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 218 PLDLEERVEIIRRRLA 233 (423)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7 57899999876554
No 352
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=1.5e-09 Score=114.88 Aligned_cols=149 Identities=17% Similarity=0.187 Sum_probs=106.1
Q ss_pred cccccCC-cccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe---------------
Q 045279 427 KWEDVGG-LDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN--------------- 490 (702)
Q Consensus 427 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~--------------- 490 (702)
.|+.|.| ++.+++.+...+.. .+.+..+||+||+|+||+++|+.+|+.+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 3666766 77777777665422 2456678999999999999999999876321
Q ss_pred ---------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhh
Q 045279 491 ---------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIEL 557 (702)
Q Consensus 491 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 557 (702)
+..+... +.. -+-..++.+.+.+. .....|++|||+|.+. ....|.||..|
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~-----------~~a~NaLLK~L 134 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT-----------ASAANSLLKFL 134 (329)
T ss_pred HHhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC-----------HHHHHHHHHHh
Confidence 2222111 000 12335566655443 2345799999999998 88999999999
Q ss_pred hCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHH
Q 045279 558 DGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEA 608 (702)
Q Consensus 558 ~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~ 608 (702)
+.. ..++++|++|+.+..+-|++.+ |+ ..++|++|+.++...+++.
T Consensus 135 EEP--p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 135 EEP--SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCC--CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 964 4566777788888899999988 88 5899999999887666653
No 353
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.00 E-value=3.3e-09 Score=120.24 Aligned_cols=196 Identities=20% Similarity=0.248 Sum_probs=121.4
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK 502 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~ 502 (702)
..++.++|.....+.+.+.+.... ....+++|+|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 466788888877776666554432 345679999999999999999999875 579999999876332
Q ss_pred C-----cCchHH-------HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----C----
Q 045279 503 Y-----VGESEL-------AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----K---- 562 (702)
Q Consensus 503 ~-----~g~~~~-------~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~---- 562 (702)
. .|.... .....|..+ .+++|||||++.+. ..++..|+..++... +
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS-----------PAFQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC-----------HHHHHHHHHHHhcCcEEECCCCce
Confidence 1 111000 000112222 56899999999999 788888888886522 1
Q ss_pred -CCcEEEEEecCCC-------CccCccccCCCccc-eEEEcCCCC--HHHHHHHHHHHhccCC--CCCCCCHHHHhhhhc
Q 045279 563 -RKGVFVIGATNRP-------DVMDRAVLRPGRFG-KLLYVPLPT--PDERGLILEALARKKP--IDDSVDLHTIAQSKF 629 (702)
Q Consensus 563 -~~~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i~~~~p~--~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~ 629 (702)
..++.+|++|+.. ..+.+.+.. |+. ..|.+|+.. .++...|++.++.+.. ......+..-+...+
T Consensus 328 ~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 405 (534)
T TIGR01817 328 LKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVL 405 (534)
T ss_pred EeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 1247788888753 133344444 553 356666665 3455566777665422 111122222222122
Q ss_pred C-CCCCH--HHHHHHHHHHHHH
Q 045279 630 C-ENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 630 ~-~~~sg--~dl~~~~~~a~~~ 648 (702)
. ..|.| ++|+++++.|+..
T Consensus 406 ~~~~WPGNvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 406 MSCKWPGNVRELENCLERTATL 427 (534)
T ss_pred HhCCCCChHHHHHHHHHHHHHh
Confidence 2 35666 8999999988754
No 354
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.00 E-value=8.2e-09 Score=107.69 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=51.3
Q ss_pred CCCcc-cccCHHHHHHHHHHHhhhhccCCCcccccCC-CCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEEe
Q 045279 120 GPRFQ-DLGGMESVLEELKMEVIVPLYHPQLPQWLGV-RPMAGILLYGPPGCGKTKLAHAIANETGV-------PFYKIS 190 (702)
Q Consensus 120 ~~~~~-~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~-------~~~~i~ 190 (702)
..-|+ ++.|+++++.++.+.+..... |. .....++|+|||||||||+|++|++.++. +++.+.
T Consensus 46 y~~F~~~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~ 117 (361)
T smart00763 46 YRFFDHDFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFK 117 (361)
T ss_pred ccccchhccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEE
Confidence 34577 999999999999988865442 21 23466899999999999999999999965 777776
Q ss_pred c
Q 045279 191 A 191 (702)
Q Consensus 191 ~ 191 (702)
.
T Consensus 118 ~ 118 (361)
T smart00763 118 W 118 (361)
T ss_pred e
Confidence 6
No 355
>PRK04132 replication factor C small subunit; Provisional
Probab=99.00 E-value=3.3e-09 Score=122.48 Aligned_cols=157 Identities=20% Similarity=0.176 Sum_probs=114.8
Q ss_pred CCceEEEEC--CCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcccccccHHHHHHHHHHHHhh------CCceEEe
Q 045279 157 PMAGILLYG--PPGCGKTKLAHAIANET-----GVPFYKISATEVVSGVSGASEENIRDLFSKAYRT------APSIVFI 223 (702)
Q Consensus 157 ~~~~vLl~G--ppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~------~p~il~i 223 (702)
|+-+-+..| |++.||||+|++||+.+ +.+++.+|+++... -..++.++..+... ...|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 334456678 99999999999999998 56799999997421 23455555443322 2359999
Q ss_pred chhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceE
Q 045279 224 DEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDRE 303 (702)
Q Consensus 224 DEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~ 303 (702)
||+|.|.... .+.|+..|+.. ++++.+|++||.+..+.+++++ |+ ..
T Consensus 637 DEaD~Lt~~A-----------QnALLk~lEep-------------------~~~~~FILi~N~~~kIi~tIrS--RC-~~ 683 (846)
T PRK04132 637 DEADALTQDA-----------QQALRRTMEMF-------------------SSNVRFILSCNYSSKIIEPIQS--RC-AI 683 (846)
T ss_pred ECcccCCHHH-----------HHHHHHHhhCC-------------------CCCeEEEEEeCChhhCchHHhh--hc-eE
Confidence 9999997533 34588888852 4568999999999999999999 98 77
Q ss_pred EEeCCCCHHHHHHHHHHhhcCcccCC-cccHHHHHhhCCCCCHHHHHHHHH
Q 045279 304 IVLGVPDENARVQILSVLTRNLRVEG-SFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 304 i~~~~p~~~er~~Il~~~~~~~~~~~-~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
+.|..|+.++....+...+.+..+.. ...+..++..+.| +.+...++++
T Consensus 684 i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq 733 (846)
T PRK04132 684 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQ 733 (846)
T ss_pred EeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 99999999999999988887655432 3346677777776 3344334443
No 356
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.00 E-value=2.1e-09 Score=119.66 Aligned_cols=196 Identities=18% Similarity=0.206 Sum_probs=120.6
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK 502 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~ 502 (702)
..|+++.|.....+.+.+.+... .....++|++|++||||+++|+++.... +.||+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~-----------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY-----------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 45778888887766666655432 1345689999999999999999998764 679999999876432
Q ss_pred -----CcCchH--------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------
Q 045279 503 -----YVGESE--------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------- 561 (702)
Q Consensus 503 -----~~g~~~--------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------- 561 (702)
..|..+ .....+|+.| ..+.|||||++.+. ..++..|+..++...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMP-----------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCC-----------HHHHHHHHHHHhcCcEEecCCCc
Confidence 111100 0112345544 45899999999999 788888888886521
Q ss_pred -CCCcEEEEEecCCCC-------ccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhccCCCCCCCCHHHHhhhh--
Q 045279 562 -KRKGVFVIGATNRPD-------VMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARKKPIDDSVDLHTIAQSK-- 628 (702)
Q Consensus 562 -~~~~~~vI~atn~~~-------~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~~~~~~~~~~~~la~~~-- 628 (702)
...++-||++||..- .+.+.+.. |+. ..|.+|+... ++...++..++.+........+..-+...
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 421 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLA 421 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhH
Confidence 112457888887642 22333333 553 4555555543 34555666666653211111111111111
Q ss_pred -----c-CCCCCH--HHHHHHHHHHHHH
Q 045279 629 -----F-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 629 -----~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
+ ...|.| ++|++++.+++..
T Consensus 422 ~~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 422 GVADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 1 236766 8999999988764
No 357
>PRK09087 hypothetical protein; Validated
Probab=99.00 E-value=1.4e-08 Score=101.32 Aligned_cols=170 Identities=18% Similarity=0.155 Sum_probs=105.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG 542 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~ 542 (702)
...++|+||+|+|||+|+++++...+..+ ++..++.. .++.... ..+|+|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~~---~~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAAA---EGPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhhh---cCeEEEECCCCCCCC-----
Confidence 34489999999999999999998765543 33222211 1222221 158999999976311
Q ss_pred chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccCCCCC
Q 045279 543 GWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKKPIDD 617 (702)
Q Consensus 543 ~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~~~~~ 617 (702)
.+.+-.++..+. .....+||+++..|. ...+.+.+ ||. .++.+..|+.++|..|++..+....+.-
T Consensus 103 ----~~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 ----ETGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred ----HHHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 222333333332 234455665554443 34677777 885 7899999999999999999998766543
Q ss_pred C-CCHHHHhhhhcCCCCCHHHHHHHHH---HHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 618 S-VDLHTIAQSKFCENLSGADLAAMMN---EAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 618 ~-~~~~~la~~~~~~~~sg~dl~~~~~---~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+ ..++.|+.+ ..++++.+.. .....+.... ..||...+.+++..+
T Consensus 174 ~~ev~~~La~~------~~r~~~~l~~~l~~L~~~~~~~~------------~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSR------MERSLFAAQTIVDRLDRLALERK------------SRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHH------hhhhHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHhh
Confidence 3 335666632 3356665554 3322222221 268889999888765
No 358
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=1.7e-09 Score=114.29 Aligned_cols=197 Identities=23% Similarity=0.275 Sum_probs=123.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~ 501 (702)
......|+|.......+.+.|... ......+|+.|.+||||..+|++|.... ..||+.+||+-+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~V-----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVV-----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHH-----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 345667888887777666655443 2456789999999999999999999876 67999999976543
Q ss_pred c---------CcCchHHHH---HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------
Q 045279 502 K---------YVGESELAV---RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------- 561 (702)
Q Consensus 502 ~---------~~g~~~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------- 561 (702)
. --|.....+ +.-|+.| ..+.||+|||..+. ..++..||..+....
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElA---dGGTLFLDEIGelP-----------L~lQaKLLRvLQegEieRvG~~r 353 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELA---DGGTLFLDEIGELP-----------LALQAKLLRVLQEGEIERVGGDR 353 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeec---CCCeEechhhccCC-----------HHHHHHHHHHHhhcceeecCCCc
Confidence 2 112111111 2234444 56899999999998 788888988776421
Q ss_pred -CCCcEEEEEecCCC-------CccCccccCCCccceEEEcCCCCHHHHH----HHHHHHhccCCCCC---CCCHHHHhh
Q 045279 562 -KRKGVFVIGATNRP-------DVMDRAVLRPGRFGKLLYVPLPTPDERG----LILEALARKKPIDD---SVDLHTIAQ 626 (702)
Q Consensus 562 -~~~~~~vI~atn~~-------~~ld~a~~r~gRf~~~i~~~~p~~~~r~----~il~~~~~~~~~~~---~~~~~~la~ 626 (702)
..-.|-||+|||+- -.+...+.- |+. ++.+..|...||. -+..+++++..... ...+..-|.
T Consensus 354 ~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al 430 (550)
T COG3604 354 TIKVDVRVIAATNRDLEEMVRDGEFRADLYY--RLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEAL 430 (550)
T ss_pred eeEEEEEEEeccchhHHHHHHcCcchhhhhh--ccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHH
Confidence 12358899999973 122333333 443 4445556555553 33344444322111 122222222
Q ss_pred hhc-CCCCCH--HHHHHHHHHHHHHH
Q 045279 627 SKF-CENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 627 ~~~-~~~~sg--~dl~~~~~~a~~~a 649 (702)
..+ .-.|.| ++|.+++++|+..|
T Consensus 431 ~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 431 ELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 122 236777 99999999999877
No 359
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.99 E-value=1.8e-09 Score=120.04 Aligned_cols=192 Identities=22% Similarity=0.255 Sum_probs=118.6
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHH-----------hCCeEEEEe
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANE-----------AGANFIHIK 495 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~-----------~~~~~~~i~ 495 (702)
.|+++.|.....+.+.+.+.... ....++|++|++||||+++|+++... .+.||+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46778888877776666554321 34567999999999999999999887 367999999
Q ss_pred ccccccc-----CcCchH--------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-
Q 045279 496 GPELLNK-----YVGESE--------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD- 561 (702)
Q Consensus 496 ~~~l~~~-----~~g~~~--------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~- 561 (702)
|+.+... ..|..+ ..-..+|+.| ..+.||||||+.+. ..++..|+..++...
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp-----------~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMP-----------LPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCC-----------HHHHHHHHhhhhcCeE
Confidence 9876432 112110 0112355555 45899999999999 888889998886521
Q ss_pred --------CCCcEEEEEecCCCC--c-----cCccccCCCccceEEEcCCCCHHH----HHHHHHHHhcc----CCCCCC
Q 045279 562 --------KRKGVFVIGATNRPD--V-----MDRAVLRPGRFGKLLYVPLPTPDE----RGLILEALARK----KPIDDS 618 (702)
Q Consensus 562 --------~~~~~~vI~atn~~~--~-----ld~a~~r~gRf~~~i~~~~p~~~~----r~~il~~~~~~----~~~~~~ 618 (702)
...++-||++||..- . +.+.+.. |+. .+.+..|...+ ...++..++++ ....
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~-- 426 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAP-- 426 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCC--
Confidence 123467888887641 1 2223332 442 33444444444 44556666654 2221
Q ss_pred CCHHHH-----h-hhhcCCCCCH--HHHHHHHHHHHHH
Q 045279 619 VDLHTI-----A-QSKFCENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 619 ~~~~~l-----a-~~~~~~~~sg--~dl~~~~~~a~~~ 648 (702)
..-+.+ + ..-....|.| ++|++++.+++..
T Consensus 427 ~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 427 FSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred CCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 111111 0 0011236666 9999999998864
No 360
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.98 E-value=1.7e-09 Score=116.52 Aligned_cols=133 Identities=22% Similarity=0.244 Sum_probs=83.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEe-----cccccccCcCchHHHH--HHHHHHHHhC---CCeEEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIK-----GPELLNKYVGESELAV--RTLFSRARTC---SPCILFF 528 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~-----~~~l~~~~~g~~~~~~--~~~f~~a~~~---~~~vl~i 528 (702)
-...++||+||||||||++|++++...+. +|..+. .+++++.. +-... ..-|.+.... ...+||+
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l---~i~~~~~~g~f~r~~~G~L~~A~lLfL 113 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL---SIQALKDEGRYQRLTSGYLPEAEIVFL 113 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH---HHhhhhhcCchhhhcCCccccccEEee
Confidence 35678999999999999999999997643 333332 22333321 00000 1122222111 2249999
Q ss_pred eCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------CCCcEEEEEecCCCC---ccCccccCCCccceEEEcCCC
Q 045279 529 DEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------KRKGVFVIGATNRPD---VMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 529 DEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~atn~~~---~ld~a~~r~gRf~~~i~~~~p 597 (702)
|||..+. ...++.||..|..-. .-...++++|||... ...+++.. ||-..+.+|+|
T Consensus 114 DEI~ras-----------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l 180 (498)
T PRK13531 114 DEIWKAG-----------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKV 180 (498)
T ss_pred cccccCC-----------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCC
Confidence 9999887 889999999995321 112246666777532 24457877 99888999999
Q ss_pred C-HHHHHHHHHHH
Q 045279 598 T-PDERGLILEAL 609 (702)
Q Consensus 598 ~-~~~r~~il~~~ 609 (702)
+ .++-.+|+...
T Consensus 181 ~~~~~e~~lL~~~ 193 (498)
T PRK13531 181 QDKANFRSMLTSQ 193 (498)
T ss_pred CchHHHHHHHHcc
Confidence 7 45556777653
No 361
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.97 E-value=1.5e-09 Score=125.71 Aligned_cols=195 Identities=18% Similarity=0.257 Sum_probs=114.7
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc-
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN- 501 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~- 501 (702)
..|+++.|.....+.+.+.+.... ....+++|+|++||||+++|+++.... +.+|+.++|+.+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 357778887766555544443321 345569999999999999999999865 47999999976532
Q ss_pred ----cCcCch----HHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----C-----CC
Q 045279 502 ----KYVGES----ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----K-----RK 564 (702)
Q Consensus 502 ----~~~g~~----~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----~-----~~ 564 (702)
...|.. .......|+.| .+++||||||+.+. ..++..|+..++... + ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS-----------PELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 122211 10011123333 56899999999999 788888888886432 1 12
Q ss_pred cEEEEEecCCCC-------ccCccccCCCccceEEEcCCCCHHHH----HHHHHHHhccCC--CCCCCCHHHHhhhhc-C
Q 045279 565 GVFVIGATNRPD-------VMDRAVLRPGRFGKLLYVPLPTPDER----GLILEALARKKP--IDDSVDLHTIAQSKF-C 630 (702)
Q Consensus 565 ~~~vI~atn~~~-------~ld~a~~r~gRf~~~i~~~~p~~~~r----~~il~~~~~~~~--~~~~~~~~~la~~~~-~ 630 (702)
++.||+|||..- .+.+.+.. |+. .+.+..|...+| ..++..++.+.. ......+..-+...+ .
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 577888888641 22233322 342 344444444444 455566555421 111112222221122 2
Q ss_pred CCCCH--HHHHHHHHHHHHH
Q 045279 631 ENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 631 ~~~sg--~dl~~~~~~a~~~ 648 (702)
..|.| ++|+++++.|+..
T Consensus 534 y~WPGNvreL~~~l~~~~~~ 553 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALS 553 (638)
T ss_pred CCCCChHHHHHHHHHHHHHh
Confidence 35555 8999999987753
No 362
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=1.3e-08 Score=114.91 Aligned_cols=197 Identities=14% Similarity=0.184 Sum_probs=114.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE-Eechh---hh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK-ISATE---VV 195 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-i~~~~---l~ 195 (702)
+.++++|+|.++.++.|..++.... ++..+.+.++|+|||||||||+++.+|+.++..++. ++... ..
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 3489999999999999887764321 123445669999999999999999999998765433 22110 00
Q ss_pred ----------cc--cccccHHHHHHHHHHHHh----------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHH-HH
Q 045279 196 ----------SG--VSGASEENIRDLFSKAYR----------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMT-CM 252 (702)
Q Consensus 196 ----------~~--~~g~~~~~~~~~f~~a~~----------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~-~l 252 (702)
.. ........+..++..+.. ....||||||++.+..... ..+..++. ..
T Consensus 152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--------~~lq~lLr~~~ 223 (637)
T TIGR00602 152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--------RALHEILRWKY 223 (637)
T ss_pred cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------HHHHHHHHHHh
Confidence 00 011122344555555542 2456999999987764311 12233333 21
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-CC--------------CCCccccCCCCcceEEEeCCCCHHHHHHH
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR-PD--------------AVDPALRRPGRFDREIVLGVPDENARVQI 317 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~-~~--------------~ld~al~r~~Rf~~~i~~~~p~~~er~~I 317 (702)
.+ .+.+.+|++++. +. .+.+++++..|. .+|.|.+.+.......
T Consensus 224 ~e--------------------~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~ 282 (637)
T TIGR00602 224 VS--------------------IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKF 282 (637)
T ss_pred hc--------------------CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHH
Confidence 11 112334444432 11 133677653355 5799999999997777
Q ss_pred HHHhhcCcccC--------CcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 318 LSVLTRNLRVE--------GSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 318 l~~~~~~~~~~--------~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
|..++...... ....+..++.... +|++..+.....
T Consensus 283 L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~----GDiRsAIn~LQf 326 (637)
T TIGR00602 283 LNRIVTIEAKKNGEKIKVPKKTSVELLCQGCS----GDIRSAINSLQF 326 (637)
T ss_pred HHHHHHhhhhccccccccCCHHHHHHHHHhCC----ChHHHHHHHHHH
Confidence 77766543211 1123555665444 477776655433
No 363
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.95 E-value=8.4e-09 Score=115.92 Aligned_cols=197 Identities=23% Similarity=0.275 Sum_probs=119.8
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK-- 502 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~-- 502 (702)
..+++|.....+.+.+.+... ...+.++||+|++||||+++|+++.... +.+|+.++|+.+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 456777777666666555442 1346689999999999999999999875 579999999876432
Q ss_pred ---CcCchH-------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CC
Q 045279 503 ---YVGESE-------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KR 563 (702)
Q Consensus 503 ---~~g~~~-------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~ 563 (702)
..|... ......|+.| .+++||||||+.+. ..++..|+..++... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELP-----------LALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCC-----------HHHHHHHHHHHhcCCEeeCCCCccee
Confidence 111100 0001134443 56899999999999 788888888876422 12
Q ss_pred CcEEEEEecCCCC-------ccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhccCCCC---CCCCHHHHhhhhc-
Q 045279 564 KGVFVIGATNRPD-------VMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARKKPID---DSVDLHTIAQSKF- 629 (702)
Q Consensus 564 ~~~~vI~atn~~~-------~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~~~~~---~~~~~~~la~~~~- 629 (702)
.++-||++||..- .+.+.+.. |+. ..|.+|+... ++...++++++.+.... ....+..-+...+
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 3578888988641 34444444 553 2345554443 23445555555542110 1122222221122
Q ss_pred CCCCCH--HHHHHHHHHHHHHHHH
Q 045279 630 CENLSG--ADLAAMMNEAAMAALE 651 (702)
Q Consensus 630 ~~~~sg--~dl~~~~~~a~~~a~~ 651 (702)
...|.| ++|++++..|+..+..
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcCC
Confidence 236666 9999999999876543
No 364
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.95 E-value=3.9e-09 Score=99.75 Aligned_cols=118 Identities=25% Similarity=0.311 Sum_probs=81.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC-----------------------eEEEEecccccccCcCchHHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA-----------------------NFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~-----------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
+.+..+||+||+|+||+++|+.+|..+-. .+..++...... .-....++.+...
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~ 93 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEF 93 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHH
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHH
Confidence 45667899999999999999999987621 233333322100 1234566666665
Q ss_pred HH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEE
Q 045279 518 AR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLY 593 (702)
Q Consensus 518 a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~ 593 (702)
+. .....|++||++|.+. .+..|.||..|+.. ..++++|++|+.++.+-|.+++ |+ ..+.
T Consensus 94 ~~~~~~~~~~KviiI~~ad~l~-----------~~a~NaLLK~LEep--p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~ 157 (162)
T PF13177_consen 94 LSLSPSEGKYKVIIIDEADKLT-----------EEAQNALLKTLEEP--PENTYFILITNNPSKILPTIRS--RC-QVIR 157 (162)
T ss_dssp CTSS-TTSSSEEEEEETGGGS------------HHHHHHHHHHHHST--TTTEEEEEEES-GGGS-HHHHT--TS-EEEE
T ss_pred HHHHHhcCCceEEEeehHhhhh-----------HHHHHHHHHHhcCC--CCCEEEEEEECChHHChHHHHh--hc-eEEe
Confidence 43 2456799999999999 89999999999965 4678888899999999999998 88 4666
Q ss_pred cCCC
Q 045279 594 VPLP 597 (702)
Q Consensus 594 ~~~p 597 (702)
|++.
T Consensus 158 ~~~l 161 (162)
T PF13177_consen 158 FRPL 161 (162)
T ss_dssp E---
T ss_pred cCCC
Confidence 6654
No 365
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.94 E-value=1.6e-09 Score=121.28 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=105.5
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE----echhhhcc-
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI----SATEVVSG- 197 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i----~~~~l~~~- 197 (702)
.-+|.|++.+|..+.-.+..-. .+.......++...||||+|+||||||++|+++++......+.. ++..+...
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~-~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~ 280 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGV-HKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAV 280 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCC-ccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccc
Confidence 3568999998877764432211 01111112234456899999999999999999999876433221 22222211
Q ss_pred ----cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 ----VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ----~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
..|+..-. .+.+..| ...+++|||++.+.... ...|+..|+.-...+... +....
T Consensus 281 ~~~~~~g~~~~~-~G~l~~A---~~Gil~iDEi~~l~~~~-----------q~~L~e~me~~~i~i~k~------G~~~~ 339 (509)
T smart00350 281 TRDPETREFTLE-GGALVLA---DNGVCCIDEFDKMDDSD-----------RTAIHEAMEQQTISIAKA------GITTT 339 (509)
T ss_pred eEccCcceEEec-CccEEec---CCCEEEEechhhCCHHH-----------HHHHHHHHhcCEEEEEeC------CEEEE
Confidence 11111100 1112222 23499999999887443 234666666432111111 11112
Q ss_pred CCCeEEEEEecCCCC-------------CCCccccCCCCcceEE-EeCCCCHHHHHHHHHHhhcC
Q 045279 274 KPGYVLVIGATNRPD-------------AVDPALRRPGRFDREI-VLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 274 ~~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~~i-~~~~p~~~er~~Il~~~~~~ 324 (702)
.+.++.||||+|+.+ .+++++++ ||+-.+ ..+.|+.+...+|+.+.+..
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~ 402 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDL 402 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHh
Confidence 344589999999863 58999999 998755 55789999999999876643
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.94 E-value=1.2e-08 Score=113.07 Aligned_cols=30 Identities=37% Similarity=0.494 Sum_probs=27.0
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+-|+|+.|+|||||.+.|++..
T Consensus 24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 24 LTLNPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred ceeCCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356788999999999999999999999876
No 367
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.93 E-value=1.1e-08 Score=103.65 Aligned_cols=214 Identities=19% Similarity=0.250 Sum_probs=124.8
Q ss_pred CCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccccc--
Q 045279 432 GGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELL-- 500 (702)
Q Consensus 432 ~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~-- 500 (702)
+|....++.+.. +...+.+|. .....++|++|++|.|||++++.++..- ..|++.+.++.--
T Consensus 37 IgY~~A~~~L~~-L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~ 109 (302)
T PF05621_consen 37 IGYPRAKEALDR-LEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDE 109 (302)
T ss_pred ecCHHHHHHHHH-HHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCCh
Confidence 455555554433 333333332 2334679999999999999999998744 3467777654221
Q ss_pred ------------ccCc-Cc-hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcE
Q 045279 501 ------------NKYV-GE-SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGV 566 (702)
Q Consensus 501 ------------~~~~-g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 566 (702)
..|. .. ......++....+.....+|+|||++.+.... .+-+.++++.+....+.-++
T Consensus 110 ~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLGNELQI 181 (302)
T ss_pred HHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHhhccCC
Confidence 1121 11 11222333444566788999999999976332 11222333333322333333
Q ss_pred EEEEecCC----CCccCccccCCCccceEEEcCCCCH-HHHHHHHHHHhccCCCCCCCC--HHHHhhh--hcCCCCCHHH
Q 045279 567 FVIGATNR----PDVMDRAVLRPGRFGKLLYVPLPTP-DERGLILEALARKKPIDDSVD--LHTIAQS--KFCENLSGAD 637 (702)
Q Consensus 567 ~vI~atn~----~~~ld~a~~r~gRf~~~i~~~~p~~-~~r~~il~~~~~~~~~~~~~~--~~~la~~--~~~~~~sg~d 637 (702)
-+|++... .-.-|+.+.+ ||+ .+..|.... ++...++..+....++....+ -..++.. ..++|.. ++
T Consensus 182 piV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~ 257 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GE 257 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HH
Confidence 34443321 2345777777 996 555666553 466778888777666654333 2344422 2344443 68
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHH
Q 045279 638 LAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQ 675 (702)
Q Consensus 638 l~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~ 675 (702)
+.++++.|+..|++...+ .||.+++..
T Consensus 258 l~~ll~~aA~~AI~sG~E-----------~It~~~l~~ 284 (302)
T PF05621_consen 258 LSRLLNAAAIAAIRSGEE-----------RITREILDK 284 (302)
T ss_pred HHHHHHHHHHHHHhcCCc-----------eecHHHHhh
Confidence 999999999999988654 788887765
No 368
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=8e-09 Score=108.55 Aligned_cols=132 Identities=22% Similarity=0.264 Sum_probs=97.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe-------------------------EEEEeccccc---------------
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------------------FIHIKGPELL--------------- 500 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------------------~~~i~~~~l~--------------- 500 (702)
+.+.++||+||+|+||+++|+.+|..+.+. +..+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 667889999999999999999999877331 1122111000
Q ss_pred ---cc----C-cCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 501 ---NK----Y-VGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 501 ---~~----~-~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
++ + -.-+-..+|.+...+. .....|++||++|.+. ....|.||+.|+. ...++++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEE--Pp~~t~f 165 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN-----------VAAANALLKTLEE--PPPGTVF 165 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC-----------HHHHHHHHHHhcC--CCcCcEE
Confidence 00 0 0012345666665543 2345799999999999 8999999999995 5567888
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEA 608 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~ 608 (702)
|++|+.++.|.|.+++ |+ ..+.|++|+.++..+.+..
T Consensus 166 iL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHH
Confidence 8899999999999998 99 6899999999988877765
No 369
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.93 E-value=9.7e-09 Score=116.55 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=94.2
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEecccccccCcCchHHHHHHHHHH---------HHhCCCeEEEEeCc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNKYVGESELAVRTLFSR---------ARTCSPCILFFDEV 531 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~~~g~~~~~~~~~f~~---------a~~~~~~vl~iDEi 531 (702)
-.|+||.|+||||||++|++++..+.. +|+.+.........+|.- .+...+.. ......++|||||+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 457999999999999999999998753 688887543333333431 11110000 01124579999999
Q ss_pred chhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC---ccCccccCCCccceEEEcC-C
Q 045279 532 DALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD---VMDRAVLRPGRFGKLLYVP-L 596 (702)
Q Consensus 532 d~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~---~ld~a~~r~gRf~~~i~~~-~ 596 (702)
+.+. ..+++.|+..|+... ...++.||+|+|..+ .+.++++. ||+.++.+. +
T Consensus 94 ~rl~-----------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~ 160 (589)
T TIGR02031 94 NLLD-----------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDV 160 (589)
T ss_pred hhCC-----------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCC
Confidence 9999 888999999887432 124678898888765 68888888 999877666 4
Q ss_pred CCHHHHHHHHHHHh
Q 045279 597 PTPDERGLILEALA 610 (702)
Q Consensus 597 p~~~~r~~il~~~~ 610 (702)
|+.++|.+|++..+
T Consensus 161 ~~~~er~eil~~~~ 174 (589)
T TIGR02031 161 ASQDLRVEIVRRER 174 (589)
T ss_pred CCHHHHHHHHHHHH
Confidence 56778888888765
No 370
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.93 E-value=1.9e-08 Score=98.91 Aligned_cols=131 Identities=21% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-------------CCccCccccCCCc
Q 045279 521 CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-------------PDVMDRAVLRPGR 587 (702)
Q Consensus 521 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-------------~~~ld~a~~r~gR 587 (702)
.-|+||||||++.|. -+-+..|-+.++..- --+||+|||+ |..+.+.++. |
T Consensus 295 lvPGVLFIDEVhMLD-----------iEcFTyL~kalES~i---aPivifAsNrG~~~irGt~d~~sPhGip~dllD--R 358 (456)
T KOG1942|consen 295 LVPGVLFIDEVHMLD-----------IECFTYLHKALESPI---APIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--R 358 (456)
T ss_pred hcCcceEeeehhhhh-----------hHHHHHHHHHhcCCC---CceEEEecCCcceeecCCcCCCCCCCCCHHHhh--h
Confidence 468999999999987 667777767776432 2377888885 4566777776 7
Q ss_pred cceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-CHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCc
Q 045279 588 FGKLLYVPLPTPDERGLILEALARKKPIDDSV-DLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPF 666 (702)
Q Consensus 588 f~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~ 666 (702)
+ .+|..-+++.++.++|++...+...+.-+. .+..++. + -+..-||-+++-..-+.+-.... ...
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~--~---gt~tsLRy~vqLl~p~~~~ak~~--------g~~ 424 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAE--I---GTSTSLRYAVQLLTPASILAKTN--------GRK 424 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHh--h---ccchhHHHHHHhcCHHHHHHHHc--------CCc
Confidence 7 467777888888899999988877765433 3444552 1 13345666555333222222111 112
Q ss_pred cccHHHHHHHHhhcC
Q 045279 667 TIKLTHFEQALSKIS 681 (702)
Q Consensus 667 ~i~~~d~~~al~~~~ 681 (702)
.|..+|++++-.-+-
T Consensus 425 ~i~v~dvee~~~Lf~ 439 (456)
T KOG1942|consen 425 EISVEDVEEVTELFL 439 (456)
T ss_pred eeecccHHHHHHHHH
Confidence 677788887765543
No 371
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.90 E-value=5.5e-09 Score=117.06 Aligned_cols=165 Identities=14% Similarity=0.184 Sum_probs=99.5
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe-EEEE---ecccccccCcC
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-FIHI---KGPELLNKYVG 505 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-~~~i---~~~~l~~~~~g 505 (702)
.|.|.+.+|..+.-.+..... +.......+....++||+|+||||||++|++++...... |+.. ++..+....+.
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 467777777655332211100 000001112334579999999999999999999987533 2221 11112111000
Q ss_pred c---hHHHH-HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEE
Q 045279 506 E---SELAV-RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVIG 570 (702)
Q Consensus 506 ~---~~~~~-~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~ 570 (702)
. ++..+ ...+. ....++++|||++.+. ...+..|+..|+... -..++.||+
T Consensus 283 ~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~-----------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 283 DPETREFTLEGGALV---LADNGVCCIDEFDKMD-----------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred ccCcceEEecCccEE---ecCCCEEEEechhhCC-----------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 0 00000 00111 1256899999999998 677788887776532 125688999
Q ss_pred ecCCCC-------------ccCccccCCCccceEEEc-CCCCHHHHHHHHHHHhc
Q 045279 571 ATNRPD-------------VMDRAVLRPGRFGKLLYV-PLPTPDERGLILEALAR 611 (702)
Q Consensus 571 atn~~~-------------~ld~a~~r~gRf~~~i~~-~~p~~~~r~~il~~~~~ 611 (702)
|+|..+ .|++++++ |||.++.+ +.|+.+....|.++.+.
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 999652 58899999 99986554 67888888888887553
No 372
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.90 E-value=1.3e-08 Score=114.33 Aligned_cols=196 Identities=16% Similarity=0.220 Sum_probs=116.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~ 501 (702)
...|+++.|.....+.+.+.+... .....+++|+|++||||+++|+++.... ..+|+.++|+.+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 456788888777655554433322 1235569999999999999999987654 46999999987643
Q ss_pred c-----CcCchH-------HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------
Q 045279 502 K-----YVGESE-------LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------- 561 (702)
Q Consensus 502 ~-----~~g~~~-------~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------- 561 (702)
. ..|... .....+|+.| ..+.|||||++.+. ..++..|+..+....
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS-----------PRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC-----------HHHHHHHHHHHhcCCcccCCCCc
Confidence 1 111110 0112345544 45899999999998 778888888776421
Q ss_pred -CCCcEEEEEecCCCC-------ccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhcc----CCCCCCCCHHHHhh
Q 045279 562 -KRKGVFVIGATNRPD-------VMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARK----KPIDDSVDLHTIAQ 626 (702)
Q Consensus 562 -~~~~~~vI~atn~~~-------~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~~~~~~~~la~ 626 (702)
...++.||++|+.+- .+.+.+.. |+. ..|.+|+... ++...++..++.+ .+.. ...+..-+.
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~-~~~ls~~a~ 411 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP-RPKLAADLN 411 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC-CCCcCHHHH
Confidence 123567888887641 24444544 654 3444444433 2333444455443 2221 112222222
Q ss_pred hhcC-CCCCH--HHHHHHHHHHHHH
Q 045279 627 SKFC-ENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 627 ~~~~-~~~sg--~dl~~~~~~a~~~ 648 (702)
..+. ..|.| ++|++++..|+..
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 1222 35666 8999999888754
No 373
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.90 E-value=1.1e-08 Score=102.32 Aligned_cols=192 Identities=17% Similarity=0.165 Sum_probs=124.9
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe------EEEE
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN------FIHI 494 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------~~~i 494 (702)
...+.....++++.+++...+.+.. +...-.+.|+|||||||||+...+.|..+-.+ +.+.
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~-------------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lel 99 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYS-------------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLEL 99 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhc-------------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHh
Confidence 3344556677777777766666531 22233389999999999999999999987442 2334
Q ss_pred ecccccccCcCchHHHHHHHHHHHHh-------CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEE
Q 045279 495 KGPELLNKYVGESELAVRTLFSRART-------CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVF 567 (702)
Q Consensus 495 ~~~~l~~~~~g~~~~~~~~~f~~a~~-------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 567 (702)
+.++-.+. ...+.....|+.++. ..+..+++||+|+.. ...+|.|-+..+.+..+.++.
T Consensus 100 naSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT-----------~~AQnALRRviek~t~n~rF~ 165 (360)
T KOG0990|consen 100 NASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT-----------RDAQNALRRVIEKYTANTRFA 165 (360)
T ss_pred hccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHhh-----------HHHHHHHHHHHHHhccceEEE
Confidence 44443221 122233355655552 377899999999999 889999988877665544444
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
..+|.+..+-|++.. ||. .+.|.+.+...-...+.............+ ...++ ..+-+|++.+++...
T Consensus 166 --ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~------r~s~gDmr~a~n~Lq 234 (360)
T KOG0990|consen 166 --TISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALG------RLSVGDMRVALNYLQ 234 (360)
T ss_pred --EeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHH------HHhHHHHHHHHHHHH
Confidence 558999999999988 885 666777777666677777766554433222 12222 235577777776554
Q ss_pred HHHH
Q 045279 647 MAAL 650 (702)
Q Consensus 647 ~~a~ 650 (702)
..+.
T Consensus 235 s~~~ 238 (360)
T KOG0990|consen 235 SILK 238 (360)
T ss_pred HHHH
Confidence 4333
No 374
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.89 E-value=1.1e-08 Score=96.79 Aligned_cols=134 Identities=26% Similarity=0.367 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------------
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------------- 185 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------------- 185 (702)
|++.+++.|...+.. -+-+..+||+||+|+||+++|.++|+.+-..
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 788888888877622 2445679999999999999999999987321
Q ss_pred -eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 186 -FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 186 -~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
++.++...-.. .-....++.+...+. .+...|++||++|.|... ..+.||..|++.
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-----------a~NaLLK~LEep----- 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-----------AQNALLKTLEEP----- 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-----------HHHHHHHHHHST-----
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-----------HHHHHHHHhcCC-----
Confidence 22222211100 112345555555543 224569999999988754 345699999973
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCC
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVP 309 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p 309 (702)
+.++++|.+|+.++.|-|.+++ |+ ..+.|+..
T Consensus 130 --------------p~~~~fiL~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 130 --------------PENTYFILITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp --------------TTTEEEEEEES-GGGS-HHHHT--TS-EEEEE---
T ss_pred --------------CCCEEEEEEECChHHChHHHHh--hc-eEEecCCC
Confidence 5679999999999999999999 98 66777654
No 375
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.89 E-value=1.7e-08 Score=95.80 Aligned_cols=100 Identities=27% Similarity=0.442 Sum_probs=69.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc-----CcCch-------HHHHHHHHHHHHhCCCeE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK-----YVGES-------ELAVRTLFSRARTCSPCI 525 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~-----~~g~~-------~~~~~~~f~~a~~~~~~v 525 (702)
..+.++||+|++||||+.+|+++.+.. +.||+.++|+.+... ..|.. ......+|+.| ..++
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A---~~Gt 96 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQA---NGGT 96 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHT---TTSE
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeec---cceE
Confidence 345789999999999999999999865 579999999876422 11110 01112456666 5589
Q ss_pred EEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCC
Q 045279 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNR 574 (702)
Q Consensus 526 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~ 574 (702)
||||||+.|. ..++..|+..|+... ..-++.||++|+.
T Consensus 97 L~Ld~I~~L~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 97 LFLDEIEDLP-----------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp EEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred EeecchhhhH-----------HHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 9999999999 888999999887421 1236889999986
No 376
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.88 E-value=2.6e-08 Score=97.64 Aligned_cols=153 Identities=20% Similarity=0.329 Sum_probs=112.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh-CC--e--------------------------EEEEecccccccCcCc-hHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA-GA--N--------------------------FIHIKGPELLNKYVGE-SELAVRT 513 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~-~~--~--------------------------~~~i~~~~l~~~~~g~-~~~~~~~ 513 (702)
.|+++|||+|+||-|.+.++-+++ |. . .+++++|+ .|. ..--++.
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQe 109 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQE 109 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHH
Confidence 589999999999999999998876 21 1 12233333 232 2223445
Q ss_pred HHHHHH---------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccC
Q 045279 514 LFSRAR---------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLR 584 (702)
Q Consensus 514 ~f~~a~---------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r 584 (702)
+++..- .....|++|-|+|.|. .+.+..|-+.|+.+.+.. -+|+.+|....+-+++.+
T Consensus 110 llKevAQt~qie~~~qr~fKvvvi~ead~LT-----------~dAQ~aLRRTMEkYs~~~--RlIl~cns~SriIepIrS 176 (351)
T KOG2035|consen 110 LLKEVAQTQQIETQGQRPFKVVVINEADELT-----------RDAQHALRRTMEKYSSNC--RLILVCNSTSRIIEPIRS 176 (351)
T ss_pred HHHHHHhhcchhhccccceEEEEEechHhhh-----------HHHHHHHHHHHHHHhcCc--eEEEEecCcccchhHHhh
Confidence 554432 2356799999999999 899999999999876654 455568988889998977
Q ss_pred CCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCH-HHHhhhhcCCCCCHHHHHHHHH
Q 045279 585 PGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDL-HTIAQSKFCENLSGADLAAMMN 643 (702)
Q Consensus 585 ~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~-~~la~~~~~~~~sg~dl~~~~~ 643 (702)
|+ ..|.+|.|+.++...++...+++.++..+.++ ..+|++ |++++|..+-
T Consensus 177 --RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k------S~~nLRrAll 227 (351)
T KOG2035|consen 177 --RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK------SNRNLRRALL 227 (351)
T ss_pred --he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH------hcccHHHHHH
Confidence 87 58999999999999999999999888766443 445532 7789987654
No 377
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.88 E-value=3.4e-08 Score=115.29 Aligned_cols=195 Identities=22% Similarity=0.282 Sum_probs=118.4
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK 502 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~ 502 (702)
..|.++.|.....+.+.+.+.... ....+++++|++|||||++|+++.... +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 356778888877776665554321 345679999999999999999998865 579999999865321
Q ss_pred -----CcCch-------HHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------
Q 045279 503 -----YVGES-------ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------- 561 (702)
Q Consensus 503 -----~~g~~-------~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------- 561 (702)
..|.. .......|+.| .+++|||||++.+. ..++..|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a---~~GtL~Ldei~~L~-----------~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELA---DKSSLFLDEVGDMP-----------LELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhc---CCCeEEEechhhCC-----------HHHHHHHHHHHHhCCEEeCCCCCc
Confidence 11210 01112334444 56899999999998 788888888886521
Q ss_pred CCCcEEEEEecCCCC-------ccCccccCCCccceEEEcCCCCHHHH----HHHHHHHhccC----CCCC-CCCHHHHh
Q 045279 562 KRKGVFVIGATNRPD-------VMDRAVLRPGRFGKLLYVPLPTPDER----GLILEALARKK----PIDD-SVDLHTIA 625 (702)
Q Consensus 562 ~~~~~~vI~atn~~~-------~ld~a~~r~gRf~~~i~~~~p~~~~r----~~il~~~~~~~----~~~~-~~~~~~la 625 (702)
...++.||++|+..- .+.+.+.. |+. .+.+..|...+| ..+++.++.+. +... ...-+.+.
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 124578888887641 22333333 443 334444544444 34556555432 2111 11112221
Q ss_pred hhhcCCCCCH--HHHHHHHHHHHHHH
Q 045279 626 QSKFCENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 626 ~~~~~~~~sg--~dl~~~~~~a~~~a 649 (702)
. -....|.| ++|+++++.|+..+
T Consensus 585 ~-L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 T-LSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred H-HHhCCCCCcHHHHHHHHHHHHHhC
Confidence 1 11236766 99999999998643
No 378
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.88 E-value=8.1e-10 Score=97.25 Aligned_cols=108 Identities=31% Similarity=0.379 Sum_probs=60.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc-ccc-----ccCcCchHHHHHHHHHHHHh-CCCeEEEEeCcchhhcc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP-ELL-----NKYVGESELAVRTLFSRART-CSPCILFFDEVDALTTK 537 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~-~l~-----~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~ 537 (702)
|+||.|+||+|||++|+++|..++..|.+|.+. ++. +..+..... .-|.-.+. .-..|+|+|||....
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNrap-- 75 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRAP-- 75 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccCC--
Confidence 589999999999999999999999999988764 332 211111000 00000000 012599999999988
Q ss_pred cCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEEecCCCC-----ccCccccCCCcc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIGATNRPD-----VMDRAVLRPGRF 588 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~atn~~~-----~ld~a~~r~gRf 588 (702)
.++++.||..|... .-....+||+|-|..+ .+..+++. ||
T Consensus 76 ---------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 76 ---------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ---------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 78888999887652 2234578888889765 56677766 76
No 379
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=1.9e-08 Score=105.00 Aligned_cols=129 Identities=17% Similarity=0.193 Sum_probs=96.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC------------------------eEEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA------------------------NFIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+||+++|+.+|..+-+ .|..+...+ ++. -+...+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHH
Confidence 45678899999999999999999987632 122222110 111 13445666655
Q ss_pred HHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+. .....|++||++|.+. ....|.||+.|+. +..++++|.+|+.++.+-|.+++ |+ ..+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~-----------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~ 161 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLT-----------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RC-QTW 161 (325)
T ss_pred HHhhccccCCceEEEEechhhhC-----------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hc-eEE
Confidence 543 3455799999999999 8999999999996 45677888899999999999988 99 488
Q ss_pred EcCCCCHHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEAL 609 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~ 609 (702)
.|++|+.++..+.+...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999998877776653
No 380
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.87 E-value=5.5e-09 Score=114.89 Aligned_cols=154 Identities=22% Similarity=0.293 Sum_probs=97.9
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe--EEEechhhhc---
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF--YKISATEVVS--- 196 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~--~~i~~~~l~~--- 196 (702)
.|.++.|...+++.+.- .+..+.+++|+||||||||++++.++..+...- ..+..+.+.+
T Consensus 189 d~~~v~Gq~~~~~al~l---------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI---------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhe---------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 78889998887776542 345678999999999999999999988763110 1111111110
Q ss_pred -----------------------ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 197 -----------------------GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 197 -----------------------~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
...|.....-.+.+..|.++ +|||||++.+. ..++..|+..|+
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~-----------~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFE-----------RRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCC-----------HHHHHHHHHHHH
Confidence 01121111113456666444 99999997654 345566777776
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---------------------CCCccccCCCCcceEEEeCCCCHH
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---------------------AVDPALRRPGRFDREIVLGVPDEN 312 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---------------------~ld~al~r~~Rf~~~i~~~~p~~~ 312 (702)
+-...+... ......+-++++|+|+|+.. .++.+++. ||+-.+.++.|+.+
T Consensus 320 ~g~v~I~r~------g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRT------RAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecC------CcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 543222211 11222356699999999853 36778888 99999999999876
No 381
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.86 E-value=3.7e-09 Score=108.34 Aligned_cols=148 Identities=15% Similarity=0.250 Sum_probs=86.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC---eEEEechhhhcccccccHHHHHHHHHHHH-----------hhCCceE
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVP---FYKISATEVVSGVSGASEENIRDLFSKAY-----------RTAPSIV 221 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~---~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-----------~~~p~il 221 (702)
..+.++||+||+|||||++++.+-..+... ...++++... +...+..+++... .+...|+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 346789999999999999999887766432 2344444321 1122222222111 1234599
Q ss_pred EechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCC
Q 045279 222 FIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPG 298 (702)
Q Consensus 222 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~ 298 (702)
||||++.-..+.-.. +-.-+|++++-+...+++.... .+..-.++.+|||+++.. .+++++.|
T Consensus 105 fiDDlN~p~~d~ygt------q~~iElLRQ~i~~~g~yd~~~~------~~~~i~~i~~vaa~~p~~Gr~~is~R~~r-- 170 (272)
T PF12775_consen 105 FIDDLNMPQPDKYGT------QPPIELLRQLIDYGGFYDRKKL------EWKSIEDIQFVAAMNPTGGRNPISPRFLR-- 170 (272)
T ss_dssp EEETTT-S---TTS--------HHHHHHHHHHHCSEEECTTTT------EEEEECSEEEEEEESSTTT--SHHHHHHT--
T ss_pred EecccCCCCCCCCCC------cCHHHHHHHHHHhcCcccCCCc------EEEEEeeeEEEEecCCCCCCCCCChHHhh--
Confidence 999997655443222 2233566666555555543211 111123489999998754 58899999
Q ss_pred CcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 299 RFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 299 Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
.| .++.++.|+.+....|+..++..
T Consensus 171 ~f-~i~~~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 171 HF-NILNIPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp TE-EEEE----TCCHHHHHHHHHHHH
T ss_pred he-EEEEecCCChHHHHHHHHHHHhh
Confidence 88 78999999999999999876653
No 382
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=2.1e-08 Score=105.41 Aligned_cols=133 Identities=21% Similarity=0.299 Sum_probs=94.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCe-------------------------EEEechhhhc--------------
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPF-------------------------YKISATEVVS-------------- 196 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~-------------------------~~i~~~~l~~-------------- 196 (702)
+-++.+||+||+|+||+++|+.+|+.+.+.. +.+.......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 5567899999999999999999999885421 1121110000
Q ss_pred cccc---------ccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 197 GVSG---------ASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 197 ~~~g---------~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
...| -.-..++.+...+. .+...|++||++|.|... ..+.||+.+++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE--------- 158 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-----------AANALLKTLEE--------- 158 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-----------HHHHHHHHhcC---------
Confidence 0000 11234555555432 233459999999988744 34568998886
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
.|.++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 159 ----------Pp~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 159 ----------PPPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred ----------CCcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 46679999999999999999999 99 77999999999988888653
No 383
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.84 E-value=3.9e-09 Score=121.82 Aligned_cols=183 Identities=14% Similarity=0.106 Sum_probs=105.7
Q ss_pred CCCCCceEEEECCCCCCHHHH-HHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhC---------------
Q 045279 154 GVRPMAGILLYGPPGCGKTKL-AHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTA--------------- 217 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~l-a~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~--------------- 217 (702)
.+...++++++||||+|||++ .-+|-.++-..++.+|.+.-.. ...+-.++++-....
T Consensus 1490 ~lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~------T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK 1563 (3164)
T COG5245 1490 ALNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM------TPSKLSVLERETEYYPNTGVVRLYPKPVVK 1563 (3164)
T ss_pred HHhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC------CHHHHHHHHhhceeeccCCeEEEccCcchh
Confidence 355778999999999999996 4567777778888888765322 122223333322111
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCC-----Cc
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAV-----DP 292 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~l-----d~ 292 (702)
..|||.|||+ |+....- ...-+-.+++.|-+.+.++.+...... .--++++.|+||++... +.
T Consensus 1564 ~lVLFcDeIn-Lp~~~~y-----~~~~vI~FlR~l~e~QGfw~s~~~~wv------TI~~i~l~Gacnp~td~gRv~~~e 1631 (3164)
T COG5245 1564 DLVLFCDEIN-LPYGFEY-----YPPTVIVFLRPLVERQGFWSSIAVSWV------TICGIILYGACNPGTDEGRVKYYE 1631 (3164)
T ss_pred heEEEeeccC-Ccccccc-----CCCceEEeeHHHHHhcccccchhhhHh------hhcceEEEccCCCCCCcccCccHH
Confidence 1399999998 4322211 111122244444444444333222111 12348999999997643 34
Q ss_pred cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC-------------cccHH--------HHHhhCCCCCHHHHHHH
Q 045279 293 ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG-------------SFDLV--------KIARSTPGFVGADLAAL 351 (702)
Q Consensus 293 al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~-------------~~~~~--------~la~~t~g~~~~dl~~l 351 (702)
++.| |- ..+.+.+|....+.+|+..++....+-. .+.+- ...+..-+|+||+|.++
T Consensus 1632 Rf~r--~~-v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~ 1708 (3164)
T COG5245 1632 RFIR--KP-VFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRS 1708 (3164)
T ss_pred HHhc--Cc-eEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHH
Confidence 5555 43 5678999999999999987665432110 11111 11122357999999888
Q ss_pred HHHHHH
Q 045279 352 ANKAGN 357 (702)
Q Consensus 352 ~~~a~~ 357 (702)
++....
T Consensus 1709 lr~i~~ 1714 (3164)
T COG5245 1709 LRAIFG 1714 (3164)
T ss_pred HHHHHh
Confidence 775443
No 384
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.84 E-value=5.7e-08 Score=110.51 Aligned_cols=50 Identities=30% Similarity=0.379 Sum_probs=42.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
.-|++++|++++++.+...+. .+.+++|+||||||||++++++++.++..
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~---------------~~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAK---------------QKRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHH---------------cCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 468999999999998887662 22489999999999999999999988654
No 385
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=3.8e-08 Score=102.77 Aligned_cols=145 Identities=13% Similarity=0.227 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------------
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------------- 185 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------------- 185 (702)
.+....+.+...+.. -+-++.+||+||+|+||+++|+.+|+.+.+.
T Consensus 6 W~~~~~~~l~~~~~~------------~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~H 73 (325)
T PRK06871 6 WLQPTYQQITQAFQQ------------GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNH 73 (325)
T ss_pred chHHHHHHHHHHHHc------------CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 355666666655521 2345789999999999999999999987431
Q ss_pred --eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcccc
Q 045279 186 --FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLV 259 (702)
Q Consensus 186 --~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 259 (702)
++.+... .+ ..-....++.+.+.+. .+...|++||++|.|... ..+.||+.+++
T Consensus 74 PD~~~i~p~---~~-~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~-----------AaNaLLKtLEE----- 133 (325)
T PRK06871 74 PDFHILEPI---DN-KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEA-----------AANALLKTLEE----- 133 (325)
T ss_pred CCEEEEccc---cC-CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHH-----------HHHHHHHHhcC-----
Confidence 1112110 00 0112345555554443 334469999999988744 34569999886
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 260 QPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
.|+++++|.+|+.++.+.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 134 --------------Pp~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 134 --------------PRPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred --------------CCCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999999 98 77999999999988887754
No 386
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.82 E-value=2.5e-07 Score=91.57 Aligned_cols=131 Identities=22% Similarity=0.273 Sum_probs=86.2
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC------------CCccCccccCCCccc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR------------PDVMDRAVLRPGRFG 589 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~------------~~~ld~a~~r~gRf~ 589 (702)
-|+||||||++.|. -+-+.-|=..+++ .---++|++||+ |+.|+-.|+. |.
T Consensus 288 vpGVLFIDEvHMLD-----------IEcFsFlNrAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R~- 350 (454)
T KOG2680|consen 288 VPGVLFIDEVHMLD-----------IECFSFLNRALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLD--RM- 350 (454)
T ss_pred ccceEEEeeehhhh-----------hHHHHHHHHHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhh--hh-
Confidence 58899999999876 3333333233332 112367778875 4566667766 66
Q ss_pred eEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccc
Q 045279 590 KLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTI 668 (702)
Q Consensus 590 ~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i 668 (702)
.+|...+++.++..+||+..+.+..+.-+.+ ++.|. .+...-+=+-.-+++..|.+.|.++.-. .+
T Consensus 351 lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt--~i~~~tsLRYai~Lit~a~~~~~krk~~-----------~v 417 (454)
T KOG2680|consen 351 LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLT--KIGEATSLRYAIHLITAASLVCLKRKGK-----------VV 417 (454)
T ss_pred heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHhcCc-----------ee
Confidence 4788889999999999999998876654433 33333 2222223355556777777777777543 78
Q ss_pred cHHHHHHHHhhcCC
Q 045279 669 KLTHFEQALSKISP 682 (702)
Q Consensus 669 ~~~d~~~al~~~~~ 682 (702)
..+|++.|+.-+..
T Consensus 418 ~~~di~r~y~LFlD 431 (454)
T KOG2680|consen 418 EVDDIERVYRLFLD 431 (454)
T ss_pred ehhHHHHHHHHHhh
Confidence 88999999887744
No 387
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.82 E-value=1.8e-07 Score=91.74 Aligned_cols=170 Identities=21% Similarity=0.307 Sum_probs=120.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-CC----------------
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-GV---------------- 184 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~---------------- 184 (702)
+++.+.+.++....+..... -..-.|+++|||+|+||-|.+.++.+++ |.
T Consensus 11 sl~~l~~~~e~~~~Lksl~~-------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSS-------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hhhhcccHHHHHHHHHHhcc-------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 68888998888888875441 1223679999999999999999998876 21
Q ss_pred ------------CeEEEechhhhcccccccHH-HHHHHHHHHHhhC---------CceEEechhhHhhhcchhhhHHHHH
Q 045279 185 ------------PFYKISATEVVSGVSGASEE-NIRDLFSKAYRTA---------PSIVFIDEIDAIASKRENLQREMER 242 (702)
Q Consensus 185 ------------~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~---------p~il~iDEid~l~~~~~~~~~~~~~ 242 (702)
..+++++++. |..+. .+.+++....... ..+++|-|+|.|..+.+.
T Consensus 78 ~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~------- 145 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQH------- 145 (351)
T ss_pred CceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHH-------
Confidence 1123333332 32222 3455555544332 249999999988755433
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 243 RIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 243 ~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
.|.+.|+.+. +++++|..||....+-+++++ |+ -.|.++.|+.++-..++...+
T Consensus 146 ----aLRRTMEkYs-------------------~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~ 199 (351)
T KOG2035|consen 146 ----ALRRTMEKYS-------------------SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVL 199 (351)
T ss_pred ----HHHHHHHHHh-------------------cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHH
Confidence 4667777653 358899999999999999999 88 679999999999999999998
Q ss_pred cCcccCCccc-HHHHHhhCCC
Q 045279 323 RNLRVEGSFD-LVKIARSTPG 342 (702)
Q Consensus 323 ~~~~~~~~~~-~~~la~~t~g 342 (702)
++..+....+ +..+++...|
T Consensus 200 ~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 200 KKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred HHhcccCcHHHHHHHHHHhcc
Confidence 8877654443 5567766655
No 388
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.81 E-value=1.2e-07 Score=93.39 Aligned_cols=54 Identities=35% Similarity=0.400 Sum_probs=39.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.-.-++|++.+.+..--.+ ..++. ..-.++.+||.||||||||.||-+|++++|
T Consensus 36 ~~~g~vGQ~~AReAagiiv-dlik~-------KkmaGravLlaGppgtGKTAlAlaisqELG 89 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIV-DLIKS-------KKMAGRAVLLAGPPGTGKTALALAISQELG 89 (456)
T ss_pred cccccccchhhhhhhhHHH-HHHHh-------hhccCcEEEEecCCCCchhHHHHHHHHHhC
Confidence 4567899998887644222 22222 233568899999999999999999999984
No 389
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=3.7e-08 Score=103.93 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=95.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC------------------------eEEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA------------------------NFIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~------------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+||+++|.++|..+-+ .+..+.+..- +. .-+...+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~--~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KS--SLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cc--cCCHHHHHHHHH
Confidence 55678999999999999999999987622 1222221100 00 012345566655
Q ss_pred HHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+. .....|++||++|.+. ....|.||+.|+.. ..++++|.+|+.++.|-|.+++ |+- .+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT-----------DAAANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 443 3456799999999999 89999999999964 5678888899999999999988 996 68
Q ss_pred EcCCCCHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILE 607 (702)
Q Consensus 593 ~~~~p~~~~r~~il~ 607 (702)
.|++|+.++....+.
T Consensus 163 ~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 163 YLAPPPEQYALTWLS 177 (334)
T ss_pred cCCCCCHHHHHHHHH
Confidence 999999887776664
No 390
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.79 E-value=3.1e-08 Score=112.09 Aligned_cols=146 Identities=20% Similarity=0.230 Sum_probs=88.2
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-------------------CCCcEEEEEecCCC--CccCc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------------------KRKGVFVIGATNRP--DVMDR 580 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------------------~~~~~~vI~atn~~--~~ld~ 580 (702)
..++|||||++.|. ...+..|+..|.... -..++.||+++|+. ..+||
T Consensus 226 nGGtL~LDei~~L~-----------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dp 294 (637)
T PRK13765 226 HKGVLFIDEINTLD-----------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHP 294 (637)
T ss_pred CCcEEEEeChHhCC-----------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhH
Confidence 45799999999886 667777777764311 11356888888874 57799
Q ss_pred cccCCCccc---eEEEcCC--C-CHHHHHHHHHHHhccCCC---CCCCC---HHHHhhhhc--C--CC---CCHHHHHHH
Q 045279 581 AVLRPGRFG---KLLYVPL--P-TPDERGLILEALARKKPI---DDSVD---LHTIAQSKF--C--EN---LSGADLAAM 641 (702)
Q Consensus 581 a~~r~gRf~---~~i~~~~--p-~~~~r~~il~~~~~~~~~---~~~~~---~~~la~~~~--~--~~---~sg~dl~~~ 641 (702)
+|.. ||. ..+.|.. + +.+.+..+++...+.... ....+ +..+..... . .+ ..-++|..+
T Consensus 295 dL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l 372 (637)
T PRK13765 295 ALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGL 372 (637)
T ss_pred HHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHH
Confidence 9987 875 5566653 2 245666666654443221 11222 223332110 0 11 235789999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHH
Q 045279 642 MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRY 692 (702)
Q Consensus 642 ~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~ 692 (702)
+++|...|..+... .|+.+|+.+|+... .++.++..+.|
T Consensus 373 ~r~a~~~a~~~~~~-----------~i~~~~v~~a~~~~-~~i~~~~~~~~ 411 (637)
T PRK13765 373 VRVAGDIARSEGAE-----------LTTAEHVLEAKKIA-RSIEQQLADRY 411 (637)
T ss_pred HHHHHHHHHhhccc-----------eecHHHHHHHHHhh-hhhhHHHHHHH
Confidence 99988777666432 68899999998553 33544444433
No 391
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.79 E-value=9e-08 Score=100.02 Aligned_cols=164 Identities=20% Similarity=0.234 Sum_probs=106.8
Q ss_pred cc-ccCCcccchhhhHHHHHHHhhChHHHHHcCC-CCCcceEEEcCCCCChhHHHHHHHHHhCC-------eEEEEec--
Q 045279 428 WE-DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV-DLETGFLLYGPPGCGKTLIAKAVANEAGA-------NFIHIKG-- 496 (702)
Q Consensus 428 ~~-~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------~~~~i~~-- 496 (702)
|+ ++.|+++++..+.+.+.... .|. .....++|+||||+|||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 44 79999999887776654442 122 23466899999999999999999998855 7777765
Q ss_pred --ccccccCcCchHH-----------------------------------------------------------------
Q 045279 497 --PELLNKYVGESEL----------------------------------------------------------------- 509 (702)
Q Consensus 497 --~~l~~~~~g~~~~----------------------------------------------------------------- 509 (702)
+.+.....+-...
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~ 200 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENN 200 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCc
Confidence 3222110000000
Q ss_pred -HHHHHHH-----H-----------------HHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----
Q 045279 510 -AVRTLFS-----R-----------------ARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----- 561 (702)
Q Consensus 510 -~~~~~f~-----~-----------------a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----- 561 (702)
.+..+.. + .-..+.+|+-|+|+.+.. .++++.||..++...
T Consensus 201 qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~-----------~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 201 QDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKAD-----------IKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred ccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCC-----------HHHHHHHhhhhhcceEecCC
Confidence 0111110 0 011234678888888777 889999999887521
Q ss_pred ----CCCcEEEEEecCCCC-------ccCccccCCCccceEEEcCCCC-HHHHHHHHHHHhccC
Q 045279 562 ----KRKGVFVIGATNRPD-------VMDRAVLRPGRFGKLLYVPLPT-PDERGLILEALARKK 613 (702)
Q Consensus 562 ----~~~~~~vI~atn~~~-------~ld~a~~r~gRf~~~i~~~~p~-~~~r~~il~~~~~~~ 613 (702)
-.-..+||++||..+ ...++|++ ||. .+++|.+. ..+-.+|.+..+...
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 112357888999762 56788988 997 88888775 566678888887753
No 392
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.79 E-value=8.8e-09 Score=116.88 Aligned_cols=142 Identities=21% Similarity=0.367 Sum_probs=94.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechhhhcccccccH--HHH--------HHHHHHHHhhCCceEEechh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV--PFYKISATEVVSGVSGASE--ENI--------RDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~l~~~~~g~~~--~~~--------~~~f~~a~~~~p~il~iDEi 226 (702)
.+|||.|+||||||++|++|++.++. +|+.+..........|... ..+ .+++..+ ...+||||||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 68999999999999999999998764 5888876433333334321 000 1112222 2349999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCCccccCCCCcceE
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVDPALRRPGRFDRE 303 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld~al~r~~Rf~~~ 303 (702)
+.+... ....|+..|++....+... +.....+.+++||+|+|+.+ .+.+++.. ||..+
T Consensus 94 ~rl~~~-----------~q~~Ll~al~~g~v~i~r~------G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~ 154 (589)
T TIGR02031 94 NLLDDG-----------LSNRLLQALDEGVVIVERE------GISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALH 154 (589)
T ss_pred hhCCHH-----------HHHHHHHHHHcCCeEEEEC------CCceeecCceEEEEecCCccccCCCCHHHHH--hccCe
Confidence 988754 3445777777533211111 11222345689999999875 78899999 99887
Q ss_pred EEeC-CCCHHHHHHHHHHhh
Q 045279 304 IVLG-VPDENARVQILSVLT 322 (702)
Q Consensus 304 i~~~-~p~~~er~~Il~~~~ 322 (702)
+.+. .|+.++|.+|++...
T Consensus 155 v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 155 VSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred eecCCCCCHHHHHHHHHHHH
Confidence 7666 557788999998765
No 393
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=8.2e-08 Score=100.11 Aligned_cols=132 Identities=23% Similarity=0.279 Sum_probs=94.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe---------------------EEEEe--cccccccC-cCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN---------------------FIHIK--GPELLNKY-VGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~---------------------~~~i~--~~~l~~~~-~g~~~~~~~~~f~ 516 (702)
+.+..+||+||+|+||+++|.++|..+-+. +..+. +.+-..+. ..-.-..+|.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 456679999999999999999999866221 12221 10000000 0012445666666
Q ss_pred HHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+.. ....|++||++|.+. ....|.||+.|+... .++++|.+|+.++.|-|.+++ |+ ..+
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEPp--~~~~fiL~~~~~~~lLpTIrS--RC-q~i 167 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN-----------RAACNALLKTLEEPS--PGRYLWLISAQPARLPATIRS--RC-QRL 167 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC-----------HHHHHHHHHHhhCCC--CCCeEEEEECChhhCchHHHh--hh-eEe
Confidence 5533 345799999999998 889999999999654 466777789999999999988 99 488
Q ss_pred EcCCCCHHHHHHHHHH
Q 045279 593 YVPLPTPDERGLILEA 608 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~ 608 (702)
.|+.|+.++....+..
T Consensus 168 ~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 168 EFKLPPAHEALAWLLA 183 (319)
T ss_pred eCCCcCHHHHHHHHHH
Confidence 8999999877766653
No 394
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=6.3e-08 Score=100.83 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=95.9
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC-----------------------eEEEEecccccccCcCchHHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA-----------------------NFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~-----------------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
+.+..+||+||.|+||+++|+.+|..+-+ .|..+.... .++. -+...+|.+...
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHH
Confidence 55678999999999999999999986622 222232211 0011 123456666555
Q ss_pred HH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEE
Q 045279 518 AR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLY 593 (702)
Q Consensus 518 a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~ 593 (702)
+. .....|++||++|.+. ....|.||+.|+.. ..++++|..|+.++.+-|.+++ |+- .+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~-----------~~AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~ 163 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN-----------ESASNALLKTLEEP--APNCLFLLVTHNQKRLLPTIVS--RCQ-QWV 163 (319)
T ss_pred HhhCcccCCceEEEecchhhhC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--cce-eEe
Confidence 43 2346799999999999 88999999999964 4578888899999999999988 994 889
Q ss_pred cCCCCHHHHHHHHHH
Q 045279 594 VPLPTPDERGLILEA 608 (702)
Q Consensus 594 ~~~p~~~~r~~il~~ 608 (702)
|++|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999887776653
No 395
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.77 E-value=2.7e-08 Score=109.45 Aligned_cols=124 Identities=25% Similarity=0.384 Sum_probs=80.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC----eEEEEec------c-----cc-----ccc--------CcCchHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA----NFIHIKG------P-----EL-----LNK--------YVGESELAVR 512 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~----~~~~i~~------~-----~l-----~~~--------~~g~~~~~~~ 512 (702)
....+++|+||||+|||++++.++..+.. ..+.+.. . .+ ... .+|.+...--
T Consensus 208 ~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p 287 (506)
T PRK09862 208 AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP 287 (506)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh
Confidence 45678999999999999999999986521 1111110 0 01 000 1121111111
Q ss_pred HHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-----
Q 045279 513 TLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD----- 576 (702)
Q Consensus 513 ~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~----- 576 (702)
..+..| ..++|||||++.+. ..++..|++.|+... ...++.+|+|+|...
T Consensus 288 G~l~~A---~gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 288 GEISLA---HNGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred hHhhhc---cCCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecC
Confidence 234444 45899999999887 788888888886522 235689999999742
Q ss_pred ----------------ccCccccCCCccceEEEcCCCCHH
Q 045279 577 ----------------VMDRAVLRPGRFGKLLYVPLPTPD 600 (702)
Q Consensus 577 ----------------~ld~a~~r~gRf~~~i~~~~p~~~ 600 (702)
.+..+++. |||..+.++.++.+
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 36667777 99999999988643
No 396
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.76 E-value=2.3e-08 Score=114.91 Aligned_cols=178 Identities=17% Similarity=0.208 Sum_probs=103.6
Q ss_pred ccccCHHHHHHHHHHHhhhhccCC----Ccc----cccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-------CCeEE
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHP----QLP----QWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-------VPFYK 188 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~----~~~----~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-------~~~~~ 188 (702)
-.|.|++.+|+.+.-.+..-.... ... ....++...+|||+|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 468999999988764443222110 000 002345667999999999999999999988653 23344
Q ss_pred Eechhhhcc---cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 045279 189 ISATEVVSG---VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265 (702)
Q Consensus 189 i~~~~l~~~---~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~ 265 (702)
+.+...... ..|..... .+.+..|. ..+++|||++.|....+ ..|+..|+.-...+...
T Consensus 530 vgLTa~~~~~d~~tG~~~le-~GaLvlAd---gGtL~IDEidkms~~~Q-----------~aLlEaMEqqtIsI~Ka--- 591 (915)
T PTZ00111 530 VGLTASIKFNESDNGRAMIQ-PGAVVLAN---GGVCCIDELDKCHNESR-----------LSLYEVMEQQTVTIAKA--- 591 (915)
T ss_pred ccccchhhhcccccCccccc-CCcEEEcC---CCeEEecchhhCCHHHH-----------HHHHHHHhCCEEEEecC---
Confidence 433332210 01111000 11222332 34999999998874432 34666676432211111
Q ss_pred CCCCCCCCCCCeEEEEEecCCCC-------------CCCccccCCCCcceEE-EeCCCCHHHHHHHHHHhhcC
Q 045279 266 SKSDASDSKPGYVLVIGATNRPD-------------AVDPALRRPGRFDREI-VLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 266 ~~~~~~~~~~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~~i-~~~~p~~~er~~Il~~~~~~ 324 (702)
+.....+.++.||||+|+.+ .+++++++ ||+-++ .++.|+.+.=..|..++++.
T Consensus 592 ---Gi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 592 ---GIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred ---CcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 11122345689999999953 57899999 998765 56677776666666665543
No 397
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=9e-08 Score=101.01 Aligned_cols=150 Identities=21% Similarity=0.328 Sum_probs=101.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCC------------------------eEEEechhhhcccccccHHHHHHHHH
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVP------------------------FYKISATEVVSGVSGASEENIRDLFS 211 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~ 211 (702)
+-++.+||+||+|+||+++|.++|+.+-+. ++.+.... +...-....++.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~~~I~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---GKSSLGVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---ccccCCHHHHHHHHH
Confidence 456789999999999999999999987331 11121100 000012334555554
Q ss_pred HHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC
Q 045279 212 KAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP 287 (702)
Q Consensus 212 ~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~ 287 (702)
.+. .+...|++||++|.|... ..+.||+.+++ .|+++++|.+|+.+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE-------------------Pp~~t~fiL~t~~~ 148 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDA-----------AANALLKTLEE-------------------PPENTWFFLACREP 148 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCHH-----------HHHHHHHHhcC-------------------CCCCeEEEEEECCh
Confidence 443 345569999999998744 34569999986 46779999999999
Q ss_pred CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCH
Q 045279 288 DAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVG 345 (702)
Q Consensus 288 ~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~ 345 (702)
+.+.|.+++ |+ ..+.|++|+.++..+.+.... ... ......+++...|-.+
T Consensus 149 ~~lLpTIrS--RC-q~~~~~~~~~~~~~~~L~~~~---~~~-~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 149 ARLLATLRS--RC-RLHYLAPPPEQYALTWLSREV---TMS-QDALLAALRLSAGAPG 199 (334)
T ss_pred hhChHHHHh--cc-ccccCCCCCHHHHHHHHHHcc---CCC-HHHHHHHHHHcCCCHH
Confidence 999999999 99 468999999988777775321 111 1223445556666443
No 398
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1.6e-07 Score=97.86 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE-----EEechhhhcc-----
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY-----KISATEVVSG----- 197 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-----~i~~~~l~~~----- 197 (702)
.+..+.+.+...+. .-+-++.+||+||+|+||+++|.++|+.+-+.-. .-+|.-+..+
T Consensus 8 W~~~~~~~l~~~~~------------~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 8 WQQRAYDQTVAALD------------AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred cHHHHHHHHHHHHH------------cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE
Confidence 35566777776552 1234567999999999999999999988733110 0001001000
Q ss_pred --------ccc------ccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcccc
Q 045279 198 --------VSG------ASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLV 259 (702)
Q Consensus 198 --------~~g------~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 259 (702)
..| -....++.+.+.+.. +...|++||++|.|... ..+.||+.+++
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE----- 139 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRA-----------ACNALLKTLEE----- 139 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHH-----------HHHHHHHHhhC-----
Confidence 001 113345555554432 23469999999998743 34568998886
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhh
Q 045279 260 QPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARS 339 (702)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~ 339 (702)
.|+++++|.+|+.++.+-|.+++ |+ ..+.|+.|+.++..+.+... ... ......++..
T Consensus 140 --------------Pp~~~~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l 197 (319)
T PRK08769 140 --------------PSPGRYLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDA 197 (319)
T ss_pred --------------CCCCCeEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHH
Confidence 35678899999999999999999 99 77999999998887777642 111 1223345556
Q ss_pred CCCCCHHH
Q 045279 340 TPGFVGAD 347 (702)
Q Consensus 340 t~g~~~~d 347 (702)
..|-.+..
T Consensus 198 ~~G~p~~A 205 (319)
T PRK08769 198 ARGHPGLA 205 (319)
T ss_pred cCCCHHHH
Confidence 66654433
No 399
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=9.5e-08 Score=100.43 Aligned_cols=132 Identities=18% Similarity=0.219 Sum_probs=96.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC-------------------------eEEEEecccc---cccC-cCchHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA-------------------------NFIHIKGPEL---LNKY-VGESELAV 511 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------------------~~~~i~~~~l---~~~~-~g~~~~~~ 511 (702)
+.+..+||+||+|+|||++|+.+|..+.+ .|+.+.+..- .++. ..-+-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 56678999999999999999999997632 2333433110 0000 00134567
Q ss_pred HHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCc
Q 045279 512 RTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGR 587 (702)
Q Consensus 512 ~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gR 587 (702)
|.+.+.+.. ....|++||+++.+. ....+.|+..|+... .++.+|++|+.++.+.+.+.+ |
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld-----------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S--R 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN-----------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS--R 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC-----------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH--H
Confidence 777776653 345799999999998 888999999998764 346677789999999999888 8
Q ss_pred cceEEEcCCCCHHHHHHHHHH
Q 045279 588 FGKLLYVPLPTPDERGLILEA 608 (702)
Q Consensus 588 f~~~i~~~~p~~~~r~~il~~ 608 (702)
+ ..+.|++|+.++....+..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 8 5888999999887766643
No 400
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=1.5e-07 Score=97.99 Aligned_cols=143 Identities=19% Similarity=0.211 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC----------------------
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP---------------------- 185 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~---------------------- 185 (702)
.+....+.+...+. .-+-++.+||+||.|+||+++|+.+|+.+-+.
T Consensus 7 Wl~~~~~~l~~~~~------------~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 7 WLVPVWQNWKAGLD------------AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHP 74 (319)
T ss_pred cHHHHHHHHHHHHH------------cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCC
Confidence 45666777765552 12446789999999999999999999987321
Q ss_pred -eEEEechhhhcccccc--cHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 186 -FYKISATEVVSGVSGA--SEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 186 -~~~i~~~~l~~~~~g~--~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
++.+.... .|. ....++.+.+.+. .++..|++||++|.|... ..+.||+.+++
T Consensus 75 D~~~i~p~~-----~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE---- 134 (319)
T PRK06090 75 DLHVIKPEK-----EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNES-----------ASNALLKTLEE---- 134 (319)
T ss_pred CEEEEecCc-----CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHH-----------HHHHHHHHhcC----
Confidence 22222110 011 2234555544432 234569999999998743 34568999886
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
.|.++++|..|+.++.+-|.+++ |+ ..+.|+.|+.++..+.+..
T Consensus 135 ---------------Pp~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 135 ---------------PAPNCLFLLVTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ---------------CCCCeEEEEEECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 46679999999999999999999 99 6799999999998887764
No 401
>PRK08116 hypothetical protein; Validated
Probab=98.72 E-value=3.4e-08 Score=101.19 Aligned_cols=124 Identities=23% Similarity=0.324 Sum_probs=74.5
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCc----CchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYV----GESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
+.|++|+|++|||||+||.++|+.+ +.+++.++.++++..+. +........++.... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 77888888888765432 111112223333332 44699999996432
Q ss_pred cccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC-Cc----cCccccCCCcc---ceEEEcCCCCHH
Q 045279 536 TKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP-DV----MDRAVLRPGRF---GKLLYVPLPTPD 600 (702)
Q Consensus 536 ~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~-~~----ld~a~~r~gRf---~~~i~~~~p~~~ 600 (702)
.. ...+..|...++.... .+..+|.|||.+ .. ++..+.. |+ -..|.++-++..
T Consensus 192 ------~t---~~~~~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~R 252 (268)
T PRK08116 192 ------DT---EWAREKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSYR 252 (268)
T ss_pred ------CC---HHHHHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcChh
Confidence 11 2223334444443211 122366688874 22 4666665 64 345666666653
No 402
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.71 E-value=2.4e-08 Score=111.04 Aligned_cols=201 Identities=17% Similarity=0.180 Sum_probs=118.6
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV 198 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~ 198 (702)
.+..++|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHH
Confidence 4567888888877777665321 2345679999999999999999997765 4689999999874321
Q ss_pred -----ccc----c---HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 199 -----SGA----S---EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 199 -----~g~----~---~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
.|. . .....+.|+.+ .+.+||||||+.|....+ ..|+..++.... ...++
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q-----------~~l~~~l~~~~~-~~~~~--- 267 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPLNLQ-----------AKLLRFLQERVI-ERLGG--- 267 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCHHHH-----------HHHHHHHhhCeE-EeCCC---
Confidence 110 0 00112223333 345999999998875433 345565553211 01111
Q ss_pred CCCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc----C---
Q 045279 267 KSDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV----E--- 328 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~----~--- 328 (702)
....+.++++|++|+.. ..+.+.|.. |+ ..+.+..|+..+|.+ ++..++..+.. .
T Consensus 268 ----~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 340 (445)
T TIGR02915 268 ----REEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKG 340 (445)
T ss_pred ----CceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 11123458999999874 234444544 66 457788888887765 33334333211 1
Q ss_pred Cc-ccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 329 GS-FDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 329 ~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.. ..+..+....=-.+.++|++++..|+..
T Consensus 341 ~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 341 FTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred CCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 11 1233344333234778899888887654
No 403
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.71 E-value=7.5e-07 Score=92.02 Aligned_cols=173 Identities=14% Similarity=0.197 Sum_probs=96.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-CeEE---Eec----hhhh----ccc----ccccH-H---HHHHHH-HHHHhhC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV-PFYK---ISA----TEVV----SGV----SGASE-E---NIRDLF-SKAYRTA 217 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~-~~~~---i~~----~~l~----~~~----~g~~~-~---~~~~~f-~~a~~~~ 217 (702)
..++|+||+|+||||+++.+++.+.. .+.. +++ .++. ..+ .+... . .+...+ .....+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45899999999999999999998762 2221 111 1111 001 11111 1 122222 2223456
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC--CCCC-C---
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR--PDAV-D--- 291 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~--~~~l-d--- 291 (702)
+.+|+|||++.+.... ...+ ..+..... .....+.|+.+..+ .+.+ +
T Consensus 124 ~~vliiDe~~~l~~~~-----------~~~l-~~l~~~~~---------------~~~~~~~vvl~g~~~~~~~l~~~~~ 176 (269)
T TIGR03015 124 RALLVVDEAQNLTPEL-----------LEEL-RMLSNFQT---------------DNAKLLQIFLVGQPEFRETLQSPQL 176 (269)
T ss_pred CeEEEEECcccCCHHH-----------HHHH-HHHhCccc---------------CCCCeEEEEEcCCHHHHHHHcCchh
Confidence 6799999998775221 1112 11211100 01112333333322 1122 1
Q ss_pred ccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc-----CCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 045279 292 PALRRPGRFDREIVLGVPDENARVQILSVLTRNLRV-----EGSFDLVKIARSTPGFVGADLAALANKAGNLAMK 361 (702)
Q Consensus 292 ~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~-----~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~ 361 (702)
..+.+ |+...+.+++.+.++..+++...+..... -....+..+++.+.|.. +.+..+|..+...+..
T Consensus 177 ~~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~ 248 (269)
T TIGR03015 177 QQLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFL 248 (269)
T ss_pred HHHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHH
Confidence 23556 77778899999999999999887764432 12234677888888875 4588888887766544
No 404
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.66 E-value=3.9e-07 Score=95.57 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=106.1
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc--------
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP-------- 497 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~-------- 497 (702)
..|.-+.|++.+|..|--.- -.+.-.|+|+.|+.|||||+++|+||..+.---+...|.
T Consensus 14 ~pf~aivGqd~lk~aL~l~a-------------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNA-------------VDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhh-------------cccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 34667888888887663211 123346789999999999999999999873211111110
Q ss_pred ------------------------cccccCcCchHHH------HHHHHH----------HHHhCCCeEEEEeCcchhhcc
Q 045279 498 ------------------------ELLNKYVGESELA------VRTLFS----------RARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 498 ------------------------~l~~~~~g~~~~~------~~~~f~----------~a~~~~~~vl~iDEid~l~~~ 537 (702)
.++..=.|.++.. +....+ .|+ ...+||+|||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~-AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLAR-ANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhh-ccCCEEEEecccccc--
Confidence 0111111223331 111111 122 255899999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhhCC-----------CCCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCCC-HHHHHH
Q 045279 538 RGKEGGWVVERLLNQLLIELDGA-----------DKRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLPT-PDERGL 604 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p~-~~~r~~ 604 (702)
+.+++.||..+..- ....++++|+|+|.-+ .|-|.++- ||...+.+..|. .++|..
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 89999999877651 2345789999999754 68888888 999999888765 688999
Q ss_pred HHHHHhcc
Q 045279 605 ILEALARK 612 (702)
Q Consensus 605 il~~~~~~ 612 (702)
|.+..+.-
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 98876554
No 405
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.66 E-value=4.6e-07 Score=100.59 Aligned_cols=174 Identities=19% Similarity=0.281 Sum_probs=96.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc-c------ccCcCchHH-----HHHHHHH-----HHH-----
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL-L------NKYVGESEL-----AVRTLFS-----RAR----- 519 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l-~------~~~~g~~~~-----~~~~~f~-----~a~----- 519 (702)
..+-+||+||||||||+++++||++++..+.+...+.. . ..|.+.... .--..|. .++
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~ 123 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLS 123 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 34457889999999999999999999988877542221 1 111111000 0011122 111
Q ss_pred ------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe-cC------CC--------Ccc
Q 045279 520 ------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA-TN------RP--------DVM 578 (702)
Q Consensus 520 ------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a-tn------~~--------~~l 578 (702)
...+.||+|+|+=.+.... . .++...|...+... ....+++|++ +. .. ..+
T Consensus 124 ~~g~~~~~~~kvILVEDlPN~~~~~------~-~~f~~~L~~~l~~~-~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~ 195 (519)
T PF03215_consen 124 MSGSNSSSNKKVILVEDLPNVFHRD------T-SRFREALRQYLRSS-RCLPLVFIISETESLSGDNSYRSNSFTAERLF 195 (519)
T ss_pred ccCCCcCCCceEEEeeccccccchh------H-HHHHHHHHHHHHcC-CCCCEEEEEecccccCCCCcccccchhhhhcc
Confidence 1246799999987655221 1 22333333333321 1115556555 11 11 145
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccC--------CCCCCCC-HHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK--------PIDDSVD-LHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~--------~~~~~~~-~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
.+.++...++ ..|.|.+-...-..+.|+..+... ....... ++.|+. -++||||.+|+.....+
T Consensus 196 ~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~------~s~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 196 PKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAE------SSNGDIRSAINNLQFWC 268 (519)
T ss_pred CHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHH------hcCchHHHHHHHHHHHh
Confidence 5666543345 478888887766666666655543 1111122 556662 26689999999888888
Q ss_pred H
Q 045279 650 L 650 (702)
Q Consensus 650 ~ 650 (702)
.
T Consensus 269 ~ 269 (519)
T PF03215_consen 269 L 269 (519)
T ss_pred c
Confidence 7
No 406
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.66 E-value=4.1e-08 Score=110.00 Aligned_cols=202 Identities=18% Similarity=0.197 Sum_probs=120.2
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV 198 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~ 198 (702)
.+.+++|.......+.+.+.. ......++++.|++|||||++|++|.... +.+|+.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~-----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR-----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHH-----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 467789988888877766632 12345679999999999999999998875 4699999998763321
Q ss_pred -----ccccH-------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 199 -----SGASE-------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 199 -----~g~~~-------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
.|... ....+.|+.+ .+.+||||||+.|....+ ..|+..++.... ...++..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~-~~~~~~~- 268 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPLDVQ-----------TRLLRVLADGQF-YRVGGYA- 268 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCHHHH-----------HHHHHHHhcCcE-EeCCCCC-
Confidence 11100 0001223333 245999999998875433 346666653211 1111111
Q ss_pred CCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc----C---
Q 045279 267 KSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV----E--- 328 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~----~--- 328 (702)
..+-++.+|+||+..- .+.+.|.. || ..+.+..|+..+|.+ ++..++..... .
T Consensus 269 ------~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 339 (469)
T PRK10923 269 ------PVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKL 339 (469)
T ss_pred ------eEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCC
Confidence 1123589999997631 35556666 77 456777777766654 44444433211 1
Q ss_pred -CcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 329 -GSFDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 -~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
....+..+....=-.+.++|+++++.++..+
T Consensus 340 ~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 340 LHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 1112333443333347789999988876543
No 407
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.65 E-value=1e-06 Score=89.52 Aligned_cols=202 Identities=19% Similarity=0.244 Sum_probs=111.9
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEechhhhc
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISATEVVS 196 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~~~l~~ 196 (702)
-+|+..+.+.+. .+...+.+|. .....++||+|++|.|||++++.+..... .|++.+.+..-.+
T Consensus 36 WIgY~~A~~~L~-~L~~Ll~~P~------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 36 WIGYPRAKEALD-RLEELLEYPK------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred eecCHHHHHHHH-HHHHHHhCCc------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 366666655444 3334444443 23346799999999999999999987642 3566655432111
Q ss_pred c--------------c-c-cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccC
Q 045279 197 G--------------V-S-GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQ 260 (702)
Q Consensus 197 ~--------------~-~-g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 260 (702)
. + . ......-..++......++.+|+|||+|.++......+ +.+++.|...-.++.
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~q----r~~Ln~LK~L~NeL~---- 180 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQ----REFLNALKFLGNELQ---- 180 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHH----HHHHHHHHHHhhccC----
Confidence 1 1 0 11111122233344455777999999999875432221 222333322222211
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEecCCCC--CCCccccCCCCcceEEEeCCCC-HHHHHHHHHHhhcCcccCCc-----cc
Q 045279 261 PGDQKSKSDASDSKPGYVLVIGATNRPD--AVDPALRRPGRFDREIVLGVPD-ENARVQILSVLTRNLRVEGS-----FD 332 (702)
Q Consensus 261 ~~~~~~~~~~~~~~~~~v~vI~atn~~~--~ld~al~r~~Rf~~~i~~~~p~-~~er~~Il~~~~~~~~~~~~-----~~ 332 (702)
=.++.+||..-.. .-|+.+.+ || ..+.+|... .++...++..+-..+.+... ..
T Consensus 181 ---------------ipiV~vGt~~A~~al~~D~QLa~--RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~ 242 (302)
T PF05621_consen 181 ---------------IPIVGVGTREAYRALRTDPQLAS--RF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPE 242 (302)
T ss_pred ---------------CCeEEeccHHHHHHhccCHHHHh--cc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHH
Confidence 1155555433222 45788888 99 446666543 35566666666555544321 12
Q ss_pred -HHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 045279 333 -LVKIARSTPGFVGADLAALANKAGNLAMK 361 (702)
Q Consensus 333 -~~~la~~t~g~~~~dl~~l~~~a~~~a~~ 361 (702)
...+...+.|..| ++..++..|+..|++
T Consensus 243 la~~i~~~s~G~iG-~l~~ll~~aA~~AI~ 271 (302)
T PF05621_consen 243 LARRIHERSEGLIG-ELSRLLNAAAIAAIR 271 (302)
T ss_pred HHHHHHHHcCCchH-HHHHHHHHHHHHHHh
Confidence 3456667777554 778888888777765
No 408
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=5.1e-09 Score=110.93 Aligned_cols=148 Identities=22% Similarity=0.317 Sum_probs=91.3
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC---------CeEEEEec
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG---------ANFIHIKG 496 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~---------~~~~~i~~ 496 (702)
..|.|+.|++..|+.+.-+. .-..|+||+||||||||++|+-+...+. ...+..-.
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 46889999999999885432 3457899999999999999999987541 01011000
Q ss_pred cccccc--------C--cCchHHHHHHHHH--------HHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 497 PELLNK--------Y--VGESELAVRTLFS--------RARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 497 ~~l~~~--------~--~g~~~~~~~~~f~--------~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
.++... | .+.+... ..+.. ..-....+||||||+-.+- +.+++.|.+-|+
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~-~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~-----------~~iLe~LR~PLE 308 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASL-AALVGGGGVPRPGEISLAHNGVLFLDELPEFK-----------RSILEALREPLE 308 (490)
T ss_pred ccccccCccceeCCccCCCccchH-HHHhCCCCCCCCCceeeecCCEEEeeccchhh-----------HHHHHHHhCccc
Confidence 111100 0 0111100 01110 0111244799999988776 888999988887
Q ss_pred CCC-----------CCCcEEEEEecCCC-----------------------CccCccccCCCccceEEEcCCCCHHHH
Q 045279 559 GAD-----------KRKGVFVIGATNRP-----------------------DVMDRAVLRPGRFGKLLYVPLPTPDER 602 (702)
Q Consensus 559 ~~~-----------~~~~~~vI~atn~~-----------------------~~ld~a~~r~gRf~~~i~~~~p~~~~r 602 (702)
... -..++.+|+++|.. ..|...|+. |||..+.++.++..++
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~ 384 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGEL 384 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHh
Confidence 621 12456778888842 245556666 9999999998775443
No 409
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=1.8e-06 Score=90.91 Aligned_cols=230 Identities=20% Similarity=0.227 Sum_probs=141.1
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccccccc---
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNK--- 502 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~--- 502 (702)
+.|-+.-...+++++...+ ....+.++.+.|.||||||.+..-+-... ....+.++|..+...
T Consensus 152 l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 152 LKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred ccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 4555666666666554443 23556788999999999999888555433 224578888754321
Q ss_pred -------C----cC-chHHHHHHHHHHHH-hC-CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEE
Q 045279 503 -------Y----VG-ESELAVRTLFSRAR-TC-SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFV 568 (702)
Q Consensus 503 -------~----~g-~~~~~~~~~f~~a~-~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 568 (702)
+ ++ .++......|..-. .. .+-||++||+|.|..++ .+++.++. ++.. -...++++
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~--------~~vLy~lF-ewp~-lp~sr~iL 292 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS--------QTVLYTLF-EWPK-LPNSRIIL 292 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc--------cceeeeeh-hccc-CCcceeee
Confidence 1 11 22333344444322 22 36789999999999544 22333322 2222 24567889
Q ss_pred EEecCCCCccCccccC----CCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC--HHHHhhhhcCCCCCHHHHHH--
Q 045279 569 IGATNRPDVMDRAVLR----PGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD--LHTIAQSKFCENLSGADLAA-- 640 (702)
Q Consensus 569 I~atn~~~~ld~a~~r----~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~--~~~la~~~~~~~~sg~dl~~-- 640 (702)
|+..|..+.-|..+.| -+--...+.|++|+.++...|+...+.........+ ++..|. ...+-| ||+|.
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~Ar--Kvaa~S-GDlRkaL 369 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCAR--KVAAPS-GDLRKAL 369 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHH--HhccCc-hhHHHHH
Confidence 9999988765554432 123457899999999999999999998877654433 445552 233433 67775
Q ss_pred -HHHHHHHHHHHHHHhhcC-----CCCCCCCccccHHHHHHHHhhcCC
Q 045279 641 -MMNEAAMAALEDKLISSK-----SSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 641 -~~~~a~~~a~~~~~~~~~-----~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+|+.|...+-.+...... ..+......|..+|+..++.++-.
T Consensus 370 dv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 370 DVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 677787777666544311 011111235668888888887754
No 410
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.64 E-value=1.5e-07 Score=94.41 Aligned_cols=163 Identities=20% Similarity=0.264 Sum_probs=109.8
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe------EEEe
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF------YKIS 190 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~------~~i~ 190 (702)
+..+..++++++.+++...+.+.. +...-.+.|+|||||||||+...+.|..+..+. ..++
T Consensus 34 kyrP~~l~dv~~~~ei~st~~~~~-------------~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 34 KYRPPFLGIVIKQEPIWSTENRYS-------------GMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred CCCCchhhhHhcCCchhhHHHHhc-------------cCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 345568999999999999888764 333334899999999999999999999886531 1223
Q ss_pred chhhhcccccccHHHHHHHHHHHHh-------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYR-------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~-------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
+++-. ..+-. ..-...|..... ..+.++++||.|.|..+.++. |.+..+.+.
T Consensus 101 aSd~r--gid~v-r~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnA-----------LRRviek~t------- 159 (360)
T KOG0990|consen 101 ASDDR--GIDPV-RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNA-----------LRRVIEKYT------- 159 (360)
T ss_pred ccCcc--CCcch-HHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHH-----------HHHHHHHhc-------
Confidence 32211 11111 112234444432 256799999999998665543 333333322
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE 328 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~ 328 (702)
.++.++..+|++..+.|++++ ||. .+.|.+.+......++.+++......
T Consensus 160 ------------~n~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 160 ------------ANTRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred ------------cceEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhh
Confidence 246777788999999999999 984 47788888778888888777655443
No 411
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.62 E-value=8.5e-08 Score=107.25 Aligned_cols=175 Identities=17% Similarity=0.223 Sum_probs=105.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC-----cCchH----HHHHHHHHHHHhCCCeEEEEe
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY-----VGESE----LAVRTLFSRARTCSPCILFFD 529 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-----~g~~~----~~~~~~f~~a~~~~~~vl~iD 529 (702)
...++++.|.+||||+++|+++.... +.+|+.++|..+...+ .|... ..............++.||||
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ 235 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLD 235 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEE
Confidence 34568999999999999999998865 5699999998763221 11000 000000001112356899999
Q ss_pred CcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCccc-eEE
Q 045279 530 EVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRFG-KLL 592 (702)
Q Consensus 530 Eid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i 592 (702)
|++.+. ..++..|+..++... ...++.||++|+.. ..+.+.+.. |+. ..|
T Consensus 236 ei~~l~-----------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i 302 (463)
T TIGR01818 236 EIGDMP-----------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRI 302 (463)
T ss_pred chhhCC-----------HHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCccee
Confidence 999998 777888887776421 11256788888753 234444444 554 366
Q ss_pred EcCCCC--HHHHHHHHHHHhccCCCCC---CCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHHH
Q 045279 593 YVPLPT--PDERGLILEALARKKPIDD---SVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 593 ~~~~p~--~~~r~~il~~~~~~~~~~~---~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~a 649 (702)
.+|+.. .++...++..++....... ...+..-+...+ ..+|.| ++|+++|..|+..+
T Consensus 303 ~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 303 HLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 777666 4566667766655431110 011222221122 236766 99999999888644
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.62 E-value=9.7e-07 Score=98.55 Aligned_cols=77 Identities=22% Similarity=0.222 Sum_probs=53.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--------------C------------c--Cch
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK--------------Y------------V--GES 507 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------~------------~--g~~ 507 (702)
|+.++..+|+.||||+|||+++-.++... +.+.+.+...+-... + . ...
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67888889999999999999998887644 445566554332111 0 0 011
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 508 ELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 508 ~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
+..+..+.+.+....|.+|+||=+..+.
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 4455666677777789999999988775
No 413
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=3.4e-07 Score=83.05 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=48.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
..++|+||.||||||+++.+++.+. ..++++++.+.......... +...+.......+.++|||||+.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc
Confidence 4589999999999999999998876 78888888775442111111 2233333222356799999998774
No 414
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.61 E-value=1.9e-07 Score=103.86 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=100.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCc-----Cch-------HHHHHHHHHHHHhCCCeEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYV-----GES-------ELAVRTLFSRARTCSPCIL 526 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~-----g~~-------~~~~~~~f~~a~~~~~~vl 526 (702)
...+++++|++||||+++|+++.... +.+|+.++|..+..... |.. .......|.. ..+++|
T Consensus 161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl 237 (445)
T TIGR02915 161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTL 237 (445)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEE
Confidence 44678999999999999999998765 46899999987632211 100 0000011222 356899
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCccce
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRFGK 590 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf~~ 590 (702)
||||++.+. ..++..|+..++... ...++.||++|+.. ..+.+.+.. |+.
T Consensus 238 ~l~~i~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~- 303 (445)
T TIGR02915 238 FLDEIGDLP-----------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA- 303 (445)
T ss_pred EEechhhCC-----------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-
Confidence 999999999 788888888876421 11257888888764 234444433 443
Q ss_pred EEEcCCCCHHHHH----HHHHHHhccCCCC---CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 591 LLYVPLPTPDERG----LILEALARKKPID---DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 591 ~i~~~~p~~~~r~----~il~~~~~~~~~~---~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
.+.+..|...+|. .+++.++.+.... ....+..-+...+ ...|.| ++|++++..|+..
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~ 371 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIM 371 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 3344444444443 4555555442110 0111221111122 235655 9999999988864
No 415
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.61 E-value=7e-09 Score=95.51 Aligned_cols=81 Identities=23% Similarity=0.475 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhhhcccccccHH
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISATEVVSGVSGASEE 204 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l~~~~~g~~~~ 204 (702)
|....++++.+.+... .....+|+|+|++||||+++|++|..... .+|+.++|..+.
T Consensus 2 G~S~~~~~l~~~l~~~-----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL-----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH-----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCHHHHHHHHHHHHH-----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 4555666666655332 24457799999999999999999988764 366777777643
Q ss_pred HHHHHHHHHHhhCCceEEechhhHhhhcc
Q 045279 205 NIRDLFSKAYRTAPSIVFIDEIDAIASKR 233 (702)
Q Consensus 205 ~~~~~f~~a~~~~p~il~iDEid~l~~~~ 233 (702)
..+++.+ .+.+|||+|+|.+....
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~~ 85 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPEA 85 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHHH
Confidence 3455555 45599999999887543
No 416
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=1.6e-06 Score=91.32 Aligned_cols=200 Identities=19% Similarity=0.203 Sum_probs=128.1
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhhhcc-
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEVVSG- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l~~~- 197 (702)
..+.|.+..+..+.+++...+ ....+..+.+.|-||||||....-+...+. ...++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl---------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL---------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh---------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 578999999999998885543 456678899999999999999887755542 23478888865332
Q ss_pred --------------cccccHHHHHHHHHHHHhh--CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCC
Q 045279 198 --------------VSGASEENIRDLFSKAYRT--APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQP 261 (702)
Q Consensus 198 --------------~~g~~~~~~~~~f~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 261 (702)
..+....+....|+.-..+ .+-++++||+|.|....+. .|...++.-
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~-----------vLy~lFewp------ 283 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT-----------VLYTLFEWP------ 283 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc-----------eeeeehhcc------
Confidence 1112223344455544332 3568999999999854332 133322211
Q ss_pred CCCCCCCCCCCCCCCeEEEEEecCCCCCCCcc---ccC-CCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc--cHHH
Q 045279 262 GDQKSKSDASDSKPGYVLVIGATNRPDAVDPA---LRR-PGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF--DLVK 335 (702)
Q Consensus 262 ~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~a---l~r-~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~--~~~~ 335 (702)
.-...++++||.+|..+.-|.. |.. .+--...+.|++|+.++..+|+...+......... .+..
T Consensus 284 ----------~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~ 353 (529)
T KOG2227|consen 284 ----------KLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIEL 353 (529)
T ss_pred ----------cCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHH
Confidence 1123458999999987743332 222 11223668999999999999999888877654333 3666
Q ss_pred HHhhCCCCCH--HHHHHHHHHHHHHH
Q 045279 336 IARSTPGFVG--ADLAALANKAGNLA 359 (702)
Q Consensus 336 la~~t~g~~~--~dl~~l~~~a~~~a 359 (702)
.|+...+.+| |.+..+|+.|...+
T Consensus 354 ~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 354 CARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHH
Confidence 7788777766 33334455554433
No 417
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.59 E-value=2.9e-07 Score=103.08 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=105.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHH---------------HHhCC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSR---------------ARTCS 522 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~---------------a~~~~ 522 (702)
....++++.|++|||||++|+++.... +.+|+.++|+.+.... .-..+|.. .....
T Consensus 159 ~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~------~~~~lfg~~~g~~~~~~~~~~g~~~~a~ 232 (469)
T PRK10923 159 RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL------IESELFGHEKGAFTGANTIRQGRFEQAD 232 (469)
T ss_pred ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH------HHHHhcCCCCCCCCCCCcCCCCCeeECC
Confidence 345678999999999999999999876 5799999998763211 01112211 11224
Q ss_pred CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCC
Q 045279 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPG 586 (702)
Q Consensus 523 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~g 586 (702)
++.|||||++.+. ...+..|+..++... ...++.||+||+.. ..+.+.+..
T Consensus 233 ~Gtl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~-- 299 (469)
T PRK10923 233 GGTLFLDEIGDMP-----------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH-- 299 (469)
T ss_pred CCEEEEeccccCC-----------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--
Confidence 6799999999999 788888888876531 12346788888753 235555555
Q ss_pred ccc-eEEEcCCCCH--HHHHHHHHHHhccCCCC--CC-CCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 587 RFG-KLLYVPLPTP--DERGLILEALARKKPID--DS-VDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 587 Rf~-~~i~~~~p~~--~~r~~il~~~~~~~~~~--~~-~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
||. ..|.+|+... ++...++..++.+.... .. ..+..-+...+ ...|.| ++|+++++.|+..
T Consensus 300 ~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~ 370 (469)
T PRK10923 300 RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVM 370 (469)
T ss_pred HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 663 4555665543 34555666666542111 01 11211111122 236776 9999999988864
No 418
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.58 E-value=1.6e-06 Score=95.55 Aligned_cols=202 Identities=19% Similarity=0.246 Sum_probs=120.5
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEechhh
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISATEV 194 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~~~l 194 (702)
.|-+.+....+|...+...+.. -..+..+.+.|-||||||.+++.+-+.| ...++.||+-.+
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~--------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD--------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC--------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 3455555555555555332221 0123479999999999999999987765 246788887665
Q ss_pred hcc----------cccccHH------HHHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 195 VSG----------VSGASEE------NIRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 195 ~~~----------~~g~~~~------~~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
.+. +.|.... .+..-|.... ...++|++|||+|.|....+. .|...+++-
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd-----------VlYn~fdWp-- 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD-----------VLYNIFDWP-- 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH-----------HHHHHhcCC--
Confidence 432 2233211 1122222111 234689999999999976544 244444432
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCC----CCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcccCCccc
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPD----AVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLRVEGSFD 332 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~ 332 (702)
.....+++||+..|..+ .+.+...+ |++ ..+.|.+++-.+..+|+...+..........
T Consensus 536 --------------t~~~sKLvvi~IaNTmdlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~a 599 (767)
T KOG1514|consen 536 --------------TLKNSKLVVIAIANTMDLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKA 599 (767)
T ss_pred --------------cCCCCceEEEEecccccCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhH
Confidence 11345588888888755 23444444 543 5689999999999999998888774333323
Q ss_pred HHHHHhhCCCCCH--HHHHHHHHHHHHHHHHHH
Q 045279 333 LVKIARSTPGFVG--ADLAALANKAGNLAMKRI 363 (702)
Q Consensus 333 ~~~la~~t~g~~~--~dl~~l~~~a~~~a~~r~ 363 (702)
+..+++.....+| +-...+|++|...+-.+.
T Consensus 600 ielvarkVAavSGDaRraldic~RA~Eia~~~~ 632 (767)
T KOG1514|consen 600 IELVARKVAAVSGDARRALDICRRAAEIAEERN 632 (767)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhhhc
Confidence 3333443333333 445567777777665554
No 419
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.8e-07 Score=98.26 Aligned_cols=131 Identities=22% Similarity=0.390 Sum_probs=89.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC-------------------------CeEEEechhhhccccc-----ccHHH
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGV-------------------------PFYKISATEVVSGVSG-----ASEEN 205 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~-------------------------~~~~i~~~~l~~~~~g-----~~~~~ 205 (702)
+-++.+||+||+|+|||++|+.+|+.+.+ .|+.+++..-. ...| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 45677999999999999999999998742 12333321100 0001 12445
Q ss_pred HHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 206 IRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 206 ~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
++.+.+.+.. +...|++||+++.|.... .+.++..+++. +.++.+|
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a-----------~naLLk~LEep-------------------~~~~~~I 147 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQA-----------ANSLLKVLEEP-------------------PPQVVFL 147 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHHH-----------HHHHHHHHHhC-------------------cCCCEEE
Confidence 6666666543 334699999998886432 34577777753 1235677
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
.+|+.++.+.+.+++ |+ ..+.|++|+.++..+.+..
T Consensus 148 lvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 148 LVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred EEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 788888999999999 88 6799999999988777754
No 420
>PRK08116 hypothetical protein; Validated
Probab=98.56 E-value=2.9e-07 Score=94.40 Aligned_cols=123 Identities=23% Similarity=0.356 Sum_probs=73.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccc----ccHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSG----ASEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g----~~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
+.+++|+|+||||||+||.++++.+ +.+++.++..++...+.. ........+++... ...+|+|||+..-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 678889998876554321 11112223343332 33599999994321
Q ss_pred hcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC-CC----CCccccCCCCc---ce
Q 045279 231 SKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP-DA----VDPALRRPGRF---DR 302 (702)
Q Consensus 231 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~-~~----ld~al~r~~Rf---~~ 302 (702)
. .++. ...|...++.... .+ ..+|.|||.+ .. ++.++.+ |+ ..
T Consensus 192 ~------t~~~---~~~l~~iin~r~~-----------------~~-~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~ 242 (268)
T PRK08116 192 D------TEWA---REKVYNIIDSRYR-----------------KG-LPTIVTTNLSLEELKNQYGKRIYD--RILEMCT 242 (268)
T ss_pred C------CHHH---HHHHHHHHHHHHH-----------------CC-CCEEEECCCCHHHHHHHHhHHHHH--HHHHcCE
Confidence 1 1222 2334444443321 11 3467777763 33 4667776 74 34
Q ss_pred EEEeCCCCH
Q 045279 303 EIVLGVPDE 311 (702)
Q Consensus 303 ~i~~~~p~~ 311 (702)
.|.+..++.
T Consensus 243 ~v~~~g~d~ 251 (268)
T PRK08116 243 PVENEGKSY 251 (268)
T ss_pred EEEeeCcCh
Confidence 566666664
No 421
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.56 E-value=2.4e-06 Score=84.70 Aligned_cols=73 Identities=21% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 287 PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 287 ~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
|..++-.|+. |+ -+|...+++.++...||+..+....+....+ +..+......-+.+.-..|+..|...+.+|
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR 412 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 4467788888 88 6788899999999999999988877665544 344455445555666666666665555554
No 422
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.55 E-value=2.3e-07 Score=94.04 Aligned_cols=164 Identities=21% Similarity=0.321 Sum_probs=105.3
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhh
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVV 195 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~ 195 (702)
....|+.|+|.....+.+.+.... -.....++||.|++||||..+|++.-... ..+|+.+||+.+.
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k-----------~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQK-----------LAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHH-----------hhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 444688888888887777665522 12234569999999999999999875443 6899999999887
Q ss_pred ccc-----cccc--HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 196 SGV-----SGAS--EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 196 ~~~-----~g~~--~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
... .|.. ...-.++|+.|.++ .+|+|||-.|.+ ++...|+..+.+-. |-..|.
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp-----------~lQaKLLRFL~DGt-FRRVGe----- 327 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSP-----------RLQAKLLRFLNDGT-FRRVGE----- 327 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCH-----------HHHHHHHHHhcCCc-eeecCC-----
Confidence 652 2222 23347899998666 999999966654 34445777665311 001111
Q ss_pred CCCCCCCCeEEEEEecCCC--CCCCccccCCC---CcceEEEeCCCCHHHHHH
Q 045279 269 DASDSKPGYVLVIGATNRP--DAVDPALRRPG---RFDREIVLGVPDENARVQ 316 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~--~~ld~al~r~~---Rf~~~i~~~~p~~~er~~ 316 (702)
.....-+|+||+||..+ +.+...--|.+ |+ .++.+..|...+|.+
T Consensus 328 --e~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~ 377 (511)
T COG3283 328 --DHEVHVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQ 377 (511)
T ss_pred --cceEEEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcc
Confidence 11123469999999663 23333332222 55 667888888877655
No 423
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.55 E-value=3.9e-07 Score=92.41 Aligned_cols=166 Identities=22% Similarity=0.315 Sum_probs=105.0
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc---------cCcCchHHHHHHHHHHHHhCCCeEEEEeC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN---------KYVGESELAVRTLFSRARTCSPCILFFDE 530 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~---------~~~g~~~~~~~~~f~~a~~~~~~vl~iDE 530 (702)
...+|+.|.+||||-.+|++..... ..||+.++|+.+-. .-.|. .....+|+.| ..+.+|+||
T Consensus 227 DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~--~gk~GffE~A---ngGTVlLDe 301 (511)
T COG3283 227 DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGD--EGKKGFFEQA---NGGTVLLDE 301 (511)
T ss_pred CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCC--CCccchhhhc---cCCeEEeeh
Confidence 3568999999999999999887655 67999999976543 23332 2334788888 558999999
Q ss_pred cchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC--Cc-----cCccccCCCccceEEEc
Q 045279 531 VDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP--DV-----MDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 531 id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~--~~-----ld~a~~r~gRf~~~i~~ 594 (702)
|..+. .+++..||+.+.+-. -.-+|-|||||..+ +. +...+.- |++ ++.+
T Consensus 302 IgEmS-----------p~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl 367 (511)
T COG3283 302 IGEMS-----------PRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFY--RLN-VLTL 367 (511)
T ss_pred hhhcC-----------HHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHH--Hhh-eeee
Confidence 99998 889999999886521 22358999999654 22 3333333 553 5556
Q ss_pred CCCCHHHHH----HHHH----HHhccCCCCCC-CCHHHHhhhhcCCCCCH--HHHHHHHHHHHHH
Q 045279 595 PLPTPDERG----LILE----ALARKKPIDDS-VDLHTIAQSKFCENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 595 ~~p~~~~r~----~il~----~~~~~~~~~~~-~~~~~la~~~~~~~~sg--~dl~~~~~~a~~~ 648 (702)
..|...+|. -+.+ .+..+.+.... .+.+.+. .-...+|.| ++|.|++-+|+..
T Consensus 368 ~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~-~L~~y~WpGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 368 NLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLT-VLTRYAWPGNVRQLKNAIYRALTL 431 (511)
T ss_pred cCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHH-HHHHcCCCccHHHHHHHHHHHHHH
Confidence 666555543 2222 23333333221 1111111 111236766 8888888887744
No 424
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.54 E-value=1.7e-07 Score=104.58 Aligned_cols=200 Identities=18% Similarity=0.218 Sum_probs=115.8
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV 198 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~ 198 (702)
.+..++|.......+.+.+.. ......+++++|++||||+++|+++.... +.+|+.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~-----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK-----------IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cccceecccHHHhHHHHHHHH-----------HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH
Confidence 455688877777776665532 22345679999999999999999997654 5789999998874321
Q ss_pred -----cc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 045279 199 -----SG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265 (702)
Q Consensus 199 -----~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~ 265 (702)
.| .... ..+.|..+ ...+||||||+.|....+ ..|+..++.... ...++.
T Consensus 210 ~~~~lfg~~~~~~~~~~~~-~~g~~~~a---~~gtl~ld~i~~l~~~~q-----------~~L~~~l~~~~~-~~~~~~- 272 (457)
T PRK11361 210 LESELFGHEKGAFTGAQTL-RQGLFERA---NEGTLLLDEIGEMPLVLQ-----------AKLLRILQEREF-ERIGGH- 272 (457)
T ss_pred HHHHhcCCCCCCCCCCCCC-CCCceEEC---CCCEEEEechhhCCHHHH-----------HHHHHHHhcCcE-EeCCCC-
Confidence 11 1000 01233333 235999999999885432 346666654211 111111
Q ss_pred CCCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc-------
Q 045279 266 SKSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV------- 327 (702)
Q Consensus 266 ~~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~------- 327 (702)
...+.++++|+||+..- .+.+.+.. |+ ..+.+..|+..+|.+ ++..++.....
T Consensus 273 ------~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~ 343 (457)
T PRK11361 273 ------QTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RL-NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDII 343 (457)
T ss_pred ------ceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCC
Confidence 11234589999998631 34444444 55 357788888877755 33333332211
Q ss_pred CCcc-cHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 328 EGSF-DLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 328 ~~~~-~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.... .+..+....=-.+.++|++++..++..
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 0111 123333333233778888888877643
No 425
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.53 E-value=6.6e-07 Score=89.88 Aligned_cols=70 Identities=30% Similarity=0.480 Sum_probs=50.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc---HHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS---EENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~---~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
.+++|+|+||||||+|+.+||+.+ +..++.++..++........ ......+++... ...+|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 589999999999999999999988 67888888888765432221 111223444432 46799999997653
No 426
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.53 E-value=5.7e-07 Score=81.82 Aligned_cols=86 Identities=23% Similarity=0.343 Sum_probs=55.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh--------CCeEEEEeccccccc--------------CcC-ch-HHHHHHHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA--------GANFIHIKGPELLNK--------------YVG-ES-ELAVRTLFSRA 518 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~--------~~~~~~i~~~~l~~~--------------~~g-~~-~~~~~~~f~~a 518 (702)
...++++||||+|||++++.++..+ ..+++.++++...+. ... .+ ......+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4568999999999999999999987 677888876543311 111 12 22333444444
Q ss_pred HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 519 RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
......+|+|||+|.+. + ...++.+...++
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh
Confidence 55444699999999984 1 677777766665
No 427
>PRK08181 transposase; Validated
Probab=98.53 E-value=2e-07 Score=95.08 Aligned_cols=101 Identities=23% Similarity=0.377 Sum_probs=64.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
...+++|+||||||||+||.+++.++ +..++.++..+++..+... ........+... ..+.+|+|||++.+...
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 34679999999999999999999765 6778888888877653211 111223344433 25679999999876632
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
......+.+++....+ .. -+|.|||.+
T Consensus 183 ------~~~~~~Lf~lin~R~~---~~--s~IiTSN~~ 209 (269)
T PRK08181 183 ------QAETSVLFELISARYE---RR--SILITANQP 209 (269)
T ss_pred ------HHHHHHHHHHHHHHHh---CC--CEEEEcCCC
Confidence 1223444455543322 11 366688875
No 428
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.52 E-value=1e-06 Score=101.87 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||++.|++.+
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788889999999999999999999875
No 429
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.52 E-value=3.6e-06 Score=95.05 Aligned_cols=78 Identities=23% Similarity=0.222 Sum_probs=49.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc--------------------------CcC--ch
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK--------------------------YVG--ES 507 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--------------------------~~g--~~ 507 (702)
|++.+..++++||||+|||+++..++... +.+++.+...+-... +.. ..
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 67777889999999999999998877543 556655543321100 000 01
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 508 ELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 508 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
+..+..+.+.+....+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22233344445556789999999888763
No 430
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.52 E-value=2.2e-07 Score=85.58 Aligned_cols=108 Identities=25% Similarity=0.406 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
....+++|+|++||||+++|+++....+ .+|+.+++..+. ..+++.+ .++.|||+|+|.+.
T Consensus 19 ~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~-- 82 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS-- 82 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS---
T ss_pred CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC--
Confidence 4456799999999999999999998764 356666665532 3455555 66899999999999
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-C-C-----ccCccccCCCccc-eEEEcCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-P-D-----VMDRAVLRPGRFG-KLLYVPL 596 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-~-~-----~ld~a~~r~gRf~-~~i~~~~ 596 (702)
...+..|+..+.... ..++-+|++|.. + + .+++.+.. ||. ..|.+|+
T Consensus 83 ---------~~~Q~~L~~~l~~~~-~~~~RlI~ss~~~l~~l~~~~~~~~~L~~--~l~~~~i~lPp 137 (138)
T PF14532_consen 83 ---------PEAQRRLLDLLKRQE-RSNVRLIASSSQDLEELVEEGRFSPDLYY--RLSQLEIHLPP 137 (138)
T ss_dssp ---------HHHHHHHHHHHHHCT-TTTSEEEEEECC-CCCHHHHSTHHHHHHH--HCSTCEEEE--
T ss_pred ---------HHHHHHHHHHHHhcC-CCCeEEEEEeCCCHHHHhhccchhHHHHH--HhCCCEEeCCC
Confidence 777888887777543 344455555543 2 2 35555554 554 3445543
No 431
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=7.3e-07 Score=102.67 Aligned_cols=137 Identities=23% Similarity=0.310 Sum_probs=94.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCC-CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh-----
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGV-RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV----- 194 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l----- 194 (702)
..|+|+++++..|.+++...... ++- .+...++|.||.|+|||-+|+++|..+ ...++.++++++
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g------l~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG------LKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc------cCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 46799999999999888543221 111 356779999999999999999999997 457899999852
Q ss_pred ----hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 195 ----VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 195 ----~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
..+|.|..+. ..+.+..++...+|+||||||..-+ .+++.|+..+|+....-..|-.-
T Consensus 636 ligsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~GrltDs~Gr~V----- 697 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRLTDSHGREV----- 697 (898)
T ss_pred ccCCCcccccchhH--HHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCccccCCCcEe-----
Confidence 2235665544 4566666677779999999976543 35556777777543211111111
Q ss_pred CCCCCCeEEEEEecCCC
Q 045279 271 SDSKPGYVLVIGATNRP 287 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~ 287 (702)
.-++++||.|+|.-
T Consensus 698 ---d~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 698 ---DFKNAIFIMTSNVG 711 (898)
T ss_pred ---eccceEEEEecccc
Confidence 23569999999873
No 432
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.52 E-value=2.5e-06 Score=91.37 Aligned_cols=30 Identities=33% Similarity=0.443 Sum_probs=26.0
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.+++.+-|+||.|+||||+.++|+...
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~e 125 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGRE 125 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcCC
Confidence 356678889999999999999999998763
No 433
>PRK08181 transposase; Validated
Probab=98.50 E-value=4.8e-07 Score=92.24 Aligned_cols=73 Identities=27% Similarity=0.437 Sum_probs=50.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc-HHHHHHHHHHHHhhCCceEEechhhHhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS-EENIRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
...+++|+||||||||.|+.++++.+ +..+++++..++........ .......+... ..+.+|+|||++.+..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK 181 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC
Confidence 45679999999999999999998765 67788888888766532111 11222334333 2456999999977654
No 434
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.49 E-value=4.5e-07 Score=101.29 Aligned_cols=170 Identities=24% Similarity=0.390 Sum_probs=99.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC-----cCchHH-------HHHHHHHHHHhCCCeEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY-----VGESEL-------AVRTLFSRARTCSPCIL 526 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~-----~g~~~~-------~~~~~f~~a~~~~~~vl 526 (702)
...+++++|++||||+++|+++.... +.+|+.++|..+.... .|.... .....|.. ...++|
T Consensus 165 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl 241 (457)
T PRK11361 165 SQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFER---ANEGTL 241 (457)
T ss_pred CCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEE---CCCCEE
Confidence 34678999999999999999998764 5799999998763221 110000 00012222 346899
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCCC-------ccCccccCCCccce
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRPD-------VMDRAVLRPGRFGK 590 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~~-------~ld~a~~r~gRf~~ 590 (702)
||||++.+. ..++..|+..++... ...++.||++||..- .+.+.+.. |+.
T Consensus 242 ~ld~i~~l~-----------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~- 307 (457)
T PRK11361 242 LLDEIGEMP-----------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY--RLN- 307 (457)
T ss_pred EEechhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-
Confidence 999999999 778888888876421 113478888988641 23333333 442
Q ss_pred EEEcCCCCHHHHH----HHHHHHhccCCCC---CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 591 LLYVPLPTPDERG----LILEALARKKPID---DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 591 ~i~~~~p~~~~r~----~il~~~~~~~~~~---~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
.+.+..|...+|. .++..++.+.... ....+..-+...+ ...|.| ++|+++++.|+..
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~ 375 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVM 375 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh
Confidence 3445555555443 3445554432111 0112222222122 235655 8999999988753
No 435
>PRK12377 putative replication protein; Provisional
Probab=98.48 E-value=7.5e-07 Score=89.69 Aligned_cols=96 Identities=21% Similarity=0.321 Sum_probs=60.9
Q ss_pred CCccccc----CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 121 PRFQDLG----GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 121 ~~~~~i~----G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
.+|+++. |...++..+...+.... ....+++|+||||||||+||.+|++.+ +..++.++..+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~a~~~a~~~~-----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~ 139 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQAKSIADELM-----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPD 139 (248)
T ss_pred CCcCCcccCChhHHHHHHHHHHHHHHHH-----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHH
Confidence 3677764 44445555554443221 123689999999999999999999987 56788888887
Q ss_pred hhcccccccH--HHHHHHHHHHHhhCCceEEechhhHh
Q 045279 194 VVSGVSGASE--ENIRDLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 194 l~~~~~g~~~--~~~~~~f~~a~~~~p~il~iDEid~l 229 (702)
+......... .....++... ....+|+|||+...
T Consensus 140 l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 140 VMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred HHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 7654321110 0112333333 34569999999554
No 436
>PRK06526 transposase; Provisional
Probab=98.47 E-value=2.1e-07 Score=94.36 Aligned_cols=101 Identities=21% Similarity=0.289 Sum_probs=60.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
.+.+++|+||||||||++|.+++.++ +..+..++.++++...... ........+... ..+.+|+|||++.+...
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~~ 174 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPFE 174 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCCC
Confidence 35689999999999999999998875 5666666666655432110 001112222222 35689999999987532
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
.....++.+++..... .. -+|+|||.+
T Consensus 175 ------~~~~~~L~~li~~r~~---~~--s~IitSn~~ 201 (254)
T PRK06526 175 ------PEAANLFFQLVSSRYE---RA--SLIVTSNKP 201 (254)
T ss_pred ------HHHHHHHHHHHHHHHh---cC--CEEEEcCCC
Confidence 1223344455443321 11 266688875
No 437
>PRK15115 response regulator GlrR; Provisional
Probab=98.46 E-value=2.3e-07 Score=103.13 Aligned_cols=198 Identities=20% Similarity=0.240 Sum_probs=111.6
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccc--
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVS-- 199 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~-- 199 (702)
.++|.......+.+.+.. -.....+++|+|++|||||++|+++.... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~-----------~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~ 203 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARM-----------VAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLES 203 (444)
T ss_pred cccccCHHHHHHHHHHHh-----------hccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHH
Confidence 466666555555544422 12334579999999999999999997764 47999999987643211
Q ss_pred ---ccc-------HHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 200 ---GAS-------EENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 200 ---g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
|.. .....++|+.+ ...+||||||+.|....+ ..|+..++.... ...|+.
T Consensus 204 ~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~-~~~g~~----- 263 (444)
T PRK15115 204 ELFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAPLQ-----------VKLLRVLQERKV-RPLGSN----- 263 (444)
T ss_pred HhcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHHHH-----------HHHHHHHhhCCE-EeCCCC-----
Confidence 000 00011123333 235999999999885533 346666654221 111111
Q ss_pred CCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc----C---C-c
Q 045279 270 ASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV----E---G-S 330 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~----~---~-~ 330 (702)
...+.++++|++|+..- .+.+.+.. |+ ..+.+..|+..+|.+ ++..++..... . . .
T Consensus 264 --~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~ 338 (444)
T PRK15115 264 --RDIDIDVRIISATHRDLPKAMARGEFREDLYY--RL-NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFST 338 (444)
T ss_pred --ceeeeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh-ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCH
Confidence 11233589999998621 23333333 45 457888888888754 33444433211 0 1 1
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 331 FDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
..+..+....=-.+.++|++++..++..
T Consensus 339 ~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 339 DAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 1234444444234778888888877653
No 438
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.46 E-value=3.3e-07 Score=105.58 Aligned_cols=164 Identities=11% Similarity=0.105 Sum_probs=95.9
Q ss_pred cccCCcccchhhhHHHHHHHhhCh-H---H----HHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-------CeEEE
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFP-E---E----YEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-------ANFIH 493 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~-~---~----~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-------~~~~~ 493 (702)
..|.|.+.+|+.+.-.+....... . . +....++...++||+|+||||||.+|++++.... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 457788888876633221111000 0 0 0001234456899999999999999999998653 23333
Q ss_pred EecccccccCcCc-hHH-HH-HHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------
Q 045279 494 IKGPELLNKYVGE-SEL-AV-RTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------- 561 (702)
Q Consensus 494 i~~~~l~~~~~g~-~~~-~~-~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------- 561 (702)
+.+..... +.+. +.. .+ ...+. ....++++|||++.+. ...+..|+..|+...
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLv---lAdgGtL~IDEidkms-----------~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVV---LANGGVCCIDELDKCH-----------NESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEE---EcCCCeEEecchhhCC-----------HHHHHHHHHHHhCCEEEEecCCcc
Confidence 33322211 0000 000 00 00111 2345899999999998 777788888886532
Q ss_pred --CCCcEEEEEecCCCC-------------ccCccccCCCccceEEE-cCCCCHHHHHHHHHHH
Q 045279 562 --KRKGVFVIGATNRPD-------------VMDRAVLRPGRFGKLLY-VPLPTPDERGLILEAL 609 (702)
Q Consensus 562 --~~~~~~vI~atn~~~-------------~ld~a~~r~gRf~~~i~-~~~p~~~~r~~il~~~ 609 (702)
-..++.||+|+|... .|.+++++ |||.++. .+.|+.+.=..|..+.
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHH
Confidence 235789999999741 57788888 9997754 5566665444444443
No 439
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.46 E-value=1.3e-06 Score=99.22 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=42.4
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.++..|++++|++++++.|...+.. +.+++|+||||||||++++++++.++
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 3455899999999999988865621 24799999999999999999998764
No 440
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.46 E-value=1.6e-06 Score=87.15 Aligned_cols=179 Identities=26% Similarity=0.313 Sum_probs=92.9
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEec-hh--------
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV---PFYKISA-TE-------- 193 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~i~~-~~-------- 193 (702)
++|.+..++.|.+.+.. .+...++|+||.|+|||+|++.+.+.+.. ..++++. ..
T Consensus 1 F~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 67 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRS 67 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHH
Confidence 46888888888876622 24577999999999999999999998832 1111111 00
Q ss_pred h-------------hc-cc------------ccccHHHHHHHHHHHHhh-CCceEEechhhHhh-hcchhhhHHHHHHHH
Q 045279 194 V-------------VS-GV------------SGASEENIRDLFSKAYRT-APSIVFIDEIDAIA-SKRENLQREMERRIV 245 (702)
Q Consensus 194 l-------------~~-~~------------~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~-~~~~~~~~~~~~~~~ 245 (702)
+ .. .. .......+..++...... ...||+|||++.+. ..... ...+
T Consensus 68 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~------~~~~ 141 (234)
T PF01637_consen 68 FIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED------KDFL 141 (234)
T ss_dssp HHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT------HHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch------HHHH
Confidence 0 00 00 011234455566665543 34799999999998 22211 1233
Q ss_pred HHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC------CCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 246 TQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP------DAVDPALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 246 ~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~------~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
..|...++.... ..++.+|.++... ..-...+.. |+.. +.+++.+.++..+++.
T Consensus 142 ~~l~~~~~~~~~-----------------~~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~ 201 (234)
T PF01637_consen 142 KSLRSLLDSLLS-----------------QQNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLK 201 (234)
T ss_dssp HHHHHHHHH---------------------TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHH
T ss_pred HHHHHHHhhccc-----------------cCCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHH
Confidence 444444443111 1123333333321 122333444 7855 9999999999999999
Q ss_pred HhhcCcccC---CcccHHHHHhhCCCCC
Q 045279 320 VLTRNLRVE---GSFDLVKIARSTPGFV 344 (702)
Q Consensus 320 ~~~~~~~~~---~~~~~~~la~~t~g~~ 344 (702)
..+... .. ...++..+...+.|..
T Consensus 202 ~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 202 ELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HHHHCC-------HHHHHHHHHHHTT-H
T ss_pred HHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 877665 21 3345666777777643
No 441
>PRK12377 putative replication protein; Provisional
Probab=98.46 E-value=4.9e-07 Score=91.03 Aligned_cols=101 Identities=23% Similarity=0.299 Sum_probs=61.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCch--HHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGES--ELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~--~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
..+++|+||||||||+||.++|+.+ +..++.++.++++....... ......++... ....+|+|||++.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s 178 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET 178 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC
Confidence 3689999999999999999999987 66778888877765421100 00111233333 35679999999765421
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
.+..+++..++..-- .. ..-+|.|||..
T Consensus 179 ------~~~~~~l~~ii~~R~---~~-~~ptiitSNl~ 206 (248)
T PRK12377 179 ------KNEQVVLNQIIDRRT---AS-MRSVGMLTNLN 206 (248)
T ss_pred ------HHHHHHHHHHHHHHH---hc-CCCEEEEcCCC
Confidence 223444555544322 11 12245679864
No 442
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.45 E-value=3.5e-07 Score=92.82 Aligned_cols=69 Identities=30% Similarity=0.462 Sum_probs=51.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcC-----chHHHHHHHHHHHHhCCCeEEEEeCcch
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVG-----ESELAVRTLFSRARTCSPCILFFDEVDA 533 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g-----~~~~~~~~~f~~a~~~~~~vl~iDEid~ 533 (702)
.+.+++|+||||||||+||-++++++ |..++.++.++++...-. ..+..+... . ....||+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l--~~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---L--KKVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---h--hcCCEEEEecccC
Confidence 67899999999999999999999977 788889998888765221 122222111 1 2457999999987
Q ss_pred hh
Q 045279 534 LT 535 (702)
Q Consensus 534 l~ 535 (702)
..
T Consensus 179 ~~ 180 (254)
T COG1484 179 EP 180 (254)
T ss_pred cc
Confidence 65
No 443
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.45 E-value=6e-07 Score=90.17 Aligned_cols=100 Identities=23% Similarity=0.311 Sum_probs=65.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc---hHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE---SELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~---~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
.+++|+|+||||||+++.++|..+ +..++.++.+++...+... .......++.... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999987 7788888888877543221 1112233444432 567999999987642
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
..+...++.+++..-- ..+.-+|.+||..
T Consensus 177 -----s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 177 -----SRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred -----CHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 2333456666654321 1122466688864
No 444
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.44 E-value=3.8e-06 Score=90.13 Aligned_cols=169 Identities=18% Similarity=0.264 Sum_probs=93.6
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc-------------ccccCcCchHHHHHHHHHHHH------------
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE-------------LLNKYVGESELAVRTLFSRAR------------ 519 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~-------------l~~~~~g~~~~~~~~~f~~a~------------ 519 (702)
-+||+||+||||||+++.|+.++|..+++...+- +...++...-........++.
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~ 191 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDL 191 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccccc
Confidence 4688999999999999999999999888765221 111111111111111222221
Q ss_pred hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC--CCccCccccCC------CccceE
Q 045279 520 TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR--PDVMDRAVLRP------GRFGKL 591 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~--~~~ld~a~~r~------gRf~~~ 591 (702)
...+.+||+||+=..+... ..+.+...|.++-...... +||+.|+. ++..++..+.| -|+. .
T Consensus 192 ~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~s~g~~P--lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~ 261 (634)
T KOG1970|consen 192 RTDKKLILVEDLPNQFYRD-------DSETFREVLRLYVSIGRCP--LIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-N 261 (634)
T ss_pred ccCceEEEeeccchhhhhh-------hHHHHHHHHHHHHhcCCCc--EEEEEeccccCCCcchhhhchhhhhhccCcc-e
Confidence 1356699999987666331 1344444444443333333 34444432 23222222211 1564 6
Q ss_pred EEcCCCCHHHHHHHHHHHhccCCCC-------CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 592 LYVPLPTPDERGLILEALARKKPID-------DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 592 i~~~~p~~~~r~~il~~~~~~~~~~-------~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
|.|.+-...-..+.+...+...... ....++.++ .-+|||||.+|+...+.+
T Consensus 262 IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~------~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 262 ISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELIC------QGSGGDIRSAINSLQLSS 320 (634)
T ss_pred EeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHH------HhcCccHHHHHhHhhhhc
Confidence 7777777766666666665543222 123344444 237799999999887765
No 445
>PRK09183 transposase/IS protein; Provisional
Probab=98.44 E-value=3.2e-07 Score=93.60 Aligned_cols=74 Identities=28% Similarity=0.436 Sum_probs=50.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
..+.+++|+||||||||+++.+++..+ +..+..++..++...+... ....+...+.... ..+.+|+|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccCC
Confidence 345689999999999999999998764 6677777777766433211 1112334454432 367899999998764
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.44 E-value=1.2e-06 Score=86.09 Aligned_cols=85 Identities=34% Similarity=0.509 Sum_probs=51.9
Q ss_pred ccCcCc--hHHHHHHHHHHHHhCCCeEEEEeC----cchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 501 NKYVGE--SELAVRTLFSRARTCSPCILFFDE----VDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 501 ~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDE----id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
++|..+ +....|..+.+|....|.||++|| +|.+. +..+++.|..+.. ..+..|++.|+.
T Consensus 125 ~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT-----------R~~lq~~l~~lw~---~~~~TvllVTHd 190 (248)
T COG1116 125 DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT-----------REELQDELLRLWE---ETRKTVLLVTHD 190 (248)
T ss_pred hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH-----------HHHHHHHHHHHHH---hhCCEEEEEeCC
Confidence 345544 334457778888889999999999 66666 4445554444432 223456667876
Q ss_pred CC---ccCcccc----CCCccceEEEcCCCCH
Q 045279 575 PD---VMDRAVL----RPGRFGKLLYVPLPTP 599 (702)
Q Consensus 575 ~~---~ld~a~~----r~gRf~~~i~~~~p~~ 599 (702)
.+ .+-..+. +|+|+-..+.+++|.+
T Consensus 191 i~EAv~LsdRivvl~~~P~~i~~~~~i~l~rp 222 (248)
T COG1116 191 VDEAVYLADRVVVLSNRPGRIGEELEIDLPRP 222 (248)
T ss_pred HHHHHhhhCEEEEecCCCcceeeEEecCCCCC
Confidence 43 1111111 5677777777777754
No 447
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.42 E-value=3.3e-07 Score=100.41 Aligned_cols=194 Identities=21% Similarity=0.289 Sum_probs=119.1
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCeEEEechhhhcc-------
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET--GVPFYKISATEVVSG------- 197 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l--~~~~~~i~~~~l~~~------- 197 (702)
++.+...+.+...+.. -.....++++.|+|||||-.+++++-+.. ..+|+.+||..+...
T Consensus 316 ~~~d~s~a~l~rk~~r-----------v~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELF 384 (606)
T COG3284 316 PLLDPSRATLLRKAER-----------VAATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELF 384 (606)
T ss_pred cccCHHHHHHHHHHHH-----------HhhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHh
Confidence 4556666665554422 12345679999999999999999995554 579999999987654
Q ss_pred ------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCC-CCCCCCCCC
Q 045279 198 ------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQP-GDQKSKSDA 270 (702)
Q Consensus 198 ------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~-~~~~~~~~~ 270 (702)
+.|...+..+..+++|..+ .||+|||..|+-. +...||..+.+... .+ |+..
T Consensus 385 Gy~~GafTga~~kG~~g~~~~A~gG---tlFldeIgd~p~~-----------~Qs~LLrVl~e~~v--~p~g~~~----- 443 (606)
T COG3284 385 GYVAGAFTGARRKGYKGKLEQADGG---TLFLDEIGDMPLA-----------LQSRLLRVLQEGVV--TPLGGTR----- 443 (606)
T ss_pred ccCccccccchhccccccceecCCC---ccHHHHhhhchHH-----------HHHHHHHHHhhCce--eccCCcc-----
Confidence 2333445556666776555 9999999777643 33457777775332 22 2221
Q ss_pred CCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH---HHHHhhcCcc---cCCccc--HHH
Q 045279 271 SDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ---ILSVLTRNLR---VEGSFD--LVK 335 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~---Il~~~~~~~~---~~~~~~--~~~ 335 (702)
.+-+|.||+||+..- .+-..|.- |+ ..+.+..|+..+|.. .+..++++.. ...+.+ ...
T Consensus 444 ---~~vdirvi~ath~dl~~lv~~g~fredLyy--rL-~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l 517 (606)
T COG3284 444 ---IKVDIRVIAATHRDLAQLVEQGRFREDLYY--RL-NAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARL 517 (606)
T ss_pred ---eeEEEEEEeccCcCHHHHHHcCCchHHHHH--Hh-cCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHH
Confidence 233599999998732 12222222 44 446777887766654 3333333322 111222 334
Q ss_pred HHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 336 IARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 336 la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
++...+| +.++|.++++.++.++
T Consensus 518 ~~~~WPG-Nirel~~v~~~~~~l~ 540 (606)
T COG3284 518 LAYRWPG-NIRELDNVIERLAALS 540 (606)
T ss_pred HhCCCCC-cHHHHHHHHHHHHHcC
Confidence 5666777 7788888888776543
No 448
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.42 E-value=3e-06 Score=98.21 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=26.7
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||+++|++..
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456778889999999999999999999875
No 449
>PF13173 AAA_14: AAA domain
Probab=98.42 E-value=1.1e-06 Score=79.75 Aligned_cols=120 Identities=21% Similarity=0.254 Sum_probs=68.3
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhC--CeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAG--ANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE 541 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~ 541 (702)
..++++||.|||||++++.++..+. .+++.++..+.......... +...+.+.....+.+|||||++.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 4578999999999999999998876 77788887665432111100 22223222222568999999998741
Q ss_pred CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc--cccCCCccceEEEcCCCCHHH
Q 045279 542 GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR--AVLRPGRFGKLLYVPLPTPDE 601 (702)
Q Consensus 542 ~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~--a~~r~gRf~~~i~~~~p~~~~ 601 (702)
....+..+. +. ..++-||+|+.....+.. +-.-+||+. .+.+.+.+..|
T Consensus 76 ----~~~~lk~l~---d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 ----WEDALKFLV---DN---GPNIKIILTGSSSSLLSKDIAESLAGRVI-EIELYPLSFRE 126 (128)
T ss_pred ----HHHHHHHHH---Hh---ccCceEEEEccchHHHhhcccccCCCeEE-EEEECCCCHHH
Confidence 123333333 21 123444444443322211 112256875 66777777655
No 450
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.41 E-value=2.5e-07 Score=100.96 Aligned_cols=34 Identities=26% Similarity=0.240 Sum_probs=29.0
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
+-+.++.-+-|+|++|||||+++++|-+.+....
T Consensus 30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~ 63 (539)
T COG1123 30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEGG 63 (539)
T ss_pred EEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC
Confidence 3567888899999999999999999988876553
No 451
>PRK15115 response regulator GlrR; Provisional
Probab=98.41 E-value=1.5e-06 Score=96.65 Aligned_cols=166 Identities=23% Similarity=0.352 Sum_probs=98.4
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHH---------------HHhCCCe
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSR---------------ARTCSPC 524 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~---------------a~~~~~~ 524 (702)
...++++|++|||||++|+++.... +.+|+.++|..+..... -..+|.. ......+
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 230 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGG 230 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCC
Confidence 4568999999999999999998875 57999999987632211 1112211 1123458
Q ss_pred EEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCcc
Q 045279 525 ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRF 588 (702)
Q Consensus 525 vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf 588 (702)
+|||||++.|. ...+..|+..++... ...++.+|++|+.. ..+.+.+.. |+
T Consensus 231 tl~l~~i~~l~-----------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~--~l 297 (444)
T PRK15115 231 TLFLDEIGDMP-----------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYY--RL 297 (444)
T ss_pred EEEEEccccCC-----------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHH--hh
Confidence 99999999999 778888888876422 11257888888853 022222222 33
Q ss_pred ceEEEcCCCCHHHHH----HHHHHHhccCCC--C-CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 589 GKLLYVPLPTPDERG----LILEALARKKPI--D-DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 589 ~~~i~~~~p~~~~r~----~il~~~~~~~~~--~-~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
. .+.+..|...+|. .+++.++.+... . ....+..-|...+ ...|.| ++|+++++.|+..
T Consensus 298 ~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 298 N-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred c-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 2 3445555555553 345555543211 0 0011211111121 235555 8999999988753
No 452
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.40 E-value=8.7e-07 Score=93.09 Aligned_cols=71 Identities=21% Similarity=0.391 Sum_probs=49.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc---hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE---SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~---~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
..+++|+||||||||+||.++|+++ +..++.++..+++..+... ........+.... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 3789999999999999999999987 7788888888876643110 0011111233332 45799999998764
No 453
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=3.2e-06 Score=96.10 Aligned_cols=340 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred ccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec----------------------------------------
Q 045279 152 WLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA---------------------------------------- 191 (702)
Q Consensus 152 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~---------------------------------------- 191 (702)
.+.+.++..+.|+||+|+|||||++.|++.+...--.+..
T Consensus 21 sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~ 100 (530)
T PRK15064 21 SVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERD 100 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHH
Q ss_pred -------------------------------------------------hhhhcccccccHHHHHHHHHHHHhhCCceEE
Q 045279 192 -------------------------------------------------TEVVSGVSGASEENIRDLFSKAYRTAPSIVF 222 (702)
Q Consensus 192 -------------------------------------------------~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~ 222 (702)
...+..+.|...+ +-.+..+....|.+|+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q--rv~lA~aL~~~p~lLl 178 (530)
T PRK15064 101 RIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL--RVLLAQALFSNPDILL 178 (530)
T ss_pred HHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH--HHHHHHHHhcCCCEEE
Q ss_pred echhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcce
Q 045279 223 IDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR 302 (702)
Q Consensus 223 iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~ 302 (702)
+||. .+..+......+..++.... ..||.+|...+.+..-.-+--.+..
T Consensus 179 LDEP-------t~~LD~~~~~~l~~~l~~~~------------------------~tiiivsHd~~~~~~~~d~i~~l~~ 227 (530)
T PRK15064 179 LDEP-------TNNLDINTIRWLEDVLNERN------------------------STMIIISHDRHFLNSVCTHMADLDY 227 (530)
T ss_pred EcCC-------CcccCHHHHHHHHHHHHhCC------------------------CeEEEEeCCHHHHHhhcceEEEEeC
Q ss_pred EEE-eCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccC
Q 045279 303 EIV-LGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHS 381 (702)
Q Consensus 303 ~i~-~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~ 381 (702)
--. +...+.++....-........-.........+ .+...+..+...+.........
T Consensus 228 g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~------------- 285 (530)
T PRK15064 228 GELRVYPGNYDEYMTAATQARERLLADNAKKKAQIA---------ELQSFVSRFSANASKAKQATSR------------- 285 (530)
T ss_pred CEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhccchhhHHHHHH-------------
Q ss_pred cccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCC
Q 045279 382 DDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVD 461 (702)
Q Consensus 382 ~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~ 461 (702)
.+.+...............+...+..-.......-.+.. +...+.....+..+.+.
T Consensus 286 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~l~~is~~ 341 (530)
T PRK15064 286 -----------------------AKQIDKIKLEEVKPSSRQNPFIRFEQDKKLHRNALEVEN-LTKGFDNGPLFKNLNLL 341 (530)
T ss_pred -----------------------HHHHhhccccccCCccccCceeeCCCCCCCCCceEEEEe-eEEeeCCceeecCcEEE
Q ss_pred CCcc--eEEEcCCCCChhHHHHHHHHHh--CCeEEEEecccccccCcCchHHHH--------------------------
Q 045279 462 LETG--FLLYGPPGCGKTLIAKAVANEA--GANFIHIKGPELLNKYVGESELAV-------------------------- 511 (702)
Q Consensus 462 ~~~~--~ll~Gp~GtGKT~la~~la~~~--~~~~~~i~~~~l~~~~~g~~~~~~-------------------------- 511 (702)
...| +.|.||+|+|||||+++++... ...-+.+....-++.........+
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 421 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGT 421 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHH
Q ss_pred ------------------------HHHHHHHHhCCCeEEEEeC----cchhhcccCCCCchHHHHHHHHHHHhhhCCCCC
Q 045279 512 ------------------------RTLFSRARTCSPCILFFDE----VDALTTKRGKEGGWVVERLLNQLLIELDGADKR 563 (702)
Q Consensus 512 ------------------------~~~f~~a~~~~~~vl~iDE----id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 563 (702)
|..+.+|....|.||++|| +|... .+.+..++..+
T Consensus 422 l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~-----------~~~l~~~l~~~------ 484 (530)
T PRK15064 422 LGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES-----------IESLNMALEKY------ 484 (530)
T ss_pred HHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHH-----------HHHHHHHHHHC------
Q ss_pred CcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 564 KGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 564 ~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
...||++|+.++.+.. -+|+++.+
T Consensus 485 -~~tvi~vsHd~~~~~~------~~d~i~~l 508 (530)
T PRK15064 485 -EGTLIFVSHDREFVSS------LATRIIEI 508 (530)
T ss_pred -CCEEEEEeCCHHHHHH------hCCEEEEE
No 454
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.39 E-value=6.6e-07 Score=85.88 Aligned_cols=70 Identities=30% Similarity=0.587 Sum_probs=46.8
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc-HHHHHHHHHHHHhhCCceEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS-EENIRDLFSKAYRTAPSIVFIDEID 227 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid 227 (702)
..+.|++|+||||||||.||.++++++ +.++..++..++........ .......+.... ...+|+|||+-
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccc
Confidence 346789999999999999999998876 78888999998876532111 111223344433 34699999994
No 455
>PRK06526 transposase; Provisional
Probab=98.38 E-value=5.4e-07 Score=91.38 Aligned_cols=73 Identities=23% Similarity=0.378 Sum_probs=48.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc-HHHHHHHHHHHHhhCCceEEechhhHhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS-EENIRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
.+.+++|+||||||||++|.+|+..+ +..+..++..++........ ...+...+... ..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC
Confidence 45789999999999999999998775 56666677776654432110 01112222222 3457999999987653
No 456
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.36 E-value=1.8e-06 Score=90.68 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=48.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccc---cHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGA---SEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~---~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
..+++|+||||||||+|+.+||+++ +..+++++..++....... ........++... ...+|+|||+....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~ 259 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK 259 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC
Confidence 3789999999999999999999987 6788889888876543211 0111111233332 34699999996543
No 457
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.35 E-value=6.2e-07 Score=93.48 Aligned_cols=102 Identities=24% Similarity=0.400 Sum_probs=64.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
...|++|+||+|||||+|+.++|+++ +..+..+..++++..+... ....+...+.... ...||+|||+.....
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~- 231 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM- 231 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc-
Confidence 45789999999999999999999987 6777778877776543211 0111233343332 457999999976541
Q ss_pred cCCCCchHHHHHHHHHHHh-hhCCCCCCcEEEEEecCCC
Q 045279 538 RGKEGGWVVERLLNQLLIE-LDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~-l~~~~~~~~~~vI~atn~~ 575 (702)
..+...+++..++.. +. .+.-.|.|||.+
T Consensus 232 ----s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 232 ----SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred ----cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 112223455555542 22 123466688864
No 458
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.35 E-value=4.6e-07 Score=86.93 Aligned_cols=73 Identities=33% Similarity=0.558 Sum_probs=47.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
..+.|++|+||||||||++|.+++.++ +..+..++.++++...... ........+.... ...+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS-
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee
Confidence 346789999999999999999999866 7888888888887542211 0111223344333 45799999987543
No 459
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=2.6e-06 Score=87.09 Aligned_cols=119 Identities=13% Similarity=0.131 Sum_probs=85.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe----------------EEEEecccccccCcCchHHHHHHHHHHHH----h
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN----------------FIHIKGPELLNKYVGESELAVRTLFSRAR----T 520 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~----------------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~ 520 (702)
+.+..+||+||.|+||+.+|..+|..+-+. +..+.+.. .+.. -+-..+|.+.+.+. .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 456678999999999999999999876321 11121100 0000 12344566655543 2
Q ss_pred CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCC
Q 045279 521 CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPT 598 (702)
Q Consensus 521 ~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~ 598 (702)
....|++||++|.+. ....|.||..|+. +..++++|..|+.++.+-|.+++ |+- .+.|+++.
T Consensus 94 ~~~kv~ii~~ad~mt-----------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~~ 155 (290)
T PRK05917 94 SPYKIYIIHEADRMT-----------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPMEE 155 (290)
T ss_pred CCceEEEEechhhcC-----------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccchh
Confidence 455799999999999 8999999999996 45677888889999999999988 884 66777553
No 460
>PRK09183 transposase/IS protein; Provisional
Probab=98.35 E-value=1.3e-06 Score=89.12 Aligned_cols=76 Identities=29% Similarity=0.478 Sum_probs=51.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccccc-HHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGAS-EENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~-~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
+..+.+++|+||||||||+|+.+|+..+ +..+..+++.++...+.... ...+..++... ...+.+++|||++.+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3456789999999999999999997664 66777788777654432111 11233445443 2456799999997654
Q ss_pred h
Q 045279 231 S 231 (702)
Q Consensus 231 ~ 231 (702)
.
T Consensus 178 ~ 178 (259)
T PRK09183 178 F 178 (259)
T ss_pred C
Confidence 3
No 461
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=98.33 E-value=1.1e-05 Score=100.45 Aligned_cols=340 Identities=17% Similarity=0.260 Sum_probs=171.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechhhhcccccccHHHHHHHHHHHH-h----------hCCceEEechh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETG-VPFYKISATEVVSGVSGASEENIRDLFSKAY-R----------TAPSIVFIDEI 226 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~-~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-~----------~~p~il~iDEi 226 (702)
..++++||+|+|||.++........ ..++.++.+...++ .....++..-. . +...++|+||+
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~------~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddi 201 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSS------ELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDI 201 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccH------HHHHHHHHHHHHHhcccCCCCCCCceeEEEEecc
Confidence 6799999999999998887765543 23233444432221 11112111111 0 11138999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC----CCCccccCCCCcce
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD----AVDPALRRPGRFDR 302 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~~ 302 (702)
+.-... ..+.+....++.++-+...+++... ... ..--+|++++++|++. .+++.+.| .| .
T Consensus 202 nmp~~~------~yg~q~~~~~lrq~~e~~g~~~~~~-~~~-----~~i~~i~~~~a~~~~~~gr~~i~~r~~r--~f-~ 266 (1395)
T KOG3595|consen 202 NMPALD------KYGDQPPIELLRQMLEHGGFYDRKK-SEW-----VEIENVQLVGAMNPPGGGRNDITERFLR--HF-L 266 (1395)
T ss_pred CCchhh------hcCCccHHHHHHHHHHhceeecccc-cce-----eEEeeeEEEeecCCCCCccCcccHHHHH--He-e
Confidence 754322 2223334456666666555555443 211 1234589999999754 57788887 77 7
Q ss_pred EEEeCCCCHHHHHHHHHHhhcCcccCCcc---cHHHHH------------hhC-------CCCCHHHHHHHHHHHHHH--
Q 045279 303 EIVLGVPDENARVQILSVLTRNLRVEGSF---DLVKIA------------RST-------PGFVGADLAALANKAGNL-- 358 (702)
Q Consensus 303 ~i~~~~p~~~er~~Il~~~~~~~~~~~~~---~~~~la------------~~t-------~g~~~~dl~~l~~~a~~~-- 358 (702)
.+.+..|+.+..-.|+..++..+...... ....+. ... --|+.+|+..++......
T Consensus 267 ~~~~~~~~~~sl~~if~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~ 346 (1395)
T KOG3595|consen 267 IVSLNYPSQESLTQIFNTILTGHLRFAPAFRTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVS 346 (1395)
T ss_pred eEeeCCCChhhHHHHHHHHHhcccCccHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCc
Confidence 78999999999999999887766320000 011111 111 114556665544322110
Q ss_pred -------HHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCcccccc
Q 045279 359 -------AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDV 431 (702)
Q Consensus 359 -------a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i 431 (702)
...+.+.....+...+.+.+....+|.. +.+. ......+.... ...|..... ........|..+
T Consensus 347 ~~~~~~~~l~~~~~~e~~rv~~drlv~~~~~~~~~-----~~~~--~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~y~~~ 417 (1395)
T KOG3595|consen 347 EALLTLEDLIRLWVHEAIRVFADRLVDDEDRQWFD-----KKLQ--EVLLKLFEADS-LQMPLLYGD-FRSESHKIYEEV 417 (1395)
T ss_pred HhhccHHHHHHHHHHHHHHhhhhhcccHHHHHHHH-----HHHH--HHHHHHhhhhh-hcCCceeee-cccccccccCch
Confidence 0111111111111111111111111100 0000 00001111110 000100000 000000334555
Q ss_pred CCcccchhhhHHHHH----------------HHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEe
Q 045279 432 GGLDYLRHEFDRYIV----------------RRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIK 495 (702)
Q Consensus 432 ~g~~~~k~~l~~~i~----------------~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~ 495 (702)
...+.+...+...+. ....|.....++-..+..+.++.|-.|+||+++.+..+...+..++.+.
T Consensus 418 ~~~~~l~~~~~~~l~~~~~~~~~~~~lvlf~~~~~h~~ri~ril~~~~g~~llvgv~g~gkqsl~r~~~~~~~~~~fq~~ 497 (1395)
T KOG3595|consen 418 LSVELLRGVLEAYLKQFNIEEIRPMHLVLFRDAIEHVLRIDRILRQPRGHALLVGVGGSGKQSLTRLAAFINGLSVFQIE 497 (1395)
T ss_pred HhHHHHHHHHHHHHHHHhhhccCCCceeeeHHHhhhhhhhHHHhcCCCccEEEeecCCCCcccHHHHHHhhccccceeee
Confidence 554444444433322 2234555556666778899999999999999999999999999888887
Q ss_pred cccccccCcCchHHHHHHHHHHHHhCC-CeEEEEeC
Q 045279 496 GPELLNKYVGESELAVRTLFSRARTCS-PCILFFDE 530 (702)
Q Consensus 496 ~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDE 530 (702)
.....+ .......++.++..+.... +.++.++|
T Consensus 498 ~~~~y~--~~~~~~dl~~~~r~~g~~~~~~~f~~~~ 531 (1395)
T KOG3595|consen 498 ITRSYN--IEDFREDLKAILRKAGLKNKETVFILTD 531 (1395)
T ss_pred ccccCc--HHHHHHHHHHHHHHhccCCCceEEeech
Confidence 654322 1223444555555554333 33455666
No 462
>PRK06921 hypothetical protein; Provisional
Probab=98.33 E-value=4.7e-06 Score=85.35 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=46.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcch
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDA 533 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 533 (702)
...+++|+||||||||+|+.++|+++ +..++.+...+++...... .......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 45789999999999999999999976 5667777766655432111 11111222222 3457999999954
No 463
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.33 E-value=4.2e-06 Score=76.07 Aligned_cols=74 Identities=22% Similarity=0.384 Sum_probs=46.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh--------CCCeEEEechhhhcc--------------ccc-ccHHHHHHHHHHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET--------GVPFYKISATEVVSG--------------VSG-ASEENIRDLFSKA 213 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l--------~~~~~~i~~~~l~~~--------------~~g-~~~~~~~~~f~~a 213 (702)
....++++||||+|||++++.++..+ ..+++.+++...... ... .....+...+...
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35679999999999999999999987 677788877764411 111 2223333334443
Q ss_pred HhhCC-ceEEechhhHhh
Q 045279 214 YRTAP-SIVFIDEIDAIA 230 (702)
Q Consensus 214 ~~~~p-~il~iDEid~l~ 230 (702)
..... .+|+|||+|.+.
T Consensus 83 l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHCTEEEEEEETTHHHH
T ss_pred HHhcCCeEEEEeChHhcC
Confidence 34333 499999999875
No 464
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.32 E-value=1.4e-06 Score=97.56 Aligned_cols=200 Identities=19% Similarity=0.209 Sum_probs=112.5
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc-
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV- 198 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~- 198 (702)
+..++|......++.+.+... .....++++.|++||||+++|+++.... +.+|+.++|..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~-----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~ 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL-----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH-----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH
Confidence 456888888777777665331 2334579999999999999999997764 4689999998764321
Q ss_pred ----cc--------ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 199 ----SG--------ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 199 ----~g--------~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
.| .... ..+.|..+ .+++||||||+.|....+ ..|+..++.... ...++.
T Consensus 202 ~~~lfg~~~~~~~~~~~~-~~g~~~~a---~~gtl~l~ei~~l~~~~q-----------~~ll~~l~~~~~-~~~~~~-- 263 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTR-RQGRFEQA---DGGTLFLDEIGDMPLDAQ-----------TRLLRVLADGEF-YRVGGR-- 263 (463)
T ss_pred HHHhcCCCCCCCCCcccC-CCCcEEEC---CCCeEEEEchhhCCHHHH-----------HHHHHHHhcCcE-EECCCC--
Confidence 11 1000 01122222 345999999998875432 345555553211 001111
Q ss_pred CCCCCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHH----HHHHHHhhcCcccC-------
Q 045279 267 KSDASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENAR----VQILSVLTRNLRVE------- 328 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er----~~Il~~~~~~~~~~------- 328 (702)
...+.++.+|++|+..- .+.+.|.. |+ ..+.+..|+..+| ..++..++......
T Consensus 264 -----~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~ 335 (463)
T TIGR01818 264 -----TPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKL 335 (463)
T ss_pred -----ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--Hh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCC
Confidence 11223588999987632 33444544 55 3355666665444 34444444332111
Q ss_pred C-cccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 329 G-SFDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 329 ~-~~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
. ...+..+....=-.+.++|++++..++..+
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVMA 367 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 0 111333333322236788999888877654
No 465
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.32 E-value=2e-06 Score=87.38 Aligned_cols=73 Identities=32% Similarity=0.517 Sum_probs=50.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccHH-HHHHHHHHHHhhCCceEEechhhHhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASEE-NIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
.+.+++|+||||||||.||.+|++++ |.++..++..+++......... ....-+... -....+|+|||+-...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCcc
Confidence 56889999999999999999999887 6788899998887663322221 111111221 1234599999995443
No 466
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.31 E-value=9.3e-06 Score=80.98 Aligned_cols=142 Identities=15% Similarity=0.215 Sum_probs=78.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL 236 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~ 236 (702)
...+..++||+|||||..++.+|+.+|.+++.++|++-. ....+..+|.-+... .+++.+||++.+....-..
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~------~~~~l~ril~G~~~~-GaW~cfdefnrl~~~vLS~ 103 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM------DYQSLSRILKGLAQS-GAWLCFDEFNRLSEEVLSV 103 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSSHHHHHH
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc------cHHHHHHHHHHHhhc-CchhhhhhhhhhhHHHHHH
Confidence 346678999999999999999999999999999998743 234556666555443 4699999998876432221
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC----CCCCCccccCCCCcceEEEeCCCCHH
Q 045279 237 QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR----PDAVDPALRRPGRFDREIVLGVPDEN 312 (702)
Q Consensus 237 ~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~----~~~ld~al~r~~Rf~~~i~~~~p~~~ 312 (702)
..+. +..+...+......+.-. +.......++-+..|+|+ ...+|+.++. -| +.+.+..|+..
T Consensus 104 i~~~----i~~i~~al~~~~~~~~~~------g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 104 ISQQ----IQSIQDALRAKQKSFTLE------GQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp HHHH----HHHHHHHHHCTSSEEEET------TCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred HHHH----HHHHHHhhcccccccccC------CCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 1111 122222222111111000 000111122455567775 3478999988 66 77999999987
Q ss_pred HHHHHH
Q 045279 313 ARVQIL 318 (702)
Q Consensus 313 er~~Il 318 (702)
...+++
T Consensus 171 ~I~ei~ 176 (231)
T PF12774_consen 171 LIAEIL 176 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 755554
No 467
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.31 E-value=3.2e-06 Score=88.16 Aligned_cols=70 Identities=27% Similarity=0.466 Sum_probs=49.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccH-HHHHHHHHHHHhhCCceEEechhhH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASE-ENIRDLFSKAYRTAPSIVFIDEIDA 228 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~-~~~~~~f~~a~~~~p~il~iDEid~ 228 (702)
...|++|+||+|||||+|+.+||+.+ +.++..++..++......... ..+...+.... ...+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCC
Confidence 45789999999999999999999998 677888888776554322111 11233444432 345999999943
No 468
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.30 E-value=1.6e-05 Score=88.36 Aligned_cols=61 Identities=28% Similarity=0.435 Sum_probs=48.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+.+.+||+-..+-+++|..++...+. +..+..-+||+|||||||||+++.||++++..+.+
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 34889999888888888888854332 22334568999999999999999999999877654
No 469
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.29 E-value=2.7e-06 Score=95.93 Aligned_cols=189 Identities=13% Similarity=0.039 Sum_probs=114.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCC--eEEEEecccccccCcCch--HHHH--------HHHHHHHHhCCCeEEEEeCc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNKYVGES--ELAV--------RTLFSRARTCSPCILFFDEV 531 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~~~g~~--~~~~--------~~~f~~a~~~~~~vl~iDEi 531 (702)
.|+++.|+.||||+++++.++..+.. +|+.+..+--....+|.. +..+ ..++..| ..+|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~A---h~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEA---DGGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeec---cCCEEEecCc
Confidence 68999999999999999999998854 887776554444445532 1111 1122222 4589999999
Q ss_pred chhhcccCCCCchHHHHHHHHHHHhhhCC-----------CCCCcEEEEEecCCC---CccCccccCCCccceEEEcCCC
Q 045279 532 DALTTKRGKEGGWVVERLLNQLLIELDGA-----------DKRKGVFVIGATNRP---DVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 532 d~l~~~r~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~atn~~---~~ld~a~~r~gRf~~~i~~~~p 597 (702)
..+. ..+++.|+.-|+.- .-..++++|++-|.. ..|.++++- ||+..+.++.+
T Consensus 103 n~~~-----------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLE-----------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGL 169 (584)
T ss_pred ccCC-----------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCC
Confidence 9998 89999999999852 122456777763322 347888888 99999999988
Q ss_pred CHHHHH-------HHHHHH--hccCCCCCCCCHHHHhhhhcCCCC-CHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCcc
Q 045279 598 TPDERG-------LILEAL--ARKKPIDDSVDLHTIAQSKFCENL-SGADLAAMMNEAAMAALEDKLISSKSSSDVTPFT 667 (702)
Q Consensus 598 ~~~~r~-------~il~~~--~~~~~~~~~~~~~~la~~~~~~~~-sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~ 667 (702)
...+.. .|.... +.+..+ .+..++.++.....-|. |.+---.+++-|-..|.-+.. ..
T Consensus 170 ~~~~~~~~~~~~~~I~~AR~rl~~v~v-~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr-----------~~ 237 (584)
T PRK13406 170 ALRDAREIPIDADDIAAARARLPAVGP-PPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGR-----------TA 237 (584)
T ss_pred ChHHhcccCCCHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCC-----------CC
Confidence 765421 233222 221111 11222333311111233 434434444444433333322 27
Q ss_pred ccHHHHHHHHhhc
Q 045279 668 IKLTHFEQALSKI 680 (702)
Q Consensus 668 i~~~d~~~al~~~ 680 (702)
|+.+|+..|+.-+
T Consensus 238 V~~~dv~~Aa~lv 250 (584)
T PRK13406 238 VEEEDLALAARLV 250 (584)
T ss_pred CCHHHHHHHHHHH
Confidence 8999999987644
No 470
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.27 E-value=2.3e-06 Score=95.09 Aligned_cols=167 Identities=20% Similarity=0.313 Sum_probs=96.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHH---------------HHHhCCC
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFS---------------RARTCSP 523 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~---------------~a~~~~~ 523 (702)
....++++|.+||||+++|+++.... +.+|+.++|+.+..... -..+|. ......+
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADG 234 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCC
Confidence 45678999999999999999998765 57899999987532211 011111 1122357
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC---------CCcEEEEEecCCCCccCccccCCCccce----
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK---------RKGVFVIGATNRPDVMDRAVLRPGRFGK---- 590 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~---------~~~~~vI~atn~~~~ld~a~~r~gRf~~---- 590 (702)
++|||||++.+. ...+..|+..++...- ..++.+|++|+..-. ....+|+|..
T Consensus 235 gtl~ldei~~l~-----------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~---~~~~~~~~~~~l~~ 300 (441)
T PRK10365 235 GTLFLDEIGDIS-----------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA---AEVNAGRFRQDLYY 300 (441)
T ss_pred CEEEEeccccCC-----------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHH---HHHHcCCchHHHHH
Confidence 899999999999 7778888887765321 124667878765321 1112333321
Q ss_pred ---EEEcCCCCHHH----HHHHHHHHhccCCC--C-CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 591 ---LLYVPLPTPDE----RGLILEALARKKPI--D-DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 591 ---~i~~~~p~~~~----r~~il~~~~~~~~~--~-~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
.+.+..|...+ ...++..++.+... . ....+..-+...+ ...|.| ++|+++++.|+..
T Consensus 301 ~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 301 RLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred HhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 34444444444 34555666554211 0 0111222221122 235655 8888998887753
No 471
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=3.5e-06 Score=86.13 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=81.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc--------c-cc----ccHHHHHHHHHHHH----hhCC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG--------V-SG----ASEENIRDLFSKAY----RTAP 218 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~--------~-~g----~~~~~~~~~f~~a~----~~~p 218 (702)
+-++.+||+||+|+||+++|.++|+.+-+.-..-.|..+..+ . .+ -.-..++.+.+.+. .+..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 446789999999999999999999987432100011111000 0 01 12334455544443 2344
Q ss_pred ceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCC
Q 045279 219 SIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPG 298 (702)
Q Consensus 219 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~ 298 (702)
.|++||++|.|.... .+.||+.+++ .|+++++|..|+.++.+.|.+++
T Consensus 97 kv~ii~~ad~mt~~A-----------aNaLLK~LEE-------------------Pp~~~~fiL~~~~~~~ll~TI~S-- 144 (290)
T PRK05917 97 KIYIIHEADRMTLDA-----------ISAFLKVLED-------------------PPQHGVIILTSAKPQRLPPTIRS-- 144 (290)
T ss_pred eEEEEechhhcCHHH-----------HHHHHHHhhc-------------------CCCCeEEEEEeCChhhCcHHHHh--
Confidence 699999999987543 4568998886 46779999999999999999999
Q ss_pred CcceEEEeCCC
Q 045279 299 RFDREIVLGVP 309 (702)
Q Consensus 299 Rf~~~i~~~~p 309 (702)
|+ ..+.|+++
T Consensus 145 Rc-q~~~~~~~ 154 (290)
T PRK05917 145 RS-LSIHIPME 154 (290)
T ss_pred cc-eEEEccch
Confidence 98 56777765
No 472
>PLN03073 ABC transporter F family; Provisional
Probab=98.25 E-value=3.2e-05 Score=90.13 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred ccCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC------eEEEe---------------------------------
Q 045279 152 WLGVRPMAGILLYGPPGCGKTKLAHAIANET--GVP------FYKIS--------------------------------- 190 (702)
Q Consensus 152 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l--~~~------~~~i~--------------------------------- 190 (702)
.+.+.++..+.|+||+|+|||||.++|+... +.+ ++...
T Consensus 197 sl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~ 276 (718)
T PLN03073 197 SVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQ 276 (718)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred -------------------------------------------------------------chhhhcccccccHHHHHHH
Q 045279 191 -------------------------------------------------------------ATEVVSGVSGASEENIRDL 209 (702)
Q Consensus 191 -------------------------------------------------------------~~~l~~~~~g~~~~~~~~~ 209 (702)
....+..+.|.... +-.
T Consensus 277 ~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~--rv~ 354 (718)
T PLN03073 277 RELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRM--RIA 354 (718)
T ss_pred HHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHH--HHH
Q ss_pred HHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCC
Q 045279 210 FSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDA 289 (702)
Q Consensus 210 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ 289 (702)
+..+....|.+|++||. .+..+.....++..++..+. ..||.++...+.
T Consensus 355 LA~aL~~~p~lLlLDEP-------t~~LD~~~~~~l~~~L~~~~------------------------~tviivsHd~~~ 403 (718)
T PLN03073 355 LARALFIEPDLLLLDEP-------TNHLDLHAVLWLETYLLKWP------------------------KTFIVVSHAREF 403 (718)
T ss_pred HHHHHhcCCCEEEEECC-------CCCCCHHHHHHHHHHHHHcC------------------------CEEEEEECCHHH
Q ss_pred CCc---cccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 045279 290 VDP---ALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 290 ld~---al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
++. .+.- -=+..+.....+......--................... .+...+......+.+....+
T Consensus 404 l~~~~d~i~~--l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~---------~l~~~i~~~~~~a~~~~~~~ 472 (718)
T PLN03073 404 LNTVVTDILH--LHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRS---------HMQAFIDKFRYNAKRASLVQ 472 (718)
T ss_pred HHHhCCEEEE--EECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhhhhhhhHHHh
Q ss_pred hhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccchhhhHH---
Q 045279 367 RKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDR--- 443 (702)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~--- 443 (702)
.. .-..+.+...............+...+...-..+...+++......
T Consensus 473 s~-----------------------------~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~ 523 (718)
T PLN03073 473 SR-----------------------------IKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPL 523 (718)
T ss_pred hc-----------------------------chHHHHHhhhhccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCe
Q ss_pred HHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----------CCeEEEEecccccccCcCchHHHH-
Q 045279 444 YIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----------GANFIHIKGPELLNKYVGESELAV- 511 (702)
Q Consensus 444 ~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----------~~~~~~i~~~~l~~~~~g~~~~~~- 511 (702)
.+... .+.+.++.-+.|+||+|+|||||+++++..+ ...+..+.........+.......
T Consensus 524 il~~v--------sl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~ 595 (718)
T PLN03073 524 LFKNL--------NFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYM 595 (718)
T ss_pred eEecc--------EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHH
Q ss_pred ---------------------------------------HHHHHHHHhCCCeEEEEeC-cchhhcccCCCCchHHHHHHH
Q 045279 512 ---------------------------------------RTLFSRARTCSPCILFFDE-VDALTTKRGKEGGWVVERLLN 551 (702)
Q Consensus 512 ---------------------------------------~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~ 551 (702)
|-.+.++....|.+|++|| ...|. .....
T Consensus 596 ~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD-----------~~s~~ 664 (718)
T PLN03073 596 MRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD-----------LDAVE 664 (718)
T ss_pred HHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC-----------HHHHH
Q ss_pred HHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 552 QLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 552 ~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
.++..+... ...||++|+.++.+.. -+|+++.+
T Consensus 665 ~l~~~L~~~----~gtvIivSHd~~~i~~------~~drv~~l 697 (718)
T PLN03073 665 ALIQGLVLF----QGGVLMVSHDEHLISG------SVDELWVV 697 (718)
T ss_pred HHHHHHHHc----CCEEEEEECCHHHHHH------hCCEEEEE
No 473
>PRK06921 hypothetical protein; Provisional
Probab=98.24 E-value=4.6e-06 Score=85.40 Aligned_cols=69 Identities=29% Similarity=0.436 Sum_probs=45.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDA 228 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~ 228 (702)
...+++|+||||||||+|+.+||+.+ +..+++++..++........ ......+... ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 35789999999999999999999886 45677787766544321111 1112222222 2356999999944
No 474
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.24 E-value=4.1e-07 Score=96.30 Aligned_cols=176 Identities=21% Similarity=0.269 Sum_probs=89.3
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh-----hcc-
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV-----VSG- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l-----~~~- 197 (702)
-+|.|++.+|..+.-.+........ ......+..-|+||+|.||||||.|.+.+++.....+ ++++... ...
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~-~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~ 101 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKND-PDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASV 101 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCC-CT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEE
T ss_pred CcCcCcHHHHHHHHHHHHhcccccc-ccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCcccee
Confidence 4688999988876532222111100 0001134566999999999999999998876654333 3433321 111
Q ss_pred ----cccccHHHH-HHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 198 ----VSGASEENI-RDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 198 ----~~g~~~~~~-~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..|+ ..+ .+.+-.|. ..|++|||+|.+.... ...|...|+.-...+..++ ...
T Consensus 102 ~~d~~~~~--~~leaGalvlad---~GiccIDe~dk~~~~~-----------~~~l~eaMEqq~isi~kag------i~~ 159 (331)
T PF00493_consen 102 SRDPVTGE--WVLEAGALVLAD---GGICCIDEFDKMKEDD-----------RDALHEAMEQQTISIAKAG------IVT 159 (331)
T ss_dssp CCCGGTSS--ECEEE-HHHHCT---TSEEEECTTTT--CHH-----------HHHHHHHHHCSCEEECTSS------SEE
T ss_pred ccccccce--eEEeCCchhccc---CceeeecccccccchH-----------HHHHHHHHHcCeeccchhh------hcc
Confidence 0111 000 12333333 3499999999886432 3357777775433332221 111
Q ss_pred CCCCeEEEEEecCCCC-------------CCCccccCCCCcceEEEe-CCCCHHHHHHHHHHhhcCc
Q 045279 273 SKPGYVLVIGATNRPD-------------AVDPALRRPGRFDREIVL-GVPDENARVQILSVLTRNL 325 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~~i~~-~~p~~~er~~Il~~~~~~~ 325 (702)
..+-+.-|+|++|+.. .+++.+++ |||-++.+ ..|+.+.-..+..+++..+
T Consensus 160 ~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~ 224 (331)
T PF00493_consen 160 TLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSH 224 (331)
T ss_dssp EEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT
T ss_pred cccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEecc
Confidence 1244578999999865 47889999 99987654 5666666666666666554
No 475
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=8.9e-06 Score=81.38 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=84.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeE--------------EEEecccccccCc---CchHHHHHHHHHHHH----
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANF--------------IHIKGPELLNKYV---GESELAVRTLFSRAR---- 519 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~--------------~~i~~~~l~~~~~---g~~~~~~~~~f~~a~---- 519 (702)
.++..+||+||.|+||..+|.++|..+-+.- ..-.-+|+.--+. .-....+|.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4677899999999999999999998662210 0000011111010 112334555554432
Q ss_pred -hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCC
Q 045279 520 -TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 520 -~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
.....|++|+++|.+. ....|.||..++. +..++++|.+|+.++.+-|.+++ |+- .+.|+.+
T Consensus 85 e~~~~KV~II~~ae~m~-----------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN-----------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhhC-----------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--hee-eeecCCh
Confidence 1346899999999999 8999999999996 45678888899999999999988 984 5667766
No 476
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.22 E-value=1.7e-06 Score=86.99 Aligned_cols=143 Identities=24% Similarity=0.345 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCC-e--EEEEec-cc--------c-------------cc-cC------------
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGA-N--FIHIKG-PE--------L-------------LN-KY------------ 503 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~-~--~~~i~~-~~--------l-------------~~-~~------------ 503 (702)
+...++++||.|+|||++++.+...+.. . .+.+.. .. + .. ..
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDL 98 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence 4567899999999999999999998732 1 111111 00 0 00 00
Q ss_pred cCchHHHHHHHHHHHHhC-CCeEEEEeCcchhh-cccCCCCchHHHHHHHHHHHhhhCCCCCCcE-EEEEecCCC---C-
Q 045279 504 VGESELAVRTLFSRARTC-SPCILFFDEVDALT-TKRGKEGGWVVERLLNQLLIELDGADKRKGV-FVIGATNRP---D- 576 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~-~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vI~atn~~---~- 576 (702)
.......+..++...... ...||+|||++.+. ..+.. ...+..|...++......++ +|+++|... .
T Consensus 99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~ 172 (234)
T PF01637_consen 99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED------KDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEF 172 (234)
T ss_dssp -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT------HHHHHHHHHHHHH----TTEEEEEEESSHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch------HHHHHHHHHHHhhccccCCceEEEECCchHHHHHh
Confidence 011234455666665543 34899999999998 22211 45566666666654344444 444444321 1
Q ss_pred -ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC
Q 045279 577 -VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 577 -~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
.-...+. +|+.. +.+++.+.++..++++..+++.
T Consensus 173 ~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~ 207 (234)
T PF01637_consen 173 LDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL 207 (234)
T ss_dssp T-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC
T ss_pred hcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh
Confidence 1122232 38876 9999999999999999987765
No 477
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.22 E-value=1.3e-05 Score=98.33 Aligned_cols=143 Identities=23% Similarity=0.300 Sum_probs=96.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh------cc----cccccHHHHHHHHHHHHhhCCceEEechhhH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV------SG----VSGASEENIRDLFSKAYRTAPSIVFIDEIDA 228 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~------~~----~~g~~~~~~~~~f~~a~~~~p~il~iDEid~ 228 (702)
.++||.||.|+|||.++..+|..++..++.++-.... .. ..|....+-..+.+.++.+ +++++||++.
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G--~~~vlD~lnl 518 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNG--DWIVLDELNL 518 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhC--CEEEeccccc
Confidence 4699999999999999999999999999887765432 21 2233444444555555544 5999999975
Q ss_pred hhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC------CCCccccCCCCcce
Q 045279 229 IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD------AVDPALRRPGRFDR 302 (702)
Q Consensus 229 l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~------~ld~al~r~~Rf~~ 302 (702)
... .++..|...+++...++.+.... ....+++.++.+|-|++. .+..+++. || .
T Consensus 519 a~~-----------dvL~aLnrllddnRel~ipe~~r-----lv~~h~~f~lfatqn~~~~y~grk~lsRa~~~--rf-~ 579 (1856)
T KOG1808|consen 519 APH-----------DVLEALNRLLDDNRELFIPETQR-----LVKAHPEFMLFATQNPPGTYGGRKILSRALRN--RF-I 579 (1856)
T ss_pred cch-----------HHHHHHHhhhhhhccccccccce-----eeccCcchhhhhhccCccccchhhhhhhcccc--cc-h
Confidence 542 35666777777655444433222 222345577777778874 45677777 88 5
Q ss_pred EEEeCCCCHHHHHHHHHHhh
Q 045279 303 EIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 303 ~i~~~~p~~~er~~Il~~~~ 322 (702)
.++|..-..++...|+...+
T Consensus 580 e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 580 ELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhhcCchhhhhhhcccc
Confidence 57777777777777876544
No 478
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.21 E-value=1.3e-05 Score=75.42 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=63.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc----------------------cCcCc--hHHHHHHHHHHH
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN----------------------KYVGE--SELAVRTLFSRA 518 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~----------------------~~~g~--~~~~~~~~f~~a 518 (702)
++++||||+|||+++..++... +.+++.++...... .+... .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 45666665443221 01111 111122334556
Q ss_pred HhCCCeEEEEeCcchhhcccCC---CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 519 RTCSPCILFFDEVDALTTKRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~~---~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
....+.+|+|||+..+...... .......+.+..++..+ ...++.+|++++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~vv~~~~~~~~ 139 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERA----RKGGVTVIFTLQVPSG 139 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHH----hcCCceEEEEEecCCc
Confidence 6678899999999988743211 11122234444444443 2346667777765543
No 479
>PF05729 NACHT: NACHT domain
Probab=98.20 E-value=2.4e-05 Score=74.01 Aligned_cols=140 Identities=17% Similarity=0.238 Sum_probs=75.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCC---------CeEEEechhhhcccc------------cccHHHHHHHH-HHHHhhC
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGV---------PFYKISATEVVSGVS------------GASEENIRDLF-SKAYRTA 217 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~---------~~~~i~~~~l~~~~~------------g~~~~~~~~~f-~~a~~~~ 217 (702)
-++|+|+||+|||++++.++..+.. .++.+.+.+...... ..........+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999877621 123444443322210 01111111111 1222345
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC--CCCcccc
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD--AVDPALR 295 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~--~ld~al~ 295 (702)
..+|+||-+|.+...... .....+...+...+... .+.++.+|.++.+.. .+...+.
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~------------------~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQA------------------LPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhc------------------cCCCCeEEEEEcCChHHHHHHhcC
Confidence 668999999998864332 11112222222233220 012245555554422 2333332
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 296 RPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 296 r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
. . ..+.+...+.++..++++.+++.
T Consensus 141 ~---~-~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 141 Q---A-QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred C---C-cEEEECCCCHHHHHHHHHHHhhc
Confidence 2 1 46889999999999999887753
No 480
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1.3e-05 Score=82.35 Aligned_cols=128 Identities=15% Similarity=0.154 Sum_probs=86.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEE-------------EE---ecccccccCc-C--chHHHHHHHHHHHH--
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFI-------------HI---KGPELLNKYV-G--ESELAVRTLFSRAR-- 519 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~-------------~i---~~~~l~~~~~-g--~~~~~~~~~f~~a~-- 519 (702)
+.+..+||+|| +||+++|+.+|..+-+.-- .+ +-+|+.--.. | -.-..+|.+...+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 55678899996 6899999999986622100 00 0012111000 1 12345666665543
Q ss_pred --hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCC
Q 045279 520 --TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 520 --~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p 597 (702)
.....|++||++|.+. ....|.||..++.. ..++++|.+|+.++.+-|.+.+ |+ ..+.|+.
T Consensus 100 p~~~~~kV~II~~ad~m~-----------~~AaNaLLKtLEEP--p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~- 162 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH-----------VNAANSLLKVIEEP--QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK- 162 (290)
T ss_pred cccCCcEEEEeehhhhcC-----------HHHHHHHHHHhcCC--CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-
Confidence 2345799999999999 88999999999964 4567888889889999999988 99 5788876
Q ss_pred CHHHHHHHHH
Q 045279 598 TPDERGLILE 607 (702)
Q Consensus 598 ~~~~r~~il~ 607 (702)
+.++..+++.
T Consensus 163 ~~~~~~~~L~ 172 (290)
T PRK07276 163 NEAYLIQLLE 172 (290)
T ss_pred cHHHHHHHHH
Confidence 5555545543
No 481
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.15 E-value=3.9e-06 Score=93.33 Aligned_cols=197 Identities=18% Similarity=0.228 Sum_probs=108.0
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc---
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV--- 198 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~--- 198 (702)
.++|.......+...+.. -.....+++++|++||||+++|+++.... +.+|+.++|+.+....
T Consensus 140 ~lig~s~~~~~~~~~i~~-----------~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~ 208 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL-----------VAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLES 208 (441)
T ss_pred ceEecCHHHHHHHHHHhh-----------ccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHH
Confidence 466666666666554421 12345779999999999999999997654 5789999998764321
Q ss_pred --ccccH-------HHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 199 --SGASE-------ENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 199 --~g~~~-------~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
.|... ....++|..+ .+++||||||+.|....+ ..|+..++.... ...|+.
T Consensus 209 ~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l~~~~q-----------~~l~~~l~~~~~-~~~~~~----- 268 (441)
T PRK10365 209 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISPMMQ-----------VRLLRAIQEREV-QRVGSN----- 268 (441)
T ss_pred HhcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccCCHHHH-----------HHHHHHHccCcE-EeCCCC-----
Confidence 11000 0001122332 356999999999986533 235555543211 111111
Q ss_pred CCCCCCCeEEEEEecCCCC-------CCCccccCCCCcceEEEeCCCCHHHHHH----HHHHhhcCccc----C---C-c
Q 045279 270 ASDSKPGYVLVIGATNRPD-------AVDPALRRPGRFDREIVLGVPDENARVQ----ILSVLTRNLRV----E---G-S 330 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~-------~ld~al~r~~Rf~~~i~~~~p~~~er~~----Il~~~~~~~~~----~---~-~ 330 (702)
...+.++++|+||+..- .+.+.|.. |+ ..+.+..|+..+|.+ ++..++..+.. . . .
T Consensus 269 --~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~--~l-~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~ 343 (441)
T PRK10365 269 --QTISVDVRLIAATHRDLAAEVNAGRFRQDLYY--RL-NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTP 343 (441)
T ss_pred --ceeeeceEEEEeCCCCHHHHHHcCCchHHHHH--Hh-ccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCH
Confidence 11233478998887632 12222322 44 356788888776654 44444433211 0 1 1
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 331 FDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
..+..+....=-.+.++|.++++.++.
T Consensus 344 ~a~~~L~~~~wpgN~reL~~~~~~~~~ 370 (441)
T PRK10365 344 QAMDLLIHYDWPGNIRELENAVERAVV 370 (441)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 123334433322366788887777654
No 482
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=2e-05 Score=81.73 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=90.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC-------------eEEEEecccccccCcCchHHHHHHHHHHHHh-----CC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA-------------NFIHIKGPELLNKYVGESELAVRTLFSRART-----CS 522 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~-----~~ 522 (702)
......||+|+.|.||+.+|+.++..+-+ +++.++.. +.- -+-..++.+.+.+.- ..
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCC
Confidence 34456789999999999999999987622 12222200 000 122345566555421 36
Q ss_pred CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHH
Q 045279 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDER 602 (702)
Q Consensus 523 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r 602 (702)
..|++||++|.+. ....|.||..|+.. ...+++|.+|+.++.+-|.+.+ |+ .++.|++++.++.
T Consensus 91 ~KvvII~~~e~m~-----------~~a~NaLLK~LEEP--p~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l 154 (299)
T PRK07132 91 KKILIIKNIEKTS-----------NSLLNALLKTIEEP--PKDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKI 154 (299)
T ss_pred ceEEEEecccccC-----------HHHHHHHHHHhhCC--CCCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHH
Confidence 6899999999998 88899999999974 4566777777788889888887 88 4899999998887
Q ss_pred HHHHHH
Q 045279 603 GLILEA 608 (702)
Q Consensus 603 ~~il~~ 608 (702)
...+..
T Consensus 155 ~~~l~~ 160 (299)
T PRK07132 155 LAKLLS 160 (299)
T ss_pred HHHHHH
Confidence 766653
No 483
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.15 E-value=6.4e-06 Score=72.10 Aligned_cols=23 Identities=43% Similarity=0.850 Sum_probs=20.6
Q ss_pred eEEEcCCCCChhHHHHHHHHHhC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
|.|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998764
No 484
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.15 E-value=2.3e-05 Score=78.25 Aligned_cols=67 Identities=28% Similarity=0.386 Sum_probs=52.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
...+..++||+|||||.++|.+|..+|.+++.++|++.++ ...+.++|.-+.. .++.+.|||++.+.
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~-~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQ-SGAWLCFDEFNRLS 97 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHH-HT-EEEEETCCCSS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhh-cCchhhhhhhhhhh
Confidence 3456789999999999999999999999999999988654 3456667755544 46899999999987
No 485
>PF05729 NACHT: NACHT domain
Probab=98.15 E-value=2.8e-05 Score=73.58 Aligned_cols=141 Identities=15% Similarity=0.192 Sum_probs=72.8
Q ss_pred eEEEcCCCCChhHHHHHHHHHhC--------Ce-EEEEeccccccc------------CcCchHHHHHHHH-HHHHhCCC
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAG--------AN-FIHIKGPELLNK------------YVGESELAVRTLF-SRARTCSP 523 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~--------~~-~~~i~~~~l~~~------------~~g~~~~~~~~~f-~~a~~~~~ 523 (702)
++++|+||+|||++++.++..+. .. ++.+...+.... ........+...+ ..+.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 68999999999999999998661 11 223333222211 0011111112212 22334566
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHH
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERG 603 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~ 603 (702)
.+|+||-+|.+....+..........+..++.. ......+++|.+.+.....+...+.. . ..+.++..+.++..
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQ--ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPFSEEDIK 156 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhh--ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCCCHHHHH
Confidence 789999999998543221111122333333332 01222233332222222122222222 1 57889999999999
Q ss_pred HHHHHHhcc
Q 045279 604 LILEALARK 612 (702)
Q Consensus 604 ~il~~~~~~ 612 (702)
++++.+++.
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999988764
No 486
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.15 E-value=6.1e-06 Score=90.48 Aligned_cols=175 Identities=22% Similarity=0.282 Sum_probs=94.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechh-----hhcc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLG-VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATE-----VVSG 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~-----l~~~ 197 (702)
-.|.|+|++|+-+.-.+.- -...-+...| .+..-||||+|.||||||-+.+.+++.+..-.+. ++.. +...
T Consensus 429 PsIye~edvKkglLLqLfG--Gt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTay 505 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFG--GTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAY 505 (804)
T ss_pred hhhhcccchhhhHHHHHhc--CCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceee
Confidence 4678999999887633311 1111111112 4455789999999999999999999988544332 2110 1000
Q ss_pred cccccHHHHHHHHHHHH---hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAY---RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~---~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
.. .....+++..+.. -....|..|||+|+|.....+ + |..+|+.-...+-. -++-...
T Consensus 506 Vt--rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrS--------v---LhEvMEQQTvSIAK------AGII~sL 566 (804)
T KOG0478|consen 506 VT--KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRS--------V---LHEVMEQQTLSIAK------AGIIASL 566 (804)
T ss_pred EE--ecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHH--------H---HHHHHHHhhhhHhh------cceeeec
Confidence 00 0011122211111 123458899999999644322 1 33333321111110 0111122
Q ss_pred CCeEEEEEecCCCC-------------CCCccccCCCCcceEE-EeCCCCHHHHHHHHHHhh
Q 045279 275 PGYVLVIGATNRPD-------------AVDPALRRPGRFDREI-VLGVPDENARVQILSVLT 322 (702)
Q Consensus 275 ~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~~i-~~~~p~~~er~~Il~~~~ 322 (702)
+.+.=|||++|+.+ .|+|.|++ ||+-++ .++.|++..-+.+..++.
T Consensus 567 NAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 567 NARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIV 626 (804)
T ss_pred cccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHH
Confidence 33456999999744 58899999 998765 566777664455555443
No 487
>PRK06851 hypothetical protein; Provisional
Probab=98.13 E-value=8.1e-05 Score=78.85 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=29.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPE 498 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~ 498 (702)
.+-++|.|+||||||++++.++..+ |..+..+.|+.
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~ 252 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHCGF 252 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4458999999999999999999877 77777777653
No 488
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=1.9e-05 Score=79.11 Aligned_cols=121 Identities=14% Similarity=0.125 Sum_probs=81.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCe------EEEechhhhcc--------cc---cccHHHHHHHHHHHH----
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPF------YKISATEVVSG--------VS---GASEENIRDLFSKAY---- 214 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~------~~i~~~~l~~~--------~~---g~~~~~~~~~f~~a~---- 214 (702)
.+++.+||+||+|+||..+|.++|+.+-+.- ..-+|..+..+ +. .-....++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4567899999999999999999998873211 00111111111 00 011233444443322
Q ss_pred h-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCcc
Q 045279 215 R-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPA 293 (702)
Q Consensus 215 ~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~a 293 (702)
. ++..|++|+++|.|... ..+.||..+++ .|.++++|..|+.++.+.|.
T Consensus 85 e~~~~KV~II~~ae~m~~~-----------AaNaLLK~LEE-------------------Pp~~t~fiLit~~~~~lLpT 134 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNKQ-----------SANSLLKLIEE-------------------PPKNTYGIFTTRNENNILNT 134 (261)
T ss_pred hcCCCEEEEeccHhhhCHH-----------HHHHHHHhhcC-------------------CCCCeEEEEEECChHhCchH
Confidence 2 23569999999988743 34568998886 46779999999999999999
Q ss_pred ccCCCCcceEEEeCCC
Q 045279 294 LRRPGRFDREIVLGVP 309 (702)
Q Consensus 294 l~r~~Rf~~~i~~~~p 309 (702)
+++ |+ ..+.++.+
T Consensus 135 I~S--RC-q~~~~~~~ 147 (261)
T PRK05818 135 ILS--RC-VQYVVLSK 147 (261)
T ss_pred hhh--he-eeeecCCh
Confidence 999 98 45777666
No 489
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.13 E-value=3.4e-06 Score=98.07 Aligned_cols=196 Identities=18% Similarity=0.234 Sum_probs=120.0
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCc-------hHHHHHHHH---HH--HHhCCCeEEEEeCcch
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGE-------SELAVRTLF---SR--ARTCSPCILFFDEVDA 533 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~-------~~~~~~~~f---~~--a~~~~~~vl~iDEid~ 533 (702)
++++||||+|||+.+.++|..++..+++.++++..+++... +...+...| .. .......||+|||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 68999999999999999999999999999999876654321 111222222 00 1112234999999999
Q ss_pred hhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC
Q 045279 534 LTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 534 l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
+... . +..+.++-.... ....=||+++|.........+. |-...++|+.|+.+.+..-+...+...
T Consensus 440 ~~~~-d-------Rg~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se 505 (871)
T KOG1968|consen 440 MFGE-D-------RGGVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSE 505 (871)
T ss_pred ccch-h-------hhhHHHHHHHHH----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhccc
Confidence 8851 1 222222222222 2233478889988776664444 555689999999998776666655543
Q ss_pred CC-CCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 614 PI-DDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI---SSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 614 ~~-~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~---~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.+ -.+..++.+. ..+|+|||+++....+..+..-.. ............++..+|+.+...+.
T Consensus 506 ~~ki~~~~l~~~s------~~~~~DiR~~i~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~L~ 571 (871)
T KOG1968|consen 506 GIKISDDVLEEIS------KLSGGDIRQIIMQLQFWSLSKPAELPKKKGTPIKTSKKNITVKDFDAAEGLLD 571 (871)
T ss_pred ceecCcHHHHHHH------HhcccCHHHHHHHHhhhhccchhhhccccCccccccccccccchhHHHhhhcc
Confidence 33 3344566666 346899999998777663331111 11111112123566666666655544
No 490
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.13 E-value=4e-06 Score=86.06 Aligned_cols=140 Identities=20% Similarity=0.296 Sum_probs=76.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhC-Ce--EEEEecccccccCcCchHHHHHHHHHHH-----------HhCCCeEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAG-AN--FIHIKGPELLNKYVGESELAVRTLFSRA-----------RTCSPCILF 527 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~-~~--~~~i~~~~l~~~~~g~~~~~~~~~f~~a-----------~~~~~~vl~ 527 (702)
...++||+||+|||||.+++.+-..+. .. ...++.+.. -+...++.+++.. ......|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 456899999999999999987665442 22 233443321 1222233332211 123446999
Q ss_pred EeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-------CCCcEEEEEecCCC---CccCccccCCCccceEEEcCCC
Q 045279 528 FDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-------KRKGVFVIGATNRP---DVMDRAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 528 iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~~vI~atn~~---~~ld~a~~r~gRf~~~i~~~~p 597 (702)
||++..-.... .+.....+++.+++..---+. .-.++.+|+|+|.. ..+.+.++| .| .++.++.|
T Consensus 106 iDDlN~p~~d~--ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p 180 (272)
T PF12775_consen 106 IDDLNMPQPDK--YGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYP 180 (272)
T ss_dssp EETTT-S---T--TS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----
T ss_pred ecccCCCCCCC--CCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCC
Confidence 99998655322 222222344444443210011 11357778888753 257888888 77 48999999
Q ss_pred CHHHHHHHHHHHhcc
Q 045279 598 TPDERGLILEALARK 612 (702)
Q Consensus 598 ~~~~r~~il~~~~~~ 612 (702)
+.+....|+..++..
T Consensus 181 ~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 181 SDESLNTIFSSILQS 195 (272)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhh
Confidence 999999888887664
No 491
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.10 E-value=3.4e-06 Score=95.06 Aligned_cols=133 Identities=12% Similarity=0.170 Sum_probs=92.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechhhhcccccccH--H--------HHHHHHHHHHhhCCceEEechh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGV--PFYKISATEVVSGVSGASE--E--------NIRDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~l~~~~~g~~~--~--------~~~~~f~~a~~~~p~il~iDEi 226 (702)
.||+|.|++|||||+++++++..+.. +|+.+..+.-....+|... . --.+++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 68999999999999999999999864 7776655544444444431 1 01233444433 49999999
Q ss_pred hHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcceE
Q 045279 227 DAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFDRE 303 (702)
Q Consensus 227 d~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~~~ 303 (702)
+.+. ..++..|+..|+.-...+.. .+.+...|.++++||+.|.. ..++++++. ||+..
T Consensus 103 n~~~-----------~~~~~aLleame~G~vtIeR------~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~ 163 (584)
T PRK13406 103 ERLE-----------PGTAARLAAALDTGEVRLER------DGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFH 163 (584)
T ss_pred ccCC-----------HHHHHHHHHHHhCCcEEEEE------CCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEE
Confidence 6655 45677899999865443321 22333456779999985543 358999999 99999
Q ss_pred EEeCCCCHHH
Q 045279 304 IVLGVPDENA 313 (702)
Q Consensus 304 i~~~~p~~~e 313 (702)
+.++.|+..+
T Consensus 164 v~v~~~~~~~ 173 (584)
T PRK13406 164 LDLDGLALRD 173 (584)
T ss_pred EEcCCCChHH
Confidence 9999888654
No 492
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.10 E-value=7.3e-06 Score=92.48 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=87.9
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHc-CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE-EecccccccCcC
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEF-GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH-IKGPELLNKYVG 505 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~-i~~~~l~~~~~g 505 (702)
...|.|.+.+|+.+--.+... ......+- .++.--|+||+|-||||||.+.+.+++.+...++. -.++.- +|
T Consensus 285 aPsIyG~e~VKkAilLqLfgG--v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGG--VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AG 358 (682)
T ss_pred cccccCcHHHHHHHHHHhcCC--CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cC
Confidence 345788888887653211110 00000000 02223579999999999999999999887544332 122111 11
Q ss_pred chHHHHHHHH--H---HH---HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcE
Q 045279 506 ESELAVRTLF--S---RA---RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGV 566 (702)
Q Consensus 506 ~~~~~~~~~f--~---~a---~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~ 566 (702)
-+...++.-. + .| .-..++|..|||+|.+. ....+.+.-.|+... -+.++
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~-----------~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMN-----------EEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCC-----------hHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 1111111111 0 11 12367899999999987 455555555565421 23456
Q ss_pred EEEEecCCCC-------------ccCccccCCCccceEEEcC-CCCHH
Q 045279 567 FVIGATNRPD-------------VMDRAVLRPGRFGKLLYVP-LPTPD 600 (702)
Q Consensus 567 ~vI~atn~~~-------------~ld~a~~r~gRf~~~i~~~-~p~~~ 600 (702)
-|++|+|... .|++++++ |||.++.+. .|+.+
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFDLifvl~D~~d~~ 473 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFDLIFVLKDDPDEE 473 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCCeeEEecCCCCcc
Confidence 6788888653 67788888 999887665 45554
No 493
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.10 E-value=7.9e-05 Score=80.29 Aligned_cols=61 Identities=25% Similarity=0.443 Sum_probs=43.2
Q ss_pred CcccccCHHHHHHHHHHHhhhh-ccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 122 RFQDLGGMESVLEELKMEVIVP-LYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~-~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
+.+++.=..+-+.++.+++... ...+++ ..+-+||+||+||||||.++.|+++++..++.-
T Consensus 80 t~eeLAVHkkKI~eVk~WL~~~~~~~~~l-------~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 80 TLEELAVHKKKISEVKQWLKQVAEFTPKL-------GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred cHHHHhhhHHhHHHHHHHHHHHHHhccCC-------CceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 6677766666666677666411 112222 234589999999999999999999999887653
No 494
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.09 E-value=9.5e-05 Score=76.00 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=84.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCe--------EEEechhhhcc------c---ccc--cHHHHHHHHHHHH--
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPF--------YKISATEVVSG------V---SGA--SEENIRDLFSKAY-- 214 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~--------~~i~~~~l~~~------~---~g~--~~~~~~~~f~~a~-- 214 (702)
+-++.+||+|| +||+++|+.+|+.+-+.- ..-+|..+..+ + .|. .-..++.+...+.
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 44677999996 689999999998873211 01111111111 0 111 2245555555443
Q ss_pred --hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCc
Q 045279 215 --RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDP 292 (702)
Q Consensus 215 --~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~ 292 (702)
.+...|++||++|.|... ..+.||+.+++ .|.++++|.+|+.++.+-|
T Consensus 100 p~~~~~kV~II~~ad~m~~~-----------AaNaLLKtLEE-------------------Pp~~t~~iL~t~~~~~lLp 149 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMHVN-----------AANSLLKVIEE-------------------PQSEIYIFLLTNDENKVLP 149 (290)
T ss_pred cccCCcEEEEeehhhhcCHH-----------HHHHHHHHhcC-------------------CCCCeEEEEEECChhhCch
Confidence 234469999999998744 34568998886 3556889999999999999
Q ss_pred cccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 293 ALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 293 al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
.+++ |+ ..+.|+. +.++..+++.
T Consensus 150 TI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 150 TIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred HHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 9999 99 6788865 5565555554
No 495
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.09 E-value=2.8e-06 Score=83.98 Aligned_cols=137 Identities=24% Similarity=0.394 Sum_probs=80.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHH------HhCCCeEEEechhhhcc-------------cccccHHHHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIAN------ETGVPFYKISATEVVSG-------------VSGASEENIRDLFSKAY 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~------~l~~~~~~i~~~~l~~~-------------~~g~~~~~~~~~f~~a~ 214 (702)
.++...++||.||+|.||+.||+-|-. .+..+|+.+||..+... +.|..+. -.+++..|
T Consensus 204 a~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~-r~gllrsa- 281 (531)
T COG4650 204 AIRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARES-REGLLRSA- 281 (531)
T ss_pred HhhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhh-hhhhhccC-
Confidence 456678899999999999999998843 35789999999987543 1122111 12333333
Q ss_pred hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC-C-C----
Q 045279 215 RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR-P-D---- 288 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~-~-~---- 288 (702)
...+||+|||..+..+.+. -|+..+++.. ++..|+.... ...+.+|+-|-. . .
T Consensus 282 --dggmlfldeigelgadeqa-----------mllkaieekr-f~pfgsdr~v-------~sdfqliagtvrdlrq~vae 340 (531)
T COG4650 282 --DGGMLFLDEIGELGADEQA-----------MLLKAIEEKR-FYPFGSDRQV-------SSDFQLIAGTVRDLRQLVAE 340 (531)
T ss_pred --CCceEehHhhhhcCccHHH-----------HHHHHHHhhc-cCCCCCcccc-------ccchHHhhhhHHHHHHHHhc
Confidence 2349999999776644332 3666676543 3332322211 123666765533 1 1
Q ss_pred -CCCccccCCCCcceEEEeCCCCHHHHHH
Q 045279 289 -AVDPALRRPGRFDREIVLGVPDENARVQ 316 (702)
Q Consensus 289 -~ld~al~r~~Rf~~~i~~~~p~~~er~~ 316 (702)
..-..+.. |+ ..+.|..|...+|.+
T Consensus 341 g~fredl~a--ri-nlwtf~lpgl~qr~e 366 (531)
T COG4650 341 GKFREDLYA--RI-NLWTFTLPGLRQRQE 366 (531)
T ss_pred cchHHHHHH--hh-heeeeeccccccCcc
Confidence 12222322 44 456788887766543
No 496
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.09 E-value=3e-05 Score=77.57 Aligned_cols=123 Identities=20% Similarity=0.191 Sum_probs=74.2
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcC-----
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVG----- 505 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g----- 505 (702)
+.|+.-+++.+-..+......+. -+.|.-+-|+|+|||||.++++.||+.+-..- -.|.++..|+.
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G---l~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG---LRSPFVHHFVATLHFP 154 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhcc---ccchhHHHhhhhccCC
Confidence 56777676666555544332221 13345566899999999999999999761100 01122221111
Q ss_pred -------chHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-----CCCCcEEEEEecC
Q 045279 506 -------ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-----DKRKGVFVIGATN 573 (702)
Q Consensus 506 -------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-----~~~~~~~vI~atn 573 (702)
..++..+.+-..+..+..++++|||+|.+. ..++..+--.+|.. ....+.++|+-+|
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp-----------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN 223 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP-----------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSN 223 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC-----------HhHHHHHhhhhccccccccccccceEEEEEcC
Confidence 122233455556667888999999999998 66666666556532 2344567777776
No 497
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.05 E-value=8.4e-05 Score=77.45 Aligned_cols=169 Identities=17% Similarity=0.144 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEechhhhcc-------
Q 045279 130 ESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE--TGVPF---YKISATEVVSG------- 197 (702)
Q Consensus 130 ~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~--l~~~~---~~i~~~~l~~~------- 197 (702)
+..+++|.+.+.. ......-|.|+|++|+|||+||+.+++. ....| +.++.+.-...
T Consensus 2 e~~~~~l~~~L~~-----------~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i 70 (287)
T PF00931_consen 2 EKEIEKLKDWLLD-----------NSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQI 70 (287)
T ss_dssp HHHHHHHHHHHHT-----------TTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHH
T ss_pred HHHHHHHHHHhhC-----------CCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccc
Confidence 4566667666622 1145677999999999999999999977 44332 33333321110
Q ss_pred ------c-----ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 198 ------V-----SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 198 ------~-----~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
. ...........+.......+++|++|+++... .+..+...+...
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~----------- 126 (287)
T PF00931_consen 71 LRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE-------------DLEELREPLPSF----------- 126 (287)
T ss_dssp HHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH-------------HH-------HCH-----------
T ss_pred cccccccccccccccccccccccchhhhccccceeeeeeecccc-------------cccccccccccc-----------
Confidence 0 11122334445555556668999999995432 111122221111
Q ss_pred CCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc----cCCcccHHHHHhhCCC
Q 045279 267 KSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR----VEGSFDLVKIARSTPG 342 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~----~~~~~~~~~la~~t~g 342 (702)
..+..||.||.... +-..+.. . ...+.++..+.++..++|........ .........+++.+.|
T Consensus 127 --------~~~~kilvTTR~~~-v~~~~~~--~-~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 194 (287)
T PF00931_consen 127 --------SSGSKILVTTRDRS-VAGSLGG--T-DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG 194 (287)
T ss_dssp --------HSS-EEEEEESCGG-GGTTHHS--C-EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT
T ss_pred --------cccccccccccccc-ccccccc--c-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11245666776532 2222211 1 36799999999999999988765443 1122335678888877
Q ss_pred CCH
Q 045279 343 FVG 345 (702)
Q Consensus 343 ~~~ 345 (702)
...
T Consensus 195 lPL 197 (287)
T PF00931_consen 195 LPL 197 (287)
T ss_dssp -HH
T ss_pred ccc
Confidence 443
No 498
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.04 E-value=7e-05 Score=70.46 Aligned_cols=72 Identities=22% Similarity=0.371 Sum_probs=46.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc----------------------cccc--cHHHHHHHHHHH
Q 045279 161 ILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----------------------VSGA--SEENIRDLFSKA 213 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----------------------~~g~--~~~~~~~~f~~a 213 (702)
++|+||||+|||+++..++... +.+++.++....... .... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998876 455666555432210 0011 111111223445
Q ss_pred HhhCCceEEechhhHhhhc
Q 045279 214 YRTAPSIVFIDEIDAIASK 232 (702)
Q Consensus 214 ~~~~p~il~iDEid~l~~~ 232 (702)
....+.+++|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 5667889999999988754
No 499
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.00 E-value=1.8e-05 Score=69.26 Aligned_cols=23 Identities=48% Similarity=0.907 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhC
Q 045279 161 ILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l~ 183 (702)
|.|+||||+|||++|+.|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988874
No 500
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.00 E-value=2.8e-05 Score=74.43 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=43.0
Q ss_pred CcCc--hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 503 YVGE--SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 503 ~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
|..+ +.+..|..+++|....|.|++|||--+... .+++.+.|..|....... ...|+.|+..
T Consensus 133 yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALD----------PElv~EVL~vm~~LA~eG-mTMivVTHEM 196 (240)
T COG1126 133 YPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALD----------PELVGEVLDVMKDLAEEG-MTMIIVTHEM 196 (240)
T ss_pred CccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCC----------HHHHHHHHHHHHHHHHcC-CeEEEEechh
Confidence 5443 445568888999999999999999665542 677777777776655444 4455567654
Done!