Query 045279
Match_columns 702
No_of_seqs 574 out of 4262
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 20:36:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2E-93 7E-98 819.5 31.7 550 118-701 198-764 (806)
2 1ypw_A Transitional endoplasmi 100.0 1E-69 3.4E-74 636.4 19.5 550 118-701 198-764 (806)
3 4b4t_J 26S protease regulatory 100.0 6.9E-52 2.4E-56 438.4 26.0 269 413-694 132-403 (405)
4 4b4t_I 26S protease regulatory 100.0 2.8E-50 9.7E-55 426.3 23.6 257 419-688 172-431 (437)
5 4b4t_L 26S protease subunit RP 100.0 2.9E-49 9.9E-54 425.7 28.1 263 418-693 170-435 (437)
6 4b4t_M 26S protease regulatory 100.0 6.3E-49 2.1E-53 422.7 28.7 257 417-686 169-428 (434)
7 4b4t_H 26S protease regulatory 100.0 4.1E-49 1.4E-53 421.6 26.3 263 420-695 200-466 (467)
8 4b4t_K 26S protease regulatory 100.0 1.6E-48 5.3E-53 419.6 25.1 259 419-690 162-425 (428)
9 4b4t_J 26S protease regulatory 100.0 4.2E-44 1.4E-48 378.9 24.4 252 113-413 137-391 (405)
10 4b4t_I 26S protease regulatory 100.0 3.4E-43 1.2E-47 372.3 24.2 251 116-415 174-427 (437)
11 4b4t_M 26S protease regulatory 100.0 2.1E-42 7.3E-47 372.0 28.2 252 116-416 173-427 (434)
12 4b4t_L 26S protease subunit RP 100.0 1.7E-42 5.9E-47 373.0 22.8 253 115-416 172-427 (437)
13 4b4t_H 26S protease regulatory 100.0 5.2E-42 1.8E-46 366.8 25.3 248 116-412 201-451 (467)
14 3cf2_A TER ATPase, transitiona 100.0 9.5E-42 3.2E-46 391.7 24.3 263 421-685 196-464 (806)
15 3cf0_A Transitional endoplasmi 100.0 6.8E-41 2.3E-45 350.3 28.3 282 417-700 3-301 (301)
16 4b4t_K 26S protease regulatory 100.0 3E-41 1E-45 362.9 25.6 247 116-411 164-414 (428)
17 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-40 5.6E-45 350.1 28.8 275 422-701 5-320 (322)
18 2x8a_A Nuclear valosin-contain 100.0 1.3E-40 4.4E-45 342.3 24.2 268 422-689 3-273 (274)
19 3eie_A Vacuolar protein sortin 100.0 2E-39 7E-44 342.5 24.4 278 419-701 8-319 (322)
20 2qp9_X Vacuolar protein sortin 100.0 6.3E-39 2.2E-43 342.7 26.1 276 421-701 43-352 (355)
21 1r6b_X CLPA protein; AAA+, N-t 100.0 4.9E-39 1.7E-43 378.4 20.6 446 121-656 183-722 (758)
22 3pxi_A Negative regulator of g 100.0 4E-38 1.4E-42 369.9 28.0 461 121-657 177-732 (758)
23 2zan_A Vacuolar protein sortin 100.0 5.4E-38 1.8E-42 345.1 21.6 277 420-701 125-442 (444)
24 1qvr_A CLPB protein; coiled co 100.0 1.7E-37 5.7E-42 368.4 17.7 474 121-657 167-827 (854)
25 3hu3_A Transitional endoplasmi 100.0 1.4E-35 4.7E-40 327.5 22.4 286 120-437 200-485 (489)
26 2ce7_A Cell division protein F 100.0 7.5E-35 2.6E-39 318.7 27.6 246 423-682 10-258 (476)
27 3h4m_A Proteasome-activating n 100.0 4.2E-34 1.4E-38 296.8 27.2 267 422-701 10-281 (285)
28 3b9p_A CG5977-PA, isoform A; A 100.0 1.8E-34 6.2E-39 301.5 22.2 276 421-701 13-293 (297)
29 3hu3_A Transitional endoplasmi 100.0 4.8E-34 1.6E-38 315.2 26.4 260 424-685 199-464 (489)
30 3d8b_A Fidgetin-like protein 1 100.0 1.8E-34 6.2E-39 308.7 22.1 275 422-701 77-355 (357)
31 2x8a_A Nuclear valosin-contain 100.0 3.2E-34 1.1E-38 294.6 20.7 262 118-417 4-270 (274)
32 1lv7_A FTSH; alpha/beta domain 100.0 3.5E-33 1.2E-37 285.4 28.2 246 423-682 6-254 (257)
33 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.6E-33 5.6E-38 296.6 24.8 231 117-366 5-237 (322)
34 3cf0_A Transitional endoplasmi 100.0 2.5E-33 8.5E-38 293.0 22.2 276 116-415 7-285 (301)
35 3vfd_A Spastin; ATPase, microt 100.0 5.8E-33 2E-37 301.0 25.3 279 418-701 104-386 (389)
36 3eie_A Vacuolar protein sortin 100.0 5.3E-33 1.8E-37 293.4 23.2 281 115-416 9-303 (322)
37 2dhr_A FTSH; AAA+ protein, hex 100.0 1.3E-32 4.6E-37 302.6 24.6 246 424-683 26-274 (499)
38 2qp9_X Vacuolar protein sortin 100.0 1.6E-32 5.6E-37 293.0 24.4 283 115-416 42-336 (355)
39 2qz4_A Paraplegin; AAA+, SPG7, 100.0 7.8E-33 2.7E-37 283.5 20.8 245 424-682 1-251 (262)
40 1ixz_A ATP-dependent metallopr 100.0 2.3E-31 7.9E-36 271.4 26.2 244 421-678 8-254 (254)
41 2ce7_A Cell division protein F 100.0 6.9E-31 2.4E-35 287.3 26.2 246 118-413 10-258 (476)
42 2zan_A Vacuolar protein sortin 100.0 1.7E-31 5.9E-36 293.4 19.6 235 113-366 123-359 (444)
43 2r62_A Cell division protease 100.0 6E-33 2E-37 285.5 7.2 254 423-690 5-263 (268)
44 1iy2_A ATP-dependent metallopr 100.0 6.3E-30 2.2E-34 264.3 26.9 244 421-678 32-278 (278)
45 3h4m_A Proteasome-activating n 100.0 2.2E-30 7.6E-35 268.7 23.4 247 117-412 10-259 (285)
46 1lv7_A FTSH; alpha/beta domain 100.0 7.3E-30 2.5E-34 260.7 26.7 226 118-361 6-234 (257)
47 2qz4_A Paraplegin; AAA+, SPG7, 100.0 2.2E-29 7.7E-34 257.7 21.2 224 120-361 2-231 (262)
48 3d8b_A Fidgetin-like protein 1 100.0 7E-29 2.4E-33 265.4 24.2 261 118-416 78-339 (357)
49 3vfd_A Spastin; ATPase, microt 100.0 5.1E-29 1.7E-33 270.0 22.4 262 115-414 106-368 (389)
50 2dhr_A FTSH; AAA+ protein, hex 100.0 5.6E-29 1.9E-33 273.8 21.3 246 119-414 26-274 (499)
51 3b9p_A CG5977-PA, isoform A; A 100.0 1.2E-28 4.1E-33 257.3 20.2 261 118-415 15-276 (297)
52 1ixz_A ATP-dependent metallopr 100.0 6.5E-28 2.2E-32 245.8 25.0 228 116-361 8-238 (254)
53 1ypw_A Transitional endoplasmi 100.0 8E-28 2.7E-32 281.8 26.6 261 422-684 197-463 (806)
54 2c9o_A RUVB-like 1; hexameric 100.0 1.1E-29 3.7E-34 280.6 8.7 365 119-681 32-438 (456)
55 1iy2_A ATP-dependent metallopr 100.0 1.2E-26 4.1E-31 239.6 25.0 227 117-361 33-262 (278)
56 2r62_A Cell division protease 99.9 2E-29 6.7E-34 259.2 1.0 249 118-415 5-257 (268)
57 1g41_A Heat shock protein HSLU 99.9 1.4E-25 4.7E-30 241.7 23.4 391 124-692 15-442 (444)
58 3t15_A Ribulose bisphosphate c 99.9 3.2E-26 1.1E-30 237.8 15.6 173 459-639 32-221 (293)
59 3t15_A Ribulose bisphosphate c 99.9 7.8E-24 2.7E-28 219.8 10.6 185 154-350 32-222 (293)
60 2c9o_A RUVB-like 1; hexameric 99.9 7.2E-25 2.5E-29 242.0 -3.2 201 424-644 32-262 (456)
61 3syl_A Protein CBBX; photosynt 99.9 8E-22 2.7E-26 206.7 15.0 218 428-655 30-268 (309)
62 3syl_A Protein CBBX; photosynt 99.8 2.2E-20 7.5E-25 195.7 14.5 216 123-365 29-268 (309)
63 3uk6_A RUVB-like 2; hexameric 99.8 8.7E-20 3E-24 196.0 15.3 220 424-680 39-330 (368)
64 3m6a_A ATP-dependent protease 99.8 4.6E-20 1.6E-24 207.2 13.1 236 423-682 75-343 (543)
65 4akg_A Glutathione S-transfera 99.8 6.9E-19 2.4E-23 224.0 24.6 418 157-616 1266-1795(2695)
66 1ofh_A ATP-dependent HSL prote 99.8 1.9E-19 6.5E-24 188.4 15.3 246 429-681 15-300 (310)
67 3hws_A ATP-dependent CLP prote 99.8 8.1E-20 2.8E-24 195.9 12.1 245 430-680 16-349 (363)
68 3cmw_A Protein RECA, recombina 99.8 8.3E-20 2.8E-24 223.0 12.5 151 424-575 1015-1218(1706)
69 1g41_A Heat shock protein HSLU 99.8 2E-20 7E-25 201.5 4.9 169 429-606 15-188 (444)
70 3pfi_A Holliday junction ATP-d 99.8 6E-18 2E-22 179.5 22.0 216 424-682 24-256 (338)
71 3pfi_A Holliday junction ATP-d 99.8 1.8E-17 6.1E-22 175.8 21.3 208 121-359 26-234 (338)
72 1d2n_A N-ethylmaleimide-sensit 99.8 5E-18 1.7E-22 174.4 15.4 201 455-683 56-267 (272)
73 3uk6_A RUVB-like 2; hexameric 99.8 1.1E-17 3.7E-22 179.7 18.6 203 118-361 38-312 (368)
74 3pvs_A Replication-associated 99.7 7.5E-18 2.6E-22 184.1 15.3 226 425-700 22-264 (447)
75 1ofh_A ATP-dependent HSL prote 99.7 1E-17 3.6E-22 175.1 15.8 225 124-359 15-273 (310)
76 1um8_A ATP-dependent CLP prote 99.7 9.2E-18 3.2E-22 180.7 14.9 245 429-680 21-365 (376)
77 1hqc_A RUVB; extended AAA-ATPa 99.7 5.7E-17 1.9E-21 170.8 20.6 215 425-681 8-239 (324)
78 3m6a_A ATP-dependent protease 99.7 2.1E-18 7.2E-23 193.6 9.4 219 122-364 79-320 (543)
79 1d2n_A N-ethylmaleimide-sensit 99.7 3.7E-17 1.3E-21 167.8 13.8 205 123-356 32-246 (272)
80 4fcw_A Chaperone protein CLPB; 99.7 2.1E-17 7.2E-22 173.1 12.1 209 429-656 17-285 (311)
81 3hws_A ATP-dependent CLP prote 99.7 7.6E-17 2.6E-21 172.7 15.1 236 125-362 16-325 (363)
82 3pxg_A Negative regulator of g 99.7 2.6E-17 9E-22 181.7 11.1 182 121-357 177-383 (468)
83 1jbk_A CLPB protein; beta barr 99.7 3.9E-17 1.3E-21 157.6 10.2 157 122-318 20-194 (195)
84 1hqc_A RUVB; extended AAA-ATPa 99.7 8.7E-16 3E-20 161.7 19.0 206 120-355 8-214 (324)
85 1g8p_A Magnesium-chelatase 38 99.7 4.4E-16 1.5E-20 165.8 15.0 220 424-680 19-322 (350)
86 3cmw_A Protein RECA, recombina 99.7 6.3E-16 2.2E-20 189.1 18.2 139 118-256 1014-1205(1706)
87 2v1u_A Cell division control p 99.7 1.5E-15 5.1E-20 163.7 19.3 223 429-681 19-277 (387)
88 3vkg_A Dynein heavy chain, cyt 99.7 2.5E-15 8.6E-20 192.1 24.1 417 157-616 1303-1832(3245)
89 3pvs_A Replication-associated 99.7 5E-16 1.7E-20 169.7 15.4 181 121-357 23-220 (447)
90 2z4s_A Chromosomal replication 99.7 5.2E-16 1.8E-20 169.9 15.5 194 463-682 130-334 (440)
91 1l8q_A Chromosomal replication 99.7 2E-15 7E-20 158.9 18.7 197 119-358 6-214 (324)
92 2chg_A Replication factor C sm 99.7 3E-15 1E-19 147.9 18.8 201 424-678 12-224 (226)
93 1sxj_A Activator 1 95 kDa subu 99.7 1.8E-16 6.1E-21 177.5 11.1 224 423-679 33-273 (516)
94 3te6_A Regulatory protein SIR3 99.6 3.2E-16 1.1E-20 162.3 11.4 201 460-679 42-314 (318)
95 4fcw_A Chaperone protein CLPB; 99.6 1.7E-15 5.8E-20 158.5 16.2 217 123-366 16-285 (311)
96 1l8q_A Chromosomal replication 99.6 1.6E-15 5.5E-20 159.7 16.1 192 462-680 36-240 (324)
97 3u61_B DNA polymerase accessor 99.6 5.2E-16 1.8E-20 163.5 11.8 184 424-647 21-218 (324)
98 1jbk_A CLPB protein; beta barr 99.6 3.7E-16 1.3E-20 150.7 9.2 159 425-606 18-194 (195)
99 1r6b_X CLPA protein; AAA+, N-t 99.6 1E-14 3.5E-19 171.3 23.0 228 425-681 182-434 (758)
100 2z4s_A Chromosomal replication 99.6 2.4E-15 8.2E-20 164.6 16.1 201 118-359 99-313 (440)
101 2chg_A Replication factor C sm 99.6 8.9E-15 3.1E-19 144.5 18.5 183 120-355 13-207 (226)
102 1in4_A RUVB, holliday junction 99.6 7.3E-14 2.5E-18 147.5 25.9 214 425-681 21-251 (334)
103 2qby_B CDC6 homolog 3, cell di 99.6 4.7E-15 1.6E-19 159.8 17.1 213 429-681 20-271 (384)
104 1njg_A DNA polymerase III subu 99.6 5.8E-15 2E-19 147.9 16.5 202 425-678 19-249 (250)
105 3u61_B DNA polymerase accessor 99.6 2.9E-15 9.9E-20 157.8 14.5 171 120-342 22-207 (324)
106 2r44_A Uncharacterized protein 99.6 1.8E-15 6.1E-20 159.9 12.7 210 428-680 26-297 (331)
107 3pxg_A Negative regulator of g 99.6 2.7E-15 9.2E-20 165.6 14.4 187 425-649 176-385 (468)
108 2p65_A Hypothetical protein PF 99.6 1.1E-15 3.6E-20 146.9 9.4 150 122-310 20-187 (187)
109 3pxi_A Negative regulator of g 99.6 1.2E-14 4.2E-19 170.4 20.0 213 124-365 491-730 (758)
110 1um8_A ATP-dependent CLP prote 99.6 4.5E-15 1.6E-19 159.6 14.9 237 124-362 21-342 (376)
111 1qvr_A CLPB protein; coiled co 99.6 2.6E-15 9E-20 178.0 14.0 203 425-650 166-393 (854)
112 3bos_A Putative DNA replicatio 99.6 6.6E-15 2.3E-19 147.6 14.7 181 462-678 51-241 (242)
113 3bos_A Putative DNA replicatio 99.6 3.4E-14 1.2E-18 142.4 18.8 189 119-359 23-224 (242)
114 1fnn_A CDC6P, cell division co 99.6 5.3E-14 1.8E-18 151.8 21.7 226 429-689 17-283 (389)
115 2v1u_A Cell division control p 99.6 1.9E-14 6.5E-19 155.1 17.6 204 121-359 16-256 (387)
116 1g8p_A Magnesium-chelatase 38 99.6 2E-14 7E-19 152.8 17.1 171 118-320 18-230 (350)
117 3te6_A Regulatory protein SIR3 99.6 4E-15 1.4E-19 154.0 11.2 160 126-325 22-214 (318)
118 1njg_A DNA polymerase III subu 99.6 4.9E-14 1.7E-18 141.0 18.3 184 120-355 19-231 (250)
119 2chq_A Replication factor C sm 99.6 4.8E-15 1.6E-19 155.4 11.2 186 423-645 11-204 (319)
120 1sxj_A Activator 1 95 kDa subu 99.6 7.1E-15 2.4E-19 164.5 13.0 200 120-351 35-251 (516)
121 1sxj_B Activator 1 37 kDa subu 99.6 1.5E-14 5.3E-19 151.8 13.6 167 424-625 16-195 (323)
122 1sxj_D Activator 1 41 kDa subu 99.6 7.3E-14 2.5E-18 148.7 18.5 209 424-680 32-263 (353)
123 2r44_A Uncharacterized protein 99.5 3.5E-14 1.2E-18 149.9 15.3 162 122-324 25-200 (331)
124 2chq_A Replication factor C sm 99.5 1.8E-14 6.2E-19 151.0 12.9 186 120-354 13-206 (319)
125 2qby_A CDC6 homolog 1, cell di 99.5 7.2E-14 2.5E-18 150.3 17.7 222 428-681 19-273 (386)
126 1sxj_D Activator 1 41 kDa subu 99.5 3.5E-14 1.2E-18 151.2 14.1 184 120-356 33-239 (353)
127 2p65_A Hypothetical protein PF 99.5 1.1E-14 3.7E-19 139.8 9.1 150 426-598 19-187 (187)
128 4akg_A Glutathione S-transfera 99.5 4E-13 1.4E-17 171.6 25.5 366 158-598 645-1075(2695)
129 1iqp_A RFCS; clamp loader, ext 99.5 9.2E-14 3.2E-18 146.1 16.0 186 120-354 21-214 (327)
130 1sxj_B Activator 1 37 kDa subu 99.5 6.4E-14 2.2E-18 147.1 14.6 182 120-354 17-211 (323)
131 1jr3_A DNA polymerase III subu 99.5 1.2E-13 4.1E-18 148.2 16.9 185 425-646 12-225 (373)
132 1iqp_A RFCS; clamp loader, ext 99.5 3.2E-14 1.1E-18 149.6 12.2 167 424-625 20-198 (327)
133 2qby_B CDC6 homolog 3, cell di 99.5 1.3E-13 4.5E-18 148.5 16.9 195 123-358 19-251 (384)
134 1in4_A RUVB, holliday junction 99.5 6.3E-13 2.2E-17 140.3 20.1 207 122-359 23-230 (334)
135 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 4.2E-14 1.4E-18 155.7 11.4 205 430-674 23-280 (500)
136 1jr3_A DNA polymerase III subu 99.5 2.7E-13 9.2E-18 145.5 17.0 184 121-356 13-225 (373)
137 2bjv_A PSP operon transcriptio 99.5 3.4E-14 1.2E-18 145.1 9.4 202 121-358 3-239 (265)
138 2bjv_A PSP operon transcriptio 99.5 3.9E-14 1.3E-18 144.6 9.9 194 427-649 4-240 (265)
139 1sxj_E Activator 1 40 kDa subu 99.5 2.7E-13 9.1E-18 144.5 15.0 185 424-646 9-238 (354)
140 3f9v_A Minichromosome maintena 99.5 4.2E-14 1.4E-18 160.1 7.9 224 429-682 295-589 (595)
141 1ojl_A Transcriptional regulat 99.5 9.9E-14 3.4E-18 144.3 10.2 198 124-358 2-234 (304)
142 2qby_A CDC6 homolog 1, cell di 99.5 8.8E-13 3E-17 141.8 17.9 203 121-359 17-252 (386)
143 1ojl_A Transcriptional regulat 99.4 1.6E-13 5.5E-18 142.7 10.3 188 430-649 3-235 (304)
144 1sxj_E Activator 1 40 kDa subu 99.4 8.8E-13 3E-17 140.5 15.8 186 120-355 10-240 (354)
145 1fnn_A CDC6P, cell division co 99.4 1.4E-12 4.7E-17 140.7 17.2 201 122-359 15-254 (389)
146 3n70_A Transport activator; si 99.4 4.3E-14 1.5E-18 130.3 4.2 87 125-232 2-91 (145)
147 1sxj_C Activator 1 40 kDa subu 99.4 2.4E-12 8.3E-17 136.3 16.4 154 121-326 22-186 (340)
148 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 5.4E-13 1.8E-17 146.9 11.0 161 124-322 22-196 (500)
149 3n70_A Transport activator; si 99.4 3.7E-13 1.3E-17 124.0 8.2 112 430-575 2-116 (145)
150 3co5_A Putative two-component 99.4 2.4E-14 8.3E-19 131.6 -0.1 112 125-287 5-116 (143)
151 1sxj_C Activator 1 40 kDa subu 99.4 2.2E-12 7.5E-17 136.6 15.0 181 424-645 20-212 (340)
152 3cmu_A Protein RECA, recombina 99.4 4.5E-12 1.6E-16 156.8 18.0 115 459-574 1423-1562(2050)
153 1a5t_A Delta prime, HOLB; zinc 99.4 2.9E-12 1E-16 135.2 14.2 131 461-610 22-180 (334)
154 3f9v_A Minichromosome maintena 99.4 1.1E-13 3.7E-18 156.6 2.5 176 124-325 295-493 (595)
155 3k1j_A LON protease, ATP-depen 99.4 9.4E-13 3.2E-17 150.1 10.1 148 522-694 201-388 (604)
156 3co5_A Putative two-component 99.3 7.8E-13 2.7E-17 121.5 5.9 132 430-597 5-142 (143)
157 2gno_A DNA polymerase III, gam 99.3 8.3E-12 2.8E-16 129.4 12.8 125 463-610 18-152 (305)
158 1a5t_A Delta prime, HOLB; zinc 99.3 5.5E-11 1.9E-15 125.4 19.3 175 127-354 5-207 (334)
159 1w5s_A Origin recognition comp 99.3 2.5E-10 8.7E-15 123.8 21.5 206 429-651 22-275 (412)
160 3aji_B S6C, proteasome (prosom 99.2 8.7E-12 3E-16 102.7 6.7 82 598-693 2-83 (83)
161 2gno_A DNA polymerase III, gam 99.2 3.4E-11 1.2E-15 124.7 12.8 142 128-322 1-152 (305)
162 3vlf_B 26S protease regulatory 99.2 1.7E-11 5.7E-16 101.9 7.7 85 598-695 2-87 (88)
163 3vkg_A Dynein heavy chain, cyt 99.2 9.8E-10 3.4E-14 141.3 27.3 143 158-319 604-750 (3245)
164 3cmu_A Protein RECA, recombina 99.2 4.1E-12 1.4E-16 157.2 3.8 116 459-574 728-868 (2050)
165 2krk_A 26S protease regulatory 99.2 2.1E-11 7.3E-16 100.5 6.6 77 594-683 8-84 (86)
166 3kw6_A 26S protease regulatory 99.2 4.2E-11 1.4E-15 97.3 7.7 75 595-682 1-75 (78)
167 3k1j_A LON protease, ATP-depen 99.1 6.5E-11 2.2E-15 134.8 8.3 50 120-184 37-86 (604)
168 1w5s_A Origin recognition comp 99.1 7.8E-10 2.7E-14 120.0 16.3 209 122-359 20-273 (412)
169 2dzn_B 26S protease regulatory 99.0 1E-10 3.4E-15 95.9 4.0 81 600-693 1-82 (82)
170 1ny5_A Transcriptional regulat 99.0 5.4E-10 1.9E-14 120.0 9.0 199 123-358 136-369 (387)
171 1ny5_A Transcriptional regulat 99.0 8.2E-10 2.8E-14 118.6 9.3 183 462-677 159-384 (387)
172 3ec2_A DNA replication protein 98.9 1.9E-09 6.5E-14 102.8 8.8 98 120-229 6-112 (180)
173 3ec2_A DNA replication protein 98.9 2.7E-09 9.3E-14 101.7 7.9 107 458-576 33-144 (180)
174 3dzd_A Transcriptional regulat 98.9 2.7E-09 9.3E-14 113.6 7.9 196 124-357 129-359 (368)
175 3dzd_A Transcriptional regulat 98.8 8.9E-09 3E-13 109.7 11.3 169 462-648 151-360 (368)
176 2vhj_A Ntpase P4, P4; non- hyd 98.8 1.3E-09 4.3E-14 111.6 4.5 121 459-582 119-242 (331)
177 2kjq_A DNAA-related protein; s 98.8 3.4E-09 1.2E-13 97.6 6.6 107 462-596 35-147 (149)
178 2fna_A Conserved hypothetical 98.8 2.7E-07 9.4E-12 97.4 19.7 186 119-352 8-250 (357)
179 2qen_A Walker-type ATPase; unk 98.7 6.5E-07 2.2E-11 94.3 22.0 190 119-352 7-246 (350)
180 2kjq_A DNAA-related protein; s 98.7 7.2E-09 2.5E-13 95.4 5.7 59 157-230 35-96 (149)
181 2w58_A DNAI, primosome compone 98.7 1.9E-08 6.4E-13 97.7 8.1 99 121-230 22-128 (202)
182 3f8t_A Predicted ATPase involv 98.7 7.7E-08 2.6E-12 102.9 11.9 149 126-312 215-384 (506)
183 3f8t_A Predicted ATPase involv 98.6 3.2E-08 1.1E-12 105.8 7.7 216 431-682 215-485 (506)
184 2krk_A 26S protease regulatory 98.6 6E-08 2.1E-12 79.7 7.6 76 306-413 8-83 (86)
185 2vhj_A Ntpase P4, P4; non- hyd 98.6 6.5E-08 2.2E-12 99.0 8.2 78 154-233 119-198 (331)
186 3kw6_A 26S protease regulatory 98.6 1.2E-07 4E-12 76.7 8.1 74 307-412 1-74 (78)
187 1svm_A Large T antigen; AAA+ f 98.6 7E-08 2.4E-12 102.3 8.6 120 458-596 164-284 (377)
188 2r2a_A Uncharacterized protein 98.6 6.3E-08 2.2E-12 93.4 6.8 126 464-599 6-155 (199)
189 2w58_A DNAI, primosome compone 98.5 9.1E-09 3.1E-13 99.9 -0.2 70 464-535 55-128 (202)
190 2r2a_A Uncharacterized protein 98.5 5.7E-08 2E-12 93.7 4.8 126 159-311 6-155 (199)
191 1tue_A Replication protein E1; 98.5 1.6E-07 5.6E-12 89.5 6.6 33 154-186 54-86 (212)
192 2qgz_A Helicase loader, putati 98.5 1.5E-07 5E-12 97.7 6.3 97 121-229 121-226 (308)
193 2qen_A Walker-type ATPase; unk 98.4 4.1E-06 1.4E-10 88.1 17.3 162 427-614 10-220 (350)
194 2qgz_A Helicase loader, putati 98.4 9.9E-08 3.4E-12 99.0 4.3 72 462-535 151-227 (308)
195 3vlf_B 26S protease regulatory 98.4 6.5E-07 2.2E-11 74.0 8.2 75 310-416 2-76 (88)
196 1tf7_A KAIC; homohexamer, hexa 98.4 8.5E-06 2.9E-10 91.0 20.0 110 459-575 277-417 (525)
197 2fna_A Conserved hypothetical 98.4 2.1E-06 7E-11 90.6 14.2 158 464-634 31-243 (357)
198 1tue_A Replication protein E1; 98.4 2E-07 7E-12 88.8 5.3 111 459-597 54-179 (212)
199 1ye8_A Protein THEP1, hypothet 98.4 2.3E-06 8E-11 81.0 12.2 27 465-491 2-28 (178)
200 1svm_A Large T antigen; AAA+ f 98.3 3.9E-07 1.3E-11 96.6 4.8 120 153-308 164-284 (377)
201 3aji_B S6C, proteasome (prosom 98.3 1.2E-06 4E-11 71.7 6.1 75 310-416 2-76 (83)
202 1jr3_D DNA polymerase III, del 98.1 7.1E-06 2.4E-10 86.4 10.6 180 461-681 16-210 (343)
203 1u0j_A DNA replication protein 98.1 1.5E-05 5.1E-10 79.6 10.8 29 461-489 102-130 (267)
204 1u0j_A DNA replication protein 98.0 8.4E-06 2.9E-10 81.4 8.2 29 156-184 102-130 (267)
205 2dzn_B 26S protease regulatory 97.9 7.2E-06 2.5E-10 66.7 3.6 69 312-412 1-69 (82)
206 1ye8_A Protein THEP1, hypothet 97.9 5.8E-05 2E-09 71.3 10.3 27 160-186 2-28 (178)
207 1jr3_D DNA polymerase III, del 97.9 4.8E-05 1.7E-09 80.0 10.7 156 157-355 17-188 (343)
208 2w0m_A SSO2452; RECA, SSPF, un 97.8 1.9E-05 6.5E-10 77.8 6.8 109 459-575 19-168 (235)
209 1n0w_A DNA repair protein RAD5 97.8 4.5E-05 1.5E-09 75.7 9.2 78 459-536 20-133 (243)
210 2cvh_A DNA repair and recombin 97.8 6.1E-05 2.1E-09 73.4 9.9 40 459-498 16-55 (220)
211 3hr8_A Protein RECA; alpha and 97.8 8.6E-05 2.9E-09 77.8 11.1 114 459-572 57-195 (356)
212 1z6t_A APAF-1, apoptotic prote 97.8 0.00032 1.1E-08 79.4 16.8 171 121-345 121-322 (591)
213 2zr9_A Protein RECA, recombina 97.7 5.1E-05 1.8E-09 79.7 7.7 78 459-536 57-153 (349)
214 1xp8_A RECA protein, recombina 97.7 0.00011 3.9E-09 77.4 9.9 115 459-573 70-209 (366)
215 2ehv_A Hypothetical protein PH 97.7 0.00032 1.1E-08 69.8 12.6 26 154-179 26-51 (251)
216 4a74_A DNA repair and recombin 97.7 6.6E-05 2.3E-09 73.7 7.4 29 459-487 21-49 (231)
217 2ehv_A Hypothetical protein PH 97.7 7.5E-05 2.6E-09 74.4 7.9 129 459-595 26-206 (251)
218 2w0m_A SSO2452; RECA, SSPF, un 97.7 0.0002 7E-09 70.2 10.9 37 154-190 19-58 (235)
219 1qhx_A CPT, protein (chloramph 97.6 0.00012 4.2E-09 68.7 8.3 36 159-194 4-39 (178)
220 2orw_A Thymidine kinase; TMTK, 97.6 3.6E-05 1.2E-09 73.2 3.6 69 465-535 5-89 (184)
221 2cvh_A DNA repair and recombin 97.6 0.00029 1E-08 68.5 10.4 40 154-193 16-55 (220)
222 3jvv_A Twitching mobility prot 97.5 0.00016 5.6E-09 76.0 8.9 100 461-578 121-234 (356)
223 1n0w_A DNA repair protein RAD5 97.5 0.00028 9.4E-09 69.9 10.2 40 154-193 20-68 (243)
224 1u94_A RECA protein, recombina 97.5 0.00011 3.9E-09 77.1 7.4 115 459-573 59-198 (356)
225 2eyu_A Twitching motility prot 97.5 0.00024 8.4E-09 71.3 9.3 73 460-532 22-108 (261)
226 1v5w_A DMC1, meiotic recombina 97.5 0.00021 7.1E-09 75.1 9.1 116 459-574 118-273 (343)
227 4gp7_A Metallophosphoesterase; 97.5 5.6E-05 1.9E-09 70.9 4.1 21 462-482 8-28 (171)
228 2z43_A DNA repair and recombin 97.5 0.00012 4E-09 76.3 6.8 115 459-573 103-256 (324)
229 3rlf_A Maltose/maltodextrin im 97.5 0.00011 3.8E-09 77.5 6.5 27 461-487 27-53 (381)
230 3vaa_A Shikimate kinase, SK; s 97.5 6.9E-05 2.4E-09 72.1 4.4 36 154-189 21-56 (199)
231 3hr8_A Protein RECA; alpha and 97.5 0.00028 9.7E-09 73.9 9.4 78 154-231 57-153 (356)
232 1pzn_A RAD51, DNA repair and r 97.5 0.00023 7.8E-09 74.9 8.7 41 458-498 126-175 (349)
233 3fvq_A Fe(3+) IONS import ATP- 97.5 0.00015 5.3E-09 75.8 7.1 27 461-487 28-54 (359)
234 3sfz_A APAF-1, apoptotic pepti 97.4 0.0012 4E-08 81.5 16.2 172 120-345 120-322 (1249)
235 4a74_A DNA repair and recombin 97.4 0.00039 1.3E-08 68.1 9.5 29 154-182 21-49 (231)
236 3tui_C Methionine import ATP-b 97.4 0.00013 4.3E-09 76.6 5.9 28 460-487 51-78 (366)
237 3gfo_A Cobalt import ATP-bindi 97.4 0.00022 7.5E-09 72.2 7.4 27 461-487 32-58 (275)
238 2zr9_A Protein RECA, recombina 97.4 0.00059 2E-08 71.6 10.8 78 154-231 57-153 (349)
239 3trf_A Shikimate kinase, SK; a 97.4 9.7E-05 3.3E-09 70.0 4.2 32 158-189 5-36 (185)
240 1qhx_A CPT, protein (chloramph 97.4 0.00027 9.3E-09 66.3 7.2 34 464-497 4-37 (178)
241 2it1_A 362AA long hypothetical 97.3 0.00025 8.4E-09 74.6 7.0 27 461-487 27-53 (362)
242 2iut_A DNA translocase FTSK; n 97.3 0.0014 4.7E-08 72.4 13.0 75 523-607 344-420 (574)
243 3io5_A Recombination and repai 97.3 0.00055 1.9E-08 69.7 9.1 113 459-572 25-169 (333)
244 3lda_A DNA repair protein RAD5 97.3 0.00032 1.1E-08 74.9 7.8 116 459-574 174-327 (400)
245 2yyz_A Sugar ABC transporter, 97.3 0.00024 8.4E-09 74.5 6.8 27 461-487 27-53 (359)
246 2p5t_B PEZT; postsegregational 97.3 0.00075 2.6E-08 67.5 10.1 40 155-194 29-68 (253)
247 2ewv_A Twitching motility prot 97.3 0.00051 1.7E-08 72.8 9.1 78 455-532 128-219 (372)
248 1vpl_A ABC transporter, ATP-bi 97.3 0.00049 1.7E-08 68.9 8.5 28 460-487 38-65 (256)
249 1u94_A RECA protein, recombina 97.3 0.0013 4.5E-08 69.0 12.1 78 154-231 59-155 (356)
250 1z47_A CYSA, putative ABC-tran 97.3 0.00023 7.8E-09 74.6 6.3 27 461-487 39-65 (355)
251 4g1u_C Hemin import ATP-bindin 97.3 0.00026 9E-09 71.3 6.5 27 461-487 35-61 (266)
252 1xp8_A RECA protein, recombina 97.3 0.00062 2.1E-08 71.8 9.5 78 154-231 70-166 (366)
253 1v5w_A DMC1, meiotic recombina 97.3 0.00061 2.1E-08 71.5 9.3 40 154-193 118-166 (343)
254 2z43_A DNA repair and recombin 97.3 0.0009 3.1E-08 69.6 10.5 40 154-193 103-151 (324)
255 2rhm_A Putative kinase; P-loop 97.3 0.0002 6.8E-09 68.2 4.9 33 156-188 3-35 (193)
256 2ixe_A Antigen peptide transpo 97.3 0.00059 2E-08 68.9 8.5 28 460-487 42-69 (271)
257 1zp6_A Hypothetical protein AT 97.3 0.00017 5.8E-09 68.6 4.3 41 154-194 5-45 (191)
258 2i3b_A HCR-ntpase, human cance 97.3 0.00044 1.5E-08 65.8 7.1 23 465-487 3-25 (189)
259 2b8t_A Thymidine kinase; deoxy 97.3 0.00068 2.3E-08 66.1 8.6 70 465-535 14-102 (223)
260 2eyu_A Twitching motility prot 97.2 0.00018 6.1E-09 72.4 4.5 72 155-226 22-107 (261)
261 1g29_1 MALK, maltose transport 97.2 0.00032 1.1E-08 74.1 6.1 27 461-487 27-53 (372)
262 1v43_A Sugar-binding transport 97.2 0.00026 8.8E-09 74.7 5.4 27 461-487 35-61 (372)
263 1nlf_A Regulatory protein REPA 97.2 0.00068 2.3E-08 68.8 8.3 29 459-487 26-54 (279)
264 1gvn_B Zeta; postsegregational 97.2 0.00058 2E-08 69.7 7.7 41 156-196 31-71 (287)
265 3iij_A Coilin-interacting nucl 97.2 0.00023 7.7E-09 67.1 4.2 34 156-189 9-42 (180)
266 2ius_A DNA translocase FTSK; n 97.2 0.002 6.7E-08 70.6 12.1 75 524-608 299-375 (512)
267 3kb2_A SPBC2 prophage-derived 97.2 0.00025 8.4E-09 66.1 4.4 31 160-190 3-33 (173)
268 3tif_A Uncharacterized ABC tra 97.2 0.00044 1.5E-08 68.4 6.3 28 460-487 28-55 (235)
269 3dm5_A SRP54, signal recogniti 97.2 0.0016 5.4E-08 70.0 11.1 73 462-534 99-194 (443)
270 3d31_A Sulfate/molybdate ABC t 97.2 0.00034 1.2E-08 73.1 5.8 27 461-487 24-50 (348)
271 2a5y_B CED-4; apoptosis; HET: 97.2 0.0027 9.2E-08 71.1 13.6 44 127-180 131-174 (549)
272 1y63_A LMAJ004144AAA protein; 97.2 0.00021 7.3E-09 67.7 3.9 33 156-188 8-41 (184)
273 3vaa_A Shikimate kinase, SK; s 97.2 0.00022 7.5E-09 68.5 4.0 34 461-494 23-56 (199)
274 2r8r_A Sensor protein; KDPD, P 97.1 0.0031 1.1E-07 61.1 11.8 34 158-191 6-42 (228)
275 1zuh_A Shikimate kinase; alpha 97.1 0.00025 8.6E-09 66.0 4.1 30 159-188 8-37 (168)
276 2dr3_A UPF0273 protein PH0284; 97.1 0.0018 6E-08 64.1 10.5 38 154-191 19-59 (247)
277 1via_A Shikimate kinase; struc 97.1 0.00022 7.6E-09 66.9 3.6 29 160-188 6-34 (175)
278 2onk_A Molybdate/tungstate ABC 97.1 0.0002 6.9E-09 71.0 3.4 27 460-487 22-48 (240)
279 1vma_A Cell division protein F 97.1 0.0014 4.9E-08 67.2 9.9 73 155-227 101-196 (306)
280 1kag_A SKI, shikimate kinase I 97.1 0.00028 9.5E-09 65.9 4.2 29 159-187 5-33 (173)
281 2dr3_A UPF0273 protein PH0284; 97.1 0.0017 6E-08 64.1 10.3 38 459-496 19-59 (247)
282 3upu_A ATP-dependent DNA helic 97.1 0.0025 8.5E-08 69.6 12.2 23 465-487 47-69 (459)
283 1pzn_A RAD51, DNA repair and r 97.1 0.0008 2.8E-08 70.6 7.9 41 153-193 126-175 (349)
284 3upu_A ATP-dependent DNA helic 97.1 0.00061 2.1E-08 74.6 7.2 49 120-182 20-69 (459)
285 3trf_A Shikimate kinase, SK; a 97.1 0.00035 1.2E-08 66.1 4.6 32 463-494 5-36 (185)
286 2iyv_A Shikimate kinase, SK; t 97.1 0.00029 1E-08 66.6 3.9 29 160-188 4-32 (184)
287 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.0012 4E-08 66.3 8.6 39 158-196 4-45 (260)
288 3e1s_A Exodeoxyribonuclease V, 97.1 0.00023 7.8E-09 79.9 3.6 98 463-574 204-317 (574)
289 3jvv_A Twitching mobility prot 97.1 0.00015 5.2E-09 76.2 2.0 70 157-226 122-205 (356)
290 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00024 8.3E-09 73.8 3.4 55 127-190 2-56 (359)
291 2olj_A Amino acid ABC transpor 97.1 0.00064 2.2E-08 68.3 6.4 28 460-487 47-74 (263)
292 3nh6_A ATP-binding cassette SU 97.1 0.00074 2.5E-08 69.3 7.0 28 460-487 77-104 (306)
293 2orw_A Thymidine kinase; TMTK, 97.0 0.0003 1E-08 66.7 3.6 31 159-189 4-37 (184)
294 2pcj_A ABC transporter, lipopr 97.0 0.00075 2.6E-08 66.1 6.5 27 461-487 28-54 (224)
295 1oxx_K GLCV, glucose, ABC tran 97.0 0.00027 9.3E-09 74.1 3.4 27 461-487 29-55 (353)
296 1cr0_A DNA primase/helicase; R 97.0 0.0014 4.7E-08 67.2 8.7 30 458-487 30-59 (296)
297 2cdn_A Adenylate kinase; phosp 97.0 0.00042 1.4E-08 66.6 4.5 33 157-189 19-51 (201)
298 3io5_A Recombination and repai 97.0 0.0012 4E-08 67.3 7.8 77 154-231 25-125 (333)
299 2pjz_A Hypothetical protein ST 97.0 0.0025 8.4E-08 64.0 10.2 25 463-487 30-54 (263)
300 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00068 2.3E-08 70.6 6.2 73 461-533 169-251 (330)
301 2ze6_A Isopentenyl transferase 97.0 0.00044 1.5E-08 69.2 4.5 33 160-192 3-35 (253)
302 2rhm_A Putative kinase; P-loop 97.0 0.00049 1.7E-08 65.4 4.6 33 461-493 3-35 (193)
303 2cbz_A Multidrug resistance-as 97.0 0.0028 9.6E-08 62.6 10.3 28 460-487 28-55 (237)
304 3lda_A DNA repair protein RAD5 97.0 0.0018 6.1E-08 69.1 9.3 40 154-193 174-222 (400)
305 3crm_A TRNA delta(2)-isopenten 97.0 0.0011 3.8E-08 68.1 7.5 37 159-195 6-42 (323)
306 2ff7_A Alpha-hemolysin translo 97.0 0.0016 5.5E-08 64.7 8.5 27 461-487 33-59 (247)
307 1g6h_A High-affinity branched- 97.0 0.0016 5.6E-08 65.2 8.5 26 462-487 32-57 (257)
308 2zts_A Putative uncharacterize 97.0 0.0059 2E-07 60.3 12.7 38 154-191 26-67 (251)
309 2yz2_A Putative ABC transporte 97.0 0.0014 4.7E-08 66.1 7.9 119 458-594 28-211 (266)
310 3cm0_A Adenylate kinase; ATP-b 97.0 0.00044 1.5E-08 65.4 4.1 30 158-187 4-33 (186)
311 1gvn_B Zeta; postsegregational 97.0 0.0013 4.6E-08 66.9 7.9 39 461-499 31-69 (287)
312 1z6t_A APAF-1, apoptotic prote 97.0 0.0074 2.5E-07 68.1 14.9 46 429-485 124-169 (591)
313 2i1q_A DNA repair and recombin 97.0 0.00077 2.6E-08 70.0 6.2 114 459-572 94-256 (322)
314 2c95_A Adenylate kinase 1; tra 97.0 0.00041 1.4E-08 66.1 3.8 31 158-188 9-39 (196)
315 4gp7_A Metallophosphoesterase; 96.9 0.00071 2.4E-08 63.2 5.3 24 154-177 5-28 (171)
316 1aky_A Adenylate kinase; ATP:A 96.9 0.00057 1.9E-08 66.7 4.8 31 158-188 4-34 (220)
317 2pez_A Bifunctional 3'-phospho 96.9 0.00076 2.6E-08 63.4 5.4 38 157-194 4-44 (179)
318 2ewv_A Twitching motility prot 96.9 0.00029 9.8E-09 74.8 2.6 77 150-226 128-218 (372)
319 2r8r_A Sensor protein; KDPD, P 96.9 0.0098 3.4E-07 57.6 13.2 33 464-496 7-42 (228)
320 1tev_A UMP-CMP kinase; ploop, 96.9 0.00045 1.5E-08 65.7 3.8 35 158-194 3-37 (196)
321 2p5t_B PEZT; postsegregational 96.9 0.0013 4.6E-08 65.6 7.3 39 461-499 30-68 (253)
322 3dm5_A SRP54, signal recogniti 96.9 0.0041 1.4E-07 66.8 11.5 97 129-226 72-191 (443)
323 3t61_A Gluconokinase; PSI-biol 96.9 0.00064 2.2E-08 65.3 4.7 31 158-188 18-48 (202)
324 1kag_A SKI, shikimate kinase I 96.9 0.00064 2.2E-08 63.4 4.6 30 463-492 4-33 (173)
325 1e6c_A Shikimate kinase; phosp 96.9 0.00045 1.6E-08 64.4 3.5 29 160-188 4-32 (173)
326 1knq_A Gluconate kinase; ALFA/ 96.9 0.00068 2.3E-08 63.4 4.7 36 157-194 7-42 (175)
327 3lw7_A Adenylate kinase relate 96.9 0.00048 1.7E-08 64.1 3.6 28 160-188 3-30 (179)
328 2b8t_A Thymidine kinase; deoxy 96.9 0.00086 2.9E-08 65.4 5.5 72 158-230 12-102 (223)
329 1y63_A LMAJ004144AAA protein; 96.9 0.00056 1.9E-08 64.8 4.1 33 462-494 9-42 (184)
330 3kl4_A SRP54, signal recogniti 96.9 0.0022 7.4E-08 68.9 9.0 73 462-534 96-191 (433)
331 3gd7_A Fusion complex of cysti 96.9 0.002 6.7E-08 68.4 8.6 28 460-487 44-71 (390)
332 1zd8_A GTP:AMP phosphotransfer 96.9 0.00043 1.5E-08 67.9 3.4 32 157-188 6-37 (227)
333 4eun_A Thermoresistant glucoki 96.9 0.00072 2.5E-08 64.9 4.8 37 156-194 27-63 (200)
334 1s96_A Guanylate kinase, GMP k 96.9 0.00096 3.3E-08 65.1 5.7 102 460-586 13-151 (219)
335 3umf_A Adenylate kinase; rossm 96.9 0.00069 2.4E-08 65.8 4.6 40 155-196 26-65 (217)
336 2ghi_A Transport protein; mult 96.9 0.0045 1.5E-07 62.0 10.8 114 458-594 41-226 (260)
337 2nq2_C Hypothetical ABC transp 96.9 0.00094 3.2E-08 66.7 5.8 27 461-487 29-55 (253)
338 1zp6_A Hypothetical protein AT 96.9 0.00045 1.5E-08 65.6 3.3 40 460-499 6-45 (191)
339 3be4_A Adenylate kinase; malar 96.9 0.00042 1.4E-08 67.5 3.1 30 159-188 6-35 (217)
340 3kb2_A SPBC2 prophage-derived 96.9 0.00063 2.1E-08 63.3 4.2 31 465-495 3-33 (173)
341 1vma_A Cell division protein F 96.9 0.0028 9.6E-08 65.0 9.4 96 437-533 79-197 (306)
342 3iij_A Coilin-interacting nucl 96.9 0.0007 2.4E-08 63.7 4.5 33 462-494 10-42 (180)
343 1ji0_A ABC transporter; ATP bi 96.9 0.00083 2.8E-08 66.6 5.2 119 458-594 27-212 (240)
344 3sfz_A APAF-1, apoptotic pepti 96.9 0.011 3.7E-07 72.8 16.5 166 429-633 124-320 (1249)
345 2vli_A Antibiotic resistance p 96.9 0.0005 1.7E-08 64.7 3.4 30 158-187 5-34 (183)
346 2pt5_A Shikimate kinase, SK; a 96.9 0.00065 2.2E-08 63.0 4.1 29 160-188 2-30 (168)
347 3dl0_A Adenylate kinase; phosp 96.8 0.00059 2E-08 66.3 3.9 30 160-189 2-31 (216)
348 1via_A Shikimate kinase; struc 96.8 0.0007 2.4E-08 63.4 4.2 29 465-493 6-34 (175)
349 3uie_A Adenylyl-sulfate kinase 96.8 0.001 3.6E-08 63.8 5.5 39 156-194 23-64 (200)
350 2ihy_A ABC transporter, ATP-bi 96.8 0.00069 2.4E-08 68.7 4.3 119 458-594 42-236 (279)
351 1kht_A Adenylate kinase; phosp 96.8 0.00067 2.3E-08 64.3 3.9 25 159-183 4-28 (192)
352 3fb4_A Adenylate kinase; psych 96.8 0.00068 2.3E-08 65.8 4.0 30 160-189 2-31 (216)
353 1ak2_A Adenylate kinase isoenz 96.8 0.00089 3E-08 66.0 4.9 31 158-188 16-46 (233)
354 1nlf_A Regulatory protein REPA 96.8 0.0055 1.9E-07 62.0 10.9 29 154-182 26-54 (279)
355 2bwj_A Adenylate kinase 5; pho 96.8 0.0006 2E-08 65.1 3.5 35 158-194 12-46 (199)
356 2d2e_A SUFC protein; ABC-ATPas 96.8 0.0028 9.6E-08 63.1 8.5 106 458-578 24-206 (250)
357 1b0u_A Histidine permease; ABC 96.8 0.00076 2.6E-08 67.8 4.3 109 458-578 27-216 (262)
358 1zuh_A Shikimate kinase; alpha 96.8 0.00079 2.7E-08 62.5 4.1 31 464-494 8-38 (168)
359 1ly1_A Polynucleotide kinase; 96.8 0.00061 2.1E-08 63.9 3.4 31 159-191 3-34 (181)
360 3tlx_A Adenylate kinase 2; str 96.8 0.00072 2.5E-08 67.2 4.0 37 157-195 28-64 (243)
361 1sgw_A Putative ABC transporte 96.8 0.0028 9.6E-08 61.4 8.0 105 458-578 30-196 (214)
362 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.0024 8E-08 64.1 7.8 66 463-530 4-79 (260)
363 3e1s_A Exodeoxyribonuclease V, 96.8 0.00074 2.5E-08 75.8 4.4 34 158-191 204-240 (574)
364 2fz4_A DNA repair protein RAD2 96.8 0.0016 5.4E-08 64.4 6.3 33 465-497 110-142 (237)
365 2iyv_A Shikimate kinase, SK; t 96.8 0.00095 3.2E-08 63.0 4.5 30 465-494 4-33 (184)
366 2zts_A Putative uncharacterize 96.8 0.0023 8E-08 63.3 7.7 38 459-496 26-67 (251)
367 1qf9_A UMP/CMP kinase, protein 96.8 0.00078 2.7E-08 63.9 4.0 31 158-188 6-36 (194)
368 3sr0_A Adenylate kinase; phosp 96.8 0.00085 2.9E-08 64.7 4.2 34 160-195 2-35 (206)
369 2px0_A Flagellar biosynthesis 96.8 0.006 2.1E-07 62.3 10.8 67 462-530 104-190 (296)
370 1g5t_A COB(I)alamin adenosyltr 96.8 0.006 2E-07 57.8 9.9 102 464-575 29-163 (196)
371 1ukz_A Uridylate kinase; trans 96.8 0.00077 2.6E-08 64.7 3.8 32 157-188 14-45 (203)
372 1zak_A Adenylate kinase; ATP:A 96.8 0.00068 2.3E-08 66.2 3.5 35 158-194 5-39 (222)
373 1g5t_A COB(I)alamin adenosyltr 96.7 0.0074 2.5E-07 57.1 10.4 33 157-189 27-62 (196)
374 1ex7_A Guanylate kinase; subst 96.7 0.0019 6.3E-08 61.1 6.2 25 159-183 2-26 (186)
375 3crm_A TRNA delta(2)-isopenten 96.7 0.0021 7E-08 66.2 6.9 35 464-498 6-40 (323)
376 3kl4_A SRP54, signal recogniti 96.7 0.0042 1.4E-07 66.7 9.6 35 157-191 96-133 (433)
377 2iut_A DNA translocase FTSK; n 96.7 0.011 3.6E-07 65.4 12.9 40 278-319 379-420 (574)
378 2r6a_A DNAB helicase, replicat 96.7 0.0024 8.2E-08 69.6 7.6 38 459-496 199-240 (454)
379 3cm0_A Adenylate kinase; ATP-b 96.7 0.001 3.6E-08 62.7 4.1 31 463-493 4-34 (186)
380 2i1q_A DNA repair and recombin 96.7 0.0035 1.2E-07 65.0 8.4 28 154-181 94-121 (322)
381 3ozx_A RNAse L inhibitor; ATP 96.7 0.0017 5.8E-08 72.1 6.3 26 157-182 24-49 (538)
382 3gfo_A Cobalt import ATP-bindi 96.7 0.0057 2E-07 61.7 9.7 30 153-182 29-58 (275)
383 2cdn_A Adenylate kinase; phosp 96.7 0.0015 5.2E-08 62.6 5.2 32 463-494 20-51 (201)
384 1aky_A Adenylate kinase; ATP:A 96.6 0.0014 4.7E-08 63.9 4.9 32 463-494 4-35 (220)
385 2ze6_A Isopentenyl transferase 96.6 0.0012 4E-08 66.1 4.3 32 465-496 3-34 (253)
386 1nks_A Adenylate kinase; therm 96.6 0.0011 3.9E-08 62.7 4.1 33 160-192 3-38 (194)
387 3umf_A Adenylate kinase; rossm 96.6 0.0015 5.3E-08 63.3 4.9 38 461-500 27-64 (217)
388 2c95_A Adenylate kinase 1; tra 96.6 0.0014 4.8E-08 62.3 4.5 33 462-494 8-40 (196)
389 2qi9_C Vitamin B12 import ATP- 96.6 0.00089 3E-08 66.7 3.2 109 458-578 21-196 (249)
390 1e6c_A Shikimate kinase; phosp 96.6 0.0013 4.5E-08 61.2 4.3 29 465-493 4-32 (173)
391 3be4_A Adenylate kinase; malar 96.6 0.0012 4.3E-08 64.1 4.2 32 463-494 5-36 (217)
392 3nwj_A ATSK2; P loop, shikimat 96.6 0.00085 2.9E-08 66.8 3.1 31 158-188 48-78 (250)
393 3rlf_A Maltose/maltodextrin im 96.6 0.0082 2.8E-07 63.2 10.7 30 153-182 24-53 (381)
394 2v54_A DTMP kinase, thymidylat 96.6 0.0015 5.1E-08 62.6 4.7 33 158-190 4-37 (204)
395 1e4v_A Adenylate kinase; trans 96.6 0.0013 4.6E-08 63.7 4.4 30 160-189 2-31 (214)
396 2pbr_A DTMP kinase, thymidylat 96.6 0.0017 5.7E-08 61.6 5.0 31 160-190 2-35 (195)
397 2ius_A DNA translocase FTSK; n 96.6 0.022 7.5E-07 62.4 14.3 41 278-320 333-375 (512)
398 4a82_A Cystic fibrosis transme 96.6 0.0037 1.3E-07 70.3 8.4 28 460-487 364-391 (578)
399 3lw7_A Adenylate kinase relate 96.6 0.0015 5E-08 60.7 4.3 29 465-494 3-31 (179)
400 2r6a_A DNAB helicase, replicat 96.6 0.0081 2.8E-07 65.4 10.8 38 154-191 199-240 (454)
401 3thx_B DNA mismatch repair pro 96.6 0.0064 2.2E-07 71.4 10.5 109 462-579 672-800 (918)
402 3fvq_A Fe(3+) IONS import ATP- 96.6 0.0088 3E-07 62.5 10.5 30 153-182 25-54 (359)
403 2fz4_A DNA repair protein RAD2 96.5 0.0021 7.3E-08 63.4 5.5 34 159-192 109-142 (237)
404 1tev_A UMP-CMP kinase; ploop, 96.5 0.0016 5.6E-08 61.7 4.6 31 463-493 3-33 (196)
405 1cke_A CK, MSSA, protein (cyti 96.5 0.0016 5.5E-08 63.6 4.6 34 159-194 6-39 (227)
406 2a5y_B CED-4; apoptosis; HET: 96.5 0.028 9.5E-07 62.8 15.3 144 433-611 132-307 (549)
407 2jaq_A Deoxyguanosine kinase; 96.5 0.0015 5.1E-08 62.5 4.2 28 160-187 2-29 (205)
408 1qf9_A UMP/CMP kinase, protein 96.5 0.0019 6.4E-08 61.1 4.9 32 463-494 6-37 (194)
409 3sr0_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 62.7 4.5 34 465-500 2-35 (206)
410 2vli_A Antibiotic resistance p 96.5 0.0013 4.4E-08 61.9 3.6 30 463-492 5-34 (183)
411 3t61_A Gluconokinase; PSI-biol 96.5 0.0019 6.5E-08 61.9 4.8 31 463-493 18-48 (202)
412 2q6t_A DNAB replication FORK h 96.5 0.013 4.4E-07 63.6 12.0 38 154-191 196-237 (444)
413 3thx_B DNA mismatch repair pro 96.5 0.0066 2.3E-07 71.3 10.1 27 155-181 670-696 (918)
414 1w36_D RECD, exodeoxyribonucle 96.5 0.0046 1.6E-07 69.9 8.6 24 464-487 165-188 (608)
415 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0018 6.1E-08 72.1 5.1 27 461-487 45-71 (538)
416 2xb4_A Adenylate kinase; ATP-b 96.5 0.0016 5.6E-08 63.6 4.3 33 160-194 2-34 (223)
417 1zd8_A GTP:AMP phosphotransfer 96.5 0.0017 5.7E-08 63.6 4.3 33 462-494 6-38 (227)
418 4eun_A Thermoresistant glucoki 96.5 0.002 6.9E-08 61.7 4.8 36 462-499 28-63 (200)
419 3bh0_A DNAB-like replicative h 96.5 0.018 6.3E-07 59.3 12.4 38 154-191 64-104 (315)
420 2yhs_A FTSY, cell division pro 96.5 0.01 3.6E-07 64.3 10.7 29 154-182 289-317 (503)
421 1knq_A Gluconate kinase; ALFA/ 96.5 0.0021 7.3E-08 59.9 4.7 31 463-493 8-38 (175)
422 3qf4_B Uncharacterized ABC tra 96.5 0.0066 2.2E-07 68.6 9.6 29 459-487 377-405 (598)
423 1ak2_A Adenylate kinase isoenz 96.5 0.0022 7.5E-08 63.1 5.0 32 463-494 16-47 (233)
424 3a8t_A Adenylate isopentenyltr 96.5 0.0013 4.6E-08 67.8 3.5 40 158-197 40-79 (339)
425 1kht_A Adenylate kinase; phosp 96.5 0.0017 5.8E-08 61.4 4.0 25 464-488 4-28 (192)
426 2z0h_A DTMP kinase, thymidylat 96.5 0.0022 7.6E-08 60.9 4.8 29 161-189 3-34 (197)
427 2yvu_A Probable adenylyl-sulfa 96.4 0.0037 1.3E-07 59.0 6.3 39 156-194 11-52 (186)
428 2bbw_A Adenylate kinase 4, AK4 96.4 0.0022 7.5E-08 63.7 4.9 30 158-187 27-56 (246)
429 2if2_A Dephospho-COA kinase; a 96.4 0.0013 4.3E-08 63.2 3.0 33 160-195 3-35 (204)
430 2pt5_A Shikimate kinase, SK; a 96.4 0.0021 7E-08 59.5 4.3 29 465-493 2-30 (168)
431 3dl0_A Adenylate kinase; phosp 96.4 0.0019 6.4E-08 62.7 4.2 30 465-494 2-31 (216)
432 3qf4_A ABC transporter, ATP-bi 96.4 0.003 1E-07 71.2 6.4 28 460-487 366-393 (587)
433 2qor_A Guanylate kinase; phosp 96.4 0.0026 8.9E-08 61.1 5.1 29 155-183 9-37 (204)
434 3foz_A TRNA delta(2)-isopenten 96.4 0.0047 1.6E-07 62.8 7.1 40 158-197 10-49 (316)
435 2bwj_A Adenylate kinase 5; pho 96.4 0.0022 7.5E-08 61.1 4.5 32 463-494 12-43 (199)
436 3fb4_A Adenylate kinase; psych 96.4 0.002 6.9E-08 62.4 4.3 30 465-494 2-31 (216)
437 1ly1_A Polynucleotide kinase; 96.4 0.0015 5E-08 61.2 3.2 28 464-491 3-31 (181)
438 3exa_A TRNA delta(2)-isopenten 96.4 0.0048 1.6E-07 62.8 7.1 39 159-197 4-42 (322)
439 3tlx_A Adenylate kinase 2; str 96.4 0.0023 7.9E-08 63.5 4.8 34 461-494 27-60 (243)
440 1zak_A Adenylate kinase; ATP:A 96.4 0.0019 6.4E-08 63.1 4.0 31 463-493 5-35 (222)
441 3r20_A Cytidylate kinase; stru 96.4 0.0023 8E-08 62.7 4.6 35 158-194 9-43 (233)
442 2xau_A PRE-mRNA-splicing facto 96.4 0.0031 1.1E-07 73.3 6.4 23 464-486 110-132 (773)
443 3bh0_A DNAB-like replicative h 96.4 0.014 4.6E-07 60.3 10.6 38 459-496 64-104 (315)
444 1kgd_A CASK, peripheral plasma 96.4 0.0022 7.5E-08 60.4 4.1 27 157-183 4-30 (180)
445 2q6t_A DNAB replication FORK h 96.4 0.0082 2.8E-07 65.2 9.2 38 459-496 196-237 (444)
446 2pez_A Bifunctional 3'-phospho 96.4 0.0028 9.7E-08 59.4 4.9 37 462-498 4-43 (179)
447 1p9r_A General secretion pathw 96.4 0.0076 2.6E-07 64.6 8.7 69 157-226 166-245 (418)
448 3c8u_A Fructokinase; YP_612366 96.3 0.0039 1.3E-07 60.1 5.9 28 156-183 20-47 (208)
449 1jjv_A Dephospho-COA kinase; P 96.3 0.0019 6.6E-08 62.1 3.7 32 160-194 4-35 (206)
450 3tui_C Methionine import ATP-b 96.3 0.012 4.1E-07 61.5 9.9 30 153-182 49-78 (366)
451 2plr_A DTMP kinase, probable t 96.3 0.0023 7.7E-08 61.7 4.0 27 159-185 5-31 (213)
452 2pze_A Cystic fibrosis transme 96.3 0.013 4.6E-07 57.3 9.7 102 458-574 29-189 (229)
453 3j16_B RLI1P; ribosome recycli 96.3 0.004 1.4E-07 70.0 6.6 26 462-487 102-127 (608)
454 3b60_A Lipid A export ATP-bind 96.3 0.01 3.4E-07 66.9 9.9 28 460-487 366-393 (582)
455 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0019 6.6E-08 67.1 3.7 72 156-227 169-250 (330)
456 3b5x_A Lipid A export ATP-bind 96.3 0.0097 3.3E-07 67.0 9.7 28 460-487 366-393 (582)
457 2wwf_A Thymidilate kinase, put 96.3 0.0013 4.4E-08 63.5 2.1 30 157-186 9-38 (212)
458 1m7g_A Adenylylsulfate kinase; 96.3 0.0029 1E-07 61.1 4.7 41 155-195 22-66 (211)
459 2j41_A Guanylate kinase; GMP, 96.3 0.0022 7.6E-08 61.5 3.8 27 156-182 4-30 (207)
460 4e22_A Cytidylate kinase; P-lo 96.3 0.0028 9.7E-08 63.2 4.7 36 157-194 26-61 (252)
461 1ukz_A Uridylate kinase; trans 96.3 0.003 1E-07 60.5 4.6 31 464-494 16-46 (203)
462 1htw_A HI0065; nucleotide-bind 96.3 0.0026 8.9E-08 58.5 4.0 30 153-182 28-57 (158)
463 2grj_A Dephospho-COA kinase; T 96.3 0.0021 7.2E-08 61.2 3.5 34 159-194 13-46 (192)
464 3b9q_A Chloroplast SRP recepto 96.3 0.0061 2.1E-07 62.4 7.1 53 130-182 70-124 (302)
465 1cke_A CK, MSSA, protein (cyti 96.3 0.0033 1.1E-07 61.3 5.0 30 464-493 6-35 (227)
466 3ake_A Cytidylate kinase; CMP 96.3 0.0028 9.4E-08 60.9 4.3 29 160-188 4-32 (208)
467 3tr0_A Guanylate kinase, GMP k 96.3 0.0027 9.2E-08 60.8 4.2 28 156-183 5-32 (205)
468 2j37_W Signal recognition part 96.2 0.02 6.7E-07 62.8 11.3 36 156-191 99-137 (504)
469 1nn5_A Similar to deoxythymidy 96.2 0.0015 5.2E-08 63.1 2.3 29 157-185 8-36 (215)
470 3tau_A Guanylate kinase, GMP k 96.2 0.0034 1.1E-07 60.6 4.7 28 157-184 7-34 (208)
471 3ozx_A RNAse L inhibitor; ATP 96.2 0.0032 1.1E-07 69.9 5.1 23 465-487 27-49 (538)
472 2yhs_A FTSY, cell division pro 96.2 0.014 4.7E-07 63.3 9.8 53 435-487 265-317 (503)
473 4f4c_A Multidrug resistance pr 96.2 0.007 2.4E-07 74.6 8.5 28 460-487 441-468 (1321)
474 3e70_C DPA, signal recognition 96.2 0.025 8.5E-07 58.5 11.4 27 156-182 127-153 (328)
475 2jaq_A Deoxyguanosine kinase; 96.2 0.0031 1.1E-07 60.2 4.3 29 465-493 2-30 (205)
476 1e4v_A Adenylate kinase; trans 96.2 0.0029 1E-07 61.2 4.1 30 465-494 2-31 (214)
477 3j16_B RLI1P; ribosome recycli 96.2 0.0064 2.2E-07 68.4 7.3 29 155-183 100-128 (608)
478 3nwj_A ATSK2; P loop, shikimat 96.2 0.0026 8.9E-08 63.3 3.7 32 463-494 48-79 (250)
479 2og2_A Putative signal recogni 96.2 0.0074 2.5E-07 63.2 7.3 53 130-182 127-181 (359)
480 4f4c_A Multidrug resistance pr 96.2 0.01 3.5E-07 73.2 9.6 30 154-183 440-469 (1321)
481 2xb4_A Adenylate kinase; ATP-b 96.2 0.0035 1.2E-07 61.2 4.5 29 466-494 3-31 (223)
482 3uie_A Adenylyl-sulfate kinase 96.2 0.0071 2.4E-07 57.8 6.6 39 461-499 23-64 (200)
483 1zu4_A FTSY; GTPase, signal re 96.2 0.026 8.8E-07 58.2 11.2 37 155-191 102-141 (320)
484 1uf9_A TT1252 protein; P-loop, 96.1 0.003 1E-07 60.4 3.8 34 158-194 8-41 (203)
485 3thx_A DNA mismatch repair pro 96.1 0.016 5.4E-07 68.3 10.5 24 157-180 661-684 (934)
486 3thx_A DNA mismatch repair pro 96.1 0.016 5.6E-07 68.1 10.6 22 464-485 663-684 (934)
487 2iw3_A Elongation factor 3A; a 96.1 0.0035 1.2E-07 73.6 4.9 24 462-485 460-483 (986)
488 2pbr_A DTMP kinase, thymidylat 96.1 0.0041 1.4E-07 58.8 4.6 30 466-495 3-35 (195)
489 3llm_A ATP-dependent RNA helic 96.1 0.017 5.9E-07 56.6 9.2 22 463-484 76-97 (235)
490 2v54_A DTMP kinase, thymidylat 96.1 0.0035 1.2E-07 59.9 4.0 33 463-495 4-37 (204)
491 1rz3_A Hypothetical protein rb 96.1 0.012 4.2E-07 56.2 7.9 37 156-192 20-59 (201)
492 1lvg_A Guanylate kinase, GMP k 96.1 0.0031 1.1E-07 60.3 3.6 27 157-183 3-29 (198)
493 1uj2_A Uridine-cytidine kinase 96.1 0.0052 1.8E-07 61.2 5.3 39 158-196 22-68 (252)
494 1z6g_A Guanylate kinase; struc 96.1 0.0033 1.1E-07 61.2 3.7 29 154-182 19-47 (218)
495 2qt1_A Nicotinamide riboside k 96.1 0.0024 8.2E-08 61.5 2.7 37 156-194 19-56 (207)
496 2z0h_A DTMP kinase, thymidylat 96.1 0.0046 1.6E-07 58.7 4.7 31 466-496 3-36 (197)
497 1nks_A Adenylate kinase; therm 96.0 0.0026 8.7E-08 60.2 2.8 24 465-488 3-26 (194)
498 3r20_A Cytidylate kinase; stru 96.0 0.0048 1.6E-07 60.5 4.7 31 463-493 9-39 (233)
499 2if2_A Dephospho-COA kinase; a 96.0 0.004 1.4E-07 59.7 4.1 29 465-494 3-31 (204)
500 1q3t_A Cytidylate kinase; nucl 96.0 0.005 1.7E-07 60.6 4.9 38 155-194 13-50 (236)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-93 Score=819.52 Aligned_cols=550 Identities=45% Similarity=0.783 Sum_probs=452.6
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+||+|++++|++|.+.+..|+.+|++|..+|+.++++||||||||||||+||+++|++++.+|+.++++++.+.
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.|+++..++.+|+.|....|+||||||||.+++.++....+..++++++|+.+|+++.. .++
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~-----------------~~~ 340 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-----------------RAH 340 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG-----------------GGC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc-----------------cCC
Confidence 999999999999999999999999999999999988777677788999999999998643 345
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
|+||||||.++.|||+++|+|||++.|+++.|+.++|.+||+.++++.....+.++..+|..|+||+++||..+|++|..
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~ 420 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccc
Q 045279 358 LAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYL 437 (702)
Q Consensus 358 ~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~ 437 (702)
.++++........ ......+......++.+||..++..++|+..++.....|++.|++++|++++
T Consensus 421 ~A~~r~~~~i~~~---------------~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~ 485 (806)
T 3cf2_A 421 QAIRKKMDLIDLE---------------DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp HHHHHHHHHGGGT---------------CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHH
T ss_pred HHHHhcccccccc---------------ccccchhhhccceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHH
Confidence 9998876543211 1122233445678999999999999999999999889999999999999999
Q ss_pred hhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHH
Q 045279 438 RHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 438 k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
|+.|.+.+.+++++++.|.++|..+++|+|||||||||||++|+++|.+++.+|+.+++++++++|+|++++.++.+|..
T Consensus 486 k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~ 565 (806)
T 3cf2_A 486 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp HHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 518 ARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 518 a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
|+...||||||||+|++++.|+.+ .+...++++++||++||+.....+++||+|||+|+.||+|++||||||++|+|
T Consensus 566 Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC
T ss_pred HHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEE
Confidence 999999999999999999998643 34567899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC--------------CC
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK--------------SS 660 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~--------------~~ 660 (702)
|+|+.++|.+||+.++++.++..+++++.|| ..|+||||+||.++|++|++.|+++...... ..
T Consensus 646 ~lPd~~~R~~il~~~l~~~~~~~~~dl~~la--~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~ 723 (806)
T 3cf2_A 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 723 (806)
T ss_dssp -----CHHHHTTTTTSSCC--CCC------------------CHHHHHHHHHHHHHHHHHC-------------------
T ss_pred CCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccc
Confidence 9999999999999999999999999999999 6789999999999999999999998764321 01
Q ss_pred CCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 661 SDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.....+.|+++||++|+++++||++.+++++|++|.++|+.
T Consensus 724 ~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 724 EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp ----CCC----CCTTTC---------------CCCC-----
T ss_pred cccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 11223579999999999999999999999999999998863
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1e-69 Score=636.39 Aligned_cols=550 Identities=45% Similarity=0.774 Sum_probs=456.5
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|++|+|++.+++.|.+.+..++.+|+++..+++.++.++||+||||||||++|++||+.++.+++.+++.++...
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.|..+..+..+|+.+....|+++||||+|.+...++....+...++...|+..+++... ...
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-----------------~~~ 340 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-----------------RAH 340 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-----------------TSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-----------------ccc
Confidence 999999999999999999999999999999999887666667778888999999886532 345
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGN 357 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~ 357 (702)
+++|+|||.++.+|+++++++||+..+.++.|+.++|.+|++.++....+....++..++..+.||+++++..++..+..
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~ 420 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAAL 420 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999998888878889999999999999999999999887
Q ss_pred HHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccc
Q 045279 358 LAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYL 437 (702)
Q Consensus 358 ~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~ 437 (702)
.+.++....... . .............++.+++..++....|+..+......+.+.|++++|++.+
T Consensus 421 ~a~r~~~~~i~~--~-------------~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~v 485 (806)
T 1ypw_A 421 QAIRKKMDLIDL--E-------------DETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDV 485 (806)
T ss_dssp HHHHHTTTTTSC--H-------------HHHCCHHHHTTCCCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCH
T ss_pred HHHhhhccccch--h-------------hhccchhhhhhhhhhhhhhhccccccCchhhhhhcccCccccccccccchhh
Confidence 776543211000 0 0000112223456788899999998888888777888899999999999999
Q ss_pred hhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHH
Q 045279 438 RHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSR 517 (702)
Q Consensus 438 k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~ 517 (702)
++.+.+.+.+++.++..+.+++..++.++||+||||||||++|+++|..++.+|+.++++++.++|+|+++..++.+|+.
T Consensus 486 k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~ 565 (806)
T 1ypw_A 486 KRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDK 565 (806)
T ss_dssp HHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHH
T ss_pred hhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 518 ARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 518 a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
++...|+||||||+|.+...|+... .....+++++||..|++.....+++||+|||+++.||++++|||||+..|+|
T Consensus 566 a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~ 645 (806)
T 1ypw_A 566 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCC
T ss_pred HHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeec
Confidence 9999999999999999998886543 2366899999999999998888999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC--------------C
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS--------------S 660 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~--------------~ 660 (702)
++|+.++|..||+.++++.++..+.+++.++ ..+.||+|+||+++|++|++.|+++....... .
T Consensus 646 ~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la--~~t~g~sgadi~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (806)
T 1ypw_A 646 PLPDEKSRVAILKANLRKSPVAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVE 723 (806)
T ss_dssp CCCCCSHHHHHTTTTTSCC----CCCCSCSC--GGGSSSCCHHHHHHHHHHHHHHHSCC---------------------
T ss_pred CCCCHHHHHHHHHHHhccCCCCcccCHHHHH--HhccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccc
Confidence 9999999999999999998888889999998 56889999999999999999999876532110 0
Q ss_pred CCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 661 SDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.......|+.+||++|++.++|+++.++++.|++|.+.|+.
T Consensus 724 ~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 724 EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp ---CCTTTTTTSSCCCCCC----------------------
T ss_pred cccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Confidence 11123479999999999999999999999999999988763
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-52 Score=438.40 Aligned_cols=269 Identities=36% Similarity=0.580 Sum_probs=242.3
Q ss_pred CCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 413 PSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 413 p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
|..........|+++|+||+|++++|+.|++.+.+|+++++.|.++|.++|+|+|||||||||||++|+++|++++.+|+
T Consensus 132 ~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~ 211 (405)
T 4b4t_J 132 PLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFI 211 (405)
T ss_dssp CCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred chhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence 33444556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEE
Q 045279 493 HIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVI 569 (702)
Q Consensus 493 ~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI 569 (702)
.++++++.++|+|+++..++.+|..|+...||||||||+|+++++|.... .....+++++||.+||++....+++||
T Consensus 212 ~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vI 291 (405)
T 4b4t_J 212 RVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKII 291 (405)
T ss_dssp EEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEE
T ss_pred EEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999886543 235678999999999999999999999
Q ss_pred EecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHH
Q 045279 570 GATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAA 649 (702)
Q Consensus 570 ~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a 649 (702)
+|||+|+.||||++||||||..|+||+|+.++|.+||+.++++.++..+++++.+| ..|+||||+||+++|++|++.|
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA--~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVA--EKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHH--HHCCSCCHHHHHHHHHHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHH--HHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 6789999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHH
Q 045279 650 LEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKT 694 (702)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~ 694 (702)
+++.. ..|+++||+.|+.++.+...+..+..++.
T Consensus 370 ir~~~-----------~~vt~~Df~~Al~~v~~~~~~~~~s~~k~ 403 (405)
T 4b4t_J 370 LRERR-----------IHVTQEDFELAVGKVMNKNQETAISVAKL 403 (405)
T ss_dssp HHTTC-----------SBCCHHHHHHHHHHHHHHHTCC-------
T ss_pred HHcCC-----------CCcCHHHHHHHHHHHhCccccccchhHhh
Confidence 98743 27999999999998865443333443333
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-50 Score=426.32 Aligned_cols=257 Identities=36% Similarity=0.588 Sum_probs=239.9
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|+++|++|+|++++|+.|.+.+.+++++++.|.++|.++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+.++|+|+++..++.+|..|+...||||||||+|+++++|.... .....+.+++||.+||+.....+++||+|||+|
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrp 331 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKI 331 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCS
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCh
Confidence 99999999999999999999999999999999999999985543 346678999999999999999999999999999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLI 655 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~ 655 (702)
+.||||++||||||..|+|++|+.++|.+||+.++++.++..+++++.+| ..|+||||+||+++|++|++.|+++...
T Consensus 332 d~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA--~~T~GfSGADI~~l~~eA~~~Air~~~~ 409 (437)
T 4b4t_I 332 ETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLV--TTKDDLSGADIQAMCTEAGLLALRERRM 409 (437)
T ss_dssp TTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred hhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999 6799999999999999999999987432
Q ss_pred hcCCCCCCCCccccHHHHHHHHhhcCCCCCHHH
Q 045279 656 SSKSSSDVTPFTIKLTHFEQALSKISPSVSELQ 688 (702)
Q Consensus 656 ~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~ 688 (702)
.|+++||+.|+.++.++.+++.
T Consensus 410 -----------~It~eDf~~Al~rv~~~~~~e~ 431 (437)
T 4b4t_I 410 -----------QVTAEDFKQAKERVMKNKVEEN 431 (437)
T ss_dssp -----------CBCHHHHHHHHHHHHHHHCCCS
T ss_pred -----------ccCHHHHHHHHHHHhCCCChhh
Confidence 7999999999999877655443
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-49 Score=425.72 Aligned_cols=263 Identities=35% Similarity=0.556 Sum_probs=239.7
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
......|+++|++|+|++++|+.|.+.+.+|+++++.|.++|.++|+|+|||||||||||++|+++|++++.+|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
++.++|+|+++..++.+|..|+...||||||||+|+++++|...+ .....+++++||.+||++....+++||+|||+
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNr 329 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNR 329 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESS
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCC
Confidence 999999999999999999999999999999999999999885543 34567889999999999999999999999999
Q ss_pred CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 575 PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 575 ~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
|+.||||++||||||..|+||+|+.++|.+||+.++++.+...+++++.+| ..|+||||+||+++|++|++.|+++..
T Consensus 330 p~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA--~~t~G~sGADi~~l~~eA~~~air~~~ 407 (437)
T 4b4t_L 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAV--KMSDGFNGADIRNCATEAGFFAIRDDR 407 (437)
T ss_dssp TTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHH--HTCCSCCHHHHHHHHHHHHHHHHHTTC
T ss_pred chhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999999999 679999999999999999999998743
Q ss_pred hhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHH
Q 045279 655 ISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYK 693 (702)
Q Consensus 655 ~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~ 693 (702)
. .|+.+||..|+.++.++...+....|+
T Consensus 408 ~-----------~i~~~d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 408 D-----------HINPDDLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp S-----------SBCHHHHHHHHHHHHHTCC--------
T ss_pred C-----------CCCHHHHHHHHHHHHhccCcccchhhh
Confidence 2 799999999999998877665544444
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-49 Score=422.74 Aligned_cols=257 Identities=36% Similarity=0.595 Sum_probs=240.9
Q ss_pred CccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 417 REGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 417 ~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
.......|+++|++|+|++.+|+.|.+.+.+|+.+++.|.++|.++|+|+|||||||||||++|+++|++++.+|+.+++
T Consensus 169 ~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 169 AMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc---hHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 497 PELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG---WVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
+++.++|+|+++..++.+|..|+...||||||||+|+++++|..... ....+++++||.+||++....+++||+|||
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTN 328 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATN 328 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECS
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999865533 356788999999999999889999999999
Q ss_pred CCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 574 RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653 (702)
Q Consensus 574 ~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~ 653 (702)
+|+.||||++||||||..|+||+|+.++|.+||+.++++.++..+++++.+| ..|+||||+||+++|++|++.|+++.
T Consensus 329 rp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA--~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 329 RVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELA--RSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp SCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHH--HHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHH--HhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999 67999999999999999999999875
Q ss_pred HhhcCCCCCCCCccccHHHHHHHHhhcCCCCCH
Q 045279 654 LISSKSSSDVTPFTIKLTHFEQALSKISPSVSE 686 (702)
Q Consensus 654 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~ 686 (702)
.. .|+++||..|+.+++|+.++
T Consensus 407 ~~-----------~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 QS-----------SVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp CS-----------SBCHHHHHHHHHSCSSSCCC
T ss_pred CC-----------CcCHHHHHHHHHHHhCCCCc
Confidence 32 79999999999999998764
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-49 Score=421.61 Aligned_cols=263 Identities=36% Similarity=0.611 Sum_probs=236.9
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
....|+++|+||+|++++|+.|++.+.+++.+++.|.++|+++|+|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc---hHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 500 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG---WVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 500 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
.++|+|+++..++.+|..|+...||||||||+|.++++|..... ....+.++++|.+|++.....+++||+|||+|+
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd 359 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPN 359 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcc
Confidence 99999999999999999999999999999999999999865433 356788999999999999999999999999999
Q ss_pred ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 577 VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 577 ~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
.||+|++||||||+.|+|++|+.++|.+||+.++++.++..+++++.+| ..|+||+|+||+++|++|++.|+++...
T Consensus 360 ~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA--~~T~GfSGADI~~l~~eAa~~Air~~~~- 436 (467)
T 4b4t_H 360 TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELIS--RLCPNSTGAELRSVCTEAGMFAIRARRK- 436 (467)
T ss_dssp SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHHTCS-
T ss_pred cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHcCCC-
Confidence 9999999999999999999999999999999999999999999999999 6799999999999999999999987532
Q ss_pred cCCCCCCCCccccHHHHHHHHhhcCCCCCH-HHHHHHHHH
Q 045279 657 SKSSSDVTPFTIKLTHFEQALSKISPSVSE-LQIQRYKTL 695 (702)
Q Consensus 657 ~~~~~~~~~~~i~~~d~~~al~~~~~~~~~-~~~~~~~~~ 695 (702)
.|+.+||+.|+.++.+...+ .....|.+|
T Consensus 437 ----------~it~~Df~~Al~kV~~g~~k~s~~~~y~~~ 466 (467)
T 4b4t_H 437 ----------VATEKDFLKAVDKVISGYKKFSSTSRYMQY 466 (467)
T ss_dssp ----------SBCHHHHHHHHHHHHHHHCC----------
T ss_pred ----------ccCHHHHHHHHHHHhcCcccchhHHHHHhh
Confidence 79999999999987543221 234455554
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-48 Score=419.55 Aligned_cols=259 Identities=39% Similarity=0.623 Sum_probs=238.9
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|+++|+||+|++.+|+.|.+.+.+++.+++.|.++|.++|+|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+.++|+|+++..++.+|..|+...||||||||+|.+++.|... ......+++++||++|||+....+++||+|||+|
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 9999999999999999999999999999999999999988543 3346688999999999999989999999999999
Q ss_pred CccCccccCCCccceEEEcC-CCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVP-LPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~-~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
+.||||++||||||..|+|| +|+.++|..||+.++++.++..+++++.+| ..|+||||+||+++|++|++.|+++..
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA--~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI--IRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHH--HHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999997 899999999999999999999999999999 678999999999999999999998753
Q ss_pred hhcCCCCCCCCccccHHHHHHHHhh-cCCCCCHHHHH
Q 045279 655 ISSKSSSDVTPFTIKLTHFEQALSK-ISPSVSELQIQ 690 (702)
Q Consensus 655 ~~~~~~~~~~~~~i~~~d~~~al~~-~~~~~~~~~~~ 690 (702)
. .|+++||++|+.+ ++++.+.+.++
T Consensus 400 ~-----------~i~~~d~~~A~~~~~~~~~~~~~~d 425 (428)
T 4b4t_K 400 Y-----------VILQSDLEEAYATQVKTDNTVDKFD 425 (428)
T ss_dssp S-----------SBCHHHHHHHHHHHSCSCCCSSCCC
T ss_pred C-----------CCCHHHHHHHHHHhhCccCCccHhh
Confidence 2 7999999999976 46655544333
No 9
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-44 Score=378.94 Aligned_cols=252 Identities=35% Similarity=0.576 Sum_probs=229.2
Q ss_pred ccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 113 EELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 113 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
......|.++|+||+|++++|++|.+.|.+|+.+|++|..+|+++++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 137 ~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s 216 (405)
T 4b4t_J 137 MMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGA 216 (405)
T ss_dssp CEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhH
Confidence 33445788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++.+.|.|+++..++.+|..|....||||||||||.+++.+... .+....+++.+||..||++..
T Consensus 217 ~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~------------ 284 (405)
T 4b4t_J 217 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET------------ 284 (405)
T ss_dssp GGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC------------
T ss_pred HhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC------------
Confidence 99999999999999999999999999999999999999876432 234557788999999997643
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHH
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLA 349 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~ 349 (702)
..+|+||||||.++.||||++|||||+..|+|+.|+.++|.+||+.++++..+..+.++..+|..|+||+|+||.
T Consensus 285 -----~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~ 359 (405)
T 4b4t_J 285 -----SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVK 359 (405)
T ss_dssp -----CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHH
T ss_pred -----CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHH
Confidence 345999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 350 ALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 350 ~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
++|++|+..++++ ....|+.+||..|+..+.+
T Consensus 360 ~l~~eA~~~Air~--------------------------------~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 360 GVCTEAGMYALRE--------------------------------RRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp HHHHHHHHHHHHT--------------------------------TCSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--------------------------------CCCCcCHHHHHHHHHHHhC
Confidence 9999999888663 1136889999999987654
No 10
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-43 Score=372.27 Aligned_cols=251 Identities=37% Similarity=0.619 Sum_probs=228.0
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|+||+|++++|++|.+.+.+|+.+|++|..+|+++++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELI 253 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGC
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhh
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+.|.|+++..++.+|..|....||||||||+|.++..+.... +....+.+..||..||+...
T Consensus 254 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--------------- 318 (437)
T 4b4t_I 254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--------------- 318 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC---------------
T ss_pred hccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC---------------
Confidence 999999999999999999999999999999999998774432 23456778889999987543
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
.++|+||||||.++.||||++|||||+..|+|+.|+.++|.+||+.++++..+..+.++..+|..|+||+|+||.++|
T Consensus 319 --~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 396 (437)
T 4b4t_I 319 --RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMC 396 (437)
T ss_dssp --SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHH
T ss_pred --CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 355999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
++|+..++++. ...|+.+||..|++.+.++.
T Consensus 397 ~eA~~~Air~~--------------------------------~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 397 TEAGLLALRER--------------------------------RMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp HHHHHHHHHTT--------------------------------CSCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--------------------------------CCccCHHHHHHHHHHHhCCC
Confidence 99998887631 13588999999998776543
No 11
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-42 Score=371.98 Aligned_cols=252 Identities=36% Similarity=0.585 Sum_probs=229.2
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|+||+|++++|++|.+.+.+|+.+|++|..+|+++++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV 252 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH---HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR---EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+.|.|.++..++.+|..|....||||||||+|.++..+..... ....+.+..||..|+++..
T Consensus 253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--------------- 317 (434)
T 4b4t_M 253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--------------- 317 (434)
T ss_dssp SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS---------------
T ss_pred hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC---------------
Confidence 9999999999999999999999999999999999988754332 3445677889999987543
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
.++|+||||||.++.||||++|||||++.|+|+.|+.++|.+||+.++++..+..+.++..+|+.|+||+|+||.++|
T Consensus 318 --~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~ 395 (434)
T 4b4t_M 318 --DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVT 395 (434)
T ss_dssp --SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHH
T ss_pred --CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
++|+..++++- ...|+.+||..++..++|+..
T Consensus 396 ~eA~~~a~r~~--------------------------------~~~i~~~Df~~Al~~v~~~~~ 427 (434)
T 4b4t_M 396 VEAGMIALRNG--------------------------------QSSVKHEDFVEGISEVQARKS 427 (434)
T ss_dssp HHHHHHHHHHT--------------------------------CSSBCHHHHHHHHHSCSSSCC
T ss_pred HHHHHHHHHcC--------------------------------CCCcCHHHHHHHHHHHhCCCC
Confidence 99998887641 135889999999999887643
No 12
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-42 Score=373.04 Aligned_cols=253 Identities=36% Similarity=0.596 Sum_probs=228.7
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+.++|+||+|++++|++|.+.+.+|+.+|++|..+|+++++|||||||||||||++|+++|++++.+|+.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 33478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
.+.|.|+++..++.+|..|....||||||||+|.++..+... .+....+.+..||..|++...
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-------------- 317 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-------------- 317 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--------------
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--------------
Confidence 999999999999999999999999999999999999876432 233456778899999997543
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
.++|+||+|||.++.||||++|||||+..|+|+.|+.++|.+||+.++++.....+.++..+|..|+||+|+||.++
T Consensus 318 ---~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l 394 (437)
T 4b4t_L 318 ---LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNC 394 (437)
T ss_dssp ---TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHH
T ss_pred ---CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
|++|+..++++- ...|+.+||..++..+.+...
T Consensus 395 ~~eA~~~air~~--------------------------------~~~i~~~d~~~Al~~v~~~~k 427 (437)
T 4b4t_L 395 ATEAGFFAIRDD--------------------------------RDHINPDDLMKAVRKVAEVKK 427 (437)
T ss_dssp HHHHHHHHHHTT--------------------------------CSSBCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcC--------------------------------CCCCCHHHHHHHHHHHHhccC
Confidence 999998886531 135889999999988766543
No 13
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-42 Score=366.80 Aligned_cols=248 Identities=35% Similarity=0.574 Sum_probs=225.5
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.+.|.++|+||+|++++|++|.+.|.+|+.+|++|..+|+++++|||||||||||||++|+++|++++.+|+.++++++.
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELV 280 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+.|.|+++..++.+|..|....||||||||+|.++..+... ......+.+..+|..|++...
T Consensus 281 sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--------------- 345 (467)
T 4b4t_H 281 QKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--------------- 345 (467)
T ss_dssp CCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC---------------
T ss_pred cccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC---------------
Confidence 99999999999999999999999999999999999877442 234456777888888886532
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
.++|+||||||+++.||||++|||||++.|+|+.|+.++|.+||+.++++..+..+.++..+|+.|+||+|+||.++|
T Consensus 346 --~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 346 --RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp --TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred --CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
++|+..|+++- ...++.+||..+++.+.
T Consensus 424 ~eAa~~Air~~--------------------------------~~~it~~Df~~Al~kV~ 451 (467)
T 4b4t_H 424 TEAGMFAIRAR--------------------------------RKVATEKDFLKAVDKVI 451 (467)
T ss_dssp HHHHHHHHHHT--------------------------------CSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--------------------------------CCccCHHHHHHHHHHHh
Confidence 99998887641 13578899999987654
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.5e-42 Score=391.72 Aligned_cols=263 Identities=38% Similarity=0.611 Sum_probs=243.3
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|.+.|++|+|++.+++.|++.+..++++++.|.++|..+|+|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 196 ~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~ 275 (806)
T 3cf2_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (806)
T ss_dssp CCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHH
T ss_pred ccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
++|+|+++..++.+|..|+...||||||||+|.++++|+...+....+++++||..|++.....+++||+|||+++.||+
T Consensus 276 sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ 355 (806)
T 3cf2_A 276 SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp SSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCT
T ss_pred cccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCH
Confidence 99999999999999999999999999999999999999888777889999999999999988889999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
+++||||||+.|++++|+.++|.+||+.++++.+...++++..+| ..|.||+|+||.++|++|++.|+++........
T Consensus 356 ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA--~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp TTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHH--HHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999999 679999999999999999999999876533211
Q ss_pred CCC------CCccccHHHHHHHHhhcCCCCC
Q 045279 661 SDV------TPFTIKLTHFEQALSKISPSVS 685 (702)
Q Consensus 661 ~~~------~~~~i~~~d~~~al~~~~~~~~ 685 (702)
... ....|+.+||..|+..+.|+..
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCccc
Confidence 111 2346899999999999988653
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=6.8e-41 Score=350.29 Aligned_cols=282 Identities=45% Similarity=0.830 Sum_probs=251.8
Q ss_pred CccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 417 REGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 417 ~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
++.....|.+.|++++|++.+++.+.+.+.+++.+++.|.+++..++.++||+||||||||++|+++|..++.+|+.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 45556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 497 PELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 497 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
+++.+.|+|+++..++.+|..+....|+||||||+|.+.+.++.. .+....+++++||..|++.....+++||+|||
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn 162 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 162 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEES
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecC
Confidence 999999999999999999999999899999999999999876532 12334678899999999987778999999999
Q ss_pred CCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 574 RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653 (702)
Q Consensus 574 ~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~ 653 (702)
+++.+|++++|||||+..+++++|+.++|.+|++.++++.+...+++++.++ ..+.||+|+||+++|++|++.|+++.
T Consensus 163 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la--~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 163 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA--KMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp CGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHH--HTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887788999999 56899999999999999999999887
Q ss_pred HhhcCCC--------------CCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 654 LISSKSS--------------SDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 654 ~~~~~~~--------------~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
....... .......|+.+||+.|+++++|+++.+++..|+.|.++|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 5321100 0011247999999999999999999999999999999884
No 16
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-41 Score=362.93 Aligned_cols=247 Identities=37% Similarity=0.579 Sum_probs=225.4
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|+||+|++++|++|.+.+..|+.+|+.|..+|+++++|+|||||||||||++|+++|++++.+|+.++++++.
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFV 243 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
+.|.|+++..++.+|..|....|||+||||+|.++..+... .+....+++.+||..|+++..
T Consensus 244 ~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~--------------- 308 (428)
T 4b4t_K 244 HKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ--------------- 308 (428)
T ss_dssp CSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS---------------
T ss_pred ccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC---------------
Confidence 99999999999999999999999999999999999876432 234557889999999998643
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeC-CCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLG-VPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~-~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l 351 (702)
..+|+||||||.++.|||+++|||||+..|+|| +|+.++|..||+.++++..+..+.++..+|..|+||+|+||.++
T Consensus 309 --~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l 386 (428)
T 4b4t_K 309 --STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAI 386 (428)
T ss_dssp --SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHH
T ss_pred --CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHH
Confidence 345999999999999999999999999999996 89999999999999999988888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhcc
Q 045279 352 ANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMV 411 (702)
Q Consensus 352 ~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~ 411 (702)
|++|+..++++. ...|+.+||..|+...
T Consensus 387 ~~eA~~~a~r~~--------------------------------~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 387 MQEAGLRAVRKN--------------------------------RYVILQSDLEEAYATQ 414 (428)
T ss_dssp HHHHHHHHHHTT--------------------------------CSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC--------------------------------CCCCCHHHHHHHHHHh
Confidence 999998887641 1358899999998754
No 17
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=350.14 Aligned_cols=275 Identities=32% Similarity=0.602 Sum_probs=246.1
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-CCeEEEEeccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-GANFIHIKGPELL 500 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-~~~~~~i~~~~l~ 500 (702)
..|+++|++|+|++.+|+.|.+.+.+++++++.|.. +..+++++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 457899999999999999999999999999999874 35678999999999999999999999999 8999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-CCCcEEEEEecCCCCccC
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~atn~~~~ld 579 (702)
++|+|+++..++.+|..++...|+||||||+|.+.+.++........+++++|+..|++.. ...+++||+|||+++.+|
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld 163 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 163 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCC
Confidence 9999999999999999999999999999999999998887767778899999999999975 467899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
++++| ||+..+++++|+.++|..|++.++++.+.. .+.+++.++ ..+.||+|+||.++|++|++.|+++......
T Consensus 164 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la--~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~ 239 (322)
T 1xwi_A 164 SAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELG--RKTDGYSGADISIIVRDALMQPVRKVQSATH 239 (322)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHH--HTCTTCCHHHHHHHHHHHHTHHHHHHHHCSE
T ss_pred HHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999 999999999999999999999999887654 456788888 6789999999999999999999998764210
Q ss_pred -------C-------------------------------CCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 659 -------S-------------------------------SSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 659 -------~-------------------------------~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
. ........|+++||+.|+++++||++.++++.|++|.++|+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319 (322)
T ss_dssp EEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTC
T ss_pred hhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 0 00011247999999999999999999999999999999997
Q ss_pred c
Q 045279 701 A 701 (702)
Q Consensus 701 ~ 701 (702)
+
T Consensus 320 ~ 320 (322)
T 1xwi_A 320 Q 320 (322)
T ss_dssp S
T ss_pred c
Confidence 5
No 18
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=342.31 Aligned_cols=268 Identities=46% Similarity=0.837 Sum_probs=218.6
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..|+++|++++|++++|+.+.+.+.+++.+++.+.++++.++.|++|+||||||||++++++|..++.+++.+++.++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRA 581 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a 581 (702)
.|+|+.+..++.+|..++...|+++|+||+|.+...|+........+++++++.+|++......++++++||+|+.||++
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~a 162 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPA 162 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHh
Confidence 99999999999999999888999999999999887664432233357789999999999888899999999999999999
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhcc---CCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARK---KPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
++||||||..|++++|+.++|.+||+.+++. .+...+++++.+|....|+||+|+||.++|++|++.|+++......
T Consensus 163 l~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~ 242 (274)
T 2x8a_A 163 ILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQK 242 (274)
T ss_dssp HHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC----
T ss_pred hcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999864 3456788999999654567999999999999999999988654322
Q ss_pred CCCCCCCccccHHHHHHHHhhcCCCCCHHHH
Q 045279 659 SSSDVTPFTIKLTHFEQALSKISPSVSELQI 689 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 689 (702)
.........|+++||++|+++++|+++.+++
T Consensus 243 ~~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 243 SGNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -------CCBCHHHHHHHHTTCCCCC-----
T ss_pred ccccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 1122234579999999999999999988654
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2e-39 Score=342.55 Aligned_cols=278 Identities=33% Similarity=0.610 Sum_probs=243.0
Q ss_pred cccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 419 GFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 419 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
.....|++.|++++|++.+++.+.+.+.+++.+++.+.. +..++.++||+||||||||++|+++|++++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 345568899999999999999999999999999998876 5577899999999999999999999999999999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-CCCcEEEEEecCCCCc
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDV 577 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~atn~~~~ 577 (702)
+.+.|+|+++..++.+|..++...|+||||||+|.+.+.++........+++++++..|++.. ...+++||+|||+++.
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ 166 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ 166 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhh
Confidence 999999999999999999999999999999999999988866555566889999999999874 5678999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
||++++| ||+..+++++|+.++|..|++.++++.+.. .+.+++.++ ..+.||+|+||+++|++|++.|+++....
T Consensus 167 ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la--~~t~g~sg~di~~l~~~a~~~a~r~~~~~ 242 (322)
T 3eie_A 167 LDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLG--AMTEGYSGSDIAVVVKDALMQPIRKIQSA 242 (322)
T ss_dssp SCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHH--HTTTTCCHHHHHHHHHHHTTHHHHHHHHC
T ss_pred CCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 999999999999999999999999887654 456788888 67899999999999999999999988653
Q ss_pred cC--------------------------------CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 657 SK--------------------------------SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 657 ~~--------------------------------~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.. .........|+++||.+|++.++|+++.+++..|++|.++|++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 243 THFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp EEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 10 0011123579999999999999999999999999999999985
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=6.3e-39 Score=342.66 Aligned_cols=276 Identities=34% Similarity=0.617 Sum_probs=234.6
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...+.+.|++|+|++.+++.|.+.+.+++.+++.|.. +..++.++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3457889999999999999999999999999999886 567889999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC-CCcEEEEEecCCCCccC
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK-RKGVFVIGATNRPDVMD 579 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~atn~~~~ld 579 (702)
+.|+|.++..++.+|..++...|+||||||+|.+.+.|+........+++++||..|++... ..+++||+|||+++.+|
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 99999999999999999999899999999999999888766667778999999999998753 56899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
++++| ||+..+++++|+.++|..||+.++...+.. .+.+++.|+ ..+.||+|+||+++|++|++.|+++......
T Consensus 202 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la--~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~ 277 (355)
T 2qp9_X 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG--AMTEGYSGSDIAVVVKDALMQPIRKIQSATH 277 (355)
T ss_dssp HHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHH--HHTTTCCHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999 999999999999999999999999887653 456788888 6789999999999999999999998653210
Q ss_pred --------------------------------CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 659 --------------------------------SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 659 --------------------------------~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.......+.|+++||..|++.++|+++.+++..|++|.++|+.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 278 FKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp EEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred hhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 0000123469999999999999999999999999999999974
No 21
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=4.9e-39 Score=378.36 Aligned_cols=446 Identities=19% Similarity=0.267 Sum_probs=312.6
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
-+|++++|.++.++++.+.+ ....++++||+||||||||++|+++++.+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l-------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHH-------------hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 37999999999999998866 23457889999999999999999999987 56788888
Q ss_pred chhhhc--ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 191 ATEVVS--GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 191 ~~~l~~--~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+..+.. .+.|..+..++.+|..+....++||||||+|.+.+.+...... ....+.|...++
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~~~~~~L~~~l~--------------- 312 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLLS--------------- 312 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HHHHHHHSSCSS---------------
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--HHHHHHHHHHHh---------------
Confidence 888774 4778889999999999877778999999999998654331111 111111211111
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc----CCc-ccHHHHHh
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRV----EGS-FDLVKIAR 338 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~----~~~-~~~~~la~ 338 (702)
.+.+.+|++||.++ .+|+++.+ ||. .+.|+.|+.+++.+|+..+...+.. ... ..+..++.
T Consensus 313 ------~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~ 383 (758)
T 1r6b_X 313 ------SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVE 383 (758)
T ss_dssp ------SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred ------CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 24588999998743 68899999 995 7999999999999999987765321 111 12333333
Q ss_pred h-----CCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 339 S-----TPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 339 ~-----t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
. ...+.+..+..++++|+...... +. ......++.+++..++..+..
T Consensus 384 ~s~~~i~~~~lp~~~i~lld~a~~~~~~~------~~----------------------~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 384 LAVKYINDRHLPDKAIDVIDEAGARARLM------PV----------------------SKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHCTTSCTTHHHHHHHHHHHHHHHHS------SS----------------------CCCCCSCCHHHHHHHHHHHSC
T ss_pred HhhhhcccccCchHHHHHHHHHHHHHhcc------cc----------------------cccCCccCHHHHHHHHHHhcC
Confidence 3 23345556666776664322110 00 001235778888888776643
Q ss_pred CCcCcc-------ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEcCCCCChhHHHHH
Q 045279 414 SSRREG-------FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 414 ~~~~~~-------~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~Gp~GtGKT~la~~ 482 (702)
...... ...+.......+.|++.++..+...+... +.|. .+..++||+||||||||++|++
T Consensus 436 ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~--------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~ 507 (758)
T 1r6b_X 436 IPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQ 507 (758)
T ss_dssp CCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH--------HTTCSCTTSCSEEEEEECSTTSSHHHHHHH
T ss_pred CCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCCCcHHHHHHH
Confidence 211100 00011112345778887777776655432 2333 2345799999999999999999
Q ss_pred HHHHhCCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHH
Q 045279 483 VANEAGANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLL 550 (702)
Q Consensus 483 la~~~~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~ 550 (702)
+|+.++.+|+.++++++... |+|..+.. .+...++..+++||||||++.+. .+++
T Consensus 508 la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~--~l~~~~~~~~~~vl~lDEi~~~~-----------~~~~ 574 (758)
T 1r6b_X 508 LSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGG--LLTDAVIKHPHAVLLLDEIEKAH-----------PDVF 574 (758)
T ss_dssp HHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTT--HHHHHHHHCSSEEEEEETGGGSC-----------HHHH
T ss_pred HHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccc--hHHHHHHhCCCcEEEEeCccccC-----------HHHH
Confidence 99999999999999988653 44433322 34555666688999999999998 7899
Q ss_pred HHHHHhhhCCC---------CCCcEEEEEecCCCC-------------------------ccCccccCCCccceEEEcCC
Q 045279 551 NQLLIELDGAD---------KRKGVFVIGATNRPD-------------------------VMDRAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 551 ~~ll~~l~~~~---------~~~~~~vI~atn~~~-------------------------~ld~a~~r~gRf~~~i~~~~ 596 (702)
+.|++.|+... ...+++||+|||... .++|+|++ ||+.+|.|++
T Consensus 575 ~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~ 652 (758)
T 1r6b_X 575 NILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDH 652 (758)
T ss_dssp HHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCC
T ss_pred HHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCC
Confidence 99999998531 125789999999854 67888888 9999999999
Q ss_pred CCHHHHHHHHHHHhccC-------C--CC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 597 PTPDERGLILEALARKK-------P--ID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 597 p~~~~r~~il~~~~~~~-------~--~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
|+.+++..|++.++.+. . +. .+..++.++...+..+++.++|+++++.++..++.+.+..
T Consensus 653 l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~ 722 (758)
T 1r6b_X 653 LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLF 722 (758)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999887632 1 11 2234566776556667889999999999998877776554
No 22
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=4e-38 Score=369.93 Aligned_cols=461 Identities=17% Similarity=0.246 Sum_probs=300.6
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
-++++|+|.++.++++.+.+ .....+++||+||||||||++|+++|+.+ +.+++.++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l-------------~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~ 243 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVL-------------SRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHH-------------HCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCchHHHHHHHHHH-------------hCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEec
Confidence 37999999999999998876 22456789999999999999999999997 78888888
Q ss_pred chhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
+ ...+.|+++..++.+|..+....|+||||| .. ....+.|+..++
T Consensus 244 ~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~---------~~~~~~L~~~l~----------------- 288 (758)
T 3pxi_A 244 M---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA---------IDASNILKPSLA----------------- 288 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT-----------------
T ss_pred c---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc---------hhHHHHHHHHHh-----------------
Confidence 7 455788888899999999998889999999 00 011122222222
Q ss_pred CCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-----HHHHHhh-
Q 045279 271 SDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-----LVKIARS- 339 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-----~~~la~~- 339 (702)
.+.+++|++||..+ .+|++++| || ..|.|+.|+.+++.+||+.+...+...+... +..++..
T Consensus 289 ----~~~v~~I~at~~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s 361 (758)
T 3pxi_A 289 ----RGELQCIGATTLDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLS 361 (758)
T ss_dssp ----SSSCEEEEECCTTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHH
T ss_pred ----cCCEEEEeCCChHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 34589999999988 79999999 99 6799999999999999998887754333222 2333322
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHHH-------------HHhhhhcc----ccCccccc-----------cCcccccC
Q 045279 340 ----TPGFVGADLAALANKAGNLAMKRI-------------IDQRKSEL----SGNSIAEQ-----------HSDDWWRQ 387 (702)
Q Consensus 340 ----t~g~~~~dl~~l~~~a~~~a~~r~-------------~~~~~~~~----~~~~~~~~-----------~~~~~~~~ 387 (702)
+.++.+.....+++.|+..+..+. +....... ........ ........
T Consensus 362 ~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 441 (758)
T 3pxi_A 362 DRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKK 441 (758)
T ss_dssp HHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777755432110 00000000 00000000 00000000
Q ss_pred CCChh-hhhhhcccHhHHHHHHhccCCCCcC-------ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcC
Q 045279 388 PWLPE-EMERLTITMTDFEEATKMVQPSSRR-------EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFG 459 (702)
Q Consensus 388 ~~~~~-~~~~~~i~~~d~~~~l~~~~p~~~~-------~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~ 459 (702)
.|... ......++.+++...+..+...... .............++|++.+++.+...+....... ...
T Consensus 442 ~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~----~~~ 517 (758)
T 3pxi_A 442 SWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL----KDP 517 (758)
T ss_dssp GGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC----SCT
T ss_pred HHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc----CCC
Confidence 01000 0122456677777777665432111 01111112234568899998888877765542110 001
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
..+..++||+||||||||++|+++|..+ +.+|+.++++++...+... ...++..++..+++||||||++.+.
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~- 592 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH- 592 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC-
Confidence 1223379999999999999999999987 7899999999999887655 2234455566688999999999998
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCCCc------------cCccccCCCccceEEEcC
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRPDV------------MDRAVLRPGRFGKLLYVP 595 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~~~------------ld~a~~r~gRf~~~i~~~ 595 (702)
..+++.|++.|+... ...+++||+|||.+.. +.|++++ ||+.+|.|+
T Consensus 593 ----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~ 660 (758)
T 3pxi_A 593 ----------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFH 660 (758)
T ss_dssp ----------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC
T ss_pred ----------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecC
Confidence 889999999998632 3457899999997543 7888888 999999999
Q ss_pred CCCHHHHHHHHHHHhccC-------CCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 596 LPTPDERGLILEALARKK-------PID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 596 ~p~~~~r~~il~~~~~~~-------~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|+.+++..|++.++... ... .+..++.++...+...++.++|+++|++++..++.+.+...
T Consensus 661 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~l~~ 732 (758)
T 3pxi_A 661 SLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRG 732 (758)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999998876542 111 12235566654455567889999999999998888776543
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=5.4e-38 Score=345.12 Aligned_cols=277 Identities=32% Similarity=0.579 Sum_probs=236.4
Q ss_pred ccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-CCeEEEEeccc
Q 045279 420 FSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-GANFIHIKGPE 498 (702)
Q Consensus 420 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-~~~~~~i~~~~ 498 (702)
....|.+.|++|+|++.+++.|.+.+.+++.++..|.. +..++.++||+||||||||++|+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34567899999999999999999999999999988774 34677999999999999999999999999 89999999999
Q ss_pred ccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-CCCcEEEEEecCCCCc
Q 045279 499 LLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDV 577 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~atn~~~~ 577 (702)
+.+.|+|.++..++.+|..++...|+||||||+|.+.+.++........+++++||..|++.. ...+++||+|||+++.
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ 283 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV 283 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence 999999999999999999999999999999999999988877766777899999999999875 3678999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
+|++++| ||+..+++++|+.++|..||+.++...+.. .+.+++.++ ..+.||+|+||.++|++|++.|+++....
T Consensus 284 ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la--~~t~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 284 LDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELG--RKTDGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp SCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHH--HHTTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred cCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 999999999999999999999999877653 456788888 67899999999999999999999987642
Q ss_pred c-------CC-------------------------------CCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 045279 657 S-------KS-------------------------------SSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSET 698 (702)
Q Consensus 657 ~-------~~-------------------------------~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~ 698 (702)
. .. ......+.|+++||..|+++++||++.+++..|+.|.++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~ 439 (444)
T 2zan_A 360 THFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTED 439 (444)
T ss_dssp SEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSS
T ss_pred hhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 1 00 000123579999999999999999999999999999999
Q ss_pred Hhc
Q 045279 699 FKA 701 (702)
Q Consensus 699 ~~~ 701 (702)
|++
T Consensus 440 ~~~ 442 (444)
T 2zan_A 440 FGQ 442 (444)
T ss_dssp CTT
T ss_pred HcC
Confidence 875
No 24
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=1.7e-37 Score=368.38 Aligned_cols=474 Identities=21% Similarity=0.289 Sum_probs=299.7
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
.+|++++|.++.++++.+.+. ....++++|+||||||||++|+++|+.+ +.+++.++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 233 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 233 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred CCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee
Confidence 379999999999999987662 2345789999999999999999999997 78899999
Q ss_pred chhhhc--ccccccHHHHHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 191 ATEVVS--GVSGASEENIRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 191 ~~~l~~--~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
++.+.. .+.|..+..+..+|..+... .|+||||||+|.+.+....... ....+.|...++
T Consensus 234 ~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l~-------------- 296 (854)
T 1qvr_A 234 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA-------------- 296 (854)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH--------------
T ss_pred hHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHHh--------------
Confidence 999874 47788889999999998765 6889999999999865433211 222233444443
Q ss_pred CCCCCCCCCeEEEEEecCCCC----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-----cHHHHHh
Q 045279 268 SDASDSKPGYVLVIGATNRPD----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-----DLVKIAR 338 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-----~~~~la~ 338 (702)
.+.+.+|++||.++ .+++++.+ ||+. +.++.|+.+++.+|++.++..+...+.. .+..++.
T Consensus 297 -------~~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ 366 (854)
T 1qvr_A 297 -------RGELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAAT 366 (854)
T ss_dssp -------TTCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred -------CCCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHH
Confidence 23478999998864 58999999 9965 9999999999999998877654322221 2333333
Q ss_pred -----hCCCCCHHHHHHHHHHHHHHHHHH-------------HHHhhh---hccccCc--ccccc---------------
Q 045279 339 -----STPGFVGADLAALANKAGNLAMKR-------------IIDQRK---SELSGNS--IAEQH--------------- 380 (702)
Q Consensus 339 -----~t~g~~~~dl~~l~~~a~~~a~~r-------------~~~~~~---~~~~~~~--~~~~~--------------- 380 (702)
.+..|.+.....++++|+...... .+.+.. .....+. .....
T Consensus 367 ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (854)
T 1qvr_A 367 LSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEI 446 (854)
T ss_dssp HHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHH
T ss_pred HHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 345677888888888776543211 000000 0000000 00000
Q ss_pred ---Cccccc--------------------------CCCC---------------------------hhhhhhhcccHhHH
Q 045279 381 ---SDDWWR--------------------------QPWL---------------------------PEEMERLTITMTDF 404 (702)
Q Consensus 381 ---~~~~~~--------------------------~~~~---------------------------~~~~~~~~i~~~d~ 404 (702)
...|.. ..+. ....-..+++.+++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l 526 (854)
T 1qvr_A 447 AKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDI 526 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHH
Confidence 000000 0000 00001234666777
Q ss_pred HHHHhccCCCCcC-------ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCC----CCCcceEEEcCCC
Q 045279 405 EEATKMVQPSSRR-------EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV----DLETGFLLYGPPG 473 (702)
Q Consensus 405 ~~~l~~~~p~~~~-------~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~~~ll~Gp~G 473 (702)
...+..+...... ......+...+..++|.+.+++.+...+... +.|. .+..++||+||||
T Consensus 527 ~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--------~~g~~~~~~p~~~vLl~Gp~G 598 (854)
T 1qvr_A 527 AEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--------RAGLKDPNRPIGSFLFLGPTG 598 (854)
T ss_dssp HHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--------GGGCSCSSSCSEEEEEBSCSS
T ss_pred HHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--------hcccCCCCCCceEEEEECCCC
Confidence 7766655431100 0011112223567889888888887766543 1221 2335799999999
Q ss_pred CChhHHHHHHHHHh---CCeEEEEeccccccc------------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 474 CGKTLIAKAVANEA---GANFIHIKGPELLNK------------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 474 tGKT~la~~la~~~---~~~~~~i~~~~l~~~------------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
||||++|+++|..+ +.+|+.++++++... |+|... ...+...++..+++||||||++.+.
T Consensus 599 tGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~--- 673 (854)
T 1qvr_A 599 VGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAH--- 673 (854)
T ss_dssp SSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGSC---
T ss_pred CCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccC---
Confidence 99999999999998 789999999887653 334332 1244555566678999999999988
Q ss_pred CCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC--------------------------CccCcccc
Q 045279 539 GKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP--------------------------DVMDRAVL 583 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~--------------------------~~ld~a~~ 583 (702)
..+++.|++.|+... ...+++||+|||.. ..+.|+|+
T Consensus 674 --------~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~ 745 (854)
T 1qvr_A 674 --------PDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFL 745 (854)
T ss_dssp --------HHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHH
T ss_pred --------HHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHH
Confidence 889999999998532 23478999999972 24667777
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHHHhccC-------CC--C-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEALARKK-------PI--D-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDK 653 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~~~~~~-------~~--~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~ 653 (702)
+ ||+.++.|++|+.+++..|++.++.+. .. . .+..++.++...+...++.++|+++|+.++..++.+.
T Consensus 746 ~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~ 823 (854)
T 1qvr_A 746 N--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 823 (854)
T ss_dssp H--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred H--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 7 999999999999999999998887631 11 1 1223455664333335677999999999999888887
Q ss_pred Hhhc
Q 045279 654 LISS 657 (702)
Q Consensus 654 ~~~~ 657 (702)
+...
T Consensus 824 i~~~ 827 (854)
T 1qvr_A 824 ILAG 827 (854)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 6543
No 25
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.4e-35 Score=327.53 Aligned_cols=286 Identities=46% Similarity=0.744 Sum_probs=239.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
..+|++|+|++.++++|.+.+..++.+|+++..+|..++.++||+||||||||++|+++++.++.+|+.++|+++.+.+.
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
|.....++.+|..+....|++|||||||.+.+.++....+...+++..|+..|++... +.+++
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~-----------------~~~v~ 342 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-----------------RAHVI 342 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT-----------------TSCEE
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc-----------------CCceE
Confidence 9999999999999999999999999999999887766667788899999999996532 45699
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
||+|||.++.++++++++|||+..+.++.|+.++|.+||+.+++........++..++..+.||+++||..+|+.|...+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a 422 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQA 422 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888888888999999999999999999999999888
Q ss_pred HHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccc
Q 045279 360 MKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYL 437 (702)
Q Consensus 360 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~ 437 (702)
.++...... ...............++.+||..++..+.|+..++.....|+++|+||||....
T Consensus 423 ~r~~~~~i~---------------~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 423 IRKKMDLID---------------LEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp HHTTTTTCC---------------TTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred HHhcccccc---------------ccccccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCccc
Confidence 765332110 000111223345578999999999999999999999999999999999997653
No 26
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=7.5e-35 Score=318.65 Aligned_cols=246 Identities=41% Similarity=0.700 Sum_probs=220.1
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
.+.++|++++|++.+++.+.+.+.. +..+..+.+++...+.|++|+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3567899999999999999987654 778899999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
|+|.++..++.+|..|+...|+||||||+|.+..+|+.. ......+++++||..|+++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999999999999999999999999999999999887642 23345688999999999887778899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
++++|||||+..|.+++|+.++|.+|++.++++.++..++++..++ ..+.||+|+||.++|++|+..|.++..
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la--~~t~G~sgadL~~lv~~Aal~A~~~~~----- 241 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIA--KRTPGFVGADLENLVNEAALLAAREGR----- 241 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHH--HhcCCCcHHHHHHHHHHHHHHHHHcCC-----
Confidence 9999999999999999999999999999999998888888899998 678999999999999999988876532
Q ss_pred CCCCCCccccHHHHHHHHhhcCC
Q 045279 660 SSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
..|+.+||..|+.++.+
T Consensus 242 ------~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 242 ------DKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ------SSBCHHHHHHHHHHHC-
T ss_pred ------CeecHHHHHHHHHHHhc
Confidence 27999999999998854
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.2e-34 Score=296.82 Aligned_cols=267 Identities=41% Similarity=0.660 Sum_probs=227.9
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..|...|++++|++.+++.+.+.+..++.+++.+.+++..++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
.|.|.....++.+|..+....|+||||||+|.+.+++.... .....+.+..++..+++.....+++||+|||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999999998776542 234567788888888888777899999999999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
|+++++++||+..+.++.|+.++|.+|++.+++......+.++..++ ..+.||+++||+++|+.|...|+.+...
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~--~~~~g~~~~~i~~l~~~a~~~a~~~~~~--- 244 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA--KMTEGCVGAELKAICTEAGMNAIRELRD--- 244 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HHCTTCCHHHHHHHHHHHHHHHHHTTCS---
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhccC---
Confidence 99999999999999999999999999999999988888888999999 6789999999999999999999887532
Q ss_pred CCCCCCCccccHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhc
Q 045279 659 SSSDVTPFTIKLTHFEQALSKISP--SVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al~~~~~--~~~~~~~~~~~~~~~~~~~ 701 (702)
.|+.+||.+|+..+.+ ......-.+|..|+.+|+.
T Consensus 245 --------~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 245 --------YVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp --------SBCHHHHHHHHHHHHHHHCCC----------------
T ss_pred --------cCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 7999999999997743 2333446788999988763
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-34 Score=301.49 Aligned_cols=276 Identities=34% Similarity=0.576 Sum_probs=228.5
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...+++.|++++|++.+++.+.+.+..+..+++.+..++ .++.+++|+||||||||++|+++|..++.+|+.++++++.
T Consensus 13 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 91 (297)
T 3b9p_A 13 EGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLT 91 (297)
T ss_dssp CCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTS
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHh
Confidence 345678999999999999999999999999988887665 5678999999999999999999999999999999999999
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCC---CcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR---KGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~---~~~~vI~atn~~~~ 577 (702)
+.|+|.++..++.+|..+....|+||||||+|.+...++........++++.|+..+++.... .+++||++||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 92 SKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred hcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 999999999999999999998999999999999998876554445578889999999986543 57999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
+++++++ ||+..+++++|+.++|..|++.+++..+.. .+.+++.++ ..+.||+|+||+++|++|+..++++....
T Consensus 172 l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la--~~~~g~~~~~l~~l~~~a~~~a~r~~~~~ 247 (297)
T 3b9p_A 172 LDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLA--KITDGYSGSDLTALAKDAALEPIRELNVE 247 (297)
T ss_dssp BCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHH--HHTTTCCHHHHHHHHHHHTTHHHHTCC--
T ss_pred CCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999 999999999999999999999998876543 234567777 56899999999999999999998874321
Q ss_pred cC-CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 657 SK-SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 657 ~~-~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.. .........|+.+||..|+..++|+++.+++..|+.|.+.|+.
T Consensus 248 ~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 248 QVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp ------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred hcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 11 1111223479999999999999999999999999999999875
No 29
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=4.8e-34 Score=315.21 Aligned_cols=260 Identities=38% Similarity=0.613 Sum_probs=236.9
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
+.+.|++++|++..++.+.+.+..++.+++.|.++|..++.++||+||||||||++|+++|..++.+|+.++++++.+.|
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcccc
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVL 583 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~ 583 (702)
+|+.+..++.+|..|....|++|||||+|.+.++++...+....++++.|+..|++.....+++||+|||+++.+|+++.
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~ 358 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALR 358 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHh
Confidence 99999999999999999999999999999999998877777788999999999999888889999999999999999999
Q ss_pred CCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 045279 584 RPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDV 663 (702)
Q Consensus 584 r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~ 663 (702)
++|||+..++|++|+.++|.+||+.+++...+..+.++..++ ..+.||+++||.++|++|++.|+++...........
T Consensus 359 r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la--~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~ 436 (489)
T 3hu3_A 359 RFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET 436 (489)
T ss_dssp STTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSS
T ss_pred CCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHH--HHccCCcHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999999999999999999999998888888999999 678999999999999999999998865422111111
Q ss_pred ------CCccccHHHHHHHHhhcCCCCC
Q 045279 664 ------TPFTIKLTHFEQALSKISPSVS 685 (702)
Q Consensus 664 ------~~~~i~~~d~~~al~~~~~~~~ 685 (702)
....|+++||+.|++.++|+..
T Consensus 437 ~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 437 IDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp CCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred cchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 1236999999999999987643
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=308.73 Aligned_cols=275 Identities=33% Similarity=0.594 Sum_probs=232.8
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..+.+.|++++|++.+++.+.+.+.+++.++..+.+.+ .++.++||+||||||||++|+++|..++.+|+.++++++.+
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34678999999999999999999999999888877654 66789999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--CCCcEEEEEecCCCCccC
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--KRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--~~~~~~vI~atn~~~~ld 579 (702)
.|+|..+..++.+|..+....|+||||||+|.+.+.++........++++++|..+++.. ...+++||+|||.++.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 999999999999999999889999999999999988766656667899999999999864 346899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
+++++ ||+..+++++|+.++|..|++.+++..... .+.+++.++ ..+.||+|+||+++|++|+..++++......
T Consensus 236 ~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la--~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~ 311 (357)
T 3d8b_A 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIV--QQSDAFSGADMTQLCREASLGPIRSLQTADI 311 (357)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHH--HHTTTCCHHHHHHHHHHHHTHHHHHCCC---
T ss_pred HHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999 999999999999999999999998876543 345677788 5689999999999999999999886431110
Q ss_pred -CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 659 -SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 659 -~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.........|+.+||..|+++++|+++.++++.|+.|.+.|++
T Consensus 312 ~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 312 ATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp -------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred ccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 0111223579999999999999999999999999999999985
No 31
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=294.63 Aligned_cols=262 Identities=37% Similarity=0.644 Sum_probs=208.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+||+|++++|++|.+.+..|+.+++.+..+++..+.+++|+||||||||||+++||+.++..++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.+..+..+..+|+.+....|+++|+||+|.+...+.........++.+.++..|++... ...
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~-----------------~~~ 146 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA-----------------RQQ 146 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS-----------------TTC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc-----------------cCC
Confidence 888888899999999988899999999999987654332222234567788888886432 234
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC---cccCCcccHHHHHhhCC--CCCHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN---LRVEGSFDLVKIARSTP--GFVGADLAALA 352 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~---~~~~~~~~~~~la~~t~--g~~~~dl~~l~ 352 (702)
++++++||.|+.+|++++|||||+..|+++.|+.++|.+||+.+++. .....+.++..++..+. ||+|+||..+|
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~ 226 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALV 226 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHH
Confidence 89999999999999999999999999999999999999999998864 33455778999998754 99999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRR 417 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~ 417 (702)
++|+..++++.+..... ........|+.+||..++..++|+...
T Consensus 227 ~~a~~~a~~~~~~~~~~---------------------~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 227 REASICALRQEMARQKS---------------------GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp HHHHHHHHHHHC--------------------------------CCBCHHHHHHHHTTCCCCC--
T ss_pred HHHHHHHHHHHHhhccc---------------------cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 99999988775432110 001123579999999999999887543
No 32
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=3.5e-33 Score=285.35 Aligned_cols=246 Identities=39% Similarity=0.663 Sum_probs=216.2
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
.+...|++++|++.+++.+.+.+.+ +.++..+.+++...+.+++|+||||||||++|+++|+.++.+++.++++++.+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4577899999999999999886654 778888888898999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
+.|.++..++.+|..+....|+++||||+|.+...++.. ......+.++.++..+++.....+++||++||.++.+|
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 999999999999999998889999999999999877543 22344578999999999988788899999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
++++||+||+..+++++|+.++|.+|++.+++..++..+.++..++ ..+.||+++||.++|++|+..|..+..
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a~~~~~----- 237 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNK----- 237 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 9999999999999999999999999999999988888888888888 568899999999999999998887542
Q ss_pred CCCCCCccccHHHHHHHHhhcCC
Q 045279 660 SSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
..|+.+||.+|+..+..
T Consensus 238 ------~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 238 ------RVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp ------SSBCHHHHHHHHHHHTT
T ss_pred ------CcccHHHHHHHHHHHhc
Confidence 27999999999998754
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=296.63 Aligned_cols=231 Identities=34% Similarity=0.582 Sum_probs=207.5
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEechhhh
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-GVPFYKISATEVV 195 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~i~~~~l~ 195 (702)
..+.++|+||+|++.+|+.|.+.+.+|+.+|+++.. +..+++++||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 456779999999999999999999999999998874 35677999999999999999999999999 8899999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
..+.|..+..++.+|..+....|+||||||+|.+.+.++........++.+.++..+++... ..
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~----------------~~ 147 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV----------------DN 147 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS----------------CC
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc----------------cC
Confidence 99999999999999999999999999999999999877666666778889999999986532 23
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
.+++||+|||.++.+|++++| ||+..+.++.|+.++|.+|++.+++..... ...++..+++.+.||+++||..+|++
T Consensus 148 ~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 459999999999999999999 999999999999999999999998877654 45678899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 045279 355 AGNLAMKRIIDQ 366 (702)
Q Consensus 355 a~~~a~~r~~~~ 366 (702)
|...++++....
T Consensus 226 A~~~a~r~~~~~ 237 (322)
T 1xwi_A 226 ALMQPVRKVQSA 237 (322)
T ss_dssp HHTHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999987653
No 34
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=2.5e-33 Score=292.96 Aligned_cols=276 Identities=38% Similarity=0.586 Sum_probs=225.1
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|++|+|++.+++.|.+.+..|+.+|+.+..+++.++.++||+||||||||++|+++|+.++.+++.++++++.
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~ 86 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 86 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..+.|..+..+..+|..+....|+||||||+|.+...++... .....+++..|+..+++...
T Consensus 87 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--------------- 151 (301)
T 3cf0_A 87 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--------------- 151 (301)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT---------------
T ss_pred hhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC---------------
Confidence 999999999999999999999999999999999987654321 12234567788888885421
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
..+++||+|||.++.+|++++|+|||+..++++.|+.++|.+|++.+++........++..++..+.||+|+||.++|
T Consensus 152 --~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~ 229 (301)
T 3cf0_A 152 --KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEIC 229 (301)
T ss_dssp --TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHH
T ss_pred --CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHH
Confidence 345999999999999999999999999999999999999999999999888777778899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 353 NKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 353 ~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
++|+..+.++.+........... .. .. ............++.+||..+++.+.|+.
T Consensus 230 ~~a~~~a~~~~~~~~~~~~~~~~---~~-~~---~~~~~~~~~~~~v~~~~~~~al~~~~~s~ 285 (301)
T 3cf0_A 230 QRACKLAIRESIESEIRRERERQ---TN-PS---AMEVEEDDPVPEIRRDHFEEAMRFARRSV 285 (301)
T ss_dssp HHHHHHHHHHHHHHHC---------------------------CCCBCHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHhhhhhhhhcc---cc-cc---cccccccccCCccCHHHHHHHHHHcCCCC
Confidence 99999998887644221100000 00 00 00000001124689999999999887754
No 35
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=5.8e-33 Score=300.98 Aligned_cols=279 Identities=36% Similarity=0.569 Sum_probs=227.1
Q ss_pred ccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 418 EGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 418 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
......+.+.|++++|++.+++.+.+.+..+..+++.+.+.+ .++.++||+||||||||++|+++|..++.+|+.++++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~ 182 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAA 182 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHH
Confidence 334455778999999999999999999999999888887766 4578999999999999999999999999999999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC--CCcEEEEEecCCC
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK--RKGVFVIGATNRP 575 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~atn~~ 575 (702)
++.+.|+|..+..++.+|..+....|+||||||+|.+...+.........++++.|+..|++... ..+++||+|||++
T Consensus 183 ~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 183 SLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRP 262 (389)
T ss_dssp CC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCG
T ss_pred HhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999999887666566678999999999998654 5679999999999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC-CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID-DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKL 654 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~ 654 (702)
+.+++++++ ||+..++|++|+.++|..||+.++...... .+.++..++ ..+.||++++|..+|+.|+..++++..
T Consensus 263 ~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la--~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 263 QELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLA--RMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp GGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHH--HHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred hhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 999999999 999999999999999999999998876543 234567777 568899999999999999999988743
Q ss_pred hhcC-CCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhc
Q 045279 655 ISSK-SSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKA 701 (702)
Q Consensus 655 ~~~~-~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 701 (702)
.... .........|+.+||..|+..+.|+++.+.++.|+.|.+.|++
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 2111 1112233579999999999999999999999999999999975
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=5.3e-33 Score=293.41 Aligned_cols=281 Identities=33% Similarity=0.519 Sum_probs=225.8
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+.++|++|+|++.+|+.|.+.+..|+.+|+++.. +..++.++||+||||||||++|+++|++++.+|+.++++++
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l 87 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 87 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHH
Confidence 44567789999999999999999999999999988876 56678999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
...+.|..+..+..+|..+....|+||||||||.+...+.........++...++..+++... .
T Consensus 88 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------------~ 151 (322)
T 3eie_A 88 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN----------------D 151 (322)
T ss_dssp HTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT----------------S
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc----------------c
Confidence 999999999999999999999999999999999999877655555667888899999987542 2
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
..+++||+|||.++.+|++++| ||+..++++.|+.++|.+|++.++...... ...++..++..+.||+++||..+|+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 152 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999 999999999999999999999998877644 4557889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccC-------------CCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQ-------------PWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
.|...++++..............+. ...+... ....+......|+.+||..+++.++|+..
T Consensus 230 ~a~~~a~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 303 (322)
T 3eie_A 230 DALMQPIRKIQSATHFKDVSTEDDE--TRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303 (322)
T ss_dssp HHTTHHHHHHHHCEEEEECC----C--CCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHhhhhhhhhhcccccc--ccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCC
Confidence 9999999987654221111000000 0000000 00111222357999999999999888653
No 37
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-32 Score=302.56 Aligned_cols=246 Identities=40% Similarity=0.676 Sum_probs=220.9
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
+.++|++++|++.++..+.+.+. .+..+..+.+++...+.|++|+||||||||++|+++|..++.+|+.++++++...|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 67899999999999999998654 46788889999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCc
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDR 580 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~ 580 (702)
+|.....++.+|+.+....|+|+||||+|.+...++.. ......+.++++|.+|++......+++|++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999987789999999999998777532 234556889999999999887788999999999999999
Q ss_pred cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 581 AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 581 a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
+++|||||+..|.+++|+.++|.+||+.++++.++..++++..++ ..+.||+|+||+++|++|+..|.++..
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA--~~t~G~~gadL~~lv~~Aa~~A~~~~~------ 256 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGR------ 256 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHH--TTSCSCCHHHHHHHHHHHHHHHTTTCC------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 999999999999999999999999999999888888888999999 678999999999999999987765421
Q ss_pred CCCCCccccHHHHHHHHhhcCCC
Q 045279 661 SDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
..|+.+||..|+.++.+.
T Consensus 257 -----~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 257 -----RKITMKDLEEAADRVMML 274 (499)
T ss_dssp -----SSCCSHHHHHHHHHHTTC
T ss_pred -----CccCHHHHHHHHHHHhcc
Confidence 269999999999988653
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.6e-32 Score=292.98 Aligned_cols=283 Identities=33% Similarity=0.519 Sum_probs=218.4
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+..+|++|+|++.+++.|.+.+..|+.+|+++.. +..++.++||+||||||||++|+++|+.++.+|+.++++++
T Consensus 42 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l 120 (355)
T 2qp9_X 42 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 120 (355)
T ss_dssp -----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHH
Confidence 33456779999999999999999999999999998876 56788999999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
...+.|..+..+..+|..+....|+||||||+|.+...+.........++...|+..|++... .
T Consensus 121 ~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~----------------~ 184 (355)
T 2qp9_X 121 VSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN----------------D 184 (355)
T ss_dssp HSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC------------------
T ss_pred hhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc----------------c
Confidence 999999999999999999998899999999999999876655566778888999999986532 2
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
+.+++||+|||.++.++++++| ||+..++++.|+.++|.+||+.++...... ...++..+++.+.||+++||..+|+
T Consensus 185 ~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 185 SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp -CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999 999999999999999999999998877643 4557889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccc-----cccC---cccccCC---CChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIA-----EQHS---DDWWRQP---WLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~-----~~~~---~~~~~~~---~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
+|+..++++............... ..+. ....... ..........|+.+||..++..++|+..
T Consensus 263 ~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~ 336 (355)
T 2qp9_X 263 DALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 336 (355)
T ss_dssp HHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCC
Confidence 999999988764321000000000 0000 0000000 1112223457999999999999988653
No 39
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=7.8e-33 Score=283.46 Aligned_cols=245 Identities=37% Similarity=0.638 Sum_probs=196.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
|.+.|++++|++.+++.+.+.+.. +.+++.+..+|...+.++||+||||||||++|+++|++++.+++.++++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999887655 7888889999999999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC----chHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG----GWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~----~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
.|.+...++.+|..+....|+||||||+|.+..++.... .......++.++..+++.....+++||++||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 999999999999999988899999999999987764422 2233567888999999877778999999999999999
Q ss_pred ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCH--HHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 580 RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDL--HTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 580 ~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~--~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
++++|||||+..+++++|+.++|.+|++.+++..+...+.++ ..++ ..+.||+|+||+++|++|+..|+++...
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~--~~~~g~~~~~l~~l~~~a~~~a~~~~~~-- 235 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLA--ELTPGFSGADIANICNEAALHAAREGHT-- 235 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHH--HTCTTCCHHHHHHHHHHHHTC---------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHcCCC--
Confidence 999999999999999999999999999999998776654433 5566 5678999999999999999888766432
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCC
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
.|+.+||..|+.++.+
T Consensus 236 ---------~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 236 ---------SVHTLNFEYAVERVLA 251 (262)
T ss_dssp ----------CCBCCHHHHHHHHHH
T ss_pred ---------CCCHHHHHHHHHHhcc
Confidence 6899999999998754
No 40
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=2.3e-31 Score=271.37 Aligned_cols=244 Identities=41% Similarity=0.685 Sum_probs=212.7
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|..+|++++|++.++..+.+... .+..+..+..+++..+.|++|+||||||||+++++++..++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 34577899999999999999988554 46778889999999999999999999999999999999999999999999998
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
..+.+.....++.+|+.+....|+++||||+|.+...+... ......+.+++++..|++......++++++||.|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 88888888889999999987789999999999998766432 233456788999999999877778999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++|++||+..++++.|+.++|.+||+.+++...+..+.++..++ ..+.||+|+||+++|++|+..|..+..
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la--~~~~G~~~~dl~~~~~~a~~~a~~~~~--- 241 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGR--- 241 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcC---
Confidence 999999999999999999999999999999999888888888899999 678999999999999999988876532
Q ss_pred CCCCCCCCccccHHHHHHHHh
Q 045279 658 KSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~ 678 (702)
..|+.+||++|++
T Consensus 242 --------~~I~~~dl~~a~~ 254 (254)
T 1ixz_A 242 --------RKITMKDLEEAAS 254 (254)
T ss_dssp --------SSBCHHHHHHHTC
T ss_pred --------CCcCHHHHHHHhC
Confidence 2699999999863
No 41
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=6.9e-31 Score=287.31 Aligned_cols=246 Identities=46% Similarity=0.672 Sum_probs=210.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+.++|+||+|++++|+++.+.+. .+..+..+..++.+.+.++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 356799999999999999998774 4677888888899999999999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.....++.+|..+....|+||||||+|.+...++.. .+....+.+..|+..|+++..
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~----------------- 151 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS----------------- 151 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-----------------
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-----------------
Confidence 999988999999999999999999999999998766532 233445678889998886432
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
+..++||++||.++.+||+++|+|||+..+.++.|+.++|.+|++.+++...+..+.++..++..++||+++||.++|++
T Consensus 152 ~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 152 KEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNE 231 (476)
T ss_dssp GGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHH
Confidence 23499999999999999999999999999999999999999999999988877777789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 355 AGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 355 a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
|+..+.++ ....|+.+||..++..+.+
T Consensus 232 Aal~A~~~--------------------------------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 232 AALLAARE--------------------------------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHT--------------------------------TCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHc--------------------------------CCCeecHHHHHHHHHHHhc
Confidence 98776532 0135788999998887654
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=1.7e-31 Score=293.38 Aligned_cols=235 Identities=34% Similarity=0.570 Sum_probs=197.7
Q ss_pred ccccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEec
Q 045279 113 EELKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-GVPFYKISA 191 (702)
Q Consensus 113 ~~~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~i~~ 191 (702)
......+.++|++|+|++.+++.|.+.+..|+.+|+++.. +..+++++||+||||||||++|+++|+.+ +.+|+.+++
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3344577889999999999999999999999999998874 35677999999999999999999999999 889999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+++...+.|..+..+..+|..+....|+||||||||.+.+.+.........++.+.|+..+++...
T Consensus 202 ~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-------------- 267 (444)
T 2zan_A 202 SDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-------------- 267 (444)
T ss_dssp C---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC--------------
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc--------------
Confidence 999999999998899999999998899999999999998776655555667888888888876421
Q ss_pred CCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHH
Q 045279 272 DSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAA 350 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~ 350 (702)
.+.+++||+|||.++.+|++++| ||+..+.++.|+.++|..||+.++...... ...++..++..+.||+++||..
T Consensus 268 --~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~ 343 (444)
T 2zan_A 268 --DNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISI 343 (444)
T ss_dssp --CCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHH
T ss_pred --CCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 23459999999999999999999 999999999999999999999998876543 4567889999999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 045279 351 LANKAGNLAMKRIIDQ 366 (702)
Q Consensus 351 l~~~a~~~a~~r~~~~ 366 (702)
+|+.|+..++++....
T Consensus 344 l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 344 IVRDALMQPVRKVQSA 359 (444)
T ss_dssp HHHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987654
No 43
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=6e-33 Score=285.49 Aligned_cols=254 Identities=36% Similarity=0.609 Sum_probs=213.7
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK 502 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 502 (702)
.+...|++++|++.+++.+.+.+.. +.+++.+.+++...+.++||+||||||||++|+++|..++.+++.++++++.+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4677899999999999999986654 789999999999999999999999999999999999999999999999999999
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCC----chHHHHHHHHHHHhhhCCCC-CCcEEEEEecCCCCc
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEG----GWVVERLLNQLLIELDGADK-RKGVFVIGATNRPDV 577 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~----~~~~~~~~~~ll~~l~~~~~-~~~~~vI~atn~~~~ 577 (702)
|.|.++..++.+|..+....|+||||||+|.+...+.... .....+.++.|+..+++... ..+++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 9998888888999999988999999999999987653221 11123467788888887643 355899999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++|+|||+..++|++|+.++|..||+.+++...+..+.+++.++ ..+.||+|+||+++|++|+..|..+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la--~~~~g~~g~dl~~l~~~a~~~a~~~~---- 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVA--KLTAGLAGADLANIINEAALLAGRNN---- 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTT--SSSCSSCHHHHHHHHHHHHHTTSSSC----
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999999999999999999999999999999988877778888888 56889999999999999987765432
Q ss_pred CCCCCCCCccccHHHHHHHHhhcCCCCCHHHHH
Q 045279 658 KSSSDVTPFTIKLTHFEQALSKISPSVSELQIQ 690 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~ 690 (702)
...|+.+|+..|+..+.|+...+...
T Consensus 238 -------~~~i~~~~~~~a~~~~~~~~~~~~~~ 263 (268)
T 2r62_A 238 -------QKEVRQQHLKEAVERGIAGLEKKLEH 263 (268)
T ss_dssp -------CCSCCHHHHHTSCTTCCCCCC-----
T ss_pred -------cCCcCHHHHHHHHHHHhhcchhhhhh
Confidence 12799999999999999987765433
No 44
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=6.3e-30 Score=264.27 Aligned_cols=244 Identities=41% Similarity=0.685 Sum_probs=212.1
Q ss_pred cccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 421 SAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 421 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
...|...|++++|++.++..+.+.+. .+..+..+..+++..+.|++|+||||||||+++++++..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 33478899999999999999988554 46778889999999999999999999999999999999999999999999988
Q ss_pred ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc
Q 045279 501 NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV 577 (702)
Q Consensus 501 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ 577 (702)
..+.+.....+..+|+.+....|+++||||+|.+...+... ......+.+++++.+|++......++++++||.|+.
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTS
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchh
Confidence 88888888889999999987789999999999998665431 223456788999999998877778999999999999
Q ss_pred cCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Q 045279 578 MDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISS 657 (702)
Q Consensus 578 ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~ 657 (702)
+|++++|++||+..++|++|+.++|.+||+.+++...+..+.++..++ ..+.||+|+||+++|++|+..|..+..
T Consensus 191 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a~~~~~--- 265 (278)
T 1iy2_A 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA--KRTPGFVGADLENLLNEAALLAAREGR--- 265 (278)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC---
Confidence 999999999999999999999999999999999888887888899998 678999999999999999988776432
Q ss_pred CCCCCCCCccccHHHHHHHHh
Q 045279 658 KSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 658 ~~~~~~~~~~i~~~d~~~al~ 678 (702)
..|+.+||++|++
T Consensus 266 --------~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 266 --------RKITMKDLEEAAS 278 (278)
T ss_dssp --------CSBCHHHHHHHTC
T ss_pred --------CCcCHHHHHHHhC
Confidence 2699999999863
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.97 E-value=2.2e-30 Score=268.74 Aligned_cols=247 Identities=43% Similarity=0.720 Sum_probs=214.4
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+.++|++|+|++.+++.|.+.+..++.+++.+..+|+.++.++||+||||||||++|+++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.+.|.....+..+|..+....|+||||||+|.+...+... ......+.+..++..+++...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~---------------- 153 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA---------------- 153 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS----------------
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC----------------
Confidence 9999999999999999999999999999999998765432 122334555566666654321
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
.++++||+|||.++.+++++++++||+..+.++.|+.++|.+|++.+++........++..++..+.||+++++..+|+
T Consensus 154 -~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~ 232 (285)
T 3h4m_A 154 -RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICT 232 (285)
T ss_dssp -SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHH
T ss_pred -CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999999999999999999999999999998888777788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
.|...+..+. ...|+.+|+..++..+.
T Consensus 233 ~a~~~a~~~~--------------------------------~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 233 EAGMNAIREL--------------------------------RDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp HHHHHHHHTT--------------------------------CSSBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--------------------------------cCcCCHHHHHHHHHHHH
Confidence 9988775531 12578889988887654
No 46
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=7.3e-30 Score=260.71 Aligned_cols=226 Identities=43% Similarity=0.665 Sum_probs=192.2
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..+|++|+|++.+++++.+.+ ..+.++..+..++...+.+++|+||||||||++|+++|+.++.+++.++++++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 34568999999999999999766 44777777788888889999999999999999999999999999999999999988
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
+.|.....+..+|+.+....|+++||||+|.+...++.. ......+.+..++..+++...
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------------- 147 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG----------------- 147 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-----------------
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-----------------
Confidence 899999999999999988889999999999998765432 122334667788888875421
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANK 354 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~ 354 (702)
+.+++||++||.++.+++++.|++||+..+.++.|+.++|.+|++.+++...+....++..++..++||+++||..+|+.
T Consensus 148 ~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 148 NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNE 227 (257)
T ss_dssp SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999988877777778899999999999999999999
Q ss_pred HHHHHHH
Q 045279 355 AGNLAMK 361 (702)
Q Consensus 355 a~~~a~~ 361 (702)
|...+..
T Consensus 228 a~~~a~~ 234 (257)
T 1lv7_A 228 AALFAAR 234 (257)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877654
No 47
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=257.72 Aligned_cols=224 Identities=38% Similarity=0.601 Sum_probs=176.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
.++|++|+|++.+++.+.+.+. .+.+++.+..+|...+.++||+||||||||++|+++|+.++.+++.++++++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4689999999999999998764 478888888889999999999999999999999999999999999999999988888
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh----HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ----REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
+.....+..+|..+....|+||||||+|.+...+.... .......+..++..+++.. .+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----------------~~ 143 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----------------TT 143 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-----------------TT
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-----------------CC
Confidence 88888899999999988899999999999986654321 1223345666777776532 13
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc--HHHHHhhCCCCCHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD--LVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~--~~~la~~t~g~~~~dl~~l~~ 353 (702)
.+++||+|||.++.+|++++++|||+..+.++.|+.++|.+|++.+++........+ ...++..+.||+++++..+|+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 459999999999999999999999999999999999999999999988776654433 467899999999999999999
Q ss_pred HHHHHHHH
Q 045279 354 KAGNLAMK 361 (702)
Q Consensus 354 ~a~~~a~~ 361 (702)
.|...+..
T Consensus 224 ~a~~~a~~ 231 (262)
T 2qz4_A 224 EAALHAAR 231 (262)
T ss_dssp HHHTC---
T ss_pred HHHHHHHH
Confidence 98776643
No 48
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=7e-29 Score=265.40 Aligned_cols=261 Identities=33% Similarity=0.528 Sum_probs=210.9
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..+|++|+|++.+++.|.+.+..++.+++++...+ .++.++||+||||||||++|+++|+.++.+|+.++++++...
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 3466999999999999999999999999999887654 667899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.|.....+..+|..+....|+||||||||.+...+.........++...++..+++... ..+.+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~---------------~~~~~ 221 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT---------------SSEDR 221 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------------CCCC
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc---------------cCCCC
Confidence 999999999999999998899999999999998876555556667888889998886431 12345
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
++||+|||.++.+++++++ ||+..+.++.|+.++|.+|+..++...... ....+..++..+.||+++|+..+|+.|.
T Consensus 222 v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp EEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999988765543 2346788999999999999999999998
Q ss_pred HHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 357 NLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 357 ~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
..++++...... . ... ......|+.+||..++..+.|+..
T Consensus 300 ~~~ir~l~~~~~--------~----------~~~--~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 300 LGPIRSLQTADI--------A----------TIT--PDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp THHHHHCCC------------------------------CCCBCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHhhhhhh--------c----------ccc--ccccCCcCHHHHHHHHHhcCCCCC
Confidence 777664211000 0 000 011246899999999998877543
No 49
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=269.98 Aligned_cols=262 Identities=33% Similarity=0.553 Sum_probs=202.8
Q ss_pred ccCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 115 LKGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 115 ~~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
....+..+|++|+|++.+++.|.+.+..++.+++++..++ .++.++||+||||||||++|+++|++++.+|+.++++++
T Consensus 106 ~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l 184 (389)
T 3vfd_A 106 VDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASL 184 (389)
T ss_dssp BCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC
T ss_pred hccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHh
Confidence 3345677999999999999999999999999999888765 457899999999999999999999999999999999999
Q ss_pred hcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
...+.|.....+..+|..+....|+||||||||.+...+.........++...|+..+++... ..
T Consensus 185 ~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------------~~ 249 (389)
T 3vfd_A 185 TSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS---------------AG 249 (389)
T ss_dssp -------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------------
T ss_pred hccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc---------------cC
Confidence 999999999999999999999999999999999998776554455567788889998886542 11
Q ss_pred CCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 275 PGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 275 ~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
+.+|+||+|||.++.+++++++ ||...+.++.|+.++|.+|+..++...... ....+..++..+.||+++++..+|+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3459999999999999999999 999899999999999999999988775543 2346788999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~ 414 (702)
.|...+.+++........ . ......|+.+||..++..+.++
T Consensus 328 ~a~~~~~rel~~~~~~~~-------------~-------~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 328 DAALGPIRELKPEQVKNM-------------S-------ASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp HHTTHHHHTSCCC---CC-------------S-------SSCCCCCCHHHHHHHHHHCCCS
T ss_pred HHHHHHHHhhhhhhhhcc-------------c-------hhhcCCcCHHHHHHHHHHcCCC
Confidence 988777654221100000 0 0012368889999998876554
No 50
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=5.6e-29 Score=273.81 Aligned_cols=246 Identities=44% Similarity=0.647 Sum_probs=209.0
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGV 198 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~ 198 (702)
+.++|++|+|+++++.++.+.+. .+..+..+..+++..+.+++|+||||||||+||++||+.++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 67799999999999999997764 46777888888999999999999999999999999999999999999999999888
Q ss_pred ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 045279 199 SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKP 275 (702)
Q Consensus 199 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 275 (702)
.|.....+..+|+.+....|+++||||||.+...++.. ......+.+++++..|++... .
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-----------------~ 167 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----------------D 167 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-----------------S
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-----------------C
Confidence 88888889999999877789999999999998655421 123345667788888875432 2
Q ss_pred CeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 276 GYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 276 ~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..+++|++||.++.+|++++|+|||+..+.++.|+.++|.+||+.+++...+..+.++..++..++||+++||.++|++|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34899999999999999999999999999999999999999999998887777777899999999999999999999998
Q ss_pred HHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCC
Q 045279 356 GNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPS 414 (702)
Q Consensus 356 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~ 414 (702)
+..+.++ ....|+.+||..++..+.+.
T Consensus 248 a~~A~~~--------------------------------~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 248 ALLAARE--------------------------------GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHTTT--------------------------------CCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHh--------------------------------CCCccCHHHHHHHHHHHhcc
Confidence 8765431 01357888999998876554
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=1.2e-28 Score=257.33 Aligned_cols=261 Identities=33% Similarity=0.505 Sum_probs=208.0
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..+|++|+|++.+++.+.+.+..++.+|+++..++ .++.++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4567999999999999999999999999998877654 457899999999999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
+.|.....++.+|..+....|+||||||+|.+...++....+...++...++..+++.... ....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------------~~~~~ 159 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------------PDGDR 159 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------------C
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------------CCCCc
Confidence 9999888899999999988999999999999987765543344456677888888864320 01234
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-CcccHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSFDLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
++||++||.++.+++++++ ||+..+.++.|+.++|..|+..++...... ....+..++..+.||+++++..+|+.|.
T Consensus 160 v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAA 237 (297)
T ss_dssp EEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999988766543 2345788999999999999999999998
Q ss_pred HHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 357 NLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 357 ~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
..+.++......... . ......|+.+||..++..++|+.
T Consensus 238 ~~a~r~~~~~~~~~~-----~---------------~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 238 LEPIRELNVEQVKCL-----D---------------ISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp THHHHTCC----------------------------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred HHHHHHHhhhhcccc-----c---------------ccccCCcCHHHHHHHHHHcCCCC
Confidence 877664311100000 0 00123689999999998877654
No 52
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=6.5e-28 Score=245.78 Aligned_cols=228 Identities=44% Similarity=0.663 Sum_probs=190.2
Q ss_pred cCCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 116 KGKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 116 ~~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
...+.++|++++|+++++.++.+.+.. +..+..+...++..+.+++|+|||||||||+++++++.++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 345677999999999999999876643 4556667777888888999999999999999999999999999999999988
Q ss_pred cccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
..+.+.....+..+|+.+....|+++|+||+|.+...+... ......+.+..++..+++...
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--------------- 151 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--------------- 151 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT---------------
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC---------------
Confidence 88888888888999999877788999999999987654321 123335667778887775322
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
...++++++||.++.+|++++|++||+..+.++.|+.++|.+||+.+++...+..+.++..++..++||+++||..+|
T Consensus 152 --~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~ 229 (254)
T 1ixz_A 152 --DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLL 229 (254)
T ss_dssp --TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred --CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 234899999999999999999999999999999999999999999988887777777899999999999999999999
Q ss_pred HHHHHHHHH
Q 045279 353 NKAGNLAMK 361 (702)
Q Consensus 353 ~~a~~~a~~ 361 (702)
++|...+.+
T Consensus 230 ~~a~~~a~~ 238 (254)
T 1ixz_A 230 NEAALLAAR 238 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876654
No 53
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=8e-28 Score=281.78 Aligned_cols=261 Identities=38% Similarity=0.614 Sum_probs=234.1
Q ss_pred ccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 422 AIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 422 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
..+.+.|++|+|++.+++.+.+.+..++.+++.|..++..++.+++|+||||||||++|+++|..++.+++.++++++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCcc
Q 045279 502 KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRA 581 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a 581 (702)
.|.|+.+..++.+|+.+....|++|||||+|.+.++++........++++.|+..|++......+++|+|||+++.+|++
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~a 356 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTT
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHH
Confidence 99999999999999999988999999999999999887777777789999999999999888899999999999999999
Q ss_pred ccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCC--
Q 045279 582 VLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKS-- 659 (702)
Q Consensus 582 ~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~-- 659 (702)
+.+++||+..+.++.|+.++|..|++.++.+..+..+.++..++ ..+.+|+++|+..+|++|+..++++.......
T Consensus 357 l~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la--~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~ 434 (806)
T 1ypw_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA--NETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434 (806)
T ss_dssp TTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHH--HSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH
T ss_pred HhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHH--HhhcCcchHHHHHHHHHHHHHHHhhhccccchhh
Confidence 99999999999999999999999999999998888888999999 56889999999999999999888765421100
Q ss_pred ----CCCCCCccccHHHHHHHHhhcCCCC
Q 045279 660 ----SSDVTPFTIKLTHFEQALSKISPSV 684 (702)
Q Consensus 660 ----~~~~~~~~i~~~d~~~al~~~~~~~ 684 (702)
........++..|+..++....|+.
T Consensus 435 ~~~~~~~~~~~~v~~~d~~~al~~~~~s~ 463 (806)
T 1ypw_A 435 ETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp HHCCHHHHTTCCCCTTHHHHHHHHSCCCC
T ss_pred hccchhhhhhhhhhhhhhhccccccCchh
Confidence 0001234578889999998887653
No 54
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.96 E-value=1.1e-29 Score=280.60 Aligned_cols=365 Identities=21% Similarity=0.244 Sum_probs=233.6
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechhhhc
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG--VPFYKISATEVVS 196 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~~l~~ 196 (702)
+...|++|+|++++++.+.+.+... ..+..+++++||+||||||||++|+++|+.++ .+|+.++++++..
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4457999999999999988766332 12556778999999999999999999999999 9999999999999
Q ss_pred ccccccHHHHHHHHHHH---HhhCCceEEechhhHhhhcchhhhHHHHH-------------------HHHHHHHHHHhh
Q 045279 197 GVSGASEENIRDLFSKA---YRTAPSIVFIDEIDAIASKRENLQREMER-------------------RIVTQLMTCMDE 254 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a---~~~~p~il~iDEid~l~~~~~~~~~~~~~-------------------~~~~~ll~~ld~ 254 (702)
.+.|.++. +..+|..+ ....|+||||||+|.+++.+......... ++...++..++.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 89999998 66789999999999999876543211111 111234444442
Q ss_pred hccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcce--EEEeCCC--CHHHHHHHHHHhhcCcccCCc
Q 045279 255 SHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDR--EIVLGVP--DENARVQILSVLTRNLRVEGS 330 (702)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~--~i~~~~p--~~~er~~Il~~~~~~~~~~~~ 330 (702)
... .....++|++|||.++.+|+++.|++||+. .+.++.| +.++|.+|++.+..
T Consensus 183 ~~~---------------~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~------- 240 (456)
T 2c9o_A 183 ERV---------------EAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL------- 240 (456)
T ss_dssp TTC---------------CTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------
T ss_pred ccC---------------CCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------
Confidence 110 012235556899999999999999999988 4566666 44777777764432
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhc
Q 045279 331 FDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKM 410 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~ 410 (702)
.++..++..+.| |+|+.++|......... .+.
T Consensus 241 ~dl~~~a~~t~g--gadl~~l~~~i~~p~~~------------------------------------~I~---------- 272 (456)
T 2c9o_A 241 HDLDVANARPQG--GQDILSMMGQLMKPKKT------------------------------------EIT---------- 272 (456)
T ss_dssp HHHHHTC-------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCC--hhHHHHHHhhhcccchh------------------------------------hHH----------
Confidence 257778888888 88888887532100000 000
Q ss_pred cCCCCcCccccccCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe
Q 045279 411 VQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN 490 (702)
Q Consensus 411 ~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~ 490 (702)
..+.+.+..
T Consensus 273 ------------------------~~lr~~I~~----------------------------------------------- 281 (456)
T 2c9o_A 273 ------------------------DKLRGEINK----------------------------------------------- 281 (456)
T ss_dssp ----------------------------CHHHH-----------------------------------------------
T ss_pred ------------------------HHHHHHHHH-----------------------------------------------
Confidence 000000000
Q ss_pred EEEEecccccccCcCchHHHHHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEE
Q 045279 491 FIHIKGPELLNKYVGESELAVRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVI 569 (702)
Q Consensus 491 ~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 569 (702)
.+...+.... ...|+|+||||+|.+. .+.++.|+..|+..... ++|+
T Consensus 282 -------------------~l~~~~~~g~~~v~~~VliIDEa~~l~-----------~~a~~aLlk~lEe~~~~--~~il 329 (456)
T 2c9o_A 282 -------------------VVNKYIDQGIAELVPGVLFVDEVHMLD-----------IECFTYLHRALESSIAP--IVIF 329 (456)
T ss_dssp -------------------HHHHHHHTTSEEEEECEEEEESGGGCB-----------HHHHHHHHHHTTSTTCC--EEEE
T ss_pred -------------------HHHHHHHhccccccceEEEEechhhcC-----------HHHHHHHHHHhhccCCC--EEEE
Confidence 0001111111 0123699999999998 88999999999976443 5444
Q ss_pred Ee---------cC---CCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHH
Q 045279 570 GA---------TN---RPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGA 636 (702)
Q Consensus 570 ~a---------tn---~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~ 636 (702)
++ |+ .++.+++.+++ ||.. +.|++|+.++..++++..+.......+ ..+..++ .++..-+.+
T Consensus 330 ~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~--~~a~~g~~r 404 (456)
T 2c9o_A 330 ASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLG--EIGTKTTLR 404 (456)
T ss_dssp EECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH--HHHHHSCHH
T ss_pred ecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH--HHccCCCHH
Confidence 44 22 16788889988 9975 699999999999999988765443322 2344455 222112667
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 637 DLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 637 dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
..-++++.|...|..+.. ..|+.+|+.+|+..+-
T Consensus 405 ~a~~ll~~a~~~A~~~~~-----------~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 405 YSVQLLTPANLLAKINGK-----------DSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHHTHHHHHHHHHHTTC-----------SSBCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhhcCC-----------CccCHHHHHHHHHHhc
Confidence 777777777766665432 2799999999998874
No 55
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=1.2e-26 Score=239.63 Aligned_cols=227 Identities=44% Similarity=0.660 Sum_probs=188.0
Q ss_pred CCCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 117 GKEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 117 ~~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+.++|++|+|++++++++.+.+. .+..+..+...++..+.+++|+|||||||||++++|++.++..++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 3467799999999999999987664 345556666777888888999999999999999999999999999999999888
Q ss_pred ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.+.+.....+..+|+.+....|+++|+||+|.+....... ......+.+..++..+++...
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~---------------- 175 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------------- 175 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT----------------
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC----------------
Confidence 7778777888999999987788999999999987554321 122234556667776664321
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
...++++++||.++.+|++++|++||+..+.++.|+.++|.+||+.+++...+....++..++..++||+++||..+|+
T Consensus 176 -~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~ 254 (278)
T 1iy2_A 176 -DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 254 (278)
T ss_dssp -TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred -CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 2348999999999999999999999999999999999999999999888777777778999999999999999999999
Q ss_pred HHHHHHHH
Q 045279 354 KAGNLAMK 361 (702)
Q Consensus 354 ~a~~~a~~ 361 (702)
.|...+..
T Consensus 255 ~a~~~a~~ 262 (278)
T 1iy2_A 255 EAALLAAR 262 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98876643
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=2e-29 Score=259.20 Aligned_cols=249 Identities=39% Similarity=0.589 Sum_probs=196.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+..+|++|+|++.+++.+.+.+. .+.+++.+..++...+.++||+||||||||++|+++|+.++.+++.++++.+...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 345689999999999999998664 4777888888888999999999999999999999999999999999999999888
Q ss_pred cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhH----HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQR----EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~----~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
+.|.....+..+|..+....|+||||||+|.+...+..... ....+.+..|+..+++.. .
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------~ 147 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG----------------S 147 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS----------------C
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc----------------c
Confidence 88877777788999998888999999999999865422110 000112233443333211 1
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHH
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALAN 353 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~ 353 (702)
...+++||+|||.++.+|+++++++||+..+.++.|+.++|.+|++.+++........++..++..+.||+++||.++|+
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 23458999999999999999999999999999999999999999999998877666667888999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCC
Q 045279 354 KAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSS 415 (702)
Q Consensus 354 ~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~ 415 (702)
.|...+..+ ....|+.+++..++....|..
T Consensus 228 ~a~~~a~~~--------------------------------~~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 228 EAALLAGRN--------------------------------NQKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp HHHHTTSSS--------------------------------CCCSCCHHHHHTSCTTCCCCC
T ss_pred HHHHHHHHh--------------------------------ccCCcCHHHHHHHHHHHhhcc
Confidence 887654211 013577888888877766544
No 57
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.94 E-value=1.4e-25 Score=241.73 Aligned_cols=391 Identities=21% Similarity=0.244 Sum_probs=201.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVR-PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGA 201 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~-~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~ 201 (702)
++|+|++++|+.+...+..+++++.++..+... ++.++||+||||||||++|+++|+.++.+|+.++++.+.. +|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 478999999999998888877666555444332 5688999999999999999999999999999999999888 58885
Q ss_pred -cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 202 -SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 202 -~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
.+..++.+|+.+... +++||++.+.. .......++++..|+.+||++.. .+.+
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~---~~~~~~e~rvl~~LL~~~dg~~~-----------------~~~v-- 148 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRA---RAEDVAEERILDALLPPAKNQWG-----------------EVEN-- 148 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhc---cchhhHHHHHHHHHHHHhhcccc-----------------cccc--
Confidence 788889999988664 45899876643 33455678999999999997642 1223
Q ss_pred EEe-cCCCCCCCccccCCCCcceEEEeCCCCHH-HHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 281 IGA-TNRPDAVDPALRRPGRFDREIVLGVPDEN-ARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 281 I~a-tn~~~~ld~al~r~~Rf~~~i~~~~p~~~-er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
+++ ||.++.+|++|+|++||++.|+++.|+.. .+.+|+.. ..+ ... +.++..++...
T Consensus 149 ~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~--~g~--------~~~--------~~~~~~~~~~~--- 207 (444)
T 1g41_A 149 HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP--PGM--------EEM--------TNQLQSLFQNL--- 207 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC--CCh--------HHH--------HHHHHHHHHhh---
Confidence 455 99999999999999999999999999987 67777653 000 000 00000000000
Q ss_pred HHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCccccccCCccccccCCcccch
Q 045279 359 AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLR 438 (702)
Q Consensus 359 a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k 438 (702)
.|. ..
T Consensus 208 -----------------------------------------------------~~~--------------------~~-- 212 (444)
T 1g41_A 208 -----------------------------------------------------GSD--------------------KT-- 212 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------------------cCC--------------------CC--
Confidence 000 00
Q ss_pred hhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHH
Q 045279 439 HEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA 518 (702)
Q Consensus 439 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a 518 (702)
..|+..++ +. ..+-..+-..+.+ ..+...+....+|
T Consensus 213 -----------------------------------~~~~~~v~----~a----~~~l~~~e~~~l~-~~~~~~~~ai~~a 248 (444)
T 1g41_A 213 -----------------------------------KKRKMKIK----DA----LKALIDDEAAKLI-NPEELKQKAIDAV 248 (444)
T ss_dssp --------------------------------------------------------CCGGGSCSSC-CHHHHHHHHHHHH
T ss_pred -----------------------------------cceeeeHH----HH----HHHHHHHHHHHcc-CHHHHHHHHHHHh
Confidence 00000000 00 0000111112222 2344455566665
Q ss_pred HhCCCeEEEEeCcchhhcccCCCCchHH-HHHHHHHHHhhhCC--------CCCCcEEEEEec----CCCCccCccccCC
Q 045279 519 RTCSPCILFFDEVDALTTKRGKEGGWVV-ERLLNQLLIELDGA--------DKRKGVFVIGAT----NRPDVMDRAVLRP 585 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~--------~~~~~~~vI~at----n~~~~ld~a~~r~ 585 (702)
. ..+|||+||+|+++.+.+....+.. ..+++.||..|++. ....++++|||. +.+..+.|.|+.
T Consensus 249 e--~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~- 325 (444)
T 1g41_A 249 E--QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG- 325 (444)
T ss_dssp H--HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT-
T ss_pred c--cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc-
Confidence 2 2269999999999965443344444 34888999999974 246778999887 234445578877
Q ss_pred CccceEEEcCCCCHHHHHHHHH---H--------HhccCCCC---CCCCHHHHhhh-----hcCCCCCHHHHHHHHHHHH
Q 045279 586 GRFGKLLYVPLPTPDERGLILE---A--------LARKKPID---DSVDLHTIAQS-----KFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 586 gRf~~~i~~~~p~~~~r~~il~---~--------~~~~~~~~---~~~~~~~la~~-----~~~~~~sg~dl~~~~~~a~ 646 (702)
||+.++.|+.++.++..+|+. . .+...+.. .+..+..++.. .++....++.|++++..++
T Consensus 326 -R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~ 404 (444)
T 1g41_A 326 -RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLM 404 (444)
T ss_dssp -TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH
T ss_pred -ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHH
Confidence 999999999999999999993 1 11112221 22335566653 2456777899999999888
Q ss_pred HHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHH
Q 045279 647 MAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRY 692 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~ 692 (702)
..+..+.... ......|+.+++...+. +.+...++.+|
T Consensus 405 ~~~~~~~~~~-----~~~~~~i~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 405 DKISFSASDM-----NGQTVNIDAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp HHHHHHGGGC-----TTCEEEECHHHHHHHHT---TTTTCHHHHHH
T ss_pred HHHHhhcccc-----CCCeEEEeHHHHHHhcC---ccccCCChhcc
Confidence 7766655431 22446799999987765 44556677776
No 58
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=3.2e-26 Score=237.83 Aligned_cols=173 Identities=22% Similarity=0.334 Sum_probs=136.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHH----HhCCCeEEEEeCcchh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRA----RTCSPCILFFDEVDAL 534 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~~~vl~iDEid~l 534 (702)
+.++|.++||+||||||||++|+++|+.++.+|+.++++++.+.|+|.++..++.+|..| +...|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999998 5678999999999999
Q ss_pred hcccCCCC--chHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHH
Q 045279 535 TTKRGKEG--GWVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDE 601 (702)
Q Consensus 535 ~~~r~~~~--~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~ 601 (702)
.++++... ......+++.|+..||+.. ...+++||+|||+++.+|++++|||||+..++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 98654322 1234577899999988432 45679999999999999999999999998887 469999
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHH
Q 045279 602 RGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLA 639 (702)
Q Consensus 602 r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~ 639 (702)
|.+|++.++... +.+.+.++ ..+.+|+|++|.
T Consensus 190 r~~Il~~~~~~~----~~~~~~l~--~~~~~~~~~~l~ 221 (293)
T 3t15_A 190 RIGVCTGIFRTD----NVPAEDVV--KIVDNFPGQSID 221 (293)
T ss_dssp HHHHHHHHHGGG----CCCHHHHH--HHHHHSCSCCHH
T ss_pred HHHHHHHhccCC----CCCHHHHH--HHhCCCCcccHH
Confidence 999999888754 45577777 567899998875
No 59
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.89 E-value=7.8e-24 Score=219.78 Aligned_cols=185 Identities=19% Similarity=0.276 Sum_probs=135.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHH----HhhCCceEEechhhHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKA----YRTAPSIVFIDEIDAI 229 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a----~~~~p~il~iDEid~l 229 (702)
+.+++.++||+||||||||++|+++|+.++.+++.++++++.+.+.|..+..+..+|..+ ....|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567889999999999999999999999999999999999999999999999999999998 4668999999999999
Q ss_pred hhcchhhh--HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeC
Q 045279 230 ASKRENLQ--REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLG 307 (702)
Q Consensus 230 ~~~~~~~~--~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~ 307 (702)
.+...... ....+.+...|+..+++.......+... .....+++||+|||.++.+|++++|+|||+..+.
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~------~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-- 183 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN------KQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 183 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccc------cccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--
Confidence 87543221 1233566788999888543211111000 0123459999999999999999999999988776
Q ss_pred CCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHH
Q 045279 308 VPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAA 350 (702)
Q Consensus 308 ~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~ 350 (702)
.|+.++|.+|++.++... ..+...++..+.+|+++++..
T Consensus 184 ~P~~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 184 APTREDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CCCHHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred CcCHHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 579999999999877643 345778888889999888764
No 60
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.88 E-value=7.2e-25 Score=241.95 Aligned_cols=201 Identities=22% Similarity=0.275 Sum_probs=143.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC--CeEEEEecccccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG--ANFIHIKGPELLN 501 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~ 501 (702)
|...|++++|++.+++.+...+... ..+..++.++||+||||||||++|+++|+.++ .+|+.++++++.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 5567999999999999887765432 34666789999999999999999999999998 9999999999999
Q ss_pred cCcCchHHHHHHHHHHH---HhCCCeEEEEeCcchhhcccCCCCchHHH-------------------HHHHHHHHhhh-
Q 045279 502 KYVGESELAVRTLFSRA---RTCSPCILFFDEVDALTTKRGKEGGWVVE-------------------RLLNQLLIELD- 558 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~r~~~~~~~~~-------------------~~~~~ll~~l~- 558 (702)
+|+|+++. ++.+|..| +...|+||||||+|.++++|+....+... ++.+.++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999998 89999999 77889999999999999988654221111 12233555554
Q ss_pred -CCCCCCcEEEEEecCCCCccCccccCCCccce--EEEcCCCC--HHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCC
Q 045279 559 -GADKRKGVFVIGATNRPDVMDRAVLRPGRFGK--LLYVPLPT--PDERGLILEALARKKPIDDSVDLHTIAQSKFCENL 633 (702)
Q Consensus 559 -~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~--~i~~~~p~--~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~ 633 (702)
+....+.++|++|||+++.+|+++.||||||. .+++|.|+ .++|.+|++.+... +++.++ ..+.|
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~-------dl~~~a--~~t~g- 252 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH-------DLDVAN--ARPQG- 252 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH-------HHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH-------HHHHHH--HhCCC-
Confidence 33445567777999999999999999999998 56777775 46677776654421 577777 45677
Q ss_pred CHHHHHHHHHH
Q 045279 634 SGADLAAMMNE 644 (702)
Q Consensus 634 sg~dl~~~~~~ 644 (702)
|+|+.++|..
T Consensus 253 -gadl~~l~~~ 262 (456)
T 2c9o_A 253 -GQDILSMMGQ 262 (456)
T ss_dssp -----------
T ss_pred -hhHHHHHHhh
Confidence 8999999854
No 61
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=8e-22 Score=206.69 Aligned_cols=218 Identities=15% Similarity=0.203 Sum_probs=169.1
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCC---CcceEEEcCCCCChhHHHHHHHHHh-------CCeEEEEecc
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDL---ETGFLLYGPPGCGKTLIAKAVANEA-------GANFIHIKGP 497 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~~i~~~ 497 (702)
+.+++|++.+++.+.+.+.... .+..+.++|+.. +.++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3479999999999998777654 366666777554 4469999999999999999999987 3489999999
Q ss_pred cccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC-
Q 045279 498 ELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD- 576 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~- 576 (702)
++.+.|+|.....+..+|..+ .++||||||+|.+...++... ...++++.|+..|+.. ..+++||++||...
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~--~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERD--YGQEAIEILLQVMENN--RDDLVVILAGYADRM 181 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---C--CTHHHHHHHHHHHHHC--TTTCEEEEEECHHHH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCccc--ccHHHHHHHHHHHhcC--CCCEEEEEeCChHHH
Confidence 999999999999999999887 568999999999986554322 2267888999988854 45678888888653
Q ss_pred ----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCC-HHHHhhhh----cCCCC-CHHHHHHHHHHHH
Q 045279 577 ----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVD-LHTIAQSK----FCENL-SGADLAAMMNEAA 646 (702)
Q Consensus 577 ----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~-~~~la~~~----~~~~~-sg~dl~~~~~~a~ 646 (702)
.++|++.+ ||+.++.|++|+.+++..|++.++.+.....+.+ ++.++... ....+ ++++++++++.|+
T Consensus 182 ~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 182 ENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp HHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 35799988 9999999999999999999999998766543322 33344210 01233 4799999999999
Q ss_pred HHHHHHHHh
Q 045279 647 MAALEDKLI 655 (702)
Q Consensus 647 ~~a~~~~~~ 655 (702)
..+..+...
T Consensus 260 ~~~~~r~~~ 268 (309)
T 3syl_A 260 LRQANRLFT 268 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 887777654
No 62
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.83 E-value=2.2e-20 Score=195.71 Aligned_cols=216 Identities=17% Similarity=0.252 Sum_probs=165.0
Q ss_pred cc-cccCHHHHHHHHHHHhhhhccCCCcccccCCC---CCceEEEECCCCCCHHHHHHHHHHHh-------CCCeEEEec
Q 045279 123 FQ-DLGGMESVLEELKMEVIVPLYHPQLPQWLGVR---PMAGILLYGPPGCGKTKLAHAIANET-------GVPFYKISA 191 (702)
Q Consensus 123 ~~-~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~---~~~~vLl~GppGtGKT~la~~la~~l-------~~~~~~i~~ 191 (702)
++ +|+|++.+++.|.+.+..+.. +..+...|+. +..++||+||||||||++|+++|+.+ ..+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 799999999999988765432 3333334433 45679999999999999999999988 348999999
Q ss_pred hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCC
Q 045279 192 TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDAS 271 (702)
Q Consensus 192 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~ 271 (702)
+++...+.|.....+..+|..+ .++||||||+|.+....+. .......+..|+..++..
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~---------------- 166 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENN---------------- 166 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHC----------------
T ss_pred HHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcC----------------
Confidence 9999999999888888888887 4569999999999755432 122345677788888753
Q ss_pred CCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhh------
Q 045279 272 DSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARS------ 339 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~------ 339 (702)
+.+++||++||... .++|++++ ||+.++.|+.|+.+++.+|+..++.........+ +..++..
T Consensus 167 ---~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 241 (309)
T 3syl_A 167 ---RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRN 241 (309)
T ss_dssp ---TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTT
T ss_pred ---CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 23488999998753 46899999 9999999999999999999999887665433332 3334433
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045279 340 -TPGFVGADLAALANKAGNLAMKRIID 365 (702)
Q Consensus 340 -t~g~~~~dl~~l~~~a~~~a~~r~~~ 365 (702)
....+++++.++++.+...+..+++.
T Consensus 242 ~~~~gn~r~l~~~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 242 QPHFANARSIRNALDRARLRQANRLFT 268 (309)
T ss_dssp SSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 22346899999999999988888775
No 63
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.81 E-value=8.7e-20 Score=196.04 Aligned_cols=220 Identities=19% Similarity=0.217 Sum_probs=160.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEecccccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLN 501 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~ 501 (702)
|...|++++|.+..+..+....... ..+..++.++||+||||||||++|+++|+.++. +++.+++..+..
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~--------~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMI--------REGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHHH--------HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 4455999999999988766543222 224455689999999999999999999999874 888888877554
Q ss_pred cCcCc-------------------------------------------------hHHHHHHHHHHHHh---------CCC
Q 045279 502 KYVGE-------------------------------------------------SELAVRTLFSRART---------CSP 523 (702)
Q Consensus 502 ~~~g~-------------------------------------------------~~~~~~~~f~~a~~---------~~~ 523 (702)
.+.+. ....++..+..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 44332 23344555544432 126
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec-----------CCCCccCccccCCCccceEE
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT-----------NRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at-----------n~~~~ld~a~~r~gRf~~~i 592 (702)
+||||||+|.+. ...++.|+..++.... .++++++. |.+..+++++++ ||.. +
T Consensus 191 ~vl~IDEi~~l~-----------~~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i 254 (368)
T 3uk6_A 191 GVLFIDEVHMLD-----------IESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-V 254 (368)
T ss_dssp CEEEEESGGGSB-----------HHHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-E
T ss_pred ceEEEhhccccC-----------hHHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-E
Confidence 899999999998 7788888888875432 34444443 347789999999 9975 7
Q ss_pred EcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHH
Q 045279 593 YVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLT 671 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~ 671 (702)
.|++|+.+++..|++..+...+...+ ..++.++ .++.+.+.+++.++|+.|+..|..+.. ..|+.+
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~--~~~~~G~~r~~~~ll~~a~~~A~~~~~-----------~~It~~ 321 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLT--RIGLETSLRYAIQLITAASLVCRKRKG-----------TEVQVD 321 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH--HHHHHSCHHHHHHHHHHHHHHHHHTTC-----------SSBCHH
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHhcCCCHHHHHHHHHHHHHHHHHhCC-----------CCCCHH
Confidence 99999999999999998887554322 3355666 344436889999999999888766532 279999
Q ss_pred HHHHHHhhc
Q 045279 672 HFEQALSKI 680 (702)
Q Consensus 672 d~~~al~~~ 680 (702)
|+.+|+..+
T Consensus 322 ~v~~a~~~~ 330 (368)
T 3uk6_A 322 DIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHHh
Confidence 999999874
No 64
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.81 E-value=4.6e-20 Score=207.18 Aligned_cols=236 Identities=17% Similarity=0.226 Sum_probs=161.1
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN- 501 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~- 501 (702)
.....++++.|+++++..+.+.+........ .++.+++|+||||||||++|+++|..++.++..++++.+..
T Consensus 75 ~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~-------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~ 147 (543)
T 3m6a_A 75 AGRLLDEEHHGLEKVKERILEYLAVQKLTKS-------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDE 147 (543)
T ss_dssp GGGTHHHHCSSCHHHHHHHHHHHHHHHHSSS-------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhccc-------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchh
Confidence 3445677899999999988776544321111 14668999999999999999999999999999999877543
Q ss_pred --------cCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC-----------
Q 045279 502 --------KYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK----------- 562 (702)
Q Consensus 502 --------~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~----------- 562 (702)
.|+|.....+...|..+....| ||||||+|.+...++ ...++.||..|+....
T Consensus 148 ~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~-------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 148 SEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR-------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp ----------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc-------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 5778777778888888766555 999999999986543 2256777777764321
Q ss_pred --CCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc-----cCCCCC------CCCHHHHhhhhc
Q 045279 563 --RKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR-----KKPIDD------SVDLHTIAQSKF 629 (702)
Q Consensus 563 --~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~-----~~~~~~------~~~~~~la~~~~ 629 (702)
..+++||+|||.++.+++++++ ||+ +|.|+.|+.+++..|++.++. ...+.. +..+..++. .+
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~ 295 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIR-YY 295 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHH-HH
T ss_pred ecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHH-hC
Confidence 1578999999999999999999 995 799999999999999988762 223221 122344443 23
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 630 CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 630 ~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+...+.++|++.+..++..+..+.... ......|+.+|+.+++.....
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~-----~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAE-----ERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTT-----CCSCCEECTTTTHHHHCSCCS
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhc-----CCcceecCHHHHHHHhCCccc
Confidence 333455888888888777666665432 223457999999999986654
No 65
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.81 E-value=6.9e-19 Score=224.00 Aligned_cols=418 Identities=17% Similarity=0.220 Sum_probs=236.6
Q ss_pred CCceEEEECCCCCCHHHHHH-HHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHH---------------hhCCce
Q 045279 157 PMAGILLYGPPGCGKTKLAH-AIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAY---------------RTAPSI 220 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~-~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~---------------~~~p~i 220 (702)
.++++||+||||||||++|+ .++...+..++.++++...+ ...+...++... .+.++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 45789999999999999995 45554467788888876532 234445554431 123469
Q ss_pred EEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-----CCCcccc
Q 045279 221 VFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-----AVDPALR 295 (702)
Q Consensus 221 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-----~ld~al~ 295 (702)
+||||+|....+....+ . .+ +++.++-+...++...... ...-.++++|||||++. .|+|+++
T Consensus 1340 lFiDEinmp~~d~yg~q--~---~l-elLRq~le~gg~yd~~~~~------~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQ--N---VV-LFLRQLMEKQGFWKTPENK------WVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEEETTTCSCCCSSSCC--H---HH-HHHHHHHHTSSEECTTTCC------EEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EEecccccccccccCch--h---HH-HHHHHHHhcCCEEEcCCCc------EEEecCEEEEEecCCCccCCCccCChhhh
Confidence 99999986443332211 1 12 2333332322222211100 00113489999999984 8999999
Q ss_pred CCCCcceEEEeCCCCHHHHHHHHHHhhcCcccC-Ccc-c-HH-----------HHH-------hhCCCCCHHHHHHHHHH
Q 045279 296 RPGRFDREIVLGVPDENARVQILSVLTRNLRVE-GSF-D-LV-----------KIA-------RSTPGFVGADLAALANK 354 (702)
Q Consensus 296 r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~-~~~-~-~~-----------~la-------~~t~g~~~~dl~~l~~~ 354 (702)
| || .++.++.|+.+++..|+..++..+... ... . .. .+. +.+--|+.||+.++++.
T Consensus 1408 R--rf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qG 1484 (2695)
T 4akg_A 1408 R--HA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRG 1484 (2695)
T ss_dssp T--TE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHH
T ss_pred h--ee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHH
Confidence 9 99 889999999999999998877543211 000 0 00 111 11335899999999887
Q ss_pred HHHHH----------HHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCcCc------
Q 045279 355 AGNLA----------MKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSRRE------ 418 (702)
Q Consensus 355 a~~~a----------~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~~~------ 418 (702)
..... +-|.+...+.+...+.+.....+.|+ .+-+...+...-+.....
T Consensus 1485 ll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f---------------~~~l~~~~~~~f~~~~~~~~~~~~ 1549 (2695)
T 4akg_A 1485 VYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSF---------------EQLLYETVDKYLPNQDLGNISSTS 1549 (2695)
T ss_dssp HHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHH---------------HHHHHHHHHHHSCCSCCCCCSTTT
T ss_pred HHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCHHHHHHH---------------HHHHHHHHHHHhcccchhhhccCC
Confidence 65431 22333333333444443322222221 111111111111100000
Q ss_pred -cccccCCccccccCCcccchhhhHHHHH---------------HHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHH
Q 045279 419 -GFSAIPNVKWEDVGGLDYLRHEFDRYIV---------------RRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 419 -~~~~~~~~~~~~i~g~~~~k~~l~~~i~---------------~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~ 482 (702)
.+.......|.++.. +.+++.+.+.+. ..+.|.....|+...|..|+||+|++|+||++++|+
T Consensus 1550 ~~f~df~~~~Y~~v~~-~~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrL 1628 (2695)
T 4akg_A 1550 LLFSGLLSLDFKEVNK-TDLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRF 1628 (2695)
T ss_dssp CCEESSSSSSCEECCH-HHHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHH
T ss_pred ceeeecCCCcceecCH-HHHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHH
Confidence 001111123444432 344444444442 355677777787778899999999999999999999
Q ss_pred HHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHH-hCCCeEEEEeCcc-----------hhhcc-cCCC--CchHHH
Q 045279 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRAR-TCSPCILFFDEVD-----------ALTTK-RGKE--GGWVVE 547 (702)
Q Consensus 483 la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid-----------~l~~~-r~~~--~~~~~~ 547 (702)
.|..+++.++++..+.-.+ ..+....++.++.+|. ...|.|++|+|.+ .+... .-.+ ..+..+
T Consensus 1629 aa~i~~~~~fqi~~~~~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~ 1706 (2695)
T 4akg_A 1629 VAWLNGLKIVQPKIHRHSN--LSDFDMILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPDLFQGEEYD 1706 (2695)
T ss_dssp HHHHTTCEEECCCCCTTCC--HHHHHHHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTTTSCTHHHH
T ss_pred HHHHhCCeeEEEEeeCCCC--HHHHHHHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCCCCCHHHHH
Confidence 9999999999998765432 2345677899998885 4567788888743 22211 1111 123334
Q ss_pred HHHHHHHHhhh--CCC-CC-------------Cc-EEEEEecCCCC------ccCccccCCCccceEEEcCCCCHHHHHH
Q 045279 548 RLLNQLLIELD--GAD-KR-------------KG-VFVIGATNRPD------VMDRAVLRPGRFGKLLYVPLPTPDERGL 604 (702)
Q Consensus 548 ~~~~~ll~~l~--~~~-~~-------------~~-~~vI~atn~~~------~ld~a~~r~gRf~~~i~~~~p~~~~r~~ 604 (702)
.+++.+-.... |.. .+ .+ .+|++-+..-+ .--|++.+ ++ .+.-|..-..+.+..
T Consensus 1707 ~i~~~~r~~~~~~g~~~~t~~~l~~~Fi~rvr~NLHvVL~mSP~g~~fr~R~r~fPaLvn--~c-tIdWf~~Wp~eAL~~ 1783 (2695)
T 4akg_A 1707 KLLNNLRNKTRSLGLLLDTEQELYDWFVGEIAKNLHVVFTICDPTNNKSSAMISSPALFN--RC-IINWMGDWDTKTMSQ 1783 (2695)
T ss_dssp HHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHCEEEEEESCTTSHHHHHHHHSHHHHH--HS-EEEECCSCCHHHHHH
T ss_pred HHHHHhHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEEEECCCChHHHHHHHhChHhhc--ce-eEeecCCCCHHHHHH
Confidence 44444433221 221 11 12 23333332112 12366666 55 466677778889999
Q ss_pred HHHHHhccCCCC
Q 045279 605 ILEALARKKPID 616 (702)
Q Consensus 605 il~~~~~~~~~~ 616 (702)
+-..++.+....
T Consensus 1784 Va~~fl~~~~~~ 1795 (2695)
T 4akg_A 1784 VANNMVDVIPME 1795 (2695)
T ss_dssp HHHHHSCSCCCC
T ss_pred HHHHHhhccCcc
Confidence 999998876543
No 66
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.81 E-value=1.9e-19 Score=188.42 Aligned_cols=246 Identities=22% Similarity=0.275 Sum_probs=170.4
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHc-CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcCc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEF-GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGE 506 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g~ 506 (702)
+.++|++.+++.+...+..+.......... ....+.+++|+||||||||++|+++|+.++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458899999999888776643332211111 1135678999999999999999999999999999999999876 56664
Q ss_pred h-HHHHHHHHHHH-----HhCCCeEEEEeCcchhhcccCCCCchHH-HHHHHHHHHhhhCCC--------CCCcEEEEEe
Q 045279 507 S-ELAVRTLFSRA-----RTCSPCILFFDEVDALTTKRGKEGGWVV-ERLLNQLLIELDGAD--------KRKGVFVIGA 571 (702)
Q Consensus 507 ~-~~~~~~~f~~a-----~~~~~~vl~iDEid~l~~~r~~~~~~~~-~~~~~~ll~~l~~~~--------~~~~~~vI~a 571 (702)
. ...++.++..+ ....++||||||+|.+............ ..+++.|+..|++.. ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 3 34566666532 1124689999999999977654433332 345788888888642 2346788888
Q ss_pred ----cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHH----H-------hccCCC---CCCCCHHHHhhhhc----
Q 045279 572 ----TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEA----L-------ARKKPI---DDSVDLHTIAQSKF---- 629 (702)
Q Consensus 572 ----tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~----~-------~~~~~~---~~~~~~~~la~~~~---- 629 (702)
++.+..+++++++ ||+..+.|++|+.+++..|++. + +..... -.+..++.++....
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4567889999998 9998899999999999999983 1 112221 12233555663321
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 630 -CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 630 -~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
+...+.+.+.++|+.++..+.-+... .......|+.+|+..|+....
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~~~~~~~~-----~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDKISFSASD-----MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHHHHHHGGG-----CTTCEEEECHHHHHHHTCSSS
T ss_pred cccccCcHHHHHHHHHHHHhhhcCCcc-----ccCCEEEEeeHHHHHHHHhhh
Confidence 12567799999999887655433321 111233599999999998764
No 67
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=8.1e-20 Score=195.85 Aligned_cols=245 Identities=19% Similarity=0.262 Sum_probs=170.6
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHH-cC-CCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccccc-CcCc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEE-FG-VDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNK-YVGE 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~-~~-~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~-~~g~ 506 (702)
.++|++.+++.+...+............ .. ..++.++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3789999999888877544322211100 01 1256889999999999999999999999999999999998754 7777
Q ss_pred h-HHHHHHHHHHH----HhCCCeEEEEeCcchhhcccCCCC---chHHHHHHHHHHHhhhCCC-----------------
Q 045279 507 S-ELAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKEG---GWVVERLLNQLLIELDGAD----------------- 561 (702)
Q Consensus 507 ~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~~---~~~~~~~~~~ll~~l~~~~----------------- 561 (702)
. ...++.+|..+ ....++||||||+|.+.+.+.... ......+++.||..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55567777665 334678999999999998765432 1233458999999999531
Q ss_pred --CCCcEEEEEecCCC----------Cc-----------------------------------cCccccCCCccceEEEc
Q 045279 562 --KRKGVFVIGATNRP----------DV-----------------------------------MDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 562 --~~~~~~vI~atn~~----------~~-----------------------------------ld~a~~r~gRf~~~i~~ 594 (702)
...++++|+++|.. .. ++|+|++ ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 22344555555532 11 6788887 99999999
Q ss_pred CCCCHHHHHHHHHH----Hhc-------cCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 045279 595 PLPTPDERGLILEA----LAR-------KKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSS 660 (702)
Q Consensus 595 ~~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~ 660 (702)
++|+.+++..|+.. +++ ..... .+..++.++...+...+++++|+++++.++..++.+... .
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~----~ 329 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPS----M 329 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTT----C
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccc----c
Confidence 99999999999876 222 11221 222355666544556778899999999999888776532 1
Q ss_pred CCCCCccccHHHHHHHHhhc
Q 045279 661 SDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 661 ~~~~~~~i~~~d~~~al~~~ 680 (702)
.......|+.+++++.+...
T Consensus 330 ~~~~~~~I~~~~v~~~~~~~ 349 (363)
T 3hws_A 330 EDVEKVVIDESVIDGQSEPL 349 (363)
T ss_dssp CCSEEEECHHHHTTCCSCCE
T ss_pred cCCceeEEcHHHHhCcCCce
Confidence 22245578888887766543
No 68
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.80 E-value=8.3e-20 Score=223.04 Aligned_cols=151 Identities=23% Similarity=0.274 Sum_probs=112.3
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhC----------hHHHHH------cCCC----------CCcc--eEEEcCCCCC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKF----------PEEYEE------FGVD----------LETG--FLLYGPPGCG 475 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~----------~~~~~~------~~~~----------~~~~--~ll~Gp~GtG 475 (702)
+.+.|++++|++++|+.+.+.+.+++++ ++.+.. .|.. +|+| +++|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4589999999999999999999999854 445555 2222 3444 9999999999
Q ss_pred hhHHHHHHHHHh---CCeEEEEeccccc------------ccCcCc----hHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 476 KTLIAKAVANEA---GANFIHIKGPELL------------NKYVGE----SELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 476 KT~la~~la~~~---~~~~~~i~~~~l~------------~~~~g~----~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
||++|++++.+. +.+.+.|+..+.. ++|+++ +++.++.+|.+|+...||+||+||+++|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999866 5555566655543 667888 899999999999999999999999999998
Q ss_pred cc---CCC---CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 537 KR---GKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 537 ~r---~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
.+ +.. ......++++++|.+|++.....+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 83 221 2256688999999999987777788887 77763
No 69
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.79 E-value=2e-20 Score=201.47 Aligned_cols=169 Identities=18% Similarity=0.202 Sum_probs=84.2
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCC-CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc-cCcCc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGV-DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN-KYVGE 506 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~g~ 506 (702)
++|+|++.+|+.+..++..++++...+..+.. .++.++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 46899999999999888777666555444333 25689999999999999999999999999999999999988 59995
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe-cCCCCccCccccC
Q 045279 507 -SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA-TNRPDVMDRAVLR 584 (702)
Q Consensus 507 -~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a-tn~~~~ld~a~~r 584 (702)
.+..++.+|..+.. ++++||++.+... ......++++++||..||+......+ +++ ||+++.||++++|
T Consensus 95 d~e~~lr~lf~~a~~----~~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMK----LVRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHH----HHHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHh----cchhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 89999999999876 4468998876532 23345589999999999998765554 444 9999999999999
Q ss_pred CCccceEEEcCCCCHH-HHHHHH
Q 045279 585 PGRFGKLLYVPLPTPD-ERGLIL 606 (702)
Q Consensus 585 ~gRf~~~i~~~~p~~~-~r~~il 606 (702)
|||||+.|++++|+.. .|.+|+
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------
T ss_pred CCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999987 677765
No 70
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.78 E-value=6e-18 Score=179.51 Aligned_cols=216 Identities=19% Similarity=0.231 Sum_probs=161.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+..|++++|.+.+++.+...+..... ...++.++||+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--- 92 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE--- 92 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc---
Confidence 345789999999999988877655421 224567899999999999999999999999999999987653
Q ss_pred cCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC----------------CCcEE
Q 045279 504 VGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK----------------RKGVF 567 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~----------------~~~~~ 567 (702)
....+..++.. ...+++|||||++.+. ...++.|+..|+.... ..+++
T Consensus 93 ---~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 93 ---KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp ---SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred ---chhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 22233344432 2467999999999998 6777888887775321 12489
Q ss_pred EEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 568 VIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 568 vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
+|++||....+++++++ ||+..+.+++|+.+++..+++.++.......+ ..++.++. .+ .-+.+.+.++++.+.
T Consensus 157 ~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~--~~-~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK--RS-RSTPRIALRLLKRVR 231 (338)
T ss_dssp EEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH--TT-TTCHHHHHHHHHHHH
T ss_pred EEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HH-CcCHHHHHHHHHHHH
Confidence 99999999999999999 99999999999999999999999887664322 23445552 23 335578888888776
Q ss_pred HHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 647 MAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 647 ~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
..+.... ...|+.+++..++.....
T Consensus 232 ~~a~~~~-----------~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 232 DFADVND-----------EEIITEKRANEALNSLGV 256 (338)
T ss_dssp HHHHHTT-----------CSEECHHHHHHHHHHHTC
T ss_pred HHHHhhc-----------CCccCHHHHHHHHHHhCC
Confidence 5554321 126888888888876543
No 71
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=1.8e-17 Score=175.82 Aligned_cols=208 Identities=22% Similarity=0.292 Sum_probs=146.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhccccc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSG 200 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g 200 (702)
.+|++++|.+.+++.+...+..... ...+..++||+||||||||++|+++++.++.+|+.+++..+.
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~----- 92 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE----- 92 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-----
Confidence 3899999999999999988754322 123456899999999999999999999999999999998753
Q ss_pred ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 201 ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 201 ~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
....+...+.. ...+++|||||||.+... ....|+..+++.......+............+ ++++
T Consensus 93 -~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-----------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 157 (338)
T 3pfi_A 93 -KSGDLAAILTN--LSEGDILFIDEIHRLSPA-----------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTL 157 (338)
T ss_dssp -SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCC---------CCCCCCCCC-CCEE
T ss_pred -chhHHHHHHHh--ccCCCEEEEechhhcCHH-----------HHHHHHHHHHhccchhhcccCccccceecCCC-CeEE
Confidence 22333344433 245679999999988632 34456777765432111111111111111122 4899
Q ss_pred EEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 281 IGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 281 I~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
|++||....+++++++ ||+..+.+++|+.+++..++...+........ ..+..++..+.| +.+.+.+++..+...+
T Consensus 158 i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHH
T ss_pred EEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999988876554322 235667775555 6678888877765443
No 72
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.76 E-value=5e-18 Score=174.37 Aligned_cols=201 Identities=23% Similarity=0.289 Sum_probs=140.5
Q ss_pred HHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCch----HHHHHHHHHHHHhCCCeEEEEeC
Q 045279 455 YEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGES----ELAVRTLFSRARTCSPCILFFDE 530 (702)
Q Consensus 455 ~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~----~~~~~~~f~~a~~~~~~vl~iDE 530 (702)
+...+..++.++||+||||||||++|+++|..++.+|+.+++++. +.|.. ...++.+|..+....++||||||
T Consensus 56 l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDE 132 (272)
T 1d2n_A 56 TKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDD 132 (272)
T ss_dssp HHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECC
T ss_pred HhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 334456778899999999999999999999999999999988763 33433 35678889988877899999999
Q ss_pred cchhhcccCCCCchHHHHHHHHHHHhhhCCC-CCCcEEEEEecCCCCccCc-cccCCCccceEEEcCCCCH-HHHHHHHH
Q 045279 531 VDALTTKRGKEGGWVVERLLNQLLIELDGAD-KRKGVFVIGATNRPDVMDR-AVLRPGRFGKLLYVPLPTP-DERGLILE 607 (702)
Q Consensus 531 id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~atn~~~~ld~-a~~r~gRf~~~i~~~~p~~-~~r~~il~ 607 (702)
+|.+.+.+.... .....+++.|...+++.. ...+++||+|||.++.+++ .+.+ ||+..+.+|+++. ++...++.
T Consensus 133 id~l~~~~~~~~-~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~ 209 (272)
T 1d2n_A 133 IERLLDYVPIGP-RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALE 209 (272)
T ss_dssp HHHHTTCBTTTT-BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHH
T ss_pred hhhhhccCCCCh-hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHH
Confidence 999976554222 122566777777777653 3457889999999999988 4555 9999999988776 44444444
Q ss_pred HHhccCCCCCCCCHHHHhhhhcCCCC----CHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCC
Q 045279 608 ALARKKPIDDSVDLHTIAQSKFCENL----SGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPS 683 (702)
Q Consensus 608 ~~~~~~~~~~~~~~~~la~~~~~~~~----sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~ 683 (702)
. ...+ .+.++..++ ..+.|| +-+++.++++.|...+ .....++|..++.....+
T Consensus 210 ~---~~~~-~~~~~~~l~--~~~~g~~~~g~ir~l~~~l~~a~~~~----------------~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 210 L---LGNF-KDKERTTIA--QQVKGKKVWIGIKKLLMLIEMSLQMD----------------PEYRVRKFLALLREEGAS 267 (272)
T ss_dssp H---HTCS-CHHHHHHHH--HHHTTSEEEECHHHHHHHHHHHTTSC----------------GGGHHHHHHHHHHHTSCC
T ss_pred h---cCCC-CHHHHHHHH--HHhcCCCccccHHHHHHHHHHHhhhc----------------hHHHHHHHHHHHHHcCCc
Confidence 3 2222 344566677 445666 4456666655443211 135567788887776543
No 73
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.76 E-value=1.1e-17 Score=179.70 Aligned_cols=203 Identities=21% Similarity=0.248 Sum_probs=140.8
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechhhh
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--PFYKISATEVV 195 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~l~ 195 (702)
.+..+|++++|.+.+++.+...+.. +. .+..++.++||+||||||||++|+++|+.++. +++.+++..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~-~~-------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEM-IR-------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-HH-------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHH-HH-------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 3444699999999999886644322 21 14445689999999999999999999999974 78888876643
Q ss_pred ccc-------------------------------------------------ccccHHHHHHHHHHHHh-----h----C
Q 045279 196 SGV-------------------------------------------------SGASEENIRDLFSKAYR-----T----A 217 (702)
Q Consensus 196 ~~~-------------------------------------------------~g~~~~~~~~~f~~a~~-----~----~ 217 (702)
..+ .|.....++..|..+.. + .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 322 22223445555555432 1 1
Q ss_pred CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEec-----------CC
Q 045279 218 PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGAT-----------NR 286 (702)
Q Consensus 218 p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~at-----------n~ 286 (702)
|+||||||+|.+... ....|+..+++. +..++++++. |.
T Consensus 190 ~~vl~IDEi~~l~~~-----------~~~~L~~~le~~-------------------~~~~~ii~t~~~~~~i~~t~~~~ 239 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-----------SFSFLNRALESD-------------------MAPVLIMATNRGITRIRGTSYQS 239 (368)
T ss_dssp BCEEEEESGGGSBHH-----------HHHHHHHHTTCT-------------------TCCEEEEEESCSEEECBTSSCEE
T ss_pred CceEEEhhccccChH-----------HHHHHHHHhhCc-------------------CCCeeeeecccceeeeeccCCCC
Confidence 679999999988632 334566666542 1224444443 34
Q ss_pred CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHHHHHHHHHHHH
Q 045279 287 PDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKAGNLAMK 361 (702)
Q Consensus 287 ~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~ 361 (702)
+..+++++++ ||.. +.|++|+.+++.+|+...+........ ..+..+++.+.+.+++++.++++.|...+..
T Consensus 240 ~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 240 PHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp ETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 7789999999 9954 899999999999999988776544322 3366677777757899999999988776643
No 74
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=7.5e-18 Score=184.14 Aligned_cols=226 Identities=22% Similarity=0.247 Sum_probs=155.7
Q ss_pred CccccccCCcccch---hhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccc
Q 045279 425 NVKWEDVGGLDYLR---HEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLN 501 (702)
Q Consensus 425 ~~~~~~i~g~~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 501 (702)
...|++++|++.++ ..+...+... ...++||+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT--- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT---
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc---
Confidence 45788999999887 5555544321 2268999999999999999999999999999998643
Q ss_pred cCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec--CCC
Q 045279 502 KYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT--NRP 575 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at--n~~ 575 (702)
.+...++.++..+.. ..++||||||+|.+. ...++.|+..++. ..+++|++| |..
T Consensus 86 ----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~-----------~~~q~~LL~~le~----~~v~lI~att~n~~ 146 (447)
T 3pvs_A 86 ----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFN-----------KSQQDAFLPHIED----GTITFIGATTENPS 146 (447)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESSCGG
T ss_pred ----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhC-----------HHHHHHHHHHHhc----CceEEEecCCCCcc
Confidence 234456677766652 468999999999997 4456677777774 346677666 445
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC--------CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID--------DSVDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~--------~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
..+++++++ ||. ++.|++|+.+++..+++..+...... .+..++.++. ++ +-+.+.+.++++.++.
T Consensus 147 ~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~--~~-~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 147 FELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAE--LV-NGDARRALNTLEMMAD 220 (447)
T ss_dssp GSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHH--HH-CSCHHHHHHHHHHHHH
T ss_pred cccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHH--HC-CCCHHHHHHHHHHHHH
Confidence 689999999 886 78899999999999999998762211 1122445552 22 2245666666666553
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 700 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~ 700 (702)
.+... ......|+.+++.+++++........+..+|+.+++..+
T Consensus 221 ~a~~~---------~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~k 264 (447)
T 3pvs_A 221 MAEVD---------DSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHK 264 (447)
T ss_dssp HSCBC---------TTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHH
T ss_pred hcccc---------cCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHH
Confidence 32100 012237999999999999888787777888888887665
No 75
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.75 E-value=1e-17 Score=175.14 Aligned_cols=225 Identities=25% Similarity=0.315 Sum_probs=150.4
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCccccc-CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-ccccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWL-GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-GVSGA 201 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-~~~g~ 201 (702)
++|+|++.+++.+...+..++..+.+...+ ....+.++||+||||||||++|+++++.++.+++.++++.+.. ++.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 458999999999998886655444332211 1235678999999999999999999999999999999999876 55554
Q ss_pred c-HHHHHHHHHHH-----HhhCCceEEechhhHhhhcchhhhH-HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 202 S-EENIRDLFSKA-----YRTAPSIVFIDEIDAIASKRENLQR-EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 202 ~-~~~~~~~f~~a-----~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
. ...+..++..+ ....++||||||+|.+......... .....+...|+..+++.......+ ...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~---------~~~ 165 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG---------MVK 165 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE---------EEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc---------ccc
Confidence 3 33455555532 1123569999999999876532222 222345667888887532111000 001
Q ss_pred CCeEEEEEec----CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh----c---------CcccC-CcccHHHH
Q 045279 275 PGYVLVIGAT----NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT----R---------NLRVE-GSFDLVKI 336 (702)
Q Consensus 275 ~~~v~vI~at----n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~----~---------~~~~~-~~~~~~~l 336 (702)
..++++|+++ +.+..++|++++ ||+..+.|++|+.+++.+|++... . ..... ....+..+
T Consensus 166 ~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 243 (310)
T 1ofh_A 166 TDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKI 243 (310)
T ss_dssp CTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHH
T ss_pred CCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHH
Confidence 2347888884 567789999999 999889999999999999998421 1 11111 11224444
Q ss_pred HhhC-------CCCCHHHHHHHHHHHHHHH
Q 045279 337 ARST-------PGFVGADLAALANKAGNLA 359 (702)
Q Consensus 337 a~~t-------~g~~~~dl~~l~~~a~~~a 359 (702)
+..+ .+.+.+.+.++++.++..+
T Consensus 244 ~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 244 AEAAFRVNEKTENIGARRLHTVMERLMDKI 273 (310)
T ss_dssp HHHHHHHHHHSCCCTTHHHHHHHHHHSHHH
T ss_pred HHHhhhhcccccccCcHHHHHHHHHHHHhh
Confidence 4443 3567888888888776544
No 76
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.74 E-value=9.2e-18 Score=180.74 Aligned_cols=245 Identities=20% Similarity=0.202 Sum_probs=156.7
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHH-----------------HcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeE
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYE-----------------EFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANF 491 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~-----------------~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~ 491 (702)
+.++|++.+++.+...+...+....... .....++.++||+||||||||++|+++|+.++.+|
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3578999999999887754333322111 11234567899999999999999999999999999
Q ss_pred EEEeccccc-ccCcCch-HHHHHHHHHHH----HhCCCeEEEEeCcchhhcccCCCCc---hHHHHHHHHHHHhhhCCC-
Q 045279 492 IHIKGPELL-NKYVGES-ELAVRTLFSRA----RTCSPCILFFDEVDALTTKRGKEGG---WVVERLLNQLLIELDGAD- 561 (702)
Q Consensus 492 ~~i~~~~l~-~~~~g~~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~~~---~~~~~~~~~ll~~l~~~~- 561 (702)
+.++++.+. ..|+|.. +..+..++..+ ....++||||||+|.+...+..... .....+++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998876 3466653 34455555432 2336799999999999876432211 111347889999998641
Q ss_pred ------------------CCCcEEEEEecCCC-----------------------------------------CccCccc
Q 045279 562 ------------------KRKGVFVIGATNRP-----------------------------------------DVMDRAV 582 (702)
Q Consensus 562 ------------------~~~~~~vI~atn~~-----------------------------------------~~ld~a~ 582 (702)
...++++|++||.. ..+.|++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12556778887621 1245666
Q ss_pred cCCCccceEEEcCCCCHHHHHHHHHH----Hhc-------cCCCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHH
Q 045279 583 LRPGRFGKLLYVPLPTPDERGLILEA----LAR-------KKPID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMA 648 (702)
Q Consensus 583 ~r~gRf~~~i~~~~p~~~~r~~il~~----~~~-------~~~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~ 648 (702)
++ ||+.++.|++++.++...|+.. +++ ..... .+..++.++........+.+.|+++|..++..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 66 9999999999999999998862 211 11111 12234566654343456789999999999988
Q ss_pred HHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 649 ALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 649 a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
++.+.... ......|+.+++..+...+
T Consensus 339 ~~~~~~~~-----~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 339 IMFDLPKL-----KGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHHTGGGG-----TTSEEEECHHHHTTSSCCE
T ss_pred HHhhccCC-----CCCEEEEeHHHhcCCCCce
Confidence 87765432 1233468999988765443
No 77
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.74 E-value=5.7e-17 Score=170.80 Aligned_cols=215 Identities=21% Similarity=0.274 Sum_probs=153.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
+..|++++|.+..++.+...+.... . ....+.+++|+||||||||++|+++++.++.+++.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 4478899999998888877665431 1 1134578999999999999999999999999999999877532
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEE
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFV 568 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~v 568 (702)
...+...|..+ ...+++|||||++.+. ...+..|+..++... ...++++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~-----------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLS-----------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCC-----------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccc-----------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 22233333321 1467899999999988 556666776666431 1135789
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
|++||.+..+++++.+ ||+.++.+++|+.+++..++..++...+...+ ..++.++ .++.| +.+.+.++++.+..
T Consensus 142 i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~--~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 142 IGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIG--RRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp EEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH--HHSCS-CHHHHHHHHHHHTT
T ss_pred EEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHccC-CHHHHHHHHHHHHH
Confidence 9999999999999988 99889999999999999999999887654432 2345555 33434 45778888776653
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.+... ....|+.+++..++....
T Consensus 217 ~a~~~-----------~~~~i~~~~~~~~~~~~~ 239 (324)
T 1hqc_A 217 FAQVA-----------GEEVITRERALEALAALG 239 (324)
T ss_dssp TSTTT-----------SCSCCCHHHHHHHHHHHT
T ss_pred HHHHh-----------cCCCCCHHHHHHHHHHhc
Confidence 33211 122578888888776654
No 78
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.74 E-value=2.1e-18 Score=193.63 Aligned_cols=219 Identities=24% Similarity=0.249 Sum_probs=143.7
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc-----
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS----- 196 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~----- 196 (702)
.+++++|++++++.+.+.+......... ++.+++|+||||||||++|++||+.++.++..+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~~-------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKSL-------KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSSC-------CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 4577999999999998776554333222 5678999999999999999999999999999999877543
Q ss_pred ----ccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCCCC
Q 045279 197 ----GVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR--LVQPGDQKSKSDA 270 (702)
Q Consensus 197 ----~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~~~~~~~~~~~ 270 (702)
.+.|.....+...|..+....| |+||||||.+....+. .....|+..|+.... +...+... .
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~---~- 219 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEE---T- 219 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCC---C-
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCe---e-
Confidence 3556666666667777654555 9999999999865432 123446666654321 11110000 0
Q ss_pred CCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-----cccC------CcccHHHHHh-
Q 045279 271 SDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-----LRVE------GSFDLVKIAR- 338 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-----~~~~------~~~~~~~la~- 338 (702)
....+++||+|||.++.++|+|++ || .+|.|+.|+.+++.+|+..++.. .... ....+..++.
T Consensus 220 --~~~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 220 --FDLSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp --CBCSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred --ecccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 011458999999999999999999 99 57999999999999999876522 1111 1122444444
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045279 339 STPGFVGADLAALANKAGNLAMKRII 364 (702)
Q Consensus 339 ~t~g~~~~dl~~l~~~a~~~a~~r~~ 364 (702)
.+.....++|++.+..++..+..+.+
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~ 320 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIV 320 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHH
Confidence 34346778898888888777666554
No 79
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=3.7e-17 Score=167.81 Aligned_cols=205 Identities=21% Similarity=0.297 Sum_probs=136.1
Q ss_pred cccccCHHHHHHHHHHH---hhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 123 FQDLGGMESVLEELKME---VIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~---v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
...++|.++..+.+... +...+. ..+..++.++||+||||||||++|+++|+.++.+++.+++.+...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~------~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTK------NSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHH------HCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHh------ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCc
Confidence 35677877776666653 212121 123456789999999999999999999999999999998876432221
Q ss_pred -cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeE
Q 045279 200 -GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYV 278 (702)
Q Consensus 200 -g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v 278 (702)
+.....+..+|..+....+++|||||||.+.+..... ......++..|...++.... .+..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~----------------~~~~~ 168 (272)
T 1d2n_A 106 ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPP----------------QGRKL 168 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCS----------------TTCEE
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccC----------------CCCCE
Confidence 2223567788888877778999999999996543221 11223445555555443211 23458
Q ss_pred EEEEecCCCCCCCc-cccCCCCcceEEEeCCCCH-HHHHHHHHHhhcCcccCCcccHHHHHhhCCCC----CHHHHHHHH
Q 045279 279 LVIGATNRPDAVDP-ALRRPGRFDREIVLGVPDE-NARVQILSVLTRNLRVEGSFDLVKIARSTPGF----VGADLAALA 352 (702)
Q Consensus 279 ~vI~atn~~~~ld~-al~r~~Rf~~~i~~~~p~~-~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~----~~~dl~~l~ 352 (702)
+||+|||.++.+++ .+++ ||...+.+|+++. ++...++.. ...+ ....+..+++.+.|| +.+++.+++
T Consensus 169 ~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~---~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALEL---LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHH---HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHh---cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 99999999988888 6777 9988888876665 444444433 2222 234577788888887 567777766
Q ss_pred HHHH
Q 045279 353 NKAG 356 (702)
Q Consensus 353 ~~a~ 356 (702)
+.|.
T Consensus 243 ~~a~ 246 (272)
T 1d2n_A 243 EMSL 246 (272)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6553
No 80
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.71 E-value=2.1e-17 Score=173.07 Aligned_cols=209 Identities=22% Similarity=0.257 Sum_probs=148.7
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc---
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK--- 502 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~--- 502 (702)
..+.|.+.+++.+...+....... .....+..+++|+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~----~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL----KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC----SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC----CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 457888888888877765542110 0011234579999999999999999999988 567999998876542
Q ss_pred ---------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCC
Q 045279 503 ---------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRK 564 (702)
Q Consensus 503 ---------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~ 564 (702)
|+|.... ..+.......+++||||||+|.+. ..+++.|+..|+... ...
T Consensus 93 ~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~-----------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAH-----------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSC-----------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcC-----------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 1121110 123344445567999999999998 788899998887532 113
Q ss_pred cEEEEEecCC--------------------------CCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC-----
Q 045279 565 GVFVIGATNR--------------------------PDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK----- 613 (702)
Q Consensus 565 ~~~vI~atn~--------------------------~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~----- 613 (702)
++++|+|||. ...+++++++ ||+.++.|++|+.+++..|++.++.+.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~ 237 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLA 237 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHH
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7889999998 4578888888 999999999999999999999877652
Q ss_pred --CCC---CCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 045279 614 --PID---DSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLIS 656 (702)
Q Consensus 614 --~~~---~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~ 656 (702)
... .+..++.++...+...++.++|+++|+.++..++.+....
T Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 238 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp TTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred hCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 111 1223455553333235677999999999999888877654
No 81
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.70 E-value=7.6e-17 Score=172.67 Aligned_cols=236 Identities=25% Similarity=0.272 Sum_probs=151.1
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCc--ccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc-cccc
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQL--PQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG-VSGA 201 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~--~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~-~~g~ 201 (702)
.|+|++.+++.+...+......... .......++.++||+||||||||++|++||+.++.+|+.++++++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 3699999999999877433221110 000112357899999999999999999999999999999999998754 6666
Q ss_pred c-HHHHHHHHHHH----HhhCCceEEechhhHhhhcchhh---hHHHHHHHHHHHHHHHhhhccccCC-CCCC-CCCCCC
Q 045279 202 S-EENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENL---QREMERRIVTQLMTCMDESHRLVQP-GDQK-SKSDAS 271 (702)
Q Consensus 202 ~-~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~-~~~~-~~~~~~ 271 (702)
. ...+..+|..+ ....++||||||||.+...+... .+.....+...|+..|++....+.. ++.. ......
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 44556666654 33456799999999998765332 2233355888999999843221111 1110 011111
Q ss_pred CCCCCeEEEEEecCCC----------CC-----------------------------------CCccccCCCCcceEEEe
Q 045279 272 DSKPGYVLVIGATNRP----------DA-----------------------------------VDPALRRPGRFDREIVL 306 (702)
Q Consensus 272 ~~~~~~v~vI~atn~~----------~~-----------------------------------ld~al~r~~Rf~~~i~~ 306 (702)
.-...++++|+++|.. .. +.|+|.+ ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 1123346677776642 11 6888888 99999999
Q ss_pred CCCCHHHHHHHHHH----hhcCc-------cc--CCc-ccHHHHHh--hCCCCCHHHHHHHHHHHHHHHHHH
Q 045279 307 GVPDENARVQILSV----LTRNL-------RV--EGS-FDLVKIAR--STPGFVGADLAALANKAGNLAMKR 362 (702)
Q Consensus 307 ~~p~~~er~~Il~~----~~~~~-------~~--~~~-~~~~~la~--~t~g~~~~dl~~l~~~a~~~a~~r 362 (702)
.+|+.+++.+|+.. ++..+ .. ... ..+..++. ....+..|+|++++.+++..++.+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999999986 22211 11 111 12444553 335566789999988887765543
No 82
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.70 E-value=2.6e-17 Score=181.73 Aligned_cols=182 Identities=21% Similarity=0.336 Sum_probs=127.9
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEe
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKIS 190 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~ 190 (702)
-+|++|+|.+..++.+.+.+. ....+++||+||||||||++|+++|+.+ +.+++.++
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~-------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~ 243 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLS-------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLD 243 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHH-------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-
T ss_pred CCCCCccCcHHHHHHHHHHHh-------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 379999999999999987762 2446789999999999999999999997 77899998
Q ss_pred chhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCC
Q 045279 191 ATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDA 270 (702)
Q Consensus 191 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~ 270 (702)
++ ..+.|.++..++.+|..+....+.||||| ... ...+.|+..++
T Consensus 244 ~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~~---------~a~~~L~~~L~----------------- 288 (468)
T 3pxg_A 244 MG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AAI---------DASNILKPSLA----------------- 288 (468)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEEC------C-----------------CCCTT-----------------
T ss_pred CC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cch---------hHHHHHHHhhc-----------------
Confidence 88 56778888888999999988888999999 000 01112222222
Q ss_pred CCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-----cHHHHHhhC
Q 045279 271 SDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-----DLVKIARST 340 (702)
Q Consensus 271 ~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-----~~~~la~~t 340 (702)
.+.++||++||..+ .+++++++ ||. .|.|+.|+.+++..|++.++..+...+.. .+..++..+
T Consensus 289 ----~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s 361 (468)
T 3pxg_A 289 ----RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLS 361 (468)
T ss_dssp ----SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHH
T ss_pred ----CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 34589999999987 79999999 995 69999999999999999888775432222 233344332
Q ss_pred -----CCCCHHHHHHHHHHHHH
Q 045279 341 -----PGFVGADLAALANKAGN 357 (702)
Q Consensus 341 -----~g~~~~dl~~l~~~a~~ 357 (702)
..+.+.....+++.|..
T Consensus 362 ~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 362 DRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHSSCCSCTTHHHHHHHHHHHH
T ss_pred HHHhccCcCCcHHHHHHHHHHH
Confidence 33445566677776653
No 83
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.69 E-value=3.9e-17 Score=157.64 Aligned_cols=157 Identities=22% Similarity=0.367 Sum_probs=115.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
+|++++|.++.++++.+.+. ...+.+++|+||||||||++++++++.+ +.+++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~-------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQ-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred cccccccchHHHHHHHHHHh-------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 79999999999999987662 2345789999999999999999999986 678899999
Q ss_pred hhhhc--ccccccHHHHHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVS--GVSGASEENIRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~--~~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
..+.. .+.+.....+..++..+.. ..+.+|||||+|.+......... ..+...+...++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~--------------- 148 (195)
T 1jbk_A 87 GALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALA--------------- 148 (195)
T ss_dssp HHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHH---------------
T ss_pred HHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhc---------------
Confidence 88763 3455566667777776644 45779999999999754321100 111222333332
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHH
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQIL 318 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il 318 (702)
.+++.+|++||.+. .+++++++ ||. .+.++.|+.+++.+|+
T Consensus 149 ------~~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 149 ------RGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ------TTSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred ------cCCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 12377888888865 78999999 996 6999999999998875
No 84
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.68 E-value=8.7e-16 Score=161.69 Aligned_cols=206 Identities=24% Similarity=0.307 Sum_probs=141.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.+|++++|.+.+++.+...+..... ......++||+||||||||++|+++++.++.+++.+++..+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKA--------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHH--------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHc--------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 33899999999999999877743211 1134578999999999999999999999999999999877532
Q ss_pred cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEE
Q 045279 200 GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVL 279 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~ 279 (702)
...+...|..+ ...+++|||||+|.+... ....|+..++........+......... ....+++
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~-~~~~~~~ 140 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIR-LELPRFT 140 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEE-EECCCCE
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccc-cCCCCEE
Confidence 22333333321 135679999999988632 2334666666543211111100000000 0112488
Q ss_pred EEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 280 VIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 280 vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
+|++||.+..+++++.+ ||..++.++.|+.+++.+++..++........ ..+..++..+.| +++.+.+++..+
T Consensus 141 ~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp EEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred EEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 99999999999999999 99888999999999999999988876554332 235667777765 557777776654
No 85
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.66 E-value=4.4e-16 Score=165.78 Aligned_cols=220 Identities=17% Similarity=0.213 Sum_probs=136.5
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE----Eecccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIH----IKGPEL 499 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~----i~~~~l 499 (702)
+...|+++.|.+.++..+..... .....++||+||||||||++|++++..++..... +++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~-------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAV-------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH-------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhh-------------CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 56689999999887664322111 0124569999999999999999999988631100 111110
Q ss_pred ---------------------cccCcCchHHHH------HHHHHHH---------HhCCCeEEEEeCcchhhcccCCCCc
Q 045279 500 ---------------------LNKYVGESELAV------RTLFSRA---------RTCSPCILFFDEVDALTTKRGKEGG 543 (702)
Q Consensus 500 ---------------------~~~~~g~~~~~~------~~~f~~a---------~~~~~~vl~iDEid~l~~~r~~~~~ 543 (702)
.....+.+...+ ...+... ....++||||||++.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-------- 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-------- 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC--------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC--------
Confidence 000111112111 1122111 11147899999999998
Q ss_pred hHHHHHHHHHHHhhhCCC-----------CCCcEEEEEecCCCC-ccCccccCCCccceEEEcCCC-CHHHHHHHHHHHh
Q 045279 544 WVVERLLNQLLIELDGAD-----------KRKGVFVIGATNRPD-VMDRAVLRPGRFGKLLYVPLP-TPDERGLILEALA 610 (702)
Q Consensus 544 ~~~~~~~~~ll~~l~~~~-----------~~~~~~vI~atn~~~-~ld~a~~r~gRf~~~i~~~~p-~~~~r~~il~~~~ 610 (702)
...++.|+..|+... ...++++|+|||..+ .+++++++ ||+..+.+++| +.+++..|++..+
T Consensus 158 ---~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 158 ---DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp ---HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 667778887776420 113789999999754 89999999 99988999999 5777778886531
Q ss_pred c-----------------------------cCCCC-CCCCHHHHhhhhcCCCC-CHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045279 611 R-----------------------------KKPID-DSVDLHTIAQSKFCENL-SGADLAAMMNEAAMAALEDKLISSKS 659 (702)
Q Consensus 611 ~-----------------------------~~~~~-~~~~~~~la~~~~~~~~-sg~dl~~~~~~a~~~a~~~~~~~~~~ 659 (702)
. ...+. .+..++.++......+. +.+.+.++++.|...|..+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~----- 307 (350)
T 1g8p_A 233 TYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGA----- 307 (350)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTC-----
T ss_pred hcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC-----
Confidence 1 01111 12223444432222233 568888888888766654432
Q ss_pred CCCCCCccccHHHHHHHHhhc
Q 045279 660 SSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 660 ~~~~~~~~i~~~d~~~al~~~ 680 (702)
..|+.+|+..|+..+
T Consensus 308 ------~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 308 ------TAVGRDHLKRVATMA 322 (350)
T ss_dssp ------SBCCHHHHHHHHHHH
T ss_pred ------CcCCHHHHHHHHHHH
Confidence 269999999998865
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.66 E-value=6.3e-16 Score=189.12 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=98.7
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccC----------CCcccc------cC------------CCCCceEEEECCCCC
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYH----------PQLPQW------LG------------VRPMAGILLYGPPGC 169 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~----------~~~~~~------~~------------~~~~~~vLl~GppGt 169 (702)
...++|+++.|++++|+.+.+.+.+|+.+ ++.++. .| ++.++.+|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 44579999999999999999999988843 445544 22 445666999999999
Q ss_pred CHHHHHHHHHHHh---CCCeEEEechhhh------------cccccc----cHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 170 GKTKLAHAIANET---GVPFYKISATEVV------------SGVSGA----SEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 170 GKT~la~~la~~l---~~~~~~i~~~~l~------------~~~~g~----~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
|||+||++++.+. +.+.+.|+..... +.|.++ .++.+..+|..|+...|+++|+|+++.|.
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999998765 4566666665433 446666 78889999999999999999999999999
Q ss_pred hcchh---h---hHHHHHHHHHHHHHHHhhhc
Q 045279 231 SKREN---L---QREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 231 ~~~~~---~---~~~~~~~~~~~ll~~ld~~~ 256 (702)
+.+.. . +.....|++.+++..++...
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~ 1205 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNL 1205 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhh
Confidence 87431 1 12455678888988888744
No 87
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.66 E-value=1.5e-15 Score=163.71 Aligned_cols=223 Identities=20% Similarity=0.181 Sum_probs=149.7
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEecccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPEL 499 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l 499 (702)
+++.|.+...+.+...+...+ ....+.+++|+||||||||++++.+++.+ +.+++.+++...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~---------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL---------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT---------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCHHHHHHHHHHHHHHHH---------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 667888877776665442211 12456789999999999999999999988 888999998754
Q ss_pred ccc----------------CcCchHHH-HHHHHHHHHhC-CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC
Q 045279 500 LNK----------------YVGESELA-VRTLFSRARTC-SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD 561 (702)
Q Consensus 500 ~~~----------------~~g~~~~~-~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 561 (702)
.+. +.|.+... ...++..+... .|+||||||+|.+...+ ...+.+..++..++...
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQELG 163 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhcC
Confidence 321 12322333 44444444333 47899999999998542 01566777777665443
Q ss_pred CCCcEEEEEecCCC---CccCccccCCCccce-EEEcCCCCHHHHHHHHHHHhcc--CCCC-CCCCHHHHhhhhcCC--C
Q 045279 562 KRKGVFVIGATNRP---DVMDRAVLRPGRFGK-LLYVPLPTPDERGLILEALARK--KPID-DSVDLHTIAQSKFCE--N 632 (702)
Q Consensus 562 ~~~~~~vI~atn~~---~~ld~a~~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~--~~~~-~~~~~~~la~~~~~~--~ 632 (702)
...++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++..|++..+.. .... .+..++.++. .+. .
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~ 239 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAA--LAAREH 239 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHH--HHHSSS
T ss_pred CCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH--HHHHhc
Confidence 24578889999887 678899988 8875 8999999999999999988764 2222 2333555653 222 1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 633 LSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 633 ~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
-+.+.+.++|+.|+..|..+. ...|+.+|+..|+....
T Consensus 240 G~~r~~~~~l~~a~~~a~~~~-----------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 240 GDARRALDLLRVAGEIAERRR-----------EERVRREHVYSARAEIE 277 (387)
T ss_dssp CCHHHHHHHHHHHHHHHHHTT-----------CSCBCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHcC-----------CCCcCHHHHHHHHHHHh
Confidence 244667788888876554432 12699999999988763
No 88
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.66 E-value=2.5e-15 Score=192.13 Aligned_cols=417 Identities=17% Similarity=0.201 Sum_probs=225.2
Q ss_pred CCceEEEECCCCCCHHHHHHHH-HHHhCCCeEEEechhhhcccccccHHHHHHHHHHHH----------------hhCCc
Q 045279 157 PMAGILLYGPPGCGKTKLAHAI-ANETGVPFYKISATEVVSGVSGASEENIRDLFSKAY----------------RTAPS 219 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~l-a~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----------------~~~p~ 219 (702)
.+.++||+||||||||+++... ++..+.+++.++++.-.+ ...+.+.++... .+...
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 4577999999999999877654 444456677888876432 234444444311 02235
Q ss_pred eEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-----CCCccc
Q 045279 220 IVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-----AVDPAL 294 (702)
Q Consensus 220 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-----~ld~al 294 (702)
|+||||++.-..+.-+.+ ..+.-|...+| ...+++..... .....++.+|||+|++. .+++++
T Consensus 1377 VlFiDDiNmp~~D~yGtQ-----~~ielLrqlld-~~g~yd~~~~~------~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYGTQ-----RVITFIRQMVE-KGGFWRTSDHT------WIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEEETTTTCCCCCTTSCC-----HHHHHHHHHHH-HSEEEETTTTE------EEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred EEEecccCCCCccccccc-----cHHHHHHHHHH-cCCeEECCCCe------EEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 999999985443321111 12223333343 33344332111 11123489999999973 699999
Q ss_pred cCCCCcceEEEeCCCCHHHHHHHHHHhhcCccc-CCccc--HHHHH------------------hhCCCCCHHHHHHHHH
Q 045279 295 RRPGRFDREIVLGVPDENARVQILSVLTRNLRV-EGSFD--LVKIA------------------RSTPGFVGADLAALAN 353 (702)
Q Consensus 295 ~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~-~~~~~--~~~la------------------~~t~g~~~~dl~~l~~ 353 (702)
.| || .++.++.|+.++...|+..++....- ..... ...++ +.+--|+.||+.++++
T Consensus 1445 ~r--~F-~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~q 1521 (3245)
T 3vkg_A 1445 LR--HA-PILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDR 1521 (3245)
T ss_dssp HT--TC-CEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHH
T ss_pred Hh--hc-eEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHH
Confidence 99 99 67999999999999998765543210 00000 01111 1134579999999988
Q ss_pred HHHHH----------HHHHHHHhhhhccccCccccccCcccccCCCChhhhhhhcccHhHHHHHHhccCCCCc-----Cc
Q 045279 354 KAGNL----------AMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLPEEMERLTITMTDFEEATKMVQPSSR-----RE 418 (702)
Q Consensus 354 ~a~~~----------a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~l~~~~p~~~-----~~ 418 (702)
..... .+-|.+...+.+...|.+.....+.|+.. -+...+...-+... +.
T Consensus 1522 Gll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~---------------~l~~~~~~~F~~~~~~~~~~p 1586 (3245)
T 3vkg_A 1522 ALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDK---------------KIDEVALKHFPSVNLDALKRP 1586 (3245)
T ss_dssp HHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHH---------------HHHHHHHHHCTTSCGGGGCSS
T ss_pred HHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH---------------HHHHHHHHhcCcchhhhcccC
Confidence 76543 12344444444444444443322222211 11111111101000 00
Q ss_pred -cccccCCccccccCCcccchhhhHHHH---------------HHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHH
Q 045279 419 -GFSAIPNVKWEDVGGLDYLRHEFDRYI---------------VRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 419 -~~~~~~~~~~~~i~g~~~~k~~l~~~i---------------~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~ 482 (702)
.+...-...|..+ ..+.++..+.+.+ ...+.|.....|+-..|..|+||+|..|+||++++|.
T Consensus 1587 llf~~f~~~~Y~~v-~~~~l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrL 1665 (3245)
T 3vkg_A 1587 ILYSNWLTKDYQPV-NRSDLREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRF 1665 (3245)
T ss_dssp CCCCSSCC----CC-CHHHHHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHH
T ss_pred cchhhhccccCccC-CHHHHHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHH
Confidence 0000001112222 1222333332222 2345566677777778899999999999999999999
Q ss_pred HHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHH-hCCCeEEEEeCcch-----------hhcc-cCCC--CchHHH
Q 045279 483 VANEAGANFIHIKGPELLNKYVGESELAVRTLFSRAR-TCSPCILFFDEVDA-----------LTTK-RGKE--GGWVVE 547 (702)
Q Consensus 483 la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~-----------l~~~-r~~~--~~~~~~ 547 (702)
.|...++.++.+..+.-++ ..+....++.++.+|. ...|.|++|+|.+- +... .-.+ ..+...
T Consensus 1666 Aa~i~~~~vfqi~i~k~Y~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~LF~~dE~~ 1743 (3245)
T 3vkg_A 1666 VAWMNGLSIYTIKVNNNYK--SSDFDDDLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPGLFEGEEFT 1743 (3245)
T ss_dssp HHHHTTCEEECCC----CC--HHHHHHHHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTTSSCTTTHH
T ss_pred HHHHhCCeeEEEeeeCCCC--HHHHHHHHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccccCCHHHHH
Confidence 9999999999987655322 3355667889998885 45677888887432 2211 1111 112334
Q ss_pred HHHHHHHHhhh--CC----------------CCCCcEEEEEecCCCCc------cCccccCCCccceEEEcCCCCHHHHH
Q 045279 548 RLLNQLLIELD--GA----------------DKRKGVFVIGATNRPDV------MDRAVLRPGRFGKLLYVPLPTPDERG 603 (702)
Q Consensus 548 ~~~~~ll~~l~--~~----------------~~~~~~~vI~atn~~~~------ld~a~~r~gRf~~~i~~~~p~~~~r~ 603 (702)
.+++.+-.... |. ..+=+|++ +-+.--+. --|++.+ ++. +.-|..-..+.+.
T Consensus 1744 ~i~~~~r~~a~~~g~~~dt~~~l~~~Fi~rvr~NLHvVL-~mSPvg~~fR~R~r~fPaLvn--cct-IDWf~~Wp~eAL~ 1819 (3245)
T 3vkg_A 1744 ALMHACKETAQRNGLILDSEEELYKYFTSQVRRNLHVVF-TMNPASPDFHNRSATSPALFN--RCV-LDWFGEWSPEALF 1819 (3245)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHTTTCCEEE-EECTTSTTTTC----CTHHHH--HSE-EEEEESCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCEEEE-EECCCCHHHHHHHHHChHHhh--Cce-eeecCCCCHHHHH
Confidence 44443332211 11 11122333 33322222 2255655 553 5567777788898
Q ss_pred HHHHHHhccCCCC
Q 045279 604 LILEALARKKPID 616 (702)
Q Consensus 604 ~il~~~~~~~~~~ 616 (702)
.+-..++....+.
T Consensus 1820 ~Va~~fl~~~~l~ 1832 (3245)
T 3vkg_A 1820 QVGSEFTRNLDLE 1832 (3245)
T ss_dssp HHHHHHTTTSCCC
T ss_pred HHHHHHHhhcccc
Confidence 9988888876543
No 89
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.66 E-value=5e-16 Score=169.70 Aligned_cols=181 Identities=23% Similarity=0.342 Sum_probs=130.5
Q ss_pred CCcccccCHHHHH---HHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 121 PRFQDLGGMESVL---EELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 121 ~~~~~i~G~~~~k---~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.+|++++|++.++ ..+...+.. + ...++||+||||||||++|++|++.++.+|+.+++...
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~-----------~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--- 86 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA-----------G--HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS--- 86 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH-----------T--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC---
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc-----------C--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC---
Confidence 4899999999999 677766632 1 22679999999999999999999999999999987542
Q ss_pred cccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 198 VSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 198 ~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
....++.+|..+.. ..+.||||||||.+....+ ..|+..++.
T Consensus 87 ----~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q-----------~~LL~~le~------------------- 132 (447)
T 3pvs_A 87 ----GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIED------------------- 132 (447)
T ss_dssp ----CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT-------------------
T ss_pred ----CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH-----------HHHHHHHhc-------------------
Confidence 23445666666543 4678999999998865432 346777764
Q ss_pred CCCeEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc-------cCC-cccHHHHHhhCCCC
Q 045279 274 KPGYVLVIGAT--NRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR-------VEG-SFDLVKIARSTPGF 343 (702)
Q Consensus 274 ~~~~v~vI~at--n~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~-------~~~-~~~~~~la~~t~g~ 343 (702)
+.+++|++| |....+++++++ |+ .++.|+.|+.+++..++...+.... ... ...+..++..+.|
T Consensus 133 --~~v~lI~att~n~~~~l~~aL~s--R~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G- 206 (447)
T 3pvs_A 133 --GTITFIGATTENPSFELNSALLS--RA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG- 206 (447)
T ss_dssp --TSCEEEEEESSCGGGSSCHHHHT--TE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-
T ss_pred --CceEEEecCCCCcccccCHHHhC--ce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-
Confidence 236777777 445689999999 98 5788999999999999998877522 111 1235667777555
Q ss_pred CHHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAGN 357 (702)
Q Consensus 344 ~~~dl~~l~~~a~~ 357 (702)
+.+.+.++++.+..
T Consensus 207 d~R~lln~Le~a~~ 220 (447)
T 3pvs_A 207 DARRALNTLEMMAD 220 (447)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 67777777776654
No 90
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.66 E-value=5.2e-16 Score=169.86 Aligned_cols=194 Identities=16% Similarity=0.180 Sum_probs=134.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTK 537 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 537 (702)
+.+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|.......++||||||++.+.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 6789999999999999999999988 78899999888755443322211112333333336889999999999843
Q ss_pred cCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc---cCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhcc
Q 045279 538 RGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV---MDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 538 r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~---ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
...+..|+..++........+||++.+.+.. +++++++ ||. .++.+++|+.++|..|++..+..
T Consensus 210 ---------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 ---------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1334444444443323344555555454554 8889988 886 78999999999999999998876
Q ss_pred CCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 613 KPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 613 ~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
.++..+ ..++.++. .+ +-+.+++.++++.+...|.... ..|+.+++.++++...+
T Consensus 279 ~~~~i~~e~l~~la~--~~-~gn~R~l~~~L~~~~~~a~~~~------------~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 279 EHGELPEEVLNFVAE--NV-DDNLRRLRGAIIKLLVYKETTG------------KEVDLKEAILLLKDFIK 334 (440)
T ss_dssp HTCCCCTTHHHHHHH--HC-CSCHHHHHHHHHHHHHHHHHSS------------SCCCHHHHHHHTSTTTC
T ss_pred cCCCCCHHHHHHHHH--hc-CCCHHHHHHHHHHHHHHHHHhC------------CCCCHHHHHHHHHHHhh
Confidence 544332 33567773 34 3477899999988876654321 15999999999998764
No 91
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.65 E-value=2e-15 Score=158.94 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=132.8
Q ss_pred CCCCccccc-C--HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 119 EGPRFQDLG-G--MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 119 ~~~~~~~i~-G--~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
+..+|++++ | ...+...+...+..+ ....++++|+||||||||++++++++.+ +.+++++++.
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~-----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL-----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT-----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc-----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 455899997 4 444555555444221 1245789999999999999999999998 8999999999
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
++...+.+.........|.... ..+.+|||||++.+...... ...++..++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~---------~~~l~~~l~~~~~--------------- 129 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKERT---------QIEFFHIFNTLYL--------------- 129 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHHH---------HHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChHH---------HHHHHHHHHHHHH---------------
Confidence 8765544333222222333332 34779999999998753211 1123333332211
Q ss_pred CCCCeEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHH
Q 045279 273 SKPGYVLVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGA 346 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~ 346 (702)
.+..+|+++++.+. .+++++.+ ||. ..+.+++ +.+++.+|+...+........ ..+..++..+ .+.+
T Consensus 130 --~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r 202 (324)
T 1l8q_A 130 --LEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVR 202 (324)
T ss_dssp --TTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHH
T ss_pred --CCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHH
Confidence 22367777777765 68999999 986 6789999 999999999988875544333 2366678777 5778
Q ss_pred HHHHHHHHHHHH
Q 045279 347 DLAALANKAGNL 358 (702)
Q Consensus 347 dl~~l~~~a~~~ 358 (702)
++..++..+...
T Consensus 203 ~l~~~l~~~~~~ 214 (324)
T 1l8q_A 203 EIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888776654
No 92
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.65 E-value=3e-15 Score=147.91 Aligned_cols=201 Identities=20% Similarity=0.187 Sum_probs=138.6
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~ 498 (702)
+...|+++.|.+..++.+...+.. ....+++|+||||||||++++.+++.+ ...++.++++.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 345688899998888777665532 123359999999999999999999876 45678887765
Q ss_pred ccccCcCchHHHHHHHHHHHH------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLFSRAR------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
..+ ...++..+.... ...+.||||||+|.+. ...++.|+..++.. ..++.+|++|
T Consensus 79 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~~--~~~~~~i~~~ 139 (226)
T 2chg_A 79 ERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY--SKSCRFILSC 139 (226)
T ss_dssp TTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred ccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHHHHHHHHHHHhc--CCCCeEEEEe
Confidence 432 122223332222 2468899999999987 45566677666653 3467888899
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~ 651 (702)
|.+..+++++.+ ||. .+.+++|+.++...++...+...+... +..++.++ ..+ +-+.+.+.++++.++..+
T Consensus 140 ~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~~~-~g~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 140 NYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI--YIS-GGDFRKAINALQGAAAIG-- 211 (226)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH--HHH-TTCHHHHHHHHHHHHHTC--
T ss_pred CChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHc-CCCHHHHHHHHHHHHhcC--
Confidence 999999999988 897 899999999999999998887544432 22344455 222 223344444544443221
Q ss_pred HHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 652 DKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 652 ~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
..|+.+|+.+++.
T Consensus 212 --------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 --------------EVVDADTIYQITA 224 (226)
T ss_dssp --------------SCBCHHHHHHHHH
T ss_pred --------------ceecHHHHHHHhc
Confidence 1799999999986
No 93
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.65 E-value=1.8e-16 Score=177.47 Aligned_cols=224 Identities=17% Similarity=0.195 Sum_probs=141.4
Q ss_pred cCCccccccCCcccchhhhHHHHHHHh-hChHHHHHcCC---CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRI-KFPEEYEEFGV---DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~-~~~~~~~~~~~---~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
..+..|++++|.+..++.+.+++.... ..+..+...|. .++.++||+||||||||++|+++|++++.+++.+++++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 345678999999999998888765422 11122222232 25678999999999999999999999999999999988
Q ss_pred ccccCcCchHH-------HHHHHHHHH-----HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcE
Q 045279 499 LLNKYVGESEL-------AVRTLFSRA-----RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGV 566 (702)
Q Consensus 499 l~~~~~g~~~~-------~~~~~f~~a-----~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 566 (702)
+...+...... .+..+|..+ ....++||||||+|.+.... ...++.|+..++.. ...+
T Consensus 113 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l~~~--~~~i 182 (516)
T 1sxj_A 113 VRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFCRKT--STPL 182 (516)
T ss_dssp CCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHHHHC--SSCE
T ss_pred cchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHHHhc--CCCE
Confidence 76542211000 012233332 22467899999999998543 12344555555432 2234
Q ss_pred EEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 567 FVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 567 ~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
++|+++.....+.+ +. |+...+.|++|+.+++..++...+.+.++.. +..++.++. ++++|++.+++..
T Consensus 183 Ili~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~------~s~GdiR~~i~~L 252 (516)
T 1sxj_A 183 ILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQ------TTRGDIRQVINLL 252 (516)
T ss_dssp EEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHH------HTTTCHHHHHHHH
T ss_pred EEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH------HcCCcHHHHHHHH
Confidence 44444333334433 43 4456999999999999999988776544332 334566663 2467888887766
Q ss_pred HHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 646 AMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 646 ~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
...+... ..|+.+++..++..
T Consensus 253 ~~~~~~~-------------~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 253 STISTTT-------------KTINHENINEISKA 273 (516)
T ss_dssp THHHHHS-------------SCCCTTHHHHHHHH
T ss_pred HHHHhcC-------------CCCchHHHHHHHHh
Confidence 5443311 14666777666653
No 94
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.2e-16 Score=162.26 Aligned_cols=201 Identities=11% Similarity=0.060 Sum_probs=138.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEeccccccc----------C------cCchHHHHHH
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIKGPELLNK----------Y------VGESELAVRT 513 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~~~~l~~~----------~------~g~~~~~~~~ 513 (702)
...+.+++|+||||||||++++.+++++ ...++.++|..+.+. + .+.+...++.
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~ 121 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNF 121 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 3567889999999999999999999988 457889998765432 1 2345667788
Q ss_pred HHHHH--HhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCc----cCccccCCCc
Q 045279 514 LFSRA--RTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDV----MDRAVLRPGR 587 (702)
Q Consensus 514 ~f~~a--~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~----ld~a~~r~gR 587 (702)
+|..+ ....+.||||||+|.+. . .+++..|+.... ....+++||+++|..+. +++++.+ |
T Consensus 122 ~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R 187 (318)
T 3te6_A 122 YITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL--K 187 (318)
T ss_dssp HHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH--H
T ss_pred HHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc--c
Confidence 88875 34567899999999998 1 466777766433 24567899999998865 4555555 8
Q ss_pred cc-eEEEcCCCCHHHHHHHHHHHhccCCCC------------------------------------CCCCHHHHhhhhcC
Q 045279 588 FG-KLLYVPLPTPDERGLILEALARKKPID------------------------------------DSVDLHTIAQSKFC 630 (702)
Q Consensus 588 f~-~~i~~~~p~~~~r~~il~~~~~~~~~~------------------------------------~~~~~~~la~~~~~ 630 (702)
|. .+|.|++|+.++...|++..+....-. .+..++.+|...
T Consensus 188 ~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~v-- 265 (318)
T 3te6_A 188 AHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNV-- 265 (318)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHH--
T ss_pred CCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHH--
Confidence 86 689999999999999999988753210 111234444211
Q ss_pred CCCCHHHHH---HHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 631 ENLSGADLA---AMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 631 ~~~sg~dl~---~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
....||+| ++|+.|+..|-++...+... ......|+.+++.++..+
T Consensus 266 -A~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~--~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 266 -ANVSGSTEKAFKICEAAVEISKKDFVRKGGL--QKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp -HHHHCSHHHHHHHHHHHHHHHHHHHHHHTTE--ETTEECCSEECCTHHHHH
T ss_pred -HhhCChHHHHHHHHHHHHHHHHHHHHhccCC--CCCcEEeeHHHHHHHHHH
Confidence 12456777 57778888888776654321 123445666666665543
No 95
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=1.7e-15 Score=158.48 Aligned_cols=217 Identities=19% Similarity=0.231 Sum_probs=145.0
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc-
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV- 198 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~- 198 (702)
.++++|++.+++.+...+......... ..++..++||+||||||||++|+++++.+ +.+++.++|+.+....
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~----~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKD----PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSC----TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccccc
Confidence 356889999999998887553211100 12344689999999999999999999998 4569999998764321
Q ss_pred -----------ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 199 -----------SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 199 -----------~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
.|.... ..+........+++|||||+|.+.. .+...|+..+++.......+
T Consensus 92 ~~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~----- 153 (311)
T 4fcw_A 92 VSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHG----- 153 (311)
T ss_dssp HHHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTS-----
T ss_pred HHHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCC-----
Confidence 111110 1122223334457999999998853 24456777777543210000
Q ss_pred CCCCCCCCCeEEEEEecCC--------------------------CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 045279 268 SDASDSKPGYVLVIGATNR--------------------------PDAVDPALRRPGRFDREIVLGVPDENARVQILSVL 321 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~--------------------------~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~ 321 (702)
... .-.++++|+|||. ...++|+|.+ ||+..+.+++|+.+++..|+..+
T Consensus 154 --~~~-~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 154 --RTV-DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp --CEE-ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHH
T ss_pred --CEE-ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 000 0124779999998 4468889998 99999999999999999999887
Q ss_pred hcCcc---------cCC-cccHHHHHhhCC--CCCHHHHHHHHHHHHHHHHHHHHHh
Q 045279 322 TRNLR---------VEG-SFDLVKIARSTP--GFVGADLAALANKAGNLAMKRIIDQ 366 (702)
Q Consensus 322 ~~~~~---------~~~-~~~~~~la~~t~--g~~~~dl~~l~~~a~~~a~~r~~~~ 366 (702)
+.... ... ...+..++...- .++.++|.++++.++..+..+.+..
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 229 MSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILA 285 (311)
T ss_dssp THHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHHh
Confidence 76531 111 122455665544 5788999999999988776665543
No 96
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.64 E-value=1.6e-15 Score=159.72 Aligned_cols=192 Identities=17% Similarity=0.223 Sum_probs=130.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
.+.+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|..... .++||||||++.+.+.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~ 114 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE 114 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh
Confidence 46789999999999999999999988 899999999887665444332222223333333 47899999999987431
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhccC
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARKK 613 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~~ 613 (702)
..+..++..++........+|+++++.+. .+++++.+ ||. ..+.+++ +.+++..|++..+...
T Consensus 115 ---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~ 182 (324)
T 1l8q_A 115 ---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEF 182 (324)
T ss_dssp ---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhc
Confidence 23333333333222234456666666665 68899988 886 6899999 9999999999998865
Q ss_pred CCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHH---HHHHHHhhcCCCCCCCCccc-cHHHHHHHHhhc
Q 045279 614 PIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMA---ALEDKLISSKSSSDVTPFTI-KLTHFEQALSKI 680 (702)
Q Consensus 614 ~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~---a~~~~~~~~~~~~~~~~~~i-~~~d~~~al~~~ 680 (702)
++..+ ..++.++. .+ -+.+++.++++.++.. ++. . . ....| +.+++.+++...
T Consensus 183 ~~~l~~~~l~~l~~--~~--g~~r~l~~~l~~~~~~~~~~l~-~-~--------~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 183 NLELRKEVIDYLLE--NT--KNVREIEGKIKLIKLKGFEGLE-R-K--------ERKERDKLMQIVEFVANY 240 (324)
T ss_dssp TCCCCHHHHHHHHH--HC--SSHHHHHHHHHHHHHHCHHHHH-H-H--------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH--hC--CCHHHHHHHHHHHHHcCHHHhc-c-c--------cccCCCCHHHHHHHHHHH
Confidence 55332 23556663 33 4668888888877655 111 0 0 01157 888888887653
No 97
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.64 E-value=5.2e-16 Score=163.48 Aligned_cols=184 Identities=15% Similarity=0.176 Sum_probs=130.1
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccC
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKY 503 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 503 (702)
.+.+|++++|.+.+++.+...+. ....+..+|++||||||||++|+++|+.++.+++.+++++..
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~------------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~--- 85 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITS------------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK--- 85 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHH------------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC---
T ss_pred CCCCHHHHhCcHHHHHHHHHHHH------------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC---
Confidence 34578999999999888877654 123455678889999999999999999999999999987632
Q ss_pred cCchHHHHHHHHHHHHhC-----CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 504 VGESELAVRTLFSRARTC-----SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 504 ~g~~~~~~~~~f~~a~~~-----~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
...++..+..+... .++||||||+|.+.+ .+.++.|+..++.. ..++.+|++||.+..+
T Consensus 86 ----~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 86 ----IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY--SSNCSIIITANNIDGI 149 (324)
T ss_dssp ----HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH--GGGCEEEEEESSGGGS
T ss_pred ----HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC--CCCcEEEEEeCCcccc
Confidence 34455554443322 578999999999872 33456666666643 2467888899999999
Q ss_pred CccccCCCccceEEEcCCCCHHHHHHHHHHHh-------ccCCCCC-C-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 579 DRAVLRPGRFGKLLYVPLPTPDERGLILEALA-------RKKPIDD-S-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 579 d~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~-------~~~~~~~-~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
++++.+ ||. ++.|++|+.+++..|++.++ ...++.. + ..++.++. ++++|+|.+++....
T Consensus 150 ~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~------~~~gd~R~a~~~L~~ 218 (324)
T 3u61_B 150 IKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVK------KNFPDFRKTIGELDS 218 (324)
T ss_dssp CTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHH------HTCSCTTHHHHHHHH
T ss_pred CHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH------hCCCCHHHHHHHHHH
Confidence 999999 995 79999999999776655433 2333322 2 33455552 245566666654443
No 98
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.63 E-value=3.7e-16 Score=150.72 Aligned_cols=159 Identities=26% Similarity=0.359 Sum_probs=113.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
...|+++.|.+...+.+...+ ....+.+++|+||||||||++|+.+++.+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l-------------~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVL-------------QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHH-------------hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 345778888887666655532 12446789999999999999999999986 7889999
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
++..+. ..+.+.....++.++..+. ...++||||||+|.+...+...........+..+ ++ ..++.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~---~~----~~~~~~i~~ 157 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA---LA----RGELHCVGA 157 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHH---HH----TTSCCEEEE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh---hc----cCCeEEEEe
Confidence 988876 3455666777778887664 3457899999999998654322211112333333 32 345678888
Q ss_pred cCCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHH
Q 045279 572 TNRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLIL 606 (702)
Q Consensus 572 tn~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il 606 (702)
||.+. .+++++.+ ||+ .+.+++|+.+++.+|+
T Consensus 158 ~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88775 68999999 998 6999999999998775
No 99
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=1e-14 Score=171.28 Aligned_cols=228 Identities=21% Similarity=0.238 Sum_probs=159.7
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
...|++++|.+...+.+.+.+ ....+.+++|+||||||||++|+++|..+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l-------------~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVL-------------CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHH-------------hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 346788999887766655533 22456789999999999999999999986 6678888
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
+.+.+. .+|.|..+..++.+|..+....++||||||+|.+.+.++...+. ..+.+.|...+ ....+.+|++|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~--~~~~~~L~~~l----~~~~~~~I~at 322 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ--VDAANLIKPLL----SSGKIRVIGST 322 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH--HHHHHHHSSCS----SSCCCEEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch--HHHHHHHHHHH----hCCCeEEEEEe
Confidence 888776 46889999999999999988788999999999998765432221 33344333333 34677889999
Q ss_pred CCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccC----CCCC-CCCHHHHh---hhhcCCCCCHHHHH
Q 045279 573 NRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKK----PIDD-SVDLHTIA---QSKFCENLSGADLA 639 (702)
Q Consensus 573 n~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~----~~~~-~~~~~~la---~~~~~~~~sg~dl~ 639 (702)
|.++ .+|+++.+ ||+ .+.|+.|+.+++..|++.+.... .+.. +..+..++ ...+...+....+.
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i 399 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHH
Confidence 8643 57899999 998 79999999999999998876542 2211 12233333 22334456667788
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 640 AMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 640 ~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.++.+|+..+.... .......|+.+|+..++....
T Consensus 400 ~lld~a~~~~~~~~-------~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 400 DVIDEAGARARLMP-------VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHHSS-------SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccc-------ccccCCccCHHHHHHHHHHhc
Confidence 88888764332210 011234789999999998764
No 100
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.63 E-value=2.4e-15 Score=164.60 Aligned_cols=201 Identities=22% Similarity=0.277 Sum_probs=133.8
Q ss_pred CCCCCccccc-CHH--HHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEE
Q 045279 118 KEGPRFQDLG-GME--SVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKI 189 (702)
Q Consensus 118 ~~~~~~~~i~-G~~--~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i 189 (702)
.+..+|++++ |.. .++..+...+.. + + . .++++|+||||||||+|++++++.+ +.+++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~----~------~-~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v 166 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKH----P------G-R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHS----T------T-S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhC----C------C-C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 4556899988 533 333444433311 1 1 1 5789999999999999999999988 7889999
Q ss_pred echhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 190 SATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 190 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
++..+...+.+.........|.......+.+|||||++.+..... ....|+..++....
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~---------~q~~l~~~l~~l~~------------ 225 (440)
T 2z4s_A 167 TSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTG---------VQTELFHTFNELHD------------ 225 (440)
T ss_dssp EHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHH---------HHHHHHHHHHHHHT------------
T ss_pred eHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChH---------HHHHHHHHHHHHHH------------
Confidence 998875543332222112233333333678999999999875321 11234444443221
Q ss_pred CCCCCCCeEEEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCC
Q 045279 270 ASDSKPGYVLVIGATNRPDA---VDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGF 343 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~---ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~ 343 (702)
.+..+||++.+.+.. +++++++ ||. ..+.+++|+.+++.+|+...+....+... ..+..++..+.|
T Consensus 226 -----~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g- 297 (440)
T 2z4s_A 226 -----SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD- 297 (440)
T ss_dssp -----TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-
T ss_pred -----CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-
Confidence 233566666665554 8899999 885 67899999999999999988765443322 236677777765
Q ss_pred CHHHHHHHHHHHHHHH
Q 045279 344 VGADLAALANKAGNLA 359 (702)
Q Consensus 344 ~~~dl~~l~~~a~~~a 359 (702)
+.+++..+++.+...+
T Consensus 298 n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 298 NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8889988888876554
No 101
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=8.9e-15 Score=144.46 Aligned_cols=183 Identities=20% Similarity=0.205 Sum_probs=128.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l 194 (702)
+.+|++++|.+.+++.+.+.+.. ....+++|+||||||||++++.+++.+ ...++.++++..
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCHHHHcCcHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 34799999999999999987732 123459999999999999999999886 356777777653
Q ss_pred hcccccccHHHHHHHHHHHH------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAY------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
.. ...+...+.... ...+.+|+|||+|.+... ....|+..++..
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~------------- 129 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMY------------- 129 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT-------------
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhc-------------
Confidence 21 122223333322 245789999999988642 123455555542
Q ss_pred CCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHH
Q 045279 269 DASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGAD 347 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~d 347 (702)
+.++.+|++||.+..+++++.+ ||. .+.+++|+.++..+++...+........ ..+..++..+.| +.+.
T Consensus 130 ------~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~ 199 (226)
T 2chg_A 130 ------SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRK 199 (226)
T ss_dssp ------TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHH
T ss_pred ------CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 2347889999999999999999 995 8999999999999999987765443322 235556666655 5555
Q ss_pred HHHHHHHH
Q 045279 348 LAALANKA 355 (702)
Q Consensus 348 l~~l~~~a 355 (702)
+.+++..+
T Consensus 200 l~~~l~~~ 207 (226)
T 2chg_A 200 AINALQGA 207 (226)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 102
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.62 E-value=7.3e-14 Score=147.51 Aligned_cols=214 Identities=19% Similarity=0.242 Sum_probs=146.4
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCc
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYV 504 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~ 504 (702)
...+++..|.+.++..+...+.... ..+ .++.+++|+||||||||++++++|+.++.++...+++.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~-------~~~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~--- 89 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAK-------MRG-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK--- 89 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHH-------HHT-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS---
T ss_pred CccHHHccCcHHHHHHHHHHHHHHH-------hcC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC---
Confidence 4467778888777776655443321 111 34577999999999999999999999998887776654321
Q ss_pred CchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC----------------CCCcEEE
Q 045279 505 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD----------------KRKGVFV 568 (702)
Q Consensus 505 g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------------~~~~~~v 568 (702)
...+..++.. ...++|+||||++.+.+ .+.+.|+..++... ....+.+
T Consensus 90 ---~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 90 ---QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ---HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ---HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 2233344332 13568999999999872 33334444443221 0123677
Q ss_pred EEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHH
Q 045279 569 IGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAM 647 (702)
Q Consensus 569 I~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~ 647 (702)
+++|+++..+++++.+ ||...+.+++|+.+++.+|++...+..+...+ ..+..++. .+.| +.+++.++++.+..
T Consensus 154 i~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~--~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 154 VGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAK--RSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH--TSTT-CHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHH--hcCC-ChHHHHHHHHHHHH
Confidence 7899999999999998 99888999999999999999998776554322 23455663 3333 45777788887766
Q ss_pred HHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 648 AALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 648 ~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.|..+.. ..|+.+++.+|+....
T Consensus 229 ~a~~~~~-----------~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 229 MLTVVKA-----------DRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHTC-----------SSBCHHHHHHHHHHHT
T ss_pred HHHHcCC-----------CCcCHHHHHHHHHHhC
Confidence 5554321 2689999999998775
No 103
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=4.7e-15 Score=159.85 Aligned_cols=213 Identities=22% Similarity=0.227 Sum_probs=143.7
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----------CCeEEEEecc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----------GANFIHIKGP 497 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----------~~~~~~i~~~ 497 (702)
+++.|.+...+.+...+..... ...+.+++|+||||||||++|+.+++.+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6788888888888776654321 2445689999999999999999999987 8999999977
Q ss_pred ccc-cc-----------------CcCch-HHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHH-HHHHHHhh
Q 045279 498 ELL-NK-----------------YVGES-ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERL-LNQLLIEL 557 (702)
Q Consensus 498 ~l~-~~-----------------~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~-~~~ll~~l 557 (702)
... +. +.|.+ ...+..++..+... +.||||||+|.+...+. .++ +..|+...
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~-------~~~~l~~l~~~~ 162 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG-------GDIVLYQLLRSD 162 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT-------SHHHHHHHHTSS
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC-------CceeHHHHhcCC
Confidence 643 11 11221 23344445444443 34999999999975321 233 44444332
Q ss_pred hCCCCCCcEEEEEecCCC---CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhcc--CCC-CCCCCHHHHhhhhcCC
Q 045279 558 DGADKRKGVFVIGATNRP---DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARK--KPI-DDSVDLHTIAQSKFCE 631 (702)
Q Consensus 558 ~~~~~~~~~~vI~atn~~---~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~--~~~-~~~~~~~~la~~~~~~ 631 (702)
.++.||++||.+ +.+++++.+ ||...+.|++|+.++...|++..+.. ... ..+..++.++. .+.
T Consensus 163 ------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~--~~~ 232 (384)
T 2qby_B 163 ------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAA--ISA 232 (384)
T ss_dssp ------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHH--HHH
T ss_pred ------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHH--HHH
Confidence 678899999987 678999888 88779999999999999999998764 111 12233455553 332
Q ss_pred CC--CHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 632 NL--SGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 632 ~~--sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
+. +.+.+.++|+.|+..|. ....|+.+|+..|+....
T Consensus 233 ~~~G~~r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 233 KEHGDARKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TTCCCHHHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHh
Confidence 22 22445566666665443 113689999999887764
No 104
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.62 E-value=5.8e-15 Score=147.88 Aligned_cols=202 Identities=20% Similarity=0.260 Sum_probs=141.8
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCe--------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGAN-------------- 490 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~-------------- 490 (702)
...|+++.|.+..++.+...+.. + ..+..++|+||||||||++++.+++.+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 44678899988888877765532 1 234578999999999999999999877431
Q ss_pred ----------EEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 491 ----------FIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 491 ----------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
++.+.... ......++.++..+. ...+.+|||||+|.+. ...++.|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~-----------~~~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc-----------HHHHHHHHHH
Confidence 22222111 122334555665443 2357899999999987 6677888888
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg 635 (702)
++.. ..++.+|++||.+..+++++.+ |+ ..+.+++|+.++..+++..++...+... +..++.++ ..+.| +.
T Consensus 150 l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~--~~~~G-~~ 221 (250)
T 1njg_A 150 LEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA--RAAEG-SL 221 (250)
T ss_dssp HHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH--HHHTT-CH
T ss_pred HhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH--HHcCC-CH
Confidence 8753 4578888899999999999988 76 6899999999999999999887654432 22355566 34544 66
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 636 ADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 636 ~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
+.+.++++.|+..+ ...|+.+|+.+++.
T Consensus 222 ~~~~~~~~~~~~~~---------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 222 RDALSLTDQAIASG---------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHHHTTT---------------TSSBCHHHHHHHSC
T ss_pred HHHHHHHHHHHhcc---------------CceecHHHHHHHhC
Confidence 77888877664211 01699999998863
No 105
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.61 E-value=2.9e-15 Score=157.77 Aligned_cols=171 Identities=16% Similarity=0.204 Sum_probs=124.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccc
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVS 199 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~ 199 (702)
+.+|++++|.+++++.+...+.. -..++.+|++||||||||++++++|+.++.+++.+++++..
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~---- 85 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK---- 85 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC----
T ss_pred CCCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC----
Confidence 34899999999999999987741 23446688889999999999999999999999999987631
Q ss_pred cccHHHHHHHHHHHHhh-----CCceEEechhhHhh-hcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 200 GASEENIRDLFSKAYRT-----APSIVFIDEIDAIA-SKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 200 g~~~~~~~~~f~~a~~~-----~p~il~iDEid~l~-~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
...+...+...... .+.||||||+|.+. .. ....|+..++...
T Consensus 86 ---~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-----------~~~~L~~~le~~~----------------- 134 (324)
T 3u61_B 86 ---IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-----------SQRHLRSFMEAYS----------------- 134 (324)
T ss_dssp ---HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-----------HHHHHHHHHHHHG-----------------
T ss_pred ---HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-----------HHHHHHHHHHhCC-----------------
Confidence 33444444443332 46799999999886 22 2334666666532
Q ss_pred CCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-------cccCC-c-ccHHHHHhhCCC
Q 045279 274 KPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-------LRVEG-S-FDLVKIARSTPG 342 (702)
Q Consensus 274 ~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-------~~~~~-~-~~~~~la~~t~g 342 (702)
.++.+|++||.+..+++++++ || .++.|+.|+.+++.+|+..+... ..... . ..+..++..+.|
T Consensus 135 --~~~~iI~~~n~~~~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 135 --SNCSIIITANNIDGIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp --GGCEEEEEESSGGGSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred --CCcEEEEEeCCccccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 347899999999999999999 99 67999999999987776544322 22222 2 335667777665
No 106
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.61 E-value=1.8e-15 Score=159.90 Aligned_cols=210 Identities=15% Similarity=0.113 Sum_probs=140.1
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc------ccc
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE------LLN 501 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~------l~~ 501 (702)
++++.|.+.++..+...+.. +.+++|+||||||||++|+++|+.++.+++.+++.. +.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 46688888887766554322 258999999999999999999999999999888732 222
Q ss_pred cCcCchHHHHHHHHHHHHh--CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC---------CCCCcEEEEE
Q 045279 502 KYVGESELAVRTLFSRART--CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---------DKRKGVFVIG 570 (702)
Q Consensus 502 ~~~g~~~~~~~~~f~~a~~--~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~---------~~~~~~~vI~ 570 (702)
........ ..|. ... ...+||||||++.+. ...++.|+..|+.. ....+++||+
T Consensus 91 ~~~~~~~~---~~~~-~~~g~l~~~vl~iDEi~~~~-----------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 91 TMIYNQHK---GNFE-VKKGPVFSNFILADEVNRSP-----------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp EEEEETTT---TEEE-EEECTTCSSEEEEETGGGSC-----------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred ceeecCCC---CceE-eccCcccccEEEEEccccCC-----------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 11100000 0000 000 013799999999987 67778888777642 1234678888
Q ss_pred ecCCCC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCC----------------------C-CCCHH
Q 045279 571 ATNRPD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPID----------------------D-SVDLH 622 (702)
Q Consensus 571 atn~~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~----------------------~-~~~~~ 622 (702)
|+|..+ .+++++++ ||+..+.++.|+.+++.+|++..+...... - +..++
T Consensus 156 t~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~ 233 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEK 233 (331)
T ss_dssp EECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHH
T ss_pred ecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHH
Confidence 888543 38999999 999889999999999999999987653211 0 11122
Q ss_pred HHhhhh-----------------cCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 623 TIAQSK-----------------FCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 623 ~la~~~-----------------~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
.++... ...+.+.+.+.++++.|...|.-+.. ..|+.+|+.+|+..+
T Consensus 234 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~-----------~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 234 YIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNR-----------DYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTC-----------SBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCC-----------CCCCHHHHHHHHHHH
Confidence 332100 11255788888888877655544322 268999999988765
No 107
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.61 E-value=2.7e-15 Score=165.62 Aligned_cols=187 Identities=25% Similarity=0.303 Sum_probs=127.6
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
...+++++|.+...+.+...+.. ....++||+||||||||++|+++|..+ +.+|+.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899998887766654321 345689999999999999999999986 7788888
Q ss_pred ecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 495 KGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 495 ~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+++ ..|.|+.+..++.+|..+....++||||| .. ....+.|+..|+ ...+.+|++||.
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~-----------~~a~~~L~~~L~----~g~v~vI~at~~ 300 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLA----RGELQCIGATTL 300 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTT----SSSCEEEEECCT
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----Cc-----------hhHHHHHHHhhc----CCCEEEEecCCH
Confidence 887 67888888889999999998889999999 11 345555655554 457899999999
Q ss_pred CC-----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCC-----CHHHHh---hhhcCCCCCHHHHHHH
Q 045279 575 PD-----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSV-----DLHTIA---QSKFCENLSGADLAAM 641 (702)
Q Consensus 575 ~~-----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~-----~~~~la---~~~~~~~~sg~dl~~~ 641 (702)
++ .+|+++.+ ||. .|.|+.|+.+++..|++.++......... .+..++ ...+...+.......+
T Consensus 301 ~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 301 DEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp TTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred HHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 87 68999999 997 59999999999999999887763222122 233333 2222334445677788
Q ss_pred HHHHHHHH
Q 045279 642 MNEAAMAA 649 (702)
Q Consensus 642 ~~~a~~~a 649 (702)
+.+|+..+
T Consensus 378 l~~a~~~~ 385 (468)
T 3pxg_A 378 IDEAGSKV 385 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777543
No 108
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.61 E-value=1.1e-15 Score=146.87 Aligned_cols=150 Identities=23% Similarity=0.399 Sum_probs=109.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEec
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISA 191 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~ 191 (702)
+|++++|.+..++.+.+.+. .....+++|+||||||||++|+++++.+ +.+++.+++
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~-------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILS-------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHT-------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred ccchhhcchHHHHHHHHHHh-------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 79999999999999887662 2345789999999999999999999987 678888888
Q ss_pred hhhhcc--cccccHHHHHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 192 TEVVSG--VSGASEENIRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 192 ~~l~~~--~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
..+... +.+.....+..++..+... .|.+|||||+|.+...+..... ...+.+.|...++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~--~~~~~~~l~~~~~~-------------- 150 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG--ALDAGNILKPMLAR-------------- 150 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT--SCCTHHHHHHHHHT--------------
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc--chHHHHHHHHHHhc--------------
Confidence 877643 4455566677777776655 5779999999999744321000 01122233333332
Q ss_pred CCCCCCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCC
Q 045279 269 DASDSKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPD 310 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~ 310 (702)
+.+++|++||.+. .+++++++ ||. .+.++.|+
T Consensus 151 -------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 -------GELRCIGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp -------TCSCEEEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred -------CCeeEEEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 2378999998764 68999999 996 58999885
No 109
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.60 E-value=1.2e-14 Score=170.41 Aligned_cols=213 Identities=19% Similarity=0.249 Sum_probs=145.8
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSG 200 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g 200 (702)
++++|++.+++.+...+........ ...++..++||+||||||||++|+++|+.+ +.+++.++|+.+...+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5789999999999888754321110 011233479999999999999999999997 688999999999877655
Q ss_pred ccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEE
Q 045279 201 ASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLV 280 (702)
Q Consensus 201 ~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~v 280 (702)
. ...++.......++|||||||+.+.+ .+...|+..|++... ...++. .....++++
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~-~~~~g~-------~~~~~~~~i 623 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRL-TDSKGR-------TVDFRNTIL 623 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBC-C------------CCBCTTCEE
T ss_pred c----cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeE-EcCCCC-------EeccCCeEE
Confidence 4 12233344455678999999987753 355678888886322 111111 112345899
Q ss_pred EEecCCCCC------------CCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCc---------ccCCc-ccHHHHHh
Q 045279 281 IGATNRPDA------------VDPALRRPGRFDREIVLGVPDENARVQILSVLTRNL---------RVEGS-FDLVKIAR 338 (702)
Q Consensus 281 I~atn~~~~------------ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~---------~~~~~-~~~~~la~ 338 (702)
|+|||.+.. +.|.|++ ||+.+|.|++|+.+++..|+..++... .+... ..+..++.
T Consensus 624 I~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 624 IMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp EEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred EEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 999997543 7899998 999999999999999999998776543 11111 12445554
Q ss_pred --hCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045279 339 --STPGFVGADLAALANKAGNLAMKRIID 365 (702)
Q Consensus 339 --~t~g~~~~dl~~l~~~a~~~a~~r~~~ 365 (702)
....+..++|++++.+++.....+.+-
T Consensus 702 ~~~~~~~~~R~L~~~i~~~v~~~l~~~~l 730 (758)
T 3pxi_A 702 EGVDLEYGARPLRRAIQKHVEDRLSEELL 730 (758)
T ss_dssp GGCCTTTTTTTHHHHHHHHTHHHHHHHHH
T ss_pred hCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 345677899999999887777655543
No 110
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.60 E-value=4.5e-15 Score=159.65 Aligned_cols=237 Identities=23% Similarity=0.229 Sum_probs=136.7
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcc-----------------cccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLP-----------------QWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~-----------------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
+.|+|++.+|+.|...+...+...... ..-...+..++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 358999999999987774322221100 000123567899999999999999999999999999
Q ss_pred EEEechhhh-ccccccc-HHHHHHHHHHH----HhhCCceEEechhhHhhhcchhhh---HHHHHHHHHHHHHHHhhhcc
Q 045279 187 YKISATEVV-SGVSGAS-EENIRDLFSKA----YRTAPSIVFIDEIDAIASKRENLQ---REMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 187 ~~i~~~~l~-~~~~g~~-~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ld~~~~ 257 (702)
+.+++..+. .++.|.. ...+..++..+ ....++||||||+|.+...+.... +.....+...|+..|++...
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999999875 3455543 33445555432 133577999999999986633211 11112367788888885432
Q ss_pred ccCC-CCCC-CCCCCCCCCCCeEEEEEecCC-----------------------------------------CCCCCccc
Q 045279 258 LVQP-GDQK-SKSDASDSKPGYVLVIGATNR-----------------------------------------PDAVDPAL 294 (702)
Q Consensus 258 ~~~~-~~~~-~~~~~~~~~~~~v~vI~atn~-----------------------------------------~~~ld~al 294 (702)
.+.. ++.. .......-...++++|+++|. ...+.|.|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 1111 1110 000000011244678887762 11256777
Q ss_pred cCCCCcceEEEeCCCCHHHHHHHHHH----hhcC---------cccCCc-ccHHHHHhhC--CCCCHHHHHHHHHHHHHH
Q 045279 295 RRPGRFDREIVLGVPDENARVQILSV----LTRN---------LRVEGS-FDLVKIARST--PGFVGADLAALANKAGNL 358 (702)
Q Consensus 295 ~r~~Rf~~~i~~~~p~~~er~~Il~~----~~~~---------~~~~~~-~~~~~la~~t--~g~~~~dl~~l~~~a~~~ 358 (702)
.+ ||+.++.|++++.++...|+.. ++.. ..+... ..+..++... .....+.+.+++..++..
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 77 9988999999999999999963 2211 111111 1234444442 235678888888887766
Q ss_pred HHHH
Q 045279 359 AMKR 362 (702)
Q Consensus 359 a~~r 362 (702)
++.+
T Consensus 339 ~~~~ 342 (376)
T 1um8_A 339 IMFD 342 (376)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 5543
No 111
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=2.6e-15 Score=178.02 Aligned_cols=203 Identities=27% Similarity=0.326 Sum_probs=131.1
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEE
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHI 494 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i 494 (702)
...+++++|.+.....+.+.+. ...+.+++|+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~-------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILL-------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHH-------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHh-------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 3467888898876665555331 1345679999999999999999999987 8899999
Q ss_pred eccccc--ccCcCchHHHHHHHHHHHHhC-CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 495 KGPELL--NKYVGESELAVRTLFSRARTC-SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 495 ~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
+++.+. ..|.|+.+..++.+|..+... .|+||||||+|.+.+.+...+. ..+.+.|...++ ...+.+|++
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l~----~~~i~~I~a 305 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA----RGELRLIGA 305 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEEE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHHh----CCCeEEEEe
Confidence 999887 568899999999999998864 6899999999999866543322 233444444443 345678899
Q ss_pred cCCCC----ccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC----CC-CCCCHHHH---hhhhcCCCCCHHHHH
Q 045279 572 TNRPD----VMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP----ID-DSVDLHTI---AQSKFCENLSGADLA 639 (702)
Q Consensus 572 tn~~~----~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~----~~-~~~~~~~l---a~~~~~~~~sg~dl~ 639 (702)
||.++ .+|+++.+ ||+. +.|+.|+.+++..|++.++.... +. .+..+..+ +...++..|-.....
T Consensus 306 t~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 306 TTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp ECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred cCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 98765 47999999 9985 99999999999999988766432 11 11122332 333345677777888
Q ss_pred HHHHHHHHHHH
Q 045279 640 AMMNEAAMAAL 650 (702)
Q Consensus 640 ~~~~~a~~~a~ 650 (702)
.++.+|+..+.
T Consensus 383 ~lldea~a~~~ 393 (854)
T 1qvr_A 383 DLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88887775443
No 112
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.60 E-value=6.6e-15 Score=147.61 Aligned_cols=181 Identities=13% Similarity=0.099 Sum_probs=122.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
.+.+++|+||||||||++|++++..+ +.+++.++++++...+.. .+.. ...+.+|||||++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~vliiDe~~~~~~~- 119 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLEG--LEQFDLICIDDVDAVAGH- 119 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGTT--GGGSSEEEEETGGGGTTC-
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHHh--ccCCCEEEEeccccccCC-
Confidence 56789999999999999999999877 478888998887654321 1111 135789999999998742
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcE-EEEEecCCCC---ccCccccCCCccc--eEEEcCCCCHHHHHHHHHHHhcc
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGV-FVIGATNRPD---VMDRAVLRPGRFG--KLLYVPLPTPDERGLILEALARK 612 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~-~vI~atn~~~---~ld~a~~r~gRf~--~~i~~~~p~~~~r~~il~~~~~~ 612 (702)
......|+..++.......+ +|+.+++.+. .+++++.+ ||. ..+.+++|+.+++..++..++..
T Consensus 120 --------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~ 189 (242)
T 3bos_A 120 --------PLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAM 189 (242)
T ss_dssp --------HHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHH
Confidence 11233343333332222333 4444444443 45677877 886 89999999999999999999886
Q ss_pred CCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHh
Q 045279 613 KPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALS 678 (702)
Q Consensus 613 ~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~ 678 (702)
.+...+ ..++.++ ..+ +-+.+++.++++.++..|..+. ..|+.+++.++++
T Consensus 190 ~~~~~~~~~~~~l~--~~~-~g~~r~l~~~l~~~~~~a~~~~------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 190 RGLQLPEDVGRFLL--NRM-ARDLRTLFDVLDRLDKASMVHQ------------RKLTIPFVKEMLR 241 (242)
T ss_dssp TTCCCCHHHHHHHH--HHT-TTCHHHHHHHHHHHHHHHHHHT------------CCCCHHHHHHHHT
T ss_pred cCCCCCHHHHHHHH--HHc-cCCHHHHHHHHHHHHHHHHHhC------------CCCcHHHHHHHhh
Confidence 554322 2345555 233 3367888888888887664432 1699999999875
No 113
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.59 E-value=3.4e-14 Score=142.38 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=125.6
Q ss_pred CCCCcccccCH---HHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Q 045279 119 EGPRFQDLGGM---ESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISAT 192 (702)
Q Consensus 119 ~~~~~~~i~G~---~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~ 192 (702)
+..+|++++|. +.+++.+...+. ...+.+++|+||||||||++++++++.+. .+++.+++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAAS-------------GDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHH-------------TCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHh-------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34589999973 456666665442 12457899999999999999999998874 778899988
Q ss_pred hhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 193 EVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 193 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
++........ .. ...+.+|||||++.+..... ....|+..++....
T Consensus 90 ~~~~~~~~~~--------~~--~~~~~vliiDe~~~~~~~~~---------~~~~l~~~l~~~~~--------------- 135 (242)
T 3bos_A 90 IHASISTALL--------EG--LEQFDLICIDDVDAVAGHPL---------WEEAIFDLYNRVAE--------------- 135 (242)
T ss_dssp GGGGSCGGGG--------TT--GGGSSEEEEETGGGGTTCHH---------HHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHH--------Hh--ccCCCEEEEeccccccCCHH---------HHHHHHHHHHHHHH---------------
Confidence 8765432211 11 13467999999998865321 11223333332211
Q ss_pred CCCCeE-EEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCH
Q 045279 273 SKPGYV-LVIGATNRPD---AVDPALRRPGRFD--REIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVG 345 (702)
Q Consensus 273 ~~~~~v-~vI~atn~~~---~ld~al~r~~Rf~--~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~ 345 (702)
.+.+ +|++++..+. .+++++.+ ||. ..+.++.|+.+++.+++..++........ ..+..++..+.| +.
T Consensus 136 --~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~ 210 (242)
T 3bos_A 136 --QKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DL 210 (242)
T ss_dssp --HCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CH
T ss_pred --cCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CH
Confidence 1224 4444444443 45688888 885 78999999999999999988875544332 235667777765 78
Q ss_pred HHHHHHHHHHHHHH
Q 045279 346 ADLAALANKAGNLA 359 (702)
Q Consensus 346 ~dl~~l~~~a~~~a 359 (702)
+.+.++++.+...+
T Consensus 211 r~l~~~l~~~~~~a 224 (242)
T 3bos_A 211 RTLFDVLDRLDKAS 224 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888776654
No 114
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=5.3e-14 Score=151.78 Aligned_cols=226 Identities=18% Similarity=0.126 Sum_probs=152.6
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCc--ceEEEcCCCCChhHHHHHHHHHh----CCeEEEEeccccccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLET--GFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLNK 502 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~--~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~ 502 (702)
+++.|.+...+.+...+..... + ..+. +++|+||||||||+++++++..+ +..++.+++....+.
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 6788888888877776654321 1 2233 79999999999999999999988 678899987654321
Q ss_pred ----------------CcCchHHH-HHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCC--
Q 045279 503 ----------------YVGESELA-VRTLFSRART-CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADK-- 562 (702)
Q Consensus 503 ----------------~~g~~~~~-~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~-- 562 (702)
..+..... ...+...... ..|.||||||++.+. ...+..|+..++....
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~~~ 156 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADKLG 156 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHHHS
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCCCC
Confidence 01212222 2222222222 358899999999984 6778888877764322
Q ss_pred CCcEEEEEecCCC---CccCccccCCCccce-EEEcCCCCHHHHHHHHHHHhcc---CCCCCCCCHHHHhhhhcCCC---
Q 045279 563 RKGVFVIGATNRP---DVMDRAVLRPGRFGK-LLYVPLPTPDERGLILEALARK---KPIDDSVDLHTIAQSKFCEN--- 632 (702)
Q Consensus 563 ~~~~~vI~atn~~---~~ld~a~~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~---~~~~~~~~~~~la~~~~~~~--- 632 (702)
..++.||++||.+ +.+++.+.+ ||.. .+.|++++.++...++...+.. ...-.+..++.++. .+.+
T Consensus 157 ~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~ 232 (389)
T 1fnn_A 157 AFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIAD--ITGAQTP 232 (389)
T ss_dssp SCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHH--HHSBSST
T ss_pred cCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHhhccc
Confidence 2478888899887 567888777 8875 8999999999999999988764 11122233455553 3321
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHH
Q 045279 633 -----LSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQI 689 (702)
Q Consensus 633 -----~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~ 689 (702)
-..+.+.++|+.|+..|..+.. ..|+.+|+..|+.........+.+
T Consensus 233 ~~~~~G~~r~~~~~l~~a~~~a~~~~~-----------~~i~~~~v~~~~~~~~~~~~~~~l 283 (389)
T 1fnn_A 233 LDTNRGDARLAIDILYRSAYAAQQNGR-----------KHIAPEDVRKSSKEVLFGISEEVL 283 (389)
T ss_dssp TCTTSCCHHHHHHHHHHHHHHHHHTTC-----------SSCCHHHHHHHHHHHSCCCCHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhCC-----------CCcCHHHHHHHHHHHhhhhHHHHH
Confidence 1346677888888766654321 268889999998887665544433
No 115
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1.9e-14 Score=155.05 Aligned_cols=204 Identities=20% Similarity=0.195 Sum_probs=134.3
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEec
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---------GVPFYKISA 191 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---------~~~~~~i~~ 191 (702)
...++++|.+..++.+...+...+. ...+.+++|+||||||||++++.+++.+ +.+++.++|
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 3568999999999999987643221 2346789999999999999999999988 788899998
Q ss_pred hhhhcc----------------cccccHHH-HHHHHHHHHh-hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHh
Q 045279 192 TEVVSG----------------VSGASEEN-IRDLFSKAYR-TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMD 253 (702)
Q Consensus 192 ~~l~~~----------------~~g~~~~~-~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld 253 (702)
...... ..|..... ...++..... +.|.+|||||+|.+..... ....+..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~------~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG------GQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTT------HHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCC------CChHHHhHhhchh
Confidence 753221 11222223 3333433322 2477999999999875420 1123333443332
Q ss_pred hhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhcC--ccc
Q 045279 254 ESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFDR-EIVLGVPDENARVQILSVLTRN--LRV 327 (702)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~~-~i~~~~p~~~er~~Il~~~~~~--~~~ 327 (702)
... .+.++.+|++||.+ +.+++++.+ ||.. .+.|++|+.+++.+|+...+.. ...
T Consensus 161 ~~~-----------------~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~ 221 (387)
T 2v1u_A 161 ELG-----------------DRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPG 221 (387)
T ss_dssp CC----------------------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT
T ss_pred hcC-----------------CCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC
Confidence 110 02348899999887 688999999 8864 7999999999999999987653 111
Q ss_pred C-CcccHHHHHhhCC---CCCHHHHHHHHHHHHHHH
Q 045279 328 E-GSFDLVKIARSTP---GFVGADLAALANKAGNLA 359 (702)
Q Consensus 328 ~-~~~~~~~la~~t~---g~~~~dl~~l~~~a~~~a 359 (702)
. ....+..+++.+. | .++.+.++++.|...+
T Consensus 222 ~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 222 VLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIA 256 (387)
T ss_dssp TBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 1 1223455555554 4 6677777777775544
No 116
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.58 E-value=2e-14 Score=152.84 Aligned_cols=171 Identities=23% Similarity=0.350 Sum_probs=104.1
Q ss_pred CCCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeE----EEechh
Q 045279 118 KEGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFY----KISATE 193 (702)
Q Consensus 118 ~~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~----~i~~~~ 193 (702)
.+..+|++|+|.+.+++.+...+.. ....++||+||||||||++|+++++.++.... .++|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3456899999999988765433311 12346999999999999999999998863110 012211
Q ss_pred hhcc---------------------cccccHHHH------HHHHHHH---------HhhCCceEEechhhHhhhcchhhh
Q 045279 194 VVSG---------------------VSGASEENI------RDLFSKA---------YRTAPSIVFIDEIDAIASKRENLQ 237 (702)
Q Consensus 194 l~~~---------------------~~g~~~~~~------~~~f~~a---------~~~~p~il~iDEid~l~~~~~~~~ 237 (702)
.... ..+.+...+ ...+... ....+++|||||+|.+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----- 159 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----- 159 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-----
Confidence 1100 011111111 1111111 0113569999999988643
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC-CCCccccCCCCcceEEEeCCC-CHHHHH
Q 045279 238 REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD-AVDPALRRPGRFDREIVLGVP-DENARV 315 (702)
Q Consensus 238 ~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~-~ld~al~r~~Rf~~~i~~~~p-~~~er~ 315 (702)
....|+..++.....+...+. ....+.++++|+|||+.+ .+++++++ ||+..+.++.| +.+++.
T Consensus 160 ------~~~~Ll~~le~~~~~~~~~g~------~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~ 225 (350)
T 1g8p_A 160 ------IVDLLLDVAQSGENVVERDGL------SIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRV 225 (350)
T ss_dssp ------HHHHHHHHHHHSEEEECCTTC------CEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHH
T ss_pred ------HHHHHHHHHhcCceEEEecce------EEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHH
Confidence 234567777653221211111 011123599999999854 89999999 99888999999 567777
Q ss_pred HHHHH
Q 045279 316 QILSV 320 (702)
Q Consensus 316 ~Il~~ 320 (702)
+|+..
T Consensus 226 ~il~~ 230 (350)
T 1g8p_A 226 EVIRR 230 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
No 117
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4e-15 Score=154.02 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=115.6
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEEechhhh
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----------GVPFYKISATEVV 195 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----------~~~~~~i~~~~l~ 195 (702)
|.|.++.++.+...+...+. -..+.+++|+||||||||++++.+++.+ ...++.+||..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i~---------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM---------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 78889999988877754332 3467889999999999999999999998 3467889987653
Q ss_pred cc----------c------ccccHHHHHHHHHHH--HhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 196 SG----------V------SGASEENIRDLFSKA--YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 196 ~~----------~------~g~~~~~~~~~f~~a--~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
+. . .+.....+..+|... ....+.|+||||+|.+. .+ .++..|+.+...
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q--------~~L~~l~~~~~~--- 159 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE--------KILQYFEKWISS--- 159 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT--------HHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc--------hHHHHHHhcccc---
Confidence 32 1 233455667777764 24467899999999998 11 233334432221
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCC----CCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCc
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDA----VDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~----ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
..+++.||+++|..+. +++++++ ||. .+|.|++|+.++..+|++..+...
T Consensus 160 ----------------~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 160 ----------------KNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp ----------------SSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 1345899999998763 5677777 886 679999999999999998877553
No 118
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.57 E-value=4.9e-14 Score=141.03 Aligned_cols=184 Identities=24% Similarity=0.325 Sum_probs=129.4
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPF------------- 186 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~------------- 186 (702)
+..|++++|.+.+++.+.+.+.. + ..+..++|+||||||||++++.+++.+....
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 86 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 33799999999999999887732 1 2235799999999999999999999875321
Q ss_pred -----------EEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 187 -----------YKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 187 -----------~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
+.++... ......+..++..+. ...+.+|+|||+|.+... ....|+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-----------~~~~l~~~ 149 (250)
T 1njg_A 87 REIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-----------SFNALLKT 149 (250)
T ss_dssp HHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-----------HHHHHHHH
T ss_pred HHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-----------HHHHHHHH
Confidence 1111110 112233445554432 234679999999987422 23456666
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC-c
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG-S 330 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~-~ 330 (702)
++.. +.++.+|++||.+..+++.+.+ |+ ..+.+++|+.++..+++...+....... .
T Consensus 150 l~~~-------------------~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~ 207 (250)
T 1njg_A 150 LEEP-------------------PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEP 207 (250)
T ss_dssp HHSC-------------------CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCH
T ss_pred HhcC-------------------CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 6532 2348899999998899999998 87 7899999999999999998876544332 2
Q ss_pred ccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 331 FDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 331 ~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
..+..+++.+.| +++.+..+++.+
T Consensus 208 ~~~~~l~~~~~G-~~~~~~~~~~~~ 231 (250)
T 1njg_A 208 RALQLLARAAEG-SLRDALSLTDQA 231 (250)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 336677888866 788888887766
No 119
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.57 E-value=4.8e-15 Score=155.42 Aligned_cols=186 Identities=22% Similarity=0.256 Sum_probs=129.6
Q ss_pred cCCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEecc
Q 045279 423 IPNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGP 497 (702)
Q Consensus 423 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~ 497 (702)
..+..|++++|.+.+++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 77 (319)
T 2chq_A 11 YRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (319)
T ss_dssp TSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETT
T ss_pred cCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCc
Confidence 3456788999999888877664421 122359999999999999999999986 3467888887
Q ss_pred cccccCcCchHHHHHHHHHHH-H-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 498 ELLNKYVGESELAVRTLFSRA-R-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a-~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+..+. ......+..+.... . ...+.||||||+|.+. ...++.|+..++.. ..++.+|++||.+
T Consensus 78 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~~~~ 142 (319)
T 2chq_A 78 DERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEMY--SKSCRFILSCNYV 142 (319)
T ss_dssp STTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------HHHHHTTGGGTSSS--SSSEEEEEEESCG
T ss_pred cccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEeCCh
Confidence 65331 11111122221110 1 2457899999999997 56677788777653 3567888899999
Q ss_pred CccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 576 DVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 576 ~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
..+.+++.+ |+. .+.|++|+.+++..++...+.+.+...+ ..++.++ ..++++++.+++..
T Consensus 143 ~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~------~~~~G~~r~~~~~l 204 (319)
T 2chq_A 143 SRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI------YISGGDFRKAINAL 204 (319)
T ss_dssp GGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHH------HTTTTCHHHHHHHH
T ss_pred hhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcCCCHHHHHHHH
Confidence 999999988 886 8999999999999999998887655422 2234444 23455666555443
No 120
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=7.1e-15 Score=164.47 Aligned_cols=200 Identities=20% Similarity=0.234 Sum_probs=126.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhcc-CCCcccccCC---CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLY-HPQLPQWLGV---RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~-~~~~~~~~~~---~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
+.+|++|+|.+.+++.+.+.+..... .+..+...|. .+..++||+||||||||++|+++|+.++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 33899999999999999988864221 1122222232 3568999999999999999999999999999999998764
Q ss_pred cccccccH-------HHHHHHHHHH-----HhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCC
Q 045279 196 SGVSGASE-------ENIRDLFSKA-----YRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGD 263 (702)
Q Consensus 196 ~~~~g~~~-------~~~~~~f~~a-----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~ 263 (702)
........ ..+..+|..+ ....+.||||||+|.+....+. .+..|+..++..
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~--------~l~~L~~~l~~~-------- 178 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG--------GVGQLAQFCRKT-------- 178 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT--------HHHHHHHHHHHC--------
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH--------HHHHHHHHHHhc--------
Confidence 43211000 0012233332 1245789999999999764322 133455555532
Q ss_pred CCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCC-cccHHHHHhhCCC
Q 045279 264 QKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEG-SFDLVKIARSTPG 342 (702)
Q Consensus 264 ~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~-~~~~~~la~~t~g 342 (702)
...+++|+++.....+. .+++ |+ ..+.|+.|+.+++.+++...+....... ...+..+++.+.|
T Consensus 179 -----------~~~iIli~~~~~~~~l~-~l~~--r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 179 -----------STPLILICNERNLPKMR-PFDR--VC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp -----------SSCEEEEESCTTSSTTG-GGTT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred -----------CCCEEEEEcCCCCccch-hhHh--ce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 11255554443333444 4555 55 7899999999999999988775544322 2346778877765
Q ss_pred CCHHHHHHH
Q 045279 343 FVGADLAAL 351 (702)
Q Consensus 343 ~~~~dl~~l 351 (702)
+.+.+.++
T Consensus 244 -diR~~i~~ 251 (516)
T 1sxj_A 244 -DIRQVINL 251 (516)
T ss_dssp -CHHHHHHH
T ss_pred -cHHHHHHH
Confidence 33333333
No 121
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=1.5e-14 Score=151.81 Aligned_cols=167 Identities=15% Similarity=0.159 Sum_probs=122.9
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~ 498 (702)
.+..|+++.|.+..++.+...+.. + .. .+++|+||||+|||++|+++++.+ +.+++.+++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKD-----------G-NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHS-----------C-CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHc-----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 345678899999988877765421 1 22 349999999999999999999986 34678888765
Q ss_pred ccccCcCchHHHHHHHHHHHH-------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 499 LLNKYVGESELAVRTLFSRAR-------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~-------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
.. +...++.++.... ...+.||||||+|.+. ...++.|+..++.. ..++.+|++
T Consensus 83 ~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~il~ 143 (323)
T 1sxj_B 83 DR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGAQQALRRTMELY--SNSTRFAFA 143 (323)
T ss_dssp CC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHHHHTTHHHHHHT--TTTEEEEEE
T ss_pred cc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHHHHHHHHHHhcc--CCCceEEEE
Confidence 32 2344555655544 3347899999999997 55677777777753 346778888
Q ss_pred cCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHh
Q 045279 572 TNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIA 625 (702)
Q Consensus 572 tn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la 625 (702)
||.+..+.+++.+ |+. .+.|++|+.++...++...+...+... +..++.++
T Consensus 144 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 195 (323)
T 1sxj_B 144 CNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAII 195 (323)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH
T ss_pred eCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999988 885 899999999999999998887644332 22345555
No 122
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=7.3e-14 Score=148.70 Aligned_cols=209 Identities=14% Similarity=0.092 Sum_probs=138.5
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC------CeEEEEecc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG------ANFIHIKGP 497 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~------~~~~~i~~~ 497 (702)
.+..|++++|.+.+++.+...+.. ....+++|+||||||||++|+++|+.++ ..++.++++
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 456789999999988877654321 1224599999999999999999999863 468888877
Q ss_pred cccccCcCchHHHHHHHHHHHH----------------hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC
Q 045279 498 ELLNKYVGESELAVRTLFSRAR----------------TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD 561 (702)
Q Consensus 498 ~l~~~~~g~~~~~~~~~f~~a~----------------~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~ 561 (702)
+..+ ...++..+.... ...+.||||||+|.+. ...++.|+..|+...
T Consensus 99 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~~~Ll~~le~~~ 161 (353)
T 1sxj_D 99 DERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQSALRRTMETYS 161 (353)
T ss_dssp SCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHTT
T ss_pred cccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHHHHHHHHHHhcC
Confidence 6421 112222221111 1245799999999998 556777888777543
Q ss_pred CCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHhhhhcCCCCCHHHHHH
Q 045279 562 KRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIAQSKFCENLSGADLAA 640 (702)
Q Consensus 562 ~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la~~~~~~~~sg~dl~~ 640 (702)
.++.+|++||.+..+++++.+ |+. .+.|++|+.++...++...+...++.- +..++.++ ..+.| +.+.+.+
T Consensus 162 --~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~--~~~~G-~~r~~~~ 233 (353)
T 1sxj_D 162 --GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL--DISAG-DLRRGIT 233 (353)
T ss_dssp --TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH--HHTSS-CHHHHHH
T ss_pred --CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH--HHcCC-CHHHHHH
Confidence 345667788999999999988 886 889999999999999999887655432 23345555 22322 2333444
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhc
Q 045279 641 MMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKI 680 (702)
Q Consensus 641 ~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~ 680 (702)
+++.++..+-+.. ....|+.+|+.+++...
T Consensus 234 ~l~~~~~~~~~~~----------~~~~It~~~v~~~~~~~ 263 (353)
T 1sxj_D 234 LLQSASKGAQYLG----------DGKNITSTQVEELAGVV 263 (353)
T ss_dssp HHHHTHHHHHHHC----------SCCCCCHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCc----------cCccccHHHHHHHhCCC
Confidence 4444433221110 01158888888887744
No 123
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.55 E-value=3.5e-14 Score=149.95 Aligned_cols=162 Identities=19% Similarity=0.312 Sum_probs=112.1
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech------hhh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISAT------EVV 195 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~------~l~ 195 (702)
.+++++|++.+++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++. ++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 478899999999888766532 35899999999999999999999999999998874 222
Q ss_pred cccccccHHHHHHHHHHHHhhC---CceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYRTA---PSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~~~---p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
........ ...|. ...+ .+||||||+|.+... ....|+..+++....+. + ...
T Consensus 90 g~~~~~~~---~~~~~--~~~g~l~~~vl~iDEi~~~~~~-----------~~~~Ll~~l~~~~~~~~-g-------~~~ 145 (331)
T 2r44_A 90 GTMIYNQH---KGNFE--VKKGPVFSNFILADEVNRSPAK-----------VQSALLECMQEKQVTIG-D-------TTY 145 (331)
T ss_dssp EEEEEETT---TTEEE--EEECTTCSSEEEEETGGGSCHH-----------HHHHHHHHHHHSEEEET-T-------EEE
T ss_pred CceeecCC---CCceE--eccCcccccEEEEEccccCCHH-----------HHHHHHHHHhcCceeeC-C-------EEE
Confidence 21110000 00000 0011 269999999987533 33456677775432221 1 011
Q ss_pred CCCCeEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC
Q 045279 273 SKPGYVLVIGATNRPD-----AVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN 324 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~-----~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~ 324 (702)
..+.+++||+|+|+.+ .+++++++ ||...+.++.|+.+++.+|++..+..
T Consensus 146 ~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 146 PLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp ECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred ECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1234588999999654 38999999 99888999999999999999887654
No 124
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.55 E-value=1.8e-14 Score=150.98 Aligned_cols=186 Identities=19% Similarity=0.212 Sum_probs=126.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l 194 (702)
+.+|++++|++.+++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 34899999999999998866521 122349999999999999999999986 345778888764
Q ss_pred hcccccccHHHHHHHHHHH-H-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKA-Y-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a-~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
.. .......+....... . ...+.+++|||+|.+.... .+.|+..++.
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~-----------~~~L~~~le~------------------ 128 (319)
T 2chq_A 80 RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA-----------QAALRRTMEM------------------ 128 (319)
T ss_dssp TC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHH-----------HHTTGGGTSS------------------
T ss_pred cC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHH-----------HHHHHHHHHh------------------
Confidence 22 111112222211010 0 1346799999999886421 2234444432
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l 351 (702)
.+.++++|++||.+..+.+++++ |+ ..+.|++|+.+++.+++...+.......+. .+..++..+.| +.+.+.++
T Consensus 129 -~~~~~~~i~~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~ 203 (319)
T 2chq_A 129 -YSKSCRFILSCNYVSRIIEPIQS--RC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINA 203 (319)
T ss_dssp -SSSSEEEEEEESCGGGSCHHHHT--TC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHH
T ss_pred -cCCCCeEEEEeCChhhcchHHHh--hC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 23458899999999999999999 98 589999999999999999888766544332 35567766655 55555554
Q ss_pred HHH
Q 045279 352 ANK 354 (702)
Q Consensus 352 ~~~ 354 (702)
++.
T Consensus 204 l~~ 206 (319)
T 2chq_A 204 LQG 206 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=7.2e-14 Score=150.34 Aligned_cols=222 Identities=18% Similarity=0.177 Sum_probs=143.3
Q ss_pred ccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEecccccc
Q 045279 428 WEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGPELLN 501 (702)
Q Consensus 428 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~l~~ 501 (702)
.+++.|.+...+.+...+...+ ....+.+++|+||||||||++++.+++.+ +.+++.+++.....
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~---------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY---------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG---------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCChHHHHHHHHHHHHHHH---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 3667888877776655442211 11446689999999999999999999988 88999998764321
Q ss_pred c----------------CcCchHH-HHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCC
Q 045279 502 K----------------YVGESEL-AVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKR 563 (702)
Q Consensus 502 ~----------------~~g~~~~-~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~ 563 (702)
. ..+.+.. ....++....... |.||||||++.+....+ ..++..++..++.. ..
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~-~~ 161 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV-NK 161 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC-CC
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc-CC
Confidence 1 1222222 2444454444433 89999999999985432 24566666666544 34
Q ss_pred CcEEEEEecCCC---CccCccccCCCccc-eEEEcCCCCHHHHHHHHHHHhccCC--CC-CCCCHHHHhhhhcCC--CCC
Q 045279 564 KGVFVIGATNRP---DVMDRAVLRPGRFG-KLLYVPLPTPDERGLILEALARKKP--ID-DSVDLHTIAQSKFCE--NLS 634 (702)
Q Consensus 564 ~~~~vI~atn~~---~~ld~a~~r~gRf~-~~i~~~~p~~~~r~~il~~~~~~~~--~~-~~~~~~~la~~~~~~--~~s 634 (702)
.++.+|++||.+ ..+++.+.+ ||. ..+.+++++.++...|+...+.... .. .+..++.++. ++. .-+
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~G~ 237 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAA--LAAREHGD 237 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHH--HHHHTTCC
T ss_pred CeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH--HHHHhcCC
Confidence 578888899876 467778877 775 4899999999999999998776321 11 1222344442 222 124
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 635 GADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 635 g~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
.+.+.++|+.|+..|..+. ...|+.+|+..|+....
T Consensus 238 ~r~~~~ll~~a~~~a~~~~-----------~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 238 ARRALDLLRVSGEIAERMK-----------DTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------CSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcC-----------CCccCHHHHHHHHHHHh
Confidence 4566677777766554331 12688888888876653
No 126
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3.5e-14 Score=151.18 Aligned_cols=184 Identities=17% Similarity=0.216 Sum_probs=127.5
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEechh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG------VPFYKISATE 193 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~------~~~~~i~~~~ 193 (702)
+.+|++++|.+++++.+...+.. ....++||+||||||||++++++++.++ ..++.+++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 34899999999999999876621 1224499999999999999999998864 4677788765
Q ss_pred hhcccccccHHHHHHHHHHHH----------------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 194 VVSGVSGASEENIRDLFSKAY----------------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 194 l~~~~~g~~~~~~~~~f~~a~----------------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
... ...+...+.... ...+.||||||+|.+.... ...|+..+++..
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~-----------~~~Ll~~le~~~- 161 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA-----------QSALRRTMETYS- 161 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHTT-
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHH-----------HHHHHHHHHhcC-
Confidence 311 111122111111 1234599999999886432 234666676532
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHH
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKI 336 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~l 336 (702)
.++.+|.+||.+..+++++++ |+ ..+.|++|+.++...++...+........ ..+..+
T Consensus 162 ------------------~~~~~il~~~~~~~l~~~l~s--R~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l 220 (353)
T 1sxj_D 162 ------------------GVTRFCLICNYVTRIIDPLAS--QC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERI 220 (353)
T ss_dssp ------------------TTEEEEEEESCGGGSCHHHHH--HS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred ------------------CCceEEEEeCchhhCcchhhc--cC-ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 236777888999999999999 98 47999999999999999988765544322 346667
Q ss_pred HhhCCCCCHHHHHHHHHHHH
Q 045279 337 ARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 337 a~~t~g~~~~dl~~l~~~a~ 356 (702)
+..+.| +.+.+.++++.+.
T Consensus 221 ~~~~~G-~~r~~~~~l~~~~ 239 (353)
T 1sxj_D 221 LDISAG-DLRRGITLLQSAS 239 (353)
T ss_dssp HHHTSS-CHHHHHHHHHHTH
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 777776 4555555555443
No 127
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.54 E-value=1.1e-14 Score=139.77 Aligned_cols=150 Identities=26% Similarity=0.379 Sum_probs=108.0
Q ss_pred ccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeEEEEe
Q 045279 426 VKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANFIHIK 495 (702)
Q Consensus 426 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~~~i~ 495 (702)
..|+++.|.+...+.+.+.+ ....+.+++|+||||||||++|+.++..+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l-------------~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQIL-------------SRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHH-------------TSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHH-------------hCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 35777888887666554433 11346789999999999999999999987 78888888
Q ss_pred ccccc--ccCcCchHHHHHHHHHHHHhC-CCeEEEEeCcchhhcccC-CCCchHHHHHHHHHHHhhhCCCCCCcEEEEEe
Q 045279 496 GPELL--NKYVGESELAVRTLFSRARTC-SPCILFFDEVDALTTKRG-KEGGWVVERLLNQLLIELDGADKRKGVFVIGA 571 (702)
Q Consensus 496 ~~~l~--~~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~r~-~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~a 571 (702)
+..+. ..+.+.....++.++..+... .+.||||||+|.+.+.+. .... ..+.+.|...++ ..++++|++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~~l~~~~~----~~~~~ii~~ 158 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA---LDAGNILKPMLA----RGELRCIGA 158 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS---CCTHHHHHHHHH----TTCSCEEEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc---hHHHHHHHHHHh----cCCeeEEEe
Confidence 87765 335566666777888777654 678999999999986554 1111 223333333343 345778889
Q ss_pred cCCCC-----ccCccccCCCccceEEEcCCCC
Q 045279 572 TNRPD-----VMDRAVLRPGRFGKLLYVPLPT 598 (702)
Q Consensus 572 tn~~~-----~ld~a~~r~gRf~~~i~~~~p~ 598 (702)
||.+. .+++++.+ ||+ .+.++.|+
T Consensus 159 ~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 159 TTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp ECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred cCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 98765 68999999 998 58999885
No 128
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.53 E-value=4e-13 Score=171.58 Aligned_cols=366 Identities=16% Similarity=0.187 Sum_probs=198.8
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ 237 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 237 (702)
..++++.||+|||||++++++|+.+|.+++.++|++-. ....+..+|..+... +.++++||++.+.......
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~l------d~~~lg~~~~g~~~~-Gaw~~~DE~nr~~~evLs~- 716 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSF------DYQVLSRLLVGITQI-GAWGCFDEFNRLDEKVLSA- 716 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSC------CHHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCC------ChhHhhHHHHHHHhc-CCEeeehhhhhcChHHHHH-
Confidence 45799999999999999999999999999999998743 345567777777554 3699999998776432111
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC----CCCCCccccCCCCcceEEEeCCCCHHH
Q 045279 238 REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR----PDAVDPALRRPGRFDREIVLGVPDENA 313 (702)
Q Consensus 238 ~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~----~~~ld~al~r~~Rf~~~i~~~~p~~~e 313 (702)
....+..+...+.+....+...+ .....+..+.|++|+|+ ...+++++++ || +.+.+..|+.+.
T Consensus 717 ---l~~~l~~i~~al~~~~~~i~~~g------~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 717 ---VSANIQQIQNGLQVGKSHITLLE------EETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp ---HHHHHHHHHHHHHHTCSEEECSS------SEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred ---HHHHHHHHHHHHHcCCcEEeeCC------cEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 11122223333332221111111 11112334788899995 4479999999 99 789999999998
Q ss_pred HHHHHHHhhcCcc---cC-CcccHHHHH-hh-----CCCCCHHHHHHHHHHHHHHHHHH-----HHHhhhhccccCcccc
Q 045279 314 RVQILSVLTRNLR---VE-GSFDLVKIA-RS-----TPGFVGADLAALANKAGNLAMKR-----IIDQRKSELSGNSIAE 378 (702)
Q Consensus 314 r~~Il~~~~~~~~---~~-~~~~~~~la-~~-----t~g~~~~dl~~l~~~a~~~a~~r-----~~~~~~~~~~~~~~~~ 378 (702)
..+|+-....-.. +. ....+-.++ .. .-.|..+.++.++..|....... ++-+...
T Consensus 785 i~ei~l~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr~~~~e~~~l~~al~--------- 855 (2695)
T 4akg_A 785 IAEMILQIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVESLK--------- 855 (2695)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHHHSCSSHHHHHHHHH---------
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhccCCcHHHHHHHHHH---------
Confidence 8887632211100 00 001111111 11 23467888888887665432111 0000000
Q ss_pred ccCcccccCCCChhhhhhhcccHhH---HHHHHhccCCCCcCccccccCCccccccCCcccchhhhHHHHHH--------
Q 045279 379 QHSDDWWRQPWLPEEMERLTITMTD---FEEATKMVQPSSRREGFSAIPNVKWEDVGGLDYLRHEFDRYIVR-------- 447 (702)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~i~~~d---~~~~l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~-------- 447 (702)
+ ..-..+..+| |...+..+.|... .| .+...+...+.+.+..
T Consensus 856 ----~----------~~lpk~~~~D~~lf~~li~dlFp~~~------~~-------~~~~~l~~~i~~~~~~~~l~~~~~ 908 (2695)
T 4akg_A 856 ----R----------VILPSLGDTDELVFKDELSKIFDSAG------TP-------LNSKAIVQCLKDAGQRSGFSMSEE 908 (2695)
T ss_dssp ----H----------HTGGGCCHHHHHHHHHHHHHHCCCCS------CC-------SSSSHHHHHHHHHHHHHTCCCCHH
T ss_pred ----H----------hccccCchhhHHHHHHHHHHhCCCCC------CC-------CChHHHHHHHHHHHHHcCCcccHH
Confidence 0 0000111222 3333333333221 11 2333444444433321
Q ss_pred -HhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----CC--eEEEEecc-----cccccCcCc----hHHHH
Q 045279 448 -RIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----GA--NFIHIKGP-----ELLNKYVGE----SELAV 511 (702)
Q Consensus 448 -~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~--~~~~i~~~-----~l~~~~~g~----~~~~~ 511 (702)
..+..+++.-. ....|++|+||||||||++.+++|..+ +. .+..+++. ++++.+-.. ....+
T Consensus 909 ~~~K~~ql~e~~--~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~t~~el~G~~d~~t~eW~DGil 986 (2695)
T 4akg_A 909 FLKKCMQFYYMQ--KTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVLTKESLYGSMLKATLEWRDGLF 986 (2695)
T ss_dssp HHHHHHHHHHHH--HHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTSCHHHHTTEECTTTCCEECCSH
T ss_pred HHHHHHHHHHHH--HhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHhcceecCCCCeEecChH
Confidence 11112222222 234789999999999999999999864 22 23445543 333322111 11123
Q ss_pred HHHHHHHHhC-------CCeEEEEeC-cchhhcccCCCCchHHHHHHHHHHHhhhCC-----------CCCCcEEEEEec
Q 045279 512 RTLFSRARTC-------SPCILFFDE-VDALTTKRGKEGGWVVERLLNQLLIELDGA-----------DKRKGVFVIGAT 572 (702)
Q Consensus 512 ~~~f~~a~~~-------~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ll~~l~~~-----------~~~~~~~vI~at 572 (702)
-.++.++... ....|+||- +|..- -+-+|.+| |+. .-..++-+|+-+
T Consensus 987 s~~~R~~~~~~~~~~~~~~~WivfDG~vD~~W-----------IE~LNsVL---DDNk~L~L~ngErI~l~~~~~llFEv 1052 (2695)
T 4akg_A 987 TSILRRVNDDITGTFKNSRIWVVFDSDLDPEY-----------VEAMNSVL---DDNKILTLPNGERLPIPPNFRILFET 1052 (2695)
T ss_dssp HHHHHHHHTCCCSSCSSEEEEEEECSCCCHHH-----------HHTTHHHH---STTCEEECSSSCEEECCSSCEEEEEE
T ss_pred HHHHHHHHhccccccCCCCeEEEECCCCCHHH-----------HHHHHHHh---cCCCccccCCCCEEecCCCcEEEEEe
Confidence 3344443221 135899993 44333 34455554 331 123456677778
Q ss_pred CCCCccCccccCCCccceEEEcCCCC
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPT 598 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~ 598 (702)
.......||..+ |+. .|++.+-+
T Consensus 1053 ~dL~~ASPATVS--RcG-mvy~~~~~ 1075 (2695)
T 4akg_A 1053 DNLDHTTPATIT--RCG-LLWFSTDV 1075 (2695)
T ss_dssp SCCTTSCHHHHH--HSE-EEECCSCS
T ss_pred cccccCCcccee--eee-EEEecCCc
Confidence 888888999988 886 66666543
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=9.2e-14 Score=146.12 Aligned_cols=186 Identities=23% Similarity=0.275 Sum_probs=126.0
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG-----VPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~-----~~~~~i~~~~l 194 (702)
+.+|++++|++.+++.+...+.. + ...++||+||||||||++|+++++.+. ..++.+++++.
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 34899999999999999977732 1 223599999999999999999999863 24677777653
Q ss_pred hcccccccHHHHHHHHHHH-H-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKA-Y-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASD 272 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a-~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~ 272 (702)
... ......+....... . ...+.+++|||+|.+... ....|+..++..
T Consensus 88 ~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~----------------- 137 (327)
T 1iqp_A 88 RGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEMF----------------- 137 (327)
T ss_dssp HHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHT-----------------
T ss_pred Cch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------HHHHHHHHHHhc-----------------
Confidence 211 01111111111000 0 134679999999988642 234466666652
Q ss_pred CCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHHHHHHH
Q 045279 273 SKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGADLAAL 351 (702)
Q Consensus 273 ~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~dl~~l 351 (702)
+.++.+|++||.+..+.+++.+ |+ ..+.|++|+.++..+++...+........ ..+..++..+.| +.+.+.++
T Consensus 138 --~~~~~~i~~~~~~~~l~~~l~s--r~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~ 211 (327)
T 1iqp_A 138 --SSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINI 211 (327)
T ss_dssp --TTTEEEEEEESCGGGSCHHHHH--TE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHH
T ss_pred --CCCCeEEEEeCCccccCHHHHh--hC-cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHH
Confidence 2347888899999999999999 98 47999999999999999988766544322 235556666655 55555555
Q ss_pred HHH
Q 045279 352 ANK 354 (702)
Q Consensus 352 ~~~ 354 (702)
++.
T Consensus 212 l~~ 214 (327)
T 1iqp_A 212 LQA 214 (327)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 130
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=6.4e-14 Score=147.09 Aligned_cols=182 Identities=16% Similarity=0.172 Sum_probs=128.2
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhh
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEV 194 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l 194 (702)
+.+|++++|++.+++.+.+.+.. + .. .+++|+||||||||++|+++++.+ +..++.+++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-----------G-NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-----------C-CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 34799999999999999887632 1 22 339999999999999999999986 345677776652
Q ss_pred hcccccccHHHHHHHHHHHH-------hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 195 VSGVSGASEENIRDLFSKAY-------RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 195 ~~~~~g~~~~~~~~~f~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
. ....++.++.... .+.+.+++|||+|.+.... .+.|+..++..
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------~~~L~~~le~~------------ 134 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGA-----------QQALRRTMELY------------ 134 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHH-----------HHTTHHHHHHT------------
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHH-----------HHHHHHHHhcc------------
Confidence 1 1234455555544 2347799999999886421 33466666642
Q ss_pred CCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCc-ccHHHHHhhCCCCCHH
Q 045279 268 SDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGS-FDLVKIARSTPGFVGA 346 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~-~~~~~la~~t~g~~~~ 346 (702)
+.++.+|++||.+..+.+.+++ |+ ..+.|++|+.++..+++...+........ ..+..++..+.| +.+
T Consensus 135 -------~~~~~~il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r 203 (323)
T 1sxj_B 135 -------SNSTRFAFACNQSNKIIEPLQS--QC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMR 203 (323)
T ss_dssp -------TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHH
T ss_pred -------CCCceEEEEeCChhhchhHHHh--hc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 2347888899999999999999 88 58999999999999999987765443322 235566666655 444
Q ss_pred HHHHHHHH
Q 045279 347 DLAALANK 354 (702)
Q Consensus 347 dl~~l~~~ 354 (702)
.+.++++.
T Consensus 204 ~a~~~l~~ 211 (323)
T 1sxj_B 204 QAINNLQS 211 (323)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 131
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.52 E-value=1.2e-13 Score=148.19 Aligned_cols=185 Identities=22% Similarity=0.281 Sum_probs=131.2
Q ss_pred CccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC---------------
Q 045279 425 NVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA--------------- 489 (702)
Q Consensus 425 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--------------- 489 (702)
+..|++++|.+.+++.+...+.. + ..+..++|+||+|||||++|+++++.++.
T Consensus 12 p~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 79 (373)
T 1jr3_A 12 PQTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNC 79 (373)
T ss_dssp CCSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHH
T ss_pred CCchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 34678899999988888776532 1 23456899999999999999999998754
Q ss_pred ---------eEEEEecccccccCcCchHHHHHHHHHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHh
Q 045279 490 ---------NFIHIKGPELLNKYVGESELAVRTLFSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIE 556 (702)
Q Consensus 490 ---------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~ 556 (702)
.++.++.+.. .....++.++..+.. ..+.||||||+|.+. ...++.|+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~Ll~~ 142 (373)
T 1jr3_A 80 REIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------RHSFNALLKT 142 (373)
T ss_dssp HHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------HHHHHHHHHH
T ss_pred HHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------HHHHHHHHHH
Confidence 1233333210 111235566666542 346899999999997 6678888888
Q ss_pred hhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCH
Q 045279 557 LDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSG 635 (702)
Q Consensus 557 l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg 635 (702)
++.. ..++++|++|+.+..+.+++.+ |+ ..+.|++|+.++...++...+++.+...+ ..++.++ ..+.| +.
T Consensus 143 le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~--~~~~G-~~ 214 (373)
T 1jr3_A 143 LEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA--RAAEG-SL 214 (373)
T ss_dssp HHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHH--HHSSS-CH
T ss_pred HhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHCCC-CH
Confidence 8753 4577888889988899999988 87 68999999999999999998876554322 2245555 33433 55
Q ss_pred HHHHHHHHHHH
Q 045279 636 ADLAAMMNEAA 646 (702)
Q Consensus 636 ~dl~~~~~~a~ 646 (702)
+++.++++.+.
T Consensus 215 r~~~~~l~~~~ 225 (373)
T 1jr3_A 215 RDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666554
No 132
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=3.2e-14 Score=149.62 Aligned_cols=167 Identities=23% Similarity=0.299 Sum_probs=120.7
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+..|++++|.+.+++.+...+.. + ...+++|+||||||||++|+++++.+. ..++.+++++
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 455788999999988888765532 1 223599999999999999999999863 3477777765
Q ss_pred ccccCcCchHHHHHHHHHH-HH-----hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLFSR-AR-----TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~-a~-----~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
..+ ...++..+.. +. ...+.||||||+|.+. ...++.|+..++.. ..++.+|++|
T Consensus 87 ~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~L~~~le~~--~~~~~~i~~~ 147 (327)
T 1iqp_A 87 ERG------INVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDAQQALRRTMEMF--SSNVRFILSC 147 (327)
T ss_dssp HHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred cCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHHHHHHHHHHHhc--CCCCeEEEEe
Confidence 422 1112222221 11 1457899999999997 56678888888753 3467788889
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC-CCCHHHHh
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD-SVDLHTIA 625 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~~~la 625 (702)
|.+..+.+++.+ |+. .+.|++|+.++...++...+...+... +..++.++
T Consensus 148 ~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 198 (327)
T 1iqp_A 148 NYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAIL 198 (327)
T ss_dssp SCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHH
T ss_pred CCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 999999999988 886 889999999999999998887665432 22345555
No 133
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=1.3e-13 Score=148.51 Aligned_cols=195 Identities=21% Similarity=0.221 Sum_probs=129.0
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CCCeEEEec
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET-----------GVPFYKISA 191 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-----------~~~~~~i~~ 191 (702)
.++++|.++.++.+...+...+. -..+.+++|+||||||||++++++++.+ +.+++.++|
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 48899999999999987754332 2345689999999999999999999987 889999998
Q ss_pred hhhh-cc-----------------cccccHHH-HHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 192 TEVV-SG-----------------VSGASEEN-IRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 192 ~~l~-~~-----------------~~g~~~~~-~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
.... .. ..+..... +..++..+. ..+.+|||||+|.+...... .. ++..+
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~-------~~---~l~~l 158 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGG-------DI---VLYQL 158 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTS-------HH---HHHHH
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCC-------ce---eHHHH
Confidence 7653 11 11221222 333333332 33339999999998754211 11 12222
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcC-c-cc
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRN-L-RV 327 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~-~-~~ 327 (702)
-.. ..++.+|++||.+ +.+++++++ ||...+.|++|+.++..+|+...+.. . ..
T Consensus 159 ~~~-------------------~~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~ 217 (384)
T 2qby_B 159 LRS-------------------DANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKG 217 (384)
T ss_dssp HTS-------------------SSCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTT
T ss_pred hcC-------------------CcceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccC
Confidence 211 0248899999986 688999998 98779999999999999999987653 1 11
Q ss_pred C-CcccHHHHHhhCCC--CCHHHHHHHHHHHHHH
Q 045279 328 E-GSFDLVKIARSTPG--FVGADLAALANKAGNL 358 (702)
Q Consensus 328 ~-~~~~~~~la~~t~g--~~~~dl~~l~~~a~~~ 358 (702)
. ....+..+++.+.+ .+.+.+.+++..|...
T Consensus 218 ~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 218 TYDDEILSYIAAISAKEHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp SCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 1 12234455555441 2455666666665443
No 134
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.50 E-value=6.3e-13 Score=140.31 Aligned_cols=207 Identities=22% Similarity=0.290 Sum_probs=134.5
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccc
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~ 201 (702)
+|++++|.+.+++.+...+..... .-.+..+++|+|||||||||+++++|+.++.++...++..+..
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~--------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----- 89 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKM--------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----- 89 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH--------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-----
Confidence 799999999999888766632111 0123467999999999999999999999999887766544321
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEE
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVI 281 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI 281 (702)
...+..++.. ...+.|+||||+|.+... ..+.|+..++.....+..+........ ......+.++
T Consensus 90 -~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i-~~~l~~~~li 154 (334)
T 1in4_A 90 -QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSI-RIDIQPFTLV 154 (334)
T ss_dssp -HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC----------------CCCEEE
T ss_pred -HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccc-cccCCCeEEE
Confidence 1223333322 124569999999988641 122233444432110000000000000 0011236778
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-cHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 045279 282 GATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF-DLVKIARSTPGFVGADLAALANKAGNLA 359 (702)
Q Consensus 282 ~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~-~~~~la~~t~g~~~~dl~~l~~~a~~~a 359 (702)
++|+.+..+++++++ ||...+.+++|+.+++.+|++...+......+. .+..++..+.| +++.+..+++.+...+
T Consensus 155 ~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a 230 (334)
T 1in4_A 155 GATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 230 (334)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHH
Confidence 899999999999999 998788999999999999999887655544333 36667777776 5678888887765544
No 135
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.50 E-value=4.2e-14 Score=155.73 Aligned_cols=205 Identities=15% Similarity=0.102 Sum_probs=124.6
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC--CeEEEEec-----cccccc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG--ANFIHIKG-----PELLNK 502 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~--~~~~~i~~-----~~l~~~ 502 (702)
.+.|.+.+++.+...+. .+.++||+||||||||++|+++|..++ .+|..+.+ +++++.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 46777877765544321 235899999999999999999999884 35555544 334443
Q ss_pred CcCchHHHHHHHHHHHHhC---CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC--------CCCcEEEEEe
Q 045279 503 YVGESELAVRTLFSRARTC---SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD--------KRKGVFVIGA 571 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~---~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~a 571 (702)
+.+..... ...|..+... .++|||||||+.+. ..+++.|+..|+... .....++|+|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 33322111 1223222221 46799999999877 788899999886421 1122356778
Q ss_pred cCCCC---ccCccccCCCccceEEEcCCCCH-HHHHHHHHHHhccCC-----------------------CCCCC-CHHH
Q 045279 572 TNRPD---VMDRAVLRPGRFGKLLYVPLPTP-DERGLILEALARKKP-----------------------IDDSV-DLHT 623 (702)
Q Consensus 572 tn~~~---~ld~a~~r~gRf~~~i~~~~p~~-~~r~~il~~~~~~~~-----------------------~~~~~-~~~~ 623 (702)
||.+. .+.+++++ ||...+.+|+|+. +++..|++....... +..+. -++.
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~ 233 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFEL 233 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHH
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHH
Confidence 88632 24468888 9999999999987 678888876543110 00011 1233
Q ss_pred Hhhhh-------cCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHH
Q 045279 624 IAQSK-------FCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFE 674 (702)
Q Consensus 624 la~~~-------~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~ 674 (702)
++... ...+.|.+.+..+++.|...|.-+... .|+.+|+.
T Consensus 234 i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~-----------~Vt~eDv~ 280 (500)
T 3nbx_X 234 IFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRS-----------AVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCS-----------BCCGGGGG
T ss_pred HHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCc-----------cccchHHH
Confidence 33211 123778888888888777666655432 56666666
No 136
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.50 E-value=2.7e-13 Score=145.45 Aligned_cols=184 Identities=24% Similarity=0.324 Sum_probs=131.0
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------- 185 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------- 185 (702)
.+|++++|.+.+++.+...+.. + +.++.+||+||||||||++++++++.++..
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 3799999999999999987732 1 234578999999999999999999988642
Q ss_pred ---------eEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHH
Q 045279 186 ---------FYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCM 252 (702)
Q Consensus 186 ---------~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l 252 (702)
++.++... ......++.++..+. .+.+.|++|||+|.+... ..+.|+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~Ll~~l 143 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-----------SFNALLKTL 143 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-----------HHHHHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH-----------HHHHHHHHH
Confidence 22222211 011123455555543 234679999999988532 234566666
Q ss_pred hhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcc-
Q 045279 253 DESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSF- 331 (702)
Q Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~- 331 (702)
++ .+.++++|++|+.+..+.+.+++ |+ ..+.|++|+.++..+++...++........
T Consensus 144 e~-------------------~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 201 (373)
T 1jr3_A 144 EE-------------------PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPR 201 (373)
T ss_dssp HS-------------------CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHH
T ss_pred hc-------------------CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 64 24458899999988899999998 88 789999999999999999887665443322
Q ss_pred cHHHHHhhCCCCCHHHHHHHHHHHH
Q 045279 332 DLVKIARSTPGFVGADLAALANKAG 356 (702)
Q Consensus 332 ~~~~la~~t~g~~~~dl~~l~~~a~ 356 (702)
.+..++..+.| +.+.+.++++.+.
T Consensus 202 a~~~l~~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 202 ALQLLARAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHSSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 35667777766 7777777776653
No 137
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.50 E-value=3.4e-14 Score=145.09 Aligned_cols=202 Identities=14% Similarity=0.130 Sum_probs=116.6
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhhhcc
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISATEVVSG 197 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l~~~ 197 (702)
.+|++++|.+..+..+.+.+.... ..+.++||+||||||||++|+++++.+. .+|+.++|+.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 379999999999999887774422 2346899999999999999999999875 68999999876332
Q ss_pred c-----ccccHH-------HHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 045279 198 V-----SGASEE-------NIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQK 265 (702)
Q Consensus 198 ~-----~g~~~~-------~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~ 265 (702)
. .|.... ...+.|..+ .+++||||||+.+... ....|+..++.... ...++.
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~-~~~g~~- 135 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-----------VQEKLLRVIEYGEL-ERVGGS- 135 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEE-CCCCC--
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-----------HHHHHHHHHHhCCe-ecCCCc-
Confidence 1 111000 011233333 3469999999988643 23456666664321 111111
Q ss_pred CCCCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHH----HHHHHHHhhcC----cccC--
Q 045279 266 SKSDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENA----RVQILSVLTRN----LRVE-- 328 (702)
Q Consensus 266 ~~~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~e----r~~Il~~~~~~----~~~~-- 328 (702)
...+.++.+|+|||.. ..+++.+.+ ||.. +.+..|+..+ ...++..++.. ....
T Consensus 136 ------~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~ 206 (265)
T 2bjv_A 136 ------QPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLF 206 (265)
T ss_dssp -------CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ------ccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 1112348899999984 247788888 8843 4555555544 34444444322 2221
Q ss_pred --Cc-ccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 329 --GS-FDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 329 --~~-~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
.. ..+..+....-..+.++|.+++..++..
T Consensus 207 ~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 207 PGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp CCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 11 1233444443334678888888876543
No 138
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.50 E-value=3.9e-14 Score=144.58 Aligned_cols=194 Identities=19% Similarity=0.208 Sum_probs=118.0
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC---CeEEEEecccccccC
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG---ANFIHIKGPELLNKY 503 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~---~~~~~i~~~~l~~~~ 503 (702)
+|++++|.+.....+.+.+.... ..+.+++|+||||||||++|++++..+. .+|+.++++.+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 57788888887777666554432 2346899999999999999999999874 689999998763211
Q ss_pred -----cCchHH----H---HHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------C
Q 045279 504 -----VGESEL----A---VRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------K 562 (702)
Q Consensus 504 -----~g~~~~----~---~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~ 562 (702)
.|.... . ....|..+ .+++|||||++.+. ...+..|+..|+... .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAP-----------MMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSC-----------HHHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcC-----------HHHHHHHHHHHHhCCeecCCCcccc
Confidence 111000 0 01123222 46899999999998 667778887776421 1
Q ss_pred CCcEEEEEecCCC-------CccCccccCCCccc-eEEEcCCCCH--HHHHHHHHHHhcc----CCCCC--CCCHHHHhh
Q 045279 563 RKGVFVIGATNRP-------DVMDRAVLRPGRFG-KLLYVPLPTP--DERGLILEALARK----KPIDD--SVDLHTIAQ 626 (702)
Q Consensus 563 ~~~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i~~~~p~~--~~r~~il~~~~~~----~~~~~--~~~~~~la~ 626 (702)
..++.||+|||.+ ..+++++.+ ||. ..+.+|++.. ++...+++.+++. .+... ...-+.+.
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~- 215 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE- 215 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH-
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH-
Confidence 2457889999974 246788877 886 3566666654 4555565555443 22211 22222222
Q ss_pred hhc-CCCCCH--HHHHHHHHHHHHHH
Q 045279 627 SKF-CENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 627 ~~~-~~~~sg--~dl~~~~~~a~~~a 649 (702)
.+ ...|.| ++|+++++.++..+
T Consensus 216 -~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 216 -TLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp -HHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred -HHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 11 134544 78889988877543
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=2.7e-13 Score=144.49 Aligned_cols=185 Identities=18% Similarity=0.213 Sum_probs=123.0
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCC--------------
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-------------- 489 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-------------- 489 (702)
.+..|+++.|.+.+.+.+...+. . ....+ +++|+||+|+|||++++++++.+..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~----------~-~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSD----------Q-PRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTT----------C-TTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHh----------h-CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 45578899999888776665430 0 11223 3999999999999999999996411
Q ss_pred ---------------eEEEEecccccccCcCchHHHHHHHHHHHH--------------hCCCeEEEEeCcchhhcccCC
Q 045279 490 ---------------NFIHIKGPELLNKYVGESELAVRTLFSRAR--------------TCSPCILFFDEVDALTTKRGK 540 (702)
Q Consensus 490 ---------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------------~~~~~vl~iDEid~l~~~r~~ 540 (702)
.++.++.++.. ......++.++..+. ...|.||+|||++.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 12233322210 011113455554432 2367799999999976
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCC--C
Q 045279 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDD--S 618 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~ 618 (702)
....+.|+..|+... .++.+|++||.++.+.+++.+ |+ ..+.|++|+.+++..+++..+++.++.. +
T Consensus 148 ------~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 216 (354)
T 1sxj_E 148 ------KDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETK 216 (354)
T ss_dssp ------HHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCS
T ss_pred ------HHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcH
Confidence 566778888887653 357788889999999999988 88 7899999999999999999887655432 3
Q ss_pred CCHHHHhhhhcCCCCCHHHHHHHHHHHH
Q 045279 619 VDLHTIAQSKFCENLSGADLAAMMNEAA 646 (702)
Q Consensus 619 ~~~~~la~~~~~~~~sg~dl~~~~~~a~ 646 (702)
..++.++.. +++|+|.+++...
T Consensus 217 ~~l~~i~~~------~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 217 DILKRIAQA------SNGNLRVSLLMLE 238 (354)
T ss_dssp HHHHHHHHH------HTTCHHHHHHHHT
T ss_pred HHHHHHHHH------cCCCHHHHHHHHH
Confidence 345666632 3445555554433
No 140
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=4.2e-14 Score=160.06 Aligned_cols=224 Identities=15% Similarity=0.110 Sum_probs=136.9
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE----ecccccccCc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI----KGPELLNKYV 504 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i----~~~~l~~~~~ 504 (702)
..+.|++.+|+.+.-.+... ..........+...++||+||||||||++|+++|..++..++.. ++.++....+
T Consensus 295 ~~I~G~e~vk~al~~~l~~g--~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG--VPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC--CCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCC--CcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 55788888877653322110 00000001123334899999999999999999999887665442 2233332221
Q ss_pred CchHHH----HHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----------CCCcEEEE
Q 045279 505 GESELA----VRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----------KRKGVFVI 569 (702)
Q Consensus 505 g~~~~~----~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~~vI 569 (702)
...... ....+..| .++||||||+|.+. ...++.|+..|+... ...++.||
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~-----------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMR-----------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCC-----------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCC-----------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 110000 01122333 45899999999997 667788888887532 13467899
Q ss_pred EecCCCC-------------ccCccccCCCccce-EEEcCCCCHHHHHHHHHHHhccCCC--------------------
Q 045279 570 GATNRPD-------------VMDRAVLRPGRFGK-LLYVPLPTPDERGLILEALARKKPI-------------------- 615 (702)
Q Consensus 570 ~atn~~~-------------~ld~a~~r~gRf~~-~i~~~~p~~~~r~~il~~~~~~~~~-------------------- 615 (702)
+|||.+. .+++++++ |||. .+..+.|+.+ ...|.++.+.....
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999876 89999999 9985 5556667777 77788776654221
Q ss_pred ------CCCCCHHHHhhhhc------------CCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 616 ------DDSVDLHTIAQSKF------------CENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 616 ------~~~~~~~~la~~~~------------~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
-.+...+.+..... .-+.+.+.+.++++.|...|..+.. ..|+.+|+..|+
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~-----------~~V~~~dv~~Ai 584 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALK-----------AEVTREDAERAI 584 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS-----------CCSSHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc-----------CCCCHHHHHHHH
Confidence 11112222332100 1256778888888877765544332 278999999998
Q ss_pred hhcCC
Q 045279 678 SKISP 682 (702)
Q Consensus 678 ~~~~~ 682 (702)
.-+..
T Consensus 585 ~l~~~ 589 (595)
T 3f9v_A 585 NIMRL 589 (595)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 141
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.46 E-value=9.9e-14 Score=144.28 Aligned_cols=198 Identities=19% Similarity=0.234 Sum_probs=122.3
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc---
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG--- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~--- 197 (702)
++|+|.+..++.+.+.+... .....+|||+||||||||++|++|+... +.+|+.++|+.+...
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~ 70 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLE 70 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHH
Confidence 36889999999888877442 2445789999999999999999999965 578999999876432
Q ss_pred ----------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 045279 198 ----------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSK 267 (702)
Q Consensus 198 ----------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~ 267 (702)
+.|... .....|..+. +++||||||+.+... ....|+..++.... ...|+.
T Consensus 71 ~~lfg~~~g~~tg~~~-~~~g~~~~a~---~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~-~~~g~~--- 131 (304)
T 1ojl_A 71 SELFGHEKGAFTGADK-RREGRFVEAD---GGTLFLDEIGDISPL-----------MQVRLLRAIQEREV-QRVGSN--- 131 (304)
T ss_dssp HHHTCCCSSCCC---C-CCCCHHHHHT---TSEEEEESCTTCCHH-----------HHHHHHHHHHSSBC-CBTTBC---
T ss_pred HHhcCccccccCchhh-hhcCHHHhcC---CCEEEEeccccCCHH-----------HHHHHHHHHhcCEe-eecCCc---
Confidence 111111 1234555553 359999999988643 23457777775321 111111
Q ss_pred CCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHH----HHHHHHHhhcCc----c---cCC
Q 045279 268 SDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENA----RVQILSVLTRNL----R---VEG 329 (702)
Q Consensus 268 ~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~e----r~~Il~~~~~~~----~---~~~ 329 (702)
...+.++.||+|||.. ..+++.|.. ||. .+.+..|+..+ ...++..++... . ...
T Consensus 132 ----~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~ 204 (304)
T 1ojl_A 132 ----QTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGF 204 (304)
T ss_dssp ----CCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred ----ccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCC
Confidence 1123458999999984 246677777 874 45555555544 344555544332 1 111
Q ss_pred c-ccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 330 S-FDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 330 ~-~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
. ..+..+....-..+.++|.+++..++..
T Consensus 205 s~~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 205 TPQAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp CHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 1 1244455544233778888888877543
No 142
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=8.8e-13 Score=141.81 Aligned_cols=203 Identities=19% Similarity=0.198 Sum_probs=132.4
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEechhh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET------GVPFYKISATEV 194 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l------~~~~~~i~~~~l 194 (702)
...++++|.+..++.+.+.+...+. ...+.+++|+||||||||++++.+++.+ +.+++.+++...
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 3568999999999999877643221 2345689999999999999999999988 888999998753
Q ss_pred hcc----------------cccccHHH-HHHHHHHHHhh-CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhc
Q 045279 195 VSG----------------VSGASEEN-IRDLFSKAYRT-APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESH 256 (702)
Q Consensus 195 ~~~----------------~~g~~~~~-~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 256 (702)
... ..+..... ...++...... .|.+|+|||++.+...... ..+..++..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~- 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV- 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc-
Confidence 211 11222222 33444443333 3889999999998754211 2344455555422
Q ss_pred cccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhcCcc--cC-C
Q 045279 257 RLVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFD-REIVLGVPDENARVQILSVLTRNLR--VE-G 329 (702)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~-~~i~~~~p~~~er~~Il~~~~~~~~--~~-~ 329 (702)
...++.+|++|+.+ ..+++.+.+ ||. ..+.+++|+.++..+++...+.... .. .
T Consensus 160 -----------------~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~ 220 (386)
T 2qby_A 160 -----------------NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP 220 (386)
T ss_dssp -----------------CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC
T ss_pred -----------------CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC
Confidence 12348889999876 467888888 775 4899999999999999987665321 11 1
Q ss_pred cccHHHHHhhCC--CCCHHHHHHHHHHHHHHH
Q 045279 330 SFDLVKIARSTP--GFVGADLAALANKAGNLA 359 (702)
Q Consensus 330 ~~~~~~la~~t~--g~~~~dl~~l~~~a~~~a 359 (702)
...+..++..+. ..+++.+..++..+...+
T Consensus 221 ~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 221 DNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 122344554444 135566666777665443
No 143
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.45 E-value=1.6e-13 Score=142.65 Aligned_cols=188 Identities=17% Similarity=0.261 Sum_probs=119.4
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK---- 502 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~---- 502 (702)
+++|.....+.+.+.+... ...+.++||+||||||||++|++++... +.+|+.++|+.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4667776666665555433 1346789999999999999999999976 678999999876431
Q ss_pred ---------CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCC
Q 045279 503 ---------YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRK 564 (702)
Q Consensus 503 ---------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~ 564 (702)
|.|... .....|..+ .+++|||||++.+. ...+..|+..|+... ...
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a---~~g~L~LDEi~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEA---DGGTLFLDEIGDIS-----------PLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHH---TTSEEEEESCTTCC-----------HHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhh-hhcCHHHhc---CCCEEEEeccccCC-----------HHHHHHHHHHHhcCEeeecCCcccccC
Confidence 111111 122345555 45899999999998 677888888887532 124
Q ss_pred cEEEEEecCCC-------CccCccccCCCccc-eEEEcCCCC--HHHHHHHHHHHhcc----CCCC-CCCC---HHHHhh
Q 045279 565 GVFVIGATNRP-------DVMDRAVLRPGRFG-KLLYVPLPT--PDERGLILEALARK----KPID-DSVD---LHTIAQ 626 (702)
Q Consensus 565 ~~~vI~atn~~-------~~ld~a~~r~gRf~-~~i~~~~p~--~~~r~~il~~~~~~----~~~~-~~~~---~~~la~ 626 (702)
++.||+|||.. ..+++.+.. ||. ..|.+|++. .++...++..++.. .+.. .... ++.+.
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~- 213 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLI- 213 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHH-
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHH-
Confidence 57899999975 235666666 775 335666665 34555666665543 2211 1122 23333
Q ss_pred hhcCCCCCH--HHHHHHHHHHHHHH
Q 045279 627 SKFCENLSG--ADLAAMMNEAAMAA 649 (702)
Q Consensus 627 ~~~~~~~sg--~dl~~~~~~a~~~a 649 (702)
. ..|.| ++|++++..|+..+
T Consensus 214 -~--~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 214 -H--YDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp -H--CCCSSHHHHHHHHHHHHHHHC
T ss_pred -c--CCCCCCHHHHHHHHHHHHHhC
Confidence 1 13444 78888888887543
No 144
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=8.8e-13 Score=140.47 Aligned_cols=186 Identities=18% Similarity=0.166 Sum_probs=121.6
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV--------------- 184 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------------- 184 (702)
+.+|++++|++.+++.+...+.. .-+.+ +++|+|||||||||+++++++.+..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~-----------~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~ 77 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQ-----------PRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVT 77 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTC-----------TTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhh-----------CCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecc
Confidence 44899999999999888764410 11223 3999999999999999999996521
Q ss_pred --------------CeEEEechhhhcccccccHHHHHHHHHHHH--------------hhCCceEEechhhHhhhcchhh
Q 045279 185 --------------PFYKISATEVVSGVSGASEENIRDLFSKAY--------------RTAPSIVFIDEIDAIASKRENL 236 (702)
Q Consensus 185 --------------~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~--------------~~~p~il~iDEid~l~~~~~~~ 236 (702)
.++.++++... ......++..+..+. ...|.|++|||++.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~---- 149 (354)
T 1sxj_E 78 ASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD---- 149 (354)
T ss_dssp --------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH----
T ss_pred cccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH----
Confidence 12222222110 001112344444332 235679999999885422
Q ss_pred hHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHH
Q 045279 237 QREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQ 316 (702)
Q Consensus 237 ~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~ 316 (702)
..+.|+..+++. +.++.+|.+|+.+..+.+.+++ |+ ..+.|++|+.+++.+
T Consensus 150 -------~~~~L~~~le~~-------------------~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~ 200 (354)
T 1sxj_E 150 -------AQAALRRTMEKY-------------------SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEIST 200 (354)
T ss_dssp -------HHHHHHHHHHHS-------------------TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHH
T ss_pred -------HHHHHHHHHHhh-------------------cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHH
Confidence 233466666653 2237888889999999999999 99 789999999999999
Q ss_pred HHHHhhcCcccCC--cccHHHHHhhCCCCCHHHHHHHHHHH
Q 045279 317 ILSVLTRNLRVEG--SFDLVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 317 Il~~~~~~~~~~~--~~~~~~la~~t~g~~~~dl~~l~~~a 355 (702)
++...+....... ...+..+++.+.| +.+++.++++.+
T Consensus 201 ~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~ 240 (354)
T 1sxj_E 201 ILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESM 240 (354)
T ss_dssp HHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHH
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9998876554432 2345667766655 566665655544
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.44 E-value=1.4e-12 Score=140.65 Aligned_cols=201 Identities=17% Similarity=0.091 Sum_probs=132.4
Q ss_pred CcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCc--eEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechhhh
Q 045279 122 RFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMA--GILLYGPPGCGKTKLAHAIANET----GVPFYKISATEVV 195 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~--~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~~~l~ 195 (702)
..++++|.+..++.+...+...+.. ..+. +++|+||||||||++++++++.+ +..++.++|....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~ 85 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR 85 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence 4589999999999999877543221 2234 89999999999999999999998 5678889876543
Q ss_pred cc----------------cccccHHHHHHHHHH-HH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhcc
Q 045279 196 SG----------------VSGASEENIRDLFSK-AY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHR 257 (702)
Q Consensus 196 ~~----------------~~g~~~~~~~~~f~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 257 (702)
.. ..+.....+...+.. .. ...|.+|+|||+|.+. ...+..|+..++....
T Consensus 86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADK 154 (389)
T ss_dssp SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCC
Confidence 21 011122222222222 22 2457899999999882 1234445555543210
Q ss_pred ccCCCCCCCCCCCCCCCCCeEEEEEecCCC---CCCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhcCcc---cCCc
Q 045279 258 LVQPGDQKSKSDASDSKPGYVLVIGATNRP---DAVDPALRRPGRFDR-EIVLGVPDENARVQILSVLTRNLR---VEGS 330 (702)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~~ld~al~r~~Rf~~-~i~~~~p~~~er~~Il~~~~~~~~---~~~~ 330 (702)
. ...++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..+++...+.... .-..
T Consensus 155 ~---------------~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~ 217 (389)
T 1fnn_A 155 L---------------GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSE 217 (389)
T ss_dssp H---------------SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCH
T ss_pred C---------------CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCH
Confidence 0 00248899999887 578888888 8864 799999999999999988765411 1122
Q ss_pred ccHHHHHhhCC--------CCCHHHHHHHHHHHHHHH
Q 045279 331 FDLVKIARSTP--------GFVGADLAALANKAGNLA 359 (702)
Q Consensus 331 ~~~~~la~~t~--------g~~~~dl~~l~~~a~~~a 359 (702)
..+..++..+. +..++.+..+++.|...+
T Consensus 218 ~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 218 DILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp HHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 34556676663 236777788887776554
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.43 E-value=4.3e-14 Score=130.31 Aligned_cols=87 Identities=14% Similarity=0.214 Sum_probs=66.6
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccc
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~ 201 (702)
+|+|.+..++++.+.+... .....+|||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 6789999999988877432 2345679999999999999999999986 67899 999987654
Q ss_pred cHHHHHHHHHHHHhhCCceEEechhhHhhhc
Q 045279 202 SEENIRDLFSKAYRTAPSIVFIDEIDAIASK 232 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~~p~il~iDEid~l~~~ 232 (702)
......|..+. +++|||||||.+...
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l~~~ 91 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHLTRE 91 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGSCHH
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHCCHH
Confidence 22355666663 359999999988743
No 147
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=2.4e-12 Score=136.27 Aligned_cols=154 Identities=19% Similarity=0.278 Sum_probs=110.8
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEechhhh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV-----PFYKISATEVV 195 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~i~~~~l~ 195 (702)
.+|++++|++.+++.|...+.. | + ..+++|+||||||||++++++|+.+.. .+..+++++.
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~-----------g-~-~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~- 87 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDE-----------G-K-LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD- 87 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHT-----------T-C-CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-
T ss_pred CcHHHhcCcHHHHHHHHHHHhc-----------C-C-CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc-
Confidence 3899999999999999877632 2 1 124999999999999999999998743 3556665542
Q ss_pred cccccccHHHHHHHHHHHHh------hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC
Q 045279 196 SGVSGASEENIRDLFSKAYR------TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSD 269 (702)
Q Consensus 196 ~~~~g~~~~~~~~~f~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~ 269 (702)
.+ ...++..+..... ..+.|++|||+|.+.... .+.|+..++..
T Consensus 88 ---~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------~~~L~~~le~~-------------- 137 (340)
T 1sxj_C 88 ---RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA-----------QNALRRVIERY-------------- 137 (340)
T ss_dssp ---CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHT--------------
T ss_pred ---cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhcC--------------
Confidence 11 2233333333221 236799999999886422 33466667653
Q ss_pred CCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcc
Q 045279 270 ASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLR 326 (702)
Q Consensus 270 ~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~ 326 (702)
+..+.+|.+||.+..+.+++++ |+ ..+.|..++.++..+++...+....
T Consensus 138 -----~~~~~~il~~n~~~~i~~~i~s--R~-~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 138 -----TKNTRFCVLANYAHKLTPALLS--QC-TRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp -----TTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred -----CCCeEEEEEecCccccchhHHh--hc-eeEeccCCCHHHHHHHHHHHHHHcC
Confidence 2347788889999999999999 98 5789999999999999988775443
No 148
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.40 E-value=5.4e-13 Score=146.94 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=99.7
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CCeEEEech-----hhhc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG--VPFYKISAT-----EVVS 196 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~~i~~~-----~l~~ 196 (702)
..|+|.+++++.+...+. .+.++||+||||||||++|++||+.++ .+|..+++. ++..
T Consensus 22 ~~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G 86 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFG 86 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcC
Confidence 458899999988775552 236899999999999999999999884 345555443 3333
Q ss_pred ccccccHHHHHHHHHHHHhh---CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCC
Q 045279 197 GVSGASEENIRDLFSKAYRT---APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDS 273 (702)
Q Consensus 197 ~~~g~~~~~~~~~f~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 273 (702)
.+.+..... .+.|..+..+ .++|||||||+.+.+ .....|+..|++....+ .|. ...
T Consensus 87 ~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i-~G~-------~~~ 146 (500)
T 3nbx_X 87 PLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRN-GAH-------VEK 146 (500)
T ss_dssp CBC-----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEEC-SSS-------EEE
T ss_pred cccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccC-CCC-------cCC
Confidence 222221111 2223222222 356999999976653 34456888887543322 110 111
Q ss_pred CCCeEEEEEecCCCC---CCCccccCCCCcceEEEeCCCCH-HHHHHHHHHhh
Q 045279 274 KPGYVLVIGATNRPD---AVDPALRRPGRFDREIVLGVPDE-NARVQILSVLT 322 (702)
Q Consensus 274 ~~~~v~vI~atn~~~---~ld~al~r~~Rf~~~i~~~~p~~-~er~~Il~~~~ 322 (702)
.+.. ++|+|||++. ...+++++ ||...+.+++|+. +++..|+....
T Consensus 147 ~~~~-~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 147 IPMR-LLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCCC-EEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cchh-hhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 2222 4577777632 24468998 9988899999987 77889987654
No 149
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.40 E-value=3.7e-13 Score=123.96 Aligned_cols=112 Identities=16% Similarity=0.231 Sum_probs=80.6
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE 506 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~ 506 (702)
+++|.....+.+.+.+... .....+++|+||||||||++|++++... +.+|+ ++++.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 3556666655555544332 1345679999999999999999999976 77899 999887554
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 507 SELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 507 ~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
......|..+ .+++|||||+|.+. ...+..|+..|... ..++.+|+|||.+
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~-----------~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLT-----------REQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSC-----------HHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCC-----------HHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 2234566666 45899999999998 67777888877433 3456788889874
No 150
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.40 E-value=2.4e-14 Score=131.63 Aligned_cols=112 Identities=17% Similarity=0.243 Sum_probs=80.8
Q ss_pred cccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHH
Q 045279 125 DLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEE 204 (702)
Q Consensus 125 ~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~ 204 (702)
+++|.+..++++.+.+.... ....+|||+||||||||++|+++++... +|+.++|+.+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 57899999999888775432 3356799999999999999999999887 99999999876543
Q ss_pred HHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEec
Q 045279 205 NIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGAT 284 (702)
Q Consensus 205 ~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~at 284 (702)
...+|+.+. +++|||||+|.+.... ...|+..++... +.++.+|+||
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~~-----------q~~Ll~~l~~~~------------------~~~~~iI~~t 113 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRNI-----------QTGITFIIGKAE------------------RCRVRVIASC 113 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHHH-----------HHHHHHHHHHHT------------------TTTCEEEEEE
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHHH-----------HHHHHHHHHhCC------------------CCCEEEEEec
Confidence 356666653 4599999999886432 223555555431 2337899999
Q ss_pred CCC
Q 045279 285 NRP 287 (702)
Q Consensus 285 n~~ 287 (702)
|..
T Consensus 114 n~~ 116 (143)
T 3co5_A 114 SYA 116 (143)
T ss_dssp EEC
T ss_pred CCC
Confidence 864
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=2.2e-12 Score=136.64 Aligned_cols=181 Identities=19% Similarity=0.229 Sum_probs=126.2
Q ss_pred CCccccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhC-----CeEEEEeccc
Q 045279 424 PNVKWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAG-----ANFIHIKGPE 498 (702)
Q Consensus 424 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-----~~~~~i~~~~ 498 (702)
.+..|+++.|.+.+++.+...+.. | .. .+++|+||||||||++|+++|+.+. ..++.++.++
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~-----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE-----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT-----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc-----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 345688888988887777654431 2 22 2499999999999999999999863 2467777665
Q ss_pred ccccCcCchHHHHHHHHHHHHh------CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 499 LLNKYVGESELAVRTLFSRART------CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 499 l~~~~~g~~~~~~~~~f~~a~~------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
.. | ...++..+..... ..+.|++|||+|.+. ...++.|+..++... ..+.+|++|
T Consensus 87 ~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~~~~L~~~le~~~--~~~~~il~~ 147 (340)
T 1sxj_C 87 DR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAAQNALRRVIERYT--KNTRFCVLA 147 (340)
T ss_dssp CC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHHHHHHHHHHHHTT--TTEEEEEEE
T ss_pred cc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhcCC--CCeEEEEEe
Confidence 31 1 2334444433221 247899999999997 566788888887653 456677789
Q ss_pred CCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHH
Q 045279 573 NRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEA 645 (702)
Q Consensus 573 n~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a 645 (702)
|.+..+.+++.+ |+. .+.|++++.++...++...++...+.-+ ..+..++ .++++|++.+++..
T Consensus 148 n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~------~~s~G~~r~~~~~l 212 (340)
T 1sxj_C 148 NYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALI------ELSNGDMRRVLNVL 212 (340)
T ss_dssp SCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHH------HHHTTCHHHHHHHT
T ss_pred cCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH------HHcCCCHHHHHHHH
Confidence 999999999988 986 7899999999999999888865444322 1233344 34566777766643
No 152
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.38 E-value=4.5e-12 Score=156.81 Aligned_cols=115 Identities=26% Similarity=0.350 Sum_probs=82.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----------------CcCchHHHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK----------------YVGESELAVRTLFSRAR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 519 (702)
|+.++.+++|+||||||||++|.+++.++ +..+..++..+.+.. .+...+..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 47888999999999999999999998765 455666665543211 12345677777788888
Q ss_pred hCCCeEEEEeCcchhhccc---CCC--Cch-HHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 520 TCSPCILFFDEVDALTTKR---GKE--GGW-VVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r---~~~--~~~-~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
...|++|||||++.+.+.+ +.. ... ...++++++|.+|.+.....+++||+ ||.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~-tNq 1562 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIF-INQ 1562 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEE-EEC
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEE-Ecc
Confidence 8899999999999888642 211 111 24678899999998877667777764 443
No 153
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.37 E-value=2.9e-12 Score=135.19 Aligned_cols=131 Identities=17% Similarity=0.182 Sum_probs=100.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCe------------------------EEEEecccccccCcCchHHHHHHHHH
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGAN------------------------FIHIKGPELLNKYVGESELAVRTLFS 516 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~------------------------~~~i~~~~l~~~~~g~~~~~~~~~f~ 516 (702)
+.+..+||+||||+|||++|+++|+.+.+. ++.+.+.+- + ...+...++.+++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-K--NTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-C--SSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-C--CCCCHHHHHHHHH
Confidence 445679999999999999999999987432 333333210 0 1123455777877
Q ss_pred HHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEE
Q 045279 517 RART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLL 592 (702)
Q Consensus 517 ~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i 592 (702)
.+.. ..+.|++|||+|.+. ....+.|+..|+.. ..++++|++||.++.+.+++.+ |+. .+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~-----------~~a~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~ 162 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT-----------DAAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RCR-LH 162 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC-----------HHHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TSE-EE
T ss_pred HHhhccccCCcEEEEECchhhcC-----------HHHHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cce-ee
Confidence 7653 346899999999998 67789999999853 4577888889999999999998 884 79
Q ss_pred EcCCCCHHHHHHHHHHHh
Q 045279 593 YVPLPTPDERGLILEALA 610 (702)
Q Consensus 593 ~~~~p~~~~r~~il~~~~ 610 (702)
.|++|+.++...++....
T Consensus 163 ~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 163 YLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp ECCCCCHHHHHHHHHHHC
T ss_pred eCCCCCHHHHHHHHHHhc
Confidence 999999999998888765
No 154
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.36 E-value=1.1e-13 Score=156.64 Aligned_cols=176 Identities=20% Similarity=0.242 Sum_probs=106.7
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE----echhhhcccc
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI----SATEVVSGVS 199 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i----~~~~l~~~~~ 199 (702)
..|+|++.+|+.+.-.+.. ..+.......++...++||+||||||||++|+++|+.++..++.. ++..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 5689999988777432211 000000001234445899999999999999999999987655432 2233322211
Q ss_pred -----cccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCC
Q 045279 200 -----GASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSK 274 (702)
Q Consensus 200 -----g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~ 274 (702)
|..... .+.+..| .++|+||||||.+.... ...|+..|+.....+...+ .....
T Consensus 373 ~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~~~-----------q~~Ll~~le~~~i~i~~~g------~~~~~ 431 (595)
T 3f9v_A 373 REKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRDED-----------RVAIHEAMEQQTVSIAKAG------IVAKL 431 (595)
T ss_dssp SGGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCSHH-----------HHHHHHHHHSSSEEEESSS------SEEEE
T ss_pred ecccccccccc-CCeeEec---CCCcEEeehhhhCCHhH-----------hhhhHHHHhCCEEEEecCC------cEEEe
Confidence 111000 1233334 34599999999886432 3457777775332211111 11112
Q ss_pred CCeEEEEEecCCCC-------------CCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhcCc
Q 045279 275 PGYVLVIGATNRPD-------------AVDPALRRPGRFDR-EIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 275 ~~~v~vI~atn~~~-------------~ld~al~r~~Rf~~-~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
+.++.||||||+.. .+++++++ ||+. .+..+.|+.+ ...|++..+...
T Consensus 432 ~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 432 NARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp CCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred cCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 34589999999986 89999999 9974 4556667767 788887776544
No 155
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.36 E-value=9.4e-13 Score=150.05 Aligned_cols=148 Identities=17% Similarity=0.194 Sum_probs=95.0
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-------------------CCCCcEEEEEecCCC--CccCc
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-------------------DKRKGVFVIGATNRP--DVMDR 580 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-------------------~~~~~~~vI~atn~~--~~ld~ 580 (702)
.+++|||||++.+. ..+++.|+..|+.. ....++.||+|||+. +.+++
T Consensus 201 ~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~ 269 (604)
T 3k1j_A 201 HKGVLFIDEIATLS-----------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP 269 (604)
T ss_dssp TTSEEEETTGGGSC-----------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred CCCEEEEechhhCC-----------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence 66899999999987 77888888887732 112367899999986 68999
Q ss_pred cccCCCccc---eEEEcCCC---CHHHHHHHHHHHhccCC-----C-CCCCCHHHHhhhhc-CCC------CCHHHHHHH
Q 045279 581 AVLRPGRFG---KLLYVPLP---TPDERGLILEALARKKP-----I-DDSVDLHTIAQSKF-CEN------LSGADLAAM 641 (702)
Q Consensus 581 a~~r~gRf~---~~i~~~~p---~~~~r~~il~~~~~~~~-----~-~~~~~~~~la~~~~-~~~------~sg~dl~~~ 641 (702)
+|++ ||+ ..+.|+.. ..+....+++.+.+... . -.+..+..+..... ..| .+-+++.++
T Consensus 270 ~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 270 ALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp HHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred HHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 9999 996 46666542 34455666655433211 1 11223444443211 123 257999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCCCCCHHHHHHHHH
Q 045279 642 MNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKT 694 (702)
Q Consensus 642 ~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~~~~~~~~~~~~~ 694 (702)
++.|...|..+.. ..|+.+|+.+|++.. ..+.++..+.|..
T Consensus 348 lr~A~~~A~~~~~-----------~~I~~edv~~A~~~~-~~i~~~~~e~~l~ 388 (604)
T 3k1j_A 348 VRAAGDIAVKKGK-----------KYVEREDVIEAVKMA-KPLEKQLADWYIE 388 (604)
T ss_dssp HHHHHHHHHHTTC-----------SSBCHHHHHHHHHHT-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-----------ccccHHHHHHHHHhh-hhhHHHHHHHHhc
Confidence 9998766644322 279999999999754 3344555555543
No 156
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=7.8e-13 Score=121.48 Aligned_cols=132 Identities=15% Similarity=0.207 Sum_probs=90.8
Q ss_pred ccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHH
Q 045279 430 DVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESEL 509 (702)
Q Consensus 430 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~ 509 (702)
+++|.+...+.+.+.+.... ..+.+++|+||||||||++|++++.... +|+.++++++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 35677777666666554331 3456799999999999999999999888 99999998875543
Q ss_pred HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC-Cc----cCccccC
Q 045279 510 AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP-DV----MDRAVLR 584 (702)
Q Consensus 510 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~-~~----ld~a~~r 584 (702)
...+|..+ .+++|||||+|.+. ...+..|+..|+... ..++.+|+|||.+ +. +++.+..
T Consensus 67 -~~~~~~~a---~~~~l~lDei~~l~-----------~~~q~~Ll~~l~~~~-~~~~~iI~~tn~~~~~~~~~~~~~L~~ 130 (143)
T 3co5_A 67 -PMELLQKA---EGGVLYVGDIAQYS-----------RNIQTGITFIIGKAE-RCRVRVIASCSYAAGSDGISCEEKLAG 130 (143)
T ss_dssp -HHHHHHHT---TTSEEEEEECTTCC-----------HHHHHHHHHHHHHHT-TTTCEEEEEEEECTTTC--CHHHHHHH
T ss_pred -hhhHHHhC---CCCeEEEeChHHCC-----------HHHHHHHHHHHHhCC-CCCEEEEEecCCCHHHHHhCccHHHHH
Confidence 34566655 45899999999998 566777777776532 3457788888864 33 3344444
Q ss_pred CCccc-eEEEcCCC
Q 045279 585 PGRFG-KLLYVPLP 597 (702)
Q Consensus 585 ~gRf~-~~i~~~~p 597 (702)
|+. ..|.+|+.
T Consensus 131 --rl~~~~i~lPpL 142 (143)
T 3co5_A 131 --LFSESVVRIPPL 142 (143)
T ss_dssp --HSSSEEEEECCC
T ss_pred --HhcCcEEeCCCC
Confidence 543 35666653
No 157
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=8.3e-12 Score=129.37 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=100.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh------CCeEEEEecccccccCcCchHHHHHHHHHHHHhC----CCeEEEEeCcc
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA------GANFIHIKGPELLNKYVGESELAVRTLFSRARTC----SPCILFFDEVD 532 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~------~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~----~~~vl~iDEid 532 (702)
..++|||||||+|||++|+++|+.+ ..+++.+++++- ..+...+|.+++.+... ...|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 4589999999999999999999864 346777775420 12345578888887643 24799999999
Q ss_pred hhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHh
Q 045279 533 ALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALA 610 (702)
Q Consensus 533 ~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~ 610 (702)
.+. ....|.||..|+.. ..++++|++||.+..+.|++.+ | ++.|++|+.++...++...+
T Consensus 93 ~lt-----------~~a~naLLk~LEep--~~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 93 RMT-----------QQAANAFLKALEEP--PEYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GBC-----------HHHHHHTHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HhC-----------HHHHHHHHHHHhCC--CCCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 998 77889999999854 4567777888889999999998 8 89999999999988888776
No 158
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.31 E-value=5.5e-11 Score=125.40 Aligned_cols=175 Identities=20% Similarity=0.269 Sum_probs=118.2
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------------
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--------------------- 185 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--------------------- 185 (702)
-.++++++.+...+.. -+.++.+||+||||+|||++|+++|+.+...
T Consensus 5 pw~~~~~~~l~~~i~~------------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~ 72 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQA------------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGT 72 (334)
T ss_dssp GGGHHHHHHHHHHHHT------------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHc------------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3456777777766521 2345679999999999999999999988543
Q ss_pred ---eEEEechhhhcccccccHHHHHHHHHHHHh----hCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccc
Q 045279 186 ---FYKISATEVVSGVSGASEENIRDLFSKAYR----TAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRL 258 (702)
Q Consensus 186 ---~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 258 (702)
++.+++.. +........++.+++.+.. +.+.|++|||+|.|... ..+.|+..+++
T Consensus 73 ~~d~~~~~~~~---~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-----------a~naLLk~lEe---- 134 (334)
T 1a5t_A 73 HPDYYTLAPEK---GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-----------AANALLKTLEE---- 134 (334)
T ss_dssp CTTEEEECCCT---TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-----------HHHHHHHHHTS----
T ss_pred CCCEEEEeccc---cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-----------HHHHHHHHhcC----
Confidence 22232210 0011223456677666542 34579999999988642 23467887775
Q ss_pred cCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHh
Q 045279 259 VQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIAR 338 (702)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~ 338 (702)
.+.++++|.+||.++.+.|.+++ |+ ..+.|+.|+.++..+++.... .+ ....+..+++
T Consensus 135 ---------------p~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~ 192 (334)
T 1a5t_A 135 ---------------PPAETWFFLATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV---TM-SQDALLAALR 192 (334)
T ss_dssp ---------------CCTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHH
T ss_pred ---------------CCCCeEEEEEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHH
Confidence 24458888899999999999999 98 679999999999999998765 11 1223455666
Q ss_pred hCCCCCHHHHHHHHHH
Q 045279 339 STPGFVGADLAALANK 354 (702)
Q Consensus 339 ~t~g~~~~dl~~l~~~ 354 (702)
.+.| +.+.+..+++.
T Consensus 193 ~s~G-~~r~a~~~l~~ 207 (334)
T 1a5t_A 193 LSAG-SPGAALALFQG 207 (334)
T ss_dssp HTTT-CHHHHHHTTSS
T ss_pred HcCC-CHHHHHHHhcc
Confidence 6655 55555544443
No 159
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.26 E-value=2.5e-10 Score=123.84 Aligned_cols=206 Identities=17% Similarity=0.108 Sum_probs=124.8
Q ss_pred cccCCcccchhhhHHHH-HHHhhChHHHHHcCC-CCCcceEE--EcCCCCChhHHHHHHHHHh---------CCeEEEEe
Q 045279 429 EDVGGLDYLRHEFDRYI-VRRIKFPEEYEEFGV-DLETGFLL--YGPPGCGKTLIAKAVANEA---------GANFIHIK 495 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~-~~~~~~ll--~Gp~GtGKT~la~~la~~~---------~~~~~~i~ 495 (702)
+.+.|.+...+.+...+ ..... +. ..+..+++ +||||+|||++++.+++.+ +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 56788888777777665 43321 10 23457889 9999999999999999876 45677887
Q ss_pred ccccccc----------------CcCchHHH-HHHHHHHHH-hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhh
Q 045279 496 GPELLNK----------------YVGESELA-VRTLFSRAR-TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIEL 557 (702)
Q Consensus 496 ~~~l~~~----------------~~g~~~~~-~~~~f~~a~-~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 557 (702)
+....+. ..+.+... ...+..... ...|.||+|||++.+...+... ...+..++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHHH
Confidence 6432110 01111112 222322222 2457899999999987431111 45556565555
Q ss_pred hCCC-CC--CcEEEEEecCCCC---ccC---ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCCC---CCCCCHHHHh
Q 045279 558 DGAD-KR--KGVFVIGATNRPD---VMD---RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPI---DDSVDLHTIA 625 (702)
Q Consensus 558 ~~~~-~~--~~~~vI~atn~~~---~ld---~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~la 625 (702)
.... .. .++.||++|+.++ .++ +.+.+ |+...+.+++++.++..+++...+..... ..+..+..++
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 4432 12 6788888887665 344 55656 66666999999999999999877653211 1122234444
Q ss_pred hhhcCCC-----CCHHHHHHHHHHHHHHHHH
Q 045279 626 QSKFCEN-----LSGADLAAMMNEAAMAALE 651 (702)
Q Consensus 626 ~~~~~~~-----~sg~dl~~~~~~a~~~a~~ 651 (702)
..+.. -..+.+.++++.|+..+..
T Consensus 247 --~~~~~~~~~~G~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 247 --DVYGEDKGGDGSARRAIVALKMACEMAEA 275 (412)
T ss_dssp --HHHCGGGTSCCCHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhccCCCcHHHHHHHHHHHHHHHHH
Confidence 33431 2446777788777655543
No 160
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.24 E-value=8.7e-12 Score=102.70 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 598 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+.++|.+||+.++++.++..+++++.+| ..|+||||+||.++|++|++.|+++.. ..|+++||..|+
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la--~~t~G~SGADi~~l~~eA~~~a~~~~~-----------~~i~~~df~~Al 68 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYV--ARPDKISGADINSICQESGMLAVRENR-----------YIVLAKDFEKAY 68 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHH--TSSCCCCHHHHHHHHHHHHHGGGTSCC-----------SSBCHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcc-----------CCcCHHHHHHHH
Confidence 6789999999999999988899999999 679999999999999999999887642 379999999999
Q ss_pred hhcCCCCCHHHHHHHH
Q 045279 678 SKISPSVSELQIQRYK 693 (702)
Q Consensus 678 ~~~~~~~~~~~~~~~~ 693 (702)
.+++|+++ ++++.|+
T Consensus 69 ~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 69 KTVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHHCC-----------
T ss_pred HHHccCch-HHHHhcC
Confidence 99999998 7777774
No 161
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=3.4e-11 Score=124.72 Aligned_cols=142 Identities=14% Similarity=0.191 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEechhhhcccccc
Q 045279 128 GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET------GVPFYKISATEVVSGVSGA 201 (702)
Q Consensus 128 G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l------~~~~~~i~~~~l~~~~~g~ 201 (702)
|++++++.+...+.. +. ..++||+||||+|||++|+++|+.+ ...++.++++.- ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CB
T ss_pred ChHHHHHHHHHHHHC-----------CC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CC
Confidence 677788888877622 22 5689999999999999999999863 346677765420 12
Q ss_pred cHHHHHHHHHHHHhh----CCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCe
Q 045279 202 SEENIRDLFSKAYRT----APSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGY 277 (702)
Q Consensus 202 ~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 277 (702)
....++.+++.+... ...|+||||+|.|... ..+.|+..+++ .+++
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-----------a~naLLk~LEe-------------------p~~~ 112 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-----------AANAFLKALEE-------------------PPEY 112 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-----------HHHHTHHHHHS-------------------CCTT
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-----------HHHHHHHHHhC-------------------CCCC
Confidence 334567777776432 2469999999998643 24568888885 2456
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 045279 278 VLVIGATNRPDAVDPALRRPGRFDREIVLGVPDENARVQILSVLT 322 (702)
Q Consensus 278 v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~ 322 (702)
+++|.+|+.+..+.|.+++ | .+.|++|+.++..+++...+
T Consensus 113 t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 113 AVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred eEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 8888888989999999999 8 68999999999999998776
No 162
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.23 E-value=1.7e-11 Score=101.88 Aligned_cols=85 Identities=20% Similarity=0.373 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHH
Q 045279 598 TPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 598 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al 677 (702)
+.++|.+||+.++++.++..+++++.|| ..|+||||+||.++|++|++.|+++... .|+++||+.|+
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA--~~t~G~SGADl~~l~~eAa~~a~r~~~~-----------~i~~~df~~Al 68 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELIS--RLCPNSTGAELRSVCTEAGMFAIRARRK-----------VATEKDFLKAV 68 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHH--HTCSSCCHHHHHHHHHHHHHHHHHHSCS-----------SBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHH--HHcCCCcHHHHHHHHHHHHHHHHHhccc-----------cCCHHHHHHHH
Confidence 5678999999999999999999999999 6799999999999999999999998532 79999999999
Q ss_pred hhcCCCCCHH-HHHHHHHH
Q 045279 678 SKISPSVSEL-QIQRYKTL 695 (702)
Q Consensus 678 ~~~~~~~~~~-~~~~~~~~ 695 (702)
+++.++.... ....|..|
T Consensus 69 ~~v~~~~~~~~~~~~y~~w 87 (88)
T 3vlf_B 69 DKVISGYKKFSSTSRYMQY 87 (88)
T ss_dssp HHHTC--------------
T ss_pred HHHhcCcccccchhHHhcc
Confidence 9999987653 45667666
No 163
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.22 E-value=9.8e-10 Score=141.33 Aligned_cols=143 Identities=16% Similarity=0.213 Sum_probs=93.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQ 237 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~ 237 (702)
..+..+.||+|||||.+++.+|+.+|.+++.++|++- -....+..+|..+... +.+.++||++.+....-...
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~------~d~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSvv 676 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEG------FDLQAMSRIFVGLCQC-GAWGCFDEFNRLEERILSAV 676 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSC------CCHHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCC------CCHHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHHH
Confidence 3467899999999999999999999999999999873 2334566677766544 45999999987753322111
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCC----CCCCCccccCCCCcceEEEeCCCCHHH
Q 045279 238 REMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNR----PDAVDPALRRPGRFDREIVLGVPDENA 313 (702)
Q Consensus 238 ~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~----~~~ld~al~r~~Rf~~~i~~~~p~~~e 313 (702)
.+. +..+...+......+.-.. +....-+..+.|++|+|+ ..+++++++. || +.|.+..|+.+.
T Consensus 677 ~~q----i~~I~~a~~~~~~~~~~~~-----G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~ 744 (3245)
T 3vkg_A 677 SQQ----IQTIQVALKENSKEVELLG-----GKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREM 744 (3245)
T ss_dssp HHH----HHHHHHHHHHTCSEECCC--------CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHH
T ss_pred HHH----HHHHHHHHHcCCCeEEecC-----CCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHH
Confidence 111 1111122221111111110 001111234788999996 4589999999 99 779999999988
Q ss_pred HHHHHH
Q 045279 314 RVQILS 319 (702)
Q Consensus 314 r~~Il~ 319 (702)
..+|+-
T Consensus 745 i~ei~L 750 (3245)
T 3vkg_A 745 IAQVML 750 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777753
No 164
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.20 E-value=4.1e-12 Score=157.19 Aligned_cols=116 Identities=21% Similarity=0.278 Sum_probs=79.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cC--------chHHHHHHHHHHHHh---
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VG--------ESELAVRTLFSRART--- 520 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g--------~~~~~~~~~f~~a~~--- 520 (702)
|+.++..++|+|+||+|||++|..+|..+ +.+++.++..+....+ .| ..+..+..++..++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 47788889999999999999999998866 4568888877655432 12 112224455555443
Q ss_pred -CCCeEEEEeCcchhhc-c----cCCCCc-hHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 521 -CSPCILFFDEVDALTT-K----RGKEGG-WVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 521 -~~~~vl~iDEid~l~~-~----r~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
..|++||||.+..+.. . +.++.. ....+.+++++..|.......++.||+++.-
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Qv 868 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQI 868 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEeccc
Confidence 6799999999999875 2 111111 2334557888888877666777778777654
No 165
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.19 E-value=2.1e-11 Score=100.50 Aligned_cols=77 Identities=27% Similarity=0.406 Sum_probs=70.2
Q ss_pred cCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHH
Q 045279 594 VPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHF 673 (702)
Q Consensus 594 ~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~ 673 (702)
-.+|+.++|.+||+.++++.++..+++++.|| ..|+||||+||.++|++|++.|+++.. ..|+++||
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA--~~T~G~SGADL~~l~~eAa~~alr~~~-----------~~I~~~df 74 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIA--ELMPGASGAEVKGVCTEAGMYALRERR-----------VHVTQEDF 74 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHH--HTCSSCCHHHHHHHHHHHHHHHHHTTC-----------SEECHHHH
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 36899999999999999999988899999999 679999999999999999999998752 37999999
Q ss_pred HHHHhhcCCC
Q 045279 674 EQALSKISPS 683 (702)
Q Consensus 674 ~~al~~~~~~ 683 (702)
+.|+.++.|.
T Consensus 75 ~~Al~~v~p~ 84 (86)
T 2krk_A 75 EMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHccC
Confidence 9999998774
No 166
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.18 E-value=4.2e-11 Score=97.26 Aligned_cols=75 Identities=29% Similarity=0.456 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHH
Q 045279 595 PLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFE 674 (702)
Q Consensus 595 ~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~ 674 (702)
|+|+.++|.+||+.++++.++..+++++.+| ..|+||||+||.++|++|++.|+++.. ..|+++||.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la--~~t~G~SGADi~~l~~eA~~~a~~~~~-----------~~i~~~d~~ 67 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIA--ELMPGASGAEVKGVCTEAGMYALRERR-----------VHVTQEDFE 67 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCC-----------CCCCHHHHH
Confidence 7899999999999999999988899999999 678999999999999999999998843 379999999
Q ss_pred HHHhhcCC
Q 045279 675 QALSKISP 682 (702)
Q Consensus 675 ~al~~~~~ 682 (702)
.|+.++..
T Consensus 68 ~Al~~v~~ 75 (78)
T 3kw6_A 68 MAVAKVMQ 75 (78)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99998754
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.11 E-value=6.5e-11 Score=134.85 Aligned_cols=50 Identities=28% Similarity=0.378 Sum_probs=42.3
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
...|++++|.+.+++.+...+. .+.+++|+|||||||||+|++|++.+..
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~---------------~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAAN---------------QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHH---------------TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred ccccceEECchhhHhhcccccc---------------CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3479999999999988886662 2358999999999999999999998853
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.11 E-value=7.8e-10 Score=119.98 Aligned_cols=209 Identities=16% Similarity=0.079 Sum_probs=125.1
Q ss_pred CcccccCHHHHHHHHHHHh-hhhccCCCcccccCCCCCceEEE--ECCCCCCHHHHHHHHHHHh---------CCCeEEE
Q 045279 122 RFQDLGGMESVLEELKMEV-IVPLYHPQLPQWLGVRPMAGILL--YGPPGCGKTKLAHAIANET---------GVPFYKI 189 (702)
Q Consensus 122 ~~~~i~G~~~~k~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLl--~GppGtGKT~la~~la~~l---------~~~~~~i 189 (702)
..+.++|.+..++.+.+.+ ......+ ...+.+++| +||||+|||++++.+++.+ +..++++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 4578999999999998776 4332210 023467999 9999999999999998876 4567788
Q ss_pred echhhhc------c----------cccccHHH-HHHHHHHHH-hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHH
Q 045279 190 SATEVVS------G----------VSGASEEN-IRDLFSKAY-RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTC 251 (702)
Q Consensus 190 ~~~~l~~------~----------~~g~~~~~-~~~~f~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 251 (702)
+|..... . ..+..... ...+..... ...|.+|+|||+|.+....... ...+..++..
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~ 167 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRV 167 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHH
Confidence 8643211 0 00111122 222222221 2457899999999986431100 1223334444
Q ss_pred HhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---CCC---ccccCCCCcceEEEeCCCCHHHHHHHHHHhhcCc
Q 045279 252 MDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---AVD---PALRRPGRFDREIVLGVPDENARVQILSVLTRNL 325 (702)
Q Consensus 252 ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---~ld---~al~r~~Rf~~~i~~~~p~~~er~~Il~~~~~~~ 325 (702)
+..... . ....++.+|++++.++ .++ +.+.+ ||...+.+++++.++..+++...+...
T Consensus 168 ~~~~~~-----------~---~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~ 231 (412)
T 1w5s_A 168 HEEIPS-----------R---DGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELG 231 (412)
T ss_dssp HHHSCC-----------T---TSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHhccc-----------C---CCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhc
Confidence 443210 0 0013488888887654 344 66667 666669999999999999997665422
Q ss_pred cc---CCcccHHHHHhhCC------CCCHHHHHHHHHHHHHHH
Q 045279 326 RV---EGSFDLVKIARSTP------GFVGADLAALANKAGNLA 359 (702)
Q Consensus 326 ~~---~~~~~~~~la~~t~------g~~~~dl~~l~~~a~~~a 359 (702)
.. .....+..++..+. | +++.+..++..+...+
T Consensus 232 ~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 232 LRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp BCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 11 11223555666666 5 5667777777665443
No 169
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.04 E-value=1e-10 Score=95.90 Aligned_cols=81 Identities=28% Similarity=0.388 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhh
Q 045279 600 DERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSK 679 (702)
Q Consensus 600 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~ 679 (702)
++|.+||+.++++.++..+++++.+| ..|+||||+||.++|++|++.|+++.. ..|+++||..|+.+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA--~~t~G~SGADi~~l~~eAa~~ai~~~~-----------~~i~~~df~~Al~~ 67 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLI--IRNDSLSGAVIAAIMQEAGLRAVRKNR-----------YVILQSDLEEAYAT 67 (82)
T ss_dssp -------------CEECTTCCSTTTT--TSSCCCCHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhcc-----------CCcCHHHHHHHHHH
Confidence 46889999999999888889999999 679999999999999999999998743 27999999999999
Q ss_pred c-CCCCCHHHHHHHH
Q 045279 680 I-SPSVSELQIQRYK 693 (702)
Q Consensus 680 ~-~~~~~~~~~~~~~ 693 (702)
+ .++.+..+++.|.
T Consensus 68 v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 68 QVKTDNTVDKFDFYK 82 (82)
T ss_dssp TCC------------
T ss_pred HHcCcCChHHHHhhC
Confidence 8 4777777777663
No 170
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.00 E-value=5.4e-10 Score=120.01 Aligned_cols=199 Identities=17% Similarity=0.197 Sum_probs=118.8
Q ss_pred cccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhhhcc--
Q 045279 123 FQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISATEVVSG-- 197 (702)
Q Consensus 123 ~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l~~~-- 197 (702)
+..++|.....+++.+.+... .....+|+|+|++|||||++|++|..... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~ 204 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIF 204 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh-----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHH
Confidence 456777777777777666331 23456799999999999999999987763 78999999986432
Q ss_pred -----------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 045279 198 -----------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKS 266 (702)
Q Consensus 198 -----------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~ 266 (702)
+.|.... ..++|+.|.+ ++||||||+.+.... ...|+..++.... ...|+..
T Consensus 205 ~~elfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~~-----------q~~Ll~~l~~~~~-~~~g~~~- 267 (387)
T 1ny5_A 205 EAELFGYEKGAFTGAVSS-KEGFFELADG---GTLFLDEIGELSLEA-----------QAKLLRVIESGKF-YRLGGRK- 267 (387)
T ss_dssp HHHHHCBCTTSSTTCCSC-BCCHHHHTTT---SEEEEESGGGCCHHH-----------HHHHHHHHHHSEE-CCBTCCS-
T ss_pred HHHhcCCCCCCCCCcccc-cCCceeeCCC---cEEEEcChhhCCHHH-----------HHHHHHHHhcCcE-EeCCCCc-
Confidence 2222211 2456777644 499999999887543 3457777775321 1112111
Q ss_pred CCCCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHHHH----HHHHHhhcCc----ccC-C-
Q 045279 267 KSDASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENARV----QILSVLTRNL----RVE-G- 329 (702)
Q Consensus 267 ~~~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~er~----~Il~~~~~~~----~~~-~- 329 (702)
..+-++++|+|||.. ..+.+.+.. |+ ..+.+..|+..+|. .++..++... ... .
T Consensus 268 ------~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ 338 (387)
T 1ny5_A 268 ------EIEVNVRILAATNRNIKELVKEGKFREDLYY--RL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEG 338 (387)
T ss_dssp ------BEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred ------eeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hh-cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCC
Confidence 112358999999973 133444444 55 34566777765553 3444443322 211 1
Q ss_pred --cccHHHHHhhCCCCCHHHHHHHHHHHHHH
Q 045279 330 --SFDLVKIARSTPGFVGADLAALANKAGNL 358 (702)
Q Consensus 330 --~~~~~~la~~t~g~~~~dl~~l~~~a~~~ 358 (702)
...+..+....=-.+.++|++++..|+..
T Consensus 339 ~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 339 FTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp ECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 11233344332223678999988887654
No 171
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.98 E-value=8.2e-10 Score=118.62 Aligned_cols=183 Identities=17% Similarity=0.251 Sum_probs=115.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc-------------CcCchHHHHHHHHHHHHhCCCeE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK-------------YVGESELAVRTLFSRARTCSPCI 525 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~-------------~~g~~~~~~~~~f~~a~~~~~~v 525 (702)
...+++++|++||||+++|++++... +.+|+.++|+.+... |.|.... ...+|+.| ..++
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a---~~gt 234 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA---DGGT 234 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT---TTSE
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC---CCcE
Confidence 34568999999999999999999876 479999999875321 1111110 12345555 4589
Q ss_pred EEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC---------CCCcEEEEEecCCC-------CccCccccCCCccc
Q 045279 526 LFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD---------KRKGVFVIGATNRP-------DVMDRAVLRPGRFG 589 (702)
Q Consensus 526 l~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~atn~~-------~~ld~a~~r~gRf~ 589 (702)
||||||+.+. ..++..|+..|+... ...++.||+|||.. ..+.+.+.. |+.
T Consensus 235 lfldei~~l~-----------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~ 301 (387)
T 1ny5_A 235 LFLDEIGELS-----------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLG 301 (387)
T ss_dssp EEEESGGGCC-----------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT
T ss_pred EEEcChhhCC-----------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhc
Confidence 9999999998 788888988877521 12357899999973 234444443 553
Q ss_pred -eEEEcCCCCH--HHHHHHHHHHhcc----CCCC-CCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHHHHHHHHhhcC
Q 045279 590 -KLLYVPLPTP--DERGLILEALARK----KPID-DSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMAALEDKLISSK 658 (702)
Q Consensus 590 -~~i~~~~p~~--~~r~~il~~~~~~----~~~~-~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~a~~~~~~~~~ 658 (702)
..|.+|+... ++...++.+++.+ .... ....-+.+. .+ ...|.| ++|+++++.|+..+-
T Consensus 302 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~--~l~~~~wpGNvreL~~~i~~~~~~~~-------- 371 (387)
T 1ny5_A 302 VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQE--LLLSYPWYGNVRELKNVIERAVLFSE-------- 371 (387)
T ss_dssp TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHH--HHHHSCCTTHHHHHHHHHHHHHHHCC--------
T ss_pred CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHH--HHHhCCCCcHHHHHHHHHHHHHHhCC--------
Confidence 3456665543 4555666666543 2221 112222222 22 246766 799999998885431
Q ss_pred CCCCCCCccccHHHHHHHH
Q 045279 659 SSSDVTPFTIKLTHFEQAL 677 (702)
Q Consensus 659 ~~~~~~~~~i~~~d~~~al 677 (702)
...|+.+|+...+
T Consensus 372 ------~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 372 ------GKFIDRGELSCLV 384 (387)
T ss_dssp ------SSEECHHHHHHHC
T ss_pred ------CCcCcHHHCcHhh
Confidence 1268888886543
No 172
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.93 E-value=1.9e-09 Score=102.78 Aligned_cols=98 Identities=16% Similarity=0.276 Sum_probs=61.8
Q ss_pred CCCcccccC----HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Q 045279 120 GPRFQDLGG----MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISA 191 (702)
Q Consensus 120 ~~~~~~i~G----~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~ 191 (702)
..+|+++++ +..+++.+.+.+. .+....+.+++|+|||||||||+++++++.+ +..++.++.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVH----------NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHH----------SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHH----------hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 348999886 4444555544442 2233457889999999999999999999887 567777887
Q ss_pred hhhhcccccccHHH-HHHHHHHHHhhCCceEEechhhHh
Q 045279 192 TEVVSGVSGASEEN-IRDLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 192 ~~l~~~~~g~~~~~-~~~~f~~a~~~~p~il~iDEid~l 229 (702)
.++...+....... ...++.. -..|.+|+|||++..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 76 KDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred HHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 77654322111000 0012222 235779999999743
No 173
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.88 E-value=2.7e-09 Score=101.67 Aligned_cols=107 Identities=17% Similarity=0.154 Sum_probs=63.8
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccccCcCchHH-HHHHHHHHHHhCCCeEEEEeCcc
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLNKYVGESEL-AVRTLFSRARTCSPCILFFDEVD 532 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~~~g~~~~-~~~~~f~~a~~~~~~vl~iDEid 532 (702)
+....+.+++|+||||||||++++++++.+ +..++.++..++...+...... ....++... ..|.+|+|||++
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~ 110 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLG 110 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCS
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCC
Confidence 334456789999999999999999999876 5566777776665432211000 001122222 267899999998
Q ss_pred hhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC
Q 045279 533 ALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD 576 (702)
Q Consensus 533 ~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~ 576 (702)
... ...+....+..++..... .+..+|++||.+.
T Consensus 111 ~~~------~~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 111 SER------LSDWQRELISYIITYRYN----NLKSTIITTNYSL 144 (180)
T ss_dssp SSC------CCHHHHHHHHHHHHHHHH----TTCEEEEECCCCS
T ss_pred CCc------CCHHHHHHHHHHHHHHHH----cCCCEEEEcCCCh
Confidence 542 112234455555544321 2345677888753
No 174
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.86 E-value=2.7e-09 Score=113.63 Aligned_cols=196 Identities=17% Similarity=0.232 Sum_probs=115.4
Q ss_pred ccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC--eEEEechhhhcc----
Q 045279 124 QDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVP--FYKISATEVVSG---- 197 (702)
Q Consensus 124 ~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~--~~~i~~~~l~~~---- 197 (702)
..++|......++.+.+... .....+++++|++||||+++|+++....+.. |+.++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHH
T ss_pred ccccccchHHHHHHhhhhhh-----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHH
Confidence 45777777777666555321 1234569999999999999999998877543 999999986443
Q ss_pred ---------cccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCC
Q 045279 198 ---------VSGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKS 268 (702)
Q Consensus 198 ---------~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~ 268 (702)
+.|.... -.+.|+.|.+ .+||||||+.|.... ...|+..++.... ...|+...
T Consensus 198 ~lfg~~~g~~tga~~~-~~g~~~~a~~---gtlfldei~~l~~~~-----------Q~~Ll~~l~~~~~-~~~g~~~~-- 259 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTR-KKGKLELADQ---GTLFLDEVGELDQRV-----------QAKLLRVLETGSF-TRLGGNQK-- 259 (368)
T ss_dssp HHHEECSCSSSSCCCC-EECHHHHTTT---SEEEEETGGGSCHHH-----------HHHHHHHHHHSEE-CCBTCCCB--
T ss_pred HhcCccccccCCcccc-cCChHhhcCC---CeEEecChhhCCHHH-----------HHHHHHHHHhCCc-ccCCCCcc--
Confidence 1222211 2346666644 399999999887543 3457777775321 11121111
Q ss_pred CCCCCCCCeEEEEEecCCC-------CCCCccccCCCCcceEEEeCCCCHHH----HHHHHHHhhcCcc----cC---Cc
Q 045279 269 DASDSKPGYVLVIGATNRP-------DAVDPALRRPGRFDREIVLGVPDENA----RVQILSVLTRNLR----VE---GS 330 (702)
Q Consensus 269 ~~~~~~~~~v~vI~atn~~-------~~ld~al~r~~Rf~~~i~~~~p~~~e----r~~Il~~~~~~~~----~~---~~ 330 (702)
.+-++++|+|||.. ..+.+.|.. |+ ..+.+..|+..+ ...++..++.... .. -.
T Consensus 260 -----~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~ 331 (368)
T 3dzd_A 260 -----IEVDIRVISATNKNLEEEIKKGNFREDLYY--RL-SVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELS 331 (368)
T ss_dssp -----EECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBC
T ss_pred -----eeeeeEEEEecCCCHHHHHHcCCccHHHHH--Hh-CCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 12348899999862 133444544 55 345555665544 4445555544321 11 11
Q ss_pred c-cHHHHHhhC-CCCCHHHHHHHHHHHHH
Q 045279 331 F-DLVKIARST-PGFVGADLAALANKAGN 357 (702)
Q Consensus 331 ~-~~~~la~~t-~g~~~~dl~~l~~~a~~ 357 (702)
. .+..+.... +| +.++|.+++..++.
T Consensus 332 ~~a~~~L~~~~wpG-NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 332 EETKEYLMKQEWKG-NVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHHHHTCCCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCc-HHHHHHHHHHHHHH
Confidence 1 133344333 44 66888888887754
No 175
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.84 E-value=8.9e-09 Score=109.65 Aligned_cols=169 Identities=21% Similarity=0.354 Sum_probs=106.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEeccccccc-------------CcCchHHHHHHHHHHHHhCCCeEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNK-------------YVGESELAVRTLFSRARTCSPCIL 526 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~-------------~~g~~~~~~~~~f~~a~~~~~~vl 526 (702)
....++++|++||||+.+|+++....+. .|+.++|+.+... |.|... .....|+.| ..++|
T Consensus 151 ~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a---~~gtl 226 (368)
T 3dzd_A 151 SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELA---DQGTL 226 (368)
T ss_dssp SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHT---TTSEE
T ss_pred cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhc---CCCeE
Confidence 3456899999999999999999987743 3999999875432 111100 011245555 45899
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCC-----C----CCcEEEEEecCCC-------CccCccccCCCccce
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAD-----K----RKGVFVIGATNRP-------DVMDRAVLRPGRFGK 590 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~-----~----~~~~~vI~atn~~-------~~ld~a~~r~gRf~~ 590 (702)
|||||+.+. ...+..||..|+... . ..++.+|+|||.. ..+.+.+.. |+..
T Consensus 227 fldei~~l~-----------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~ 293 (368)
T 3dzd_A 227 FLDEVGELD-----------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSV 293 (368)
T ss_dssp EEETGGGSC-----------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTS
T ss_pred EecChhhCC-----------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCC
Confidence 999999998 888999998887421 1 1256789999863 234444544 5543
Q ss_pred -EEEcCCCCH--HHHHHHHHHHhccC----CCCCCCCHHHHhhhhc-CCCCCH--HHHHHHHHHHHHH
Q 045279 591 -LLYVPLPTP--DERGLILEALARKK----PIDDSVDLHTIAQSKF-CENLSG--ADLAAMMNEAAMA 648 (702)
Q Consensus 591 -~i~~~~p~~--~~r~~il~~~~~~~----~~~~~~~~~~la~~~~-~~~~sg--~dl~~~~~~a~~~ 648 (702)
.|.+|+... ++...++.+++.+. +.. ...+..-+...+ ...|.| ++|+++++.|+..
T Consensus 294 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~-~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 294 FQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN-CFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp EEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC-CCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred eEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC-CCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 467777665 56666666666532 211 111222221122 235666 8888888888743
No 176
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.84 E-value=1.3e-09 Score=111.63 Aligned_cols=121 Identities=17% Similarity=0.243 Sum_probs=74.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCC--eEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGA--NFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~--~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
|+.++..++|+||||||||++|..+|...+. .|+.....+.++.|....+..++.+++.+.... +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 4555666899999999999999999986543 455553344444444455666666666665544 999999999875
Q ss_pred ccCCC-CchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccc
Q 045279 537 KRGKE-GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAV 582 (702)
Q Consensus 537 ~r~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~ 582 (702)
..... ......+.+.+++..|.+.....++.+|++|| +...|+++
T Consensus 197 ~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 44321 11111234555566655544445677888888 55555554
No 177
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.83 E-value=3.4e-09 Score=97.62 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
.+..++|+||+|+|||+++++++..+ +...+.++..++... +....|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 45678999999999999999999987 666888888776543 112357899999998865321
Q ss_pred CCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-CCccC--ccccCCCccceEEEcCC
Q 045279 539 GKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-PDVMD--RAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 539 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-~~~ld--~a~~r~gRf~~~i~~~~ 596 (702)
.+.+..++..+. .....++|+|||. |..+. +.+.+ |+..-..+..
T Consensus 100 --------~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~~l 147 (149)
T 2kjq_A 100 --------QALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVYEV 147 (149)
T ss_dssp --------HHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEECCC
T ss_pred --------HHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeEEe
Confidence 333334443332 1122224456664 44333 66666 7765555543
No 178
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.76 E-value=2.7e-07 Score=97.43 Aligned_cols=186 Identities=16% Similarity=0.171 Sum_probs=112.1
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh---
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV--- 195 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~--- 195 (702)
+......++|.+..++.|.+ +.. ..++|+||+|+|||++++.+++.++..++++++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 44466789999999999887 511 4799999999999999999999987778888876430
Q ss_pred --c---------------------------cc-----cc---c------cHHHHHHHHHHHHhh--CCceEEechhhHhh
Q 045279 196 --S---------------------------GV-----SG---A------SEENIRDLFSKAYRT--APSIVFIDEIDAIA 230 (702)
Q Consensus 196 --~---------------------------~~-----~g---~------~~~~~~~~f~~a~~~--~p~il~iDEid~l~ 230 (702)
. .. .+ . ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 0 00 00 0 011233444444332 38899999999886
Q ss_pred hcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCC---------CCCccccCCCCcc
Q 045279 231 SKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPD---------AVDPALRRPGRFD 301 (702)
Q Consensus 231 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~---------~ld~al~r~~Rf~ 301 (702)
..... .+...|...++.. .++.+|.++.... .....+.. |+.
T Consensus 151 ~~~~~-------~~~~~l~~~~~~~--------------------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~--r~~ 201 (357)
T 2fna_A 151 KLRGV-------NLLPALAYAYDNL--------------------KRIKFIMSGSEMGLLYDYLRVEDPESPLFG--RAF 201 (357)
T ss_dssp GCTTC-------CCHHHHHHHHHHC--------------------TTEEEEEEESSHHHHHHHTTTTCTTSTTTT--CCC
T ss_pred ccCch-------hHHHHHHHHHHcC--------------------CCeEEEEEcCchHHHHHHHhccCCCCcccc--Ccc
Confidence 42111 0111122222211 1255666665421 11222332 665
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHH
Q 045279 302 REIVLGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
..+.+++.+.++..+++...+........ ....+...+.|+.. -+..++
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~ 250 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFG 250 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHH
Confidence 78999999999999999876643322222 23677778888544 344443
No 179
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.75 E-value=6.5e-07 Score=94.30 Aligned_cols=190 Identities=18% Similarity=0.145 Sum_probs=111.1
Q ss_pred CCCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc--
Q 045279 119 EGPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS-- 196 (702)
Q Consensus 119 ~~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~-- 196 (702)
+...-..++|.+..++.|.+.+.. + ..++|+||+|+|||++++.+++..+ ++++++.....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 444567899999999999887632 1 5799999999999999999999875 67777654320
Q ss_pred ---c-----------cc----------------c-------ccHHHHHHHHH-HHHhhCCceEEechhhHhhhcchhhhH
Q 045279 197 ---G-----------VS----------------G-------ASEENIRDLFS-KAYRTAPSIVFIDEIDAIASKRENLQR 238 (702)
Q Consensus 197 ---~-----------~~----------------g-------~~~~~~~~~f~-~a~~~~p~il~iDEid~l~~~~~~~~~ 238 (702)
. .. + ..-..+...+. .+....|.+|+|||++.+.......
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~-- 147 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRG-- 147 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTT--
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccc--
Confidence 0 00 0 01111112222 2222348899999999886410000
Q ss_pred HHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC---C------CCCccccCCCCcceEEEeCCC
Q 045279 239 EMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP---D------AVDPALRRPGRFDREIVLGVP 309 (702)
Q Consensus 239 ~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~---~------~ld~al~r~~Rf~~~i~~~~p 309 (702)
...+...|...++.. .++.+|.++... . .....+. +|+...+.+++.
T Consensus 148 --~~~~~~~L~~~~~~~--------------------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl 203 (350)
T 2qen_A 148 --GKELLALFAYAYDSL--------------------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPF 203 (350)
T ss_dssp --THHHHHHHHHHHHHC--------------------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCC
T ss_pred --hhhHHHHHHHHHHhc--------------------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCC
Confidence 011222233333321 125566555432 1 1122333 266568999999
Q ss_pred CHHHHHHHHHHhhcCcccCC-cccHHHHHhhCCCCCHHHHHHHH
Q 045279 310 DENARVQILSVLTRNLRVEG-SFDLVKIARSTPGFVGADLAALA 352 (702)
Q Consensus 310 ~~~er~~Il~~~~~~~~~~~-~~~~~~la~~t~g~~~~dl~~l~ 352 (702)
+.++..+++...+....... ...+..+...+.|+.. -+..++
T Consensus 204 ~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~-~l~~~~ 246 (350)
T 2qen_A 204 DKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPG-WLVVFG 246 (350)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHH-HHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHH-HHHHHH
Confidence 99999999987665443222 2345567777777543 344443
No 180
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=7.2e-09 Score=95.39 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=46.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
++..++|+||+|+|||+|++++++.+ +..+++++..++... +....|.+|+|||++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 56789999999999999999999987 666888888776443 112357799999998754
No 181
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.72 E-value=1.9e-08 Score=97.71 Aligned_cols=99 Identities=21% Similarity=0.259 Sum_probs=60.0
Q ss_pred CCcccccCHHH----HHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh
Q 045279 121 PRFQDLGGMES----VLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE 193 (702)
Q Consensus 121 ~~~~~i~G~~~----~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~ 193 (702)
.+|+++++.+. +++.+...+... +. ...+.+++|+||||||||++++++++.+ +.+++.+++.+
T Consensus 22 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~------~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 22 ASLSDVDLNDDGRIKAIRFAERFVAEY---EP------GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CCTTSSCCSSHHHHHHHHHHHHHHHHC---CS------SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CCHhhccCCChhHHHHHHHHHHHHHHh---hh------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 47899887543 334444333211 10 0123789999999999999999999887 67888888887
Q ss_pred hhcccccccH-HHHHHHHHHHHhhCCceEEechhhHhh
Q 045279 194 VVSGVSGASE-ENIRDLFSKAYRTAPSIVFIDEIDAIA 230 (702)
Q Consensus 194 l~~~~~g~~~-~~~~~~f~~a~~~~p~il~iDEid~l~ 230 (702)
+......... ..+..++.... .+.+|+|||++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 93 LFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred HHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 6543211110 00122333332 23599999996543
No 182
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.68 E-value=7.7e-08 Score=102.85 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=88.8
Q ss_pred ccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHH-HHHhCCCeEEEec-----hhhhccc-
Q 045279 126 LGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAI-ANETGVPFYKISA-----TEVVSGV- 198 (702)
Q Consensus 126 i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~l-a~~l~~~~~~i~~-----~~l~~~~- 198 (702)
|+|++.+|..|.-.+.-. +.. .+..-||||.|+||| ||++|+++ ++.+....+ +.. ..+....
T Consensus 215 I~G~e~vK~aLll~L~GG--~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC--VGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLK 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTC--CSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEE
T ss_pred cCCCHHHHHHHHHHHcCC--ccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEE
Confidence 899999887776433111 000 223348999999999 99999999 776644332 221 1121110
Q ss_pred --ccccHHHHHHHHHHHHhhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 045279 199 --SGASEENIRDLFSKAYRTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPG 276 (702)
Q Consensus 199 --~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 276 (702)
.| ..-. .+.+..|.+ .++|||||+.+... ....|+..|++....+. |. ..+.
T Consensus 285 ~~tG-~~~~-~G~l~LAdg---Gvl~lDEIn~~~~~-----------~qsaLlEaMEe~~VtI~-G~---------~lpa 338 (506)
T 3f8t_A 285 EDRG-WALR-AGAAVLADG---GILAVDHLEGAPEP-----------HRWALMEAMDKGTVTVD-GI---------ALNA 338 (506)
T ss_dssp ESSS-EEEE-ECHHHHTTT---SEEEEECCTTCCHH-----------HHHHHHHHHHHSEEEET-TE---------EEEC
T ss_pred cCCC-cccC-CCeeEEcCC---CeeehHhhhhCCHH-----------HHHHHHHHHhCCcEEEC-CE---------EcCC
Confidence 11 1100 223334433 39999999887643 34568888887554333 11 2345
Q ss_pred eEEEEEecCCCC-----------CCCccccCCCCcceEE-EeCCCCHH
Q 045279 277 YVLVIGATNRPD-----------AVDPALRRPGRFDREI-VLGVPDEN 312 (702)
Q Consensus 277 ~v~vI~atn~~~-----------~ld~al~r~~Rf~~~i-~~~~p~~~ 312 (702)
++.||||+|+.+ .|++++++ ||+-.+ .++.|+.+
T Consensus 339 rf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 339 RCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPG 384 (506)
T ss_dssp CCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC-----
T ss_pred CeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChh
Confidence 689999999975 78889999 997644 44555543
No 183
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.64 E-value=3.2e-08 Score=105.80 Aligned_cols=216 Identities=14% Similarity=0.071 Sum_probs=120.1
Q ss_pred cCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHH-HHHhCCeEEEE-ecc---cccccCcC
Q 045279 431 VGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAV-ANEAGANFIHI-KGP---ELLNKYVG 505 (702)
Q Consensus 431 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~l-a~~~~~~~~~i-~~~---~l~~~~~g 505 (702)
|.|++.+|..+.-.+... +.. .+...|+||.|+||| ||.+|+++ +..+....+.. .++ .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG--~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC--VGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTC--CSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCC--ccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 778888877664322110 000 122347999999999 99999999 77654332221 111 11111000
Q ss_pred chHH-HHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC-------CCCCcEEEEEecCCCC-
Q 045279 506 ESEL-AVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA-------DKRKGVFVIGATNRPD- 576 (702)
Q Consensus 506 ~~~~-~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~~vI~atn~~~- 576 (702)
.+.. .-...+..| ..+|+|+||++.+. ...+..|+..|+.. .-..++.||+|+|..+
T Consensus 286 ~tG~~~~~G~l~LA---dgGvl~lDEIn~~~-----------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLA---DGGILAVDHLEGAP-----------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHT---TTSEEEEECCTTCC-----------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEc---CCCeeehHhhhhCC-----------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 0000 000122233 45899999999998 78888888888753 1235688999999865
Q ss_pred ----------ccCccccCCCccceEEE-cCCCCHHHH---------HHHHHH---Hhc--cCCCC-CCCCHHHHhh----
Q 045279 577 ----------VMDRAVLRPGRFGKLLY-VPLPTPDER---------GLILEA---LAR--KKPID-DSVDLHTIAQ---- 626 (702)
Q Consensus 577 ----------~ld~a~~r~gRf~~~i~-~~~p~~~~r---------~~il~~---~~~--~~~~~-~~~~~~~la~---- 626 (702)
.|.++++. |||.++. .+.|+.++- .+.++. +++ ..... .+...+.++.
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 67778888 9997654 344443321 011222 222 11111 1111111110
Q ss_pred -hh----------cCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcCC
Q 045279 627 -SK----------FCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKISP 682 (702)
Q Consensus 627 -~~----------~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 682 (702)
+. ..-+.|.+.+..+++-|...|.-+... .++.+|+..|+.-+..
T Consensus 430 tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~-----------~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 430 RREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD-----------DVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS-----------EECHHHHHHHHHHHHH
T ss_pred HhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcC-----------CCCHHHHHHHHHHHHH
Confidence 00 223667888888988777666665443 7999999999886643
No 184
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.64 E-value=6e-08 Score=79.73 Aligned_cols=76 Identities=33% Similarity=0.534 Sum_probs=67.6
Q ss_pred eCCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccc
Q 045279 306 LGVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWW 385 (702)
Q Consensus 306 ~~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~ 385 (702)
-.+|+.++|.+||+.++++..+..++++..+|+.|+||+|+||.++|++|+..++++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~---------------------- 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER---------------------- 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4689999999999999999988888899999999999999999999999999887752
Q ss_pred cCCCChhhhhhhcccHhHHHHHHhccCC
Q 045279 386 RQPWLPEEMERLTITMTDFEEATKMVQP 413 (702)
Q Consensus 386 ~~~~~~~~~~~~~i~~~d~~~~l~~~~p 413 (702)
...|+.+||..++..+.|
T Consensus 66 ----------~~~I~~~df~~Al~~v~p 83 (86)
T 2krk_A 66 ----------RVHVTQEDFEMAVAKVMQ 83 (86)
T ss_dssp ----------CSEECHHHHHHHHHHHHC
T ss_pred ----------CCCCCHHHHHHHHHHHcc
Confidence 146899999999987765
No 185
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.60 E-value=6.5e-08 Score=98.99 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=49.9
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec--hhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISA--TEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~--~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~ 231 (702)
|+.++..++|+||||||||+||..+|...+.++.+++. .+....+....+..+..+++..... + +||||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~-~-LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH-R-VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC-S-EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC-C-EEEEeccccccc
Confidence 45666778999999999999999998875544333333 3222222233344444555555443 3 999999998865
Q ss_pred cc
Q 045279 232 KR 233 (702)
Q Consensus 232 ~~ 233 (702)
..
T Consensus 197 ~~ 198 (331)
T 2vhj_A 197 AA 198 (331)
T ss_dssp --
T ss_pred cc
Confidence 43
No 186
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.60 E-value=1.2e-07 Score=76.69 Aligned_cols=74 Identities=34% Similarity=0.550 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCccccc
Q 045279 307 GVPDENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWR 386 (702)
Q Consensus 307 ~~p~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~ 386 (702)
|+|+.++|.+||+.++++..+..+.++..++..|+||+|+||.++|++|+..++++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~----------------------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----------------------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------------
Confidence 689999999999999999988888899999999999999999999999998887651
Q ss_pred CCCChhhhhhhcccHhHHHHHHhccC
Q 045279 387 QPWLPEEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 387 ~~~~~~~~~~~~i~~~d~~~~l~~~~ 412 (702)
...|+.+||..++..+.
T Consensus 58 ---------~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 58 ---------RVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp ---------CSEECHHHHHHHHHHHH
T ss_pred ---------CCCCCHHHHHHHHHHHH
Confidence 13688999999987653
No 187
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.59 E-value=7e-08 Score=102.30 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=78.5
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhc-
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTT- 536 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~- 536 (702)
++++++..++|+||||+||||++++++...+..++.+..++- . ....+. ......++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~--~----~~~~lg------~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD--R----LNFELG------VAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT--T----HHHHHG------GGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch--h----HHHHHH------HhcchhHHHHHHHHHHHHH
Confidence 367778889999999999999999999988776655433221 0 000111 122446789999998875
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCC
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPL 596 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~ 596 (702)
.|+........ ....+...++|. +.|+++||+++.+ +++++|+|++..++...
T Consensus 232 ~r~l~~~~~~~-~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGIN-NLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHH-HHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcch-HHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 33221111111 223444456553 4578889999999 78999999988776654
No 188
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.57 E-value=6.3e-08 Score=93.38 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=78.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh--------C-CeEEEEecccccccCc----------Cc-----hHHHHHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA--------G-ANFIHIKGPELLNKYV----------GE-----SELAVRTLFSRAR 519 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~--------~-~~~~~i~~~~l~~~~~----------g~-----~~~~~~~~f~~a~ 519 (702)
.-.+++|+||+|||++|..++... | .+++..+..++.-.+. .. ....+...+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 356899999999999998765443 3 5565666665543221 11 111222221112
Q ss_pred hCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCH
Q 045279 520 TCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTP 599 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~ 599 (702)
...++||+|||++.+.+.+...... . .++..+... .....-||.+|+.+..|+.++.. |++..+.++.|..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~--~----rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI--P----ENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKM 155 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC--C----HHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSS
T ss_pred ccCceEEEEEChhhhccCccccchh--H----HHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCccc
Confidence 2357899999999997665322111 1 244455432 33455667778889999999887 9999998887643
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.53 E-value=9.1e-09 Score=99.92 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=47.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
.+++|+||||||||++|++++..+ +.+++.++++++...+... ....+..++.... .+.+|||||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 789999999999999999999987 6778888887765432111 0001123333333 23699999997654
No 190
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.51 E-value=5.7e-08 Score=93.71 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=76.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHH--------hC-CCeEEEechhhhcccc----------cc-----cHHHHHHHHHHHH
Q 045279 159 AGILLYGPPGCGKTKLAHAIANE--------TG-VPFYKISATEVVSGVS----------GA-----SEENIRDLFSKAY 214 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~--------l~-~~~~~i~~~~l~~~~~----------g~-----~~~~~~~~f~~a~ 214 (702)
.-+|++|+||||||++|..++.. .+ .+++..++.++.-... .. ....+..++..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 35899999999999998886433 23 6666666665543221 11 112222222112
Q ss_pred hhCCceEEechhhHhhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccc
Q 045279 215 RTAPSIVFIDEIDAIASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPAL 294 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al 294 (702)
.+.++||+|||++.+.+.+...... ..++..++... ...+.+|.+|+++..++.++
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~~r------------------~~~~~iil~tq~~~~l~~~l 140 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNTHR------------------HQGIDIFVLTQGPKLLDQNL 140 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGGTT------------------TTTCEEEEEESCGGGBCHHH
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHhcC------------------cCCeEEEEECCCHHHHhHHH
Confidence 3456799999999996544221110 01333333211 11256777888899999999
Q ss_pred cCCCCcceEEEeCCCCH
Q 045279 295 RRPGRFDREIVLGVPDE 311 (702)
Q Consensus 295 ~r~~Rf~~~i~~~~p~~ 311 (702)
+. |+...+++..|..
T Consensus 141 r~--ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 141 RT--LVRKHYHIASNKM 155 (199)
T ss_dssp HT--TEEEEEEEEECSS
T ss_pred HH--HhheEEEEcCccc
Confidence 98 9999998887643
No 191
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.47 E-value=1.6e-07 Score=89.47 Aligned_cols=33 Identities=15% Similarity=0.268 Sum_probs=28.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
+++..+++||+||||||||++|.++|+.+...+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 355567899999999999999999999986544
No 192
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.45 E-value=1.5e-07 Score=97.71 Aligned_cols=97 Identities=21% Similarity=0.273 Sum_probs=58.8
Q ss_pred CCcccccCHH----HHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEech
Q 045279 121 PRFQDLGGME----SVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISAT 192 (702)
Q Consensus 121 ~~~~~i~G~~----~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~ 192 (702)
.+|+++.+-. .+++.+.+.+... + -....+++|+||||||||+||+++|+.+. .+++.+++.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~---~-------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQY---P-------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHC---S-------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhc---c-------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 4899988633 3334444333211 1 11357899999999999999999988654 788888888
Q ss_pred hhhcccccccH-HHHHHHHHHHHhhCCceEEechhhHh
Q 045279 193 EVVSGVSGASE-ENIRDLFSKAYRTAPSIVFIDEIDAI 229 (702)
Q Consensus 193 ~l~~~~~g~~~-~~~~~~f~~a~~~~p~il~iDEid~l 229 (702)
++......... ..+..++... ..+.+|+|||++..
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC-
T ss_pred HHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 76554322111 1112222222 23459999999544
No 193
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.44 E-value=4.1e-06 Score=88.12 Aligned_cols=162 Identities=21% Similarity=0.225 Sum_probs=92.2
Q ss_pred cccccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc------
Q 045279 427 KWEDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL------ 500 (702)
Q Consensus 427 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~------ 500 (702)
.-..+.|-+...+.+.+.+.. + ..++++||+|+|||++++.+++..+ .+.+++....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCC
Confidence 345567777766666554421 1 5789999999999999999999876 5556543321
Q ss_pred ------c---cCcCc---------------------hHHHHHHHHH----HHHhCCCeEEEEeCcchhhcccCCCCchHH
Q 045279 501 ------N---KYVGE---------------------SELAVRTLFS----RARTCSPCILFFDEVDALTTKRGKEGGWVV 546 (702)
Q Consensus 501 ------~---~~~g~---------------------~~~~~~~~f~----~a~~~~~~vl~iDEid~l~~~r~~~~~~~~ 546 (702)
. ...+. ....+..++. .+....|.+|+|||++.+...... ..
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~-~~--- 148 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR-GG--- 148 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT-TT---
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc-ch---
Confidence 0 00000 0011222222 222224899999999998741100 01
Q ss_pred HHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC---------ccccCCCccceEEEcCCCCHHHHHHHHHHHhccCC
Q 045279 547 ERLLNQLLIELDGADKRKGVFVIGATNRPDVMD---------RAVLRPGRFGKLLYVPLPTPDERGLILEALARKKP 614 (702)
Q Consensus 547 ~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld---------~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~ 614 (702)
..++..|-..++.. .++.+|+++.....+. ..+ .||+...+.+++.+.++..+++...+...+
T Consensus 149 ~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 149 KELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp HHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 23333332333322 3555665654321111 112 246767899999999999999988776544
No 194
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.43 E-value=9.9e-08 Score=98.98 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=47.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccccCcCc-hHHHHHHHHHHHHhCCCeEEEEeCcchhh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLNKYVGE-SELAVRTLFSRARTCSPCILFFDEVDALT 535 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~~~~g~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~ 535 (702)
...+++|+||||||||++|.++|..+ +.+++.+++++++..+... ....+..++.... .+.+|||||++...
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 35789999999999999999999865 4778888887765432221 1111222233332 34699999997654
No 195
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.42 E-value=6.5e-07 Score=73.99 Aligned_cols=75 Identities=27% Similarity=0.397 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCC
Q 045279 310 DENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPW 389 (702)
Q Consensus 310 ~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (702)
+.++|.+||+.++++..+..+.++..+|..|+||+|+||.++|++|+..++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 567899999999999998888999999999999999999999999999888761
Q ss_pred ChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 390 LPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 390 ~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
...|+.+||..++..+.+...
T Consensus 56 ------~~~i~~~df~~Al~~v~~~~~ 76 (88)
T 3vlf_B 56 ------RKVATEKDFLKAVDKVISGYK 76 (88)
T ss_dssp ------CSSBCHHHHHHHHHHHTC---
T ss_pred ------cccCCHHHHHHHHHHHhcCcc
Confidence 125899999999998876543
No 196
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.41 E-value=8.5e-06 Score=90.98 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=66.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc--------------------------ccCcC--ch
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL--------------------------NKYVG--ES 507 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~--------------------------~~~~g--~~ 507 (702)
++.++.-+++.||||+|||++++.++... +...+.+...+-. ..+.. ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 56667778999999999999999998764 3344444322110 00111 23
Q ss_pred HHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 508 ELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 508 ~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+...+.+++.+....|.+|+||=+..+...- .+......+..++..+.. .++.||++|+..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~---~~~~~~~~i~~ll~~l~~----~g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV---SNNAFRQFVIGVTGYAKQ----EEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS---CHHHHHHHHHHHHHHHHH----TTCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC---ChHHHHHHHHHHHHHHHh----CCCEEEEEECcc
Confidence 4556777888888899999999655554321 111135555566666542 234555566554
No 197
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.41 E-value=2.1e-06 Score=90.64 Aligned_cols=158 Identities=18% Similarity=0.129 Sum_probs=91.1
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc-----c---------------------------cCc-------
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL-----N---------------------------KYV------- 504 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~-----~---------------------------~~~------- 504 (702)
..++++||+|+|||++++.+++..+..++.+++.... + ...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 4789999999999999999999887777777765420 0 000
Q ss_pred C-c------hHHHHHHHHHHHHhC--CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 505 G-E------SELAVRTLFSRARTC--SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 505 g-~------~~~~~~~~f~~a~~~--~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+ . ....+..++...... .|.+|+|||++.+....+.. . ...+..+.... .++.+|+++...
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~---~-~~~l~~~~~~~------~~~~~i~~g~~~ 180 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN---L-LPALAYAYDNL------KRIKFIMSGSEM 180 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC---C-HHHHHHHHHHC------TTEEEEEEESSH
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh---H-HHHHHHHHHcC------CCeEEEEEcCch
Confidence 0 0 011233444444332 38899999999987421111 1 22333333221 245566666543
Q ss_pred CccCc-------cccCCCccceEEEcCCCCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCCC
Q 045279 576 DVMDR-------AVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLS 634 (702)
Q Consensus 576 ~~ld~-------a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~s 634 (702)
..+.. .-.-.+|+...+.+++++.++..+++...+...+...+ +...+. ..+.|+.
T Consensus 181 ~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i~--~~t~G~P 243 (357)
T 2fna_A 181 GLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVVY--EKIGGIP 243 (357)
T ss_dssp HHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHHH--HHHCSCH
T ss_pred HHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHHH--HHhCCCH
Confidence 21111 00012466678999999999999999887654333222 234444 3455654
No 198
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.40 E-value=2e-07 Score=88.80 Aligned_cols=111 Identities=15% Similarity=0.206 Sum_probs=63.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccccccCcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhccc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKR 538 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r 538 (702)
+.+...+++||||||||||++|.++|+.+...++.+..+. +.+. +..+ ....|++|||+|.-.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~----------l~~l--~~~kIiiLDEad~~~--- 116 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW----------LEPL--TDTKVAMLDDATTTC--- 116 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG----------GGGG--TTCSSEEEEEECHHH---
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh----------hccc--CCCCEEEEECCCchh---
Confidence 3444567999999999999999999999866543321110 0000 1111 124599999998543
Q ss_pred CCCCchHHHHHH-HHHHHhhhCCC-------CC----CcEEEEEecCCCCccC---ccccCCCccceEEEcCCC
Q 045279 539 GKEGGWVVERLL-NQLLIELDGAD-------KR----KGVFVIGATNRPDVMD---RAVLRPGRFGKLLYVPLP 597 (702)
Q Consensus 539 ~~~~~~~~~~~~-~~ll~~l~~~~-------~~----~~~~vI~atn~~~~ld---~a~~r~gRf~~~i~~~~p 597 (702)
.+.+ ..+-..++|.. .. ...-+|.|||..-.-+ +.+.+ |+. .+.|+.|
T Consensus 117 --------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~~ 179 (212)
T 1tue_A 117 --------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPNA 179 (212)
T ss_dssp --------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCSC
T ss_pred --------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCCC
Confidence 2333 33445566631 11 1234667898743223 33444 774 6777643
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.38 E-value=2.3e-06 Score=80.99 Aligned_cols=27 Identities=30% Similarity=0.594 Sum_probs=23.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANF 491 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~ 491 (702)
.+.|+||+|+||||++++++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 468999999999999999999876443
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.28 E-value=3.9e-07 Score=96.57 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=74.5
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcccccccHHHHHHHHHHHHhhCCceEEechhhHhhh-
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSGVSGASEENIRDLFSKAYRTAPSIVFIDEIDAIAS- 231 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~- 231 (702)
++++++..++|+||||+||||++++|++.++..++.+....- .....+..+ ....++|+||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~------~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVA------IDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGG------TTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHh------cchhHHHHHHHHHHHHH
Confidence 477888999999999999999999999998776654332210 001111111 2335789999988764
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCC
Q 045279 232 KRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGV 308 (702)
Q Consensus 232 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~ 308 (702)
.+......... ....+...+++ .+.|+.++|+++.+ +++.+++|++..+...+
T Consensus 232 ~r~l~~~~~~~-~~~~l~~~ldG----------------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLPSGQGIN-NLDNLRDYLDG----------------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCCCCSHHH-HHHTTHHHHHC----------------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HhhccccCcch-HHHHHHHHhcC----------------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 11100000000 11233444442 25678889999999 78999888876554433
No 201
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.25 E-value=1.2e-06 Score=71.67 Aligned_cols=75 Identities=25% Similarity=0.403 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCC
Q 045279 310 DENARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPW 389 (702)
Q Consensus 310 ~~~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (702)
+.++|.+||+.++++..+..+.++..++..|+||+|+||.++|++|+..++++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 678999999999999988788899999999999999999999999988765431
Q ss_pred ChhhhhhhcccHhHHHHHHhccCCCCc
Q 045279 390 LPEEMERLTITMTDFEEATKMVQPSSR 416 (702)
Q Consensus 390 ~~~~~~~~~i~~~d~~~~l~~~~p~~~ 416 (702)
...|+.+||..++..+.|+..
T Consensus 56 ------~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 ------RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp ------CSSBCHHHHHHHHHHHCC---
T ss_pred ------cCCcCHHHHHHHHHHHccCch
Confidence 146899999999999887653
No 202
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.13 E-value=7.1e-06 Score=86.42 Aligned_cols=180 Identities=15% Similarity=0.069 Sum_probs=110.5
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CC-eEEEEecccccccCcCchHHHHHHHHHHHH----hCCCeEEEEeCcc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GA-NFIHIKGPELLNKYVGESELAVRTLFSRAR----TCSPCILFFDEVD 532 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~-~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid 532 (702)
.....+||+||+|+||++.++.++..+ +. ++..+.. -+ ...++.+++.+. -....|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cC--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 345678999999999999999998865 32 2222211 11 123455655553 2457899999999
Q ss_pred h-hhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC-----CCccCccccCCCccceEEEcCCCCHHHHHHHH
Q 045279 533 A-LTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR-----PDVMDRAVLRPGRFGKLLYVPLPTPDERGLIL 606 (702)
Q Consensus 533 ~-l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~-----~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il 606 (702)
. +. ....+.|+..++.... ..++|+++++. ...+-+++.+ |+ .++.|.+++.++....+
T Consensus 87 ~kl~-----------~~~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 87 NGPN-----------AAINEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp SCCC-----------TTHHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred CCCC-----------hHHHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 8 76 4567788888875432 33444444331 2356667766 77 58899999999999999
Q ss_pred HHHhccCCCCCC-CCHHHHhhhhcCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccHHHHHHHHhhcC
Q 045279 607 EALARKKPIDDS-VDLHTIAQSKFCENLSGADLAAMMNEAAMAALEDKLISSKSSSDVTPFTIKLTHFEQALSKIS 681 (702)
Q Consensus 607 ~~~~~~~~~~~~-~~~~~la~~~~~~~~sg~dl~~~~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 681 (702)
+..+++.++.-+ ..++.++ ..+|+|++.+.++.-..++-. . ...|+.+++...+....
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~------~~~~gdl~~~~~elekl~l~~--~---------~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLC------YCYEGNLLALAQALERLSLLW--P---------DGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHH------HSSTTCHHHHHHHHHHHHHHC--T---------TCEECHHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCHHHHHHHH------HHhchHHHHHHHHHHHHHHhc--C---------CCCCCHHHHHHHHhhhh
Confidence 998887765433 2344555 234556665555443332210 0 01467777666655543
No 203
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.07 E-value=1.5e-05 Score=79.59 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGA 489 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~ 489 (702)
++..+++|+||||||||++|.++|+....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34568999999999999999999997644
No 204
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.03 E-value=8.4e-06 Score=81.42 Aligned_cols=29 Identities=38% Similarity=0.549 Sum_probs=25.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
++.++++|+||||||||++|.+||+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 44678999999999999999999997643
No 205
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.87 E-value=7.2e-06 Score=66.70 Aligned_cols=69 Identities=25% Similarity=0.305 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhcCcccCCcccHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccccCccccccCcccccCCCCh
Q 045279 312 NARVQILSVLTRNLRVEGSFDLVKIARSTPGFVGADLAALANKAGNLAMKRIIDQRKSELSGNSIAEQHSDDWWRQPWLP 391 (702)
Q Consensus 312 ~er~~Il~~~~~~~~~~~~~~~~~la~~t~g~~~~dl~~l~~~a~~~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (702)
++|.+||+.++++..+..+.++..++..|+||+|+||.++|++|+..++++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~---------------------------- 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN---------------------------- 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT----------------------------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc----------------------------
Confidence 4688999999999888778899999999999999999999999999887751
Q ss_pred hhhhhhcccHhHHHHHHhccC
Q 045279 392 EEMERLTITMTDFEEATKMVQ 412 (702)
Q Consensus 392 ~~~~~~~i~~~d~~~~l~~~~ 412 (702)
...|+.+||..++..+.
T Consensus 53 ----~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 53 ----RYVILQSDLEEAYATQV 69 (82)
T ss_dssp ----CSEECHHHHHHHHHTTC
T ss_pred ----cCCcCHHHHHHHHHHHH
Confidence 13688999999998764
No 206
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.87 E-value=5.8e-05 Score=71.28 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=23.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
.+.|+||+|+|||||++.|++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 488999999999999999999886443
No 207
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.86 E-value=4.8e-05 Score=79.97 Aligned_cols=156 Identities=16% Similarity=0.078 Sum_probs=97.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC---C-CeEEEechhhhcccccccHHHHHHHHHHHH----hhCCceEEechhhH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG---V-PFYKISATEVVSGVSGASEENIRDLFSKAY----RTAPSIVFIDEIDA 228 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~---~-~~~~i~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~ 228 (702)
....+||+||+|+||++.++.+++.+. . ++..+.. .+. ..+..+++.+. .+...|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DPN--TDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CTT--CCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cCC--CCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 346799999999999999999988652 1 2111111 011 22344444433 34567999999987
Q ss_pred -hhhcchhhhHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCC------CCCCccccCCCCcc
Q 045279 229 -IASKRENLQREMERRIVTQLMTCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRP------DAVDPALRRPGRFD 301 (702)
Q Consensus 229 -l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~------~~ld~al~r~~Rf~ 301 (702)
+... ..+.|+..+++. +.++++|.+++.+ ..+.+++.+ |.
T Consensus 88 kl~~~-----------~~~aLl~~le~p-------------------~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~- 134 (343)
T 1jr3_D 88 GPNAA-----------INEQLLTLTGLL-------------------HDDLLLIVRGNKLSKAQENAAWFTALAN--RS- 134 (343)
T ss_dssp CCCTT-----------HHHHHHHHHTTC-------------------BTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-
T ss_pred CCChH-----------HHHHHHHHHhcC-------------------CCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-
Confidence 6432 234567777642 2234444444443 346677888 87
Q ss_pred eEEEeCCCCHHHHHHHHHHhhcCcccCCccc-HHHHHhhCCCCCHHHHHHHHHHH
Q 045279 302 REIVLGVPDENARVQILSVLTRNLRVEGSFD-LVKIARSTPGFVGADLAALANKA 355 (702)
Q Consensus 302 ~~i~~~~p~~~er~~Il~~~~~~~~~~~~~~-~~~la~~t~g~~~~dl~~l~~~a 355 (702)
.++.|..++..+....+...++..+...+.+ +..++..+.| +.+++.+.++..
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl 188 (343)
T 1jr3_D 135 VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERL 188 (343)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHH
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHH
Confidence 6799999999999999988887766544433 4456655544 666665555544
No 208
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.84 E-value=1.9e-05 Score=77.77 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=60.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc---------------------------------c
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN---------------------------------K 502 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~---------------------------------~ 502 (702)
|+.++..++|+||||+|||++++.++... +..++.+....... .
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 45566678999999999999999998654 44444443221100 0
Q ss_pred Cc---CchHHHHHHHHHHHHhCCCe--EEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 503 YV---GESELAVRTLFSRARTCSPC--ILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 503 ~~---g~~~~~~~~~f~~a~~~~~~--vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
|. .......+.+...+....|. +|+|||...+... ......+++..|..... ..++.||++|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~----d~~~~~~~~~~l~~~~~----~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD----KPAMARKISYYLKRVLN----KWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS----CGGGHHHHHHHHHHHHH----HTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC----CHHHHHHHHHHHHHHHH----hCCCeEEEEeccC
Confidence 00 01122233344444455788 9999999987532 11122344444333222 2346677777765
No 209
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.82 E-value=4.5e-05 Score=75.69 Aligned_cols=78 Identities=17% Similarity=0.139 Sum_probs=50.4
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHH--h-------CCeEEEEeccccccc--------CcC---------------c
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANE--A-------GANFIHIKGPELLNK--------YVG---------------E 506 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~--~-------~~~~~~i~~~~l~~~--------~~g---------------~ 506 (702)
|++++.-++|+||||+|||++++.++.. + +...+.++..+.... .+| .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566677899999999999999999985 2 456777765541100 001 0
Q ss_pred hHHH----HHHHHHHHHhCCCeEEEEeCcchhhc
Q 045279 507 SELA----VRTLFSRARTCSPCILFFDEVDALTT 536 (702)
Q Consensus 507 ~~~~----~~~~f~~a~~~~~~vl~iDEid~l~~ 536 (702)
+... +..+.+.+....|.+|+|||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1111 22233444456899999999988764
No 210
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.81 E-value=6.1e-05 Score=73.44 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=32.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
|+.++.-++++||||+|||++++.++...+.+++.++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4666777899999999999999999886677777777554
No 211
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.79 E-value=8.6e-05 Score=77.83 Aligned_cols=114 Identities=23% Similarity=0.253 Sum_probs=67.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccccc----------------CcCchHHHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNK----------------YVGESELAVRTLFSRAR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~g~~~~~~~~~f~~a~ 519 (702)
|++++.-++++||||+|||+++..++..+ +..++.++....... .....+..+..+-..++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45666678999999999999999998764 566777776543221 01112222322222334
Q ss_pred hCCCeEEEEeCcchhhcc-c--C--CCC-chHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 520 TCSPCILFFDEVDALTTK-R--G--KEG-GWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~-r--~--~~~-~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
...+.+++||.+..+.+. . + .+. -....+.+.+++..|.......++.||++.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 467899999998888751 1 1 111 112345566666666555444555565544
No 212
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.79 E-value=0.00032 Score=79.41 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=94.5
Q ss_pred CCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHH-------hCCCeEEEechh
Q 045279 121 PRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANE-------TGVPFYKISATE 193 (702)
Q Consensus 121 ~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~-------l~~~~~~i~~~~ 193 (702)
.....++|.+..+++|.+.+.. .......++|+||+|+|||+||+.++.. +...++.++.+.
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 3557799999999999987732 1123456999999999999999988642 222344444322
Q ss_pred h-----hcc----------------cccccHHHHHHHHHHHHhh--CCceEEechhhHhhhcchhhhHHHHHHHHHHHHH
Q 045279 194 V-----VSG----------------VSGASEENIRDLFSKAYRT--APSIVFIDEIDAIASKRENLQREMERRIVTQLMT 250 (702)
Q Consensus 194 l-----~~~----------------~~g~~~~~~~~~f~~a~~~--~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 250 (702)
. ... ........+...+...... .|.+|+||+++... .+
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-----------------~l- 251 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-----------------VL- 251 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-----------------HH-
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-----------------HH-
Confidence 1 000 0011112223333333333 67899999996311 11
Q ss_pred HHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEE-eCCCCHHHHHHHHHHhhcCcccCC
Q 045279 251 CMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIV-LGVPDENARVQILSVLTRNLRVEG 329 (702)
Q Consensus 251 ~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~-~~~p~~~er~~Il~~~~~~~~~~~ 329 (702)
+.+ +....||.||....... .+. +.. ..+. +...+.++-.++|...........
T Consensus 252 --~~l-------------------~~~~~ilvTsR~~~~~~-~~~--~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~ 306 (591)
T 1z6t_A 252 --KAF-------------------DSQCQILLTTRDKSVTD-SVM--GPK-YVVPVESSLGKEKGLEILSLFVNMKKADL 306 (591)
T ss_dssp --HTT-------------------CSSCEEEEEESCGGGGT-TCC--SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGS
T ss_pred --HHh-------------------cCCCeEEEECCCcHHHH-hcC--CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccc
Confidence 111 11246666776533111 111 122 2222 246788999999987765422122
Q ss_pred cccHHHHHhhCCCCCH
Q 045279 330 SFDLVKIARSTPGFVG 345 (702)
Q Consensus 330 ~~~~~~la~~t~g~~~ 345 (702)
......+++.+.|...
T Consensus 307 ~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 307 PEQAHSIIKECKGSPL 322 (591)
T ss_dssp CTHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHhCCCcH
Confidence 3346678888887654
No 213
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.70 E-value=5.1e-05 Score=79.72 Aligned_cols=78 Identities=27% Similarity=0.328 Sum_probs=50.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cC------------chHHHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VG------------ESELAVRTLFSRAR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g------------~~~~~~~~~f~~a~ 519 (702)
|++++.-++++||||+|||++|..++... +..++.++...-.... .| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56666778999999999999999888654 5566666654322110 11 11222222222333
Q ss_pred hCCCeEEEEeCcchhhc
Q 045279 520 TCSPCILFFDEVDALTT 536 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~ 536 (702)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 55799999999999874
No 214
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.68 E-value=0.00011 Score=77.39 Aligned_cols=115 Identities=26% Similarity=0.351 Sum_probs=67.0
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cC-----------chHHHHHHHHHH-HH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VG-----------ESELAVRTLFSR-AR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g-----------~~~~~~~~~f~~-a~ 519 (702)
|++++.-++++||||+|||++|..++..+ +.+++.++...-.... .| .+...+...+.. ++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56667778999999999999999887754 5677777654422210 00 111222223322 33
Q ss_pred hCCCeEEEEeCcchhhcccCCCC--ch----HHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 520 TCSPCILFFDEVDALTTKRGKEG--GW----VVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~~~~--~~----~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
...+++|+||.+..+.+.....+ +. ...+.+.+++..|.......++.||++..
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 45789999999999885321110 10 12245566666665444445566665543
No 215
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.66 E-value=0.00032 Score=69.75 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=24.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIA 179 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la 179 (702)
|++++..++|+||+|+|||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56788899999999999999999998
No 216
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.66 E-value=6.6e-05 Score=73.73 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=24.8
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|+.++.-+.|+||+|+||||+++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 55666678999999999999999999854
No 217
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.66 E-value=7.5e-05 Score=74.36 Aligned_cols=129 Identities=19% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHH--HH--hCCeEEEEecccccc------cCcC-----------------------
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVA--NE--AGANFIHIKGPELLN------KYVG----------------------- 505 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la--~~--~~~~~~~i~~~~l~~------~~~g----------------------- 505 (702)
|+.++.-+.|+||+|+||||++++++ .. .+...+.+....... ..+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 45666678999999999999999998 33 234444443321100 0000
Q ss_pred -------------chHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 506 -------------ESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 506 -------------~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
........+...+....|.+|+|||.-.+..... ......+.+..++..+. ..++.||++|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~--d~~~~~~~l~~l~~~l~----~~g~tii~vt 179 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE--EERKIREVLLKLNTILL----EMGVTTILTT 179 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS--SGGGHHHHHHHHHHHHH----HHCCEEEEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC--CHHHHHHHHHHHHHHHH----HCCCeEEEEE
Confidence 0111223333444557899999999887764221 11222445666666663 2345677788
Q ss_pred CCCCccC-----ccccCCCcc-ceEEEcC
Q 045279 573 NRPDVMD-----RAVLRPGRF-GKLLYVP 595 (702)
Q Consensus 573 n~~~~ld-----~a~~r~gRf-~~~i~~~ 595 (702)
+..+... +.+.. -+ |.++.+.
T Consensus 180 H~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 180 EAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp CCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred CCCCCCcccccccChhh--EeeeEEEEEe
Confidence 8766552 22222 35 7777664
No 218
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.65 E-value=0.0002 Score=70.22 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=29.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEe
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKIS 190 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~ 190 (702)
|++++..++|+||||+|||||++.++..+ +..++.++
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56777889999999999999999998654 44555544
No 219
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.61 E-value=0.00012 Score=68.74 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=31.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
..|+|+|+||+||||+++.|++.++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 469999999999999999999999988887765543
No 220
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.56 E-value=3.6e-05 Score=73.16 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=37.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC--------cCc-----hHHHHHHHHHHHHhCCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY--------VGE-----SELAVRTLFSRARTCSPCILFF 528 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~--------~g~-----~~~~~~~~f~~a~~~~~~vl~i 528 (702)
-.+++||+|+|||+++..++..+ +..++.+.... -.+| .|. .......+++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 46899999999999986665543 55554443220 0010 000 0001223333332 25689999
Q ss_pred eCcchhh
Q 045279 529 DEVDALT 535 (702)
Q Consensus 529 DEid~l~ 535 (702)
||+..+.
T Consensus 83 DE~Q~~~ 89 (184)
T 2orw_A 83 DEVQFFN 89 (184)
T ss_dssp CCGGGSC
T ss_pred ECcccCC
Confidence 9999875
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.56 E-value=0.00029 Score=68.47 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=33.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~ 193 (702)
|++++.-++|+||||+|||||+..++...+.++++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 5778888999999999999999999885566777776543
No 222
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.55 E-value=0.00016 Score=75.96 Aligned_cols=100 Identities=20% Similarity=0.293 Sum_probs=62.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecc-cccc---------cCcCchHHHHHHHHHHHHhCCCeEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGP-ELLN---------KYVGESELAVRTLFSRARTCSPCIL 526 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~-~l~~---------~~~g~~~~~~~~~f~~a~~~~~~vl 526 (702)
.+...+++.||+|+||||++++++..+ +..++.+... ++.- ..++.....+...+..|....|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 344568899999999999999998865 3444443321 1110 0112112234567888888999999
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
++||.-. .+....++.... .+..||++++..+.+
T Consensus 201 llDEp~d-------------~e~~~~~~~~~~-----~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 201 LVGEMRD-------------LETIRLALTAAE-----TGHLVFGTLHTTSAA 234 (356)
T ss_dssp EESCCCS-------------HHHHHHHHHHHH-----TTCEEEEEESCSSHH
T ss_pred ecCCCCC-------------HHHHHHHHHHHh-----cCCEEEEEEccChHH
Confidence 9999841 334444444432 233578888887655
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.55 E-value=0.00028 Score=69.86 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=32.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH--h-------CCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE--T-------GVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~--l-------~~~~~~i~~~~ 193 (702)
|++++.-++|+||||+|||||++.++.. + +...++++...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5778888999999999999999999984 3 34566666544
No 224
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.53 E-value=0.00011 Score=77.14 Aligned_cols=115 Identities=25% Similarity=0.359 Sum_probs=65.4
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cC-----------chHHHHHHHHHH-HH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VG-----------ESELAVRTLFSR-AR 519 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g-----------~~~~~~~~~f~~-a~ 519 (702)
|++++.-++++||||+|||++|..+|..+ +.+++.++........ .| .+...+..++.. ++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56677778999999999999999888754 5677777764322110 00 112223333332 23
Q ss_pred hCCCeEEEEeCcchhhcccC--CCCch----HHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 520 TCSPCILFFDEVDALTTKRG--KEGGW----VVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 520 ~~~~~vl~iDEid~l~~~r~--~~~~~----~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
...+.+|+||.+..+..... ...++ ...+.+.+++..|.......++.||++..
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq 198 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 198 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 46789999999998874221 00000 11234455555554333334556665543
No 225
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.52 E-value=0.00024 Score=71.35 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=46.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecc-ccc-c--------cCcCchHHHHHHHHHHHHhCCCeE
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGP-ELL-N--------KYVGESELAVRTLFSRARTCSPCI 525 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~-~l~-~--------~~~g~~~~~~~~~f~~a~~~~~~v 525 (702)
..++.-++++||+|+||||++++++... ...++....+ ++. . ..+|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 4556668999999999999999999865 2233222110 010 0 011111123466777777779999
Q ss_pred EEEeCcc
Q 045279 526 LFFDEVD 532 (702)
Q Consensus 526 l~iDEid 532 (702)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999974
No 226
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.00021 Score=75.06 Aligned_cols=116 Identities=19% Similarity=0.180 Sum_probs=65.6
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccccccc--------CcC----------------
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLNK--------YVG---------------- 505 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~--------~~g---------------- 505 (702)
|++++.-++++||||+|||++|..+|... +..++.++....+.. ..|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56667778999999999999999998862 456777766542110 000
Q ss_pred chH---HHHHHHHHHHHh--CCCeEEEEeCcchhhcccCCCCchHH--HHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 506 ESE---LAVRTLFSRART--CSPCILFFDEVDALTTKRGKEGGWVV--ERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 506 ~~~---~~~~~~f~~a~~--~~~~vl~iDEid~l~~~r~~~~~~~~--~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
..+ ..+..+...+.. ..+.+|+||.+..+....-.+.+... ...+.+++..|.......++.||+++..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 011 112222333444 67899999999988743211101111 1234555554444333445566655543
No 227
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.50 E-value=5.6e-05 Score=70.88 Aligned_cols=21 Identities=33% Similarity=0.430 Sum_probs=17.8
Q ss_pred CCcceEEEcCCCCChhHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKA 482 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~ 482 (702)
.+.-+.|+||+|+||||++++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 445578999999999999993
No 228
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.49 E-value=0.00012 Score=76.34 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=66.3
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEecccccc---------cC------------cC---
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLN---------KY------------VG--- 505 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~---------~~------------~g--- 505 (702)
|++++.-++++||||+|||++|..+|... +..++.++....+. .+ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56667778999999999999999998864 45677777654210 00 00
Q ss_pred chHH---HHHHHHHHHHh-CCCeEEEEeCcchhhcccCCCCch--HHHHHHHHHHHhhhCCCCCCcEEEEEecC
Q 045279 506 ESEL---AVRTLFSRART-CSPCILFFDEVDALTTKRGKEGGW--VVERLLNQLLIELDGADKRKGVFVIGATN 573 (702)
Q Consensus 506 ~~~~---~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~--~~~~~~~~ll~~l~~~~~~~~~~vI~atn 573 (702)
..+. .+..+...++. ..+.+|+||.+..+......+.+. .....+.+++..|.......++.||++..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq 256 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQ 256 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 1111 12233334444 678999999999987432111111 11224555555554443344555665543
No 229
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.48 E-value=0.00011 Score=77.46 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 444557899999999999999999855
No 230
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=6.9e-05 Score=72.10 Aligned_cols=36 Identities=39% Similarity=0.582 Sum_probs=29.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.+.++..++|+|||||||||+++.|++.++.+++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 345667899999999999999999999999887543
No 231
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.47 E-value=0.00028 Score=73.88 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=51.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc---------------cccccHHHHHHHHHH-HH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG---------------VSGASEENIRDLFSK-AY 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~---------------~~g~~~~~~~~~f~~-a~ 214 (702)
|++++.-++|+||||+|||||+..++..+ +..+++++....... ........+...+.. ..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 67788899999999999999999998764 566777776542110 001111122222222 22
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 36788999999987764
No 232
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.47 E-value=0.00023 Score=74.86 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=32.3
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccc
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPE 498 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~ 498 (702)
.|++++.-+.|+||||+|||++++.++... +..++.++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 466677778999999999999999999876 24557776544
No 233
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.45 E-value=0.00015 Score=75.84 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 444557899999999999999999855
No 234
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.45 E-value=0.0012 Score=81.52 Aligned_cols=172 Identities=12% Similarity=0.094 Sum_probs=98.9
Q ss_pred CCCcccccCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---C----CCeEEEech
Q 045279 120 GPRFQDLGGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---G----VPFYKISAT 192 (702)
Q Consensus 120 ~~~~~~i~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~----~~~~~i~~~ 192 (702)
+.....++|.+..+++|.+.+... -....-|.|+|+.|+|||+||+.+++.. . ..++.++.+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 335567999999999999877321 1234568999999999999999887652 2 223344433
Q ss_pred hhhc------------c---------cccccHHHHHHHHHHHHhhC--CceEEechhhHhhhcchhhhHHHHHHHHHHHH
Q 045279 193 EVVS------------G---------VSGASEENIRDLFSKAYRTA--PSIVFIDEIDAIASKRENLQREMERRIVTQLM 249 (702)
Q Consensus 193 ~l~~------------~---------~~g~~~~~~~~~f~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 249 (702)
.... . ........+...+....... +.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 2100 0 00111223333333333333 7899999996321
Q ss_pred HHHhhhccccCCCCCCCCCCCCCCCCCeEEEEEecCCCCCCCccccCCCCcceEEEeCC-CCHHHHHHHHHHhhcCcccC
Q 045279 250 TCMDESHRLVQPGDQKSKSDASDSKPGYVLVIGATNRPDAVDPALRRPGRFDREIVLGV-PDENARVQILSVLTRNLRVE 328 (702)
Q Consensus 250 ~~ld~~~~~~~~~~~~~~~~~~~~~~~~v~vI~atn~~~~ld~al~r~~Rf~~~i~~~~-p~~~er~~Il~~~~~~~~~~ 328 (702)
.+..+ .++ ..||.||....-..... .....+.++. .+.++-.++|..........
T Consensus 250 -~~~~~------------------~~~-~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~ 305 (1249)
T 3sfz_A 250 -VLKAF------------------DNQ-CQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKED 305 (1249)
T ss_dssp -HHTTT------------------CSS-CEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTT
T ss_pred -HHHhh------------------cCC-CEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhh
Confidence 11111 122 46777776543221111 1124467775 88899999998766433322
Q ss_pred CcccHHHHHhhCCCCCH
Q 045279 329 GSFDLVKIARSTPGFVG 345 (702)
Q Consensus 329 ~~~~~~~la~~t~g~~~ 345 (702)
.......+++.+.|...
T Consensus 306 ~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 306 LPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp CCTHHHHHHHHTTTCHH
T ss_pred CcHHHHHHHHHhCCCHH
Confidence 23346678888888654
No 235
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.44 E-value=0.00039 Score=68.14 Aligned_cols=29 Identities=38% Similarity=0.545 Sum_probs=26.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
|++++.-+.|+||+|+|||||++.|+..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67788889999999999999999999854
No 236
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.42 E-value=0.00013 Score=76.61 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+..+.-+.|.||+|+|||||+++++...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3445557899999999999999999754
No 237
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.41 E-value=0.00022 Score=72.17 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+||||++++++...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 344557899999999999999999754
No 238
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.40 E-value=0.00059 Score=71.56 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc----ccc-----------ccHHHHHHHHH-HHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG----VSG-----------ASEENIRDLFS-KAY 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~----~~g-----------~~~~~~~~~f~-~a~ 214 (702)
|++++.-++|+||||+|||+|+..++... +..+++++...-... ..| .....+..+.. .+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 67788889999999999999999987654 556666665432111 001 01122222222 222
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 45689999999998874
No 239
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.38 E-value=9.7e-05 Score=69.98 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=28.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
+..|+|+|||||||||+++.||+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999887643
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.37 E-value=0.00027 Score=66.31 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=29.8
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
.-++|.|+||+||||+++.|+..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4589999999999999999999999888876543
No 241
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.34 E-value=0.00025 Score=74.57 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 444557899999999999999999855
No 242
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.33 E-value=0.0014 Score=72.38 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=52.8
Q ss_pred CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC--ccCccccCCCccceEEEcCCCCHH
Q 045279 523 PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD--VMDRAVLRPGRFGKLLYVPLPTPD 600 (702)
Q Consensus 523 ~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~--~ld~a~~r~gRf~~~i~~~~p~~~ 600 (702)
+-+|+|||++.+...-+ ......+..+. ......++.+|++|.+|. .++..+.. -|...|.+...+..
T Consensus 344 ~ivvVIDE~~~L~~~~~----~~~~~~L~~Ia----r~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~ 413 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG----KKVEELIARIA----QKARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEEESCCTTHHHHTC----HHHHHHHHHHH----HHCTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHH
T ss_pred cEEEEEeCHHHHhhhhh----HHHHHHHHHHH----HHHhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHH
Confidence 35899999998874321 11223333333 334567889999999987 78877766 68889999999988
Q ss_pred HHHHHHH
Q 045279 601 ERGLILE 607 (702)
Q Consensus 601 ~r~~il~ 607 (702)
+...|+.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8777774
No 243
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.32 E-value=0.00055 Score=69.75 Aligned_cols=113 Identities=12% Similarity=0.118 Sum_probs=64.0
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh-----CCeEEEEeccccccc-------------Cc---CchHHHHHHHHHH
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA-----GANFIHIKGPELLNK-------------YV---GESELAVRTLFSR 517 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~~~~i~~~~l~~~-------------~~---g~~~~~~~~~f~~ 517 (702)
|++++ -++++||||+|||+++-.++... +..++.++..+-... ++ ...+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56666 57899999999999988666543 567777776543221 00 1122220122222
Q ss_pred ---HHhCCCeEEEEeCcchhhcccC--CCCc------hHHHHHHHHHHHhhhCCCCCCcEEEEEec
Q 045279 518 ---ARTCSPCILFFDEVDALTTKRG--KEGG------WVVERLLNQLLIELDGADKRKGVFVIGAT 572 (702)
Q Consensus 518 ---a~~~~~~vl~iDEid~l~~~r~--~~~~------~~~~~~~~~ll~~l~~~~~~~~~~vI~at 572 (702)
++...|.+|+||=+..+.+... ...+ ....+.+++.|..|.......++.||++.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tN 169 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAIN 169 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 2456799999999999974321 1101 02345666666665544444555555443
No 244
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.32 E-value=0.00032 Score=74.87 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=63.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEeccccccc--------CcCc---------------
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLNK--------YVGE--------------- 506 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~--------~~g~--------------- 506 (702)
|+.++.-++|+||||+|||++++.++-.. +...+.++..+.... .+|.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56677778999999999999999776432 234677765542110 0110
Q ss_pred -hH---HHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCc--hHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 507 -SE---LAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 507 -~~---~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~--~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
.+ ..+..+...+....|.+|+||++-.+....-.+.+ ....+.+..++..|.......++.||++++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 01 11222333344567999999998887643211111 1112333444444444433445667777765
No 245
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.32 E-value=0.00024 Score=74.50 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 444557899999999999999999854
No 246
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.32 E-value=0.00075 Score=67.48 Aligned_cols=40 Identities=25% Similarity=0.274 Sum_probs=33.7
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
...+..++|+|+||+||||+++.|++.++..++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3455779999999999999999999999876777777665
No 247
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.31 E-value=0.00051 Score=72.82 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=48.9
Q ss_pred HHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecc-ccc-cc---CcCc-----hHHHHHHHHHHHHh
Q 045279 455 YEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGP-ELL-NK---YVGE-----SELAVRTLFSRART 520 (702)
Q Consensus 455 ~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~-~l~-~~---~~g~-----~~~~~~~~f~~a~~ 520 (702)
+.++...++..++++||+|+||||++++++..+ ...++.+... ++. .. |+.+ ....++..+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 334445566678999999999999999999865 2344333321 110 00 1111 11233556677777
Q ss_pred CCCeEEEEeCcc
Q 045279 521 CSPCILFFDEVD 532 (702)
Q Consensus 521 ~~~~vl~iDEid 532 (702)
..|.+|++||+-
T Consensus 208 ~~pd~illdE~~ 219 (372)
T 2ewv_A 208 EDPDVIFVGEMR 219 (372)
T ss_dssp SCCSEEEESCCC
T ss_pred hCcCEEEECCCC
Confidence 799999999984
No 248
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.31 E-value=0.00049 Score=68.86 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|.||+|+|||||+++++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455557899999999999999999854
No 249
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.31 E-value=0.0013 Score=69.03 Aligned_cols=78 Identities=19% Similarity=0.313 Sum_probs=51.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-----c----------ccccHHHHHHHHHHH-H
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG-----V----------SGASEENIRDLFSKA-Y 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~-----~----------~g~~~~~~~~~f~~a-~ 214 (702)
|++++..++|+||||+|||+||..++... +.++++++...-... + .......+..++... .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 57788889999999999999999987654 567777776321110 0 001122333333332 2
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 45788999999988874
No 250
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.30 E-value=0.00023 Score=74.55 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344557899999999999999999855
No 251
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.30 E-value=0.00026 Score=71.30 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+||||++++++...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 445557899999999999999999754
No 252
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.30 E-value=0.00062 Score=71.75 Aligned_cols=78 Identities=27% Similarity=0.359 Sum_probs=51.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhccc----cc-----------ccHHHHHHHHHHHH-
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSGV----SG-----------ASEENIRDLFSKAY- 214 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~~----~g-----------~~~~~~~~~f~~a~- 214 (702)
|++++.-++|+||||+|||+||..++... +.++++++...-.... .| .....+...+....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 67788889999999999999999887654 5677777665321110 00 11122233333322
Q ss_pred hhCCceEEechhhHhhh
Q 045279 215 RTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 215 ~~~p~il~iDEid~l~~ 231 (702)
...+.+|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 35688999999998874
No 253
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.28 E-value=0.00061 Score=71.46 Aligned_cols=40 Identities=28% Similarity=0.390 Sum_probs=32.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---------GVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---------~~~~~~i~~~~ 193 (702)
|++++.-++|+||||+|||+|+..+|... +..+++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 67888899999999999999999998862 45666776654
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.28 E-value=0.0009 Score=69.57 Aligned_cols=40 Identities=23% Similarity=0.336 Sum_probs=32.9
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---------GVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---------~~~~~~i~~~~ 193 (702)
|++++.-++|+||||+|||+++..++... +..+++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 67788899999999999999999998764 45667776654
No 255
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.27 E-value=0.0002 Score=68.19 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=28.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
..+..|+|+|+||+||||+++.|++.++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 445679999999999999999999999877654
No 256
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.26 E-value=0.00059 Score=68.95 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|.||+|+|||||+++|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455568899999999999999999754
No 257
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.25 E-value=0.00017 Score=68.61 Aligned_cols=41 Identities=34% Similarity=0.486 Sum_probs=33.5
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.+.++..++|+||||+||||+++.|++.++...+.++..++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35567789999999999999999999987777777776554
No 258
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.25 E-value=0.00044 Score=65.82 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.+.|+||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 46899999999999999999876
No 259
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.25 E-value=0.00068 Score=66.11 Aligned_cols=70 Identities=16% Similarity=0.143 Sum_probs=43.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccc-------ccccCcCch-----HHHHHHHHHHHHh----CCCeE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPE-------LLNKYVGES-----ELAVRTLFSRART----CSPCI 525 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~-------l~~~~~g~~-----~~~~~~~f~~a~~----~~~~v 525 (702)
-++++||+|+|||+++..++..+ +..++.++... +.+. .|.. ......+++.+.. ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 35778999999999988887765 55555553221 1121 1210 0112345555554 35889
Q ss_pred EEEeCcchhh
Q 045279 526 LFFDEVDALT 535 (702)
Q Consensus 526 l~iDEid~l~ 535 (702)
|+|||+..+.
T Consensus 93 ViIDEaQ~l~ 102 (223)
T 2b8t_A 93 IGIDEVQFFD 102 (223)
T ss_dssp EEECSGGGSC
T ss_pred EEEecCccCc
Confidence 9999999865
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.24 E-value=0.00018 Score=72.35 Aligned_cols=72 Identities=22% Similarity=0.382 Sum_probs=45.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechhh---hcc--------cccccHHHHHHHHHHHHhhCCce
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETGV---PFYKISATEV---VSG--------VSGASEENIRDLFSKAYRTAPSI 220 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~i~~~~l---~~~--------~~g~~~~~~~~~f~~a~~~~p~i 220 (702)
+.++..++|+||+|+||||+++++++.+.. --+.+....+ ... ..|.....++..+..+....|.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 456678999999999999999999887631 1122222111 000 01111123456667777789999
Q ss_pred EEechh
Q 045279 221 VFIDEI 226 (702)
Q Consensus 221 l~iDEi 226 (702)
|++||+
T Consensus 102 lllDEp 107 (261)
T 2eyu_A 102 IFVGEM 107 (261)
T ss_dssp EEESCC
T ss_pred EEeCCC
Confidence 999998
No 261
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.21 E-value=0.00032 Score=74.13 Aligned_cols=27 Identities=33% Similarity=0.566 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+|||||||.+++|...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 344457899999999999999999865
No 262
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.20 E-value=0.00026 Score=74.70 Aligned_cols=27 Identities=33% Similarity=0.559 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 444557899999999999999999854
No 263
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.20 E-value=0.00068 Score=68.82 Aligned_cols=29 Identities=28% Similarity=0.324 Sum_probs=23.7
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
|+..+.-++|+||||+|||+++..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34555668999999999999999998643
No 264
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00058 Score=69.68 Aligned_cols=41 Identities=34% Similarity=0.384 Sum_probs=33.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
..+..++|.||||+||||+++.|+..++..++.+++..+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 34567999999999999999999999865677787755543
No 265
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.18 E-value=0.00023 Score=67.12 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=28.9
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
..+..|+|+|+||+||||+++.|++.++..++..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 3456799999999999999999999998776543
No 266
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.17 E-value=0.002 Score=70.64 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=50.9
Q ss_pred eEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCC--ccCccccCCCccceEEEcCCCCHHH
Q 045279 524 CILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPD--VMDRAVLRPGRFGKLLYVPLPTPDE 601 (702)
Q Consensus 524 ~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~--~ld~a~~r~gRf~~~i~~~~p~~~~ 601 (702)
-+|+|||+..+.... ..-+..++..+-.......+.+|++|.++. .++..+.. -|...|.|...+..+
T Consensus 299 ivlvIDE~~~ll~~~--------~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 299 IVVLVDEFADLMMTV--------GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEEETHHHHHHHH--------HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHH
T ss_pred EEEEEeCHHHHHhhh--------hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHH
Confidence 389999998776311 112223333332223445788889999987 67777766 788899999999988
Q ss_pred HHHHHHH
Q 045279 602 RGLILEA 608 (702)
Q Consensus 602 r~~il~~ 608 (702)
...|+..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 8877753
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.17 E-value=0.00025 Score=66.09 Aligned_cols=31 Identities=35% Similarity=0.462 Sum_probs=27.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKIS 190 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~ 190 (702)
.|+|.||||+||||+++.|++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998876544
No 268
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.17 E-value=0.00044 Score=68.35 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|.||+|+||||++++++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455568899999999999999999744
No 269
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.17 E-value=0.0016 Score=69.97 Aligned_cols=73 Identities=15% Similarity=0.066 Sum_probs=49.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc-------------------ccCcC-chHHHHHHHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL-------------------NKYVG-ESELAVRTLFSRA 518 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~-------------------~~~~g-~~~~~~~~~f~~a 518 (702)
+|.-++++|++|+||||++..||..+ +..+..+.+..+. ..+.+ .....++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765 5566555543221 11112 2333456677777
Q ss_pred HhCCCeEEEEeCcchh
Q 045279 519 RTCSPCILFFDEVDAL 534 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l 534 (702)
....+.+++||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7777899999987544
No 270
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.17 E-value=0.00034 Score=73.09 Aligned_cols=27 Identities=33% Similarity=0.568 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 444557899999999999999999754
No 271
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.17 E-value=0.0027 Score=71.09 Aligned_cols=44 Identities=16% Similarity=0.029 Sum_probs=35.2
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHH
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~ 180 (702)
+|.+..+++|.+.+... +-.....|.|+|+.|+||||||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 49999999999877321 112346799999999999999999997
No 272
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.16 E-value=0.00021 Score=67.71 Aligned_cols=33 Identities=39% Similarity=0.591 Sum_probs=27.5
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHH-hCCCeEE
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANE-TGVPFYK 188 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~-l~~~~~~ 188 (702)
..+..|+|+|+|||||||+++.|++. ++.+++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34567999999999999999999999 6755543
No 273
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.16 E-value=0.00022 Score=68.53 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=29.1
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+...++|+||||+||||+++.||..++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4456789999999999999999999999887654
No 274
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.14 E-value=0.0031 Score=61.13 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=26.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
..++++.|+|||||||++-.+|..+ |..+..++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4579999999999999998888775 556554444
No 275
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.14 E-value=0.00025 Score=65.98 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=27.6
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.+|+|.|+|||||||+++.||+.++.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 569999999999999999999999988864
No 276
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.13 E-value=0.0018 Score=64.05 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=29.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
|++++..++|+||||+|||+++..++... +..+++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67788899999999999999988776543 445555544
No 277
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.13 E-value=0.00022 Score=66.87 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.++|+|||||||||+++.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999877653
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.13 E-value=0.0002 Score=70.98 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.+ .-+.|.||+|+||||++++++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 345 667899999999999999999865
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.13 E-value=0.0014 Score=67.19 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=46.2
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhcc-------------------cccccH-HHHHHHHH
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVSG-------------------VSGASE-ENIRDLFS 211 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~~-------------------~~g~~~-~~~~~~f~ 211 (702)
..++.-++|+||+|+||||++..||..+ +..+..+++...... ..+... ......+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3566789999999999999999998876 445555543221100 011111 12233455
Q ss_pred HHHhhCCceEEechhh
Q 045279 212 KAYRTAPSIVFIDEID 227 (702)
Q Consensus 212 ~a~~~~p~il~iDEid 227 (702)
.+....+.+++||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566788899999873
No 280
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.13 E-value=0.00028 Score=65.91 Aligned_cols=29 Identities=34% Similarity=0.750 Sum_probs=25.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
..++|+|||||||||+++.|+..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45999999999999999999999986543
No 281
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.0017 Score=64.10 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=27.9
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
|+.++.-++++||||+|||+++..++... +.+++.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56667778999999999999988776543 445555443
No 282
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.10 E-value=0.0025 Score=69.64 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.+++.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998866
No 283
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.10 E-value=0.0008 Score=70.64 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=32.9
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEechh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANETG---------VPFYKISATE 193 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l~---------~~~~~i~~~~ 193 (702)
.|++++.-+.|+||||+|||||++.++.... ..+++++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3678888999999999999999999998762 3456666543
No 284
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.09 E-value=0.00061 Score=74.55 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=35.1
Q ss_pred CCCccccc-CHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 120 GPRFQDLG-GMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 120 ~~~~~~i~-G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+|+++- ++..++..+...+.. ...+++|.|+||||||+++.+++..+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~--------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKE--------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHS--------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhc--------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34788875 566666665544411 12379999999999999999998776
No 285
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.09 E-value=0.00035 Score=66.07 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=28.6
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..++|+||||+||||+++.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45789999999999999999999999887654
No 286
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.08 E-value=0.00029 Score=66.58 Aligned_cols=29 Identities=31% Similarity=0.595 Sum_probs=26.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|+|+|||||||+++.|++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 49999999999999999999999988754
No 287
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.08 E-value=0.0012 Score=66.33 Aligned_cols=39 Identities=21% Similarity=0.400 Sum_probs=31.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHH---hCCCeEEEechhhhc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANE---TGVPFYKISATEVVS 196 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~---l~~~~~~i~~~~l~~ 196 (702)
+..|+|+|+||+||||+++.|+.. .+.+++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 356999999999999999999998 677777666665543
No 288
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.07 E-value=0.00023 Score=79.90 Aligned_cols=98 Identities=26% Similarity=0.347 Sum_probs=54.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccccC----cCchHHHHHHHHHHH---------HhCCCeEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLNKY----VGESELAVRTLFSRA---------RTCSPCIL 526 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~----~g~~~~~~~~~f~~a---------~~~~~~vl 526 (702)
...+++.||||||||+++..++..+ +..++.+..+.-.... .+.....+..++... ......+|
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvl 283 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLL 283 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEE
Confidence 3568899999999999999998754 5555544322111000 000000111111100 11245799
Q ss_pred EEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCC
Q 045279 527 FFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNR 574 (702)
Q Consensus 527 ~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~ 574 (702)
+|||+..+. ...+..|+..+. ...++++++=.+.
T Consensus 284 IIDEasml~-----------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 284 IVDEVSMMG-----------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp EECCGGGCC-----------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EEcCccCCC-----------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 999999887 566677765543 3455666655443
No 289
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.07 E-value=0.00015 Score=76.19 Aligned_cols=70 Identities=23% Similarity=0.375 Sum_probs=44.9
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec-hhhh---------cccccccHHHHHHHHHHHHhhCCceEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISA-TEVV---------SGVSGASEENIRDLFSKAYRTAPSIVF 222 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~-~~l~---------~~~~g~~~~~~~~~f~~a~~~~p~il~ 222 (702)
++..++++||+|+||||+++++++.++ ..++.+.- .++. ....+.....+...+..+....|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 445799999999999999999988763 22222211 0110 001111112345577788888999999
Q ss_pred echh
Q 045279 223 IDEI 226 (702)
Q Consensus 223 iDEi 226 (702)
+||+
T Consensus 202 lDEp 205 (356)
T 3jvv_A 202 VGEM 205 (356)
T ss_dssp ESCC
T ss_pred cCCC
Confidence 9999
No 290
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.07 E-value=0.00024 Score=73.76 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=38.8
Q ss_pred cCHHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Q 045279 127 GGMESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKIS 190 (702)
Q Consensus 127 ~G~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~ 190 (702)
+..+.+.+.+...+...+.. ....+++|+||||+||||++++||+.++.+|+.++
T Consensus 2 ~~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~ 56 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFL 56 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeec
Confidence 45566666666665432221 12246999999999999999999999987775543
No 291
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.06 E-value=0.00064 Score=68.28 Aligned_cols=28 Identities=18% Similarity=0.344 Sum_probs=23.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+..+.-+.|.||+|+|||||+++++...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3445557899999999999999999865
No 292
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.06 E-value=0.00074 Score=69.27 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|+||+|+|||||+++++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4556668999999999999999999754
No 293
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.04 E-value=0.0003 Score=66.67 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=22.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
.-++++||+|+||||++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 458899999999999986665543 4444443
No 294
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.03 E-value=0.00075 Score=66.12 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+|||||+++++...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344557899999999999999999754
No 295
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.03 E-value=0.00027 Score=74.13 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.7
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+.-+.|.||+||||||+.+++|...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 444557899999999999999999854
No 296
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.02 E-value=0.0014 Score=67.17 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=25.9
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.++.-++|.||||+|||++++.+|..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 466777778999999999999999998865
No 297
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.02 E-value=0.00042 Score=66.56 Aligned_cols=33 Identities=36% Similarity=0.648 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.+..|+|+|+||+||||+++.|++.++.+++.+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999998876543
No 298
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.02 E-value=0.0012 Score=67.34 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=48.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeEEEechhhhcc-------------c--ccccHHHH-HHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET-----GVPFYKISATEVVSG-------------V--SGASEENI-RDLFSK 212 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l-----~~~~~~i~~~~l~~~-------------~--~g~~~~~~-~~~f~~ 212 (702)
|++++ -++++||||+|||+|+..++... +..+++++...-... + .......+ ..+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 56776 69999999999999977665433 556777776532110 0 01111222 222222
Q ss_pred H---HhhCCceEEechhhHhhh
Q 045279 213 A---YRTAPSIVFIDEIDAIAS 231 (702)
Q Consensus 213 a---~~~~p~il~iDEid~l~~ 231 (702)
. ....|.+++||-|..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2 345789999999998874
No 299
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.02 E-value=0.0025 Score=63.98 Aligned_cols=25 Identities=28% Similarity=0.561 Sum_probs=21.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.-+.|.||+|+||||++++++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5557899999999999999999764
No 300
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.01 E-value=0.00068 Score=70.60 Aligned_cols=73 Identities=15% Similarity=0.232 Sum_probs=50.3
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhC--CeEEEEecccccc-----c---CcCchHHHHHHHHHHHHhCCCeEEEEeC
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAG--ANFIHIKGPELLN-----K---YVGESELAVRTLFSRARTCSPCILFFDE 530 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~--~~~~~i~~~~l~~-----~---~~g~~~~~~~~~f~~a~~~~~~vl~iDE 530 (702)
.++..++++||+|+||||++++++.... ...+.+....... . ++.......+..+..|....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 3456789999999999999999998763 2345555432111 1 2211234556788888888999999999
Q ss_pred cch
Q 045279 531 VDA 533 (702)
Q Consensus 531 id~ 533 (702)
.-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 764
No 301
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.99 E-value=0.00044 Score=69.21 Aligned_cols=33 Identities=42% Similarity=0.628 Sum_probs=29.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
.++|+|||||||||+|+.||+.++..++..+.-
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 489999999999999999999999888766553
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.99 E-value=0.00049 Score=65.40 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=28.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
..+.-++|.|+||+||||+++.++..++.+++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 445678999999999999999999999887665
No 303
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.99 E-value=0.0028 Score=62.56 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=23.6
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++.-+.|+||+|+||||++++++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455668899999999999999999854
No 304
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.98 E-value=0.0018 Score=69.08 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---------CCCeEEEechh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---------GVPFYKISATE 193 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---------~~~~~~i~~~~ 193 (702)
|+.++.-++|+||||+|||||++.++-.. +...++++...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 67788899999999999999999776332 23366666543
No 305
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.98 E-value=0.0011 Score=68.14 Aligned_cols=37 Identities=30% Similarity=0.506 Sum_probs=31.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
..++|+||+|||||++++.||+.++..++.++.-.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy 42 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIY 42 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTB
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhh
Confidence 4699999999999999999999999888777655443
No 306
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.98 E-value=0.0016 Score=64.75 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+||||++++++...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445557899999999999999999754
No 307
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.98 E-value=0.0016 Score=65.16 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++.-+.|.||+|+||||++++++...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44457899999999999999999754
No 308
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.98 E-value=0.0059 Score=60.28 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=29.7
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH----hCCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE----TGVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~----l~~~~~~i~~ 191 (702)
|++++.-++|+|+||+|||+||..+|.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 6788889999999999999999876533 3566666554
No 309
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.97 E-value=0.0014 Score=66.05 Aligned_cols=119 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeE--------EE--------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANF--------IH-------------------------- 493 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~--------~~-------------------------- 493 (702)
+.+.++.-+.|.||+|+||||++++++... +.++ +.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~ 107 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF 107 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc
Q ss_pred ----------------Eecc--cccccCcCc--hHHHHHHHHHHHHhCCCeEEEEeC-cchhhcccCCCCchHHHHHHHH
Q 045279 494 ----------------IKGP--ELLNKYVGE--SELAVRTLFSRARTCSPCILFFDE-VDALTTKRGKEGGWVVERLLNQ 552 (702)
Q Consensus 494 ----------------i~~~--~l~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ 552 (702)
+... ++..++++. ..+.-|-.+.+|....|.+|++|| .-.|. ......
T Consensus 108 ~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD-----------~~~~~~ 176 (266)
T 2yz2_A 108 YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLD-----------REGKTD 176 (266)
T ss_dssp CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCC-----------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCC-----------HHHHHH
Q ss_pred HHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 553 LLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 553 ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
++..+...... +..||++|++++.+.. -+|+++.+
T Consensus 177 l~~~l~~l~~~-g~tii~vtHd~~~~~~------~~d~v~~l 211 (266)
T 2yz2_A 177 LLRIVEKWKTL-GKTVILISHDIETVIN------HVDRVVVL 211 (266)
T ss_dssp HHHHHHHHHHT-TCEEEEECSCCTTTGG------GCSEEEEE
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHHHHHH------hCCEEEEE
No 310
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.97 E-value=0.00044 Score=65.37 Aligned_cols=30 Identities=33% Similarity=0.594 Sum_probs=26.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
+..|+|+|+|||||||+++.|++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356999999999999999999999986553
No 311
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.97 E-value=0.0013 Score=66.93 Aligned_cols=39 Identities=38% Similarity=0.574 Sum_probs=31.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
..+.-++|.||||+||||+++.++..++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 345668999999999999999999988555667776444
No 312
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.97 E-value=0.0074 Score=68.11 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=32.0
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHH
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~ 485 (702)
..++|-+.....+.+.+.. .....+-++++||+|+|||++|+.++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~-----------~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSK-----------LKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTT-----------STTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhc-----------ccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4567777777766654321 012345688999999999999998864
No 313
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.96 E-value=0.00077 Score=70.01 Aligned_cols=114 Identities=14% Similarity=0.150 Sum_probs=63.6
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---------------C----CeEEEEeccccc--c-------c--------
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---------------G----ANFIHIKGPELL--N-------K-------- 502 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------------~----~~~~~i~~~~l~--~-------~-------- 502 (702)
|++++.-++++||||+|||++|..+|... + .+++.++...-+ . .
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 56666778999999999999999988752 2 466677655421 0 0
Q ss_pred ----Cc---CchHH---HHHHHHHHHHh-CCCeEEEEeCcchhhcccCCC-Cc-hHHHHHHHHHHHhhhCCCCCCcEEEE
Q 045279 503 ----YV---GESEL---AVRTLFSRART-CSPCILFFDEVDALTTKRGKE-GG-WVVERLLNQLLIELDGADKRKGVFVI 569 (702)
Q Consensus 503 ----~~---g~~~~---~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~-~~-~~~~~~~~~ll~~l~~~~~~~~~~vI 569 (702)
++ ...+. .+..+...+.. ..+.+|+||.+..+......+ +. ......+.+++..|.......++.||
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 00 01111 12223333444 568899999999887432111 11 11122445555555444334455566
Q ss_pred Eec
Q 045279 570 GAT 572 (702)
Q Consensus 570 ~at 572 (702)
++.
T Consensus 254 ~~n 256 (322)
T 2i1q_A 254 VTN 256 (322)
T ss_dssp EEE
T ss_pred EEC
Confidence 554
No 314
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.96 E-value=0.00041 Score=66.10 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=27.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|.|+|||||||+++.|++.++.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4569999999999999999999999877644
No 315
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.95 E-value=0.00071 Score=63.21 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.7
Q ss_pred CCCCCceEEEECCCCCCHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHA 177 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~ 177 (702)
.+.++.-+.|+||+|+|||||+++
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHH
Confidence 345677899999999999999994
No 316
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.95 E-value=0.00057 Score=66.68 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=27.1
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|+|+||+||||+++.||+.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4579999999999999999999999876543
No 317
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.95 E-value=0.00076 Score=63.41 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=32.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
++..+.|+|++|+||||+++.|+..+ +.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 45679999999999999999999988 888888775544
No 318
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.94 E-value=0.00029 Score=74.76 Aligned_cols=77 Identities=23% Similarity=0.379 Sum_probs=47.6
Q ss_pred ccccCCCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEech-hh-hcc---cccc-----cHHHHHHHHHHHHh
Q 045279 150 PQWLGVRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISAT-EV-VSG---VSGA-----SEENIRDLFSKAYR 215 (702)
Q Consensus 150 ~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~-~l-~~~---~~g~-----~~~~~~~~f~~a~~ 215 (702)
+..+.+.++..++|+||+|+||||++++|++.+. ..++.+... .+ ... +..+ ....+...+..+..
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 207 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence 3344456777899999999999999999988763 223222210 00 000 0111 11123455666667
Q ss_pred hCCceEEechh
Q 045279 216 TAPSIVFIDEI 226 (702)
Q Consensus 216 ~~p~il~iDEi 226 (702)
..|.+|++||+
T Consensus 208 ~~pd~illdE~ 218 (372)
T 2ewv_A 208 EDPDVIFVGEM 218 (372)
T ss_dssp SCCSEEEESCC
T ss_pred hCcCEEEECCC
Confidence 78999999999
No 319
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.93 E-value=0.0098 Score=57.60 Aligned_cols=33 Identities=24% Similarity=0.264 Sum_probs=25.8
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
..+++.|+||||||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999999999999998888765 656554443
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.93 E-value=0.00045 Score=65.66 Aligned_cols=35 Identities=29% Similarity=0.453 Sum_probs=28.6
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..|+|+|+|||||||+++.|++.++.++ ++..++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~--i~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeE--EeHHHH
Confidence 35699999999999999999999998765 444444
No 321
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.92 E-value=0.0013 Score=65.63 Aligned_cols=39 Identities=31% Similarity=0.440 Sum_probs=32.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
..+..++|.||||+||||+++.|+..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345678999999999999999999999866677776655
No 322
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.92 E-value=0.0041 Score=66.81 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhhhhccCCCcccccCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhhhc---------
Q 045279 129 MESVLEELKMEVIVPLYHPQLPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEVVS--------- 196 (702)
Q Consensus 129 ~~~~k~~l~~~v~~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l~~--------- 196 (702)
.+.+++.+.+.+...+..+...... -.++.-++++|++|+||||++..||..+ +..+..+++.....
T Consensus 72 ~~~v~~~l~~eL~~~L~~~~~~~~~-~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~ 150 (443)
T 3dm5_A 72 KEHIIKIVYEELTKFLGTEAKPIEI-KEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQL 150 (443)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCCC-CSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccccc-CCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHH
Confidence 3445555555554433321111111 1246789999999999999999998766 55666555432211
Q ss_pred ----------ccccc-cHHHHHHHHHHHHhhCCceEEechh
Q 045279 197 ----------GVSGA-SEENIRDLFSKAYRTAPSIVFIDEI 226 (702)
Q Consensus 197 ----------~~~g~-~~~~~~~~f~~a~~~~p~il~iDEi 226 (702)
...+. ....+...+..+....+.+++||..
T Consensus 151 ~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTa 191 (443)
T 3dm5_A 151 LDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTA 191 (443)
T ss_dssp HGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 01111 2223456667776666889999977
No 323
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.91 E-value=0.00064 Score=65.33 Aligned_cols=31 Identities=35% Similarity=0.664 Sum_probs=27.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|+|+||+||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3569999999999999999999999876643
No 324
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.91 E-value=0.00064 Score=63.36 Aligned_cols=30 Identities=30% Similarity=0.617 Sum_probs=26.2
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
+..+.|+||||+||||+++.+|..++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999987654
No 325
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.91 E-value=0.00045 Score=64.38 Aligned_cols=29 Identities=31% Similarity=0.650 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|+|+|||||||+++.|++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 49999999999999999999999877653
No 326
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.91 E-value=0.00068 Score=63.40 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=28.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
++..++|+||||+||||+++.|++.++..+ ++...+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 346799999999999999999999987554 454443
No 327
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.90 E-value=0.00048 Score=64.09 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=24.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|+||||+||||+++.| ..++.+++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 5899999999999999999 888877654
No 328
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.90 E-value=0.00086 Score=65.42 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=43.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechh-------hhccccccc-----HHHHHHHHHHHHh----hCC
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATE-------VVSGVSGAS-----EENIRDLFSKAYR----TAP 218 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~-------l~~~~~g~~-----~~~~~~~f~~a~~----~~p 218 (702)
+.-++++||+|+||||++..++.++ +..++.+++.. +.+. .|-. ......+++.+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4568889999999999988887765 45555553222 1111 1110 0111345555543 347
Q ss_pred ceEEechhhHhh
Q 045279 219 SIVFIDEIDAIA 230 (702)
Q Consensus 219 ~il~iDEid~l~ 230 (702)
.+|+|||+..+.
T Consensus 91 dvViIDEaQ~l~ 102 (223)
T 2b8t_A 91 KVIGIDEVQFFD 102 (223)
T ss_dssp CEEEECSGGGSC
T ss_pred CEEEEecCccCc
Confidence 899999997754
No 329
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.90 E-value=0.00056 Score=64.75 Aligned_cols=33 Identities=33% Similarity=0.591 Sum_probs=27.7
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHH-hCCeEEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANE-AGANFIHI 494 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~-~~~~~~~i 494 (702)
.+..++|+|+|||||||+++.++.. ++.+++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3456899999999999999999999 67766543
No 330
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.89 E-value=0.0022 Score=68.92 Aligned_cols=73 Identities=18% Similarity=0.072 Sum_probs=45.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccccc--------------c--cC---cC-chHHHHHHHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELL--------------N--KY---VG-ESELAVRTLFSRA 518 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~--------------~--~~---~g-~~~~~~~~~f~~a 518 (702)
++.-++++||+|+||||++..||..+ +..+..+.+..+. + .| .+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 35568899999999999999998765 5555555433111 0 01 11 1122233445555
Q ss_pred HhCCCeEEEEeCcchh
Q 045279 519 RTCSPCILFFDEVDAL 534 (702)
Q Consensus 519 ~~~~~~vl~iDEid~l 534 (702)
....+.+++||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999987543
No 331
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.89 E-value=0.002 Score=68.41 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=23.2
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+..+.-+.|.||+||||||++++|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3455668899999999999999999743
No 332
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.89 E-value=0.00043 Score=67.93 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=27.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.+..|+|+|+|||||||+++.|++.++.+++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 34679999999999999999999999866543
No 333
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.88 E-value=0.00072 Score=64.90 Aligned_cols=37 Identities=35% Similarity=0.615 Sum_probs=29.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.++..++|+||+|+||||+++.|++.++.. .++...+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 346679999999999999999999999654 4555444
No 334
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.88 E-value=0.00096 Score=65.09 Aligned_cols=102 Identities=19% Similarity=0.299 Sum_probs=0.0
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHhCC-eE--------------------------------EE----Eeccccccc
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEAGA-NF--------------------------------IH----IKGPELLNK 502 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-~~--------------------------------~~----i~~~~l~~~ 502 (702)
.+.+.-+.|.||+|+|||||+++++..... ++ .. +.-..+...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN 92 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc
Q ss_pred CcCchHHHHHHHHHHHHhCCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccc
Q 045279 503 YVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAV 582 (702)
Q Consensus 503 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~ 582 (702)
+.|.....+..+++. +.++++| +| .....++...+. ..+.||.+|+.++.+...+
T Consensus 93 ~yg~~~~~v~~~l~~-----G~illLD-LD--------------~~~~~~i~~~l~-----~~~tI~i~th~~~~l~~Rl 147 (219)
T 1s96_A 93 YYGTSREAIEQVLAT-----GVDVFLD-ID--------------WQGAQQIRQKMP-----HARSIFILPPSKIELDRRL 147 (219)
T ss_dssp EEEEEHHHHHHHHTT-----TCEEEEE-CC--------------HHHHHHHHHHCT-----TCEEEEEECSSHHHHHHHH
T ss_pred cCCCCHHHHHHHHhc-----CCeEEEE-EC--------------HHHHHHHHHHcc-----CCEEEEEECCCHHHHHHHH
Q ss_pred cCCC
Q 045279 583 LRPG 586 (702)
Q Consensus 583 ~r~g 586 (702)
+..|
T Consensus 148 ~~rG 151 (219)
T 1s96_A 148 RGRG 151 (219)
T ss_dssp HTTS
T ss_pred HHcC
No 335
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.88 E-value=0.00069 Score=65.83 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhc
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVS 196 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~ 196 (702)
++.++-|+|.||||+||+|.|+.|++.++.+. ++..++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHH
Confidence 44556788999999999999999999997654 56666543
No 336
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.88 E-value=0.0045 Score=62.01 Aligned_cols=114 Identities=25% Similarity=0.261 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHhC-CeEEEEeccccccc----------------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEAG-ANFIHIKGPELLNK---------------------------------- 502 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~-~~~~~i~~~~l~~~---------------------------------- 502 (702)
+.+.++.-+.|+||+|+|||||+++++.... .--+.++..++...
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~ 120 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHHhccCCCC
Q ss_pred -------------------------------CcCc--hHHHHHHHHHHHHhCCCeEEEEeC----cchhhcccCCCCchH
Q 045279 503 -------------------------------YVGE--SELAVRTLFSRARTCSPCILFFDE----VDALTTKRGKEGGWV 545 (702)
Q Consensus 503 -------------------------------~~g~--~~~~~~~~f~~a~~~~~~vl~iDE----id~l~~~r~~~~~~~ 545 (702)
+... ..+..|-.+.+|....|.||++|| +|...
T Consensus 121 ~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~---------- 190 (260)
T 2ghi_A 121 TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT---------- 190 (260)
T ss_dssp CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHH----------
T ss_pred CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH----------
Q ss_pred HHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 546 VERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 546 ~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
...+..++..+ ..+..||++|+ |..... ++|+++.+
T Consensus 191 -~~~i~~~l~~l-----~~~~tviivtH-----~~~~~~--~~d~i~~l 226 (260)
T 2ghi_A 191 -EYLFQKAVEDL-----RKNRTLIIIAH-----RLSTIS--SAESIILL 226 (260)
T ss_dssp -HHHHHHHHHHH-----TTTSEEEEECS-----SGGGST--TCSEEEEE
T ss_pred -HHHHHHHHHHh-----cCCCEEEEEcC-----CHHHHH--hCCEEEEE
No 337
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.88 E-value=0.00094 Score=66.68 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.8
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|.||+|+||||++++++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344557899999999999999999865
No 338
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.88 E-value=0.00045 Score=65.60 Aligned_cols=40 Identities=38% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
+..+.-++|.||||+||||++++|+..++...+.++..++
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3455668999999999999999999987777777776543
No 339
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.87 E-value=0.00042 Score=67.55 Aligned_cols=30 Identities=30% Similarity=0.559 Sum_probs=26.7
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
..|+|.|+|||||||+++.|++.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 469999999999999999999999876654
No 340
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.87 E-value=0.00063 Score=63.25 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEe
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIK 495 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~ 495 (702)
-++|.||||+||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999999999998876544
No 341
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.87 E-value=0.0028 Score=65.00 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=53.9
Q ss_pred chhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccccc------------
Q 045279 437 LRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPELLN------------ 501 (702)
Q Consensus 437 ~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~------------ 501 (702)
+++.+.+.+...+.... -..+...++.-++++||+|+||||++..+|..+ +..+..+.+..+..
T Consensus 79 ~~~~~~~~l~~~l~~~~-~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 79 ALESLKEIILEILNFDT-KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHHHTCSCC-CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHH
Confidence 55555555555443221 001112345568899999999999999999865 44444444321110
Q ss_pred -------cCc-CchHHHHHHHHHHHHhCCCeEEEEeCcch
Q 045279 502 -------KYV-GESELAVRTLFSRARTCSPCILFFDEVDA 533 (702)
Q Consensus 502 -------~~~-g~~~~~~~~~f~~a~~~~~~vl~iDEid~ 533 (702)
... ++........+..+....|.+++||+.-.
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 001 11112223345556667889999998753
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.87 E-value=0.0007 Score=63.66 Aligned_cols=33 Identities=39% Similarity=0.749 Sum_probs=28.5
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+..++|+|+||+|||++++.++..++..++..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 356799999999999999999999998877644
No 343
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.87 E-value=0.00083 Score=66.55 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh--CCeEEEEeccccccc---------------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA--GANFIHIKGPELLNK--------------------------------- 502 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~--~~~~~~i~~~~l~~~--------------------------------- 502 (702)
+.+.++.-+.|.||+|+||||++++++... ..--+.++..++...
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGG
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhh
Q ss_pred -----------------------------CcCc--hHHHHHHHHHHHHhCCCeEEEEeC-cchhhcccCCCCchHHHHHH
Q 045279 503 -----------------------------YVGE--SELAVRTLFSRARTCSPCILFFDE-VDALTTKRGKEGGWVVERLL 550 (702)
Q Consensus 503 -----------------------------~~g~--~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~ 550 (702)
+++. ..+..|-.+.+|....|.+|++|| ...|. ....
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD-----------~~~~ 175 (240)
T 1ji0_A 107 YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA-----------PILV 175 (240)
T ss_dssp TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC-----------HHHH
T ss_pred hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC-----------HHHH
Q ss_pred HHHHHhhhCCCCCCcEEEEEecCCCCccCccccCCCccceEEEc
Q 045279 551 NQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 551 ~~ll~~l~~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
..++..+..... .+..||++|+.++.+.. -+|+++.+
T Consensus 176 ~~l~~~l~~~~~-~g~tvi~vtHd~~~~~~------~~d~v~~l 212 (240)
T 1ji0_A 176 SEVFEVIQKINQ-EGTTILLVEQNALGALK------VAHYGYVL 212 (240)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCHHHHHH------HCSEEEEE
T ss_pred HHHHHHHHHHHH-CCCEEEEEecCHHHHHH------hCCEEEEE
No 344
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.87 E-value=0.011 Score=72.85 Aligned_cols=166 Identities=15% Similarity=0.114 Sum_probs=89.2
Q ss_pred cccCCcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh-------CCeEEEEecccccc
Q 045279 429 EDVGGLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA-------GANFIHIKGPELLN 501 (702)
Q Consensus 429 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~-------~~~~~~i~~~~l~~ 501 (702)
..++|.+...+.|.+.+... ....+-+.++|++|+|||+||+.++... ...++.++.+....
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK 192 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH
T ss_pred ceeccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCc
Confidence 45778877777666644211 1233457899999999999999887642 12233444332100
Q ss_pred ---------------------cCcCchHHHHHHHHHHHHhC--CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhh
Q 045279 502 ---------------------KYVGESELAVRTLFSRARTC--SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD 558 (702)
Q Consensus 502 ---------------------~~~g~~~~~~~~~f~~a~~~--~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 558 (702)
.........+...+...... .+.+|+||+++... .+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------~~~ 252 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------VLK 252 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--------------------HHT
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--------------------HHH
Confidence 00111222233333333332 37899999988432 111
Q ss_pred CCCCCCcEEEEEecCCCCccCccccCCCccceEEEcCC-CCHHHHHHHHHHHhccCCCCCCCCHHHHhhhhcCCCC
Q 045279 559 GADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPL-PTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENL 633 (702)
Q Consensus 559 ~~~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~-p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~~~~~ 633 (702)
.+ ..+..||.||..+....... .....+.++. ++.++-.++|.................++ ..|.|.
T Consensus 253 ~~--~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~--~~~~gl 320 (1249)
T 3sfz_A 253 AF--DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSII--KECKGS 320 (1249)
T ss_dssp TT--CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHH--HHTTTC
T ss_pred hh--cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHH--HHhCCC
Confidence 12 22345666776554432211 2234677775 88888888888776443322233345555 345554
No 345
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.86 E-value=0.0005 Score=64.72 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=23.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
+..|+|+|+|||||||+++.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356999999999999999999999998876
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.86 E-value=0.00065 Score=62.98 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=26.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|+|+|+||+||||+++.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999987753
No 347
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.85 E-value=0.00059 Score=66.29 Aligned_cols=30 Identities=30% Similarity=0.618 Sum_probs=26.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.|+|+||||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998776543
No 348
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.84 E-value=0.0007 Score=63.39 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=26.4
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.||||+||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999999987764
No 349
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.83 E-value=0.001 Score=63.77 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=30.7
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~~l 194 (702)
.++..+.|+||+|+||||+++.|++.+ +...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456779999999999999999999988 444446665544
No 350
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.83 E-value=0.00069 Score=68.71 Aligned_cols=119 Identities=22% Similarity=0.292 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh--CCeEEEEeccccc---------ccCcCchHHHH---------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA--GANFIHIKGPELL---------NKYVGESELAV--------------- 511 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~--~~~~~~i~~~~l~---------~~~~g~~~~~~--------------- 511 (702)
+.+.++.-+.|.||+|+|||||+++++... ..--+.++..++. .+.+|...+..
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~ 121 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVI 121 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHH
Q ss_pred -----------------------------------------------HHHHHHHHhCCCeEEEEeC-cchhhcccCCCCc
Q 045279 512 -----------------------------------------------RTLFSRARTCSPCILFFDE-VDALTTKRGKEGG 543 (702)
Q Consensus 512 -----------------------------------------------~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~ 543 (702)
|..+.+|....|.+|++|| ...|.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD-------- 193 (279)
T 2ihy_A 122 SGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD-------- 193 (279)
T ss_dssp TTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCC--------
T ss_pred hhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccC--------
Q ss_pred hHHHHHHHHHHHhhhCCCCCCcEEE--EEecCCCCccCccccCCCccceEEEc
Q 045279 544 WVVERLLNQLLIELDGADKRKGVFV--IGATNRPDVMDRAVLRPGRFGKLLYV 594 (702)
Q Consensus 544 ~~~~~~~~~ll~~l~~~~~~~~~~v--I~atn~~~~ld~a~~r~gRf~~~i~~ 594 (702)
......++..+...... +..| |++|++.+.+.. -+|+++.+
T Consensus 194 ---~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~------~~d~v~~l 236 (279)
T 2ihy_A 194 ---FIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITA------NFSKILLL 236 (279)
T ss_dssp ---HHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCT------TCCEEEEE
T ss_pred ---HHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHH------hCCEEEEE
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.82 E-value=0.00067 Score=64.28 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=23.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
..|+|.|+||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999887
No 352
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.81 E-value=0.00068 Score=65.81 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=26.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.|+|.||||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 388999999999999999999998776543
No 353
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.81 E-value=0.00089 Score=65.98 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.2
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|.|+|||||||+++.||+.++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999876544
No 354
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.81 E-value=0.0055 Score=62.05 Aligned_cols=29 Identities=28% Similarity=0.289 Sum_probs=25.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
|+.++.-++|+||||+|||||+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56778889999999999999999998654
No 355
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.81 E-value=0.0006 Score=65.13 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=28.3
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..|+|+|+||+||||+++.|++.++.++ ++..++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~--i~~d~~ 46 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTH--LSTGEL 46 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE--EcHHHH
Confidence 34699999999999999999999998655 444444
No 356
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.80 E-value=0.0028 Score=63.14 Aligned_cols=106 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHH----hCCeEEEEeccccccc-------------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANE----AGANFIHIKGPELLNK------------------------------- 502 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~----~~~~~~~i~~~~l~~~------------------------------- 502 (702)
+.+.++.-+.|.||+|+||||++++++.. ...--+.++..++...
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Q ss_pred -----------------------------------CcCc---hHHHHHHHHHHHHhCCCeEEEEeC----cchhhcccCC
Q 045279 503 -----------------------------------YVGE---SELAVRTLFSRARTCSPCILFFDE----VDALTTKRGK 540 (702)
Q Consensus 503 -----------------------------------~~g~---~~~~~~~~f~~a~~~~~~vl~iDE----id~l~~~r~~ 540 (702)
+++. ..+.-|-.+.+|....|.+|++|| +|...
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~----- 178 (250)
T 2d2e_A 104 ALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA----- 178 (250)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHH-----
T ss_pred HHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHH-----
Q ss_pred CCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 541 EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 541 ~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
...+..+|..+ ...+..||++|++++.+
T Consensus 179 ------~~~l~~~l~~l----~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 179 ------LKVVARGVNAM----RGPNFGALVITHYQRIL 206 (250)
T ss_dssp ------HHHHHHHHHHH----CSTTCEEEEECSSSGGG
T ss_pred ------HHHHHHHHHHH----HhcCCEEEEEecCHHHH
No 357
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.80 E-value=0.00076 Score=67.78 Aligned_cols=109 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCeE------------------------EE----------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GANF------------------------IH---------- 493 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~~------------------------~~---------- 493 (702)
+.+.++.-+.|.||+|+|||||+++++... +.++ +.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~ 106 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS 106 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCC
Q ss_pred ---------------------------------Eecccc-cccCcCc--hHHHHHHHHHHHHhCCCeEEEEeC-cchhhc
Q 045279 494 ---------------------------------IKGPEL-LNKYVGE--SELAVRTLFSRARTCSPCILFFDE-VDALTT 536 (702)
Q Consensus 494 ---------------------------------i~~~~l-~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDE-id~l~~ 536 (702)
+...++ ..+++++ ..+..|..+.+|....|.||++|| .-.|.
T Consensus 107 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD- 185 (262)
T 1b0u_A 107 HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD- 185 (262)
T ss_dssp TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSC-
T ss_pred CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC-
Q ss_pred ccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 537 KRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 537 ~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
......++..+...... +..||++|+..+.+
T Consensus 186 ----------~~~~~~~~~~l~~l~~~-g~tvi~vtHd~~~~ 216 (262)
T 1b0u_A 186 ----------PELVGEVLRIMQQLAEE-GKTMVVVTHEMGFA 216 (262)
T ss_dssp ----------HHHHHHHHHHHHHHHHT-TCCEEEECSCHHHH
T ss_pred ----------HHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHH
No 358
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.79 E-value=0.00079 Score=62.52 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=27.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+++|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3689999999999999999999999987654
No 359
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.79 E-value=0.00061 Score=63.87 Aligned_cols=31 Identities=39% Similarity=0.645 Sum_probs=24.5
Q ss_pred ceEEEECCCCCCHHHHHHHHHH-HhCCCeEEEec
Q 045279 159 AGILLYGPPGCGKTKLAHAIAN-ETGVPFYKISA 191 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~-~l~~~~~~i~~ 191 (702)
..|+|.|+||+||||+++.|++ .++ +..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPG--FYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTT--EEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCC--cEEecH
Confidence 4589999999999999999998 454 344443
No 360
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.78 E-value=0.00072 Score=67.16 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=29.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
++..|+|.||||+||||+++.|++.++.+++ +..++.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~ 64 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLL 64 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHH
Confidence 4567999999999999999999999976654 444443
No 361
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.77 E-value=0.0028 Score=61.42 Aligned_cols=105 Identities=18% Similarity=0.271 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh----------CCe-------EEEEecc-----------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA----------GAN-------FIHIKGP----------------------- 497 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~----------~~~-------~~~i~~~----------------------- 497 (702)
+.+.++.-+.|.||+|+||||++++++... +.+ +-.+...
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~ 109 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK 109 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCCc
Q ss_pred ----------------cccccCcCc--hHHHHHHHHHHHHhCCCeEEEEeC----cchhhcccCCCCchHHHHHHHHHHH
Q 045279 498 ----------------ELLNKYVGE--SELAVRTLFSRARTCSPCILFFDE----VDALTTKRGKEGGWVVERLLNQLLI 555 (702)
Q Consensus 498 ----------------~l~~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDE----id~l~~~r~~~~~~~~~~~~~~ll~ 555 (702)
++ .+++.. ..+..|-.+.+|....|.+|++|| +|... ...+..++.
T Consensus 110 ~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~-----------~~~l~~~l~ 177 (214)
T 1sgw_A 110 VNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS-----------KHKVLKSIL 177 (214)
T ss_dssp CCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTT-----------HHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH-----------HHHHHHHHH
Q ss_pred hhhCCCCCCcEEEEEecCCCCcc
Q 045279 556 ELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 556 ~l~~~~~~~~~~vI~atn~~~~l 578 (702)
.+. ..+..||++|+.++.+
T Consensus 178 ~~~----~~g~tiiivtHd~~~~ 196 (214)
T 1sgw_A 178 EIL----KEKGIVIISSREELSY 196 (214)
T ss_dssp HHH----HHHSEEEEEESSCCTT
T ss_pred HHH----hCCCEEEEEeCCHHHH
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.77 E-value=0.0024 Score=64.10 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=42.3
Q ss_pred CcceEEEcCCCCChhHHHHHHHHH---hCCeEEEEeccccccc---CcCchHHHHHH----HHHHHHhCCCeEEEEeC
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANE---AGANFIHIKGPELLNK---YVGESELAVRT----LFSRARTCSPCILFFDE 530 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~---~~~~~~~i~~~~l~~~---~~g~~~~~~~~----~f~~a~~~~~~vl~iDE 530 (702)
+.-++|.|+||+||||+|+.|+.. .+.+++.++...+... |....+..++. ....+.. . ..+++|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~-~-~~vIiD~ 79 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALK-N-YWVIVDD 79 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHT-T-SEEEECS
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-C-CEEEEeC
Confidence 345889999999999999999997 6888776665544332 22223333322 2223333 3 6778886
No 363
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.77 E-value=0.00074 Score=75.76 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=26.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
...++|.||||||||+++.+++..+ +.++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 3679999999999999999997754 555555433
No 364
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.77 E-value=0.0016 Score=64.43 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=27.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEecc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGP 497 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~ 497 (702)
.++++||+|+|||.++.+++...+..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999988887666666544
No 365
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.77 E-value=0.00095 Score=62.98 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=26.8
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.++|.|+||+||||+++.|+..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999887643
No 366
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.76 E-value=0.0023 Score=63.26 Aligned_cols=38 Identities=29% Similarity=0.302 Sum_probs=28.2
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHH----hCCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANE----AGANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~----~~~~~~~i~~ 496 (702)
|++++.-++++|+||+|||++|..+|.. .+.+++.++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 5677777899999999999999876543 2555655543
No 367
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.76 E-value=0.00078 Score=63.86 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=26.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..|+|+|+|||||||+++.|++.++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 3569999999999999999999999866543
No 368
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.76 E-value=0.00085 Score=64.74 Aligned_cols=34 Identities=35% Similarity=0.671 Sum_probs=28.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.++|.||||+||+|.|+.||+.++.+. ++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378999999999999999999998665 5555554
No 369
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.76 E-value=0.006 Score=62.29 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=41.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEecccccc----------------cCcCchHHHHHHHHHHHHhC
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKGPELLN----------------KYVGESELAVRTLFSRARTC 521 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~~~l~~----------------~~~g~~~~~~~~~f~~a~~~ 521 (702)
.+..++|+||+|+||||++..+|..+ |..+..+.+..+.. .+.......++..+..+ .
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~ 181 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--S 181 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--c
Confidence 35568899999999999999999755 44555555432110 01112223344444443 5
Q ss_pred CCeEEEEeC
Q 045279 522 SPCILFFDE 530 (702)
Q Consensus 522 ~~~vl~iDE 530 (702)
.+.+|+||-
T Consensus 182 ~~dlvIiDT 190 (296)
T 2px0_A 182 EYDHVFVDT 190 (296)
T ss_dssp GSSEEEEEC
T ss_pred CCCEEEEeC
Confidence 688999993
No 370
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.75 E-value=0.006 Score=57.76 Aligned_cols=102 Identities=21% Similarity=0.192 Sum_probs=58.1
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh---CCeEEEE---ecc------cccccC-----------cCc------hHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA---GANFIHI---KGP------ELLNKY-----------VGE------SELAVRTL 514 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i---~~~------~l~~~~-----------~g~------~~~~~~~~ 514 (702)
..+++|+++|.|||++|-.+|-.+ |..+..+ ++. .++... .-. .....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468899999999999999888765 6665555 221 122222 101 12334555
Q ss_pred HHHHHh----CCCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCC
Q 045279 515 FSRART----CSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRP 575 (702)
Q Consensus 515 f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~ 575 (702)
+..++. ..+++|+|||+-....-+-- ...+ ++..+. ....+.-||.|+|.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l----~~~e----v~~~l~--~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL----PLEE----VISALN--ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS----CHHH----HHHHHH--TSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC----CHHH----HHHHHH--hCcCCCEEEEECCCC
Confidence 555543 45899999998664321100 0122 333333 234455677788764
No 371
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.75 E-value=0.00077 Score=64.73 Aligned_cols=32 Identities=19% Similarity=0.393 Sum_probs=27.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.+..|+|+|+|||||||+++.|++.++.+++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 34569999999999999999999999875544
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.75 E-value=0.00068 Score=66.21 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=28.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..|+|.||||+||||+++.||+.++..+ ++..++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~ 39 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDL 39 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHH
Confidence 45699999999999999999999998654 444443
No 373
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.74 E-value=0.0074 Score=57.13 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=26.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
....|++++++|.||||+|-++|-+. |..+..+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34679999999999999999997664 6666555
No 374
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.73 E-value=0.0019 Score=61.14 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.|+|+||+|+|||||++.|.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4599999999999999999987753
No 375
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.72 E-value=0.0021 Score=66.17 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=30.4
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccc
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPE 498 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~ 498 (702)
..++++||+|+|||++++.||..++..++..+.-.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 46899999999999999999999998888776543
No 376
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.72 E-value=0.0042 Score=66.66 Aligned_cols=35 Identities=31% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
++..++++||+|+||||++..||..+ +..+..+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999999999999998766 556655554
No 377
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.71 E-value=0.011 Score=65.39 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=33.8
Q ss_pred EEEEEecCCCC--CCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 045279 278 VLVIGATNRPD--AVDPALRRPGRFDREIVLGVPDENARVQILS 319 (702)
Q Consensus 278 v~vI~atn~~~--~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~ 319 (702)
|.+|.+|.++. .++..++. -|...|.+...+..+...|+.
T Consensus 379 IhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 379 IHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred eEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 78888888876 78888888 788889999999988888874
No 378
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.68 E-value=0.0024 Score=69.65 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=29.9
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~ 496 (702)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67777778999999999999999888753 446666553
No 379
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.67 E-value=0.001 Score=62.72 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=26.4
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+..++|.|+||+||||+++.|+..++.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 3458999999999999999999999876543
No 380
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.67 E-value=0.0035 Score=65.01 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=25.3
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHH
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~ 181 (702)
|++++.-++|+||||+|||+++..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 6778888999999999999999999865
No 381
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.67 E-value=0.0017 Score=72.14 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
++.-+.|+||+|+|||||+++|++.+
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45679999999999999999999865
No 382
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.67 E-value=0.0057 Score=61.68 Aligned_cols=30 Identities=17% Similarity=0.269 Sum_probs=26.3
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||+++|++.+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345678889999999999999999999876
No 383
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.66 E-value=0.0015 Score=62.60 Aligned_cols=32 Identities=38% Similarity=0.544 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..|+|.|+||+||||+++.|+..++.+++..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 44689999999999999999999999876554
No 384
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.64 E-value=0.0014 Score=63.88 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..|+|.|+||+||||+++.||..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45689999999999999999999999876543
No 385
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.63 E-value=0.0012 Score=66.06 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=28.2
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEec
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKG 496 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 496 (702)
-+++.||||+||||+|+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 36899999999999999999999988876654
No 386
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.63 E-value=0.0011 Score=62.68 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=26.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Q 045279 160 GILLYGPPGCGKTKLAHAIANETG---VPFYKISAT 192 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~ 192 (702)
.|+|.|+|||||||+++.|++.++ .++..++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 489999999999999999999886 235555433
No 387
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.62 E-value=0.0015 Score=63.33 Aligned_cols=38 Identities=24% Similarity=0.399 Sum_probs=30.2
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
..++-|+|.||||+||+|.|+.||+.++.+ .++..+++
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 445668899999999999999999999765 45555554
No 388
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.61 E-value=0.0014 Score=62.35 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+.-++|.|+||+||||+++.||..++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 345689999999999999999999998876544
No 389
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.61 E-value=0.00089 Score=66.66 Aligned_cols=109 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHhCC-eEEEEecccccccCcCchHHHH-------------------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEAGA-NFIHIKGPELLNKYVGESELAV------------------------- 511 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~~~-~~~~i~~~~l~~~~~g~~~~~~------------------------- 511 (702)
+.+.++.-+.|.||+|+|||||+++++..... --+.++..++...-.......+
T Consensus 21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Q ss_pred ---------------------------------HHHHHHHHhCCCe-------EEEEeC-cchhhcccCCCCchHHHHHH
Q 045279 512 ---------------------------------RTLFSRARTCSPC-------ILFFDE-VDALTTKRGKEGGWVVERLL 550 (702)
Q Consensus 512 ---------------------------------~~~f~~a~~~~~~-------vl~iDE-id~l~~~r~~~~~~~~~~~~ 550 (702)
|-.+.+|....|. +|++|| ...|. ....
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD-----------~~~~ 169 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD-----------VAQQ 169 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCC-----------HHHH
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCC-----------HHHH
Q ss_pred HHHHHhhhCCCCCCcEEEEEecCCCCcc
Q 045279 551 NQLLIELDGADKRKGVFVIGATNRPDVM 578 (702)
Q Consensus 551 ~~ll~~l~~~~~~~~~~vI~atn~~~~l 578 (702)
..++..+...... +..||++|++.+.+
T Consensus 170 ~~l~~~l~~l~~~-g~tviivtHd~~~~ 196 (249)
T 2qi9_C 170 SALDKILSALSQQ-GLAIVMSSHDLNHT 196 (249)
T ss_dssp HHHHHHHHHHHHT-TCEEEEECSCHHHH
T ss_pred HHHHHHHHHHHhC-CCEEEEEeCCHHHH
No 390
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.61 E-value=0.0013 Score=61.15 Aligned_cols=29 Identities=28% Similarity=0.678 Sum_probs=26.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.|+||+||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 47999999999999999999999987664
No 391
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.61 E-value=0.0012 Score=64.13 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
...++|.|+||+||||+++.||..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 34689999999999999999999998876654
No 392
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.61 E-value=0.00085 Score=66.79 Aligned_cols=31 Identities=29% Similarity=0.506 Sum_probs=27.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
+..+.|+|++|+||||+++.||+.++.+++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 5679999999999999999999999987654
No 393
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.60 E-value=0.0082 Score=63.21 Aligned_cols=30 Identities=33% Similarity=0.613 Sum_probs=26.6
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|||||||+++|+...
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 356778889999999999999999999876
No 394
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.60 E-value=0.0015 Score=62.63 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=27.9
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEe
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANET-GVPFYKIS 190 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l-~~~~~~i~ 190 (702)
+..|+|.|++|+||||+++.|++.+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4569999999999999999999998 46666553
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.60 E-value=0.0013 Score=63.71 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKI 189 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i 189 (702)
.|+|.|+||+||||+++.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998776543
No 396
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.60 E-value=0.0017 Score=61.62 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=27.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEe
Q 045279 160 GILLYGPPGCGKTKLAHAIANET---GVPFYKIS 190 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l---~~~~~~i~ 190 (702)
.|+|.|+|||||||+++.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 38899999999999999999988 78877654
No 397
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.58 E-value=0.022 Score=62.36 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=33.1
Q ss_pred EEEEEecCCCC--CCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 045279 278 VLVIGATNRPD--AVDPALRRPGRFDREIVLGVPDENARVQILSV 320 (702)
Q Consensus 278 v~vI~atn~~~--~ld~al~r~~Rf~~~i~~~~p~~~er~~Il~~ 320 (702)
+.+|.+|..+. .++..++. .|...|.|...+..+...|+..
T Consensus 333 I~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 333 IHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp EEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHSS
T ss_pred cEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcCC
Confidence 67777787765 58888877 7888899999999999888853
No 398
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.58 E-value=0.0037 Score=70.33 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.++||+|+||||++++++...
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4556668899999999999999999755
No 399
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.57 E-value=0.0015 Score=60.70 Aligned_cols=29 Identities=41% Similarity=0.633 Sum_probs=25.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
-++|.||||+||||+++.| ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4789999999999999999 8888887654
No 400
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.57 E-value=0.0081 Score=65.41 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~ 191 (702)
|+.++.-++|.|+||+|||+|+..+|... +.++.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 67888999999999999999999887654 456666653
No 401
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.56 E-value=0.0064 Score=71.36 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=54.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh-----CCe----EE----------EEecccccccCcCchHHHHHHHHHHHH-hC
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA-----GAN----FI----------HIKGPELLNKYVGESELAVRTLFSRAR-TC 521 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~-----~~~----~~----------~i~~~~l~~~~~g~~~~~~~~~f~~a~-~~ 521 (702)
.+.-++|+||+|+||||+.+.++... +.. -. .+...+.............+++...++ ..
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~ 751 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKAT 751 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhcc
Confidence 34458899999999999999987532 211 01 111111111111111112222222222 46
Q ss_pred CCeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCCCCCCcEEEEEecCCCCccC
Q 045279 522 SPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMD 579 (702)
Q Consensus 522 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~atn~~~~ld 579 (702)
.|.+|++||.-+=.. ......+...++..+.. ..+..+|++|+..+...
T Consensus 752 ~p~LlLLDEP~~GlD------~~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 752 SQSLVILDELGRGTS------THDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TTCEEEEESTTTTSC------HHHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred CCCEEEEeCCCCCCC------HHHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 789999999654221 11113344455555421 23456788899876554
No 402
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.55 E-value=0.0088 Score=62.49 Aligned_cols=30 Identities=33% Similarity=0.619 Sum_probs=26.6
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|.||+|||||||+++|+...
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 356778889999999999999999999876
No 403
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.55 E-value=0.0021 Score=63.43 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=28.3
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEech
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISAT 192 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~ 192 (702)
..++++||+|+|||.++.+++..++.+++.+...
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 3499999999999999999988887777666554
No 404
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.55 E-value=0.0016 Score=61.69 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+.-++|.|+||+||||+++.|+..++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3458899999999999999999999877644
No 405
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.55 E-value=0.0016 Score=63.58 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=28.0
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
..+.|+||+||||||+++.|++.++.+++ +..++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i 39 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAI 39 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCcce
Confidence 45999999999999999999999986654 44444
No 406
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.54 E-value=0.028 Score=62.79 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=79.1
Q ss_pred CcccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHH----HhCCe---EEEEeccccc-----
Q 045279 433 GLDYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVAN----EAGAN---FIHIKGPELL----- 500 (702)
Q Consensus 433 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~----~~~~~---~~~i~~~~l~----- 500 (702)
|.+..++.+.+.+... +......+.++|++|+|||+||+.+++ ..... .+.++.+...
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 7777777776655321 112345678999999999999999996 23221 1223332210
Q ss_pred -------ccC--------c----CchHHHHHHHHHHHHhCC-CeEEEEeCcchhhcccCCCCchHHHHHHHHHHHhhhCC
Q 045279 501 -------NKY--------V----GESELAVRTLFSRARTCS-PCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA 560 (702)
Q Consensus 501 -------~~~--------~----g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~ 560 (702)
... . ......+...+....... +.+|+||+++... .+ .+. ..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~------------~~--~~~-~~--- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE------------TI--RWA-QE--- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH------------HH--HHH-HH---
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch------------hh--ccc-cc---
Confidence 000 0 001122233333333343 7899999988643 11 111 11
Q ss_pred CCCCcEEEEEecCCCCccCccccCCCccceEEEcCCCCHHHHHHHHHHHhc
Q 045279 561 DKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR 611 (702)
Q Consensus 561 ~~~~~~~vI~atn~~~~ld~a~~r~gRf~~~i~~~~p~~~~r~~il~~~~~ 611 (702)
.+..||.||........ . +..+..+.++..+.++-.++|.....
T Consensus 264 ---~gs~ilvTTR~~~v~~~-~---~~~~~~~~l~~L~~~ea~~Lf~~~a~ 307 (549)
T 2a5y_B 264 ---LRLRCLVTTRDVEISNA-A---SQTCEFIEVTSLEIDECYDFLEAYGM 307 (549)
T ss_dssp ---TTCEEEEEESBGGGGGG-C---CSCEEEEECCCCCHHHHHHHHHHTSC
T ss_pred ---CCCEEEEEcCCHHHHHH-c---CCCCeEEECCCCCHHHHHHHHHHHhc
Confidence 23456667764332221 1 11335688999999988888887743
No 407
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.54 E-value=0.0015 Score=62.52 Aligned_cols=28 Identities=25% Similarity=0.631 Sum_probs=25.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
.|+|.|+|||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4899999999999999999999987654
No 408
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.53 E-value=0.0019 Score=61.14 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=27.4
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+.-++|.|+||+||||+++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 45689999999999999999999998766544
No 409
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.53 E-value=0.0017 Score=62.65 Aligned_cols=34 Identities=38% Similarity=0.606 Sum_probs=27.6
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEEeccccc
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELL 500 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~ 500 (702)
.++|.||||+||+|.|+.||+.++.+. ++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 378999999999999999999998754 5545544
No 410
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.52 E-value=0.0013 Score=61.85 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=23.0
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFI 492 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~ 492 (702)
+.-++|.|+||+||||+++.|+..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 345889999999999999999999998876
No 411
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.52 E-value=0.0019 Score=61.94 Aligned_cols=31 Identities=29% Similarity=0.574 Sum_probs=27.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+.-++|.|++|+||||+++.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4568999999999999999999999876654
No 412
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.52 E-value=0.013 Score=63.60 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh----CCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET----GVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l----~~~~~~i~~ 191 (702)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68888899999999999999999887653 456766655
No 413
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.51 E-value=0.0066 Score=71.27 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=22.9
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANE 181 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~ 181 (702)
+..+..++|+||+|+||||+.+.++..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 445678999999999999999998743
No 414
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.51 E-value=0.0046 Score=69.95 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=19.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHh
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
..+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 467999999999999888776543
No 415
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.50 E-value=0.0018 Score=72.09 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.0
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++.-+.|+||+|+|||||+++++..+
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455668899999999999999999754
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.50 E-value=0.0016 Score=63.62 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=27.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.|+|.|+||+||||+++.|++.++.++ ++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~--i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH--IESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE--EchHHH
Confidence 489999999999999999999998654 444444
No 417
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.49 E-value=0.0017 Score=63.65 Aligned_cols=33 Identities=15% Similarity=0.293 Sum_probs=27.6
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+..++|.|+||+||||+++.||..++.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 345689999999999999999999998776543
No 418
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.49 E-value=0.002 Score=61.71 Aligned_cols=36 Identities=33% Similarity=0.534 Sum_probs=28.4
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHhCCeEEEEecccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPEL 499 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 499 (702)
++.-++|.||+|+||||++++|+..++..+ ++..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 455688999999999999999999997644 444443
No 419
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.49 E-value=0.018 Score=59.29 Aligned_cols=38 Identities=24% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
|+.++.-++|.|+||+|||+|+..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 68888999999999999999999987654 345655553
No 420
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.48 E-value=0.01 Score=64.28 Aligned_cols=29 Identities=28% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.+..+..++|+||+|+||||+++.|+..+
T Consensus 289 ~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 289 EGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 45677889999999999999999999876
No 421
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.47 E-value=0.0021 Score=59.92 Aligned_cols=31 Identities=32% Similarity=0.563 Sum_probs=26.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+..++|.||||+||||+++.++..++..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3458899999999999999999998765543
No 422
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.47 E-value=0.0066 Score=68.57 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
.++++.-+.++||+|+||||++++++...
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 34566678999999999999999999755
No 423
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.47 E-value=0.0022 Score=63.14 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=27.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..|+|.|+||+||||+++.||..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35689999999999999999999999776554
No 424
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.46 E-value=0.0013 Score=67.78 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=33.0
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
+..|+|+||+|||||+|+..||+.++..++..+.-.+..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~ 79 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKG 79 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccc
Confidence 3469999999999999999999999988877666554443
No 425
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.45 E-value=0.0017 Score=61.40 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.9
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhC
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
.-++|.||||+||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999886
No 426
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.45 E-value=0.0022 Score=60.93 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHh---CCCeEEE
Q 045279 161 ILLYGPPGCGKTKLAHAIANET---GVPFYKI 189 (702)
Q Consensus 161 vLl~GppGtGKT~la~~la~~l---~~~~~~i 189 (702)
|.|.|++||||||+++.|++.+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 8899999999999999999998 8887654
No 427
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.44 E-value=0.0037 Score=58.98 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETG---VPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~i~~~~l 194 (702)
.++..++|+|+||+||||+++.|+..++ .++..++...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4567799999999999999999999874 44555654443
No 428
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.44 E-value=0.0022 Score=63.69 Aligned_cols=30 Identities=30% Similarity=0.650 Sum_probs=26.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeE
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFY 187 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~ 187 (702)
+..++|+||||+||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467999999999999999999999986543
No 429
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.44 E-value=0.0013 Score=63.25 Aligned_cols=33 Identities=30% Similarity=0.513 Sum_probs=26.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEVV 195 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~ 195 (702)
.|.|+|++||||||+++.|++ ++.+++ +...+.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i--~~d~~~ 35 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVL--DADKLI 35 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEE--EHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEE--EccHHH
Confidence 489999999999999999999 876654 444443
No 430
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.43 E-value=0.0021 Score=59.52 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=26.1
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.|+||+||||+++.|+..++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47899999999999999999999987764
No 431
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.43 E-value=0.0019 Score=62.68 Aligned_cols=30 Identities=27% Similarity=0.497 Sum_probs=26.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 378999999999999999999998766544
No 432
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.43 E-value=0.003 Score=71.19 Aligned_cols=28 Identities=18% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.++||+|+||||++++++...
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4556668999999999999999999755
No 433
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.42 E-value=0.0026 Score=61.15 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
..++..++|+||||+||||+++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34567799999999999999999999885
No 434
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.42 E-value=0.0047 Score=62.83 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=32.4
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
+.-++|.||+|+|||+|+..||+.++..++..+.-.+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~ 49 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKG 49 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEeccccccccc
Confidence 3458899999999999999999999877776665555443
No 435
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.41 E-value=0.0022 Score=61.12 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=27.1
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+.-++|.|+||+||||+++.|+..++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35689999999999999999999998765543
No 436
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.41 E-value=0.002 Score=62.41 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=26.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.|+|.||||+||||+|+.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999998776544
No 437
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.41 E-value=0.0015 Score=61.19 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=23.0
Q ss_pred cceEEEcCCCCChhHHHHHHHH-HhCCeE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN-EAGANF 491 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~-~~~~~~ 491 (702)
.-++|.||||+||||+++.++. .++..+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 4578999999999999999998 455433
No 438
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.41 E-value=0.0048 Score=62.84 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=30.8
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhhhcc
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEVVSG 197 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l~~~ 197 (702)
.-++|.||+|||||+|+..||+.++..++..+.-.+..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~ 42 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRG 42 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceee
Confidence 358899999999999999999999876666555544433
No 439
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.41 E-value=0.0023 Score=63.45 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.++..|+|.||||+||||+|+.|++.++.+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3566799999999999999999999998765543
No 440
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.39 E-value=0.0019 Score=63.05 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=26.7
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+..|+|.||||+||||+++.||..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4568999999999999999999999875543
No 441
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.39 E-value=0.0023 Score=62.74 Aligned_cols=35 Identities=20% Similarity=0.482 Sum_probs=28.7
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..+.|.||||+||||+++.|++.++.++ ++...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~--~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY--LDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc--ccCCcH
Confidence 35699999999999999999999998665 444444
No 442
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.38 E-value=0.0031 Score=73.29 Aligned_cols=23 Identities=22% Similarity=0.197 Sum_probs=18.6
Q ss_pred cceEEEcCCCCChhHHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANE 486 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~ 486 (702)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999977766543
No 443
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.38 E-value=0.014 Score=60.30 Aligned_cols=38 Identities=21% Similarity=0.101 Sum_probs=30.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 67777789999999999999999888654 456666553
No 444
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.36 E-value=0.0022 Score=60.37 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.+..+.|+||+|+|||||++.|++.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345799999999999999999998764
No 445
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.36 E-value=0.0082 Score=65.20 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCCCCcceEEEcCCCCChhHHHHHHHHHh----CCeEEEEec
Q 045279 459 GVDLETGFLLYGPPGCGKTLIAKAVANEA----GANFIHIKG 496 (702)
Q Consensus 459 ~~~~~~~~ll~Gp~GtGKT~la~~la~~~----~~~~~~i~~ 496 (702)
|+.++.-+++.|+||+|||+++..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 67777778999999999999999887643 456666554
No 446
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.36 E-value=0.0028 Score=59.39 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=30.9
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEeccc
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPE 498 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~ 498 (702)
.+.-+.|.|++|+||||+++.++..+ +.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34567899999999999999999987 88888776543
No 447
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.36 E-value=0.0076 Score=64.59 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=42.4
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechhhhcc--------cccccHHHHHHHHHHHHhhCCceEEech
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGV---PFYKISATEVVSG--------VSGASEENIRDLFSKAYRTAPSIVFIDE 225 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~---~~~~i~~~~l~~~--------~~g~~~~~~~~~f~~a~~~~p~il~iDE 225 (702)
++..++|+||+|+||||+++++++.++. .++.+ ...+... ............+..+....|.++++.|
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~-ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV-EDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE-ESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe-cccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 3456899999999999999999998753 23332 2211000 0001111223444555667899999998
Q ss_pred h
Q 045279 226 I 226 (702)
Q Consensus 226 i 226 (702)
+
T Consensus 245 i 245 (418)
T 1p9r_A 245 I 245 (418)
T ss_dssp C
T ss_pred c
Confidence 7
No 448
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.35 E-value=0.0039 Score=60.10 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=25.0
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.++..+.|.||+|+|||||++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567799999999999999999999885
No 449
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.34 E-value=0.0019 Score=62.05 Aligned_cols=32 Identities=38% Similarity=0.505 Sum_probs=26.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
.+.|+||+||||||+++.|++ ++.+++ +...+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~ 35 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVV 35 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc--chHHH
Confidence 488999999999999999998 777764 44444
No 450
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.33 E-value=0.012 Score=61.54 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=26.7
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+.++..+.|+||+|+|||||+++|+...
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 456788889999999999999999999875
No 451
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.32 E-value=0.0023 Score=61.67 Aligned_cols=27 Identities=22% Similarity=0.232 Sum_probs=24.4
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
..|+|.|+|||||||+++.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 469999999999999999999998764
No 452
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.31 E-value=0.013 Score=57.28 Aligned_cols=102 Identities=15% Similarity=0.136 Sum_probs=0.0
Q ss_pred cCCCCCcceEEEcCCCCChhHHHHHHHHHh---------CCeEEEEecccccccCcCchHHHH-----------------
Q 045279 458 FGVDLETGFLLYGPPGCGKTLIAKAVANEA---------GANFIHIKGPELLNKYVGESELAV----------------- 511 (702)
Q Consensus 458 ~~~~~~~~~ll~Gp~GtGKT~la~~la~~~---------~~~~~~i~~~~l~~~~~g~~~~~~----------------- 511 (702)
+.+.++.-+.|.||+|+||||++++++... +..+-.+...... +.+....++
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~ 106 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWI--MPGTIKENIIFGVSYDEYRYRSVIKA 106 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCCC--CSBCHHHHHHTTSCCCHHHHHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCcc--cCCCHHHHhhccCCcChHHHHHHHHH
Q ss_pred -------------------------------HHHHHHHHhCCCeEEEEeC-cchhhcccCCCCchHHHHHHHHHHHh-hh
Q 045279 512 -------------------------------RTLFSRARTCSPCILFFDE-VDALTTKRGKEGGWVVERLLNQLLIE-LD 558 (702)
Q Consensus 512 -------------------------------~~~f~~a~~~~~~vl~iDE-id~l~~~r~~~~~~~~~~~~~~ll~~-l~ 558 (702)
|-.+.+|....|.+|++|| .-.|. ......++.. +.
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD-----------~~~~~~i~~~l~~ 175 (229)
T 2pze_A 107 CQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD-----------VLTEKEIFESCVC 175 (229)
T ss_dssp TTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSC-----------HHHHHHHHHHCCC
T ss_pred hCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCC-----------HHHHHHHHHHHHH
Q ss_pred CCCCCCcEEEEEecCC
Q 045279 559 GADKRKGVFVIGATNR 574 (702)
Q Consensus 559 ~~~~~~~~~vI~atn~ 574 (702)
.... +..||++|+.
T Consensus 176 ~~~~--~~tvi~vtH~ 189 (229)
T 2pze_A 176 KLMA--NKTRILVTSK 189 (229)
T ss_dssp CCTT--TSEEEEECCC
T ss_pred HhhC--CCEEEEEcCC
No 453
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.004 Score=70.02 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++.-+.|.||+|+||||+.++|+..+
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 44557899999999999999999754
No 454
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.31 E-value=0.01 Score=66.90 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=23.8
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.++||+|+||||++++++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3555668999999999999999999755
No 455
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.31 E-value=0.0019 Score=67.15 Aligned_cols=72 Identities=18% Similarity=0.239 Sum_probs=47.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCC--CeEEEechhhhc-----c---cccccHHHHHHHHHHHHhhCCceEEech
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETGV--PFYKISATEVVS-----G---VSGASEENIRDLFSKAYRTAPSIVFIDE 225 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~~--~~~~i~~~~l~~-----~---~~g~~~~~~~~~f~~a~~~~p~il~iDE 225 (702)
.++..++|+||+|+||||++++|++.+.. ..+.++...... . +........+..+..+....|.+|++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 45567999999999999999999988742 234444322100 0 1100112335566777788999999999
Q ss_pred hh
Q 045279 226 ID 227 (702)
Q Consensus 226 id 227 (702)
+-
T Consensus 249 ~~ 250 (330)
T 2pt7_A 249 LR 250 (330)
T ss_dssp CC
T ss_pred CC
Confidence 84
No 456
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.30 E-value=0.0097 Score=67.00 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.6
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++.-+.++||+|+||||++++++...
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555668899999999999999999754
No 457
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.29 E-value=0.0013 Score=63.51 Aligned_cols=30 Identities=13% Similarity=0.012 Sum_probs=25.6
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCe
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPF 186 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~ 186 (702)
.+..|+|.|+|||||||+++.|++.++.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356799999999999999999999876443
No 458
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.29 E-value=0.0029 Score=61.13 Aligned_cols=41 Identities=22% Similarity=0.298 Sum_probs=32.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC----CCeEEEechhhh
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETG----VPFYKISATEVV 195 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~i~~~~l~ 195 (702)
..++..++|.|+||+||||+++.|++.++ .+++.++...+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 34556799999999999999999998774 557777755443
No 459
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.29 E-value=0.0022 Score=61.48 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.3
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.++..+.|+||+|+||||+++.|++.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456679999999999999999999987
No 460
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.29 E-value=0.0028 Score=63.19 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
++..|.|.||+|+||||+++.|++.++..++ +...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i 61 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL--DSGAI 61 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC--CCCce
Confidence 4467999999999999999999999986654 44444
No 461
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.28 E-value=0.003 Score=60.55 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=26.7
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.-|+|.|+||+||||+++.|++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4578999999999999999999998766554
No 462
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.28 E-value=0.0026 Score=58.49 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=26.8
Q ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 153 LGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 153 ~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.++++..+.|.||.|+|||||+++|++.+
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 356777889999999999999999999987
No 463
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.27 E-value=0.0021 Score=61.19 Aligned_cols=34 Identities=21% Similarity=0.365 Sum_probs=28.1
Q ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 159 AGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 159 ~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
..|.|+|++||||||+++.+++.++.++ +++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~v--id~D~~ 46 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHV--VNVDRI 46 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEE--EECcHH
Confidence 3588999999999999999999988766 445444
No 464
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.27 E-value=0.0061 Score=62.45 Aligned_cols=53 Identities=28% Similarity=0.310 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhhccCCC--cccccCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 130 ESVLEELKMEVIVPLYHPQ--LPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 130 ~~~k~~l~~~v~~~~~~~~--~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+++.+.+.+...+.... ..-.+.+.++..+.|+||+|+||||+++.||..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4455555555544332211 0112345677889999999999999999999886
No 465
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.27 E-value=0.0033 Score=61.30 Aligned_cols=30 Identities=27% Similarity=0.445 Sum_probs=26.2
Q ss_pred cceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 464 TGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
..+.|.||+|+||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999876653
No 466
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.26 E-value=0.0028 Score=60.87 Aligned_cols=29 Identities=31% Similarity=0.630 Sum_probs=26.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEE
Q 045279 160 GILLYGPPGCGKTKLAHAIANETGVPFYK 188 (702)
Q Consensus 160 ~vLl~GppGtGKT~la~~la~~l~~~~~~ 188 (702)
.|.|.|++|+||||+++.|++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 58999999999999999999999977754
No 467
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.26 E-value=0.0027 Score=60.84 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.4
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.++.-+.|+||+|+||||+++.|++.+.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4556799999999999999999999864
No 468
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.24 E-value=0.02 Score=62.77 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=28.1
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
..+..|+|+|+||+||||++..||..+ +..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 345689999999999999999998765 566666665
No 469
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.23 E-value=0.0015 Score=63.08 Aligned_cols=29 Identities=21% Similarity=0.189 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGVP 185 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~~ 185 (702)
.+..|+|.|+|||||||+++.|++.++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34579999999999999999999987543
No 470
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.22 E-value=0.0034 Score=60.61 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.5
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETGV 184 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~~ 184 (702)
++.-++|+||+|+||||+++.|+..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4567999999999999999999998753
No 471
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.22 E-value=0.0032 Score=69.87 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHh
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
-+.|.||+|+||||++++|+..+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 46799999999999999999754
No 472
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.22 E-value=0.014 Score=63.33 Aligned_cols=53 Identities=17% Similarity=0.084 Sum_probs=32.2
Q ss_pred ccchhhhHHHHHHHhhChHHHHHcCCCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 435 DYLRHEFDRYIVRRIKFPEEYEEFGVDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 435 ~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
+.++..+.+.+...+.....--.+....+.-++|+||+|+||||+++.|+..+
T Consensus 265 ~~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 265 EALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp GGHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34445555555444332111011223345558899999999999999999876
No 473
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.21 E-value=0.007 Score=74.64 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.4
Q ss_pred CCCCcceEEEcCCCCChhHHHHHHHHHh
Q 045279 460 VDLETGFLLYGPPGCGKTLIAKAVANEA 487 (702)
Q Consensus 460 ~~~~~~~ll~Gp~GtGKT~la~~la~~~ 487 (702)
++++..+.++||+|+||||+++++.+.+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 4566678999999999999999999865
No 474
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.20 E-value=0.025 Score=58.51 Aligned_cols=27 Identities=30% Similarity=0.257 Sum_probs=24.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.++.-+.|+||+|+||||+++.||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999876
No 475
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.19 E-value=0.0031 Score=60.24 Aligned_cols=29 Identities=21% Similarity=0.532 Sum_probs=25.8
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
.++|.|++|+||||+++.|++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 37899999999999999999999987654
No 476
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.19 E-value=0.0029 Score=61.25 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.3
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.|+|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999999999998776554
No 477
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0064 Score=68.40 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
+.++.-+.|+||+|+|||||++.|+..+.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 45678899999999999999999998763
No 478
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.18 E-value=0.0026 Score=63.25 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=28.5
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
+..+.|.|++|+||||+++.+|..++.+|+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 55789999999999999999999999877654
No 479
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.17 E-value=0.0074 Score=63.18 Aligned_cols=53 Identities=28% Similarity=0.310 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhccCCC--cccccCCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 130 ESVLEELKMEVIVPLYHPQ--LPQWLGVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 130 ~~~k~~l~~~v~~~~~~~~--~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
+.+++.+.+.+...+.... ..-.+.+.++..++|+||+|+||||+++.||..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4455555555544433221 1113345677889999999999999999999886
No 480
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.16 E-value=0.01 Score=73.18 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=26.7
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
.++++..+.|+||+|+|||||+++|.+.+.
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 467888899999999999999999998764
No 481
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.16 E-value=0.0035 Score=61.20 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=25.2
Q ss_pred eEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 466 FLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
++|.||||+||||+++.|+..++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 78999999999999999999998765443
No 482
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.16 E-value=0.0071 Score=57.81 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=29.4
Q ss_pred CCCcceEEEcCCCCChhHHHHHHHHHh---CCeEEEEecccc
Q 045279 461 DLETGFLLYGPPGCGKTLIAKAVANEA---GANFIHIKGPEL 499 (702)
Q Consensus 461 ~~~~~~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l 499 (702)
.++.-+.|.||+|+||||++++|+..+ |...+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 445668899999999999999999988 444345554443
No 483
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.15 E-value=0.026 Score=58.22 Aligned_cols=37 Identities=27% Similarity=0.270 Sum_probs=29.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEec
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISA 191 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~ 191 (702)
..++..++|+||+|+||||++..||..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4567789999999999999999998776 455555543
No 484
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.15 E-value=0.003 Score=60.37 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=27.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
+..|.|.|++||||||+++.|++. +.+++ +...+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHH
Confidence 456999999999999999999998 76654 44444
No 485
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.13 E-value=0.016 Score=68.30 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.7
Q ss_pred CCceEEEECCCCCCHHHHHHHHHH
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIAN 180 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~ 180 (702)
.+..++|+||+|+||||+.+.++.
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999843
No 486
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.12 E-value=0.016 Score=68.14 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.1
Q ss_pred cceEEEcCCCCChhHHHHHHHH
Q 045279 464 TGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 464 ~~~ll~Gp~GtGKT~la~~la~ 485 (702)
.-++|+||+|+||||+.+.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999854
No 487
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.11 E-value=0.0035 Score=73.64 Aligned_cols=24 Identities=38% Similarity=0.798 Sum_probs=20.8
Q ss_pred CCcceEEEcCCCCChhHHHHHHHH
Q 045279 462 LETGFLLYGPPGCGKTLIAKAVAN 485 (702)
Q Consensus 462 ~~~~~ll~Gp~GtGKT~la~~la~ 485 (702)
.+.-+.|+||+|+|||||+++|+.
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 444578999999999999999984
No 488
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.11 E-value=0.0041 Score=58.82 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=26.8
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCeEEEEe
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA---GANFIHIK 495 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~ 495 (702)
++|.|+||+||||+++.++..+ +.+++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6899999999999999999988 88887664
No 489
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.09 E-value=0.017 Score=56.65 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=17.7
Q ss_pred CcceEEEcCCCCChhHHHHHHH
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVA 484 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la 484 (702)
+..+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3568999999999998766554
No 490
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.09 E-value=0.0035 Score=59.94 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=27.9
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHh-CCeEEEEe
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEA-GANFIHIK 495 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~-~~~~~~i~ 495 (702)
+.-++|.|++|+||||+++.|+..+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999988 56776654
No 491
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.08 E-value=0.012 Score=56.18 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET---GVPFYKISAT 192 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l---~~~~~~i~~~ 192 (702)
..+.-+.|.|++|+||||+++.|+..+ +.+++.++..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 345679999999999999999999876 4555555433
No 492
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.08 E-value=0.0031 Score=60.34 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Q 045279 157 PMAGILLYGPPGCGKTKLAHAIANETG 183 (702)
Q Consensus 157 ~~~~vLl~GppGtGKT~la~~la~~l~ 183 (702)
++..+.|+||+|+|||||++.|++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999998764
No 493
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.07 E-value=0.0052 Score=61.20 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=31.5
Q ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC--------eEEEechhhhc
Q 045279 158 MAGILLYGPPGCGKTKLAHAIANETGVP--------FYKISATEVVS 196 (702)
Q Consensus 158 ~~~vLl~GppGtGKT~la~~la~~l~~~--------~~~i~~~~l~~ 196 (702)
+..|.|.|++||||||+++.|+..++.+ +..++..++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4569999999999999999999998865 34567666644
No 494
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.06 E-value=0.0033 Score=61.17 Aligned_cols=29 Identities=28% Similarity=0.543 Sum_probs=24.4
Q ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Q 045279 154 GVRPMAGILLYGPPGCGKTKLAHAIANET 182 (702)
Q Consensus 154 ~~~~~~~vLl~GppGtGKT~la~~la~~l 182 (702)
.+.++..+.|+||+|+|||||++.|++.+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45677789999999999999999999977
No 495
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.06 E-value=0.0024 Score=61.46 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEechhh
Q 045279 156 RPMAGILLYGPPGCGKTKLAHAIANET-GVPFYKISATEV 194 (702)
Q Consensus 156 ~~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~i~~~~l 194 (702)
.++.-+.|+|+||+||||+++.|++.+ +.. .++...+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~--~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCS--VISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEE--EEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcE--EEeCCcc
Confidence 455678999999999999999999987 444 3444443
No 496
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.06 E-value=0.0046 Score=58.70 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=26.3
Q ss_pred eEEEcCCCCChhHHHHHHHHHh---CCeEEEEec
Q 045279 466 FLLYGPPGCGKTLIAKAVANEA---GANFIHIKG 496 (702)
Q Consensus 466 ~ll~Gp~GtGKT~la~~la~~~---~~~~~~i~~ 496 (702)
|.|.|++|+||||+++.+++.+ +.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 6899999999999999999998 888876543
No 497
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.05 E-value=0.0026 Score=60.21 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.9
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhC
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAG 488 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~ 488 (702)
-++|.|+||+||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999875
No 498
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.03 E-value=0.0048 Score=60.49 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=26.8
Q ss_pred CcceEEEcCCCCChhHHHHHHHHHhCCeEEE
Q 045279 463 ETGFLLYGPPGCGKTLIAKAVANEAGANFIH 493 (702)
Q Consensus 463 ~~~~ll~Gp~GtGKT~la~~la~~~~~~~~~ 493 (702)
+..+.+.||+|+||||+++.||..++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4568899999999999999999999876643
No 499
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.03 E-value=0.004 Score=59.65 Aligned_cols=29 Identities=31% Similarity=0.512 Sum_probs=25.0
Q ss_pred ceEEEcCCCCChhHHHHHHHHHhCCeEEEE
Q 045279 465 GFLLYGPPGCGKTLIAKAVANEAGANFIHI 494 (702)
Q Consensus 465 ~~ll~Gp~GtGKT~la~~la~~~~~~~~~i 494 (702)
.+.+.|++|+||||+++.++. ++.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 478999999999999999999 88766554
No 500
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.02 E-value=0.005 Score=60.63 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=30.1
Q ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEechhh
Q 045279 155 VRPMAGILLYGPPGCGKTKLAHAIANETGVPFYKISATEV 194 (702)
Q Consensus 155 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~i~~~~l 194 (702)
...+..|.|.|++|+||||+++.|++.++.+++ +...+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCe
Confidence 345567999999999999999999999987654 44444
Done!