BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045281
(481 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 151/470 (32%), Positives = 222/470 (47%), Gaps = 27/470 (5%)
Query: 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSV 64
+ + SPG GHL +VE K ++ H +I P S + S+ +++ SV
Sbjct: 9 VAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGP--PSKAQRTVLDSLPSSISSV 66
Query: 65 TFHQLPPPVSGLLDTLRSPVDLPALAYELGELNNPKLHETLITISKRSNL-KAFVIDFFC 123
PPV L L S + + +NP+L + + + L A V+D F
Sbjct: 67 FL----PPVD--LTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFG 120
Query: 124 SPAFQVSSSTLSIPTYYYFTXXXXXXXXXXYLPTLHKNTTKSFRELGSTLLNYPGLPPFP 183
+ AF V+ +P Y ++ +LP L + + FREL L+ PG P
Sbjct: 121 TDAFDVAVE-FHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFRELTEPLM-LPGCVPVA 178
Query: 184 ARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTPGETLP 243
+D +P DR+ AYK + + ++ G++VNTF LE AIKA+ E PG P
Sbjct: 179 GKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQE----PGLDKP 234
Query: 244 PFYCIXXXXXXXXXXXXXXDRHESLSWLDSKPSRXXXXXXXXXXXXXXXKQLKEMAIGLE 303
P Y + + E L WLD++P +QL E+A+GL
Sbjct: 235 PVYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLA 294
Query: 304 RSGVKFLWVVRAPAPDSVENRSSLES--------LLPEGFLDRTKDRGLVVESWAPQVEV 355
S +FLWV+R+P+ + N S +S LP GFL+RTK RG V+ WAPQ +V
Sbjct: 295 DSEQRFLWVIRSPS--GIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQV 352
Query: 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415
L H S GGF+THCGWNS LE V +G+P++AWPLYAEQKM ++ E+++ L +
Sbjct: 353 LAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAG--D 410
Query: 416 ERLVSAAELEQRVSELMDSEKGXXXXXXXXXXXXXXXXXXXDGGSSRVAL 465
+ LV E+ + V LM+ E+G D G+S AL
Sbjct: 411 DGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/482 (29%), Positives = 223/482 (46%), Gaps = 50/482 (10%)
Query: 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII---IPTAPFVTSAGTDDYIASVSATV 61
++ +PG GHL S +E KL+ + I + P PF D YI SV A+
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPF-----ADSYIKSVLASQ 66
Query: 62 PSVTFHQLP---PPVSGLLDTLRSPVDLPALAYELGELNN--PKLHETLITISKRSNLKA 116
P + LP PP LL +SP Y L L + P + T+ TI + +
Sbjct: 67 PQIQLIDLPEVEPPPQELL---KSPE-----FYILTFLESLIPHVKATIKTILS-NKVVG 117
Query: 117 FVIDFFCSPAFQVSSSTLSIPTYYYFTXXXXXXXXXXYLPTLHKNTTKSFRELGSTLLNY 176
V+DFFC V + IP+Y + T L + LLN
Sbjct: 118 LVLDFFCVSMIDVGNE-FGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNI 176
Query: 177 PGLP-PFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQ 235
PG+ P+ + + +++G Y + + + G+IVNTF LE+ +I A+ +
Sbjct: 177 PGISNQVPSNVLPDACFNKDG-GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD 235
Query: 236 CTPGETLPPFYCIXXXXXXXXXXXXXXDRHES---LSWLDSKPSRXXXXXXXXXXXXXXX 292
E +PP Y + D+ + L WLD +P +
Sbjct: 236 ----EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG 291
Query: 293 -KQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLD--RTKDRGLVVESW 349
Q++E+A+GL+ SGV+FLW + S+ + + PEGFL+ + +G++ W
Sbjct: 292 PSQIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGKGMIC-GW 339
Query: 350 APQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAV 409
APQVEVL H+++GGFV+HCGWNS+LE + GVP+L WP+YAEQ++ +V+E VGL +
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
Query: 410 -TRSEEEERLVSAAELEQRVSELMDSEKGXXXXXXXXXXXXXXXXXXXDGGSSRVALDNL 468
+ +V+A E+E+ + +LMD K DGGSS +++ L
Sbjct: 400 RVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKL 457
Query: 469 VE 470
++
Sbjct: 458 ID 459
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 142/482 (29%), Positives = 223/482 (46%), Gaps = 50/482 (10%)
Query: 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII---IPTAPFVTSAGTDDYIASVSATV 61
++ +PG GHL S +E KL+ + I + P PF D YI SV A+
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPF-----ADSYIKSVLASQ 66
Query: 62 PSVTFHQLP---PPVSGLLDTLRSPVDLPALAYELGELNN--PKLHETLITISKRSNLKA 116
P + LP PP LL +SP Y L L + P + T+ TI + +
Sbjct: 67 PQIQLIDLPEVEPPPQELL---KSPE-----FYILTFLESLIPHVKATIKTILS-NKVVG 117
Query: 117 FVIDFFCSPAFQVSSSTLSIPTYYYFTXXXXXXXXXXYLPTLHKNTTKSFRELGSTLLNY 176
V+DFFC V + IP+Y + T L + LLN
Sbjct: 118 LVLDFFCVSMIDVGNE-FGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNI 176
Query: 177 PGLP-PFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQ 235
PG+ P+ + + +++G Y + + + G+IVNTF LE+ +I A+ +
Sbjct: 177 PGISNQVPSNVLPDACFNKDG-GYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD 235
Query: 236 CTPGETLPPFYCIXXXXXXXXXXXXXXDRHES---LSWLDSKPSRXXXXXXXXXXXXXXX 292
E +PP Y + D+ + L WLD +P +
Sbjct: 236 ----EKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFG 291
Query: 293 -KQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLD--RTKDRGLVVESW 349
Q++E+A+GL+ SGV+FLW + S+ + + PEGFL+ + +G++ W
Sbjct: 292 PSQIREIALGLKHSGVRFLW-----------SNSAEKKVFPEGFLEWMELEGKGMIC-GW 339
Query: 350 APQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAV 409
APQVEVL H+++GGFV+HCGWNS+LE + GVP+L WP+YAEQ++ +V+E VGL +
Sbjct: 340 APQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGL 399
Query: 410 -TRSEEEERLVSAAELEQRVSELMDSEKGXXXXXXXXXXXXXXXXXXXDGGSSRVALDNL 468
+ +V+A E+E+ + +LMD K DGGSS +++ L
Sbjct: 400 RVDYRKGSDVVAAEEIEKGLKDLMD--KDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKL 457
Query: 469 VE 470
++
Sbjct: 458 ID 459
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/496 (23%), Positives = 200/496 (40%), Gaps = 55/496 (11%)
Query: 2 KDTIVLYTSPGRGHLNSMVELGKLI--LTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSA 59
K +V+ P +GH+N + +L KL+ +H F ++ + S G +
Sbjct: 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITF-VNTEYNHKRLLKSRGPKAFDG---- 62
Query: 60 TVPSVTFHQLPPPVSGLLDTLRSPVDLPALAYELGELNNPKLHETLITISKRSNL---KA 116
F +P ++ + D+P L + + E L ++ +N+
Sbjct: 63 -FTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTC 121
Query: 117 FVIDFFCSPAFQVSSST-LSIPTYYYFTXXXXXXXXXXYLPTLHKNTTKSFRE------- 168
V D C +F + ++ +P YF+ + + + F++
Sbjct: 122 LVSD--CCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNG 179
Query: 169 -LGSTLLNYPGLPPFPARDMAEPMH--DREGKAYKGFVDTGIQMAKSAGLIVNTFELLEE 225
L + + PGL F +D+ + + + + F++ ++ K +++NTF LE
Sbjct: 180 CLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELES 239
Query: 226 RAIKAMLEGQCTPGETLPPFYCI-----------XXXXXXXXXXXXXXDRHESLSWLDSK 274
I A+ T+P Y I + E L WL+SK
Sbjct: 240 DVINAL-------SSTIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESK 292
Query: 275 PSRXXXXXXXXXXXXXXXKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEG 334
+QL E A GL FLW++R PD V S + S
Sbjct: 293 EPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR---PDLVIGGSVIFS---SE 346
Query: 335 FLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKM 394
F + DRGL+ SW PQ +VLNH S+GGF+THCGWNS E +CAGVPML WP +A+Q
Sbjct: 347 FTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPT 405
Query: 395 IKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGXXXXXXXXXXXXXXXXX 454
+ E ++G+ + + + E EL + ++E++ +KG
Sbjct: 406 DCRFICNEWEIGMEIDTNVKRE------ELAKLINEVIAGDKGKKMKQKAMELKKKAEEN 459
Query: 455 XXDGGSSRVALDNLVE 470
GG S + L+ +++
Sbjct: 460 TRPGGCSYMNLNKVIK 475
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 25/295 (8%)
Query: 177 PGLPPFPARDMAEP-MHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQ 235
PG P A D+ E + D + G+++ ++ + +N+F + I+ L +
Sbjct: 180 PGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHP-LIENELNSK 238
Query: 236 CTPGETLPPFYCIXXXXXXXXXXXXXXDRHESLSWLDSKPSRXXXXXXXXXXXXXXXKQL 295
+ PF D H L WLD + +L
Sbjct: 239 FKLLLNVGPFNL-------TTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHEL 291
Query: 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEV 355
+A LE G F+W R + LP+GFL+RTK +G +V +WAPQVE+
Sbjct: 292 TALAESLEECGFPFIWSFRGDPKEK----------LPKGFLERTKTKGKIV-AWAPQVEI 340
Query: 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415
L H SVG F+TH GWNSVLE + GVPM++ P + +Q + + +++G+ V +
Sbjct: 341 LKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGV-----D 395
Query: 416 ERLVSAAELEQRVSELMDSEKGXXXXXXXXXXXXXXXXXXXDGGSSRVALDNLVE 470
+++ +++ + M SEKG G+S + L++
Sbjct: 396 NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQ 450
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/268 (27%), Positives = 124/268 (46%), Gaps = 27/268 (10%)
Query: 173 LLNY-PGLPPFPARDMAEPM--HDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIK 229
LLN+ PG+ RD+ E + + + G + K+ + +N+FE L++ ++
Sbjct: 172 LLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDD-SLT 230
Query: 230 AMLEGQCTPGETLPPFYCIXXXXXXXXXXXXXXDRHESLSWLDSKPSRXXXXXXXXXXXX 289
L+ + + PF I + L WL +
Sbjct: 231 NDLKSKLKTYLNIGPFNLITPPPVVP-------NTTGCLQWLKERKPTSVVYISFGTVTT 283
Query: 290 XXXKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESW 349
++ ++ LE S V F+W +R A LPEGFL++T+ G+VV W
Sbjct: 284 PPPAEVVALSEALEASRVPFIWSLRDKA----------RVHLPEGFLEKTRGYGMVV-PW 332
Query: 350 APQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAV 409
APQ EVL HE+VG FVTHCGWNS+ E V GVP++ P + +Q++ +V + +++G+ +
Sbjct: 333 APQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRI 392
Query: 410 TRSEEEERLVSAAELEQRVSELMDSEKG 437
E + + + L +++ EKG
Sbjct: 393 -----EGGVFTKSGLMSCFDQILSQEKG 415
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKV 405
V W PQ+++L S F+TH G S +E + VPM+A P AEQ M +V E+ +
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 406 GLAVTRSEEEERLVSAAELEQRV 428
G + R + V+A +L + V
Sbjct: 366 GRHIPRDQ-----VTAEKLREAV 383
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 349 WAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392
W PQ ++L H F+TH G N + E + G+P + PL+A+Q
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQ 118
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392
V W PQ+ +L + FVTH G EG+ PM+A P +Q
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 346 VESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP 387
+ESW PQ +L H + V H G + L + AGVP L++P
Sbjct: 296 LESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQLSFP 335
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 347 ESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG 406
W P VL H +TH +VLE AGVP++ P +A + A V E+ +G
Sbjct: 286 HQWIPFHSVLAHAR--ACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG 343
Query: 407 LAVTRSEEEE 416
+V R ++ E
Sbjct: 344 -SVLRPDQLE 352
>pdb|1Y07|A Chain A, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|B Chain B, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|C Chain C, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
pdb|1Y07|D Chain D, Crystal Structure Of The Superoxide Reductase From
Treponema Pallidum
Length = 128
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEV 355
+E++ L++ F + APA SV S + +P G +D K++ + P VEV
Sbjct: 3 RELSFFLQKESAGFFLGMDAPAGSSVACGSEVLRAVPVGTVDAAKEKHI------PVVEV 56
Query: 356 LNHE 359
HE
Sbjct: 57 HGHE 60
>pdb|3E0D|A Chain A, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase
Iii Alpha-Subunit
pdb|3E0D|B Chain B, Insights Into The Replisome From The Crystral Structure Of
The Ternary Complex Of The Eubacterial Dna Polymerase
Iii Alpha-Subunit
Length = 1220
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 318 PDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP 351
P+ V N+ +LESL+ G LD DR ++ S P
Sbjct: 926 PEQVVNKRALESLVKAGALDAFGDRARLLASLEP 959
>pdb|2HPI|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-Ray Structure Of Dna Polymerase Iii
pdb|2HPM|A Chain A, Eubacterial And Eukaryotic Replicative Dna Polymerases Are
Not Homologous: X-ray Structure Of Dna Polymerase Iii
Length = 1220
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 318 PDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP 351
P+ V N+ +LESL+ G LD DR ++ S P
Sbjct: 926 PEQVVNKRALESLVKAGALDAFGDRARLLASLEP 959
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,309,431
Number of Sequences: 62578
Number of extensions: 459294
Number of successful extensions: 1318
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 24
length of query: 481
length of database: 14,973,337
effective HSP length: 103
effective length of query: 378
effective length of database: 8,527,803
effective search space: 3223509534
effective search space used: 3223509534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)