Query 045281
Match_columns 481
No_of_seqs 126 out of 1525
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 11:40:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00164 glucosyltransferase; 100.0 2.4E-70 5.3E-75 551.0 47.5 470 2-480 3-479 (480)
2 PLN02992 coniferyl-alcohol glu 100.0 1.2E-69 2.7E-74 540.6 45.1 451 2-475 5-470 (481)
3 PLN03015 UDP-glucosyl transfer 100.0 6.1E-69 1.3E-73 532.3 45.0 457 1-473 1-467 (470)
4 PLN03004 UDP-glycosyltransfera 100.0 3.3E-69 7.2E-74 534.9 41.6 446 2-463 3-450 (451)
5 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.7E-68 3.7E-73 532.1 46.7 437 3-474 8-450 (451)
6 PLN02173 UDP-glucosyl transfer 100.0 1.4E-68 3E-73 530.2 45.6 425 3-473 6-447 (449)
7 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.8E-68 3.9E-73 535.6 45.2 448 2-476 9-473 (477)
8 PLN02555 limonoid glucosyltran 100.0 2.9E-68 6.2E-73 532.2 46.5 450 2-477 7-472 (480)
9 PLN02207 UDP-glycosyltransfera 100.0 3.3E-68 7.2E-73 529.3 44.7 452 1-474 1-465 (468)
10 PLN02562 UDP-glycosyltransfera 100.0 5.6E-67 1.2E-71 522.9 44.5 430 3-473 7-448 (448)
11 PLN02210 UDP-glucosyl transfer 100.0 1.1E-66 2.4E-71 521.3 45.6 433 2-474 8-455 (456)
12 PLN02208 glycosyltransferase f 100.0 1.1E-66 2.4E-71 517.8 44.6 425 2-475 4-440 (442)
13 PLN02534 UDP-glycosyltransfera 100.0 1.2E-66 2.5E-71 521.3 44.8 449 3-475 9-487 (491)
14 PLN02554 UDP-glycosyltransfera 100.0 1E-66 2.2E-71 526.9 44.3 456 1-475 1-479 (481)
15 PLN02152 indole-3-acetate beta 100.0 1.7E-66 3.8E-71 516.0 44.3 436 1-472 1-454 (455)
16 PLN02167 UDP-glycosyltransfera 100.0 6.1E-66 1.3E-70 520.4 44.6 454 1-474 1-472 (475)
17 PLN00414 glycosyltransferase f 100.0 7.8E-66 1.7E-70 512.4 44.4 429 1-478 3-444 (446)
18 PLN02448 UDP-glycosyltransfera 100.0 1.4E-65 3.1E-70 516.8 45.2 436 2-475 10-458 (459)
19 PLN02764 glycosyltransferase f 100.0 1.4E-65 3.1E-70 506.9 44.2 430 2-477 5-448 (453)
20 PLN02670 transferase, transfer 100.0 1.2E-65 2.6E-70 511.6 43.7 442 3-476 7-467 (472)
21 PLN03007 UDP-glucosyltransfera 100.0 4.3E-65 9.3E-70 515.8 44.9 452 2-475 5-481 (482)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.2E-44 6.9E-49 364.0 37.2 375 4-453 22-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 8.9E-46 1.9E-50 381.8 9.8 382 4-453 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1E-41 2.2E-46 340.8 28.6 374 8-471 1-389 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 8.8E-42 1.9E-46 342.7 21.6 372 4-453 2-387 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 3.1E-40 6.6E-45 340.7 22.5 394 3-452 6-437 (496)
27 COG1819 Glycosyl transferases, 100.0 9.6E-39 2.1E-43 315.6 26.0 385 3-473 2-399 (406)
28 PRK12446 undecaprenyldiphospho 99.9 1.1E-25 2.4E-30 219.9 28.0 315 2-436 1-327 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 4.1E-23 8.9E-28 200.8 25.3 302 4-431 2-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 1.9E-22 4.2E-27 194.6 28.2 322 4-447 2-338 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.7E-21 8E-26 186.7 24.8 124 278-436 189-316 (321)
32 PRK00726 murG undecaprenyldiph 99.8 1.4E-17 3.1E-22 164.5 30.4 343 2-472 1-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 8.4E-17 1.8E-21 158.6 27.5 314 4-436 1-326 (350)
34 TIGR01133 murG undecaprenyldip 99.7 1.2E-14 2.5E-19 143.3 28.6 78 351-436 243-323 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 1.4E-15 3.1E-20 150.8 20.6 348 3-469 6-383 (385)
36 COG4671 Predicted glycosyl tra 99.7 1.4E-14 3.1E-19 133.5 23.0 341 3-435 10-366 (400)
37 TIGR03590 PseG pseudaminic aci 99.6 6.6E-14 1.4E-18 132.6 20.7 104 278-398 171-278 (279)
38 PRK00025 lpxB lipid-A-disaccha 99.6 1.9E-13 4.2E-18 136.2 22.6 108 352-473 255-376 (380)
39 PRK13609 diacylglycerol glucos 99.6 3.3E-13 7.1E-18 134.6 23.8 134 277-436 202-340 (380)
40 PF04101 Glyco_tran_28_C: Glyc 99.5 2.7E-15 5.8E-20 131.3 1.9 136 279-436 1-146 (167)
41 PRK13608 diacylglycerol glucos 99.4 6E-11 1.3E-15 118.4 25.7 165 276-474 201-371 (391)
42 PLN02605 monogalactosyldiacylg 99.4 5.2E-11 1.1E-15 118.7 23.6 83 342-436 265-350 (382)
43 TIGR03492 conserved hypothetic 99.3 7.1E-10 1.5E-14 110.3 26.7 167 243-436 180-366 (396)
44 cd03814 GT1_like_2 This family 99.3 9.9E-09 2.1E-13 101.0 30.8 109 341-471 246-362 (364)
45 PF03033 Glyco_transf_28: Glyc 99.3 4.7E-13 1E-17 113.3 -1.0 122 5-147 1-133 (139)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 1.8E-08 3.9E-13 103.2 32.3 138 279-446 264-413 (465)
47 cd03800 GT1_Sucrose_synthase T 99.2 4.5E-08 9.7E-13 98.0 31.2 90 342-445 283-380 (398)
48 cd03794 GT1_wbuB_like This fam 99.1 8.8E-08 1.9E-12 94.8 29.9 141 278-446 220-378 (394)
49 cd03823 GT1_ExpE7_like This fa 99.1 1.9E-07 4E-12 91.6 30.7 82 341-436 242-331 (359)
50 cd03818 GT1_ExpC_like This fam 99.1 6.8E-07 1.5E-11 89.7 34.5 94 341-446 280-379 (396)
51 cd04962 GT1_like_5 This family 99.1 2.9E-07 6.4E-12 91.2 30.0 111 342-473 253-369 (371)
52 cd03816 GT1_ALG1_like This fam 99.0 2.2E-07 4.9E-12 93.6 28.0 91 342-448 294-399 (415)
53 cd03801 GT1_YqgM_like This fam 99.0 6.5E-07 1.4E-11 87.6 30.8 83 340-436 254-343 (374)
54 cd03808 GT1_cap1E_like This fa 99.0 1.3E-06 2.9E-11 85.2 32.8 320 4-436 1-331 (359)
55 PRK10307 putative glycosyl tra 99.0 2.7E-06 5.9E-11 85.8 35.7 115 342-475 284-408 (412)
56 cd03817 GT1_UGDG_like This fam 99.0 8E-07 1.7E-11 87.5 30.9 93 341-448 258-358 (374)
57 PRK05749 3-deoxy-D-manno-octul 99.0 2.7E-07 5.8E-12 93.5 26.4 92 344-447 304-402 (425)
58 COG3980 spsG Spore coat polysa 99.0 4.1E-08 8.9E-13 88.6 17.6 134 279-436 160-295 (318)
59 cd03795 GT1_like_4 This family 99.0 6.2E-07 1.4E-11 88.2 27.2 141 279-446 192-345 (357)
60 cd03798 GT1_wlbH_like This fam 98.9 4.6E-06 1E-10 81.8 31.9 82 341-436 258-346 (377)
61 PF04007 DUF354: Protein of un 98.9 1.8E-06 3.9E-11 83.0 26.1 295 11-432 8-308 (335)
62 TIGR00236 wecB UDP-N-acetylglu 98.9 1.1E-07 2.4E-12 94.3 18.4 106 342-470 255-363 (365)
63 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 2.8E-07 6E-12 91.3 20.8 135 277-436 198-339 (363)
64 TIGR02472 sucr_P_syn_N sucrose 98.9 1E-05 2.2E-10 82.3 31.9 109 342-470 317-436 (439)
65 TIGR03449 mycothiol_MshA UDP-N 98.8 2.1E-05 4.6E-10 79.1 33.8 111 342-474 283-401 (405)
66 cd03796 GT1_PIG-A_like This fa 98.8 1.2E-05 2.6E-10 80.7 31.1 112 342-475 250-368 (398)
67 cd03805 GT1_ALG2_like This fam 98.8 2.2E-05 4.8E-10 78.5 31.3 91 341-446 279-377 (392)
68 cd03825 GT1_wcfI_like This fam 98.8 1.8E-05 3.9E-10 78.1 30.3 111 342-473 244-363 (365)
69 cd03820 GT1_amsD_like This fam 98.8 2.1E-05 4.6E-10 76.3 29.8 90 342-445 235-331 (348)
70 cd03821 GT1_Bme6_like This fam 98.7 1.8E-05 4E-10 77.7 28.8 91 341-447 261-359 (375)
71 cd03819 GT1_WavL_like This fam 98.7 2.8E-05 6.1E-10 76.4 29.9 151 278-449 185-347 (355)
72 cd05844 GT1_like_7 Glycosyltra 98.7 1.4E-05 3E-10 79.1 27.6 92 341-446 244-349 (367)
73 cd03822 GT1_ecORF704_like This 98.7 4.7E-05 1E-09 74.8 29.4 91 341-446 246-347 (366)
74 TIGR02468 sucrsPsyn_pln sucros 98.7 0.00019 4.1E-09 78.1 35.0 92 342-447 548-651 (1050)
75 cd03807 GT1_WbnK_like This fam 98.6 8.8E-05 1.9E-09 72.5 30.5 79 342-436 251-334 (365)
76 cd03811 GT1_WabH_like This fam 98.6 3.2E-05 7E-10 75.1 25.9 82 341-436 245-334 (353)
77 cd03799 GT1_amsK_like This is 98.6 0.00015 3.1E-09 71.2 30.4 82 341-436 235-329 (355)
78 TIGR03088 stp2 sugar transfera 98.6 8.3E-05 1.8E-09 73.9 28.7 111 343-474 256-372 (374)
79 TIGR03087 stp1 sugar transfera 98.6 8.2E-05 1.8E-09 74.7 28.7 109 341-472 279-394 (397)
80 cd04951 GT1_WbdM_like This fam 98.5 6.1E-05 1.3E-09 74.1 25.8 78 342-435 245-327 (360)
81 KOG3349 Predicted glycosyltran 98.5 6.7E-07 1.5E-11 72.8 9.4 120 279-412 5-135 (170)
82 TIGR02470 sucr_synth sucrose s 98.5 0.00031 6.8E-09 74.7 31.8 92 342-445 619-725 (784)
83 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 7.9E-06 1.7E-10 80.6 18.8 130 278-433 202-338 (365)
84 PRK15427 colanic acid biosynth 98.5 0.00024 5.3E-09 71.4 29.6 113 341-474 278-405 (406)
85 cd03812 GT1_CapH_like This fam 98.5 8.9E-05 1.9E-09 72.9 26.1 80 342-436 249-333 (358)
86 PRK14089 ipid-A-disaccharide s 98.5 6.2E-06 1.3E-10 80.0 16.3 158 278-468 168-344 (347)
87 PRK15179 Vi polysaccharide bio 98.5 0.00048 1E-08 73.1 31.5 111 341-470 573-689 (694)
88 COG1519 KdtA 3-deoxy-D-manno-o 98.5 0.00017 3.7E-09 69.8 25.4 333 10-452 56-405 (419)
89 PRK09922 UDP-D-galactose:(gluc 98.4 8.2E-05 1.8E-09 73.6 23.0 131 279-436 181-326 (359)
90 cd04955 GT1_like_6 This family 98.4 0.00055 1.2E-08 67.4 28.9 155 281-471 196-361 (363)
91 TIGR02149 glgA_Coryne glycogen 98.3 0.00086 1.9E-08 66.9 28.4 168 279-474 202-386 (388)
92 cd03802 GT1_AviGT4_like This f 98.3 0.0011 2.4E-08 64.5 27.7 127 280-434 173-308 (335)
93 PF02684 LpxB: Lipid-A-disacch 98.3 0.00016 3.4E-09 70.7 20.9 190 243-463 153-366 (373)
94 PF02350 Epimerase_2: UDP-N-ac 98.3 3.7E-06 8.1E-11 82.1 9.3 133 275-436 178-320 (346)
95 PLN00142 sucrose synthase 98.2 0.0013 2.8E-08 70.2 28.3 82 350-445 654-748 (815)
96 PRK01021 lpxB lipid-A-disaccha 98.2 0.00048 1E-08 70.5 23.3 189 243-451 381-589 (608)
97 cd03806 GT1_ALG11_like This fa 98.2 0.0014 3.1E-08 66.1 26.4 81 341-436 304-394 (419)
98 PLN02275 transferase, transfer 98.2 0.0056 1.2E-07 60.8 29.7 123 3-143 5-134 (371)
99 cd03809 GT1_mtfB_like This fam 98.2 0.0011 2.3E-08 65.2 24.6 81 340-436 251-338 (365)
100 PLN02846 digalactosyldiacylgly 98.1 0.0045 9.7E-08 62.5 27.6 74 345-435 287-364 (462)
101 PRK00654 glgA glycogen synthas 98.0 0.0022 4.7E-08 65.8 22.9 102 354-474 352-462 (466)
102 cd03792 GT1_Trehalose_phosphor 97.9 0.015 3.3E-07 57.7 27.7 110 342-474 252-371 (372)
103 cd04946 GT1_AmsK_like This fam 97.9 0.00034 7.3E-09 70.4 15.6 112 341-469 288-406 (407)
104 cd04950 GT1_like_1 Glycosyltra 97.9 0.033 7.2E-07 55.3 31.3 80 341-436 253-342 (373)
105 cd03791 GT1_Glycogen_synthase_ 97.9 0.0069 1.5E-07 62.3 25.2 84 341-434 350-442 (476)
106 PLN02949 transferase, transfer 97.9 0.041 8.8E-07 56.2 29.9 113 341-475 334-457 (463)
107 PF13844 Glyco_transf_41: Glyc 97.9 0.00032 7E-09 70.0 14.2 143 276-436 283-432 (468)
108 cd04949 GT1_gtfA_like This fam 97.9 0.0033 7.1E-08 62.3 21.6 97 342-449 261-361 (372)
109 COG0381 WecB UDP-N-acetylgluco 97.8 0.00092 2E-08 64.3 16.1 327 1-436 1-343 (383)
110 PF00534 Glycos_transf_1: Glyc 97.7 0.00035 7.6E-09 61.0 11.2 92 341-446 72-171 (172)
111 TIGR02918 accessory Sec system 97.7 0.017 3.6E-07 59.6 24.6 102 342-449 376-482 (500)
112 COG0763 LpxB Lipid A disacchar 97.7 0.0086 1.9E-07 57.7 20.5 202 244-472 157-379 (381)
113 cd03813 GT1_like_3 This family 97.7 0.033 7.2E-07 57.3 26.5 82 341-436 353-444 (475)
114 cd03804 GT1_wbaZ_like This fam 97.6 0.00037 8.1E-09 68.5 11.0 127 280-435 197-327 (351)
115 COG5017 Uncharacterized conser 97.6 0.0012 2.6E-08 53.1 10.8 109 280-411 2-123 (161)
116 PRK15490 Vi polysaccharide bio 97.6 0.12 2.7E-06 53.0 28.6 114 341-474 454-575 (578)
117 PRK15484 lipopolysaccharide 1, 97.6 0.0045 9.8E-08 61.7 17.6 113 342-474 257-377 (380)
118 PF13692 Glyco_trans_1_4: Glyc 97.3 0.0014 3E-08 54.6 8.9 80 341-434 52-135 (135)
119 PLN02316 synthase/transferase 97.3 0.46 1E-05 52.6 30.7 118 342-473 900-1032(1036)
120 PRK10125 putative glycosyl tra 97.3 0.26 5.7E-06 49.5 27.3 114 279-427 242-364 (405)
121 PLN02501 digalactosyldiacylgly 97.2 0.38 8.3E-06 50.6 27.1 76 344-436 603-683 (794)
122 PRK09814 beta-1,6-galactofuran 96.8 0.0076 1.7E-07 58.9 9.8 111 342-471 207-332 (333)
123 COG3914 Spy Predicted O-linked 96.6 0.062 1.3E-06 54.2 14.4 137 275-429 427-573 (620)
124 KOG4626 O-linked N-acetylgluco 96.5 0.075 1.6E-06 54.0 14.4 125 275-412 756-890 (966)
125 cd01635 Glycosyltransferase_GT 96.3 0.66 1.4E-05 41.6 19.0 50 341-392 160-217 (229)
126 PHA01633 putative glycosyl tra 96.2 0.088 1.9E-06 51.0 12.4 85 341-434 200-307 (335)
127 PRK10017 colanic acid biosynth 95.8 2.5 5.4E-05 42.6 28.2 86 353-452 322-408 (426)
128 COG1817 Uncharacterized protei 95.6 2 4.4E-05 40.4 21.2 109 9-145 6-114 (346)
129 TIGR02095 glgA glycogen/starch 95.3 0.57 1.2E-05 48.2 15.4 109 342-473 346-471 (473)
130 PRK14098 glycogen synthase; Pr 94.9 0.47 1E-05 48.9 13.3 116 341-475 361-486 (489)
131 PF13524 Glyco_trans_1_2: Glyc 94.9 0.28 6.2E-06 37.5 9.0 82 367-469 9-91 (92)
132 TIGR02193 heptsyl_trn_I lipopo 94.7 1.3 2.8E-05 42.8 15.3 136 277-432 179-319 (319)
133 PF06722 DUF1205: Protein of u 94.6 0.056 1.2E-06 41.9 4.2 55 262-316 25-84 (97)
134 PHA01630 putative group 1 glyc 94.5 1.1 2.3E-05 43.7 14.0 114 348-474 196-330 (331)
135 TIGR02201 heptsyl_trn_III lipo 94.5 5 0.00011 39.2 18.9 38 4-41 1-38 (344)
136 PF13477 Glyco_trans_4_2: Glyc 94.4 0.64 1.4E-05 38.5 10.7 101 4-141 1-105 (139)
137 PRK10422 lipopolysaccharide co 94.2 6.2 0.00013 38.7 19.7 39 3-41 6-44 (352)
138 PF13579 Glyco_trans_4_4: Glyc 93.1 0.085 1.8E-06 44.6 3.2 97 18-143 6-104 (160)
139 PF12000 Glyco_trans_4_3: Gkyc 92.9 1.4 3.1E-05 38.1 10.3 33 111-144 64-97 (171)
140 cd03789 GT1_LPS_heptosyltransf 92.8 8.6 0.00019 36.2 17.1 38 4-41 1-38 (279)
141 TIGR02400 trehalose_OtsA alpha 91.5 2.5 5.4E-05 43.1 11.9 103 348-473 342-455 (456)
142 PF08660 Alg14: Oligosaccharid 91.3 1.4 3.1E-05 38.1 8.6 119 9-145 4-131 (170)
143 cd03788 GT1_TPS Trehalose-6-Ph 87.7 3.6 7.7E-05 42.1 9.7 104 346-472 345-459 (460)
144 TIGR02919 accessory Sec system 87.6 15 0.00033 37.2 13.9 138 277-451 283-426 (438)
145 PRK14099 glycogen synthase; Pr 87.1 15 0.00033 37.9 14.0 111 345-474 354-478 (485)
146 PLN02939 transferase, transfer 87.1 16 0.00034 40.5 14.3 83 342-433 837-930 (977)
147 PF13439 Glyco_transf_4: Glyco 87.0 5.3 0.00011 34.0 9.3 102 11-146 10-112 (177)
148 TIGR02195 heptsyl_trn_II lipop 86.9 31 0.00067 33.4 18.0 38 4-41 1-38 (334)
149 COG0859 RfaF ADP-heptose:LPS h 84.7 40 0.00088 32.7 18.3 39 3-41 2-40 (334)
150 PRK10916 ADP-heptose:LPS hepto 83.5 46 0.001 32.5 19.1 38 4-41 2-39 (348)
151 PRK06718 precorrin-2 dehydroge 82.3 18 0.00039 32.3 10.6 160 278-469 12-180 (202)
152 PRK02261 methylaspartate mutas 81.9 3.3 7.1E-05 34.5 5.2 41 1-43 1-42 (137)
153 COG4370 Uncharacterized protei 80.9 9 0.0002 36.0 8.0 78 348-436 301-381 (412)
154 PRK02797 4-alpha-L-fucosyltran 80.7 22 0.00048 33.8 10.7 80 342-431 206-291 (322)
155 cd03793 GT1_Glycogen_synthase_ 80.1 7.4 0.00016 40.5 8.0 81 351-435 467-553 (590)
156 COG0003 ArsA Predicted ATPase 79.5 14 0.0003 35.7 9.2 39 3-43 2-41 (322)
157 TIGR03713 acc_sec_asp1 accesso 78.3 6.1 0.00013 41.0 7.0 91 342-451 409-506 (519)
158 COG0438 RfaG Glycosyltransfera 77.7 62 0.0014 30.3 17.0 81 342-436 257-344 (381)
159 PF07429 Glyco_transf_56: 4-al 76.8 48 0.001 32.1 11.7 82 342-433 245-332 (360)
160 PLN03063 alpha,alpha-trehalose 75.6 12 0.00026 41.1 8.6 100 353-475 370-478 (797)
161 COG1618 Predicted nucleotide k 74.3 14 0.00029 31.6 6.6 39 1-41 4-42 (179)
162 PRK06321 replicative DNA helic 73.1 14 0.00031 37.8 7.9 124 5-145 229-389 (472)
163 TIGR01470 cysG_Nterm siroheme 72.6 40 0.00088 30.2 9.9 148 278-454 11-165 (205)
164 KOG2825 Putative arsenite-tran 71.1 6.2 0.00013 36.1 4.1 47 10-58 27-73 (323)
165 PF05159 Capsule_synth: Capsul 70.9 22 0.00047 33.3 8.3 42 344-388 185-226 (269)
166 cd02067 B12-binding B12 bindin 70.8 7.3 0.00016 31.3 4.4 36 4-41 1-36 (119)
167 KOG1250 Threonine/serine dehyd 69.5 73 0.0016 31.4 11.1 114 279-436 196-318 (457)
168 PRK14501 putative bifunctional 68.9 22 0.00048 38.8 8.8 111 346-475 346-463 (726)
169 PF02606 LpxK: Tetraacyldisacc 68.5 30 0.00064 33.6 8.6 37 5-43 40-76 (326)
170 cd01974 Nitrogenase_MoFe_beta 68.0 20 0.00044 36.4 7.8 34 100-141 368-401 (435)
171 PF07801 DUF1647: Protein of u 68.0 18 0.00039 30.2 6.0 66 3-75 60-125 (142)
172 PF04413 Glycos_transf_N: 3-De 67.7 11 0.00024 33.2 5.1 96 11-143 29-126 (186)
173 cd07039 TPP_PYR_POX Pyrimidine 67.6 79 0.0017 27.1 10.6 78 296-387 4-96 (164)
174 TIGR03600 phage_DnaB phage rep 67.2 14 0.00029 37.4 6.3 123 5-144 197-353 (421)
175 PRK08057 cobalt-precorrin-6x r 67.1 34 0.00074 31.7 8.4 34 1-41 1-34 (248)
176 PRK05595 replicative DNA helic 67.0 2.7 5.7E-05 42.8 1.2 123 5-144 204-360 (444)
177 PRK09165 replicative DNA helic 66.6 18 0.00038 37.4 7.1 123 5-144 220-392 (497)
178 PF04464 Glyphos_transf: CDP-G 66.4 11 0.00025 37.1 5.6 116 342-469 252-368 (369)
179 KOG0853 Glycosyltransferase [C 66.1 59 0.0013 33.3 10.3 88 372-475 381-468 (495)
180 TIGR00715 precor6x_red precorr 65.9 51 0.0011 30.7 9.3 32 4-42 2-33 (256)
181 TIGR02095 glgA glycogen/starch 65.9 51 0.0011 33.8 10.4 38 4-43 2-45 (473)
182 PRK08760 replicative DNA helic 65.4 12 0.00027 38.3 5.7 131 4-144 231-388 (476)
183 PRK08506 replicative DNA helic 64.6 22 0.00047 36.5 7.3 123 5-144 195-351 (472)
184 cd07038 TPP_PYR_PDC_IPDC_like 64.4 70 0.0015 27.3 9.4 27 361-387 60-92 (162)
185 PRK05748 replicative DNA helic 64.1 4.6 0.0001 41.2 2.3 38 4-43 205-243 (448)
186 PF06258 Mito_fiss_Elm1: Mitoc 63.2 47 0.001 31.9 8.8 39 351-390 221-259 (311)
187 cd00550 ArsA_ATPase Oxyanion-t 63.1 30 0.00066 32.1 7.4 36 5-42 3-38 (254)
188 PF01075 Glyco_transf_9: Glyco 63.1 22 0.00048 32.6 6.5 98 277-386 105-208 (247)
189 PRK05636 replicative DNA helic 62.3 14 0.00029 38.3 5.3 123 5-144 268-424 (505)
190 PF00731 AIRC: AIR carboxylase 61.2 1E+02 0.0022 26.1 10.2 137 279-453 2-148 (150)
191 PRK07773 replicative DNA helic 61.1 16 0.00036 40.7 6.0 124 5-145 220-377 (886)
192 TIGR02398 gluc_glyc_Psyn gluco 60.9 2.1E+02 0.0045 29.6 14.7 111 344-476 364-484 (487)
193 COG0496 SurE Predicted acid ph 60.8 34 0.00073 31.6 6.9 24 17-43 14-37 (252)
194 cd01965 Nitrogenase_MoFe_beta_ 60.6 38 0.00083 34.3 8.2 34 100-141 362-395 (428)
195 TIGR00665 DnaB replicative DNA 59.5 30 0.00065 35.1 7.2 38 5-44 198-236 (434)
196 PRK05986 cob(I)alamin adenolsy 59.4 1.3E+02 0.0028 26.7 11.3 102 4-123 24-125 (191)
197 PRK10964 ADP-heptose:LPS hepto 59.3 32 0.00069 33.2 7.1 38 4-41 2-39 (322)
198 COG0801 FolK 7,8-dihydro-6-hyd 59.3 29 0.00063 29.6 5.8 35 279-313 3-37 (160)
199 PRK06749 replicative DNA helic 59.2 20 0.00043 36.3 5.7 37 5-43 189-225 (428)
200 PF02310 B12-binding: B12 bind 59.0 21 0.00046 28.5 5.0 35 4-40 2-36 (121)
201 TIGR02015 BchY chlorophyllide 58.6 69 0.0015 32.4 9.5 32 3-41 286-317 (422)
202 PLN02470 acetolactate synthase 58.1 38 0.00082 35.9 7.9 91 283-387 2-109 (585)
203 COG1663 LpxK Tetraacyldisaccha 58.0 25 0.00054 33.8 5.8 35 5-41 52-86 (336)
204 TIGR02655 circ_KaiC circadian 57.8 68 0.0015 33.1 9.5 38 4-43 265-302 (484)
205 PRK06904 replicative DNA helic 57.1 7.3 0.00016 39.9 2.3 57 5-69 224-281 (472)
206 PRK07206 hypothetical protein; 57.0 35 0.00076 34.3 7.2 34 1-41 1-34 (416)
207 COG1703 ArgK Putative periplas 56.8 1.5E+02 0.0033 28.2 10.5 36 4-41 53-88 (323)
208 cd00984 DnaB_C DnaB helicase C 56.7 22 0.00047 32.6 5.3 37 5-43 16-53 (242)
209 TIGR01286 nifK nitrogenase mol 56.5 42 0.00092 34.8 7.7 34 100-141 428-461 (515)
210 COG0552 FtsY Signal recognitio 56.2 37 0.00081 32.7 6.6 40 4-45 141-180 (340)
211 PF12146 Hydrolase_4: Putative 55.9 26 0.00057 25.8 4.5 33 3-37 16-48 (79)
212 cd07035 TPP_PYR_POX_like Pyrim 55.8 1.2E+02 0.0026 25.3 9.8 28 361-388 60-93 (155)
213 PF02826 2-Hacid_dh_C: D-isome 55.7 53 0.0011 28.5 7.3 104 278-430 38-143 (178)
214 COG0541 Ffh Signal recognition 55.4 41 0.00089 33.6 6.9 41 4-46 102-142 (451)
215 PRK13933 stationary phase surv 55.2 1.1E+02 0.0025 28.3 9.5 22 19-43 16-37 (253)
216 COG2185 Sbm Methylmalonyl-CoA 53.9 19 0.00042 29.9 3.8 36 2-39 12-47 (143)
217 PF00448 SRP54: SRP54-type pro 52.5 61 0.0013 28.8 7.2 62 3-70 2-63 (196)
218 COG0052 RpsB Ribosomal protein 52.2 8.7 0.00019 35.0 1.7 33 113-146 156-190 (252)
219 PF02441 Flavoprotein: Flavopr 51.6 27 0.00059 28.5 4.5 36 3-41 1-36 (129)
220 cd00561 CobA_CobO_BtuR ATP:cor 51.1 1.6E+02 0.0034 25.2 11.0 101 4-123 4-105 (159)
221 PRK00784 cobyric acid synthase 50.8 1.8E+02 0.004 30.0 11.3 38 1-40 1-39 (488)
222 cd02070 corrinoid_protein_B12- 49.3 34 0.00074 30.5 5.1 39 3-43 83-121 (201)
223 cd06533 Glyco_transf_WecG_TagA 49.1 94 0.002 26.8 7.7 83 216-315 51-133 (171)
224 PRK07004 replicative DNA helic 49.0 56 0.0012 33.4 7.1 57 5-69 216-273 (460)
225 PF03808 Glyco_tran_WecB: Glyc 48.9 71 0.0015 27.6 6.9 61 216-288 53-113 (172)
226 KOG2941 Beta-1,4-mannosyltrans 47.8 2.5E+02 0.0054 27.4 10.5 127 2-148 12-142 (444)
227 PRK05647 purN phosphoribosylgl 46.4 1.4E+02 0.003 26.7 8.4 88 2-121 1-88 (200)
228 TIGR02370 pyl_corrinoid methyl 46.2 40 0.00086 30.0 5.0 41 3-45 85-125 (197)
229 cd01980 Chlide_reductase_Y Chl 45.9 60 0.0013 32.7 6.8 26 113-142 350-375 (416)
230 TIGR03878 thermo_KaiC_2 KaiC d 45.9 71 0.0015 29.8 6.8 37 5-43 39-75 (259)
231 cd02071 MM_CoA_mut_B12_BD meth 45.7 40 0.00087 27.2 4.5 38 4-43 1-38 (122)
232 PRK04965 NADH:flavorubredoxin 43.9 23 0.00049 35.1 3.4 36 1-41 1-36 (377)
233 TIGR00682 lpxK tetraacyldisacc 43.9 1.4E+02 0.0029 28.8 8.5 36 5-42 33-68 (311)
234 TIGR00064 ftsY signal recognit 43.3 1.3E+02 0.0028 28.3 8.2 38 4-43 74-111 (272)
235 PRK08322 acetolactate synthase 42.9 1.4E+02 0.0029 31.4 9.2 78 296-387 5-96 (547)
236 PF07355 GRDB: Glycine/sarcosi 42.6 54 0.0012 31.8 5.4 47 92-143 63-119 (349)
237 PRK07574 formate dehydrogenase 42.4 1.7E+02 0.0037 29.1 9.2 71 278-376 194-264 (385)
238 cd07037 TPP_PYR_MenD Pyrimidin 42.2 1.2E+02 0.0026 26.0 7.1 27 361-387 61-93 (162)
239 TIGR01425 SRP54_euk signal rec 41.5 1.3E+02 0.0028 30.5 8.1 39 4-44 102-140 (429)
240 cd01425 RPS2 Ribosomal protein 41.3 35 0.00076 30.2 3.8 34 112-146 126-161 (193)
241 PRK06276 acetolactate synthase 41.1 1.7E+02 0.0037 31.0 9.6 78 296-387 5-96 (586)
242 COG1090 Predicted nucleoside-d 40.9 1.7E+02 0.0037 27.6 8.1 25 20-46 12-36 (297)
243 PF06506 PrpR_N: Propionate ca 40.8 35 0.00075 29.7 3.7 31 357-390 33-63 (176)
244 PF06925 MGDG_synth: Monogalac 40.6 82 0.0018 27.0 6.0 25 15-39 1-26 (169)
245 PRK00090 bioD dithiobiotin syn 40.0 1.6E+02 0.0035 26.4 8.1 30 9-40 7-36 (222)
246 PRK03359 putative electron tra 39.7 53 0.0011 30.6 4.8 40 100-144 103-148 (256)
247 cd01124 KaiC KaiC is a circadi 39.1 33 0.00073 29.7 3.4 37 5-43 2-38 (187)
248 PRK10867 signal recognition pa 39.0 1.3E+02 0.0028 30.5 7.8 39 4-44 102-141 (433)
249 TIGR00696 wecB_tagA_cpsF bacte 39.0 1.1E+02 0.0023 26.7 6.4 60 215-287 52-111 (177)
250 cd00532 MGS-like MGS-like doma 38.8 1.5E+02 0.0032 23.5 6.8 85 15-141 10-105 (112)
251 TIGR03880 KaiC_arch_3 KaiC dom 38.8 72 0.0016 28.8 5.6 37 5-43 19-55 (224)
252 PRK05920 aromatic acid decarbo 38.3 44 0.00095 29.9 3.9 38 1-41 2-39 (204)
253 PRK04328 hypothetical protein; 37.9 3.3E+02 0.0071 25.1 10.3 37 5-43 26-62 (249)
254 COG1435 Tdk Thymidine kinase [ 37.9 2.6E+02 0.0056 24.9 8.4 34 6-41 8-41 (201)
255 cd01423 MGS_CPS_I_III Methylgl 37.8 1.8E+02 0.0038 23.1 7.1 93 7-139 4-105 (116)
256 PF05693 Glycogen_syn: Glycoge 37.7 1.1E+02 0.0024 32.2 7.0 94 350-451 461-566 (633)
257 PRK07525 sulfoacetaldehyde ace 37.7 2.6E+02 0.0056 29.7 10.3 79 295-387 9-101 (588)
258 KOG0780 Signal recognition par 37.7 1.4E+02 0.0031 29.5 7.3 41 4-46 103-143 (483)
259 PRK12311 rpsB 30S ribosomal pr 37.1 27 0.00058 33.7 2.5 34 112-146 151-186 (326)
260 PRK07710 acetolactate synthase 36.9 1.9E+02 0.004 30.6 9.1 79 295-387 19-111 (571)
261 PF02776 TPP_enzyme_N: Thiamin 36.7 92 0.002 26.8 5.7 79 296-388 5-98 (172)
262 PF08323 Glyco_transf_5: Starc 36.5 49 0.0011 30.5 4.2 27 14-42 17-43 (245)
263 PRK14099 glycogen synthase; Pr 36.2 54 0.0012 33.8 4.8 40 1-42 1-47 (485)
264 PLN03139 formate dehydrogenase 36.2 1.8E+02 0.0038 29.1 8.1 71 278-376 201-271 (386)
265 PRK04885 ppnK inorganic polyph 36.2 74 0.0016 29.8 5.3 28 358-387 35-68 (265)
266 PRK06067 flagellar accessory p 36.2 64 0.0014 29.4 4.9 38 4-43 27-64 (234)
267 COG4394 Uncharacterized protei 35.7 3.9E+02 0.0085 25.3 11.1 40 343-385 239-281 (370)
268 PRK05632 phosphate acetyltrans 35.6 5.6E+02 0.012 27.8 12.5 38 1-40 1-39 (684)
269 PRK12342 hypothetical protein; 34.9 67 0.0014 29.9 4.7 40 100-144 100-145 (254)
270 TIGR00173 menD 2-succinyl-5-en 34.9 3.2E+02 0.007 27.6 10.1 26 361-386 64-95 (432)
271 PRK06487 glycerate dehydrogena 34.2 1.9E+02 0.0041 27.9 7.9 98 278-429 150-248 (317)
272 PF06180 CbiK: Cobalt chelatas 34.0 56 0.0012 30.6 4.0 39 278-316 2-43 (262)
273 COG1797 CobB Cobyrinic acid a, 33.9 2.5E+02 0.0054 28.3 8.5 30 8-39 7-36 (451)
274 cd02069 methionine_synthase_B1 33.9 80 0.0017 28.5 4.9 39 3-43 89-127 (213)
275 TIGR00959 ffh signal recogniti 33.8 1.7E+02 0.0038 29.6 7.8 39 4-44 101-140 (428)
276 PRK06988 putative formyltransf 33.7 1.6E+02 0.0035 28.3 7.3 35 1-42 1-35 (312)
277 KOG0832 Mitochondrial/chloropl 33.4 28 0.0006 31.4 1.8 113 12-146 90-207 (251)
278 PRK08006 replicative DNA helic 33.3 23 0.00049 36.3 1.5 57 5-69 227-284 (471)
279 PRK10637 cysG siroheme synthas 33.0 4.3E+02 0.0093 27.0 10.7 146 278-455 14-169 (457)
280 cd01452 VWA_26S_proteasome_sub 32.8 1.7E+02 0.0037 25.8 6.7 65 5-72 111-175 (187)
281 TIGR00345 arsA arsenite-activa 32.6 1E+02 0.0022 29.1 5.8 24 20-45 3-26 (284)
282 PF05225 HTH_psq: helix-turn-h 32.6 70 0.0015 20.7 3.2 25 420-447 1-26 (45)
283 PRK15469 ghrA bifunctional gly 32.4 3.4E+02 0.0075 26.1 9.3 68 278-375 138-205 (312)
284 PRK08229 2-dehydropantoate 2-r 32.4 48 0.0011 32.2 3.6 33 1-40 1-33 (341)
285 cd03412 CbiK_N Anaerobic cobal 32.2 84 0.0018 25.6 4.4 38 278-315 2-41 (127)
286 PRK12446 undecaprenyldiphospho 32.0 92 0.002 30.6 5.5 27 358-386 91-120 (352)
287 TIGR00725 conserved hypothetic 31.9 2E+02 0.0042 24.6 6.8 39 350-388 82-123 (159)
288 cd01141 TroA_d Periplasmic bin 31.8 61 0.0013 28.1 3.9 29 113-142 69-99 (186)
289 PRK10416 signal recognition pa 31.6 2.8E+02 0.006 26.8 8.6 38 4-43 116-153 (318)
290 PF02951 GSH-S_N: Prokaryotic 31.4 79 0.0017 25.5 4.0 37 4-42 2-41 (119)
291 PRK07313 phosphopantothenoylcy 31.3 65 0.0014 28.2 3.8 36 3-41 2-37 (182)
292 TIGR01918 various_sel_PB selen 30.9 1E+02 0.0022 30.8 5.3 47 92-143 59-115 (431)
293 TIGR01917 gly_red_sel_B glycin 30.8 1E+02 0.0022 30.8 5.3 47 92-143 59-115 (431)
294 PRK06932 glycerate dehydrogena 30.8 2.2E+02 0.0048 27.4 7.8 99 278-429 149-248 (314)
295 PF10093 DUF2331: Uncharacteri 30.6 1E+02 0.0023 30.3 5.4 93 288-388 190-290 (374)
296 PRK14098 glycogen synthase; Pr 30.4 72 0.0016 32.9 4.6 38 3-42 6-49 (489)
297 PRK14077 pnk inorganic polypho 30.3 1E+02 0.0023 29.2 5.3 56 356-435 62-121 (287)
298 PRK13289 bifunctional nitric o 30.0 87 0.0019 31.2 5.1 64 3-69 262-325 (399)
299 cd01121 Sms Sms (bacterial rad 30.0 3.7E+02 0.0079 26.7 9.2 35 5-41 85-119 (372)
300 PRK08979 acetolactate synthase 29.8 3.3E+02 0.0073 28.7 9.6 79 295-387 7-100 (572)
301 PRK02155 ppnK NAD(+)/NADH kina 29.6 1.2E+02 0.0026 28.9 5.6 55 357-435 62-120 (291)
302 COG4088 Predicted nucleotide k 29.6 69 0.0015 28.7 3.6 34 4-39 3-36 (261)
303 COG3660 Predicted nucleoside-d 29.5 1.7E+02 0.0037 27.3 6.1 37 348-386 234-271 (329)
304 PRK14092 2-amino-4-hydroxy-6-h 29.5 1.2E+02 0.0025 26.1 4.9 31 276-306 6-36 (163)
305 PRK06270 homoserine dehydrogen 29.2 5.5E+02 0.012 25.0 10.3 60 351-411 80-151 (341)
306 PRK15409 bifunctional glyoxyla 29.1 2.8E+02 0.006 26.9 8.1 65 279-373 148-213 (323)
307 PF02702 KdpD: Osmosensitive K 29.0 92 0.002 27.8 4.3 37 3-41 6-42 (211)
308 cd01424 MGS_CPS_II Methylglyox 29.0 2.8E+02 0.0061 21.6 6.9 84 14-140 10-100 (110)
309 cd01981 Pchlide_reductase_B Pc 28.5 83 0.0018 31.8 4.6 28 112-143 369-396 (430)
310 PRK08155 acetolactate synthase 28.3 2.5E+02 0.0053 29.6 8.3 91 283-387 3-109 (564)
311 PRK11269 glyoxylate carboligas 28.2 3.2E+02 0.007 29.0 9.2 79 295-387 7-101 (591)
312 PRK02910 light-independent pro 28.2 81 0.0017 32.9 4.5 27 112-142 361-387 (519)
313 PRK05562 precorrin-2 dehydroge 28.1 4.6E+02 0.01 23.8 9.0 153 267-453 17-179 (223)
314 TIGR03877 thermo_KaiC_1 KaiC d 28.1 2.7E+02 0.0059 25.4 7.6 38 4-43 23-60 (237)
315 PRK01077 cobyrinic acid a,c-di 28.1 3.8E+02 0.0082 27.4 9.3 35 4-40 5-40 (451)
316 PRK10964 ADP-heptose:LPS hepto 28.1 82 0.0018 30.3 4.4 93 279-386 180-278 (322)
317 TIGR00730 conserved hypothetic 27.9 1.7E+02 0.0038 25.4 5.9 36 352-387 89-133 (178)
318 PRK06914 short chain dehydroge 27.9 92 0.002 29.0 4.6 35 1-40 1-35 (280)
319 PRK02649 ppnK inorganic polyph 27.7 1.2E+02 0.0025 29.2 5.2 55 357-435 67-125 (305)
320 PRK04020 rps2P 30S ribosomal p 27.5 26 0.00056 31.3 0.7 33 113-146 114-148 (204)
321 cd01840 SGNH_hydrolase_yrhL_li 27.5 1.2E+02 0.0025 25.3 4.7 37 278-315 52-88 (150)
322 PF02844 GARS_N: Phosphoribosy 27.5 92 0.002 24.3 3.6 86 4-139 2-90 (100)
323 COG0111 SerA Phosphoglycerate 27.4 3E+02 0.0066 26.6 8.0 103 278-430 144-249 (324)
324 PRK06395 phosphoribosylamine-- 27.3 2.4E+02 0.0053 28.6 7.7 32 1-39 1-32 (435)
325 TIGR01012 Sa_S2_E_A ribosomal 27.2 27 0.00058 31.0 0.7 33 113-146 108-142 (196)
326 CHL00067 rps2 ribosomal protei 27.1 52 0.0011 30.1 2.5 35 112-147 160-196 (230)
327 PRK10427 putative PTS system f 27.0 1.4E+02 0.003 23.9 4.6 39 1-41 1-42 (114)
328 PF03641 Lysine_decarbox: Poss 27.0 1.2E+02 0.0027 24.8 4.6 37 352-388 46-92 (133)
329 cd03466 Nitrogenase_NifN_2 Nit 27.0 90 0.002 31.6 4.5 34 100-141 363-396 (429)
330 TIGR01761 thiaz-red thiazoliny 26.9 3.9E+02 0.0084 26.2 8.7 96 297-409 16-120 (343)
331 TIGR01278 DPOR_BchB light-inde 26.9 75 0.0016 33.1 4.0 28 112-143 363-390 (511)
332 PF09314 DUF1972: Domain of un 26.9 4.4E+02 0.0095 23.2 10.7 58 3-72 2-64 (185)
333 PRK08051 fre FMN reductase; Va 26.8 74 0.0016 28.9 3.6 64 3-69 103-166 (232)
334 PRK01911 ppnK inorganic polyph 26.8 1.4E+02 0.003 28.5 5.4 58 354-435 60-121 (292)
335 PF04244 DPRP: Deoxyribodipyri 26.7 72 0.0016 29.0 3.4 29 15-45 47-75 (224)
336 PRK06882 acetolactate synthase 26.5 3.6E+02 0.0078 28.4 9.2 79 295-387 7-100 (574)
337 CHL00076 chlB photochlorophyll 26.0 89 0.0019 32.5 4.3 35 100-142 365-399 (513)
338 PF06745 KaiC: KaiC; InterPro 25.9 63 0.0014 29.2 3.0 38 4-43 21-59 (226)
339 PRK05299 rpsB 30S ribosomal pr 25.9 54 0.0012 30.6 2.5 34 112-146 156-191 (258)
340 TIGR00708 cobA cob(I)alamin ad 25.8 4.4E+02 0.0096 22.9 11.4 34 3-38 6-39 (173)
341 PRK06029 3-octaprenyl-4-hydrox 25.8 98 0.0021 27.2 3.9 37 1-41 1-38 (185)
342 cd01976 Nitrogenase_MoFe_alpha 25.7 87 0.0019 31.6 4.2 35 100-142 360-394 (421)
343 PF02585 PIG-L: GlcNAc-PI de-N 25.5 3E+02 0.0064 22.0 6.7 23 94-120 85-107 (128)
344 PRK05858 hypothetical protein; 25.5 4.7E+02 0.01 27.4 9.7 26 362-387 69-100 (542)
345 cd06188 NADH_quinone_reductase 25.3 91 0.002 29.4 4.0 64 3-69 151-215 (283)
346 PF06626 DUF1152: Protein of u 25.3 3.5E+02 0.0077 25.8 7.7 32 6-39 1-32 (297)
347 cd02065 B12-binding_like B12 b 25.3 1.3E+02 0.0029 23.8 4.6 36 4-41 1-36 (125)
348 COG3195 Uncharacterized protei 25.1 3.6E+02 0.0078 23.1 6.8 76 371-452 88-164 (176)
349 TIGR00118 acolac_lg acetolacta 25.0 4.1E+02 0.0088 27.9 9.2 78 296-387 5-97 (558)
350 cd06212 monooxygenase_like The 24.9 1.2E+02 0.0026 27.4 4.7 63 3-68 104-166 (232)
351 TIGR00750 lao LAO/AO transport 24.8 5.5E+02 0.012 24.4 9.3 39 3-43 35-73 (300)
352 COG1763 MobB Molybdopterin-gua 24.8 1.6E+02 0.0035 25.2 5.0 114 1-145 1-115 (161)
353 PRK00039 ruvC Holliday junctio 24.7 1.8E+02 0.004 24.9 5.4 49 92-145 44-107 (164)
354 PRK06180 short chain dehydroge 24.5 1.1E+02 0.0024 28.4 4.5 33 3-40 4-36 (277)
355 PRK07524 hypothetical protein; 24.5 5.2E+02 0.011 26.9 9.9 26 361-386 65-96 (535)
356 TIGR02852 spore_dpaB dipicolin 24.4 99 0.0021 27.2 3.7 36 4-41 2-37 (187)
357 PRK13185 chlL protochlorophyll 24.3 1.3E+02 0.0027 28.1 4.8 39 1-41 1-39 (270)
358 PRK13604 luxD acyl transferase 24.3 1.4E+02 0.003 28.7 4.9 33 4-38 38-70 (307)
359 TIGR01501 MthylAspMutase methy 24.2 1.7E+02 0.0037 24.2 4.8 39 2-42 1-39 (134)
360 TIGR01011 rpsB_bact ribosomal 24.0 66 0.0014 29.3 2.6 34 112-146 154-189 (225)
361 PRK07449 2-succinyl-5-enolpyru 23.9 2.8E+02 0.0061 29.2 7.8 82 292-387 9-105 (568)
362 COG2230 Cfa Cyclopropane fatty 23.9 88 0.0019 29.6 3.5 40 367-406 80-121 (283)
363 PF00282 Pyridoxal_deC: Pyrido 23.9 1.6E+02 0.0035 29.1 5.6 86 346-434 84-191 (373)
364 PF01210 NAD_Gly3P_dh_N: NAD-d 23.8 79 0.0017 26.8 3.0 30 5-41 2-31 (157)
365 COG2861 Uncharacterized protei 23.7 3.3E+02 0.0071 25.0 6.8 43 93-139 132-177 (250)
366 PRK11823 DNA repair protein Ra 23.7 5.1E+02 0.011 26.4 9.3 36 5-42 83-118 (446)
367 PRK08199 thiamine pyrophosphat 23.6 5.8E+02 0.013 26.8 10.0 26 361-386 72-103 (557)
368 PRK08840 replicative DNA helic 23.6 33 0.0007 35.2 0.6 57 5-69 220-277 (464)
369 PRK10353 3-methyl-adenine DNA 23.5 5.1E+02 0.011 22.8 9.0 78 385-465 22-116 (187)
370 PRK10037 cell division protein 23.3 1.3E+02 0.0028 27.7 4.6 37 1-40 1-38 (250)
371 PF01975 SurE: Survival protei 23.3 79 0.0017 28.1 2.9 27 15-43 12-38 (196)
372 PF05728 UPF0227: Uncharacteri 23.3 1.4E+02 0.003 26.3 4.5 45 99-146 47-92 (187)
373 PF04127 DFP: DNA / pantothena 23.3 85 0.0018 27.6 3.1 21 19-41 32-52 (185)
374 PRK03372 ppnK inorganic polyph 23.3 1.5E+02 0.0032 28.5 5.0 56 356-435 70-129 (306)
375 PRK07282 acetolactate synthase 23.2 4E+02 0.0087 28.1 8.7 79 295-387 13-106 (566)
376 PRK08305 spoVFB dipicolinate s 23.1 1.1E+02 0.0024 27.2 3.7 36 3-41 6-42 (196)
377 PRK06456 acetolactate synthase 23.0 3.8E+02 0.0083 28.2 8.6 27 361-387 69-101 (572)
378 PRK04539 ppnK inorganic polyph 23.0 1.6E+02 0.0034 28.1 5.1 58 354-435 64-125 (296)
379 PRK10818 cell division inhibit 23.0 1.4E+02 0.003 27.8 4.8 40 1-42 1-41 (270)
380 PRK10310 PTS system galactitol 23.0 1.7E+02 0.0037 22.3 4.4 37 1-39 1-38 (94)
381 PRK08266 hypothetical protein; 22.9 6E+02 0.013 26.5 9.9 27 361-387 69-101 (542)
382 cd02034 CooC The accessory pro 22.8 1.5E+02 0.0033 23.6 4.3 36 4-41 1-36 (116)
383 PRK03378 ppnK inorganic polyph 22.7 1.6E+02 0.0035 28.0 5.1 58 354-435 59-120 (292)
384 cd07025 Peptidase_S66 LD-Carbo 22.4 1.8E+02 0.0039 27.5 5.4 75 289-389 45-121 (282)
385 PRK06436 glycerate dehydrogena 22.4 4.7E+02 0.01 25.0 8.2 63 278-373 124-186 (303)
386 PRK06182 short chain dehydroge 22.3 1.4E+02 0.003 27.7 4.6 34 1-39 1-34 (273)
387 PRK06466 acetolactate synthase 22.3 5.4E+02 0.012 27.1 9.5 79 295-387 7-100 (574)
388 PF06506 PrpR_N: Propionate ca 22.2 83 0.0018 27.3 2.9 44 98-146 111-154 (176)
389 PRK10926 ferredoxin-NADP reduc 22.2 1.2E+02 0.0026 27.9 4.1 64 3-69 107-171 (248)
390 PF01497 Peripla_BP_2: Peripla 22.2 1.1E+02 0.0023 27.6 3.8 32 113-145 60-93 (238)
391 COG1484 DnaC DNA replication p 22.1 1.4E+02 0.0031 27.7 4.5 37 3-41 106-142 (254)
392 COG2987 HutU Urocanate hydrata 21.9 1.1E+02 0.0024 30.7 3.7 49 339-387 460-510 (561)
393 PRK01231 ppnK inorganic polyph 21.8 2E+02 0.0043 27.5 5.5 55 357-435 61-119 (295)
394 PRK09302 circadian clock prote 21.7 1.4E+02 0.0031 30.9 4.9 100 5-125 276-375 (509)
395 PRK00048 dihydrodipicolinate r 21.6 4.3E+02 0.0093 24.5 7.7 58 351-412 53-116 (257)
396 cd06210 MMO_FAD_NAD_binding Me 21.6 1.5E+02 0.0033 26.8 4.7 64 3-69 109-172 (236)
397 PRK07586 hypothetical protein; 21.5 5E+02 0.011 26.9 9.0 78 296-387 5-97 (514)
398 COG2099 CobK Precorrin-6x redu 21.4 1.5E+02 0.0032 27.5 4.2 37 100-141 187-228 (257)
399 TIGR00379 cobB cobyrinic acid 21.4 5.2E+02 0.011 26.3 8.8 107 5-146 2-121 (449)
400 TIGR01285 nifN nitrogenase mol 21.3 1.4E+02 0.003 30.3 4.6 34 100-141 364-397 (432)
401 TIGR03457 sulphoacet_xsc sulfo 21.3 7.7E+02 0.017 26.0 10.4 78 296-387 6-97 (579)
402 PRK01372 ddl D-alanine--D-alan 21.2 1.2E+02 0.0026 28.8 4.1 37 1-39 3-43 (304)
403 COG0305 DnaB Replicative DNA h 21.2 2.4E+02 0.0053 28.5 6.1 123 5-143 199-354 (435)
404 cd01147 HemV-2 Metal binding p 21.0 1.3E+02 0.0029 27.5 4.3 31 113-144 74-107 (262)
405 PF01380 SIS: SIS domain SIS d 21.0 1.8E+02 0.0039 23.2 4.6 33 7-41 57-89 (131)
406 PRK06179 short chain dehydroge 21.0 1.5E+02 0.0032 27.4 4.5 33 3-40 4-36 (270)
407 PLN02939 transferase, transfer 20.9 1.7E+02 0.0038 32.8 5.4 39 3-43 482-526 (977)
408 PRK00207 sulfur transfer compl 20.7 1.5E+02 0.0033 24.2 3.9 37 1-39 1-39 (128)
409 PF08542 Rep_fac_C: Replicatio 20.7 3.6E+02 0.0077 19.9 6.2 50 418-475 2-51 (89)
410 PRK13768 GTPase; Provisional 20.5 1.5E+02 0.0033 27.4 4.4 39 1-41 1-39 (253)
411 TIGR03172 probable selenium-de 20.2 1.3E+02 0.0028 27.6 3.7 31 11-43 6-36 (232)
412 PRK06111 acetyl-CoA carboxylas 20.2 8E+02 0.017 24.7 10.0 34 1-41 1-34 (450)
413 PF02310 B12-binding: B12 bind 20.2 2E+02 0.0043 22.7 4.6 38 3-40 52-89 (121)
414 cd03784 GT1_Gtf_like This fami 20.1 4.9E+02 0.011 25.6 8.4 35 279-315 3-37 (401)
415 PRK10117 trehalose-6-phosphate 20.1 5.2E+02 0.011 26.6 8.3 107 348-475 338-454 (474)
416 PRK06048 acetolactate synthase 20.1 5.4E+02 0.012 27.0 8.9 79 295-387 11-103 (561)
No 1
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.4e-70 Score=551.01 Aligned_cols=470 Identities=40% Similarity=0.727 Sum_probs=359.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCC--eEEEEEeCCCCCCCCC-CcchhhhhccCCCCCeEEEEcCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPC--FSIDIIIPTAPFVTSA-GTDDYIASVSATVPSVTFHQLPPPVSGLLD 78 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~--h~Vt~~~~~~~~~~~~-~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~ 78 (481)
|.||+++|||++||++||+.||+.|+.+|++ +.|||+++....+... ..+..+.+......++.|+.+|++..| .
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p--~ 80 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPP--T 80 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCC--C
Confidence 3599999999999999999999999999632 7899999765433100 122222211111226999999876322 3
Q ss_pred CCCCCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhh
Q 045281 79 TLRSPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTL 158 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~ 158 (481)
+.+ +....+........+.++++++++. .+++|||+|.+++|+..+| +++|||++.|+++++..++.+.+++..
T Consensus 81 ~~e---~~~~~~~~~~~~~~~~l~~~L~~l~--~pv~cIV~D~f~~Wa~dVA-~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 81 DAA---GVEEFISRYIQLHAPHVRAAIAGLS--CPVAALVVDFFCTPLLDVA-RELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred ccc---cHHHHHHHHHHhhhHHHHHHHHhcC--CCceEEEECCcchhHHHHH-HHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 333 2223333355566777777777652 2569999999999999999 999999999999999988888776543
Q ss_pred ccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCCC
Q 045281 159 HKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTP 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~ 238 (481)
......++... .....+||++.++..+++..+....+..+..+....+...+.+++++|||.+||+..+..+.+....+
T Consensus 155 ~~~~~~~~~~~-~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 233 (480)
T PLN00164 155 DEEVAVEFEEM-EGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTP 233 (480)
T ss_pred cccccCccccc-CcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccc
Confidence 22111111110 12335899988899999976654433334555555667788999999999999999999987653222
Q ss_pred CCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 045281 239 GETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAP 318 (481)
Q Consensus 239 ~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~ 318 (481)
+...++++.|||++...........+++|.+||++++++|+|||||||+...+.+++++++.+|+.++++|||+++.+..
T Consensus 234 ~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~ 313 (480)
T PLN00164 234 GRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPA 313 (480)
T ss_pred cCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 32236899999997432111111345679999999999999999999999889999999999999999999999985421
Q ss_pred CCcc--ccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHH
Q 045281 319 DSVE--NRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIK 396 (481)
Q Consensus 319 ~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na 396 (481)
.+.. .+.+....+|++|.++.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 314 ~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na 393 (480)
T PLN00164 314 AGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNA 393 (480)
T ss_pred cccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHH
Confidence 1000 00012235889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 397 AVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSE--KGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 397 ~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
+++++++|+|+.+....++++.++.++|.++|+++|.|+ +++.+|++|+++++.+++++.+|||+++++++|++.+++
T Consensus 394 ~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 394 FELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRH 473 (480)
T ss_pred HHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 988778999999964210123479999999999999865 378899999999999999999999999999999999999
Q ss_pred hccCCC
Q 045281 475 GCMAPL 480 (481)
Q Consensus 475 ~~~~~~ 480 (481)
.+++|.
T Consensus 474 ~~~~~~ 479 (480)
T PLN00164 474 GAVAPT 479 (480)
T ss_pred ccCCCC
Confidence 988763
No 2
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.2e-69 Score=540.55 Aligned_cols=451 Identities=32% Similarity=0.589 Sum_probs=349.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTL 80 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (481)
|.||+++|+|++||++|++.||+.|+ .+| +.|||+++.. +.. .+.+.....+++.++.+|++..+ +.
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g--~~vT~v~t~~--n~~-----~~~~~~~~~~~i~~~~lp~p~~~---gl 72 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHG--FHVTVFVLET--DAA-----SAQSKFLNSTGVDIVGLPSPDIS---GL 72 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCC--cEEEEEeCCC--chh-----hhhhccccCCCceEEECCCcccc---CC
Confidence 46999999999999999999999998 799 9999999653 221 11110011236999999875432 11
Q ss_pred C-CCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhc
Q 045281 81 R-SPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLH 159 (481)
Q Consensus 81 ~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 159 (481)
. ...+....+........+.+++++++.. .+|+|||+|.+++|+..+| +++|||++.|++++++.++.+.+.+...
T Consensus 73 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~p~cvV~D~f~~Wa~dVA-~elgIP~v~F~t~sA~~~~~~~~~~~~~ 149 (481)
T PLN02992 73 VDPSAHVVTKIGVIMREAVPTLRSKIAEMH--QKPTALIVDLFGTDALCLG-GEFNMLTYIFIASNARFLGVSIYYPTLD 149 (481)
T ss_pred CCCCccHHHHHHHHHHHhHHHHHHHHHhcC--CCCeEEEECCcchhHHHHH-HHcCCCEEEEecCcHHHHHHHHhhhhhc
Confidence 1 1112233344455566778888887642 3789999999999999999 9999999999999998877666655432
Q ss_pred cCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCCCC
Q 045281 160 KNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTPG 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 239 (481)
......... ......+||+++++..+++..+.+.....+..+.+......+++++++|||.+||+.+++++.+.... +
T Consensus 150 ~~~~~~~~~-~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~-~ 227 (481)
T PLN02992 150 KDIKEEHTV-QRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLL-G 227 (481)
T ss_pred ccccccccc-CCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccc-c
Confidence 211100000 11234589998888888886554444445666677777788899999999999999999988653111 1
Q ss_pred CC-CCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCC
Q 045281 240 ET-LPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAP 318 (481)
Q Consensus 240 ~~-~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~ 318 (481)
+. .++++.|||+...... . ..+.+|.+||++++++++|||||||+...+.+++++++.+|+.++++|||+++.+..
T Consensus 228 ~~~~~~v~~VGPl~~~~~~-~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~ 304 (481)
T PLN02992 228 RVARVPVYPIGPLCRPIQS-S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVD 304 (481)
T ss_pred cccCCceEEecCccCCcCC-C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 11 1579999999764221 1 334579999999998999999999999999999999999999999999999974311
Q ss_pred CCc--------ccc--ccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccc
Q 045281 319 DSV--------ENR--SSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 319 ~~~--------~~~--~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~ 388 (481)
++. .++ .+..+.+|++|.+|.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~ 384 (481)
T PLN02992 305 GSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPL 384 (481)
T ss_pred cccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCc
Confidence 100 000 0112358999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHH
Q 045281 389 YAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMR--DGGSSRVALD 466 (481)
Q Consensus 389 ~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~--~~g~~~~~~~ 466 (481)
++||+.||+++++++|+|+.++.. ++.++.++|+++|.++|.+++++.++++|+++++.+++|+. +||||+++++
T Consensus 385 ~~DQ~~na~~~~~~~g~gv~~~~~---~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~ 461 (481)
T PLN02992 385 FAEQNMNAALLSDELGIAVRSDDP---KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLC 461 (481)
T ss_pred cchhHHHHHHHHHHhCeeEEecCC---CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999997678999999752 12389999999999999887788899999999999999994 6999999999
Q ss_pred HHHHHHHhh
Q 045281 467 NLVESFKRG 475 (481)
Q Consensus 467 ~l~~~~~~~ 475 (481)
+|++.+++-
T Consensus 462 ~~v~~~~~~ 470 (481)
T PLN02992 462 RVTKECQRF 470 (481)
T ss_pred HHHHHHHHH
Confidence 999998764
No 3
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=6.1e-69 Score=532.34 Aligned_cols=457 Identities=31% Similarity=0.581 Sum_probs=351.7
Q ss_pred CCc-EEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCC
Q 045281 1 MKD-TIVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLD 78 (481)
Q Consensus 1 m~~-~il~~~~~~~GH~~P~l~La~~L~~~-G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~ 78 (481)
|.+ ||+++|+|++||++||+.||+.|+.+ | ..|||+++....+.. .-+..+.+.. ..+++.++.+|++..+
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g--~~vT~v~t~~~~~~~-~~~~~~~~~~-~~~~i~~~~lp~~~~~--- 73 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLN--IHVTILAVTSGSSSP-TETEAIHAAA-ARTTCQITEIPSVDVD--- 73 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCC--CeEEEEECCCchhhh-cccccccccc-CCCceEEEECCCCccc---
Confidence 454 99999999999999999999999987 9 999999866543321 0011121110 1126999999866322
Q ss_pred CCCCC-CChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCC-eEEEecccHHHHHHHHHhh
Q 045281 79 TLRSP-VDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIP-TYYYFTSGGSGLAALLYLP 156 (481)
Q Consensus 79 ~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP-~v~~~~~~~~~~~~~~~~~ 156 (481)
+.... .+....+...++...+.++++|+++. .+++|||+|.+++|+..+| +++||| .+.+++++++..+.+++++
T Consensus 74 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~ciV~D~f~~w~~~vA-~~lgIP~~~~f~~~~a~~~~~~~~l~ 150 (470)
T PLN03015 74 NLVEPDATIFTKMVVKMRAMKPAVRDAVKSMK--RKPTVMIVDFFGTALMSIA-DDVGVTAKYVYIPSHAWFLAVMVYLP 150 (470)
T ss_pred cCCCCCccHHHHHHHHHHhchHHHHHHHHhcC--CCCeEEEEcCCcHHHHHHH-HHcCCCEEEEEcCHHHHHHHHHHhhh
Confidence 21111 13444566677778888888888763 3689999999999999999 999999 6888888888877777765
Q ss_pred hhccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccC
Q 045281 157 TLHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQC 236 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 236 (481)
............. ...+.+||+++++..+++..+.+.....+..+.+..+...+++++++|||.+||+..+..+.+.+.
T Consensus 151 ~~~~~~~~~~~~~-~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~ 229 (470)
T PLN03015 151 VLDTVVEGEYVDI-KEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDME 229 (470)
T ss_pred hhhcccccccCCC-CCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcc
Confidence 4322111110010 123458999999999999765444333355566666778889999999999999999999876421
Q ss_pred CCCCC-CCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 045281 237 TPGET-LPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 237 ~~~~~-~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~ 315 (481)
+ ++. .+++++|||+....... +.+++|.+|||+++++|+|||||||+...+.+++++++.+|+.++++|||+++.
T Consensus 230 ~-~~~~~~~v~~VGPl~~~~~~~---~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~ 305 (470)
T PLN03015 230 L-NRVMKVPVYPIGPIVRTNVHV---EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRR 305 (470)
T ss_pred c-ccccCCceEEecCCCCCcccc---cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 0 000 14699999997532111 223579999999999999999999999999999999999999999999999975
Q ss_pred CCCC--Cc-cccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccch
Q 045281 316 PAPD--SV-ENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392 (481)
Q Consensus 316 ~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ 392 (481)
+... +. .++.+..+.+|++|.+|.+.+++++.+|+||.++|+|+++++|||||||||++|++++|||||++|+++||
T Consensus 306 ~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ 385 (470)
T PLN03015 306 PASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQ 385 (470)
T ss_pred CccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccch
Confidence 3210 00 00001233689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 045281 393 KMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDS--EKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~--~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (481)
+.||+++++.+|+|+.+.... .++.++.++|+++|+++|.+ ++++++|+||++|++++++|+.+|||+++++++|++
T Consensus 386 ~~na~~~~~~~gvg~~~~~~~-~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~ 464 (470)
T PLN03015 386 WMNATLLTEEIGVAVRTSELP-SEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAK 464 (470)
T ss_pred HHHHHHHHHHhCeeEEecccc-cCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999988899999996310 22359999999999999963 558899999999999999999999999999999998
Q ss_pred HHH
Q 045281 471 SFK 473 (481)
Q Consensus 471 ~~~ 473 (481)
.++
T Consensus 465 ~~~ 467 (470)
T PLN03015 465 RCY 467 (470)
T ss_pred hcc
Confidence 874
No 4
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-69 Score=534.94 Aligned_cols=446 Identities=47% Similarity=0.860 Sum_probs=340.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLR 81 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (481)
++||+++|+|++||++||+.||+.|+.+|+.+.||++.+++..+.. .....++......++++|+.+|++ .+.+.+..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~-~~~~~~~~ 80 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPE-STATYISSVSSSFPSITFHHLPAV-TPYSSSST 80 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhh-hhhhhhccccCCCCCeEEEEcCCC-CCCCCccc
Confidence 4699999999999999999999999999843456665544443321 111112222122357999999876 32112222
Q ss_pred CCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhccC
Q 045281 82 SPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLHKN 161 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (481)
...+....+........+.+.++++++.+..+++|||+|.+++|+..+| +++|||++.|++++++.++.+.+++.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA-~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 81 SRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDIT-ADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHH-HHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 2223334455555667777888888764333569999999999999999 999999999999999998888776542211
Q ss_pred C-CCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCCCCC
Q 045281 162 T-TKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTPGE 240 (481)
Q Consensus 162 ~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~ 240 (481)
. ..... ......+||++.++..+++.++.......++.+.+....+.+.+++++|||.+||+.++..+.....
T Consensus 160 ~~~~~~~--~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~---- 233 (451)
T PLN03004 160 TPGKNLK--DIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELC---- 233 (451)
T ss_pred ccccccc--cCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCC----
Confidence 1 00110 0122458999988999999866554444456666777777888999999999999999999865320
Q ss_pred CCCCeEeccccCCCCCCCCC-CCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCC
Q 045281 241 TLPPFYCIGPVVGGGNGENR-GRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPD 319 (481)
Q Consensus 241 ~~~~~~~vGpl~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~ 319 (481)
.++++.|||++........ ...+.+|.+||++++++++|||||||+...+.+++++++.+|+.++.+|||+++.....
T Consensus 234 -~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~ 312 (451)
T PLN03004 234 -FRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPEL 312 (451)
T ss_pred -CCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc
Confidence 1579999999753221100 01235699999999999999999999999999999999999999999999999853110
Q ss_pred CccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHH
Q 045281 320 SVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVV 399 (481)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v 399 (481)
. ....+....+|++|++|.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++
T Consensus 313 ~-~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~ 391 (451)
T PLN03004 313 E-KTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMI 391 (451)
T ss_pred c-ccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHH
Confidence 0 000011224899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 045281 400 VEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRV 463 (481)
Q Consensus 400 ~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 463 (481)
++++|+|+.++.. +++.+++++|+++|+++|.|++ |+++|+++++++++|+++||||++
T Consensus 392 ~~~~g~g~~l~~~--~~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 392 VDEIKIAISMNES--ETGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHhCceEEecCC--cCCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCCCCCC
Confidence 8778999999753 2234899999999999999887 999999999999999999999864
No 5
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.7e-68 Score=532.11 Aligned_cols=437 Identities=25% Similarity=0.431 Sum_probs=338.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC-CC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDT-LR 81 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~-~~ 81 (481)
+||+++|+|++||++||+.||+.|+.+| +.|||+++...... .. ...+++.|..+|++ +| ++ .+
T Consensus 8 ~HVvlvPfpaqGHi~P~l~LAk~La~~G--~~VT~v~T~~n~~~-----~~-----~~~~~i~~~~ip~g-lp--~~~~~ 72 (451)
T PLN02410 8 RRVVLVPVPAQGHISPMMQLAKTLHLKG--FSITIAQTKFNYFS-----PS-----DDFTDFQFVTIPES-LP--ESDFK 72 (451)
T ss_pred CEEEEECCCccccHHHHHHHHHHHHcCC--CEEEEEeCcccccc-----cc-----cCCCCeEEEeCCCC-CC--ccccc
Confidence 4999999999999999999999999999 99999996532111 00 11246999998864 55 32 23
Q ss_pred CCCChHHHHHHHHHHhhHHHHHHHHHhhc--cCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhc
Q 045281 82 SPVDLPALAYELGELNNPKLHETLITISK--RSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLH 159 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 159 (481)
+. .....+........+.++++++++.. ..+++|||+|.+++|+..+| +++|||++.|++++++.++.+.+++...
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA-~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 150 (451)
T PLN02410 73 NL-GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAA-KEFKLPNVIFSTTSATAFVCRSVFDKLY 150 (451)
T ss_pred cc-CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHH-HHcCCCEEEEEccCHHHHHHHHHHHHHH
Confidence 22 22332333334566778888877642 24679999999999999999 9999999999999999887776654432
Q ss_pred cCCC-Cccccc-CCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCC
Q 045281 160 KNTT-KSFREL-GSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 160 ~~~~-~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 237 (481)
.... .+.... ......+|++++++..+++.............+.. .....+.+++++|||.+||+.+++++.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~-- 227 (451)
T PLN02410 151 ANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRN-TVDKRTASSVIINTASCLESSSLSRLQQQL-- 227 (451)
T ss_pred hccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHH-HhhcccCCEEEEeChHHhhHHHHHHHHhcc--
Confidence 2111 111110 11223588988888888876443322222232322 224567889999999999999999987643
Q ss_pred CCCCCCCeEeccccCCCCCCC-CCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 045281 238 PGETLPPFYCIGPVVGGGNGE-NRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~-~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~ 316 (481)
+ +++++|||++...... ..++.+.+|.+||++++++++|||||||+...+.+++.+++.+|+.++++|||+++.+
T Consensus 228 -~---~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~ 303 (451)
T PLN02410 228 -Q---IPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPG 303 (451)
T ss_pred -C---CCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 2 5899999997643211 1112345689999999999999999999999999999999999999999999999843
Q ss_pred CCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHH
Q 045281 317 APDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIK 396 (481)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na 396 (481)
... +.+....+|++|.+|.+.++ .+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 304 ~~~----~~~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na 378 (451)
T PLN02410 304 SVR----GSEWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNA 378 (451)
T ss_pred ccc----ccchhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHH
Confidence 100 00122348999999987555 5559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 397 AVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 397 ~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
+++++.+|+|+.+.. . +++++|+++|+++|.+++++.||++|++|++.+++|+.+|||+++++++|++.++.
T Consensus 379 ~~~~~~~~~G~~~~~---~---~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 379 RYLECVWKIGIQVEG---D---LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHhCeeEEeCC---c---ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 999888899999985 4 99999999999999887788899999999999999999999999999999999864
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.4e-68 Score=530.17 Aligned_cols=425 Identities=25% Similarity=0.443 Sum_probs=338.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCC-CCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLD-TLR 81 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~-~~~ 81 (481)
.||+++|+|++||++||+.||+.|+.+| +.|||+++....+. +.. ...++++|+.++++ +| + +.+
T Consensus 6 ~hvv~~P~paqGHi~P~l~lAk~La~~G--~~vT~v~t~~~~~~-------~~~--~~~~~i~~~~ipdg-lp--~~~~~ 71 (449)
T PLN02173 6 GHVLAVPFPSQGHITPIRQFCKRLHSKG--FKTTHTLTTFIFNT-------IHL--DPSSPISIATISDG-YD--QGGFS 71 (449)
T ss_pred cEEEEecCcccccHHHHHHHHHHHHcCC--CEEEEEECCchhhh-------ccc--CCCCCEEEEEcCCC-CC--Ccccc
Confidence 4999999999999999999999999999 99999996543221 111 11246999999863 55 4 223
Q ss_pred CCCChHHHHHHHHHHhhHHHHHHHHHhhccCCc-cEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhcc
Q 045281 82 SPVDLPALAYELGELNNPKLHETLITISKRSNL-KAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLHK 160 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~p-D~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 160 (481)
+..+....+........+.+++++++.....+| +|||+|.+++|+..+| +++|||.+.|++++++....+++. ...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA-~elgIP~v~F~~~~a~~~~~~~~~-~~~- 148 (449)
T PLN02173 72 SAGSVPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLA-REFGLAAAPFFTQSCAVNYINYLS-YIN- 148 (449)
T ss_pred cccCHHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHH-HHhCCCEEEEechHHHHHHHHHhH-Hhc-
Confidence 333443323333336677888888775322244 9999999999999999 999999999999988877655432 111
Q ss_pred CCCCcccccCCcccCCCCCCCCCCCcCCCcccCC--CchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCCC
Q 045281 161 NTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDR--EGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTP 238 (481)
Q Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~ 238 (481)
. ......+|++|.++..+++.++... .+..+..+.+..+...+.+++++|||.+||+.+++.+...
T Consensus 149 ~--------~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---- 216 (449)
T PLN02173 149 N--------GSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV---- 216 (449)
T ss_pred c--------CCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc----
Confidence 1 0112347899888888998766432 2334555667777788899999999999999998888542
Q ss_pred CCCCCCeEeccccCCCC-------C-CC---CCC--CCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC
Q 045281 239 GETLPPFYCIGPVVGGG-------N-GE---NRG--RDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERS 305 (481)
Q Consensus 239 ~~~~~~~~~vGpl~~~~-------~-~~---~~~--~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 305 (481)
++++.|||++... . .. +.| +.+++|.+||++++++++|||||||+...+.+++.+++.+| +
T Consensus 217 ----~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s 290 (449)
T PLN02173 217 ----CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--S 290 (449)
T ss_pred ----CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--c
Confidence 4699999997421 0 00 001 12346999999999999999999999999999999999999 7
Q ss_pred CCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEe
Q 045281 306 GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (481)
Q Consensus 306 ~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~ 385 (481)
+.+|+|+++.+ ....+|++|.++..++|+++.+|+||.+||+|+++++|||||||||++||+.+|||||+
T Consensus 291 ~~~flWvvr~~----------~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~ 360 (449)
T PLN02173 291 NFSYLWVVRAS----------EESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVA 360 (449)
T ss_pred CCCEEEEEecc----------chhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEe
Confidence 78899999753 12247889999987788999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 045281 386 WPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVAL 465 (481)
Q Consensus 386 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 465 (481)
+|+++||+.||+++++.||+|+.+..+. .+..++.++|+++|+++|.|++++++|+||+++++++++|+.+|||+++++
T Consensus 361 ~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~-~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l 439 (449)
T PLN02173 361 MPQWTDQPMNAKYIQDVWKVGVRVKAEK-ESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDINI 439 (449)
T ss_pred cCchhcchHHHHHHHHHhCceEEEeecc-cCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 9999999999999998889999997541 223579999999999999888788999999999999999999999999999
Q ss_pred HHHHHHHH
Q 045281 466 DNLVESFK 473 (481)
Q Consensus 466 ~~l~~~~~ 473 (481)
++|++.++
T Consensus 440 ~~~v~~~~ 447 (449)
T PLN02173 440 NTFVSKIQ 447 (449)
T ss_pred HHHHHHhc
Confidence 99999885
No 7
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.8e-68 Score=535.62 Aligned_cols=448 Identities=27% Similarity=0.469 Sum_probs=345.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCC-CCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSG-LLDTL 80 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~-~~~~~ 80 (481)
+.||+++|||++||++||+.||+.|+.+| +.|||+++..... .+.+.....+++.++.++++..+ .|.+.
T Consensus 9 ~~HVvl~PfpaqGHi~P~l~LAk~La~~G--~~VTfv~T~~n~~-------~~~~~~~~~~~i~~~~lp~P~~~~lPdG~ 79 (477)
T PLN02863 9 GTHVLVFPFPAQGHMIPLLDLTHRLALRG--LTITVLVTPKNLP-------FLNPLLSKHPSIETLVLPFPSHPSIPSGV 79 (477)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCC--CEEEEEeCCCcHH-------HHhhhcccCCCeeEEeCCCCCcCCCCCCC
Confidence 35999999999999999999999999999 9999999654322 22222112346888888765332 23555
Q ss_pred CCCCCh----HHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhh
Q 045281 81 RSPVDL----PALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLP 156 (481)
Q Consensus 81 ~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~ 156 (481)
++..+. ...+........+.+.+++++. ..+++|||+|.+++|+..+| +++|||++.|++++++.++.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--~~~p~cvI~D~f~~Wa~dVA-~e~GIP~~~F~t~sA~~~~~~~~~~ 156 (477)
T PLN02863 80 ENVKDLPPSGFPLMIHALGELYAPLLSWFRSH--PSPPVAIISDMFLGWTQNLA-CQLGIRRFVFSPSGAMALSIMYSLW 156 (477)
T ss_pred cChhhcchhhHHHHHHHHHHhHHHHHHHHHhC--CCCCeEEEEcCchHhHHHHH-HHcCCCEEEEeccCHHHHHHHHHHh
Confidence 544332 2234445555666666666653 13679999999999999999 9999999999999999998888765
Q ss_pred hhccCCCCcccccCC-cccCCCCCCCCCCCcCCCcccC--CCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHc
Q 045281 157 TLHKNTTKSFRELGS-TLLNYPGLPPFPARDMAEPMHD--REGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLE 233 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 233 (481)
...+.....-..... ....+||++.++..+++.++.. ..+.....+.+..+.....+++++|||.+||+.++..+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~ 236 (477)
T PLN02863 157 REMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKK 236 (477)
T ss_pred hcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHh
Confidence 432211000000000 1124788888888888876542 2233444444555555677889999999999999999876
Q ss_pred ccCCCCCCCCCeEeccccCCCCCCC--------CCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC
Q 045281 234 GQCTPGETLPPFYCIGPVVGGGNGE--------NRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERS 305 (481)
Q Consensus 234 ~~~~~~~~~~~~~~vGpl~~~~~~~--------~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 305 (481)
.+ + .++++.|||++...... ..+..+++|.+||+.++++++|||||||+...+.+++++++.+|+.+
T Consensus 237 ~~---~--~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~ 311 (477)
T PLN02863 237 EL---G--HDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKS 311 (477)
T ss_pred hc---C--CCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhC
Confidence 43 1 15799999997532110 00112457999999999999999999999989999999999999999
Q ss_pred CCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEe
Q 045281 306 GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (481)
Q Consensus 306 ~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~ 385 (481)
+++|||+++..... ......+|++|.++.+.+|+++.+|+||.+||+|+++++|||||||||++||+++|||||+
T Consensus 312 ~~~flw~~~~~~~~-----~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~ 386 (477)
T PLN02863 312 GVHFIWCVKEPVNE-----ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLA 386 (477)
T ss_pred CCcEEEEECCCccc-----ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEe
Confidence 99999999853110 0112358899999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Q 045281 386 WPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMD-SEKGRAVKERVVEMKEAAAAAMRDGGSSRVA 464 (481)
Q Consensus 386 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 464 (481)
+|+++||+.||+++++++|+|+.+..+ +.+.++.+++.++|.++|. ++ .||+||+++++++++|+.+|||++++
T Consensus 387 ~P~~~DQ~~na~~v~~~~gvG~~~~~~--~~~~~~~~~v~~~v~~~m~~~~---~~r~~a~~l~e~a~~Av~~gGSS~~~ 461 (477)
T PLN02863 387 WPMAADQFVNASLLVDELKVAVRVCEG--ADTVPDSDELARVFMESVSENQ---VERERAKELRRAALDAIKERGSSVKD 461 (477)
T ss_pred CCccccchhhHHHHHHhhceeEEeccC--CCCCcCHHHHHHHHHHHhhccH---HHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 999999999999988889999999653 3344799999999999994 44 49999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 045281 465 LDNLVESFKRGC 476 (481)
Q Consensus 465 ~~~l~~~~~~~~ 476 (481)
+++|++.+++..
T Consensus 462 l~~~v~~i~~~~ 473 (477)
T PLN02863 462 LDGFVKHVVELG 473 (477)
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 8
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.9e-68 Score=532.22 Aligned_cols=450 Identities=25% Similarity=0.413 Sum_probs=345.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcch--hh-hhc-c-CCCCCeEEEEcCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDD--YI-ASV-S-ATVPSVTFHQLPPPVSGL 76 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~--~i-~~~-~-~~~~~i~~~~~~~~~~~~ 76 (481)
+.||+++|+|++||++||+.||+.|+.+| ..|||+++...... .++ .+ .+. . .....+.|..++.+ +|
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G--~~vT~v~T~~~~~~---~~~a~~~~~~~~~~~~~~~i~~~~~pdg-lp- 79 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKG--LLVTFVTTESWGKK---MRQANKIQDGVLKPVGDGFIRFEFFEDG-WA- 79 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCC--CeEEEEeccchhhh---hhccccccccccccCCCCeEEEeeCCCC-CC-
Confidence 36999999999999999999999999999 99999997643221 110 01 000 0 01123666666542 44
Q ss_pred CCCCCCCCChHHHHHHHHHHhhHHHHHHHHHhhc-cCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHh
Q 045281 77 LDTLRSPVDLPALAYELGELNNPKLHETLITISK-RSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYL 155 (481)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~ 155 (481)
.+.+...++...+........+.++++++++.. ..+++|||+|.+++|+..+| +++|||.++|++++++..+.++++
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA-~~~gIP~~~F~t~~a~~~~~~~~~ 157 (480)
T PLN02555 80 -EDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVA-EELGIPSAVLWVQSCACFSAYYHY 157 (480)
T ss_pred -CCcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHH-HHcCCCeEEeecccHHHHHHHHHH
Confidence 443333244332333333567788888876532 23459999999999999999 999999999999999988887776
Q ss_pred hhhccCCCCccccc--CCcccCCCCCCCCCCCcCCCcccC--CCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHH
Q 045281 156 PTLHKNTTKSFREL--GSTLLNYPGLPPFPARDMAEPMHD--REGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAM 231 (481)
Q Consensus 156 ~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 231 (481)
+... .++... ......+||+|.++..+++.++.. ..+..++.+.+..+...+++++++|||.+||+.++..+
T Consensus 158 ~~~~----~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 233 (480)
T PLN02555 158 YHGL----VPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYM 233 (480)
T ss_pred hhcC----CCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHH
Confidence 3210 111110 112345899998899999986542 22344566667777788899999999999999999888
Q ss_pred HcccCCCCCCCCCeEeccccCCCCCC--C---C-CCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC
Q 045281 232 LEGQCTPGETLPPFYCIGPVVGGGNG--E---N-RGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERS 305 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~vGpl~~~~~~--~---~-~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~ 305 (481)
.+.. | ++.|||+...... . . .++.+++|.+||++++++++|||||||+...+.+++.+++.+|+.+
T Consensus 234 ~~~~-------~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~ 305 (480)
T PLN02555 234 SKLC-------P-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNS 305 (480)
T ss_pred hhCC-------C-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhc
Confidence 6532 4 9999999753211 1 1 1234568999999999889999999999999999999999999999
Q ss_pred CCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEe
Q 045281 306 GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (481)
Q Consensus 306 ~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~ 385 (481)
+++|||+++...... ......+|+++.++.+ +|+.+++|+||.+||.|+++++|||||||||++||+++|||||+
T Consensus 306 ~~~flW~~~~~~~~~----~~~~~~lp~~~~~~~~-~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~ 380 (480)
T PLN02555 306 GVSFLWVMRPPHKDS----GVEPHVLPEEFLEKAG-DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVC 380 (480)
T ss_pred CCeEEEEEecCcccc----cchhhcCChhhhhhcC-CceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEe
Confidence 999999997431100 0012357888988875 45577799999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 045281 386 WPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVAL 465 (481)
Q Consensus 386 ~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 465 (481)
+|+++||+.||+++++.||+|+.+....+..+.++.++|.++|+++|.+++++++|+||++|++++++|+.+|||+++++
T Consensus 381 ~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l 460 (480)
T PLN02555 381 FPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNF 460 (480)
T ss_pred CCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999999988999999953200112489999999999999887789999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 045281 466 DNLVESFKRGCM 477 (481)
Q Consensus 466 ~~l~~~~~~~~~ 477 (481)
++||+.++..++
T Consensus 461 ~~~v~~i~~~~~ 472 (480)
T PLN02555 461 QEFVDKLVRKSV 472 (480)
T ss_pred HHHHHHHHhccc
Confidence 999999998754
No 9
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-68 Score=529.34 Aligned_cols=452 Identities=31% Similarity=0.625 Sum_probs=341.3
Q ss_pred CCc-EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC
Q 045281 1 MKD-TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDT 79 (481)
Q Consensus 1 m~~-~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~ 79 (481)
|.+ ||+++|+|++||++||+.||+.|+.+|+...|||++++...+. ..+..+.+.....++++|+.+|+.... +..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~--~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~~ 77 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQS--HLDTYVKSIASSQPFVRFIDVPELEEK-PTL 77 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcch--hhHHhhhhccCCCCCeEEEEeCCCCCC-Ccc
Confidence 554 9999999999999999999999999874478999997765432 112223322122347999999853221 121
Q ss_pred CCCCCChHHHHHHHHHHhhHHHHHHHHHhhc----c-CCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHH
Q 045281 80 LRSPVDLPALAYELGELNNPKLHETLITISK----R-SNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLY 154 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~-~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~ 154 (481)
....+....+...+....+.+++.++++.+ + .+++|||+|.+++|+..+| +++|||.+.|++++++..+.+.+
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA-~~~gip~~~f~~~~a~~~~~~~~ 155 (468)
T PLN02207 78 -GGTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVA-KDVSLPFYVFLTTNSGFLAMMQY 155 (468)
T ss_pred -ccccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHH-HHhCCCEEEEECccHHHHHHHHH
Confidence 112245555556666664544444444432 1 2349999999999999999 99999999999999988888777
Q ss_pred hhhhccCCC-CcccccCCcccCCCCC-CCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHH
Q 045281 155 LPTLHKNTT-KSFRELGSTLLNYPGL-PPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAML 232 (481)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 232 (481)
++....... ..... ....+.+||+ ++++..+++.++.... . +..+.+......+.+++++||+.+||.+++..+.
T Consensus 156 ~~~~~~~~~~~~~~~-~~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~ 232 (468)
T PLN02207 156 LADRHSKDTSVFVRN-SEEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFL 232 (468)
T ss_pred hhhccccccccCcCC-CCCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHH
Confidence 654322110 00001 0122458998 6789999987663222 1 4455566667788999999999999999988885
Q ss_pred cccCCCCCCCCCeEeccccCCCCCCCC---CCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcE
Q 045281 233 EGQCTPGETLPPFYCIGPVVGGGNGEN---RGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKF 309 (481)
Q Consensus 233 ~~~~~~~~~~~~~~~vGpl~~~~~~~~---~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 309 (481)
+.. ..|+++.|||++....... ....+++|.+||++++++++|||||||+...+.+++++++.+|+.++++|
T Consensus 233 ~~~-----~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~f 307 (468)
T PLN02207 233 DEQ-----NYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRF 307 (468)
T ss_pred hcc-----CCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcE
Confidence 410 1278999999986432110 00123579999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccc
Q 045281 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 310 iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~ 389 (481)
||+++.... ...+.+|++|.+|.+.++ .+++|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 308 lW~~r~~~~-------~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~ 379 (468)
T PLN02207 308 LWSLRTEEV-------TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY 379 (468)
T ss_pred EEEEeCCCc-------cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCcc
Confidence 999985311 113358899999887555 566999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhceeeeeccCc--ccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSE--EEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDN 467 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~--~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (481)
+||+.||+++++.+|+|+.+.... ..++.++.++|+++|+++|.+ +++.||+||++|++++++|+.+|||+++++++
T Consensus 380 ~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~ 458 (468)
T PLN02207 380 AEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEK 458 (468)
T ss_pred ccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999888789999874210 011246999999999999973 25569999999999999999999999999999
Q ss_pred HHHHHHh
Q 045281 468 LVESFKR 474 (481)
Q Consensus 468 l~~~~~~ 474 (481)
|++.++.
T Consensus 459 ~v~~~~~ 465 (468)
T PLN02207 459 FIHDVIG 465 (468)
T ss_pred HHHHHHh
Confidence 9998864
No 10
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.6e-67 Score=522.87 Aligned_cols=430 Identities=23% Similarity=0.380 Sum_probs=333.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRS 82 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (481)
.||+++|+|++||++||+.||+.|+.+| +.|||+++..... .+.+.....++++|+.+|++ .+ .+.
T Consensus 7 ~HVVlvPfPaqGHi~PmL~LAk~Las~G--~~VT~vtt~~~~~-------~~~~~~~~~~~i~~v~lp~g-~~--~~~-- 72 (448)
T PLN02562 7 PKIILVPYPAQGHVTPMLKLASAFLSRG--FEPVVITPEFIHR-------RISATLDPKLGITFMSISDG-QD--DDP-- 72 (448)
T ss_pred cEEEEEcCccccCHHHHHHHHHHHHhCC--CEEEEEeCcchhh-------hhhhccCCCCCEEEEECCCC-CC--CCc--
Confidence 3999999999999999999999999999 9999999654322 12211111247999998754 33 221
Q ss_pred CCChHHHHHHHHH-HhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhccC
Q 045281 83 PVDLPALAYELGE-LNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLHKN 161 (481)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (481)
..++. .+...+. ...+.++++++++....+++|||+|.++.|+..+| +++|||++.|++++++..+.+.+++.....
T Consensus 73 ~~~~~-~l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA-~~~giP~~~f~~~~a~~~~~~~~~~~~~~~ 150 (448)
T PLN02562 73 PRDFF-SIENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVA-DRCGVPVAGFWPVMLAAYRLIQAIPELVRT 150 (448)
T ss_pred cccHH-HHHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHH-HHhCCCEEEEechhHHHHHHHHHHHHHhhc
Confidence 11232 3344444 46777888887763323458999999999999999 999999999999998877776665543222
Q ss_pred CCCcccc--cCCcc-cCCCCCCCCCCCcCCCcccCC--CchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccC
Q 045281 162 TTKSFRE--LGSTL-LNYPGLPPFPARDMAEPMHDR--EGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQC 236 (481)
Q Consensus 162 ~~~~~~~--~~~~~-~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 236 (481)
....... ..... ..+|+++.++..+++.++... ....+..+.+..+...+.+++++|||.+||+..+..+.+..
T Consensus 151 ~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~- 229 (448)
T PLN02562 151 GLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASY- 229 (448)
T ss_pred cccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhh-
Confidence 1100000 00011 247898888888888765432 23345666777777888899999999999998888776543
Q ss_pred CCCCC-CCCeEeccccCCCCCC----CCCCCCcccccccccCCCCCcEEEEecCCCC-CCCHHHHHHHHHHHHhCCCcEE
Q 045281 237 TPGET-LPPFYCIGPVVGGGNG----ENRGRDRHESLSWLDSKPSRSVLLLCFGSLG-SFSCKQLKEMAIGLERSGVKFL 310 (481)
Q Consensus 237 ~~~~~-~~~~~~vGpl~~~~~~----~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i 310 (481)
+++ .|+++.|||++..... ...++.+.+|.+||++++++++|||||||+. ..+.+++++++.+|+.++++||
T Consensus 230 --~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fi 307 (448)
T PLN02562 230 --NNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFI 307 (448)
T ss_pred --ccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEE
Confidence 122 2789999999865421 1101234568899999998899999999986 6789999999999999999999
Q ss_pred EEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccccc
Q 045281 311 WVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (481)
Q Consensus 311 w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~ 390 (481)
|+++.+ ..+.+|++|.++.. +|+.+.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 308 W~~~~~----------~~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 376 (448)
T PLN02562 308 WVLNPV----------WREGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAG 376 (448)
T ss_pred EEEcCC----------chhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCccc
Confidence 999753 12247888888875 5667779999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 045281 391 EQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 391 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (481)
||+.||+++++.+|+|+.+.. ++.++|.++|+++|.|++ ||+||+++++++.++ ++||||++++++|++
T Consensus 377 DQ~~na~~~~~~~g~g~~~~~-------~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~ 445 (448)
T PLN02562 377 DQFVNCAYIVDVWKIGVRISG-------FGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE-EARLRSMMNFTTLKD 445 (448)
T ss_pred chHHHHHHHHHHhCceeEeCC-------CCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Confidence 999999999876899988843 899999999999999887 999999999998876 567999999999999
Q ss_pred HHH
Q 045281 471 SFK 473 (481)
Q Consensus 471 ~~~ 473 (481)
+++
T Consensus 446 ~~~ 448 (448)
T PLN02562 446 ELK 448 (448)
T ss_pred HhC
Confidence 874
No 11
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.1e-66 Score=521.25 Aligned_cols=433 Identities=22% Similarity=0.361 Sum_probs=328.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHH--HHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKL--ILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDT 79 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~--L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~ 79 (481)
+.||+++|+|++||++|++.||++ |++|| ++|||+++..... .+++.......+++..++.. +| .+
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G--~~VT~v~t~~~~~-------~~~~~~~~~~~~~~~~~~~g-lp--~~ 75 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKN--LHFTLATTEQARD-------LLSTVEKPRRPVDLVFFSDG-LP--KD 75 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCC--cEEEEEeccchhh-------hhccccCCCCceEEEECCCC-CC--CC
Confidence 359999999999999999999999 56999 9999999663321 22221112346777776642 44 43
Q ss_pred CCCCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhc
Q 045281 80 LRSPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLH 159 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 159 (481)
.+ .+....+........+.+++++++. +|||||+|.++.|+..+| +++|||.+.|+++++..++.+.+++...
T Consensus 76 ~~--~~~~~~~~~~~~~~~~~l~~~l~~~----~~~~vI~D~~~~w~~~vA-~~lgIP~~~f~~~sa~~~~~~~~~~~~~ 148 (456)
T PLN02210 76 DP--RAPETLLKSLNKVGAKNLSKIIEEK----RYSCIISSPFTPWVPAVA-AAHNIPCAILWIQACGAYSVYYRYYMKT 148 (456)
T ss_pred cc--cCHHHHHHHHHHhhhHHHHHHHhcC----CCcEEEECCcchhHHHHH-HHhCCCEEEEecccHHHHHHHHhhhhcc
Confidence 32 1233322223334555566666553 799999999999999999 9999999999999988887766543211
Q ss_pred cCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHH-HHHhhhhcccEEEEeCchhhhHHHHHHHHcccCCC
Q 045281 160 KNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFV-DTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTP 238 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~ 238 (481)
.. .+..........+|+++.+...+++..+.......+.... +..+...+.+++++|||.+||+..+..+.+ .
T Consensus 149 ~~--~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~--- 222 (456)
T PLN02210 149 NS--FPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L--- 222 (456)
T ss_pred CC--CCcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c---
Confidence 11 1100000122458888888888888765544333333333 333455677899999999999999888765 2
Q ss_pred CCCCCCeEeccccCCCC---CCC---------CCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCC
Q 045281 239 GETLPPFYCIGPVVGGG---NGE---------NRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSG 306 (481)
Q Consensus 239 ~~~~~~~~~vGpl~~~~---~~~---------~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~ 306 (481)
+++++|||++... ... ..|..+.+|.+||++++++++|||||||+...+.+++++++.+|+.++
T Consensus 223 ----~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~ 298 (456)
T PLN02210 223 ----KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRG 298 (456)
T ss_pred ----CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCC
Confidence 6799999997421 110 002335678999999998899999999999889999999999999999
Q ss_pred CcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEec
Q 045281 307 VKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 307 ~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~ 386 (481)
++|||+++... ....+.++.++...++.++++|+||.+||+|+++++|||||||||++|++++|||||++
T Consensus 299 ~~flw~~~~~~----------~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 299 VPFLWVIRPKE----------KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAY 368 (456)
T ss_pred CCEEEEEeCCc----------cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec
Confidence 99999997531 11123456666532334566999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHH
Q 045281 387 PLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALD 466 (481)
Q Consensus 387 P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~ 466 (481)
|+++||+.||+++++.+|+|+.+.... .++.+++++|+++|+++|.+++++++|+||++|++.+++|+.+|||++++++
T Consensus 369 P~~~DQ~~na~~~~~~~g~G~~l~~~~-~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~ 447 (456)
T PLN02210 369 PSWTDQPIDARLLVDVFGIGVRMRNDA-VDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLD 447 (456)
T ss_pred ccccccHHHHHHHHHHhCeEEEEeccc-cCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999987689999997531 1234999999999999998887889999999999999999999999999999
Q ss_pred HHHHHHHh
Q 045281 467 NLVESFKR 474 (481)
Q Consensus 467 ~l~~~~~~ 474 (481)
+|++.++.
T Consensus 448 ~~v~~~~~ 455 (456)
T PLN02210 448 LFISDITI 455 (456)
T ss_pred HHHHHHhc
Confidence 99998863
No 12
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-66 Score=517.82 Aligned_cols=425 Identities=22% Similarity=0.353 Sum_probs=326.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCC-CCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVS-GLLDTL 80 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~-~~~~~~ 80 (481)
|.||+++|||++||++|++.||+.|+++| |+|||+++..... .+.+......++.+..++.+.. ..|.+.
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G--~~VT~vtt~~~~~-------~i~~~~a~~~~i~~~~l~~p~~dgLp~g~ 74 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKG--HRVTFLLPKKAQK-------QLEHHNLFPDSIVFHPLTIPPVNGLPAGA 74 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCC--CEEEEEeccchhh-------hhhcccCCCCceEEEEeCCCCccCCCCCc
Confidence 35999999999999999999999999999 9999999653222 2322211123577777655311 112444
Q ss_pred CCCCChH----HHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhh
Q 045281 81 RSPVDLP----ALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLP 156 (481)
Q Consensus 81 ~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~ 156 (481)
++..+.. ..+........+.++++++++ ++||||+| ++.|+..+| +++|||++.|++++++..+ +.+++
T Consensus 75 ~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~----~~~cVV~D-~~~wa~~vA-~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 75 ETTSDIPISMDNLLSEALDLTRDQVEAAVRAL----RPDLIFFD-FAQWIPEMA-KEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEC-CcHhHHHHH-HHhCCCEEEEEhhhHHHHH-HHccC
Confidence 4332222 223444555666677777665 89999999 589999999 9999999999999988654 43332
Q ss_pred hhccCCCCcccccCCcccCCCCCCC----CCCCcCCCcccCCCchhHHHHHHH-HhhhhcccEEEEeCchhhhHHHHHHH
Q 045281 157 TLHKNTTKSFRELGSTLLNYPGLPP----FPARDMAEPMHDREGKAYKGFVDT-GIQMAKSAGLIVNTFELLEERAIKAM 231 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~ 231 (481)
. .. . ...+|++|. ++..+++.+ ......+..+.+. .+...+.+++++|||.+||+.+++++
T Consensus 148 ~--~~--~--------~~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~ 213 (442)
T PLN02208 148 G--GK--L--------GVPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYI 213 (442)
T ss_pred c--cc--c--------CCCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHH
Confidence 1 00 0 012466654 344555542 2222334444433 34567889999999999999999888
Q ss_pred HcccCCCCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 045281 232 LEGQCTPGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLW 311 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw 311 (481)
.... + |++++|||++....... +.+.+|.+|||+++++++|||||||+...+.+++.+++.+++.++.+|+|
T Consensus 214 ~~~~---~---~~v~~vGpl~~~~~~~~--~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~w 285 (442)
T PLN02208 214 SRQY---H---KKVLLTGPMFPEPDTSK--PLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLI 285 (442)
T ss_pred Hhhc---C---CCEEEEeecccCcCCCC--CCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEE
Confidence 6532 1 78999999986533111 45678999999999899999999999988999999999999999999999
Q ss_pred EEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccc
Q 045281 312 VVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAE 391 (481)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~D 391 (481)
+++.+... ....+.+|++|.+|.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 286 v~r~~~~~-----~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~D 360 (442)
T PLN02208 286 AVKPPRGS-----STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSD 360 (442)
T ss_pred EEeCCCcc-----cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchh
Confidence 99853111 0122458999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 045281 392 QKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSE--KGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 392 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (481)
|+.||+++++.+|+|+.++.. +++.++.++|+++|+++|.++ +++++|++|+++++.+. ++||+++++++|+
T Consensus 361 Q~~na~~~~~~~g~gv~~~~~--~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v 434 (442)
T PLN02208 361 QVLFTRLMTEEFEVSVEVSRE--KTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFV 434 (442)
T ss_pred hHHHHHHHHHHhceeEEeccc--cCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHH
Confidence 999999987778999999864 334689999999999999864 38899999999999985 3789999999999
Q ss_pred HHHHhh
Q 045281 470 ESFKRG 475 (481)
Q Consensus 470 ~~~~~~ 475 (481)
+.+++.
T Consensus 435 ~~l~~~ 440 (442)
T PLN02208 435 EELQEY 440 (442)
T ss_pred HHHHHh
Confidence 999765
No 13
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-66 Score=521.30 Aligned_cols=449 Identities=29% Similarity=0.484 Sum_probs=335.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCC--CCCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVS--GLLDTL 80 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~--~~~~~~ 80 (481)
.||+++|||++||++||+.||+.|+.+| +.|||+++... .. .....+.........++|+.+|++.. ..|.+.
T Consensus 9 ~Hvv~vPfpaqGHi~P~l~LAk~La~~G--~~vT~v~t~~n--~~-~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~ 83 (491)
T PLN02534 9 LHFVLIPLMAQGHMIPMIDMARLLAERG--VIVSLVTTPQN--AS-RFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGC 83 (491)
T ss_pred CEEEEECCCCcchHHHHHHHHHHHHhCC--CeEEEEECCCc--HH-HHhhhhhhccccCCCeEEEEcCCCCccCCCCCCc
Confidence 4999999999999999999999999999 99999996532 21 11211211000112499999986521 122444
Q ss_pred CCCCC-----hHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHh
Q 045281 81 RSPVD-----LPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYL 155 (481)
Q Consensus 81 ~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~ 155 (481)
++..+ +...+...+....+.+++++++. ..+++|||+|.+++|+..+| +++|||.+.|++++++..+..+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~--~~pp~cIV~D~f~~Wa~dVA-~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 84 ENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA--KPPPSCIISDKCLSWTSKTA-QRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred cccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc--CCCCcEEEECCccHHHHHHH-HHhCCCeEEEecchHHHHHHHHHH
Confidence 43322 22233344445556666666543 24689999999999999999 999999999999999887765544
Q ss_pred hhhccCCCCcccccCCcccCCCCCCC---CCCCcCCCcccCCCchhHHHHHHHHhh-hhcccEEEEeCchhhhHHHHHHH
Q 045281 156 PTLHKNTTKSFRELGSTLLNYPGLPP---FPARDMAEPMHDREGKAYKGFVDTGIQ-MAKSAGLIVNTFELLEERAIKAM 231 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~ 231 (481)
....+.. .... ....+.+|+++. ++..+++..+.... ....+.+.+.. ....+++++|||.+||+.+++.+
T Consensus 161 ~~~~~~~--~~~~-~~~~~~iPg~p~~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l 235 (491)
T PLN02534 161 RLHNAHL--SVSS-DSEPFVVPGMPQSIEITRAQLPGAFVSLP--DLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAY 235 (491)
T ss_pred HHhcccc--cCCC-CCceeecCCCCccccccHHHCChhhcCcc--cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHH
Confidence 3222211 1111 112345788774 66677776443221 12333333332 34567999999999999999998
Q ss_pred HcccCCCCCCCCCeEeccccCCCCCC-------CCCC-CCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHH
Q 045281 232 LEGQCTPGETLPPFYCIGPVVGGGNG-------ENRG-RDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLE 303 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~vGpl~~~~~~-------~~~~-~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~ 303 (481)
.+.. + ++++.|||++..... .... ..+++|.+||++++++++|||||||......+++.+++.+|+
T Consensus 236 ~~~~---~---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~ 309 (491)
T PLN02534 236 EKAI---K---KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLE 309 (491)
T ss_pred Hhhc---C---CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 7643 1 579999999753211 0000 123569999999999999999999999999999999999999
Q ss_pred hCCCcEEEEEeCCCCCCccccccccc-cCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCc
Q 045281 304 RSGVKFLWVVRAPAPDSVENRSSLES-LLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVP 382 (481)
Q Consensus 304 ~~~~~~iw~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP 382 (481)
.++.+|||+++.+... .+... .+|++|.++.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||
T Consensus 310 ~~~~~flW~~r~~~~~-----~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP 384 (491)
T PLN02534 310 ASKKPFIWVIKTGEKH-----SELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVP 384 (491)
T ss_pred hCCCCEEEEEecCccc-----cchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCC
Confidence 9999999999853110 01112 36899999988899999999999999999999999999999999999999999
Q ss_pred EEecccccchhhHHHHHHHhhceeeeeccCc-----cc---ccccCHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHH
Q 045281 383 MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE-----EE---ERLVSAAELEQRVSELMD--SEKGRAVKERVVEMKEAAA 452 (481)
Q Consensus 383 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~-----~~---~~~~~~~~l~~av~~il~--~~~~~~~~~~a~~l~~~~~ 452 (481)
||++|++.||+.||+++++.||+|+.+.... .+ +..++.++|+++|+++|. +++++.+|+||++|+++++
T Consensus 385 ~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~ 464 (491)
T PLN02534 385 MITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMAR 464 (491)
T ss_pred EEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999885210 01 125899999999999997 4557889999999999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHhh
Q 045281 453 AAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 453 ~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
+|+.+||||++++++||+.+++.
T Consensus 465 ~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 465 KAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999754
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1e-66 Score=526.90 Aligned_cols=456 Identities=37% Similarity=0.633 Sum_probs=340.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccC-CCCCeEEEEcCCCCCCCCCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSA-TVPSVTFHQLPPPVSGLLDT 79 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~-~~~~i~~~~~~~~~~~~~~~ 79 (481)
||.||+++|+|++||++||+.||+.|+.+|.+..|||+++....+.....+..+.+... ..++++|+.+|++..+ ..
T Consensus 1 ~~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~--~~ 78 (481)
T PLN02554 1 MKIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP--TT 78 (481)
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC--cc
Confidence 89999999999999999999999999999733679999865432210000111222111 1346999999866321 11
Q ss_pred CCCCCChHHHHHHHHHHhhHHHHHHHHHhhcc------CCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHH
Q 045281 80 LRSPVDLPALAYELGELNNPKLHETLITISKR------SNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALL 153 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~ 153 (481)
. .. .+..++....+.+++.++++.+. .+.+|||+|.+++|+..+| +++|||++.|++++++.++.+.
T Consensus 79 -~---~~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA-~~lgIP~~~F~t~sa~~~~~~~ 151 (481)
T PLN02554 79 -E---DP--TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVA-NEFGVPSYMFYTSNATFLGLQL 151 (481)
T ss_pred -c---ch--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHH-HHhCCCEEEEeCCcHHHHHHHH
Confidence 1 11 34445555566666666665421 2248999999999999999 9999999999999999998888
Q ss_pred HhhhhccCCCCcccc--cCCcccCCCCCC-CCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHH
Q 045281 154 YLPTLHKNTTKSFRE--LGSTLLNYPGLP-PFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKA 230 (481)
Q Consensus 154 ~~~~~~~~~~~~~~~--~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 230 (481)
+++........++.+ .......+|+++ +++..+++..+..+ ..+..+.+..+.+.+.+++++||+.+||......
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~ 229 (481)
T PLN02554 152 HVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKF 229 (481)
T ss_pred hhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHH
Confidence 776543221111111 011234588884 77888887655432 3455566777778889999999999999999988
Q ss_pred HHcccCCCCCCCCCeEeccccCCCCCCCCC--CCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCc
Q 045281 231 MLEGQCTPGETLPPFYCIGPVVGGGNGENR--GRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVK 308 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~--~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~ 308 (481)
+.+... ..|++++|||++........ .+.+.+|.+||++++++++|||||||+...+.+++++++.+|+.++++
T Consensus 230 l~~~~~----~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~ 305 (481)
T PLN02554 230 FSGSSG----DLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHR 305 (481)
T ss_pred HHhccc----CCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCC
Confidence 876310 12789999999432221110 134568999999999889999999999988999999999999999999
Q ss_pred EEEEEeCCCCCCc---cc-cccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEE
Q 045281 309 FLWVVRAPAPDSV---EN-RSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPML 384 (481)
Q Consensus 309 ~iw~~~~~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v 384 (481)
|||+++....... .+ ..+....+|++|.+|.+.+ +++.+|+||.+||.|+++++|||||||||++||+++|||||
T Consensus 306 flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~-g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l 384 (481)
T PLN02554 306 FLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDI-GKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMA 384 (481)
T ss_pred eEEEEcCCcccccccccccccchhhhCChHHHHHhccC-ceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEE
Confidence 9999975311000 00 0011223688999888654 46669999999999999999999999999999999999999
Q ss_pred ecccccchhhHHHHHHHhhceeeeeccCcc------cccccCHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHhc
Q 045281 385 AWPLYAEQKMIKAVVVEEMKVGLAVTRSEE------EERLVSAAELEQRVSELMD-SEKGRAVKERVVEMKEAAAAAMRD 457 (481)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~------~~~~~~~~~l~~av~~il~-~~~~~~~~~~a~~l~~~~~~~~~~ 457 (481)
++|+++||+.||+++++++|+|+.+..+.. +++.++.++|+++|+++|. |++ ||+||+++++.+++|+.+
T Consensus 385 ~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~---~r~~a~~l~~~~~~av~~ 461 (481)
T PLN02554 385 AWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSD---VRKRVKEMSEKCHVALMD 461 (481)
T ss_pred ecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcC
Confidence 999999999999665578899999964100 1124899999999999996 555 999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHhh
Q 045281 458 GGSSRVALDNLVESFKRG 475 (481)
Q Consensus 458 ~g~~~~~~~~l~~~~~~~ 475 (481)
|||+++++++|++.+++-
T Consensus 462 gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 462 GGSSHTALKKFIQDVTKN 479 (481)
T ss_pred CChHHHHHHHHHHHHHhh
Confidence 999999999999998763
No 15
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.7e-66 Score=516.05 Aligned_cols=436 Identities=23% Similarity=0.394 Sum_probs=334.9
Q ss_pred CCc-EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCC
Q 045281 1 MKD-TIVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLD 78 (481)
Q Consensus 1 m~~-~il~~~~~~~GH~~P~l~La~~L~~-~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~ 78 (481)
|.+ ||+++|+|++||++||+.||+.|+. +| +.|||+++.....+. .+.+. ...+++.|+.++.+ +| .
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G--~~vT~v~t~~~~~~~-----~~~~~-~~~~~i~~~~i~dg-lp--~ 69 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTG--TRVTFATCLSVIHRS-----MIPNH-NNVENLSFLTFSDG-FD--D 69 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCC--cEEEEEeccchhhhh-----hhccC-CCCCCEEEEEcCCC-CC--C
Confidence 554 9999999999999999999999996 79 999999965311111 11111 11246999999743 54 4
Q ss_pred CCCC-CCChHHHHHHHHHHhhHHHHHHHHHhhcc-CCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhh
Q 045281 79 TLRS-PVDLPALAYELGELNNPKLHETLITISKR-SNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLP 156 (481)
Q Consensus 79 ~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~ 156 (481)
+.+. ..+....+........+.+.++++++... .+++|||+|.+++|+..+| +++|||.+.|++++++.++.+++++
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA-~~lgIP~~~f~t~~a~~~~~~~~~~ 148 (455)
T PLN02152 70 GVISNTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVA-RRFHLPSVLLWIQPAFVFDIYYNYS 148 (455)
T ss_pred ccccccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHH-HHhCCCEEEEECccHHHHHHHHHhh
Confidence 4322 33444455556666778888888876432 4569999999999999999 9999999999999999888877654
Q ss_pred hhccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCC--CchhHHHHHHHHhhhhc--ccEEEEeCchhhhHHHHHHHH
Q 045281 157 TLHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDR--EGKAYKGFVDTGIQMAK--SAGLIVNTFELLEERAIKAML 232 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~l~~s~~~le~~~~~~~~ 232 (481)
... .....+||+++++..+++.++... .....+.+.+..+...+ .+++++|||.+||+..+..+.
T Consensus 149 ~~~-----------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~ 217 (455)
T PLN02152 149 TGN-----------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIP 217 (455)
T ss_pred ccC-----------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhh
Confidence 211 112348899888889998866432 22234445555554433 469999999999999988874
Q ss_pred cccCCCCCCCCCeEeccccCCCCC--CC---C--C-CCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHh
Q 045281 233 EGQCTPGETLPPFYCIGPVVGGGN--GE---N--R-GRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLER 304 (481)
Q Consensus 233 ~~~~~~~~~~~~~~~vGpl~~~~~--~~---~--~-~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~ 304 (481)
+ .+++.|||+..... .. . . ++.+.+|.+||++++++++|||||||+...+.+++++++.+|+.
T Consensus 218 ~---------~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~ 288 (455)
T PLN02152 218 N---------IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIE 288 (455)
T ss_pred c---------CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHH
Confidence 3 35999999975321 10 0 0 12245799999999988999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCCCCccccccc--cccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCc
Q 045281 305 SGVKFLWVVRAPAPDSVENRSSL--ESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVP 382 (481)
Q Consensus 305 ~~~~~iw~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP 382 (481)
++.+|||+++.+.......+.+. ...+|++|.++.+..+ .+.+|+||.+||+|+++++|||||||||++|++++|||
T Consensus 289 s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP 367 (455)
T PLN02152 289 GKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVP 367 (455)
T ss_pred cCCCeEEEEecCcccccccccccccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCC
Confidence 99999999985311100000000 1124688988876544 66699999999999999999999999999999999999
Q ss_pred EEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 045281 383 MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSR 462 (481)
Q Consensus 383 ~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 462 (481)
+|++|+++||+.||+++++.||+|+.+..+ +++.++.++|+++|+++|.|+ +++||+||++|++.+++++.+|||++
T Consensus 368 ~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~--~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~ 444 (455)
T PLN02152 368 VVAFPMWSDQPANAKLLEEIWKTGVRVREN--SEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSD 444 (455)
T ss_pred EEeccccccchHHHHHHHHHhCceEEeecC--cCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence 999999999999999998877888887643 323479999999999999754 56799999999999999999999999
Q ss_pred HHHHHHHHHH
Q 045281 463 VALDNLVESF 472 (481)
Q Consensus 463 ~~~~~l~~~~ 472 (481)
+++++|++.+
T Consensus 445 ~nl~~li~~i 454 (455)
T PLN02152 445 KNVEAFVKTL 454 (455)
T ss_pred HHHHHHHHHh
Confidence 9999999976
No 16
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=6.1e-66 Score=520.43 Aligned_cols=454 Identities=33% Similarity=0.629 Sum_probs=336.8
Q ss_pred CC-cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeE---EEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCC
Q 045281 1 MK-DTIVLYTSPGRGHLNSMVELGKLILTYHPCFS---IDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGL 76 (481)
Q Consensus 1 m~-~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~---Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~ 76 (481)
|| .||+++|||++||++||+.||+.|+.+| .. ||++++....+. ..+..+.+.....++|+|+.+|++..+
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G--~~~t~vt~~~t~~~~~~--~~~~~~~~~~~~~~~i~~~~lp~~~~p- 75 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLD--RRIHTITILYWSLPFAP--QADAFLKSLIASEPRIRLVTLPEVQDP- 75 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCC--CCeEEEEEEECCCCcch--hhhHHHhhcccCCCCeEEEECCCCCCC-
Confidence 44 4999999999999999999999999998 54 455554332221 111122222122347999999876322
Q ss_pred CCCCCC-CCChHHHHHHHHHHhhHHHHHHHHHhhcc-----C-CccEEEECCCCchhHHHHhhccCCCeEEEecccHHHH
Q 045281 77 LDTLRS-PVDLPALAYELGELNNPKLHETLITISKR-----S-NLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGL 149 (481)
Q Consensus 77 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~-~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~ 149 (481)
.+.+. .......+......+.+.+++.++++..+ . +++|||+|.+++|+..+| +++|||.+.|++++++.+
T Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA-~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 76 -PPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVG-NEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred -ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHH-HHhCCCEEEEECccHHHH
Confidence 22111 11222344555566677777777765421 1 459999999999999999 999999999999999888
Q ss_pred HHHHHhhhhccCCCCcccc-cCCcccCCCCC-CCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHH
Q 045281 150 AALLYLPTLHKNTTKSFRE-LGSTLLNYPGL-PPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERA 227 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 227 (481)
+.+++++.........+.. .......+||+ +.++..+++..+.+.. .+..+.+..+...+.+++++|||.+||+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~ 231 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNA 231 (475)
T ss_pred HHHHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHH
Confidence 8877665432111101100 00122448888 4677888876544321 234455666677889999999999999999
Q ss_pred HHHHHcccCCCCCCCCCeEeccccCCCCCCC--CC-CCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHh
Q 045281 228 IKAMLEGQCTPGETLPPFYCIGPVVGGGNGE--NR-GRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLER 304 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~--~~-~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~ 304 (481)
+.++.+.. +.+|++++|||++...... .. ...+.+|.+||++++++++|||||||+...+.+++.+++.+|+.
T Consensus 232 ~~~l~~~~----~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~ 307 (475)
T PLN02167 232 FDYFSRLP----ENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALEL 307 (475)
T ss_pred HHHHHhhc----ccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHh
Confidence 98886531 1127899999997643211 00 01235799999999999999999999988899999999999999
Q ss_pred CCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEE
Q 045281 305 SGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPML 384 (481)
Q Consensus 305 ~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v 384 (481)
++++|||+++.+... .......+|++|.+|++.++ ++++|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 308 ~~~~flw~~~~~~~~----~~~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l 382 (475)
T PLN02167 308 VGCRFLWSIRTNPAE----YASPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIA 382 (475)
T ss_pred CCCcEEEEEecCccc----ccchhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEE
Confidence 999999999853110 00112358899999998776 4559999999999999999999999999999999999999
Q ss_pred ecccccchhhHHHHHHHhhceeeeeccCc--ccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHH
Q 045281 385 AWPLYAEQKMIKAVVVEEMKVGLAVTRSE--EEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSR 462 (481)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~--~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~ 462 (481)
++|+++||+.||+++++++|+|+.+.... .+++.+++++|+++|+++|.+++ .||++|+++++.+++++.+|||++
T Consensus 383 ~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~~av~~gGsS~ 460 (475)
T PLN02167 383 TWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAARKAVMDGGSSF 460 (475)
T ss_pred eccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999987657889999986420 01134799999999999997652 499999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 045281 463 VALDNLVESFKR 474 (481)
Q Consensus 463 ~~~~~l~~~~~~ 474 (481)
+++++||+.++.
T Consensus 461 ~~l~~~v~~i~~ 472 (475)
T PLN02167 461 VAVKRFIDDLLG 472 (475)
T ss_pred HHHHHHHHHHHh
Confidence 999999999875
No 17
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.8e-66 Score=512.35 Aligned_cols=429 Identities=22% Similarity=0.328 Sum_probs=321.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCC-CCCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSG-LLDT 79 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~-~~~~ 79 (481)
+++||+++|+|++||++||+.||+.|+++| ++|||+++..... .++......+++.|..++.+..+ .|.+
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G--~~VT~vtt~~~~~-------~i~~~~~~~~~i~~~~i~lP~~dGLP~g 73 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKG--HRVTFFLPKKAHK-------QLQPLNLFPDSIVFEPLTLPPVDGLPFG 73 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCC--CEEEEEeCCchhh-------hhcccccCCCceEEEEecCCCcCCCCCc
Confidence 356999999999999999999999999999 9999999653221 22221111235888777644211 1244
Q ss_pred CCCCCCh----HHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHh
Q 045281 80 LRSPVDL----PALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYL 155 (481)
Q Consensus 80 ~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~ 155 (481)
.++..++ ...+........+.++++++. .+|||||+|. ++|+..+| +++|||++.|++++++..+.+.+.
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~~l~~~L~~----~~p~cVV~D~-~~wa~~vA-~~lgIP~~~F~~~~a~~~~~~~~~ 147 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRDQIEAKVRA----LKPDLIFFDF-VHWVPEMA-KEFGIKSVNYQIISAACVAMVLAP 147 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCCeEEEECC-chhHHHHH-HHhCCCEEEEecHHHHHHHHHhCc
Confidence 3333232 222334444445555555544 3789999995 89999999 999999999999999888776541
Q ss_pred hhhccCCCCcccccCCcccCCCCCCC----CCCCcC--CCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHH
Q 045281 156 PTLHKNTTKSFRELGSTLLNYPGLPP----FPARDM--AEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIK 229 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 229 (481)
. ... . ..+|++|. ++..+. +.++ .. ....+.+..+...+.+++++|||.+||+.+++
T Consensus 148 ~---~~~--------~--~~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 210 (446)
T PLN00414 148 R---AEL--------G--FPPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCD 210 (446)
T ss_pred H---hhc--------C--CCCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHH
Confidence 1 000 0 11345442 222211 1211 11 12344455566778899999999999999999
Q ss_pred HHHcccCCCCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcE
Q 045281 230 AMLEGQCTPGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKF 309 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 309 (481)
.+.+.. + ++++.|||+............+.+|.+|||+++++|||||||||+.....+++.+++.+|+.++.+|
T Consensus 211 ~~~~~~---~---~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~F 284 (446)
T PLN00414 211 FIERQC---Q---RKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPF 284 (446)
T ss_pred HHHHhc---C---CCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCe
Confidence 887642 1 4799999997533211000223579999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccc
Q 045281 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 310 iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~ 389 (481)
+|++..+... .+..+.+|++|.+|.+.+++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 285 lwvvr~~~~~-----~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~ 359 (446)
T PLN00414 285 LIAVMPPKGS-----STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQL 359 (446)
T ss_pred EEEEecCCCc-----ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcc
Confidence 9999863211 01234689999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSE--KGRAVKERVVEMKEAAAAAMRDGGSSRVALDN 467 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (481)
.||+.||+++++++|+|+.+... +++.+++++|+++|+++|.++ .++++|++|+++++.+. ++||++ ..+++
T Consensus 360 ~dQ~~na~~~~~~~g~g~~~~~~--~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~---~~gg~s-s~l~~ 433 (446)
T PLN00414 360 ADQVLITRLLTEELEVSVKVQRE--DSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV---SPGLLS-GYADK 433 (446)
T ss_pred cchHHHHHHHHHHhCeEEEeccc--cCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH---cCCCcH-HHHHH
Confidence 99999999998788999999753 223589999999999999864 37889999999999874 467744 34899
Q ss_pred HHHHHHhhccC
Q 045281 468 LVESFKRGCMA 478 (481)
Q Consensus 468 l~~~~~~~~~~ 478 (481)
|++++++...+
T Consensus 434 ~v~~~~~~~~~ 444 (446)
T PLN00414 434 FVEALENEVNN 444 (446)
T ss_pred HHHHHHHhccc
Confidence 99999877543
No 18
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-65 Score=516.78 Aligned_cols=436 Identities=30% Similarity=0.476 Sum_probs=337.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTY--HPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDT 79 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~--G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~ 79 (481)
+.||+++|+|++||++||+.||++|+++ | |+|||+++....+ .+++.. ..+++.|+.+++. .| .+
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G--~~VT~~~t~~~~~-------~i~~~~-~~~gi~fv~lp~~-~p--~~ 76 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPD--ILITFVVTEEWLG-------LIGSDP-KPDNIRFATIPNV-IP--SE 76 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCC--cEEEEEeCCchHh-------HhhccC-CCCCEEEEECCCC-CC--Cc
Confidence 4599999999999999999999999999 9 9999999764322 233211 1247999999853 33 33
Q ss_pred CCCCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhc
Q 045281 80 LRSPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLH 159 (481)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 159 (481)
.+...+....+........+.++++++++. .++||||+|.++.|+..+| +++|||++.++++++..++.+.+++...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~VI~D~~~~wa~~vA-~~lgIP~v~f~~~~a~~~~~~~~~~~~~ 153 (459)
T PLN02448 77 LVRAADFPGFLEAVMTKMEAPFEQLLDRLE--PPVTAIVADTYLFWAVGVG-NRRNIPVASLWTMSATFFSVFYHFDLLP 153 (459)
T ss_pred cccccCHHHHHHHHHHHhHHHHHHHHHhcC--CCcEEEEECCccHHHHHHH-HHhCCCeEEEEhHHHHHHHHHHHhhhhh
Confidence 332224443333334456667777776653 3689999999999999999 9999999999999998888777665443
Q ss_pred cCCCCccccc--CCc-ccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccC
Q 045281 160 KNTTKSFREL--GST-LLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQC 236 (481)
Q Consensus 160 ~~~~~~~~~~--~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~ 236 (481)
.....+.... ... ...+|+++++...+++.++.......++.+.+.+....+.+++++|||.+||+.+++.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~- 232 (459)
T PLN02448 154 QNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKF- 232 (459)
T ss_pred hccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhc-
Confidence 2211111110 011 123788888888888876554444446666777777777889999999999999998887654
Q ss_pred CCCCCCCCeEeccccCCCCCC---CCC--C-CCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEE
Q 045281 237 TPGETLPPFYCIGPVVGGGNG---ENR--G-RDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFL 310 (481)
Q Consensus 237 ~~~~~~~~~~~vGpl~~~~~~---~~~--~-~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i 310 (481)
+ +++++|||+...... ... . +.+.+|.+||+.++++++|||||||+...+.+++++++++|+.++++||
T Consensus 233 --~---~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~l 307 (459)
T PLN02448 233 --P---FPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFL 307 (459)
T ss_pred --C---CceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEE
Confidence 1 479999999753211 000 0 1224789999999989999999999988889999999999999999999
Q ss_pred EEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccccc
Q 045281 311 WVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (481)
Q Consensus 311 w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~ 390 (481)
|+++.. ..++.++.. .|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 308 w~~~~~---------------~~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~ 371 (459)
T PLN02448 308 WVARGE---------------ASRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFW 371 (459)
T ss_pred EEEcCc---------------hhhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccc
Confidence 988642 123433332 4677779999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 045281 391 EQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSE--KGRAVKERVVEMKEAAAAAMRDGGSSRVALDNL 468 (481)
Q Consensus 391 DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l 468 (481)
||+.||+++++.||+|+.+.....+.+.+++++|+++|+++|.++ +++.||+||++|++++++++.+|||+++++++|
T Consensus 372 DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~ 451 (459)
T PLN02448 372 DQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAF 451 (459)
T ss_pred cchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999999877899999863200113489999999999999863 478899999999999999999999999999999
Q ss_pred HHHHHhh
Q 045281 469 VESFKRG 475 (481)
Q Consensus 469 ~~~~~~~ 475 (481)
++.+++.
T Consensus 452 v~~~~~~ 458 (459)
T PLN02448 452 IRDISQG 458 (459)
T ss_pred HHHHhcc
Confidence 9999865
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.4e-65 Score=506.89 Aligned_cols=430 Identities=21% Similarity=0.342 Sum_probs=325.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLR 81 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (481)
|.||+++|||++||++||+.||+.|+.+| +.|||+++.. +.. ..+. +. .....-.+.+..+|.++ ..|.+.+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g--~~vT~~tt~~--~~~-~~~~-~~-~~~~~~~v~~~~~p~~~-glp~g~e 76 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKG--HTVTFLLPKK--ALK-QLEH-LN-LFPHNIVFRSVTVPHVD-GLPVGTE 76 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCC--CEEEEEeCcc--hhh-hhcc-cc-cCCCCceEEEEECCCcC-CCCCccc
Confidence 46999999999999999999999999999 9999999654 322 1111 10 00000125566666321 1124444
Q ss_pred CCCChH----HHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhh
Q 045281 82 SPVDLP----ALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPT 157 (481)
Q Consensus 82 ~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~ 157 (481)
+..+.. ..+...+....+.+.+++++. ++||||+|. +.|+..+| +++|||.+.|++++++.++.+.. +
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~----~~~~iV~D~-~~w~~~vA-~~~gIP~~~f~~~~a~~~~~~~~-~- 148 (453)
T PLN02764 77 TVSEIPVTSADLLMSAMDLTRDQVEVVVRAV----EPDLIFFDF-AHWIPEVA-RDFGLKTVKYVVVSASTIASMLV-P- 148 (453)
T ss_pred ccccCChhHHHHHHHHHHHhHHHHHHHHHhC----CCCEEEECC-chhHHHHH-HHhCCCEEEEEcHHHHHHHHHhc-c-
Confidence 332222 234444445566677777664 789999995 89999999 99999999999999987777542 1
Q ss_pred hccCCCCcccccCCcccCCCCCCC----CCCCcCCCccc-CC--CchhHHHHH-HHHhhhhcccEEEEeCchhhhHHHHH
Q 045281 158 LHKNTTKSFRELGSTLLNYPGLPP----FPARDMAEPMH-DR--EGKAYKGFV-DTGIQMAKSAGLIVNTFELLEERAIK 229 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~-~~--~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~ 229 (481)
.... ...+|++|. ++..+++.+.. .. .......+. +..+...+.+++++|||.+||+.+++
T Consensus 149 ---~~~~--------~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~ 217 (453)
T PLN02764 149 ---GGEL--------GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCD 217 (453)
T ss_pred ---cccC--------CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHH
Confidence 1000 012366652 44555554211 11 111222333 33366778889999999999999999
Q ss_pred HHHcccCCCCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcE
Q 045281 230 AMLEGQCTPGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKF 309 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 309 (481)
++.+.. + ++++.|||++....... ..+.+|.+|||+++++|+|||||||+...+.+++.+++.+|+.++.+|
T Consensus 218 ~~~~~~---~---~~v~~VGPL~~~~~~~~--~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pf 289 (453)
T PLN02764 218 YIEKHC---R---KKVLLTGPVFPEPDKTR--ELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPF 289 (453)
T ss_pred HHHhhc---C---CcEEEeccCccCccccc--cchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCe
Confidence 987632 1 57999999975431111 235689999999999999999999999899999999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccc
Q 045281 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 310 iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~ 389 (481)
+|+++.+... .+..+.+|++|++|.+++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 290 lwv~r~~~~~-----~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~ 364 (453)
T PLN02764 290 LVAVKPPRGS-----STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQL 364 (453)
T ss_pred EEEEeCCCCC-----cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcc
Confidence 9999853211 01234689999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSE--KGRAVKERVVEMKEAAAAAMRDGGSSRVALDN 467 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~ 467 (481)
.||+.||+++++.+|+|+.+... +.+.++.++|+++|+++|.++ +++++|++|++++++++ ++||+++++++
T Consensus 365 ~DQ~~na~~l~~~~g~gv~~~~~--~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~ 438 (453)
T PLN02764 365 GDQVLNTRLLSDELKVSVEVARE--ETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDN 438 (453)
T ss_pred cchHHHHHHHHHHhceEEEeccc--cCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHH
Confidence 99999999997778999998542 112389999999999999873 47889999999999986 48999999999
Q ss_pred HHHHHHhhcc
Q 045281 468 LVESFKRGCM 477 (481)
Q Consensus 468 l~~~~~~~~~ 477 (481)
|++.++++..
T Consensus 439 lv~~~~~~~~ 448 (453)
T PLN02764 439 FIESLQDLVS 448 (453)
T ss_pred HHHHHHHhcc
Confidence 9999998753
No 20
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-65 Score=511.56 Aligned_cols=442 Identities=24% Similarity=0.389 Sum_probs=331.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccC-CCCCeEEEEcCCCCCC-CCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSA-TVPSVTFHQLPPPVSG-LLDTL 80 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~-~~~~i~~~~~~~~~~~-~~~~~ 80 (481)
.||+++|||++||++||+.||+.|+.+| +.|||+++...... +.+... ..++++++.++++..+ .|.+.
T Consensus 7 ~HVvl~P~paqGHi~P~l~LAk~La~~G--~~vT~v~t~~n~~~-------~~~~~~~~~~~i~~~~lp~p~~dglp~~~ 77 (472)
T PLN02670 7 LHVAMFPWLAMGHLIPFLRLSKLLAQKG--HKISFISTPRNLHR-------LPKIPSQLSSSITLVSFPLPSVPGLPSSA 77 (472)
T ss_pred cEEEEeCChhhhHHHHHHHHHHHHHhCC--CEEEEEeCCchHHh-------hhhccccCCCCeeEEECCCCccCCCCCCc
Confidence 4999999999999999999999999999 99999996532211 111111 1246999999865432 22444
Q ss_pred CCCCChH----HHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhh
Q 045281 81 RSPVDLP----ALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLP 156 (481)
Q Consensus 81 ~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~ 156 (481)
++..+.. ..+....+...+.+++++++. +++|||+|.++.|+..+| +++|||++.|++++++..+.++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~cvI~D~f~~wa~~vA-~~~gIP~~~f~~~~a~~~~~~~~~~ 152 (472)
T PLN02670 78 ESSTDVPYTKQQLLKKAFDLLEPPLTTFLETS----KPDWIIYDYASHWLPSIA-AELGISKAFFSLFTAATLSFIGPPS 152 (472)
T ss_pred ccccccchhhHHHHHHHHHHhHHHHHHHHHhC----CCcEEEECCcchhHHHHH-HHcCCCEEEEehhhHHHHHHHhhhH
Confidence 4333332 123344445556666666654 799999999999999999 9999999999999988877765443
Q ss_pred hhccCCCCcccccCCcccCCCCCCC------CCCCcCCCcccCC--CchhHHHHHHHHhhhhcccEEEEeCchhhhHHHH
Q 045281 157 TLHKNTTKSFRELGSTLLNYPGLPP------FPARDMAEPMHDR--EGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAI 228 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~ 228 (481)
............ .....+|++.+ ++..+++.++... .......+.+......+.+++++|||.+||+.++
T Consensus 153 ~~~~~~~~~~~~--~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l 230 (472)
T PLN02670 153 SLMEGGDLRSTA--EDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWF 230 (472)
T ss_pred hhhhcccCCCcc--ccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHH
Confidence 221111101100 11112444322 3445666544321 1123444555556677889999999999999999
Q ss_pred HHHHcccCCCCCCCCCeEeccccCCCC-CCCCCC----CCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHH
Q 045281 229 KAMLEGQCTPGETLPPFYCIGPVVGGG-NGENRG----RDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLE 303 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~vGpl~~~~-~~~~~~----~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~ 303 (481)
+.+.+.. + ++++.|||+.... ...... +.+++|.+|||+++++++|||||||+...+.+++.+++.+|+
T Consensus 231 ~~l~~~~---~---~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~ 304 (472)
T PLN02670 231 DLLSDLY---R---KPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLE 304 (472)
T ss_pred HHHHHhh---C---CCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHH
Confidence 9987642 1 5799999997531 111100 112579999999998999999999999999999999999999
Q ss_pred hCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcE
Q 045281 304 RSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPM 383 (481)
Q Consensus 304 ~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~ 383 (481)
.++++|||+++..... ..+....+|++|.+|.+.+++++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 305 ~s~~~FlWv~r~~~~~----~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~ 380 (472)
T PLN02670 305 KSETPFFWVLRNEPGT----TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVL 380 (472)
T ss_pred HCCCCEEEEEcCCccc----ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCE
Confidence 9999999999853111 011123589999999999999999999999999999999999999999999999999999
Q ss_pred EecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHH
Q 045281 384 LAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRV 463 (481)
Q Consensus 384 v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~ 463 (481)
|++|+++||+.||++++ ++|+|+.+...+ +++.++.++|+++|+++|.|++++.||+||+++++.++. .+...+
T Consensus 381 l~~P~~~DQ~~Na~~v~-~~g~Gv~l~~~~-~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~ 454 (472)
T PLN02670 381 ILFPVLNEQGLNTRLLH-GKKLGLEVPRDE-RDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNR 454 (472)
T ss_pred EeCcchhccHHHHHHHH-HcCeeEEeeccc-cCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHH
Confidence 99999999999999995 679999997531 123489999999999999887677899999999999884 677779
Q ss_pred HHHHHHHHHHhhc
Q 045281 464 ALDNLVESFKRGC 476 (481)
Q Consensus 464 ~~~~l~~~~~~~~ 476 (481)
++++|++.+.+.+
T Consensus 455 ~~~~~~~~l~~~~ 467 (472)
T PLN02670 455 YVDELVHYLRENR 467 (472)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999876
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=4.3e-65 Score=515.79 Aligned_cols=452 Identities=29% Similarity=0.456 Sum_probs=325.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCC--CeEEEEcCCCCC--CCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVP--SVTFHQLPPPVS--GLL 77 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~--~i~~~~~~~~~~--~~~ 77 (481)
+.||+++|+|++||++|++.||+.|++|| ++|||+++.....+ ++....+..+..+ .+.+..++++.. ..|
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG--~~VT~vtt~~~~~~---i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRG--AKSTILTTPLNAKI---FEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCC--CEEEEEECCCchhh---hhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 35999999999999999999999999999 99999997643221 1111111100111 134444443321 112
Q ss_pred CCCCCCCC-------hHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHH
Q 045281 78 DTLRSPVD-------LPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLA 150 (481)
Q Consensus 78 ~~~~~~~~-------~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~ 150 (481)
.+.++... ....+...+....+.+.+.++++.++.+|||||+|.+++|+..+| +++|||+++|++++++..+
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA-~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAA-EKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred CCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHH-HHhCCCeEEeecccHHHHH
Confidence 44333210 011122222233344445555544444899999999999999999 9999999999999988777
Q ss_pred HHHHhhhhccCCCCcccccCCcccCCCCCCC---CCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHH
Q 045281 151 ALLYLPTLHKNTTKSFRELGSTLLNYPGLPP---FPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERA 227 (481)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~ 227 (481)
..+.+....+..... .. .....+|++|. ++..+++.. +........+.+..+...+.+++++||+.+||+.+
T Consensus 159 ~~~~~~~~~~~~~~~--~~-~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~ 233 (482)
T PLN03007 159 ASYCIRVHKPQKKVA--SS-SEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAY 233 (482)
T ss_pred HHHHHHhcccccccC--CC-CceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHH
Confidence 655443222111100 00 11223667652 233333321 11222333334455567788899999999999998
Q ss_pred HHHHHcccCCCCCCCCCeEeccccCCCCCC-------C-CCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHH
Q 045281 228 IKAMLEGQCTPGETLPPFYCIGPVVGGGNG-------E-NRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMA 299 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~-------~-~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~ 299 (481)
...+.+.. + .++++|||+...... . ..+..+.+|.+||++++++++|||||||+...+.+++.+++
T Consensus 234 ~~~~~~~~---~---~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~ 307 (482)
T PLN03007 234 ADFYKSFV---A---KRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIA 307 (482)
T ss_pred HHHHHhcc---C---CCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHH
Confidence 88886543 1 469999998653221 0 00113467999999999999999999999988899999999
Q ss_pred HHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhc
Q 045281 300 IGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCA 379 (481)
Q Consensus 300 ~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~ 379 (481)
.+|+.++.+|||+++..... .+....+|++|.+|..++|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 308 ~~l~~~~~~flw~~~~~~~~-----~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~ 382 (482)
T PLN03007 308 AGLEGSGQNFIWVVRKNENQ-----GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAA 382 (482)
T ss_pred HHHHHCCCCEEEEEecCCcc-----cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHc
Confidence 99999999999999863110 0112358999999999999999999999999999999999999999999999999
Q ss_pred CCcEEecccccchhhHHHHHHHhhceeeeeccCcc---cccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHh
Q 045281 380 GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE---EERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMR 456 (481)
Q Consensus 380 GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~---~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~ 456 (481)
|||||++|+++||+.||+++++.+++|+.+..... +.+.+++++|+++|+++|.|++++.||+||+++++.+++|+.
T Consensus 383 GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~ 462 (482)
T PLN03007 383 GLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVE 462 (482)
T ss_pred CCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999876777776631100 012389999999999999988777899999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHhh
Q 045281 457 DGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 457 ~~g~~~~~~~~l~~~~~~~ 475 (481)
+|||+++++++|++.+++.
T Consensus 463 ~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 463 EGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 9999999999999998864
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.2e-44 Score=364.04 Aligned_cols=375 Identities=18% Similarity=0.223 Sum_probs=250.9
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCC-CCCCC
Q 045281 4 TIVLY-TSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGL-LDTLR 81 (481)
Q Consensus 4 ~il~~-~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~ 81 (481)
+|+.+ |.++.+|..-+.+|+++|++|| |+||++++....... .. ...+++...++.. .+. .....
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rG--H~VTvi~p~~~~~~~--------~~--~~~~~~~i~~~~~-~~~~~~~~~ 88 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERG--HNVTVIKPTLRVYYA--------SH--LCGNITEIDASLS-VEYFKKLVK 88 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcC--CeEEEEecccccccc--------cC--CCCCEEEEEcCCC-hHHHHHHHh
Confidence 46644 8899999999999999999999 999999864211110 00 1234554444321 000 00000
Q ss_pred CC---------CChHHH----HHHHHHH-----hhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhcc-CCCeEEEe
Q 045281 82 SP---------VDLPAL----AYELGEL-----NNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTL-SIPTYYYF 142 (481)
Q Consensus 82 ~~---------~~~~~~----~~~~~~~-----~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~l-gIP~v~~~ 142 (481)
.. .+.... +...... ..+.+.++|+. ++.++|+||+|++..|+..+| +.+ ++|.|.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~--~~~kFDlvi~e~~~~c~~~la-~~~~~~p~i~~s 165 (507)
T PHA03392 89 SSAVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN--KNNKFDLLVTEAFLDYPLVFS-HLFGDAPVIQIS 165 (507)
T ss_pred hhhHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc--CCCceeEEEecccchhHHHHH-HHhCCCCEEEEc
Confidence 00 000000 0011111 12334444431 235899999999999999899 999 99988887
Q ss_pred cccHHHHHH-HHH-hhhhccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchh--------------------HH
Q 045281 143 TSGGSGLAA-LLY-LPTLHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKA--------------------YK 200 (481)
Q Consensus 143 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--------------------~~ 200 (481)
+........ ... .|. .+..+|.+..... +-.. +.+|...+ .+
T Consensus 166 s~~~~~~~~~~~gg~p~--------------~~syvP~~~~~~~-~~Ms-f~~R~~N~~~~~~~~~~~~~~~~~~~~l~~ 229 (507)
T PHA03392 166 SGYGLAENFETMGAVSR--------------HPVYYPNLWRSKF-GNLN-VWETINEIYTELRLYNEFSLLADEQNKLLK 229 (507)
T ss_pred CCCCchhHHHhhccCCC--------------CCeeeCCcccCCC-CCCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 754332211 100 110 0111222211111 1111 22222111 11
Q ss_pred HHHH-----HHhhhhcccEEEEeCchhhhHHHHHHHHcccCCCCCCC-CCeEeccccCCCCCCCCCCCCcccccccccCC
Q 045281 201 GFVD-----TGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTPGETL-PPFYCIGPVVGGGNGENRGRDRHESLSWLDSK 274 (481)
Q Consensus 201 ~~~~-----~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~ 274 (481)
.+.. ..+..+....+++|+.+.++. +|++ |++++|||+..+..... +.++++.+|+++.
T Consensus 230 ~~f~~~~~~~~~l~~~~~l~lvns~~~~d~-------------~rp~~p~v~~vGgi~~~~~~~~--~l~~~l~~fl~~~ 294 (507)
T PHA03392 230 QQFGPDTPTIRELRNRVQLLFVNVHPVFDN-------------NRPVPPSVQYLGGLHLHKKPPQ--PLDDYLEEFLNNS 294 (507)
T ss_pred HHcCCCCCCHHHHHhCCcEEEEecCccccC-------------CCCCCCCeeeecccccCCCCCC--CCCHHHHHHHhcC
Confidence 1100 001123334567777777775 4554 79999999987542222 6788999999987
Q ss_pred CCCcEEEEecCCCC---CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc
Q 045281 275 PSRSVLLLCFGSLG---SFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP 351 (481)
Q Consensus 275 ~~~~~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp 351 (481)
+ +++|||||||+. ..+.+.++.+++|+++.+.+|||+++... ....+ ++|+.+.+|+|
T Consensus 295 ~-~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~---------~~~~~---------p~Nv~i~~w~P 355 (507)
T PHA03392 295 T-NGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV---------EAINL---------PANVLTQKWFP 355 (507)
T ss_pred C-CcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc---------CcccC---------CCceEEecCCC
Confidence 5 369999999986 35778899999999999999999997531 00112 45999999999
Q ss_pred hHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHH
Q 045281 352 QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSEL 431 (481)
Q Consensus 352 q~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~i 431 (481)
|.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+|++ ++|+|+.+++. + +++++|.++|.++
T Consensus 356 q~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~-~~G~G~~l~~~--~---~t~~~l~~ai~~v 429 (507)
T PHA03392 356 QRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYV-ELGIGRALDTV--T---VSAAQLVLAIVDV 429 (507)
T ss_pred HHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHH-HcCcEEEeccC--C---cCHHHHHHHHHHH
Confidence 9999999998999999999999999999999999999999999999995 56999999987 6 9999999999999
Q ss_pred hcCchHHHHHHHHHHHHHHHHH
Q 045281 432 MDSEKGRAVKERVVEMKEAAAA 453 (481)
Q Consensus 432 l~~~~~~~~~~~a~~l~~~~~~ 453 (481)
++|++ |+++|+++++.++.
T Consensus 430 l~~~~---y~~~a~~ls~~~~~ 448 (507)
T PHA03392 430 IENPK---YRKNLKELRHLIRH 448 (507)
T ss_pred hCCHH---HHHHHHHHHHHHHh
Confidence 99998 99999999999985
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=8.9e-46 Score=381.79 Aligned_cols=382 Identities=20% Similarity=0.296 Sum_probs=216.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
+|+++|+ +.+|+.++..|+++|++|| |+||++++..... +.. .....+++..++.+ .+. .+....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rG--H~VTvl~~~~~~~--------~~~--~~~~~~~~~~~~~~-~~~-~~~~~~ 66 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERG--HNVTVLTPSPSSS--------LNP--SKPSNIRFETYPDP-YPE-EEFEEI 66 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH---TTSEEEHHHHHHT----------------S-CCEEEE------T-T-----
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcC--CceEEEEeecccc--------ccc--ccccceeeEEEcCC-cch-HHHhhh
Confidence 5788884 8899999999999999999 9999998642100 110 01235666666543 220 121111
Q ss_pred -CChHHHHH----------HHHHH----------hh------HHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCC
Q 045281 84 -VDLPALAY----------ELGEL----------NN------PKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSI 136 (481)
Q Consensus 84 -~~~~~~~~----------~~~~~----------~~------~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgI 136 (481)
.+....++ ..+.. .+ ..+.+.++. .++|++|+|.+..|+..+| +.++|
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~----~~fDlvI~d~f~~c~~~la-~~l~i 141 (500)
T PF00201_consen 67 FPEFISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS----EKFDLVISDAFDPCGLALA-HYLGI 141 (500)
T ss_dssp -TTHHHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH----HHHCT-EEEEEESSHHHHH-HHHHH
T ss_pred hHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----hccccceEeeccchhHHHH-HHhcC
Confidence 11111111 11100 01 112222222 3799999999999999999 99999
Q ss_pred CeEEEecccHHHHHHHHHhhhhccCCCCcccccCCcccCCCCCCCCCCCcCCCc--ccCCC-chhHHHHHH-HHhhhhcc
Q 045281 137 PTYYYFTSGGSGLAALLYLPTLHKNTTKSFRELGSTLLNYPGLPPFPARDMAEP--MHDRE-GKAYKGFVD-TGIQMAKS 212 (481)
Q Consensus 137 P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~-~~~~~~~~~-~~~~~~~~ 212 (481)
|++.+.++... ....... ......|++.|.....+.+. +.+|. +.+.....+ ........
T Consensus 142 P~i~~~s~~~~--------~~~~~~~--------~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~ 205 (500)
T PF00201_consen 142 PVIIISSSTPM--------YDLSSFS--------GGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSP 205 (500)
T ss_dssp THHHHHHCCSC--------SCCTCCT--------SCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS
T ss_pred CeEEEeccccc--------chhhhhc--------cCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhh
Confidence 99854433211 0000000 00011122222111222111 33333 222221111 11111111
Q ss_pred ---cEEEEeC----chhhhHHHHHHHHcccCCC--CCCC-CCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEE
Q 045281 213 ---AGLIVNT----FELLEERAIKAMLEGQCTP--GETL-PPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLL 282 (481)
Q Consensus 213 ---~~~l~~s----~~~le~~~~~~~~~~~~~~--~~~~-~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~v 282 (481)
...-... ..++.......+.++.+.. +|++ |++++||++...... +.+.++..|++...++++|||
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~~----~l~~~~~~~~~~~~~~~vv~v 281 (500)
T PF00201_consen 206 QDKLYKKYFGFPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPAK----PLPEELWNFLDSSGKKGVVYV 281 (500)
T ss_dssp -TTS-EEESS-GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S--------TCHHHHHHHTSTTTTTEEEEE
T ss_pred HHHHHhhhcccccccHHHHHHHHHHhhhccccCcCCcchhhcccccCcccccccc----ccccccchhhhccCCCCEEEE
Confidence 0111111 1111111221222221111 3443 899999999876554 678889999998556679999
Q ss_pred ecCCCCCCCH-HHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCc
Q 045281 283 CFGSLGSFSC-KQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESV 361 (481)
Q Consensus 283 s~GS~~~~~~-~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~ 361 (481)
||||+....+ +.++.+++++++.+.+|||++++. ....+ ++|+++.+|+||.+||.|+++
T Consensus 282 sfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~----------~~~~l---------~~n~~~~~W~PQ~~lL~hp~v 342 (500)
T PF00201_consen 282 SFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE----------PPENL---------PKNVLIVKWLPQNDLLAHPRV 342 (500)
T ss_dssp E-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS----------HGCHH---------HTTEEEESS--HHHHHTSTTE
T ss_pred ecCcccchhHHHHHHHHHHHHhhCCCccccccccc----------ccccc---------cceEEEeccccchhhhhcccc
Confidence 9999975444 558889999999999999999763 11112 258899999999999999999
Q ss_pred ceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHH
Q 045281 362 GGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVK 441 (481)
Q Consensus 362 ~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~ 441 (481)
++||||||+||++||+++|||+|++|+++||+.||++++ +.|+|+.++.. + +|.++|.++|+++|+|++ |+
T Consensus 343 ~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~-~~G~g~~l~~~--~---~~~~~l~~ai~~vl~~~~---y~ 413 (500)
T PF00201_consen 343 KLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVE-EKGVGVVLDKN--D---LTEEELRAAIREVLENPS---YK 413 (500)
T ss_dssp EEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHH-HTTSEEEEGGG--C----SHHHHHHHHHHHHHSHH---HH
T ss_pred eeeeeccccchhhhhhhccCCccCCCCcccCCccceEEE-EEeeEEEEEec--C---CcHHHHHHHHHHHHhhhH---HH
Confidence 999999999999999999999999999999999999996 56999999987 6 999999999999999998 99
Q ss_pred HHHHHHHHHHHH
Q 045281 442 ERVVEMKEAAAA 453 (481)
Q Consensus 442 ~~a~~l~~~~~~ 453 (481)
+||++++..++.
T Consensus 414 ~~a~~ls~~~~~ 425 (500)
T PF00201_consen 414 ENAKRLSSLFRD 425 (500)
T ss_dssp HHHHHHHHTTT-
T ss_pred HHHHHHHHHHhc
Confidence 999999999874
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1e-41 Score=340.79 Aligned_cols=374 Identities=18% Similarity=0.243 Sum_probs=241.2
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC--CC
Q 045281 8 YTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP--VD 85 (481)
Q Consensus 8 ~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~ 85 (481)
+.+|++||++|++.||++|+++| |+|+|++++ .++..++. .|+.|..++.. .+.+...... .+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~G--h~V~~~~~~-------~~~~~v~~-----~G~~~~~~~~~-~~~~~~~~~~~~~~ 65 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARG--HRVTYATTE-------EFAERVEA-----AGAEFVLYGSA-LPPPDNPPENTEEE 65 (392)
T ss_pred CCCCccccccccHHHHHHHHhCC--CeEEEEeCH-------HHHHHHHH-----cCCEEEecCCc-CccccccccccCcc
Confidence 36899999999999999999999 999999975 45555655 38888888653 2210111100 12
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhccCCCCc
Q 045281 86 LPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLHKNTTKS 165 (481)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (481)
....+..........+.++ .+..+..+||+||+|++++++..+| +++|||+|.+++.+..... .+...+ +
T Consensus 66 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~pDlVi~d~~~~~~~~~A-~~~giP~v~~~~~~~~~~~----~~~~~~----~ 135 (392)
T TIGR01426 66 PIDIIEKLLDEAEDVLPQL-EEAYKGDRPDLIVYDIASWTGRLLA-RKWDVPVISSFPTFAANEE----FEEMVS----P 135 (392)
T ss_pred hHHHHHHHHHHHHHHHHHH-HHHhcCCCCCEEEECCccHHHHHHH-HHhCCCEEEEehhhccccc----cccccc----c
Confidence 2222222222222222222 2222334899999999888898899 9999999988654321100 000000 0
Q ss_pred ccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhh------------cccEEEEeCchhhhHHHHHHHHc
Q 045281 166 FRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMA------------KSAGLIVNTFELLEERAIKAMLE 233 (481)
Q Consensus 166 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~s~~~le~~~~~~~~~ 233 (481)
+. +.+.. ..... ......+.+.+.+..+... ..+..+..+.+.+++
T Consensus 136 ~~---------~~~~~--~~~~~---~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~-------- 193 (392)
T TIGR01426 136 AG---------EGSAE--EGAIA---ERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQP-------- 193 (392)
T ss_pred cc---------hhhhh--hhccc---cchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCC--------
Confidence 00 00000 00000 0000111111111111100 011112222222221
Q ss_pred ccCCCCCCC-CCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEE
Q 045281 234 GQCTPGETL-PPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWV 312 (481)
Q Consensus 234 ~~~~~~~~~-~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~ 312 (481)
++..+ ++++++||+...... ...|+...+++++|||||||+.....+.++.+++++.+.+.++||.
T Consensus 194 ----~~~~~~~~~~~~Gp~~~~~~~---------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 260 (392)
T TIGR01426 194 ----AGETFDDSFTFVGPCIGDRKE---------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLS 260 (392)
T ss_pred ----CccccCCCeEEECCCCCCccc---------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEE
Confidence 12223 579999998764321 2236666566779999999987666778889999999999999998
Q ss_pred EeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccch
Q 045281 313 VRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQ 392 (481)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ 392 (481)
++.+... ..+. ..++|+.+.+|+||.++|+++++ +|||||+||++|++++|+|+|++|...||
T Consensus 261 ~g~~~~~-------------~~~~--~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq 323 (392)
T TIGR01426 261 VGRGVDP-------------ADLG--ELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQ 323 (392)
T ss_pred ECCCCCh-------------hHhc--cCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccH
Confidence 8654100 1111 12358899999999999999998 99999999999999999999999999999
Q ss_pred hhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 045281 393 KMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVES 471 (481)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (481)
+.||++++ ++|+|+.+... + +++++|.++|.+++.|++ |+++++++++.+.+ .++..++.+.+.+.
T Consensus 324 ~~~a~~l~-~~g~g~~l~~~--~---~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~----~~~~~~aa~~i~~~ 389 (392)
T TIGR01426 324 PMTARRIA-ELGLGRHLPPE--E---VTAEKLREAVLAVLSDPR---YAERLRKMRAEIRE----AGGARRAADEIEGF 389 (392)
T ss_pred HHHHHHHH-HCCCEEEeccc--c---CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH----cCCHHHHHHHHHHh
Confidence 99999995 67999999876 5 899999999999999998 99999999999985 34444555555443
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=8.8e-42 Score=342.72 Aligned_cols=372 Identities=15% Similarity=0.138 Sum_probs=231.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCC-CCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGL-LDTLRS 82 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 82 (481)
||+|+++|+.||++|+++||++|+++| |+|+|+++. .++..++. .|++|..++.. .+. ......
T Consensus 2 rIl~~~~p~~GHv~P~l~la~~L~~rG--h~V~~~t~~-------~~~~~v~~-----~G~~~~~~~~~-~~~~~~~~~~ 66 (401)
T cd03784 2 RVLITTIGSRGDVQPLVALAWALRAAG--HEVRVATPP-------EFADLVEA-----AGLEFVPVGGD-PDELLASPER 66 (401)
T ss_pred eEEEEeCCCcchHHHHHHHHHHHHHCC--CeEEEeeCH-------hHHHHHHH-----cCCceeeCCCC-HHHHHhhhhh
Confidence 799999999999999999999999999 999999976 33444554 48888887643 210 000000
Q ss_pred --------CCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHH
Q 045281 83 --------PVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLY 154 (481)
Q Consensus 83 --------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~ 154 (481)
.......+..........++++++. .+..+||+||+|.++.++..+| +++|||++.+++++.......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~pDlvi~d~~~~~~~~~A-~~~giP~v~~~~~~~~~~~~~-- 142 (401)
T cd03784 67 NAGLLLLGPGLLLGALRLLRREAEAMLDDLVAA-ARDWGPDLVVADPLAFAGAVAA-EALGIPAVRLLLGPDTPTSAF-- 142 (401)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCCEEEeCcHHHHHHHHH-HHhCCCeEEeecccCCccccC--
Confidence 0011111111122222333333332 2235999999999888888888 999999999988764311100
Q ss_pred hhhhccCCCCcccccCCcccCCCCCCCCCC-CcCCCcccCCCchhHHHHHHHHhhhhcccEEEE-eCchhhhHHHHHHHH
Q 045281 155 LPTLHKNTTKSFRELGSTLLNYPGLPPFPA-RDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIV-NTFELLEERAIKAML 232 (481)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~s~~~le~~~~~~~~ 232 (481)
.| ++.. .......... ..............++..+.-. +.+..........+.
T Consensus 143 ---------------------~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~ 197 (401)
T cd03784 143 ---------------------PP---PLGRANLRLYALLEA-ELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFS 197 (401)
T ss_pred ---------------------CC---ccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecC
Confidence 00 0000 0000000000 0000111111111111111100 000000000000111
Q ss_pred cccCCCCCCC-CCeEecc-ccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCC-HHHHHHHHHHHHhCCCcE
Q 045281 233 EGQCTPGETL-PPFYCIG-PVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFS-CKQLKEMAIGLERSGVKF 309 (481)
Q Consensus 233 ~~~~~~~~~~-~~~~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~al~~~~~~~ 309 (481)
..+..+..++ ++..++| ++....... ..+.++..|++... ++|||+|||+.... ...+..+++++...+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~--~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~ 272 (401)
T cd03784 198 PAVLPPPPDWPRFDLVTGYGFRDVPYNG---PPPPELWLFLAAGR--PPVYVGFGSMVVRDPEALARLDVEAVATLGQRA 272 (401)
T ss_pred cccCCCCCCccccCcEeCCCCCCCCCCC---CCCHHHHHHHhCCC--CcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeE
Confidence 1111112222 3556675 443322211 34566778887644 49999999998644 456778999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccc
Q 045281 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 310 iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~ 389 (481)
||+++..... . ...++|+.+.+|+||.++|+++++ ||||||+||++|++++|||+|++|+.
T Consensus 273 i~~~g~~~~~--------~---------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~ 333 (401)
T cd03784 273 ILSLGWGGLG--------A---------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFF 333 (401)
T ss_pred EEEccCcccc--------c---------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCC
Confidence 9998764100 0 112468999999999999999999 99999999999999999999999999
Q ss_pred cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAA 453 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~ 453 (481)
.||+.||++++ ++|+|+.+... + +++++|.++++++++++ ++++++++++.+++
T Consensus 334 ~dQ~~~a~~~~-~~G~g~~l~~~--~---~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~ 387 (401)
T cd03784 334 GDQPFWAARVA-ELGAGPALDPR--E---LTAERLAAALRRLLDPP----SRRRAAALLRRIRE 387 (401)
T ss_pred CCcHHHHHHHH-HCCCCCCCCcc--c---CCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh
Confidence 99999999995 67999999887 5 89999999999999865 56667777776653
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=3.1e-40 Score=340.66 Aligned_cols=394 Identities=27% Similarity=0.416 Sum_probs=243.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhcc---CCCCCeEEEEcCCCCCCCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVS---ATVPSVTFHQLPPPVSGLLDT 79 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~---~~~~~i~~~~~~~~~~~~~~~ 79 (481)
.|++++++|++||++|+..||+.|+++| |+||++++....... ... ..... .....+.+...+ ...+ ..
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~g--h~vt~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 77 (496)
T KOG1192|consen 6 AHNILVPFPGQSHLNPMLQLAKRLAERG--HNVTVVTPSFNALKL--SKS-SKSKSIKKINPPPFEFLTIP-DGLP--EG 77 (496)
T ss_pred ceeEEEECCcccHHHHHHHHHHHHHHcC--CceEEEEeechhccc--CCc-ccceeeeeeecChHHhhhhh-hhhc--cc
Confidence 4899999999999999999999999999 999999965432211 000 00000 000001111110 0011 11
Q ss_pred CCCCC-ChHHHHHHHHHHhhHHHHHHHHHhhc--cCCccEEEECCCCchhHHHHhhcc-CCCeEEEecccHHHHHHHHHh
Q 045281 80 LRSPV-DLPALAYELGELNNPKLHETLITISK--RSNLKAFVIDFFCSPAFQVSSSTL-SIPTYYYFTSGGSGLAALLYL 155 (481)
Q Consensus 80 ~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~pD~vV~D~~~~~~~~vA~~~l-gIP~v~~~~~~~~~~~~~~~~ 155 (481)
.+... ............+...+++.+..+.. ..++|++|+|.+..|...++ ... +|+..++.+..........+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~g~~~ 156 (496)
T KOG1192|consen 78 WEDDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLA-IPSFVIPLLSFPTSSAVLLALGLPS 156 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhc-ccceEEEeecccCchHHHHhcCCcC
Confidence 11110 11111222333344455554444332 23499999999877777677 665 499998888877655443221
Q ss_pred hhhccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHH--------------HHHhh--------hhccc
Q 045281 156 PTLHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFV--------------DTGIQ--------MAKSA 213 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~--------~~~~~ 213 (481)
+.. .+|........+.. .+..+...+..... ..... .....
T Consensus 157 ~~~----------------~~p~~~~~~~~~~~-~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (496)
T KOG1192|consen 157 PLS----------------YVPSPFSLSSGDDM-SFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTAS 219 (496)
T ss_pred ccc----------------ccCcccCccccccC-cHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHH
Confidence 111 01111000000000 01111100000000 00000 01111
Q ss_pred EEEEeC-chhhhHHHHHHHHcccCCCCCC-CCCeEeccccCCCCCCCCCCCCcccccccccCCCCC--cEEEEecCCCC-
Q 045281 214 GLIVNT-FELLEERAIKAMLEGQCTPGET-LPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSR--SVLLLCFGSLG- 288 (481)
Q Consensus 214 ~~l~~s-~~~le~~~~~~~~~~~~~~~~~-~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~GS~~- 288 (481)
.++.++ +..++..... .+++++ .+++++|||+...... .....+.+|++..+.. ++|||||||+.
T Consensus 220 ~i~~~~~~~~ln~~~~~------~~~~~~~~~~v~~IG~l~~~~~~----~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~ 289 (496)
T KOG1192|consen 220 GIIVNASFIFLNSNPLL------DFEPRPLLPKVIPIGPLHVKDSK----QKSPLPLEWLDILDESRHSVVYISFGSMVN 289 (496)
T ss_pred HhhhcCeEEEEccCccc------CCCCCCCCCCceEECcEEecCcc----ccccccHHHHHHHhhccCCeEEEECCcccc
Confidence 233333 4444443221 111333 4899999999887332 1112566777776654 79999999998
Q ss_pred --CCCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHh-hhccCcceE
Q 045281 289 --SFSCKQLKEMAIGLERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEV-LNHESVGGF 364 (481)
Q Consensus 289 --~~~~~~~~~~~~al~~~-~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~l-L~~~~~~~~ 364 (481)
..+.+++.+++.+++.. +++|||+++..... .+++++.++ ...|++..+|+||.++ |+|+++++|
T Consensus 290 ~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~----------~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~F 358 (496)
T KOG1192|consen 290 SADLPEEQKKELAKALESLQGVTFLWKYRPDDSI----------YFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGF 358 (496)
T ss_pred cccCCHHHHHHHHHHHHhCCCceEEEEecCCcch----------hhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEE
Confidence 78999999999999999 88999999874111 023344433 3457888899999998 599999999
Q ss_pred EeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHH
Q 045281 365 VTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERV 444 (481)
Q Consensus 365 vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a 444 (481)
|||||||||+|++++|||+|++|+++||+.||+++++++++++....+ ++.+.+.+++.+++.+++ |+++|
T Consensus 359 vTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~------~~~~~~~~~~~~il~~~~---y~~~~ 429 (496)
T KOG1192|consen 359 VTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRD------LVSEELLEAIKEILENEE---YKEAA 429 (496)
T ss_pred EECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhh------cCcHHHHHHHHHHHcChH---HHHHH
Confidence 999999999999999999999999999999999998774555555553 666669999999999999 99999
Q ss_pred HHHHHHHH
Q 045281 445 VEMKEAAA 452 (481)
Q Consensus 445 ~~l~~~~~ 452 (481)
+++++..+
T Consensus 430 ~~l~~~~~ 437 (496)
T KOG1192|consen 430 KRLSEILR 437 (496)
T ss_pred HHHHHHHH
Confidence 99999876
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=9.6e-39 Score=315.63 Aligned_cols=385 Identities=21% Similarity=0.270 Sum_probs=241.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC-
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLR- 81 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~- 81 (481)
+||+++..|+.||++|+++||++|.++| |+|+|+|+. .|++.+++. |+.|..++....+ ....
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~g--heV~~~~~~-------~~~~~ve~a-----g~~f~~~~~~~~~--~~~~~ 65 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRG--HEVVFASTG-------KFKEFVEAA-----GLAFVAYPIRDSE--LATED 65 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcC--CeEEEEeCH-------HHHHHHHHh-----CcceeeccccCCh--hhhhh
Confidence 5899999999999999999999999999 999999966 566677764 6777777654221 1111
Q ss_pred CCCChHHHHHHHH---HHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHH-Hhhh
Q 045281 82 SPVDLPALAYELG---ELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALL-YLPT 157 (481)
Q Consensus 82 ~~~~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~-~~~~ 157 (481)
...+....+...+ ......+.+.+.+. .+|+++.|...+.+ .++ +..++|++.......+...... +++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (406)
T COG1819 66 GKFAGVKSFRRLLQQFKKLIRELLELLREL----EPDLVVDDARLSLG-LAA-RLLGIPVVGINVAPYTPLPAAGLPLPP 139 (406)
T ss_pred hhhhccchhHHHhhhhhhhhHHHHHHHHhc----chhhhhcchhhhhh-hhh-hhcccchhhhhhhhccCCcccccCccc
Confidence 1111111111111 12223334445554 89999999855545 677 9999999976666543221110 0000
Q ss_pred hccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEe-------CchhhhHHHHHH
Q 045281 158 LHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVN-------TFELLEERAIKA 230 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------s~~~le~~~~~~ 230 (481)
... ......+..+ +......+....+. ...... .+.........+ +-+.++..
T Consensus 140 ~~~----------~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~---- 199 (406)
T COG1819 140 VGI----------AGKLPIPLYP-LPPRLVRPLIFARS---WLPKLV--VRRNLGLELGLPNIRRLFASGPLLEIA---- 199 (406)
T ss_pred ccc----------cccccccccc-cChhhccccccchh---hhhhhh--hhhhccccccccchHHHhcCCCCcccc----
Confidence 000 0000011000 00000000000000 000000 000000000011 11111110
Q ss_pred HHcccCCCCCCCC-CeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcE
Q 045281 231 MLEGQCTPGETLP-PFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKF 309 (481)
Q Consensus 231 ~~~~~~~~~~~~~-~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 309 (481)
..+..++|++..| ...++||+...... +...|... ++++|||||||.... .+.++.+++++...+.++
T Consensus 200 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~v 268 (406)
T COG1819 200 YTDVLFPPGDRLPFIGPYIGPLLGEAAN--------ELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVRV 268 (406)
T ss_pred ccccccCCCCCCCCCcCccccccccccc--------cCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEE
Confidence 1111122212222 45666776654332 33344333 344999999999966 888999999999999999
Q ss_pred EEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccc
Q 045281 310 LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 310 iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~ 389 (481)
|..++..+ .....+| .|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|..
T Consensus 269 i~~~~~~~--------~~~~~~p---------~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~ 329 (406)
T COG1819 269 IVSLGGAR--------DTLVNVP---------DNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDG 329 (406)
T ss_pred EEeccccc--------cccccCC---------CceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCC
Confidence 99986521 0112233 58999999999999999999 99999999999999999999999999
Q ss_pred cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (481)
.||+.||.|+ +++|+|+.+..+ + ++++.|+++|+++|.|+. |+++++++++.+++ ++| .+.+.+++
T Consensus 330 ~DQ~~nA~rv-e~~G~G~~l~~~--~---l~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~~---~~g--~~~~a~~l 395 (406)
T COG1819 330 ADQPLNAERV-EELGAGIALPFE--E---LTEERLRAAVNEVLADDS---YRRAAERLAEEFKE---EDG--PAKAADLL 395 (406)
T ss_pred cchhHHHHHH-HHcCCceecCcc--c---CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhh---ccc--HHHHHHHH
Confidence 9999999999 567999999987 6 999999999999999999 99999999999996 355 34455555
Q ss_pred HHHH
Q 045281 470 ESFK 473 (481)
Q Consensus 470 ~~~~ 473 (481)
+...
T Consensus 396 e~~~ 399 (406)
T COG1819 396 EEFA 399 (406)
T ss_pred HHHH
Confidence 4433
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=1.1e-25 Score=219.86 Aligned_cols=315 Identities=15% Similarity=0.139 Sum_probs=197.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLR 81 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (481)
+++|++.+.++.||+.|.++||++|.++| |+|.|+++....+.. .+. ..++.+..++...+.
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g--~~v~~vg~~~~~e~~-----l~~-----~~g~~~~~~~~~~l~------ 62 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDN--WDISYIGSHQGIEKT-----IIE-----KENIPYYSISSGKLR------ 62 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCC--CEEEEEECCCccccc-----cCc-----ccCCcEEEEeccCcC------
Confidence 14899999999999999999999999999 999999965443221 122 136777777643221
Q ss_pred CCCChHHHHHHHHH--HhhHHHHHHHHHhhccCCccEEEECCCCc--hhHHHHhhccCCCeEEEecccHHHHHHHHHhhh
Q 045281 82 SPVDLPALAYELGE--LNNPKLHETLITISKRSNLKAFVIDFFCS--PAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPT 157 (481)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~pD~vV~D~~~~--~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~ 157 (481)
.. .....+..... ...-....+++++ +||+||...-.. ++..+| +.+++|++......
T Consensus 63 ~~-~~~~~~~~~~~~~~~~~~~~~i~~~~----kPdvvi~~Ggy~s~p~~~aa-~~~~~p~~i~e~n~------------ 124 (352)
T PRK12446 63 RY-FDLKNIKDPFLVMKGVMDAYVRIRKL----KPDVIFSKGGFVSVPVVIGG-WLNRVPVLLHESDM------------ 124 (352)
T ss_pred CC-chHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEecCchhhHHHHHHH-HHcCCCEEEECCCC------------
Confidence 11 11122222211 1222334456666 999999876222 245566 99999998653332
Q ss_pred hccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCC
Q 045281 158 LHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 237 (481)
+||+.+ .-..+..+.+ ..+|++-.. .+
T Consensus 125 ------------------~~g~~n------------------------r~~~~~a~~v-~~~f~~~~~----~~------ 151 (352)
T PRK12446 125 ------------------TPGLAN------------------------KIALRFASKI-FVTFEEAAK----HL------ 151 (352)
T ss_pred ------------------CccHHH------------------------HHHHHhhCEE-EEEccchhh----hC------
Confidence 111110 0011222333 334433211 11
Q ss_pred CCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHH-HHHHHHHHHhCCCcEEEEEeCC
Q 045281 238 PGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQ-LKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~-~~~~~~al~~~~~~~iw~~~~~ 316 (481)
+. .++.++|+.+...... .......+.+.-.+++++|+|..||+.....+. +..++..+.. +..++|+++.+
T Consensus 152 ~~---~k~~~tG~Pvr~~~~~---~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~ 224 (352)
T PRK12446 152 PK---EKVIYTGSPVREEVLK---GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKG 224 (352)
T ss_pred CC---CCeEEECCcCCccccc---ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCc
Confidence 11 4788999665543221 111111122222334559999999998654432 4444444432 47888988764
Q ss_pred CCCCccccccccccCchhhHhhhcCCCcEEeccc-c-hHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccc-----
Q 045281 317 APDSVENRSSLESLLPEGFLDRTKDRGLVVESWA-P-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY----- 389 (481)
Q Consensus 317 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v-p-q~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~----- 389 (481)
. + +....+. .++.+..|+ + ..++|..+++ +|||||.+|+.|++++|+|+|++|+.
T Consensus 225 ~-------------~-~~~~~~~--~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~ 286 (352)
T PRK12446 225 N-------------L-DDSLQNK--EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASR 286 (352)
T ss_pred h-------------H-HHHHhhc--CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCC
Confidence 1 0 0101111 244556887 4 4578999999 99999999999999999999999984
Q ss_pred cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCch
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
.||..||..++ +.|+|..+..+ + ++++.|.+++.++++|++
T Consensus 287 ~~Q~~Na~~l~-~~g~~~~l~~~--~---~~~~~l~~~l~~ll~~~~ 327 (352)
T PRK12446 287 GDQILNAESFE-RQGYASVLYEE--D---VTVNSLIKHVEELSHNNE 327 (352)
T ss_pred chHHHHHHHHH-HCCCEEEcchh--c---CCHHHHHHHHHHHHcCHH
Confidence 48999999996 56999999876 6 999999999999998865
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=4.1e-23 Score=200.75 Aligned_cols=302 Identities=14% Similarity=0.167 Sum_probs=186.3
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 045281 4 TIVLYTSP-GRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRS 82 (481)
Q Consensus 4 ~il~~~~~-~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (481)
||+|...+ +.||+...++||++| +| |+|+|++...... .+.. .+....++..... . ...
T Consensus 2 kIl~~v~~~G~GH~~R~~~la~~L--rg--~~v~~~~~~~~~~-------~~~~------~~~~~~~~~~~~~--~-~~~ 61 (318)
T PF13528_consen 2 KILFYVQGHGLGHASRCLALARAL--RG--HEVTFITSGPAPE-------FLKP------RFPVREIPGLGPI--Q-ENG 61 (318)
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH--cc--CceEEEEcCCcHH-------Hhcc------ccCEEEccCceEe--c-cCC
Confidence 57777665 999999999999999 69 9999999653211 2211 2344444332111 1 111
Q ss_pred CCChHHHHHHH------HHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhh
Q 045281 83 PVDLPALAYEL------GELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLP 156 (481)
Q Consensus 83 ~~~~~~~~~~~------~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~ 156 (481)
..+........ .......+.+++++. +||+||+|. .+.+..+| +..|||++.+........
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~pDlVIsD~-~~~~~~aa-~~~giP~i~i~~~~~~~~------- 128 (318)
T PF13528_consen 62 RLDRWKTVRNNIRWLARLARRIRREIRWLREF----RPDLVISDF-YPLAALAA-RRAGIPVIVISNQYWFLH------- 128 (318)
T ss_pred ccchHHHHHHHHHhhHHHHHHHHHHHHHHHhc----CCCEEEEcC-hHHHHHHH-HhcCCCEEEEEehHHccc-------
Confidence 11222222221 122333344444444 999999995 45566777 999999998877764310
Q ss_pred hhccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhh--hhcccEEEEeCchhhhHHHHHHHHcc
Q 045281 157 TLHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQ--MAKSAGLIVNTFELLEERAIKAMLEG 234 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~s~~~le~~~~~~~~~~ 234 (481)
+.... .... .......+.... .......+.-++. ..
T Consensus 129 --------------------~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~---------- 166 (318)
T PF13528_consen 129 --------------------PNFWL---------PWDQ--DFGRLIERYIDRYHFPPADRRLALSFY-PP---------- 166 (318)
T ss_pred --------------------ccCCc---------chhh--hHHHHHHHhhhhccCCcccceecCCcc-cc----------
Confidence 00000 0000 000111111111 2223333333333 11
Q ss_pred cCCCCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCC-CcEEEEE
Q 045281 235 QCTPGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSG-VKFLWVV 313 (481)
Q Consensus 235 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~iw~~ 313 (481)
.....++.++||+........ + . .+...|+|+||..... .++++++..+ ..+++.
T Consensus 167 ----~~~~~~~~~~~p~~~~~~~~~----~-------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~- 222 (318)
T PF13528_consen 167 ----LPPFFRVPFVGPIIRPEIREL----P-------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF- 222 (318)
T ss_pred ----ccccccccccCchhccccccc----C-------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-
Confidence 000135667888876443211 0 1 1234899999998743 6677777766 566555
Q ss_pred eCCCCCCccccccccccCchhhHhhhcCCCcEEeccc--chHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccc--c
Q 045281 314 RAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWA--PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL--Y 389 (481)
Q Consensus 314 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v--pq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~--~ 389 (481)
+... .....+|+.+..|. ...++|..+++ +|||||+||++|++++|+|+|++|. .
T Consensus 223 g~~~-------------------~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~ 281 (318)
T PF13528_consen 223 GPNA-------------------ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQ 281 (318)
T ss_pred cCCc-------------------ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 4320 01124688898876 45779999999 9999999999999999999999999 7
Q ss_pred cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHH
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSEL 431 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~i 431 (481)
.||..||+++ +++|+|+.+... + ++++.|+++++++
T Consensus 282 ~EQ~~~a~~l-~~~G~~~~~~~~--~---~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 282 DEQEYNARKL-EELGLGIVLSQE--D---LTPERLAEFLERL 317 (318)
T ss_pred chHHHHHHHH-HHCCCeEEcccc--c---CCHHHHHHHHhcC
Confidence 8999999999 577999999877 6 9999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=1.9e-22 Score=194.59 Aligned_cols=322 Identities=16% Similarity=0.165 Sum_probs=202.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCe-EEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCF-SIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRS 82 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h-~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (481)
+|++...++.||+.|.++|+++|.++| . +|.+..+....+. ......++.++.++..... ....
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g--~~~v~~~~~~~~~e~----------~l~~~~~~~~~~I~~~~~~---~~~~ 66 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRG--WEQVIVLGTGDGLEA----------FLVKQYGIEFELIPSGGLR---RKGS 66 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhC--ccEEEEeccccccee----------eeccccCceEEEEeccccc---ccCc
Confidence 588899999999999999999999999 7 5777754433222 1112347888888765433 1111
Q ss_pred CCChHHHHHHHH--HHhhHHHHHHHHHhhccCCccEEEECC-CCch-hHHHHhhccCCCeEEEecccHHHHHHHHHhhhh
Q 045281 83 PVDLPALAYELG--ELNNPKLHETLITISKRSNLKAFVIDF-FCSP-AFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTL 158 (481)
Q Consensus 83 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~pD~vV~D~-~~~~-~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~ 158 (481)
. ..+...+ -......+.+++++ +||+||.=. +... +..+| ..+|||.++.-+-.
T Consensus 67 ~----~~~~~~~~~~~~~~~a~~il~~~----kPd~vig~Ggyvs~P~~~Aa-~~~~iPv~ihEqn~------------- 124 (357)
T COG0707 67 L----KLLKAPFKLLKGVLQARKILKKL----KPDVVIGTGGYVSGPVGIAA-KLLGIPVIIHEQNA------------- 124 (357)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHc----CCCEEEecCCccccHHHHHH-HhCCCCEEEEecCC-------------
Confidence 1 1122222 23445667777887 999999844 3333 44455 99999999653322
Q ss_pred ccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhh-hcccEEEEeCchhhhHHHHHHHHcccCC
Q 045281 159 HKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQM-AKSAGLIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~~ 237 (481)
.||+.+ +.. +.++. +..+|+..+. ..
T Consensus 125 -----------------~~G~an-------------------------k~~~~~a~~-V~~~f~~~~~----------~~ 151 (357)
T COG0707 125 -----------------VPGLAN-------------------------KILSKFAKK-VASAFPKLEA----------GV 151 (357)
T ss_pred -----------------CcchhH-------------------------HHhHHhhce-eeeccccccc----------cC
Confidence 333221 111 11222 2334443221 00
Q ss_pred CCCCCCCeEecc-ccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHH-HHHHHHHHHHhCCCcEEEEEeC
Q 045281 238 PGETLPPFYCIG-PVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCK-QLKEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 238 ~~~~~~~~~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~-~~~~~~~al~~~~~~~iw~~~~ 315 (481)
++ .++..+| |+....... + ...+ .+ +...+..+|+|.-||+....-+ .+...+..+.+ +..+++.++.
T Consensus 152 ~~---~~~~~tG~Pvr~~~~~~---~-~~~~-~~-~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~ 221 (357)
T COG0707 152 KP---ENVVVTGIPVRPEFEEL---P-AAEV-RK-DGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGK 221 (357)
T ss_pred CC---CceEEecCcccHHhhcc---c-hhhh-hh-hccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCc
Confidence 01 3688888 554432210 0 0011 01 1111344999999999844332 23334444444 4677777765
Q ss_pred CCCCCccccccccccCchhhHhhhcCCC-cEEecccch-HHhhhccCcceEEeccCchhHHHHHhcCCcEEeccc-c---
Q 045281 316 PAPDSVENRSSLESLLPEGFLDRTKDRG-LVVESWAPQ-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL-Y--- 389 (481)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~vpq-~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~-~--- 389 (481)
+. .+.....+...| +.+..|.++ ..++..+++ +||++|.+|+.|++++|+|+|.+|+ .
T Consensus 222 ~~--------------~~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~ 285 (357)
T COG0707 222 ND--------------LEELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGAD 285 (357)
T ss_pred ch--------------HHHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCcc
Confidence 41 123334444445 777788886 458888998 9999999999999999999999998 3
Q ss_pred cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEK-GRAVKERVVEM 447 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l 447 (481)
.||..||+.+++ .|.|..++.. + +|++++.+.|.+++++++ .+.|+++++.+
T Consensus 286 ~~Q~~NA~~l~~-~gaa~~i~~~--~---lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~ 338 (357)
T COG0707 286 GHQEYNAKFLEK-AGAALVIRQS--E---LTPEKLAELILRLLSNPEKLKAMAENAKKL 338 (357)
T ss_pred chHHHHHHHHHh-CCCEEEeccc--c---CCHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 389999999965 5999999998 6 999999999999999865 33344444333
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=3.7e-21 Score=186.72 Aligned_cols=124 Identities=15% Similarity=0.228 Sum_probs=91.6
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc--hHHh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP--QVEV 355 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp--q~~l 355 (481)
+.|+|.+||.. ...+++++++.+. +.+++.... . ... .+ .+|+.+.+|.| ..++
T Consensus 189 ~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~-~-----------~~~----~~-~~~v~~~~~~~~~~~~~ 244 (321)
T TIGR00661 189 DYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYE-V-----------AKN----SY-NENVEIRRITTDNFKEL 244 (321)
T ss_pred CcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCC-C-----------Ccc----cc-CCCEEEEECChHHHHHH
Confidence 37888888864 2456777777653 333333220 0 001 11 25888889997 4668
Q ss_pred hhccCcceEEeccCchhHHHHHhcCCcEEeccccc--chhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhc
Q 045281 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMD 433 (481)
Q Consensus 356 L~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~ 433 (481)
|+.+++ +|||||++|++|++++|+|+|++|+.+ ||..||+.++ +.|+|+.++.. + + ++.+++.+++.
T Consensus 245 l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~-~~g~~~~l~~~--~---~---~~~~~~~~~~~ 313 (321)
T TIGR00661 245 IKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLE-DLGCGIALEYK--E---L---RLLEAILDIRN 313 (321)
T ss_pred HHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHH-HCCCEEEcChh--h---H---HHHHHHHhccc
Confidence 888998 999999999999999999999999955 8999999995 56999999886 4 4 66677777777
Q ss_pred Cch
Q 045281 434 SEK 436 (481)
Q Consensus 434 ~~~ 436 (481)
|++
T Consensus 314 ~~~ 316 (321)
T TIGR00661 314 MKR 316 (321)
T ss_pred ccc
Confidence 776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.82 E-value=1.4e-17 Score=164.52 Aligned_cols=343 Identities=15% Similarity=0.098 Sum_probs=196.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLR 81 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (481)
+++|+|+..+..||...++.|+++|.++| |+|++++....... ... ...+++++.++..... + .
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g--~ev~vv~~~~~~~~-----~~~-----~~~g~~~~~~~~~~~~---~-~ 64 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRG--WEVLYLGTARGMEA-----RLV-----PKAGIEFHFIPSGGLR---R-K 64 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCC--CEEEEEECCCchhh-----hcc-----ccCCCcEEEEeccCcC---C-C
Confidence 15799999889999999999999999999 99999986431100 011 1136677766543211 1 1
Q ss_pred CCCChHHHHHHH--HHHhhHHHHHHHHHhhccCCccEEEECC-CCch-hHHHHhhccCCCeEEEecccHHHHHHHHHhhh
Q 045281 82 SPVDLPALAYEL--GELNNPKLHETLITISKRSNLKAFVIDF-FCSP-AFQVSSSTLSIPTYYYFTSGGSGLAALLYLPT 157 (481)
Q Consensus 82 ~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~pD~vV~D~-~~~~-~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~ 157 (481)
.....+... .-.....++.++++. +||+|++.. ...+ +..++ +..++|++......
T Consensus 65 ---~~~~~l~~~~~~~~~~~~~~~~ik~~----~pDvv~~~~~~~~~~~~~~~-~~~~~p~v~~~~~~------------ 124 (357)
T PRK00726 65 ---GSLANLKAPFKLLKGVLQARKILKRF----KPDVVVGFGGYVSGPGGLAA-RLLGIPLVIHEQNA------------ 124 (357)
T ss_pred ---ChHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEECCCcchhHHHHHH-HHcCCCEEEEcCCC------------
Confidence 111111111 112233455566555 999999996 3233 34455 88999998431100
Q ss_pred hccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCC
Q 045281 158 LHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 237 (481)
.++ ....+ ..+..+.++.. ++.. . .+ .
T Consensus 125 ------------------~~~-------------------~~~r~-----~~~~~d~ii~~-~~~~---~----~~---~ 151 (357)
T PRK00726 125 ------------------VPG-------------------LANKL-----LARFAKKVATA-FPGA---F----PE---F 151 (357)
T ss_pred ------------------Ccc-------------------HHHHH-----HHHHhchheEC-chhh---h----hc---c
Confidence 000 00000 01123333322 2211 0 00 1
Q ss_pred CCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCC--cEEEEEeC
Q 045281 238 PGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGV--KFLWVVRA 315 (481)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~--~~iw~~~~ 315 (481)
++ .++.++|+......... .. ...-+...++..+|++..|+.. .......+.+++++... .++|.++.
T Consensus 152 ~~---~~i~vi~n~v~~~~~~~--~~---~~~~~~~~~~~~~i~~~gg~~~--~~~~~~~l~~a~~~~~~~~~~~~~~G~ 221 (357)
T PRK00726 152 FK---PKAVVTGNPVREEILAL--AA---PPARLAGREGKPTLLVVGGSQG--ARVLNEAVPEALALLPEALQVIHQTGK 221 (357)
T ss_pred CC---CCEEEECCCCChHhhcc--cc---hhhhccCCCCCeEEEEECCcHh--HHHHHHHHHHHHHHhhhCcEEEEEcCC
Confidence 11 67888886554322110 00 0001111122336665545432 12222233366655433 44566665
Q ss_pred CCCCCccccccccccCchhhHhhhc-CCCcEEecccc-hHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccc----c
Q 045281 316 PAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAP-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL----Y 389 (481)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vp-q~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~----~ 389 (481)
+. .+.+.+... +-++.+.+|+. ..++++.+++ +|+|+|.++++||+++|+|+|++|. .
T Consensus 222 g~--------------~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~ 285 (357)
T PRK00726 222 GD--------------LEEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAAD 285 (357)
T ss_pred Cc--------------HHHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCc
Confidence 41 022222222 12377789984 5789999999 9999999999999999999999997 4
Q ss_pred cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 045281 390 AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 390 ~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (481)
+||..|+..+++ .|.|..+..+ + ++++.|.+++.++++|++ ++++..+-+.... +.++..+.++.+.
T Consensus 286 ~~~~~~~~~i~~-~~~g~~~~~~--~---~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~ 352 (357)
T PRK00726 286 DHQTANARALVD-AGAALLIPQS--D---LTPEKLAEKLLELLSDPE---RLEAMAEAARALG----KPDAAERLADLIE 352 (357)
T ss_pred CcHHHHHHHHHH-CCCEEEEEcc--c---CCHHHHHHHHHHHHcCHH---HHHHHHHHHHhcC----CcCHHHHHHHHHH
Confidence 689999999964 5999999876 4 789999999999999987 4444333333222 2444445555555
Q ss_pred HHH
Q 045281 470 ESF 472 (481)
Q Consensus 470 ~~~ 472 (481)
+-+
T Consensus 353 ~~~ 355 (357)
T PRK00726 353 ELA 355 (357)
T ss_pred HHh
Confidence 544
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.79 E-value=8.4e-17 Score=158.62 Aligned_cols=314 Identities=14% Similarity=0.111 Sum_probs=185.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
||++...++.||+...+.|++.|.++| |+|++++....... ..+ ...+++++.++..... . .
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G--~ev~v~~~~~~~~~-----~~~-----~~~~~~~~~~~~~~~~---~---~ 62 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERG--AEVLFLGTKRGLEA-----RLV-----PKAGIPLHTIPVGGLR---R---K 62 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCC--CEEEEEECCCcchh-----hcc-----cccCCceEEEEecCcC---C---C
Confidence 689999999999999999999999999 99999986532111 011 1125677766543221 1 0
Q ss_pred CChHHHHHHHH--HHhhHHHHHHHHHhhccCCccEEEECCC--CchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhc
Q 045281 84 VDLPALAYELG--ELNNPKLHETLITISKRSNLKAFVIDFF--CSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLH 159 (481)
Q Consensus 84 ~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~pD~vV~D~~--~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 159 (481)
.....+.... -.....+..++++. +||+|++... ..++..++ +..++|++......
T Consensus 63 -~~~~~~~~~~~~~~~~~~~~~~i~~~----~pDvI~~~~~~~~~~~~~~a-~~~~~p~v~~~~~~-------------- 122 (350)
T cd03785 63 -GSLKKLKAPFKLLKGVLQARKILKKF----KPDVVVGFGGYVSGPVGLAA-KLLGIPLVIHEQNA-------------- 122 (350)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEECCCCcchHHHHHH-HHhCCCEEEEcCCC--------------
Confidence 1111111111 12223455556655 9999998752 22344566 89999998431100
Q ss_pred cCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCCCC
Q 045281 160 KNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTPG 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~ 239 (481)
.++ .... ...+..+.++..+-...+. +++
T Consensus 123 ----------------~~~-------------------~~~~-----~~~~~~~~vi~~s~~~~~~-----------~~~ 151 (350)
T cd03785 123 ----------------VPG-------------------LANR-----LLARFADRVALSFPETAKY-----------FPK 151 (350)
T ss_pred ----------------Ccc-------------------HHHH-----HHHHhhCEEEEcchhhhhc-----------CCC
Confidence 000 0000 0112345555543322221 111
Q ss_pred CCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCH-HHHHHHHHHHHhCCCcEEEEEeCCCC
Q 045281 240 ETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSC-KQLKEMAIGLERSGVKFLWVVRAPAP 318 (481)
Q Consensus 240 ~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~iw~~~~~~~ 318 (481)
.++.++|......... ..+. ...+...++..+|++..|+...... +.+...+..+...+..+++.++.+.
T Consensus 152 ---~~~~~i~n~v~~~~~~---~~~~--~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~- 222 (350)
T cd03785 152 ---DKAVVTGNPVREEILA---LDRE--RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD- 222 (350)
T ss_pred ---CcEEEECCCCchHHhh---hhhh--HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc-
Confidence 4677788644322110 0000 1122222333356665566542111 2223334444433445566665531
Q ss_pred CCccccccccccCchhhHhhhc--CCCcEEeccc-chHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccc----ccc
Q 045281 319 DSVENRSSLESLLPEGFLDRTK--DRGLVVESWA-PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL----YAE 391 (481)
Q Consensus 319 ~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~v-pq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~----~~D 391 (481)
.+.+.+... ..|+.+.+|+ +..++|..+++ +|+++|.+|+.||+.+|+|+|++|. ..+
T Consensus 223 -------------~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~ 287 (350)
T cd03785 223 -------------LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDH 287 (350)
T ss_pred -------------HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCc
Confidence 012222221 3688999998 55779999999 9999999999999999999999986 467
Q ss_pred hhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCch
Q 045281 392 QKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 392 Q~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
|..|+..+.+ .|.|..++.. + .+++++.+++.+++.|++
T Consensus 288 ~~~~~~~l~~-~g~g~~v~~~--~---~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 288 QTANARALVK-AGAAVLIPQE--E---LTPERLAAALLELLSDPE 326 (350)
T ss_pred HHHhHHHHHh-CCCEEEEecC--C---CCHHHHHHHHHHHhcCHH
Confidence 9999999964 5999999875 4 689999999999998876
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=1.2e-14 Score=143.26 Aligned_cols=78 Identities=18% Similarity=0.282 Sum_probs=68.0
Q ss_pred chHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccc---cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHH
Q 045281 351 PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY---AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQR 427 (481)
Q Consensus 351 pq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~a 427 (481)
+..++|..+++ +|+++|.+|++||+++|+|+|++|.. .+|..|+..+. ..|.|..+... + .+++.|.++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~-~~~~G~~~~~~--~---~~~~~l~~~ 314 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLE-DLGAGLVIRQK--E---LLPEKLLEA 314 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHH-HCCCEEEEecc--c---CCHHHHHHH
Confidence 55779999999 99999988999999999999999873 57888988885 56999998876 4 689999999
Q ss_pred HHHHhcCch
Q 045281 428 VSELMDSEK 436 (481)
Q Consensus 428 v~~il~~~~ 436 (481)
+.++++|++
T Consensus 315 i~~ll~~~~ 323 (348)
T TIGR01133 315 LLKLLLDPA 323 (348)
T ss_pred HHHHHcCHH
Confidence 999999887
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.70 E-value=1.4e-15 Score=150.78 Aligned_cols=348 Identities=13% Similarity=0.060 Sum_probs=187.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRS 82 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (481)
++|++...++.||+.|. +|+++|.++| ++++|++.... .++...-. ..+.+..++...+.
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~--~~~~~~g~gg~---------~m~~~g~~-~~~~~~~l~v~G~~------- 65 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHY--PNARFIGVAGP---------RMAAEGCE-VLYSMEELSVMGLR------- 65 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcC--CCcEEEEEccH---------HHHhCcCc-cccChHHhhhccHH-------
Confidence 48999999999999999 9999999999 88888885422 12211000 12333333221110
Q ss_pred CCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEE-CCCCchhHH---HHhhccCCCeEEEec-ccHHHHHHHHHhhh
Q 045281 83 PVDLPALAYELGELNNPKLHETLITISKRSNLKAFVI-DFFCSPAFQ---VSSSTLSIPTYYYFT-SGGSGLAALLYLPT 157 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~-D~~~~~~~~---vA~~~lgIP~v~~~~-~~~~~~~~~~~~~~ 157 (481)
.....+.. +.......+.++++. +||+||. |. ..+... .| +.+|||++.+.+ ..+.
T Consensus 66 --~~l~~~~~-~~~~~~~~~~~l~~~----kPd~vi~~g~-~~~~~~~a~aa-~~~gip~v~~i~P~~wa---------- 126 (385)
T TIGR00215 66 --EVLGRLGR-LLKIRKEVVQLAKQA----KPDLLVGIDA-PDFNLTKELKK-KDPGIKIIYYISPQVWA---------- 126 (385)
T ss_pred --HHHHHHHH-HHHHHHHHHHHHHhc----CCCEEEEeCC-CCccHHHHHHH-hhCCCCEEEEeCCcHhh----------
Confidence 01111111 112333555555555 9999995 54 332322 45 999999996531 1110
Q ss_pred hccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhh-hcccEEEEeCchhhhHHHHHHHHcccC
Q 045281 158 LHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQM-AKSAGLIVNTFELLEERAIKAMLEGQC 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~s~~~le~~~~~~~~~~~~ 236 (481)
+++ .+ .+.+ +..+.++. +++. +... +...
T Consensus 127 ------------------w~~--------------~~-----------~r~l~~~~d~v~~-~~~~-e~~~---~~~~-- 156 (385)
T TIGR00215 127 ------------------WRK--------------WR-----------AKKIEKATDFLLA-ILPF-EKAF---YQKK-- 156 (385)
T ss_pred ------------------cCc--------------ch-----------HHHHHHHHhHhhc-cCCC-cHHH---HHhc--
Confidence 000 00 0111 12222222 2322 2211 1111
Q ss_pred CCCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC-----CCcEEE
Q 045281 237 TPGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERS-----GVKFLW 311 (481)
Q Consensus 237 ~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~iw 311 (481)
+ -+..+||.-..+...... ....+..+-+.-.+++++|.+--||....-......++++++.. +..+++
T Consensus 157 --g---~~~~~vGnPv~~~~~~~~-~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi 230 (385)
T TIGR00215 157 --N---VPCRFVGHPLLDAIPLYK-PDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVL 230 (385)
T ss_pred --C---CCEEEECCchhhhccccC-CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEE
Confidence 0 356678843322111000 11111212222223344788777887642223344455554432 334555
Q ss_pred EEeCCCCCCccccccccccCchhhHhhhc-CCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEec----
Q 045281 312 VVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW---- 386 (481)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~---- 386 (481)
.+..+. . ...+ +.+.+.+. ...+.+..+ ....++..+++ +|+-.|..|+ |++.+|+|+|++
T Consensus 231 ~~~~~~-~--------~~~~-~~~~~~~~~~~~v~~~~~-~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~ 296 (385)
T TIGR00215 231 PVVNFK-R--------RLQF-EQIKAEYGPDLQLHLIDG-DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMK 296 (385)
T ss_pred EeCCch-h--------HHHH-HHHHHHhCCCCcEEEECc-hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCC
Confidence 443321 0 0000 11111111 112322222 34568899999 9999999888 999999999999
Q ss_pred cccc---------chhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCc----h-HHHHHHHHHHHHHHHH
Q 045281 387 PLYA---------EQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSE----K-GRAVKERVVEMKEAAA 452 (481)
Q Consensus 387 P~~~---------DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~----~-~~~~~~~a~~l~~~~~ 452 (481)
|+.. .|..|++.++.+ ++...+..+ + .|++.|.+++.+++.|+ + .+++++..+++.+.+
T Consensus 297 pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~--~---~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l- 369 (385)
T TIGR00215 297 PLTFLIARRLVKTDYISLPNILANR-LLVPELLQE--E---CTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRI- 369 (385)
T ss_pred HHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcCC--C---CCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHh-
Confidence 8732 278899999755 888887766 5 99999999999999998 6 344555555555544
Q ss_pred HHHhcCCcHHHHHHHHH
Q 045281 453 AAMRDGGSSRVALDNLV 469 (481)
Q Consensus 453 ~~~~~~g~~~~~~~~l~ 469 (481)
.++|.+.++.+.+.
T Consensus 370 ---~~~~~~~~~a~~i~ 383 (385)
T TIGR00215 370 ---YCNADSERAAQAVL 383 (385)
T ss_pred ---cCCCHHHHHHHHHh
Confidence 35677766666554
No 36
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.68 E-value=1.4e-14 Score=133.46 Aligned_cols=341 Identities=18% Similarity=0.181 Sum_probs=202.9
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhC--CCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCC
Q 045281 3 DTIVLYTS--PGRGHLNSMVELGKLILTY--HPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLD 78 (481)
Q Consensus 3 ~~il~~~~--~~~GH~~P~l~La~~L~~~--G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~ 78 (481)
+||+|.+. .+-||+..++.+|++|.+. | .+|++++..++..-- . .-.+++|+.+|.-..- ..
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~--~~Il~IsG~~~~~~F---~--------~~~gVd~V~LPsl~k~-~~ 75 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLG--FDILIISGGPPAGGF---P--------GPAGVDFVKLPSLIKG-DN 75 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccC--ceEEEEeCCCccCCC---C--------CcccCceEecCceEec-CC
Confidence 38999887 6889999999999999998 7 999999976654321 0 1248999998753111 01
Q ss_pred CCCCCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhh
Q 045281 79 TLRSPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTL 158 (481)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~ 158 (481)
+.....+.-....+..+.....+...++.+ +||++|+|.+ +.|+..= .+ |. ..++...
T Consensus 76 G~~~~~d~~~~l~e~~~~Rs~lil~t~~~f----kPDi~IVd~~-P~Glr~E--L~--pt-------------L~yl~~~ 133 (400)
T COG4671 76 GEYGLVDLDGDLEETKKLRSQLILSTAETF----KPDIFIVDKF-PFGLRFE--LL--PT-------------LEYLKTT 133 (400)
T ss_pred CceeeeecCCCHHHHHHHHHHHHHHHHHhc----CCCEEEEecc-ccchhhh--hh--HH-------------HHHHhhc
Confidence 211111111112233333445556666676 9999999984 4442211 00 00 0011000
Q ss_pred ccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCCC
Q 045281 159 HKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTP 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~ 238 (481)
.+ .+.+-.+++.+........+.+ .......-+..|.+++...|++-. +..++.++
T Consensus 134 ~t------------------~~vL~lr~i~D~p~~~~~~w~~-~~~~~~I~r~yD~V~v~GdP~f~d-----~~~~~~~~ 189 (400)
T COG4671 134 GT------------------RLVLGLRSIRDIPQELEADWRR-AETVRLINRFYDLVLVYGDPDFYD-----PLTEFPFA 189 (400)
T ss_pred CC------------------cceeehHhhhhchhhhccchhh-hHHHHHHHHhheEEEEecCccccC-----hhhcCCcc
Confidence 00 0001111222211111111110 011111223456677766666554 23333333
Q ss_pred CCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHh-CCCc--EEEEEeC
Q 045281 239 GETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLER-SGVK--FLWVVRA 315 (481)
Q Consensus 239 ~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~~--~iw~~~~ 315 (481)
+.-..+++|+|.+....+.. +.+.. .. +++--|+||-|... ...+.+...++|... .+.+ .+.++|.
T Consensus 190 ~~i~~k~~ytG~vq~~~~~~---~~p~~-----~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP 259 (400)
T COG4671 190 PAIRAKMRYTGFVQRSLPHL---PLPPH-----EA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGP 259 (400)
T ss_pred HhhhhheeEeEEeeccCcCC---CCCCc-----CC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCC
Confidence 32236899999992221111 11111 11 34448888888766 356777777777665 4444 3333333
Q ss_pred CCCCCccccccccccCchhhHhhh-----cCCCcEEecccch-HHhhhccCcceEEeccCchhHHHHHhcCCcEEecccc
Q 045281 316 PAPDSVENRSSLESLLPEGFLDRT-----KDRGLVVESWAPQ-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY 389 (481)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~vpq-~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~ 389 (481)
. +|+.-.++. +.+++.+..|-.+ ..++..++. +|+-||+||++|-|.+|+|.+++|+.
T Consensus 260 ~--------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~ 323 (400)
T COG4671 260 F--------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRA 323 (400)
T ss_pred C--------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccC
Confidence 2 565443332 2368888888765 668998998 99999999999999999999999994
Q ss_pred ---cchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCc
Q 045281 390 ---AEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 390 ---~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~ 435 (481)
.||.--|.|+ ++||+--++..+ + +++..+++++...+.-+
T Consensus 324 ~p~eEQliRA~Rl-~~LGL~dvL~pe--~---lt~~~La~al~~~l~~P 366 (400)
T COG4671 324 APREEQLIRAQRL-EELGLVDVLLPE--N---LTPQNLADALKAALARP 366 (400)
T ss_pred CCcHHHHHHHHHH-HhcCcceeeCcc--c---CChHHHHHHHHhcccCC
Confidence 4999999999 589988777776 6 99999999999998733
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.61 E-value=6.6e-14 Score=132.57 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=77.5
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCcEEecccchH-
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERS--GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAPQV- 353 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vpq~- 353 (481)
+.|+|+||..-.. .....+++++... +..+.+++|..... .+.+++... .+|+.+..|++++
T Consensus 171 ~~iLi~~GG~d~~--~~~~~~l~~l~~~~~~~~i~vv~G~~~~~------------~~~l~~~~~~~~~i~~~~~~~~m~ 236 (279)
T TIGR03590 171 RRVLVSFGGADPD--NLTLKLLSALAESQINISITLVTGSSNPN------------LDELKKFAKEYPNIILFIDVENMA 236 (279)
T ss_pred CeEEEEeCCcCCc--CHHHHHHHHHhccccCceEEEEECCCCcC------------HHHHHHHHHhCCCEEEEeCHHHHH
Confidence 3789999966532 2445567777664 45677777764111 122333222 3588899999985
Q ss_pred HhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHH
Q 045281 354 EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAV 398 (481)
Q Consensus 354 ~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~ 398 (481)
++|..+++ +||+|| +|++|++++|+|+|++|+..+|..||+.
T Consensus 237 ~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 237 ELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 79999999 999999 9999999999999999999999999875
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.59 E-value=1.9e-13 Score=136.25 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=69.5
Q ss_pred hHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccccc--------chhhH-----HHHHHHhhceeeeeccCcccccc
Q 045281 352 QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--------EQKMI-----KAVVVEEMKVGLAVTRSEEEERL 418 (481)
Q Consensus 352 q~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~--------DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~~ 418 (481)
-..++..+++ +|+.+|.+++ |++.+|+|+|++|-.. .|..| +..++ .-+++..+... .
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~--~--- 325 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLA-GRELVPELLQE--E--- 325 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhc-CCCcchhhcCC--C---
Confidence 4668899999 9999998887 9999999999995432 22222 22232 11333333333 3
Q ss_pred cCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 045281 419 VSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 419 ~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (481)
.+++.|.+++.++++|++ .+.|+++++++...+ ..+.+.+.++.+.+.+.
T Consensus 326 ~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 326 ATPEKLARALLPLLADGARRQALLEGFTELHQQL-----RCGADERAAQAVLELLK 376 (380)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhh
Confidence 789999999999999987 344555554444443 24555566666655443
No 39
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=3.3e-13 Score=134.59 Aligned_cols=134 Identities=18% Similarity=0.304 Sum_probs=94.3
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCccccccccccCchhhHhhh--cCCCcEEecccchH
Q 045281 277 RSVLLLCFGSLGSFSCKQLKEMAIGLERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT--KDRGLVVESWAPQV 353 (481)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~vpq~ 353 (481)
+.++++.-|+.... ..+..+++++... +.+++++.+.+. . +-+.+.+.. ...|+.+.+|+++.
T Consensus 202 ~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~--------~----~~~~l~~~~~~~~~~v~~~g~~~~~ 267 (380)
T PRK13609 202 KKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE--------A----LKQSLEDLQETNPDALKVFGYVENI 267 (380)
T ss_pred CcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH--------H----HHHHHHHHHhcCCCcEEEEechhhH
Confidence 34777777777532 2355677777654 456666655320 0 001222211 12478899999874
Q ss_pred -HhhhccCcceEEeccCchhHHHHHhcCCcEEec-ccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHH
Q 045281 354 -EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW-PLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSEL 431 (481)
Q Consensus 354 -~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~i 431 (481)
+++..+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+. ..|+|+.. -+.+++.+++.++
T Consensus 268 ~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~-~~G~~~~~---------~~~~~l~~~i~~l 335 (380)
T PRK13609 268 DELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFE-RKGAAVVI---------RDDEEVFAKTEAL 335 (380)
T ss_pred HHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHH-hCCcEEEE---------CCHHHHHHHHHHH
Confidence 79999998 99999988999999999999985 67777888988885 45887753 2568999999999
Q ss_pred hcCch
Q 045281 432 MDSEK 436 (481)
Q Consensus 432 l~~~~ 436 (481)
++|++
T Consensus 336 l~~~~ 340 (380)
T PRK13609 336 LQDDM 340 (380)
T ss_pred HCCHH
Confidence 99876
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.52 E-value=2.7e-15 Score=131.30 Aligned_cols=136 Identities=16% Similarity=0.268 Sum_probs=97.7
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHHhC--CCcEEEEEeCCCCCCccccccccccCchhhHhhhcC--CCcEEecccc-h
Q 045281 279 VLLLCFGSLGSFSC-KQLKEMAIGLERS--GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKD--RGLVVESWAP-Q 352 (481)
Q Consensus 279 ~v~vs~GS~~~~~~-~~~~~~~~al~~~--~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~vp-q 352 (481)
+|+|+.||.....- +.+..++..+... ...++|++|.... ......+.. .++.+.+|++ .
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~--------------~~~~~~~~~~~~~v~~~~~~~~m 66 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY--------------EELKIKVENFNPNVKVFGFVDNM 66 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC--------------HHHCCCHCCTTCCCEEECSSSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH--------------HHHHHHHhccCCcEEEEechhhH
Confidence 48899998873211 2233344444332 4678888876410 111111111 5889999999 7
Q ss_pred HHhhhccCcceEEeccCchhHHHHHhcCCcEEeccccc----chhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHH
Q 045281 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA----EQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRV 428 (481)
Q Consensus 353 ~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~----DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av 428 (481)
.+++..+++ +|||||.||++|++++|+|+|++|... +|..||..+++ .|+|+.+... . .+.+.|.++|
T Consensus 67 ~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~--~---~~~~~L~~~i 138 (167)
T PF04101_consen 67 AELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDES--E---LNPEELAEAI 138 (167)
T ss_dssp HHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECC--C----SCCCHHHHH
T ss_pred HHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCcc--c---CCHHHHHHHH
Confidence 889999999 999999999999999999999999988 99999999964 5999999887 5 7899999999
Q ss_pred HHHhcCch
Q 045281 429 SELMDSEK 436 (481)
Q Consensus 429 ~~il~~~~ 436 (481)
.+++.++.
T Consensus 139 ~~l~~~~~ 146 (167)
T PF04101_consen 139 EELLSDPE 146 (167)
T ss_dssp HCHCCCHH
T ss_pred HHHHcCcH
Confidence 99998886
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.43 E-value=6e-11 Score=118.43 Aligned_cols=165 Identities=13% Similarity=0.224 Sum_probs=108.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHH-Hh-CCCcEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCcEEecccch
Q 045281 276 SRSVLLLCFGSLGSFSCKQLKEMAIGL-ER-SGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAPQ 352 (481)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~al-~~-~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~vpq 352 (481)
++++|++..|+... ...+..+++++ +. .+..++++.+.+. . +-+.+.+.. ...++.+.+|+++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~----l~~~l~~~~~~~~~v~~~G~~~~ 266 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------E----LKRSLTAKFKSNENVLILGYTKH 266 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------H----HHHHHHHHhccCCCeEEEeccch
Confidence 34488888888762 13344455553 32 2456666655420 0 001222222 2347888899976
Q ss_pred -HHhhhccCcceEEeccCchhHHHHHhcCCcEEec-ccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHH
Q 045281 353 -VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW-PLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSE 430 (481)
Q Consensus 353 -~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~-P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~ 430 (481)
.+++..+++ +|+..|..|+.||+++|+|+|++ |..+.|..|+..+. +.|+|+.+. +.+++.++|.+
T Consensus 267 ~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~-~~G~g~~~~---------~~~~l~~~i~~ 334 (391)
T PRK13608 267 MNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFE-EKGFGKIAD---------TPEEAIKIVAS 334 (391)
T ss_pred HHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHH-hCCcEEEeC---------CHHHHHHHHHH
Confidence 469999999 99988888999999999999998 77777789999995 559997643 55889999999
Q ss_pred HhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 431 LMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 431 il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
+++|++ .++|++++++++ ...+....++.+.+.+.+
T Consensus 335 ll~~~~~~~~m~~~~~~~~--------~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 335 LTNGNEQLTNMISTMEQDK--------IKYATQTICRDLLDLIGH 371 (391)
T ss_pred HhcCHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHhhh
Confidence 998876 233444443332 234445556666665544
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.41 E-value=5.2e-11 Score=118.67 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=69.4
Q ss_pred CCcEEecccch-HHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchh-hHHHHHHHhhceeeeeccCccccccc
Q 045281 342 RGLVVESWAPQ-VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQK-MIKAVVVEEMKVGLAVTRSEEEERLV 419 (481)
Q Consensus 342 ~~~~~~~~vpq-~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~-~na~~v~~~~G~G~~l~~~~~~~~~~ 419 (481)
.++.+.+|+++ .+++..+|+ +|+.+|-+|++||+++|+|+|+.+....|. .|+..+.+ .|.|+.+ .
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~--~------- 332 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS--E------- 332 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec--C-------
Confidence 46778899986 568999999 999999999999999999999998766675 68888854 5998754 2
Q ss_pred CHHHHHHHHHHHhcC-ch
Q 045281 420 SAAELEQRVSELMDS-EK 436 (481)
Q Consensus 420 ~~~~l~~av~~il~~-~~ 436 (481)
++++|.+++.+++.| ++
T Consensus 333 ~~~~la~~i~~ll~~~~~ 350 (382)
T PLN02605 333 SPKEIARIVAEWFGDKSD 350 (382)
T ss_pred CHHHHHHHHHHHHcCCHH
Confidence 669999999999987 54
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.35 E-value=7.1e-10 Score=110.33 Aligned_cols=167 Identities=19% Similarity=0.160 Sum_probs=102.1
Q ss_pred CCeEecc-ccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC----CCcEEEEEeCCC
Q 045281 243 PPFYCIG-PVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERS----GVKFLWVVRAPA 317 (481)
Q Consensus 243 ~~~~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~----~~~~iw~~~~~~ 317 (481)
-++.+|| |+...-.... . . -++ ++.++|.+--||........+..++++++.. +..|++.+.++.
T Consensus 180 ~k~~~vGnPv~d~l~~~~--~--~----~l~--~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~ 249 (396)
T TIGR03492 180 VRASYLGNPMMDGLEPPE--R--K----PLL--TGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL 249 (396)
T ss_pred CeEEEeCcCHHhcCcccc--c--c----ccC--CCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC
Confidence 4789999 5544322110 1 1 122 2234788888988644444455666666653 567888774321
Q ss_pred CCCccccccccccCch-hhHh---------hhcCCCcEEecccc-hHHhhhccCcceEEeccCchhHHHHHhcCCcEEec
Q 045281 318 PDSVENRSSLESLLPE-GFLD---------RTKDRGLVVESWAP-QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 318 ~~~~~~~~~~~~~l~~-~~~~---------~~~~~~~~~~~~vp-q~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~ 386 (481)
.. ......+.+ ++.. .....++.+..+.. ..+++..+++ +|+-.|..| .|+...|+|+|++
T Consensus 250 ~~-----~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ili 321 (396)
T TIGR03492 250 SL-----EKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQL 321 (396)
T ss_pred CH-----HHHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEE
Confidence 00 000000000 0000 01112344545543 4669999999 999999766 9999999999999
Q ss_pred ccccchhhHHHHHHHhh----ceeeeeccCcccccccCHHHHHHHHHHHhcCch
Q 045281 387 PLYAEQKMIKAVVVEEM----KVGLAVTRSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 387 P~~~DQ~~na~~v~~~~----G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
|+-..|. |+...+ +. |.++.+... +.+.|.+++.+++.|++
T Consensus 322 p~~~~q~-na~~~~-~~~~l~g~~~~l~~~-------~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 322 PGKGPQF-TYGFAE-AQSRLLGGSVFLASK-------NPEQAAQVVRQLLADPE 366 (396)
T ss_pred eCCCCHH-HHHHHH-hhHhhcCCEEecCCC-------CHHHHHHHHHHHHcCHH
Confidence 9888887 887663 42 666666653 55999999999999876
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.28 E-value=9.9e-09 Score=101.01 Aligned_cols=109 Identities=22% Similarity=0.229 Sum_probs=75.9
Q ss_pred CCCcEEecccchHH---hhhccCcceEEeccC----chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vtHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
..|+.+.+|+++.+ ++..+++ +|+++. .++++||+++|+|+|+.+..+ +...+ +.-+.|..+..
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~~~-- 316 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLVEP-- 316 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEcCC--
Confidence 45888999998655 7888998 887654 378999999999999987654 44445 34488888876
Q ss_pred ccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 045281 414 EEERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVES 471 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (481)
-+.+++.+++.+++.|++ .+.+.+++++.. +..+.....+++++.
T Consensus 317 -----~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 362 (364)
T cd03814 317 -----GDAEAFAAALAALLADPELRRRMAARARAEA--------ERRSWEAFLDNLLEA 362 (364)
T ss_pred -----CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--------hhcCHHHHHHHHHHh
Confidence 377889999999999887 233333333322 134444555565543
No 45
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.26 E-value=4.7e-13 Score=113.31 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=79.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCC-CCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPP-VSGLLDTLRSP 83 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~ 83 (481)
|+|++.|+.||++|+++||++|++|| |+|+++++. .++..+++ .|+.|+.++.. ..+ ...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rG--h~V~~~~~~-------~~~~~v~~-----~Gl~~~~~~~~~~~~--~~~--- 61 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRG--HEVRLATPP-------DFRERVEA-----AGLEFVPIPGDSRLP--RSL--- 61 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT---EEEEEETG-------GGHHHHHH-----TT-EEEESSSCGGGG--HHH---
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccC--CeEEEeecc-------cceecccc-----cCceEEEecCCcCcC--ccc---
Confidence 78999999999999999999999999 999999965 55656665 49999998654 111 000
Q ss_pred CChHHHHHHHHHH--hhHHHHHHHHHhh--------ccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHH
Q 045281 84 VDLPALAYELGEL--NNPKLHETLITIS--------KRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGS 147 (481)
Q Consensus 84 ~~~~~~~~~~~~~--~~~~l~~~l~~~~--------~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~ 147 (481)
.....+...... ....+.+.+++.. ....+|+++.+.....+..+| |++|||++.....+.+
T Consensus 62 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~va-E~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 62 -EPLANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVA-EQLGIPGVANRLFPWF 133 (139)
T ss_dssp -HHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHH-HHHTS-EEEEESSGGG
T ss_pred -chhhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeE-hhhCchHHHHhhCCcC
Confidence 011111111111 1222333333322 124688888898777788899 9999999988777654
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.26 E-value=1.8e-08 Score=103.23 Aligned_cols=138 Identities=21% Similarity=0.243 Sum_probs=90.1
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHH---
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVE--- 354 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~--- 354 (481)
.+++..|++. ....+..++++++.. +..++ ++|.+. ..+.+.+.....++.+.+++++.+
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~-ivG~G~-------------~~~~l~~~~~~~~V~f~G~v~~~ev~~ 327 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLA-FVGDGP-------------YREELEKMFAGTPTVFTGMLQGDELSQ 327 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEE-EEeCCh-------------HHHHHHHHhccCCeEEeccCCHHHHHH
Confidence 5556668775 233466677787775 34444 455431 112333334455788989998544
Q ss_pred hhhccCcceEEeccC----chhHHHHHhcCCcEEecccccchhhHHHHHHHh---hceeeeeccCcccccccCHHHHHHH
Q 045281 355 VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEE---MKVGLAVTRSEEEERLVSAAELEQR 427 (481)
Q Consensus 355 lL~~~~~~~~vtHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~---~G~G~~l~~~~~~~~~~~~~~l~~a 427 (481)
++..+++ +|.-.. -.++.||+++|+|+|+....+ ....+ +. -+.|..++.. +.+++.++
T Consensus 328 ~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv-~~~~~~~~G~lv~~~-------d~~~la~~ 393 (465)
T PLN02871 328 AYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDII-PPDQEGKTGFLYTPG-------DVDDCVEK 393 (465)
T ss_pred HHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhh-hcCCCCCceEEeCCC-------CHHHHHHH
Confidence 7888898 775433 346889999999999876532 22233 32 3778888774 77999999
Q ss_pred HHHHhcCch-HHHHHHHHHH
Q 045281 428 VSELMDSEK-GRAVKERVVE 446 (481)
Q Consensus 428 v~~il~~~~-~~~~~~~a~~ 446 (481)
+.++++|++ .+.|.+++++
T Consensus 394 i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 394 LETLLADPELRERMGAAARE 413 (465)
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 999999876 3445555544
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.20 E-value=4.5e-08 Score=98.01 Aligned_cols=90 Identities=17% Similarity=0.233 Sum_probs=65.9
Q ss_pred CCcEEecccchHH---hhhccCcceEEecc---C-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcc
Q 045281 342 RGLVVESWAPQVE---VLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 342 ~~~~~~~~vpq~~---lL~~~~~~~~vtHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
.++.+.+|+|+.+ ++..+++ +++.. | -.++.||+++|+|+|+....+ ....+ ++-+.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i-~~~~~g~~~~~--- 352 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIV-VDGVTGLLVDP--- 352 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHc-cCCCCeEEeCC---
Confidence 5788999999765 5888888 77442 2 358999999999999876543 44455 45468888876
Q ss_pred cccccCHHHHHHHHHHHhcCch-HHHHHHHHH
Q 045281 415 EERLVSAAELEQRVSELMDSEK-GRAVKERVV 445 (481)
Q Consensus 415 ~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~ 445 (481)
-+.+++.+++.++++|++ .+.+.++++
T Consensus 353 ----~~~~~l~~~i~~l~~~~~~~~~~~~~a~ 380 (398)
T cd03800 353 ----RDPEALAAALRRLLTDPALRRRLSRAGL 380 (398)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 378999999999998876 233444433
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.14 E-value=8.8e-08 Score=94.82 Aligned_cols=141 Identities=21% Similarity=0.252 Sum_probs=86.2
Q ss_pred cEEEEecCCCCC-CCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCccccccccccCchhhHh---hhcCCCcEEecccch
Q 045281 278 SVLLLCFGSLGS-FSCKQLKEMAIGLERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLD---RTKDRGLVVESWAPQ 352 (481)
Q Consensus 278 ~~v~vs~GS~~~-~~~~~~~~~~~al~~~-~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~vpq 352 (481)
..+++..|+... ...+.+...+..+... +..+ +.++.+.. ...+.+ .....|+.+.+++++
T Consensus 220 ~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l-~i~G~~~~-------------~~~~~~~~~~~~~~~v~~~g~~~~ 285 (394)
T cd03794 220 KFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRF-LIVGDGPE-------------KEELKELAKALGLDNVTFLGRVPK 285 (394)
T ss_pred cEEEEEecCcccccCHHHHHHHHHHHhhcCCeEE-EEeCCccc-------------HHHHHHHHHHcCCCcEEEeCCCCh
Confidence 477777888763 2334444444444333 3444 33443310 012222 233468888899986
Q ss_pred HH---hhhccCcceEEeccC---------chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccC
Q 045281 353 VE---VLNHESVGGFVTHCG---------WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVS 420 (481)
Q Consensus 353 ~~---lL~~~~~~~~vtHgG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (481)
.+ ++..+++ +|.... -+++.||+.+|+|+|+.+..+.+... ...+.|..++.. +
T Consensus 286 ~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~-----~~~~~g~~~~~~-------~ 351 (394)
T cd03794 286 EELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV-----EEAGAGLVVPPG-------D 351 (394)
T ss_pred HHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh-----ccCCcceEeCCC-------C
Confidence 54 6788888 654322 23479999999999999887655443 222677777773 7
Q ss_pred HHHHHHHHHHHhcCch-HHHHHHHHHH
Q 045281 421 AAELEQRVSELMDSEK-GRAVKERVVE 446 (481)
Q Consensus 421 ~~~l~~av~~il~~~~-~~~~~~~a~~ 446 (481)
.+++.+++.+++.|++ .+.+++++++
T Consensus 352 ~~~l~~~i~~~~~~~~~~~~~~~~~~~ 378 (394)
T cd03794 352 PEALAAAILELLDDPEERAEMGENGRR 378 (394)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 8999999999998876 3334444433
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.12 E-value=1.9e-07 Score=91.63 Aligned_cols=82 Identities=23% Similarity=0.285 Sum_probs=61.9
Q ss_pred CCCcEEecccchHH---hhhccCcceEEe----ccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccC
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVT----HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vt----HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
..++.+.+|+++.+ ++..+++ +|. ..|. .++.||+++|+|+|+.+.. .+...+ +.-+.|..+...
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i-~~~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELV-RDGVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHh-cCCCcEEEECCC
Confidence 45888999997554 6888888 663 2344 4789999999999997653 345556 342478888773
Q ss_pred cccccccCHHHHHHHHHHHhcCch
Q 045281 413 EEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 413 ~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
+.+++.+++.++++|++
T Consensus 315 -------d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 315 -------DAEDLAAALERLIDDPD 331 (359)
T ss_pred -------CHHHHHHHHHHHHhChH
Confidence 78999999999999876
No 50
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.11 E-value=6.8e-07 Score=89.66 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=64.7
Q ss_pred CCCcEEecccchHH---hhhccCcceEEec-cCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccc
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVTH-CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vtH-gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
..++.+.+++|+.+ ++..+++-++-+. .|. .++.||+++|+|+|+... ......+ +.-..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i-~~~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVI-TDGENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhc-ccCCceEEcCC----
Confidence 45788999999765 6778888323232 233 488999999999998643 3444555 34246887776
Q ss_pred ccccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 045281 416 ERLVSAAELEQRVSELMDSEK-GRAVKERVVE 446 (481)
Q Consensus 416 ~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~ 446 (481)
.+++++.+++.++++|++ .+.+.+++++
T Consensus 351 ---~d~~~la~~i~~ll~~~~~~~~l~~~ar~ 379 (396)
T cd03818 351 ---FDPDALAAAVIELLDDPARRARLRRAARR 379 (396)
T ss_pred ---CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 378999999999999886 2334444433
No 51
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.07 E-value=2.9e-07 Score=91.23 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=73.3
Q ss_pred CCcEEecccch-HHhhhccCcceEEec----cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccc
Q 045281 342 RGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEE 416 (481)
Q Consensus 342 ~~~~~~~~vpq-~~lL~~~~~~~~vtH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
.++.+.++.++ ..++..+++ +|.- |.-.++.||+.+|+|+|+... ...+..+ +.-..|..++.
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~~~----- 320 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLVDV----- 320 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEcCC-----
Confidence 46878888775 568888988 6632 334599999999999999644 3455555 34246777766
Q ss_pred cccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 045281 417 RLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 417 ~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (481)
-+.+++.+++.++++|++ .+.+++++++.. .+.-+....++++.+.++
T Consensus 321 --~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~-------~~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 321 --GDVEAMAEYALSLLEDDELWQEFSRAARNRA-------AERFDSERIVPQYEALYR 369 (371)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHH
Confidence 378999999999998876 334444444432 123444455555555443
No 52
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.04 E-value=2.2e-07 Score=93.61 Aligned_cols=91 Identities=21% Similarity=0.368 Sum_probs=60.8
Q ss_pred CCcEEe-cccchHH---hhhccCcceEEe-c---cC---chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeec
Q 045281 342 RGLVVE-SWAPQVE---VLNHESVGGFVT-H---CG---WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (481)
Q Consensus 342 ~~~~~~-~~vpq~~---lL~~~~~~~~vt-H---gG---~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
.++++. +|+|..+ +|..+++ +|. + -| -++++||+++|+|+|+... ......+ +.-+.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEEC
Confidence 466654 5887544 6888998 663 1 12 3479999999999999654 2344455 4535788762
Q ss_pred cCcccccccCHHHHHHHHHHHhcC---ch-HHHHHHHHHHHH
Q 045281 411 RSEEEERLVSAAELEQRVSELMDS---EK-GRAVKERVVEMK 448 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~av~~il~~---~~-~~~~~~~a~~l~ 448 (481)
+.+++++++.++++| ++ .++|.+++++..
T Consensus 367 ---------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 ---------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ---------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 458999999999998 54 445555555444
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.04 E-value=6.5e-07 Score=87.58 Aligned_cols=83 Identities=24% Similarity=0.314 Sum_probs=63.2
Q ss_pred cCCCcEEecccchH---HhhhccCcceEEe----ccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccC
Q 045281 340 KDRGLVVESWAPQV---EVLNHESVGGFVT----HCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 340 ~~~~~~~~~~vpq~---~lL~~~~~~~~vt----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
...++.+.+++++. .++..+++ +|. -|..+++.||+.+|+|+|+.+. ..+...+ +.-+.|..++.
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~~~- 325 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLVPP- 325 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEeCC-
Confidence 34688898999744 47888888 663 2456789999999999999766 3345555 33377887777
Q ss_pred cccccccCHHHHHHHHHHHhcCch
Q 045281 413 EEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 413 ~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
.+++++.+++.+++.|++
T Consensus 326 ------~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 326 ------GDPEALAEAILRLLDDPE 343 (374)
T ss_pred ------CCHHHHHHHHHHHHcChH
Confidence 378999999999998886
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.04 E-value=1.3e-06 Score=85.20 Aligned_cols=320 Identities=13% Similarity=0.072 Sum_probs=163.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
+|++++....|+...+..|+++|.+.| |+|++++....... .. ...++.+..++... . ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g--~~v~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~-----~--~~ 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAG--YEVHVVAPPGDELE------EL-----EALGVKVIPIPLDR-----R--GI 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcC--CeeEEEecCCCccc------cc-----ccCCceEEeccccc-----c--cc
Confidence 367777778899999999999999999 99999986533110 01 12466666665331 0 00
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCch--hHHHHhhccCCCeEEEecccHHHHHHHHHhhhhccC
Q 045281 84 VDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSP--AFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLHKN 161 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~--~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 161 (481)
.....+. ....+...+++. +||+|++...... +...+ +..+.|.+...........
T Consensus 61 -~~~~~~~-----~~~~~~~~~~~~----~~dvv~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~----------- 118 (359)
T cd03808 61 -NPFKDLK-----ALLRLYRLLRKE----RPDIVHTHTPKPGILGRLAA-RLAGVPKVIYTVHGLGFVF----------- 118 (359)
T ss_pred -ChHhHHH-----HHHHHHHHHHhc----CCCEEEEccccchhHHHHHH-HHcCCCCEEEEecCcchhh-----------
Confidence 1111111 112344555554 9999998764332 23344 5466665544332211000
Q ss_pred CCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCCCCCC
Q 045281 162 TTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCTPGET 241 (481)
Q Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~ 241 (481)
.. .. . ......... ....+..+.++..+-...+. +.+....+ +
T Consensus 119 --------------~~--~~---------~---~~~~~~~~~--~~~~~~~d~ii~~s~~~~~~-----~~~~~~~~--~ 161 (359)
T cd03808 119 --------------TS--GG---------L---KRRLYLLLE--RLALRFTDKVIFQNEDDRDL-----ALKLGIIK--K 161 (359)
T ss_pred --------------cc--ch---------h---HHHHHHHHH--HHHHhhccEEEEcCHHHHHH-----HHHhcCCC--c
Confidence 00 00 0 000011111 11234456777665544332 11111100 0
Q ss_pred CCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCC-CCHHHHHHHHHHHHh--CCCcEEEEEeCCCC
Q 045281 242 LPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGS-FSCKQLKEMAIGLER--SGVKFLWVVRAPAP 318 (481)
Q Consensus 242 ~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~-~~~~~~~~~~~al~~--~~~~~iw~~~~~~~ 318 (481)
...+..++......... ..... .+++..+++..|+... ...+.+.+.+..+.. .+..+ ++++.+..
T Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l-~i~G~~~~ 230 (359)
T cd03808 162 KKTVLIPGSGVDLDRFS---PSPEP-------IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRL-LLVGDGDE 230 (359)
T ss_pred CceEEecCCCCChhhcC---ccccc-------cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEE-EEEcCCCc
Confidence 02333333222211100 00000 1223477777888762 233444444444443 23344 34444311
Q ss_pred CCccccccccccCchh-hHhhhcCCCcEEecccch-HHhhhccCcceEEeccC----chhHHHHHhcCCcEEecccccch
Q 045281 319 DSVENRSSLESLLPEG-FLDRTKDRGLVVESWAPQ-VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQ 392 (481)
Q Consensus 319 ~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~vpq-~~lL~~~~~~~~vtHgG----~gs~~eal~~GvP~v~~P~~~DQ 392 (481)
. ...... ........++.+.++..+ ..++..+++ +|.... -+++.||+.+|+|+|+.+..+
T Consensus 231 ~---------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~-- 297 (359)
T cd03808 231 E---------NPAAILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG-- 297 (359)
T ss_pred c---------hhhHHHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC--
Confidence 1 000000 111112346777777543 568889998 775443 478999999999999976543
Q ss_pred hhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCch
Q 045281 393 KMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 393 ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
+...+ +.-+.|..++.. +++++.+++.+++.|++
T Consensus 298 --~~~~i-~~~~~g~~~~~~-------~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 298 --CREAV-IDGVNGFLVPPG-------DAEALADAIERLIEDPE 331 (359)
T ss_pred --chhhh-hcCcceEEECCC-------CHHHHHHHHHHHHhCHH
Confidence 33444 333678877763 78999999999998876
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.04 E-value=2.7e-06 Score=85.79 Aligned_cols=115 Identities=12% Similarity=0.108 Sum_probs=78.1
Q ss_pred CCcEEecccchH---HhhhccCcceEEeccCc------hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccC
Q 045281 342 RGLVVESWAPQV---EVLNHESVGGFVTHCGW------NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 342 ~~~~~~~~vpq~---~lL~~~~~~~~vtHgG~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
.|+.+.+|+|+. +++..+++.++.+..+. +.+.|++.+|+|+|+....+. .....+ + +.|+.++..
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~~~~ 358 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCVEPE 358 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEeCCC
Confidence 478888999864 47888898555555432 236899999999999875432 112233 3 788888774
Q ss_pred cccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 413 EEEERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 413 ~~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
+.+++++++.++++|++ .+.|++++++.. ++.-+....++.+++.+++.
T Consensus 359 -------d~~~la~~i~~l~~~~~~~~~~~~~a~~~~-------~~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 359 -------SVEALVAAIAALARQALLRPKLGTVAREYA-------ERTLDKENVLRQFIADIRGL 408 (412)
T ss_pred -------CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHHcCHHHHHHHHHHHHHHH
Confidence 78999999999998876 344444444433 23455556677777766654
No 56
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.03 E-value=8e-07 Score=87.49 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=65.8
Q ss_pred CCCcEEecccchHH---hhhccCcceEEecc----CchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vtHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
..++.+.+++|+.+ ++..+++ +|... ...++.||+.+|+|+|+... ...+..+ +.-+.|..++..
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i-~~~~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLV-ADGENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhhe-ecCceeEEeCCC-
Confidence 35888999998754 6888888 66443 34789999999999999754 3345555 343678888775
Q ss_pred ccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHH
Q 045281 414 EEERLVSAAELEQRVSELMDSEK-GRAVKERVVEMK 448 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~ 448 (481)
+. ++.+++.+++++++ .+++.+++++..
T Consensus 330 ------~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~ 358 (374)
T cd03817 330 ------DE-ALAEALLRLLQDPELRRRLSKNAEESA 358 (374)
T ss_pred ------CH-HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 22 89999999999887 333444444443
No 57
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.99 E-value=2.7e-07 Score=93.53 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=62.7
Q ss_pred cEEecccch-HHhhhccCcceEEec-----cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccccc
Q 045281 344 LVVESWAPQ-VEVLNHESVGGFVTH-----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEER 417 (481)
Q Consensus 344 ~~~~~~vpq-~~lL~~~~~~~~vtH-----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 417 (481)
+++.+.... ..++..+++ ++.. +|..++.||+++|+|+|+-|..+++......+. +.|+++. .
T Consensus 304 v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~-~~g~~~~--~------ 372 (425)
T PRK05749 304 VLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLL-QAGAAIQ--V------ 372 (425)
T ss_pred EEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHH-HCCCeEE--E------
Confidence 444443333 457788887 4331 344469999999999999999888888877773 3355443 3
Q ss_pred ccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 045281 418 LVSAAELEQRVSELMDSEK-GRAVKERVVEM 447 (481)
Q Consensus 418 ~~~~~~l~~av~~il~~~~-~~~~~~~a~~l 447 (481)
-+++++.+++.++++|++ .+.|.+++++.
T Consensus 373 -~d~~~La~~l~~ll~~~~~~~~m~~~a~~~ 402 (425)
T PRK05749 373 -EDAEDLAKAVTYLLTDPDARQAYGEAGVAF 402 (425)
T ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 266999999999999887 33444444443
No 58
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=4.1e-08 Score=88.58 Aligned_cols=134 Identities=16% Similarity=0.227 Sum_probs=99.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCcEEecccc-hHHhh
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAP-QVEVL 356 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vp-q~~lL 356 (481)
-|+|++|..- +....-+++..|.+.++.+-.++++.... + ..++.++. .+|+.+.-... ...|+
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~p~-----------l-~~l~k~~~~~~~i~~~~~~~dma~LM 225 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSNPT-----------L-KNLRKRAEKYPNINLYIDTNDMAELM 225 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCCcc-----------h-hHHHHHHhhCCCeeeEecchhHHHHH
Confidence 7999998654 45566778888888887777777743111 1 23333333 34666555554 56699
Q ss_pred hccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCch
Q 045281 357 NHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 357 ~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
..+++ .|+-|| .|+.|++..|+|.+++|+...|---|... +.+|+-..+.-. ++.+....-+.++..|..
T Consensus 226 ke~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l~~~------l~~~~~~~~~~~i~~d~~ 295 (318)
T COG3980 226 KEADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQLGYH------LKDLAKDYEILQIQKDYA 295 (318)
T ss_pred Hhcch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhccCC------CchHHHHHHHHHhhhCHH
Confidence 99999 999877 58999999999999999999999999999 567887777653 667777777788888886
No 59
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.97 E-value=6.2e-07 Score=88.19 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=89.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCC-CcEEEEEeCCCCCCccccccccccCchhhHh----hhcCCCcEEecccchH
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERSG-VKFLWVVRAPAPDSVENRSSLESLLPEGFLD----RTKDRGLVVESWAPQV 353 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~vpq~ 353 (481)
.+++..|+.. .......++++++... ..+++ ++.+. ....+.+ .....|+.+.+|+|+.
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i-~G~g~-------------~~~~~~~~~~~~~~~~~V~~~g~v~~~ 255 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVI-VGEGP-------------LEAELEALAAALGLLDRVRFLGRLDDE 255 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhccCcEEEE-EeCCh-------------hHHHHHHHHHhcCCcceEEEcCCCCHH
Confidence 6667778875 2334666777777766 33333 33321 0111211 1224689999999975
Q ss_pred ---HhhhccCcceEEe---ccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHH
Q 045281 354 ---EVLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQ 426 (481)
Q Consensus 354 ---~lL~~~~~~~~vt---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~ 426 (481)
.++..+++.++-+ +.|. .++.||+.+|+|+|+....+.+..... +. +.|..++. -+.+++.+
T Consensus 256 ~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-------~d~~~~~~ 324 (357)
T cd03795 256 EKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-------GDPAALAE 324 (357)
T ss_pred HHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-------CCHHHHHH
Confidence 4777788833333 2344 478999999999999766555543322 13 67887776 37899999
Q ss_pred HHHHHhcCch-HHHHHHHHHH
Q 045281 427 RVSELMDSEK-GRAVKERVVE 446 (481)
Q Consensus 427 av~~il~~~~-~~~~~~~a~~ 446 (481)
++.++++|++ .+.+++++++
T Consensus 325 ~i~~l~~~~~~~~~~~~~~~~ 345 (357)
T cd03795 325 AIRRLLEDPELRERLGEAARE 345 (357)
T ss_pred HHHHHHHCHHHHHHHHHHHHH
Confidence 9999999887 3334444433
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.93 E-value=4.6e-06 Score=81.80 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=61.7
Q ss_pred CCCcEEecccchH---HhhhccCcceEEe----ccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 341 DRGLVVESWAPQV---EVLNHESVGGFVT----HCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~~~~~~~vpq~---~lL~~~~~~~~vt----HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
..|+.+.+++++. .++..+++ +|. -|..+++.||+.+|+|+|+.+..+ ....+ +..+.|..++.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~-~~~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEII-TDGENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHh-cCCcceeEECC--
Confidence 4588899999874 46778888 552 245578999999999999876543 33445 34356777776
Q ss_pred ccccccCHHHHHHHHHHHhcCch
Q 045281 414 EEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~ 436 (481)
-+.+++.+++.+++.++.
T Consensus 329 -----~~~~~l~~~i~~~~~~~~ 346 (377)
T cd03798 329 -----GDPEALAEAILRLLADPW 346 (377)
T ss_pred -----CCHHHHHHHHHHHhcCcH
Confidence 488999999999998876
No 61
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.89 E-value=1.8e-06 Score=83.04 Aligned_cols=295 Identities=13% Similarity=0.144 Sum_probs=155.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHHHH
Q 045281 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPALA 90 (481)
Q Consensus 11 ~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (481)
...-|+.-+..+.++|.++| |+|.+.+-... ...+.++. -++.+..+... + .+....+
T Consensus 8 ~~p~hvhfFk~~I~eL~~~G--heV~it~R~~~-----~~~~LL~~-----yg~~y~~iG~~------g----~~~~~Kl 65 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKRG--HEVLITARDKD-----ETEELLDL-----YGIDYIVIGKH------G----DSLYGKL 65 (335)
T ss_pred CCchHHHHHHHHHHHHHhCC--CEEEEEEeccc-----hHHHHHHH-----cCCCeEEEcCC------C----CCHHHHH
Confidence 34449999999999999999 99999885432 23334443 37777777532 1 1333444
Q ss_pred HHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhccCCCCcccccC
Q 045281 91 YELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLHKNTTKSFRELG 170 (481)
Q Consensus 91 ~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (481)
.....+ ...+..++++. +||++|+-. +..+..+| ..+|||+|.+.-....... .....++.+.
T Consensus 66 ~~~~~R-~~~l~~~~~~~----~pDv~is~~-s~~a~~va-~~lgiP~I~f~D~e~a~~~---------~~Lt~Pla~~- 128 (335)
T PF04007_consen 66 LESIER-QYKLLKLIKKF----KPDVAISFG-SPEAARVA-FGLGIPSIVFNDTEHAIAQ---------NRLTLPLADV- 128 (335)
T ss_pred HHHHHH-HHHHHHHHHhh----CCCEEEecC-cHHHHHHH-HHhCCCeEEEecCchhhcc---------ceeehhcCCe-
Confidence 443333 33444555555 999999764 56677799 9999999988765422100 0001111100
Q ss_pred CcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEE-EeCchhhhHHHHHHHHcccCCCCCCCCCeEecc
Q 045281 171 STLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLI-VNTFELLEERAIKAMLEGQCTPGETLPPFYCIG 249 (481)
Q Consensus 171 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~le~~~~~~~~~~~~~~~~~~~~~~~vG 249 (481)
...| ..+.+. + .........+. .+.+.+ +.++-
T Consensus 129 ---i~~P-----------~~~~~~-------~---~~~~G~~~~i~~y~G~~E----------------------~ayl~ 162 (335)
T PF04007_consen 129 ---IITP-----------EAIPKE-------F---LKRFGAKNQIRTYNGYKE----------------------LAYLH 162 (335)
T ss_pred ---eECC-----------cccCHH-------H---HHhcCCcCCEEEECCeee----------------------EEeec
Confidence 0001 000000 0 00000000111 222221 22232
Q ss_pred ccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCC----CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccc
Q 045281 250 PVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLG----SFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRS 325 (481)
Q Consensus 250 pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~----~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~ 325 (481)
|+ +.+++..+-+... +.+.|+|-+-+.. ......+..+++.|++.+.. |+.+....
T Consensus 163 ~F----------~Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~-------- 222 (335)
T PF04007_consen 163 PF----------KPDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYE-------- 222 (335)
T ss_pred CC----------CCChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCc--------
Confidence 32 1222333333311 2347777776643 22334567799999998877 44443320
Q ss_pred cccccCchhhHhhhcCCCcEE-ecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhc
Q 045281 326 SLESLLPEGFLDRTKDRGLVV-ESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMK 404 (481)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~~~~-~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G 404 (481)
+ . ..+.+++ ++.+ ..-+...+||.++++ +|+=|| ....||...|+|.|.+ +-++-...-+.+.+. |
T Consensus 223 ~----~-~~~~~~~---~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-G 289 (335)
T PF04007_consen 223 D----Q-RELFEKY---GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-G 289 (335)
T ss_pred c----h-hhHHhcc---CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-C
Confidence 0 1 1111222 2322 245555689999999 999877 7888999999999975 323322222334344 5
Q ss_pred eeeeeccCcccccccCHHHHHHHHHHHh
Q 045281 405 VGLAVTRSEEEERLVSAAELEQRVSELM 432 (481)
Q Consensus 405 ~G~~l~~~~~~~~~~~~~~l~~av~~il 432 (481)
+ +... -+++++.+.|.+.+
T Consensus 290 --l-l~~~------~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 290 --L-LYHS------TDPDEIVEYVRKNL 308 (335)
T ss_pred --C-eEec------CCHHHHHHHHHHhh
Confidence 4 4443 46777777665544
No 62
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.88 E-value=1.1e-07 Score=94.27 Aligned_cols=106 Identities=14% Similarity=0.182 Sum_probs=71.0
Q ss_pred CCcEEecccch---HHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccc
Q 045281 342 RGLVVESWAPQ---VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERL 418 (481)
Q Consensus 342 ~~~~~~~~vpq---~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (481)
+++.+.+.+++ ..++..+++ +|+..|. .+.||+++|+|+|.++..+++.. .+ +. |.+..+.
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e---~~-~~-g~~~lv~-------- 318 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE---TV-EA-GTNKLVG-------- 318 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH---HH-hc-CceEEeC--------
Confidence 47887776664 456778887 8987764 47999999999999976665553 22 33 7776653
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 045281 419 VSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 419 ~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (481)
.++++|.+++.++++|++ .+++...-. .. ..+++++.+.++.|.+
T Consensus 319 ~d~~~i~~ai~~ll~~~~---~~~~~~~~~---~~-~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 319 TDKENITKAAKRLLTDPD---EYKKMSNAS---NP-YGDGEASERIVEELLN 363 (365)
T ss_pred CCHHHHHHHHHHHHhChH---HHHHhhhcC---CC-CcCchHHHHHHHHHHh
Confidence 367999999999998886 444433222 21 1245566555555544
No 63
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.87 E-value=2.8e-07 Score=91.30 Aligned_cols=135 Identities=15% Similarity=0.141 Sum_probs=85.1
Q ss_pred CcEEEEecCCCCCC-CHHHHHHHHHHHHhCCCc-EEEEEeCCCCCCccccccccccCchhhHhhhc--CCCcEEecccch
Q 045281 277 RSVLLLCFGSLGSF-SCKQLKEMAIGLERSGVK-FLWVVRAPAPDSVENRSSLESLLPEGFLDRTK--DRGLVVESWAPQ 352 (481)
Q Consensus 277 ~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~-~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~vpq 352 (481)
++.+++++|..... ..+.+..++++++..... ++++..++... ...+. ....+.. .+++.+.++.++
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~--------~~~l~-~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRT--------RPRIR-EAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCCh--------HHHHH-HHHHhhccCCCCEEEECCcCH
Confidence 34788888877633 456678888888875432 44444332110 01111 1111121 357777766554
Q ss_pred H---HhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHH
Q 045281 353 V---EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVS 429 (481)
Q Consensus 353 ~---~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~ 429 (481)
. .++..+++ +|+..| |.+.|++.+|+|+|+++.. |. +..+.+. |+++.+.. +.++|.+++.
T Consensus 269 ~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~~--------~~~~i~~~i~ 332 (363)
T cd03786 269 LYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVGT--------DPEAILAAIE 332 (363)
T ss_pred HHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecCC--------CHHHHHHHHH
Confidence 3 46777888 999999 7888999999999998743 32 2333333 76655532 5689999999
Q ss_pred HHhcCch
Q 045281 430 ELMDSEK 436 (481)
Q Consensus 430 ~il~~~~ 436 (481)
++++++.
T Consensus 333 ~ll~~~~ 339 (363)
T cd03786 333 KLLSDEF 339 (363)
T ss_pred HHhcCch
Confidence 9999876
No 64
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.85 E-value=1e-05 Score=82.32 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=69.9
Q ss_pred CCcEEecccchHHh---hhcc----CcceEEecc---Cc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeec
Q 045281 342 RGLVVESWAPQVEV---LNHE----SVGGFVTHC---GW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (481)
Q Consensus 342 ~~~~~~~~vpq~~l---L~~~----~~~~~vtHg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
+++.+.+++++.++ +..+ ++ ||... |. .+++||+++|+|+|+.-..+ +...+ +.-..|..++
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv-~~~~~G~lv~ 389 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDII-ANCRNGLLVD 389 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHh-cCCCcEEEeC
Confidence 46777788876554 5544 55 77643 43 58999999999999986533 43444 3424688887
Q ss_pred cCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 045281 411 RSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (481)
.. +++++.+++.++++|+. . .+++++..++.+.+.-+-...++++.+
T Consensus 390 ~~-------d~~~la~~i~~ll~~~~---~---~~~~~~~a~~~~~~~fsw~~~~~~~~~ 436 (439)
T TIGR02472 390 VL-------DLEAIASALEDALSDSS---Q---WQLWSRNGIEGVRRHYSWDAHVEKYLR 436 (439)
T ss_pred CC-------CHHHHHHHHHHHHhCHH---H---HHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 74 78999999999999876 2 233333333322334554444555444
No 65
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.85 E-value=2.1e-05 Score=79.11 Aligned_cols=111 Identities=19% Similarity=0.254 Sum_probs=73.9
Q ss_pred CCcEEecccchH---HhhhccCcceEEe---ccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcc
Q 045281 342 RGLVVESWAPQV---EVLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 342 ~~~~~~~~vpq~---~lL~~~~~~~~vt---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
+++.+.+++|+. ++|..+++ +|. +-|. .++.||+++|+|+|+....+ ....+ +.-+.|..++..
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i-~~~~~g~~~~~~-- 353 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAV-ADGETGLLVDGH-- 353 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhh-ccCCceEECCCC--
Confidence 578898999864 57889998 663 2343 58999999999999976533 33445 343568877763
Q ss_pred cccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 415 EERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 415 ~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
+.+++.+++.+++++++ .+++++++++..+ .-+-...++++++.+.+
T Consensus 354 -----d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--------~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 354 -----DPADWADALARLLDDPRTRIRMGAAAVEHAA--------GFSWAATADGLLSSYRD 401 (405)
T ss_pred -----CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHH
Confidence 78999999999998876 3344444443321 24444445555554443
No 66
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.83 E-value=1.2e-05 Score=80.74 Aligned_cols=112 Identities=11% Similarity=0.122 Sum_probs=68.7
Q ss_pred CCcEEecccchH---HhhhccCcceEEe---ccCch-hHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcc
Q 045281 342 RGLVVESWAPQV---EVLNHESVGGFVT---HCGWN-SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 342 ~~~~~~~~vpq~---~lL~~~~~~~~vt---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
+++.+.+|+|+. .++..+++ +|. +-|.| ++.||+++|+|+|+.+..+ ....+ +. |.+... .
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~~-~~~~~~-~--- 317 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-PP-DMILLA-E--- 317 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-eC-Cceeec-C---
Confidence 468888999864 47778888 654 22444 9999999999999987643 22344 34 544332 2
Q ss_pred cccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 415 EERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 415 ~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
.+.+++.+++.+++.+.. -+. .+....++.+++.-+-....+++++...+.
T Consensus 318 ----~~~~~l~~~l~~~l~~~~---~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l 368 (398)
T cd03796 318 ----PDVESIVRKLEEAISILR---TGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRI 368 (398)
T ss_pred ----CCHHHHHHHHHHHHhChh---hhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 367999999999998653 110 111222222334556555566655555443
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.78 E-value=2.2e-05 Score=78.51 Aligned_cols=91 Identities=12% Similarity=0.105 Sum_probs=62.3
Q ss_pred CCCcEEecccchH---HhhhccCcceEEec---cC-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 341 DRGLVVESWAPQV---EVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~~~~~~~vpq~---~lL~~~~~~~~vtH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+++|+. .++..+++ ++.. -| -.++.||+.+|+|+|+.-..+ ....+ ..-+.|..++
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i-~~~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETV-VDGETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHh-ccCCceEEeC---
Confidence 3689999999975 46788888 6632 22 257899999999999975433 33345 3324676653
Q ss_pred ccccccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 045281 414 EEERLVSAAELEQRVSELMDSEK-GRAVKERVVE 446 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~ 446 (481)
.+++++.+++..++++++ .+++.+++++
T Consensus 349 -----~~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 349 -----PTPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred -----CCHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 366899999999999876 3344444443
No 68
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.78 E-value=1.8e-05 Score=78.05 Aligned_cols=111 Identities=16% Similarity=0.209 Sum_probs=73.2
Q ss_pred CCcEEecccc-hH---HhhhccCcceEEeccC----chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 342 RGLVVESWAP-QV---EVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 342 ~~~~~~~~vp-q~---~lL~~~~~~~~vtHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.++.+.+|++ +. .++..+++ ++.... .+++.||+.+|+|+|+....+ ....+ +.-+.|..++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~-~~~~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIV-DHGVTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCCC----Chhhe-eCCCceEEeCC--
Confidence 4677889998 43 46888888 777532 479999999999999875432 22334 23246777766
Q ss_pred ccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 045281 414 EEERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (481)
.+.+++.+++.+++.|++ .+++.+++++.. .+.-+.....+++.+.+.
T Consensus 315 -----~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-------~~~~s~~~~~~~~~~~y~ 363 (365)
T cd03825 315 -----GDPEDLAEGIEWLLADPDEREELGEAARELA-------ENEFDSRVQAKRYLSLYE 363 (365)
T ss_pred -----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHhcCHHHHHHHHHHHHh
Confidence 478999999999998876 333444443322 234555556666665544
No 69
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.76 E-value=2.1e-05 Score=76.27 Aligned_cols=90 Identities=18% Similarity=0.294 Sum_probs=63.4
Q ss_pred CCcEEecccc-hHHhhhccCcceEEeccC----chhHHHHHhcCCcEEecccccchhhHHHHHHHhhc-eeeeeccCccc
Q 045281 342 RGLVVESWAP-QVEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMK-VGLAVTRSEEE 415 (481)
Q Consensus 342 ~~~~~~~~vp-q~~lL~~~~~~~~vtHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~ 415 (481)
.++.+.++.. ...++..+++ +|.... -+++.||+.+|+|+|+.+..+.+.. +.+. | .|..++.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~~----~~~~-~~~g~~~~~---- 303 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPSE----IIED-GVNGLLVPN---- 303 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchHh----hhcc-CcceEEeCC----
Confidence 4566767633 3568888888 776542 4689999999999998765544432 3234 5 7888876
Q ss_pred ccccCHHHHHHHHHHHhcCch-HHHHHHHHH
Q 045281 416 ERLVSAAELEQRVSELMDSEK-GRAVKERVV 445 (481)
Q Consensus 416 ~~~~~~~~l~~av~~il~~~~-~~~~~~~a~ 445 (481)
.+.+++.+++.+++.|++ .+.++++++
T Consensus 304 ---~~~~~~~~~i~~ll~~~~~~~~~~~~~~ 331 (348)
T cd03820 304 ---GDVEALAEALLRLMEDEELRKRMGANAR 331 (348)
T ss_pred ---CCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 478999999999999887 334444443
No 70
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.74 E-value=1.8e-05 Score=77.71 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=63.2
Q ss_pred CCCcEEecccchHH---hhhccCcceEEec---cC-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vtH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.+++.+.+|+++.+ ++..+++ +|.- .| .+++.||+++|+|+|+.+.. .....+ .. +.|...+.+
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~-~~-~~~~~~~~~- 331 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELI-EY-GCGWVVDDD- 331 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHh-hc-CceEEeCCC-
Confidence 35788999999544 5788888 5543 22 36889999999999997543 344445 34 777776653
Q ss_pred ccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 045281 414 EEERLVSAAELEQRVSELMDSEK-GRAVKERVVEM 447 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l 447 (481)
.+++.+++.+++.+++ .+.+.+++++.
T Consensus 332 -------~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 332 -------VDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred -------hHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 3999999999999876 23344444433
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.73 E-value=2.8e-05 Score=76.43 Aligned_cols=151 Identities=14% Similarity=0.134 Sum_probs=85.8
Q ss_pred cEEEEecCCCCC-CCHHHHHHHHHHHHhCCCcE-EEEEeCCCCCCccccccccccCchhhH---hhhc-CCCcEEecccc
Q 045281 278 SVLLLCFGSLGS-FSCKQLKEMAIGLERSGVKF-LWVVRAPAPDSVENRSSLESLLPEGFL---DRTK-DRGLVVESWAP 351 (481)
Q Consensus 278 ~~v~vs~GS~~~-~~~~~~~~~~~al~~~~~~~-iw~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~-~~~~~~~~~vp 351 (481)
..+++..|.+.. ...+.+.+.+..+...+..+ ++++|.+... ..+...+. .+.. ..++.+.+|.+
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~---------~~~~~~~~~~~~~~~~~~~v~~~g~~~ 255 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGR---------RFYYAELLELIKRLGLQDRVTFVGHCS 255 (355)
T ss_pred ceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCccc---------chHHHHHHHHHHHcCCcceEEEcCCcc
Confidence 366677787662 23455555555555533233 3444443110 00111111 1112 34688888855
Q ss_pred h-HHhhhccCcceEEe--ccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHH
Q 045281 352 Q-VEVLNHESVGGFVT--HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQR 427 (481)
Q Consensus 352 q-~~lL~~~~~~~~vt--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~a 427 (481)
. ..++..+++.++-+ +-|+ +++.||+++|+|+|+.-..+ ....+ ..-+.|..++. -+.+++.++
T Consensus 256 ~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i-~~~~~g~~~~~-------~~~~~l~~~ 323 (355)
T cd03819 256 DMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETV-RPGETGLLVPP-------GDAEALAQA 323 (355)
T ss_pred cHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHH-hCCCceEEeCC-------CCHHHHHHH
Confidence 3 56888899833333 1233 59999999999999875432 33444 34247888876 388999999
Q ss_pred HHHHhc-Cch-HHHHHHHHHHHHH
Q 045281 428 VSELMD-SEK-GRAVKERVVEMKE 449 (481)
Q Consensus 428 v~~il~-~~~-~~~~~~~a~~l~~ 449 (481)
+..++. +++ .++++++|++..+
T Consensus 324 i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 324 LDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHH
Confidence 975654 554 3445555555443
No 72
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.72 E-value=1.4e-05 Score=79.05 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=66.0
Q ss_pred CCCcEEecccchHH---hhhccCcceEEecc----------CchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceee
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVTHC----------GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGL 407 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vtHg----------G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 407 (481)
..++.+.+++|+.+ ++..+++ +|... --+++.||+++|+|+|+.+..+ ++..+. .-+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~-~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVE-DGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhhee-cCCeeE
Confidence 35788889998644 5888888 65422 2468999999999999987643 445553 437888
Q ss_pred eeccCcccccccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 045281 408 AVTRSEEEERLVSAAELEQRVSELMDSEK-GRAVKERVVE 446 (481)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~ 446 (481)
.++. -+.+++.+++.+++.|++ .+.+.+++++
T Consensus 317 ~~~~-------~d~~~l~~~i~~l~~~~~~~~~~~~~a~~ 349 (367)
T cd05844 317 LVPE-------GDVAALAAALGRLLADPDLRARMGAAGRR 349 (367)
T ss_pred EECC-------CCHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 8876 377999999999999876 3334444433
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.67 E-value=4.7e-05 Score=74.83 Aligned_cols=91 Identities=19% Similarity=0.310 Sum_probs=62.7
Q ss_pred CCCcEEec-ccch---HHhhhccCcceEEe--c----cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeec
Q 045281 341 DRGLVVES-WAPQ---VEVLNHESVGGFVT--H----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (481)
Q Consensus 341 ~~~~~~~~-~vpq---~~lL~~~~~~~~vt--H----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
..++.+.+ |+|+ ..++..+++ +|. + |-.++++||+++|+|+|+.+..+ ...+. .-+.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~-~~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVL-DGGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheee-eCCCcEEEc
Confidence 35777765 4885 457788888 653 2 33468999999999999987654 23342 337788777
Q ss_pred cCcccccccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 045281 411 RSEEEERLVSAAELEQRVSELMDSEK-GRAVKERVVE 446 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~ 446 (481)
.. +.+++.+++.++++|++ .+++++++++
T Consensus 318 ~~-------d~~~~~~~l~~l~~~~~~~~~~~~~~~~ 347 (366)
T cd03822 318 PG-------DPAALAEAIRRLLADPELAQALRARARE 347 (366)
T ss_pred CC-------CHHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 73 78999999999999865 3333333333
No 74
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.66 E-value=0.00019 Score=78.08 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCcEEecccchHH---hhhcc----CcceEEec---cCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeec
Q 045281 342 RGLVVESWAPQVE---VLNHE----SVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (481)
Q Consensus 342 ~~~~~~~~vpq~~---lL~~~----~~~~~vtH---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
++|.+.+++++.+ ++..+ ++ ||.- =|+ .+++||+++|+|+|+....+ ....+ +.-.-|+.++
T Consensus 548 g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII-~~g~nGlLVd 620 (1050)
T TIGR02468 548 GQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIH-RVLDNGLLVD 620 (1050)
T ss_pred CeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHh-ccCCcEEEEC
Confidence 4677878888755 45544 35 7764 344 58899999999999986543 22333 3424688888
Q ss_pred cCcccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHH
Q 045281 411 RSEEEERLVSAAELEQRVSELMDSEK-GRAVKERVVEM 447 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l 447 (481)
. -+++.|++++.+++.|++ .+.|.+++++.
T Consensus 621 P-------~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~ 651 (1050)
T TIGR02468 621 P-------HDQQAIADALLKLVADKQLWAECRQNGLKN 651 (1050)
T ss_pred C-------CCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 7 388999999999999887 34455555443
No 75
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.65 E-value=8.8e-05 Score=72.52 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=57.0
Q ss_pred CCcEEecccc-hHHhhhccCcceEEeccCc----hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccc
Q 045281 342 RGLVVESWAP-QVEVLNHESVGGFVTHCGW----NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEE 416 (481)
Q Consensus 342 ~~~~~~~~vp-q~~lL~~~~~~~~vtHgG~----gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
.++.+.+... ...++..+++ +|....+ +++.||+.+|+|+|+... ..+...+ +. .|..++..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~-~~--~g~~~~~~---- 317 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELV-GD--TGFLVPPG---- 317 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHh-hc--CCEEeCCC----
Confidence 3565555444 3568889998 7765443 799999999999998544 3444445 33 56666663
Q ss_pred cccCHHHHHHHHHHHhcCch
Q 045281 417 RLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 417 ~~~~~~~l~~av~~il~~~~ 436 (481)
+.+++.+++.+++++++
T Consensus 318 ---~~~~l~~~i~~l~~~~~ 334 (365)
T cd03807 318 ---DPEALAEAIEALLADPA 334 (365)
T ss_pred ---CHHHHHHHHHHHHhChH
Confidence 78999999999998875
No 76
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.61 E-value=3.2e-05 Score=75.09 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCCcEEecccch-HHhhhccCcceEEec----cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccc
Q 045281 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415 (481)
Q Consensus 341 ~~~~~~~~~vpq-~~lL~~~~~~~~vtH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
..++.+.++.+. .+++..+++ +|.- |.-+++.||+.+|+|+|+.... .....+ +.-+.|..++..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEECCC---
Confidence 346778888775 468889998 6632 2346899999999999986544 445556 444678888774
Q ss_pred ccccCHHHH---HHHHHHHhcCch
Q 045281 416 ERLVSAAEL---EQRVSELMDSEK 436 (481)
Q Consensus 416 ~~~~~~~~l---~~av~~il~~~~ 436 (481)
+.+.+ .+++..++.+++
T Consensus 315 ----~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 315 ----DEAALAAAALALLDLLLDPE 334 (353)
T ss_pred ----CHHHHHHHHHHHHhccCChH
Confidence 66777 555556666655
No 77
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.60 E-value=0.00015 Score=71.23 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=60.5
Q ss_pred CCCcEEecccchH---HhhhccCcceEEec----------cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceee
Q 045281 341 DRGLVVESWAPQV---EVLNHESVGGFVTH----------CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGL 407 (481)
Q Consensus 341 ~~~~~~~~~vpq~---~lL~~~~~~~~vtH----------gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 407 (481)
.+++.+.+++|+. .++..+++ +|.- |.-+++.||+++|+|+|+.+..+ ....+ +.-..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 4688999999854 46777888 5552 23468999999999999976532 22344 4424788
Q ss_pred eeccCcccccccCHHHHHHHHHHHhcCch
Q 045281 408 AVTRSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
.+... +.+++.+++.+++.|+.
T Consensus 308 ~~~~~-------~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 308 LVPPG-------DPEALADAIERLLDDPE 329 (355)
T ss_pred EeCCC-------CHHHHHHHHHHHHhCHH
Confidence 87763 78999999999998876
No 78
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.59 E-value=8.3e-05 Score=73.90 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=72.0
Q ss_pred CcEEecccc-hHHhhhccCcceEE--ec--cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccccc
Q 045281 343 GLVVESWAP-QVEVLNHESVGGFV--TH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEER 417 (481)
Q Consensus 343 ~~~~~~~vp-q~~lL~~~~~~~~v--tH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 417 (481)
++.+.++.. ...++..+++ +| |+ |--.++.||+++|+|+|+....+ +...+ +.-..|..++..
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i-~~~~~g~~~~~~----- 323 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELV-QHGVTGALVPPG----- 323 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHh-cCCCceEEeCCC-----
Confidence 455555544 3568899998 66 33 33468999999999999976543 34444 342468888763
Q ss_pred ccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 418 LVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 418 ~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
+.+++.+++.+++.|++ .+.+.++++ +.+.+.-+....++++.+...+
T Consensus 324 --d~~~la~~i~~l~~~~~~~~~~~~~a~-------~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 324 --DAVALARALQPYVSDPAARRAHGAAGR-------ARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHH-------HHHHHhCCHHHHHHHHHHHHHH
Confidence 78999999999998876 222333333 2223355665666666665543
No 79
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.59 E-value=8.2e-05 Score=74.67 Aligned_cols=109 Identities=20% Similarity=0.166 Sum_probs=72.3
Q ss_pred CCCcEEecccch-HHhhhccCcceEE--ec--cCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcc
Q 045281 341 DRGLVVESWAPQ-VEVLNHESVGGFV--TH--CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 341 ~~~~~~~~~vpq-~~lL~~~~~~~~v--tH--gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
..++.+.+++++ ..++..+++ +| ++ .|. +.+.||+.+|+|+|+.+...+.. . ..-|.|+.+. .
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~-~~~~~g~lv~-~-- 347 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----D-ALPGAELLVA-A-- 347 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----c-ccCCcceEeC-C--
Confidence 468888899986 458888998 65 33 354 36999999999999998643321 1 1226777765 3
Q ss_pred cccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 045281 415 EERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESF 472 (481)
Q Consensus 415 ~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 472 (481)
+++++.+++.++++|++ .+.+.+++++. +.+.-+-.+.++.+.+.+
T Consensus 348 -----~~~~la~ai~~ll~~~~~~~~~~~~ar~~-------v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 348 -----DPADFAAAILALLANPAEREELGQAARRR-------VLQHYHWPRNLARLDALL 394 (397)
T ss_pred -----CHHHHHHHHHHHHcCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHh
Confidence 67999999999999876 23344444333 223455555566655443
No 80
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.54 E-value=6.1e-05 Score=74.09 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=55.4
Q ss_pred CCcEEecccch-HHhhhccCcceEEeccC----chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccc
Q 045281 342 RGLVVESWAPQ-VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEE 416 (481)
Q Consensus 342 ~~~~~~~~vpq-~~lL~~~~~~~~vtHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
.++.+.++..+ ..++..+++ +|.-.. .+++.||+.+|+|+|+. |...+...+ +. .|..+..
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~~~----- 310 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIVPI----- 310 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEeCC-----
Confidence 46778787754 568889998 554332 46899999999999975 444455555 33 4555555
Q ss_pred cccCHHHHHHHHHHHhcCc
Q 045281 417 RLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 417 ~~~~~~~l~~av~~il~~~ 435 (481)
-+.+++.+++.+++.++
T Consensus 311 --~~~~~~~~~i~~ll~~~ 327 (360)
T cd04951 311 --SDPEALANKIDEILKMS 327 (360)
T ss_pred --CCHHHHHHHHHHHHhCC
Confidence 37899999999998533
No 81
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.53 E-value=6.7e-07 Score=72.76 Aligned_cols=120 Identities=20% Similarity=0.268 Sum_probs=82.5
Q ss_pred EEEEecCCCCCCC---HHHHHHHHHHHHhCCC-cEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEE--ecccch
Q 045281 279 VLLLCFGSLGSFS---CKQLKEMAIGLERSGV-KFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVV--ESWAPQ 352 (481)
Q Consensus 279 ~v~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~vpq 352 (481)
.+||+-||....+ .-.-.+.++.|.+.|. +.|...+.+... .++......+..++.+ .+|-|-
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-----------~~d~~~~~~k~~gl~id~y~f~ps 73 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-----------FGDPIDLIRKNGGLTIDGYDFSPS 73 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-----------CCCHHHhhcccCCeEEEEEecCcc
Confidence 8999999987221 1112346777788774 567777764110 1222222223334443 467785
Q ss_pred -HHhhhccCcceEEeccCchhHHHHHhcCCcEEeccc----ccchhhHHHHHHHhhceeeeeccC
Q 045281 353 -VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL----YAEQKMIKAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 353 -~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~----~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
.+....+++ +|+|+|.||++|.|..|+|.|+++- -..|-..|..++++ |.=..-..+
T Consensus 74 l~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~~C~ps 135 (170)
T KOG3349|consen 74 LTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLYYCTPS 135 (170)
T ss_pred HHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEEEeecc
Confidence 667777888 9999999999999999999999996 45899999999754 776665554
No 82
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.53 E-value=0.00031 Score=74.65 Aligned_cols=92 Identities=13% Similarity=0.181 Sum_probs=57.3
Q ss_pred CCcEEeccc-ch---HHhhhc-cC-cceEEec---cCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeecc
Q 045281 342 RGLVVESWA-PQ---VEVLNH-ES-VGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTR 411 (481)
Q Consensus 342 ~~~~~~~~v-pq---~~lL~~-~~-~~~~vtH---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~ 411 (481)
+++.+.++. +. .+++.+ ++ .++||.- =|. -+++||+++|+|+|+.-.. -....| +.-.-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV-~dg~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEII-QDGVSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHh-cCCCcEEEeCC
Confidence 456666664 32 345543 22 1227743 233 4889999999999997554 344455 34245888887
Q ss_pred CcccccccCHHHHHHHHHHHh----cCch-HHHHHHHHH
Q 045281 412 SEEEERLVSAAELEQRVSELM----DSEK-GRAVKERVV 445 (481)
Q Consensus 412 ~~~~~~~~~~~~l~~av~~il----~~~~-~~~~~~~a~ 445 (481)
. +++++++++.+++ .|++ .+.+.++++
T Consensus 694 ~-------D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~ 725 (784)
T TIGR02470 694 Y-------HGEEAAEKIVDFFEKCDEDPSYWQKISQGGL 725 (784)
T ss_pred C-------CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4 7899999998875 5665 344544443
No 83
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.52 E-value=7.9e-06 Score=80.65 Aligned_cols=130 Identities=12% Similarity=0.183 Sum_probs=80.3
Q ss_pred cEEEEecCCCC---CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCcEEecccc--
Q 045281 278 SVLLLCFGSLG---SFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAP-- 351 (481)
Q Consensus 278 ~~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vp-- 351 (481)
+.++|++=... ....+.+..+++++...+.++++++...... ...+-+.+.+... .+|+.+.+-++
T Consensus 202 ~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~--------~~~i~~~i~~~~~~~~~v~l~~~l~~~ 273 (365)
T TIGR03568 202 PYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG--------SRIINEAIEEYVNEHPNFRLFKSLGQE 273 (365)
T ss_pred CEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC--------chHHHHHHHHHhcCCCCEEEECCCChH
Confidence 48888875543 3346779999999998876666665443110 0000111111111 35787776554
Q ss_pred -hHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHH
Q 045281 352 -QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSE 430 (481)
Q Consensus 352 -q~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~ 430 (481)
...++.++++ +||-.+.+- .||...|+|.|.+- +-+ .-+ +. |..+.+- . .++++|.+++.+
T Consensus 274 ~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~-g~nvl~v-g------~~~~~I~~a~~~ 335 (365)
T TIGR03568 274 RYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LR-ADSVIDV-D------PDKEEIVKAIEK 335 (365)
T ss_pred HHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hh-cCeEEEe-C------CCHHHHHHHHHH
Confidence 5668889999 998876555 99999999999873 311 111 22 4433322 3 578999999998
Q ss_pred Hhc
Q 045281 431 LMD 433 (481)
Q Consensus 431 il~ 433 (481)
++.
T Consensus 336 ~~~ 338 (365)
T TIGR03568 336 LLD 338 (365)
T ss_pred HhC
Confidence 543
No 84
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.51 E-value=0.00024 Score=71.37 Aligned_cols=113 Identities=20% Similarity=0.305 Sum_probs=77.2
Q ss_pred CCCcEEecccchHH---hhhccCcceEEec---------cCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceee
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVTH---------CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGL 407 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vtH---------gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~ 407 (481)
.+++.+.+|+|+.+ ++..+++ +|.- -|. ++++||+.+|+|+|+....+ ....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhh-cCCCceE
Confidence 35788999999754 6778888 6642 344 57899999999999976543 33444 4424688
Q ss_pred eeccCcccccccCHHHHHHHHHHHhc-Cch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 408 AVTRSEEEERLVSAAELEQRVSELMD-SEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 408 ~l~~~~~~~~~~~~~~l~~av~~il~-~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
.++.. +.+++.+++.++++ |++ .+.+.+++ ++.+.+.-+.....+++.+.+.+
T Consensus 351 lv~~~-------d~~~la~ai~~l~~~d~~~~~~~~~~a-------r~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 351 LVPEN-------DAQALAQRLAAFSQLDTDELAPVVKRA-------REKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EeCCC-------CHHHHHHHHHHHHhCCHHHHHHHHHHH-------HHHHHHhcCHHHHHHHHHHHHhh
Confidence 88763 78999999999998 776 23333333 33333456666677777766543
No 85
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.51 E-value=8.9e-05 Score=72.94 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=59.0
Q ss_pred CCcEEecccch-HHhhhccCcceEEec----cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccc
Q 045281 342 RGLVVESWAPQ-VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEE 416 (481)
Q Consensus 342 ~~~~~~~~vpq-~~lL~~~~~~~~vtH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
.++.+.++..+ .+++..+++ +|.- |-..+++||+.+|+|+|+....+ ....+ +. +.|..+..
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~~~----- 315 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLSLD----- 315 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEeCC-----
Confidence 56777787544 668889998 6643 33578999999999999876544 23344 44 66655544
Q ss_pred cccCHHHHHHHHHHHhcCch
Q 045281 417 RLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 417 ~~~~~~~l~~av~~il~~~~ 436 (481)
-+++++++++.++++|++
T Consensus 316 --~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 316 --ESPEIWAEEILKLKSEDR 333 (358)
T ss_pred --CCHHHHHHHHHHHHhCcc
Confidence 368999999999999987
No 86
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.47 E-value=6.2e-06 Score=79.99 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=93.4
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCc-EEEEEeCCCCCCccccccccccCchhhHhhhcC-CCcEEecccchHHh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVK-FLWVVRAPAPDSVENRSSLESLLPEGFLDRTKD-RGLVVESWAPQVEV 355 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~-~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~vpq~~l 355 (481)
++|.+--||....-...+-.++++.+..... .++.+.... + . +.+.+.+.. ..+.+.+ .-.++
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--------~----~-~~i~~~~~~~~~~~~~~--~~~~~ 232 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--------K----G-KDLKEIYGDISEFEISY--DTHKA 232 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC--------c----H-HHHHHHHhcCCCcEEec--cHHHH
Confidence 4888888998744344455455555543221 333333220 0 0 122222211 1222322 33568
Q ss_pred hhccCcceEEeccCchhHHHHHhcCCcEEecccc--cchhhHHHHHHH--hhceeeee-------------ccCcccccc
Q 045281 356 LNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLY--AEQKMIKAVVVE--EMKVGLAV-------------TRSEEEERL 418 (481)
Q Consensus 356 L~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~--~DQ~~na~~v~~--~~G~G~~l-------------~~~~~~~~~ 418 (481)
+..+++ +|+-.|..|+ |+..+|+|+|+ ++. .-|+.||+++++ ..|..-.+ -.+ +
T Consensus 233 m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~--~--- 303 (347)
T PRK14089 233 LLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQE--F--- 303 (347)
T ss_pred HHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcc--c---
Confidence 899999 9999999999 99999999999 663 469999999951 34555444 223 4
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Q 045281 419 VSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNL 468 (481)
Q Consensus 419 ~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l 468 (481)
.|++.|.+++.+. . .+.+++...++.+.+. ++.+.+..+.+
T Consensus 304 ~t~~~la~~i~~~-~---~~~~~~~~~~l~~~l~-----~~a~~~~A~~i 344 (347)
T PRK14089 304 VTVENLLKAYKEM-D---REKFFKKSKELREYLK-----HGSAKNVAKIL 344 (347)
T ss_pred CCHHHHHHHHHHH-H---HHHHHHHHHHHHHHhc-----CCHHHHHHHHH
Confidence 8999999999872 1 1235556666655543 34554444433
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.47 E-value=0.00048 Score=73.06 Aligned_cols=111 Identities=15% Similarity=0.207 Sum_probs=71.1
Q ss_pred CCCcEEecccch-HHhhhccCcceEEe---ccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccc
Q 045281 341 DRGLVVESWAPQ-VEVLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415 (481)
Q Consensus 341 ~~~~~~~~~vpq-~~lL~~~~~~~~vt---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
.+++.+.+|.++ ..++..+++ +|. +.|. +++.||+.+|+|+|+....+ ....| +.-..|+.++.. .
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV-~dg~~GlLv~~~--d 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAV-QEGVTGLTLPAD--T 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHc-cCCCCEEEeCCC--C
Confidence 357888888875 458888998 654 4554 68999999999999986532 33445 442368888865 3
Q ss_pred ccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 045281 416 ERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVE 470 (481)
Q Consensus 416 ~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 470 (481)
.+.+++.+++.+++.+.. ...+++++++.. .+..+....++++++
T Consensus 644 ---~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a-------~~~FS~~~~~~~~~~ 689 (694)
T PRK15179 644 ---VTAPDVAEALARIHDMCAADPGIARKAADWA-------SARFSLNQMIASTVR 689 (694)
T ss_pred ---CChHHHHHHHHHHHhChhccHHHHHHHHHHH-------HHhCCHHHHHHHHHH
Confidence 567788888877765332 112555444333 224555455555544
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.46 E-value=0.00017 Score=69.83 Aligned_cols=333 Identities=14% Similarity=0.080 Sum_probs=176.2
Q ss_pred CCCccCHHHHHHHHHHHHhCCCCeEEEEEeC-CCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHH
Q 045281 10 SPGRGHLNSMVELGKLILTYHPCFSIDIIIP-TAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPA 88 (481)
Q Consensus 10 ~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~-~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (481)
-.+.|-++-.++|.++|.++-|++.+++.|. ++..+. ..+. ..+.+...-+|.+ .+
T Consensus 56 aaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~-------a~~~--~~~~v~h~YlP~D-~~------------- 112 (419)
T COG1519 56 AASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAER-------AAAL--FGDSVIHQYLPLD-LP------------- 112 (419)
T ss_pred ecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHH-------HHHH--cCCCeEEEecCcC-ch-------------
Confidence 3678999999999999999977788888773 222111 1111 1122444444432 11
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccCCccEEEE-CC-CCchhHHHHhhccCCCeEEEecccHHHHHHHHHhhhhccCCCCcc
Q 045281 89 LAYELGELNNPKLHETLITISKRSNLKAFVI-DF-FCSPAFQVSSSTLSIPTYYYFTSGGSGLAALLYLPTLHKNTTKSF 166 (481)
Q Consensus 89 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~-D~-~~~~~~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (481)
..++.+++.+ +||++|. +. +++....-+ ++.|||.+.+..=-
T Consensus 113 ----------~~v~rFl~~~----~P~l~Ii~EtElWPnli~e~-~~~~~p~~LvNaRL--------------------- 156 (419)
T COG1519 113 ----------IAVRRFLRKW----RPKLLIIMETELWPNLINEL-KRRGIPLVLVNARL--------------------- 156 (419)
T ss_pred ----------HHHHHHHHhc----CCCEEEEEeccccHHHHHHH-HHcCCCEEEEeeee---------------------
Confidence 1334566666 8998774 44 344445566 89999999653210
Q ss_pred cccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhh-hhcccEEEEeCchhhhHHHHHHHHcccCCCCCCCCCe
Q 045281 167 RELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQ-MAKSAGLIVNTFELLEERAIKAMLEGQCTPGETLPPF 245 (481)
Q Consensus 167 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~~~~~~~~~ 245 (481)
.++.-..+..+....+. ...-+.++.-|-.+-+. +.+- | .+++
T Consensus 157 -------------------------S~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~R-----f~~L----G--a~~v 200 (419)
T COG1519 157 -------------------------SDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQR-----FRSL----G--AKPV 200 (419)
T ss_pred -------------------------chhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHH-----HHhc----C--Ccce
Confidence 00110111111122222 23345555544333332 2111 1 1457
Q ss_pred EeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCccc
Q 045281 246 YCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERS--GVKFLWVVRAPAPDSVEN 323 (481)
Q Consensus 246 ~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~iw~~~~~~~~~~~~ 323 (481)
..+|.+-.+-.... ..+.+...|-..-.....++|..+| -....+.+-....++.+. +...||+=+-....+...
T Consensus 201 ~v~GNlKfd~~~~~--~~~~~~~~~r~~l~~~r~v~iaaST-H~GEeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~ 277 (419)
T COG1519 201 VVTGNLKFDIEPPP--QLAAELAALRRQLGGHRPVWVAAST-HEGEEEIILDAHQALKKQFPNLLLILVPRHPERFKAVE 277 (419)
T ss_pred EEecceeecCCCCh--hhHHHHHHHHHhcCCCCceEEEecC-CCchHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHH
Confidence 88888755433211 1222222232221111266665555 323344455555566553 355667644321100000
Q ss_pred cccccccCchhhHhhh----cCCCcEEecccchHH-hhhccCcce-----EEeccCchhHHHHHhcCCcEEecccccchh
Q 045281 324 RSSLESLLPEGFLDRT----KDRGLVVESWAPQVE-VLNHESVGG-----FVTHCGWNSVLEGVCAGVPMLAWPLYAEQK 393 (481)
Q Consensus 324 ~~~~~~~l~~~~~~~~----~~~~~~~~~~vpq~~-lL~~~~~~~-----~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~ 393 (481)
+.-....+.-....+. ...++++.|-+--+. ++.-+++ + ++-+||+| ..|.+++|+|+|.=|+..-|.
T Consensus 278 ~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ 355 (419)
T COG1519 278 NLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFS 355 (419)
T ss_pred HHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHH
Confidence 0000000111011111 122566666655433 3444443 3 34588888 579999999999999999999
Q ss_pred hHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHH
Q 045281 394 MIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAA 452 (481)
Q Consensus 394 ~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~ 452 (481)
..++++. +.|.|+.++.. +.+.++++.++.|++ .++|.+++.++-...+
T Consensus 356 ei~~~l~-~~ga~~~v~~~---------~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 356 DIAERLL-QAGAGLQVEDA---------DLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred HHHHHHH-hcCCeEEECCH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 9999995 45999988763 788899988888766 3455555555544443
No 89
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.41 E-value=8.2e-05 Score=73.58 Aligned_cols=131 Identities=16% Similarity=0.214 Sum_probs=80.8
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcE-EEEEeCCCCCCccccccccccCchhhHhhh----cCCCcEEecccch-
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERSGVKF-LWVVRAPAPDSVENRSSLESLLPEGFLDRT----KDRGLVVESWAPQ- 352 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~-iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~vpq- 352 (481)
.+++..|.........+..+++++......+ ++.+|.+. .. +.+.+.. ...++.+.+|+++
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~---------~~----~~l~~~~~~~~l~~~v~f~G~~~~~ 247 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS---------DF----EKCKAYSRELGIEQRIIWHGWQSQP 247 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc---------cH----HHHHHHHHHcCCCCeEEEecccCCc
Confidence 5566677765333344667777777653232 34455431 01 1222211 2457889898754
Q ss_pred -HH---hhhccCcceEEec----cCchhHHHHHhcCCcEEecc-cccchhhHHHHHHHhhceeeeeccCcccccccCHHH
Q 045281 353 -VE---VLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWP-LYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAE 423 (481)
Q Consensus 353 -~~---lL~~~~~~~~vtH----gG~gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~ 423 (481)
.. .+..+++ +|.. |--.++.||+++|+|+|+.- ..+ ....+ +.-..|..++. -+.++
T Consensus 248 ~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv~~-------~d~~~ 313 (359)
T PRK09922 248 WEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELYTP-------GNIDE 313 (359)
T ss_pred HHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEECC-------CCHHH
Confidence 22 3445677 6543 22479999999999999875 332 22344 44246888866 48899
Q ss_pred HHHHHHHHhcCch
Q 045281 424 LEQRVSELMDSEK 436 (481)
Q Consensus 424 l~~av~~il~~~~ 436 (481)
+.+++.++++|++
T Consensus 314 la~~i~~l~~~~~ 326 (359)
T PRK09922 314 FVGKLNKVISGEV 326 (359)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999886
No 90
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.41 E-value=0.00055 Score=67.37 Aligned_cols=155 Identities=18% Similarity=0.200 Sum_probs=84.3
Q ss_pred EEecCCCCCCCHHHHHHHHHHHHhCC--CcEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCcEEecccchHH---
Q 045281 281 LLCFGSLGSFSCKQLKEMAIGLERSG--VKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAPQVE--- 354 (481)
Q Consensus 281 ~vs~GS~~~~~~~~~~~~~~al~~~~--~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~vpq~~--- 354 (481)
++.+|+... ...+..+++++.... .+ ++.+|.+... ..+...+.++. ..+++.+.+++++.+
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~-l~ivG~~~~~---------~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~ 263 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKK-LVIVGNADHN---------TPYGKLLKEKAAADPRIIFVGPIYDQELLE 263 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCce-EEEEcCCCCc---------chHHHHHHHHhCCCCcEEEccccChHHHHH
Confidence 445688762 233555667776654 34 3445543111 00111111112 246899999999865
Q ss_pred hhhccCcceEEeccC----c-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHH
Q 045281 355 VLNHESVGGFVTHCG----W-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVS 429 (481)
Q Consensus 355 lL~~~~~~~~vtHgG----~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~ 429 (481)
++..+++ ++.+.- . +++.||+.+|+|+|+....+. ...+ +. .|..+... +. +.+++.
T Consensus 264 ~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~-~~--~g~~~~~~-------~~--l~~~i~ 325 (363)
T cd04955 264 LLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVL-GD--KAIYFKVG-------DD--LASLLE 325 (363)
T ss_pred HHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceee-cC--CeeEecCc-------hH--HHHHHH
Confidence 5666777 555432 2 478999999999999765432 1222 22 34444442 22 999999
Q ss_pred HHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 045281 430 ELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVES 471 (481)
Q Consensus 430 ~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (481)
++++|++ ... ++++..++...+.-+-....+++++.
T Consensus 326 ~l~~~~~---~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~ 361 (363)
T cd04955 326 ELEADPE---EVS---AMAKAARERIREKYTWEKIADQYEEL 361 (363)
T ss_pred HHHhCHH---HHH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9998875 221 22222222222345555556666554
No 91
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.33 E-value=0.00086 Score=66.87 Aligned_cols=168 Identities=19% Similarity=0.223 Sum_probs=92.7
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhC--CCcEEEEEeCCCCCCccccccccccCchhhHhhh---c--CCCcEE-eccc
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERS--GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT---K--DRGLVV-ESWA 350 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~--~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~--~~~~~~-~~~v 350 (481)
++++..|.... ...+..++++++.. +..++++.++.... + +-+.+.+.. . ..++++ .+++
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~------~----~~~~~~~~~~~~~~~~~~v~~~~~~~ 269 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTP------E----VAEEVRQAVALLDRNRTGIIWINKML 269 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcH------H----HHHHHHHHHHHhccccCceEEecCCC
Confidence 55666777662 33455666666664 34444443332100 0 111122111 1 123554 3577
Q ss_pred ch---HHhhhccCcceEEec---cC-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccc-ccccCHH
Q 045281 351 PQ---VEVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE-ERLVSAA 422 (481)
Q Consensus 351 pq---~~lL~~~~~~~~vtH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~-~~~~~~~ 422 (481)
++ ..++..+++ +|.- -| ..+++||+++|+|+|+.... .....+ +.-+.|..++.. . +..-..+
T Consensus 270 ~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i-~~~~~G~~~~~~--~~~~~~~~~ 340 (388)
T TIGR02149 270 PKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVV-VDGETGFLVPPD--NSDADGFQA 340 (388)
T ss_pred CHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHh-hCCCceEEcCCC--CCcccchHH
Confidence 75 446888888 6642 23 35779999999999997543 344555 343578888774 1 0001128
Q ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 423 ELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 423 ~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
.+.+++.+++.|++ .+++.+++++.. .+.-+.....+++++.+++
T Consensus 341 ~l~~~i~~l~~~~~~~~~~~~~a~~~~-------~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 341 ELAKAINILLADPELAKKMGIAGRKRA-------EEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHHh
Confidence 99999999998876 233444433322 2245555566666665554
No 92
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.29 E-value=0.0011 Score=64.50 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=76.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhh--cCCCcEEecccchHH---
Q 045281 280 LLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT--KDRGLVVESWAPQVE--- 354 (481)
Q Consensus 280 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~vpq~~--- 354 (481)
..+..|... .......++++++..+.+++++ +.+... ..+ ....... ..+++.+.+++++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~-G~~~~~---------~~~-~~~~~~~~~~~~~v~~~G~~~~~~~~~ 239 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLA-GPVSDP---------DYF-YREIAPELLDGPDIEYLGEVGGAEKAE 239 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEE-eCCCCH---------HHH-HHHHHHhcccCCcEEEeCCCCHHHHHH
Confidence 344557764 2334556777888887776554 443100 000 1111111 246899999999754
Q ss_pred hhhccCcceEEe--ccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhc-eeeeeccCcccccccCHHHHHHHHHH
Q 045281 355 VLNHESVGGFVT--HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMK-VGLAVTRSEEEERLVSAAELEQRVSE 430 (481)
Q Consensus 355 lL~~~~~~~~vt--HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~~l~~av~~ 430 (481)
++..+++.++-+ +-|. .++.||+++|+|+|+.... .+...+ +. | .|..++. .+++.+++..
T Consensus 240 ~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i-~~-~~~g~l~~~---------~~~l~~~l~~ 304 (335)
T cd03802 240 LLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVV-ED-GVTGFLVDS---------VEELAAAVAR 304 (335)
T ss_pred HHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----Cchhhe-eC-CCcEEEeCC---------HHHHHHHHHH
Confidence 678888833323 2344 4799999999999987653 233344 34 4 5665432 5889999988
Q ss_pred HhcC
Q 045281 431 LMDS 434 (481)
Q Consensus 431 il~~ 434 (481)
++..
T Consensus 305 l~~~ 308 (335)
T cd03802 305 ADRL 308 (335)
T ss_pred Hhcc
Confidence 8654
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.28 E-value=0.00016 Score=70.75 Aligned_cols=190 Identities=18% Similarity=0.239 Sum_probs=102.8
Q ss_pred CCeEecc-ccCCCCCCCCCCCCccccccc-ccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHh-----CCCcEEEEEeC
Q 045281 243 PPFYCIG-PVVGGGNGENRGRDRHESLSW-LDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLER-----SGVKFLWVVRA 315 (481)
Q Consensus 243 ~~~~~vG-pl~~~~~~~~~~~~~~~l~~~-l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~iw~~~~ 315 (481)
-++.||| |+...-... .......+. ++. ++++|.+--||-...-...+-.++++++. .+..|++....
T Consensus 153 ~~~~~VGHPl~d~~~~~---~~~~~~~~~~l~~--~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~ 227 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKPE---PDRAEAREKLLDP--DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAP 227 (373)
T ss_pred CCeEEECCcchhhhccC---CCHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5799999 877654432 112222222 343 34489888899763333334445555443 24455554422
Q ss_pred CCCCCccccccccccCchh-hHhhh--cCCCcEEe-cccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecc-ccc
Q 045281 316 PAPDSVENRSSLESLLPEG-FLDRT--KDRGLVVE-SWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP-LYA 390 (481)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~-~~~~~--~~~~~~~~-~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P-~~~ 390 (481)
. .-.. +.+.. ...++.+. ..-.-.++|..+++ .+.=.| ..|+|+..+|+|||++= ...
T Consensus 228 ~--------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~ 290 (373)
T PF02684_consen 228 E--------------VHEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSP 290 (373)
T ss_pred H--------------HHHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcH
Confidence 1 0011 11111 11122221 22234567888887 443333 56789999999999873 233
Q ss_pred chhhHHHHHHHhhce-e-------eee----ccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcC
Q 045281 391 EQKMIKAVVVEEMKV-G-------LAV----TRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDG 458 (481)
Q Consensus 391 DQ~~na~~v~~~~G~-G-------~~l----~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~ 458 (481)
=-++.|+++.+ ... | ..+ -.+ + .|++.|.+++..++.|++ .++..+...+.+++.++.+
T Consensus 291 lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~--~---~~~~~i~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~ 361 (373)
T PF02684_consen 291 LTYFIAKRLVK-VKYISLPNIIAGREVVPELIQE--D---ATPENIAAELLELLENPE---KRKKQKELFREIRQLLGPG 361 (373)
T ss_pred HHHHHHHHhhc-CCEeechhhhcCCCcchhhhcc--c---CCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHhhhhc
Confidence 45667777652 232 1 111 112 4 899999999999999987 4555555555555544456
Q ss_pred CcHHH
Q 045281 459 GSSRV 463 (481)
Q Consensus 459 g~~~~ 463 (481)
.+++.
T Consensus 362 ~~~~~ 366 (373)
T PF02684_consen 362 ASSRA 366 (373)
T ss_pred cCCHH
Confidence 55544
No 94
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.26 E-value=3.7e-06 Score=82.09 Aligned_cols=133 Identities=11% Similarity=0.168 Sum_probs=78.5
Q ss_pred CCCcEEEEecCCCCCCC-H---HHHHHHHHHHHhC-CCcEEEEEeCCCCCCccccccccccCchhhHhhhcC-CCcEEec
Q 045281 275 PSRSVLLLCFGSLGSFS-C---KQLKEMAIGLERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKD-RGLVVES 348 (481)
Q Consensus 275 ~~~~~v~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 348 (481)
.+++.++|++=...... + ..+.++++++... +.++||.+...+.. . ..+.++... +|+.+..
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~--------~----~~i~~~l~~~~~v~~~~ 245 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRG--------S----DIIIEKLKKYDNVRLIE 245 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHH--------H----HHHHHHHTT-TTEEEE-
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchH--------H----HHHHHHhcccCCEEEEC
Confidence 44569999986655444 3 4455566666665 77899988753111 0 122222221 3888877
Q ss_pred ccc---hHHhhhccCcceEEeccCchhHH-HHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHH
Q 045281 349 WAP---QVEVLNHESVGGFVTHCGWNSVL-EGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAEL 424 (481)
Q Consensus 349 ~vp---q~~lL~~~~~~~~vtHgG~gs~~-eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l 424 (481)
.++ ...+|.++++ +|+..| ++. ||.+.|+|.|.+ -|+-..=.-+ +. |..+.+. .++++|
T Consensus 246 ~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r-~~-~~nvlv~--------~~~~~I 308 (346)
T PF02350_consen 246 PLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR-ER-GSNVLVG--------TDPEAI 308 (346)
T ss_dssp ---HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH-HT-TSEEEET--------SSHHHH
T ss_pred CCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH-hh-cceEEeC--------CCHHHH
Confidence 665 4668889999 999999 566 999999999999 3333332223 23 6666633 578999
Q ss_pred HHHHHHHhcCch
Q 045281 425 EQRVSELMDSEK 436 (481)
Q Consensus 425 ~~av~~il~~~~ 436 (481)
.+++.+++++..
T Consensus 309 ~~ai~~~l~~~~ 320 (346)
T PF02350_consen 309 IQAIEKALSDKD 320 (346)
T ss_dssp HHHHHHHHH-HH
T ss_pred HHHHHHHHhChH
Confidence 999999998744
No 95
>PLN00142 sucrose synthase
Probab=98.25 E-value=0.0013 Score=70.16 Aligned_cols=82 Identities=12% Similarity=0.232 Sum_probs=51.6
Q ss_pred cchHHhhh----ccCcceEEec---cCch-hHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCH
Q 045281 350 APQVEVLN----HESVGGFVTH---CGWN-SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSA 421 (481)
Q Consensus 350 vpq~~lL~----~~~~~~~vtH---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~ 421 (481)
++..++.. .+++ ||.- =|.| ++.||+++|+|+|+....+ ....| +.-.-|..++.. ++
T Consensus 654 ~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV-~dG~tG~LV~P~-------D~ 719 (815)
T PLN00142 654 VRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEII-VDGVSGFHIDPY-------HG 719 (815)
T ss_pred ccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHh-cCCCcEEEeCCC-------CH
Confidence 34445544 2345 7653 4554 8999999999999975533 44445 452358888874 67
Q ss_pred HHHHHHHHHH----hcCch-HHHHHHHHH
Q 045281 422 AELEQRVSEL----MDSEK-GRAVKERVV 445 (481)
Q Consensus 422 ~~l~~av~~i----l~~~~-~~~~~~~a~ 445 (481)
+++++++.++ +.|++ .+.|.++++
T Consensus 720 eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar 748 (815)
T PLN00142 720 DEAANKIADFFEKCKEDPSYWNKISDAGL 748 (815)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888887654 46766 344544443
No 96
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.21 E-value=0.00048 Score=70.54 Aligned_cols=189 Identities=12% Similarity=0.119 Sum_probs=99.4
Q ss_pred CCeEecc-ccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHH--hC--CCcEEEEEeCCC
Q 045281 243 PPFYCIG-PVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLE--RS--GVKFLWVVRAPA 317 (481)
Q Consensus 243 ~~~~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~--~~--~~~~iw~~~~~~ 317 (481)
-++.||| |+....+.. ....+..+-+.-.+++++|-+--||-...=...+-.++++.+ .. +.+|+......
T Consensus 381 v~v~yVGHPL~d~i~~~---~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~- 456 (608)
T PRK01021 381 LRTVYLGHPLVETISSF---SPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANP- 456 (608)
T ss_pred CCeEEECCcHHhhcccC---CCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCch-
Confidence 5799999 887653311 122222233333344558888899977433444555666666 33 34454432221
Q ss_pred CCCccccccccccCchhhHhhhcCCCc---EEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecc-cccchh
Q 045281 318 PDSVENRSSLESLLPEGFLDRTKDRGL---VVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWP-LYAEQK 393 (481)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P-~~~DQ~ 393 (481)
. ..+-+++.....++ .+..--...+++..+++ .+.=.| .-|+|+..+|+|||++= ...=-+
T Consensus 457 ---------~---~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty 521 (608)
T PRK01021 457 ---------K---YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCG-TIVLETALNQTPTIVTCQLRPFDT 521 (608)
T ss_pred ---------h---hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCC-HHHHHHHHhCCCEEEEEecCHHHH
Confidence 0 00112222221121 22110012578888888 665554 45679999999999862 222345
Q ss_pred hHHHHHHHh----hc-----eeeeeccCccc-ccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHH
Q 045281 394 MIKAVVVEE----MK-----VGLAVTRSEEE-ERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAA 451 (481)
Q Consensus 394 ~na~~v~~~----~G-----~G~~l~~~~~~-~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~ 451 (481)
..++++.+- .| +|..+-++==. -...|++.|.+++ +++.|++ .+++++..+++.+.+
T Consensus 522 ~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 522 FLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 566776530 11 12222111000 0127899999997 7888776 445666666666655
No 97
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.19 E-value=0.0014 Score=66.13 Aligned_cols=81 Identities=19% Similarity=0.151 Sum_probs=54.4
Q ss_pred CCCcEEecccchH---HhhhccCcceEEec---cCc-hhHHHHHhcCCcEEecccccchhhHHHHHHH---hhceeeeec
Q 045281 341 DRGLVVESWAPQV---EVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVE---EMKVGLAVT 410 (481)
Q Consensus 341 ~~~~~~~~~vpq~---~lL~~~~~~~~vtH---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~---~~G~G~~l~ 410 (481)
.+++.+.+++|+. .+|..+++ +|+- =|. .++.||+++|+|.|+.-..+.- ..+.+ .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~----~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL----LDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc----hheeeccCCCCceEEe-
Confidence 3578898999865 47778888 5542 133 4789999999999986543211 11212 21466653
Q ss_pred cCcccccccCHHHHHHHHHHHhcCch
Q 045281 411 RSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
-+++++++++.++++++.
T Consensus 377 --------~d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 --------STAEEYAEAIEKILSLSE 394 (419)
T ss_pred --------CCHHHHHHHHHHHHhCCH
Confidence 256899999999998754
No 98
>PLN02275 transferase, transferring glycosyl groups
Probab=98.16 E-value=0.0056 Score=60.80 Aligned_cols=123 Identities=12% Similarity=-0.011 Sum_probs=67.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCe-EEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCF-SIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLR 81 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h-~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (481)
.++.++..|-.|.-..+..++..|+++| | +|++++....... . +. ....++..+.++.+... ....
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~--~~~v~vi~~~~~~~~----~---~~--~~~~~v~v~r~~~~~~~--~~~~ 71 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQA--SFQVDVVAYGGSEPI----P---AL--LNHPSIHIHLMVQPRLL--QRLP 71 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcC--CceEEEEEecCCCCC----H---HH--hcCCcEEEEECCCcccc--cccc
Confidence 4777788899999999999999999998 6 7999985432111 0 11 12357888887642111 1111
Q ss_pred CCCChHHHHHHHHHHhhHHHHHHHHHh-hccCCccEEEECC-CCch----hHHHHhhccCCCeEEEec
Q 045281 82 SPVDLPALAYELGELNNPKLHETLITI-SKRSNLKAFVIDF-FCSP----AFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~pD~vV~D~-~~~~----~~~vA~~~lgIP~v~~~~ 143 (481)
.... ....+......+..++.-+ .+..+||+|++.. ...+ +..++ +..++|++..+.
T Consensus 72 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~-~~~~~p~v~~~h 134 (371)
T PLN02275 72 ---RVLY-ALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLAC-WLRRAKFVIDWH 134 (371)
T ss_pred ---cchH-HHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHH-HHhCCCEEEEcC
Confidence 1112 1111111111222222211 1224999998753 2222 22345 788999987544
No 99
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.16 E-value=0.0011 Score=65.15 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=57.5
Q ss_pred cCCCcEEecccchH---HhhhccCcceEEec----cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccC
Q 045281 340 KDRGLVVESWAPQV---EVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 340 ~~~~~~~~~~vpq~---~lL~~~~~~~~vtH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
...++.+.+++|+. .++..+++ ++.. |..+++.||+.+|+|+|+....+ ....+ . ..|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~-~--~~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVA-G--DAALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCCC----cccee-c--CceeeeCC-
Confidence 34688899999875 46778887 5533 23468999999999999865522 11222 2 34555655
Q ss_pred cccccccCHHHHHHHHHHHhcCch
Q 045281 413 EEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 413 ~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
-+.+++.+++.+++.|++
T Consensus 321 ------~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 321 ------LDPEALAAAIERLLEDPA 338 (365)
T ss_pred ------CCHHHHHHHHHHHhcCHH
Confidence 378999999999999887
No 100
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.11 E-value=0.0045 Score=62.50 Aligned_cols=74 Identities=8% Similarity=0.044 Sum_probs=50.8
Q ss_pred EEecccchHHhhhccCcceEEecc----CchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccC
Q 045281 345 VVESWAPQVEVLNHESVGGFVTHC----GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVS 420 (481)
Q Consensus 345 ~~~~~vpq~~lL~~~~~~~~vtHg----G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (481)
++.++.+..+++...++ ||.-+ =..+++||+++|+|+|+.-..+ + ..+ ..-+-|... . +
T Consensus 287 vf~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~-~--------~ 349 (462)
T PLN02846 287 VYPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY-D--------D 349 (462)
T ss_pred EECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec-C--------C
Confidence 35566677779999998 88764 3468899999999999985443 2 223 231333333 2 4
Q ss_pred HHHHHHHHHHHhcCc
Q 045281 421 AAELEQRVSELMDSE 435 (481)
Q Consensus 421 ~~~l~~av~~il~~~ 435 (481)
.+++.+++.+++.++
T Consensus 350 ~~~~a~ai~~~l~~~ 364 (462)
T PLN02846 350 GKGFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHHHccC
Confidence 578999999998754
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.96 E-value=0.0022 Score=65.82 Aligned_cols=102 Identities=12% Similarity=0.115 Sum_probs=60.5
Q ss_pred HhhhccCcceEEec---cCch-hHHHHHhcCCcEEeccccc--chhhHHHHHHHhhceeeeeccCcccccccCHHHHHHH
Q 045281 354 EVLNHESVGGFVTH---CGWN-SVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQR 427 (481)
Q Consensus 354 ~lL~~~~~~~~vtH---gG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~a 427 (481)
.++..+++ +|.- -|+| +.+||+.+|+|.|+.-..+ |.-.+...-.+. +.|..++.. +++++.++
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~~-------d~~~la~~ 421 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDDF-------NAEDLLRA 421 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCCC-------CHHHHHHH
Confidence 46788888 6643 3554 7889999999999875432 211110000122 678888873 78999999
Q ss_pred HHHHhc---CchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 428 VSELMD---SEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 428 v~~il~---~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
+.+++. +++ . .++++... +...-+-.+.++++++...+
T Consensus 422 i~~~l~~~~~~~---~---~~~~~~~~---~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 422 LRRALELYRQPP---L---WRALQRQA---MAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred HHHHHHHhcCHH---H---HHHHHHHH---hccCCChHHHHHHHHHHHHH
Confidence 999876 332 1 22222222 22355655666666655544
No 102
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.92 E-value=0.015 Score=57.67 Aligned_cols=110 Identities=18% Similarity=0.247 Sum_probs=67.1
Q ss_pred CCcEEeccc--ch---HHhhhccCcceEEecc---Cc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccC
Q 045281 342 RGLVVESWA--PQ---VEVLNHESVGGFVTHC---GW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 342 ~~~~~~~~v--pq---~~lL~~~~~~~~vtHg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
.++.+.++. ++ ..++..+++ |+... |. .++.||+++|+|+|+....+ ....+ +.-..|..++.
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i-~~~~~g~~~~~- 323 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQI-EDGETGFLVDT- 323 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhc-ccCCceEEeCC-
Confidence 457776776 43 356788888 77543 33 48999999999999976533 22334 33245665443
Q ss_pred cccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 413 EEEERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 413 ~~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
.+.+..++.+++.+++ .+.|.+++++.. .+.-+-...++++++.+++
T Consensus 324 --------~~~~a~~i~~ll~~~~~~~~~~~~a~~~~-------~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 324 --------VEEAAVRILYLLRDPELRRKMGANAREHV-------RENFLITRHLKDYLYLISK 371 (372)
T ss_pred --------cHHHHHHHHHHHcCHHHHHHHHHHHHHHH-------HHHcCHHHHHHHHHHHHHh
Confidence 2567789999998876 233333433322 2345555666666665543
No 103
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.91 E-value=0.00034 Score=70.43 Aligned_cols=112 Identities=18% Similarity=0.246 Sum_probs=74.8
Q ss_pred CCCcEEecccchHH---hhhccCcceEEeccC----chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vtHgG----~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
..++.+.+|+++.+ ++..+++.++|...- -.+++||+++|+|+|+.... .....+ +.-+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i-~~~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIV-DNGGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHh-cCCCcEEEeCCC-
Confidence 34688889999765 444433434765543 36899999999999986543 345556 452378888775
Q ss_pred ccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 045281 414 EEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (481)
-+.+++.+++.++++|++ ...++++..++..++.-+...+..+|+
T Consensus 362 -----~~~~~la~~I~~ll~~~~------~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 362 -----PTPNELVSSLSKFIDNEE------EYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred -----CCHHHHHHHHHHHHhCHH------HHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 588999999999999876 222334444444445666666666554
No 104
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.89 E-value=0.033 Score=55.30 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=53.4
Q ss_pred CCCcEEecccchHH---hhhccCcceEE------eccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeec
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFV------THCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVT 410 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~v------tHgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~ 410 (481)
.+|+.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|+.++ ...+ +. +.|..+.
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~-~~~~~~~ 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RY-EDEVVLI 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hh-cCcEEEe
Confidence 36899999998655 57788883321 22333 458999999999998863 1222 23 3234443
Q ss_pred cCcccccccCHHHHHHHHHHHhcCch
Q 045281 411 RSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
. -+++++.+++.+++.++.
T Consensus 324 ~-------~d~~~~~~ai~~~l~~~~ 342 (373)
T cd04950 324 A-------DDPEEFVAAIEKALLEDG 342 (373)
T ss_pred C-------CCHHHHHHHHHHHHhcCC
Confidence 3 378999999999876543
No 105
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.88 E-value=0.0069 Score=62.35 Aligned_cols=84 Identities=7% Similarity=-0.050 Sum_probs=52.1
Q ss_pred CCCcEEecccchH---HhhhccCcceEEec---cCc-hhHHHHHhcCCcEEeccccc--chhhHHHHHHHhhceeeeecc
Q 045281 341 DRGLVVESWAPQV---EVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTR 411 (481)
Q Consensus 341 ~~~~~~~~~vpq~---~lL~~~~~~~~vtH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~ 411 (481)
..++++....++. .++..+++ ++.. -|+ .+.+||+++|+|.|+....+ |.-.....-.+ -|.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeCC
Confidence 3566544333332 46778888 6643 233 37789999999999876533 21111100001 257888887
Q ss_pred CcccccccCHHHHHHHHHHHhcC
Q 045281 412 SEEEERLVSAAELEQRVSELMDS 434 (481)
Q Consensus 412 ~~~~~~~~~~~~l~~av~~il~~ 434 (481)
. +++++.+++.+++..
T Consensus 427 ~-------~~~~l~~~i~~~l~~ 442 (476)
T cd03791 427 Y-------NADALLAALRRALAL 442 (476)
T ss_pred C-------CHHHHHHHHHHHHHH
Confidence 3 789999999998853
No 106
>PLN02949 transferase, transferring glycosyl groups
Probab=97.87 E-value=0.041 Score=56.18 Aligned_cols=113 Identities=13% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCCcEEecccchHH---hhhccCcceEEe---ccCch-hHHHHHhcCCcEEecccccchhhHHHHHHHh-hc-eeeeecc
Q 045281 341 DRGLVVESWAPQVE---VLNHESVGGFVT---HCGWN-SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEE-MK-VGLAVTR 411 (481)
Q Consensus 341 ~~~~~~~~~vpq~~---lL~~~~~~~~vt---HgG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~-~G-~G~~l~~ 411 (481)
.+++.+.+++|+.+ +|..+++ +|+ +=|.| ++.||+++|+|.|+....+--. ..+.+. -| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~---eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM---DIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc---eeeecCCCCcccccC--
Confidence 45788889998654 6778887 663 23444 7999999999999986533100 011010 01 23222
Q ss_pred CcccccccCHHHHHHHHHHHhcC-ch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 412 SEEEERLVSAAELEQRVSELMDS-EK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 412 ~~~~~~~~~~~~l~~av~~il~~-~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
-+.+++++++.+++++ ++ .++|.+++++.. + .-|..+..+++.+.+.+.
T Consensus 407 -------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~-------~-~FS~e~~~~~~~~~i~~l 457 (463)
T PLN02949 407 -------TTVEEYADAILEVLRMRETERLEIAAAARKRA-------N-RFSEQRFNEDFKDAIRPI 457 (463)
T ss_pred -------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-------H-HcCHHHHHHHHHHHHHHH
Confidence 2668999999999985 33 233444444322 1 256666777777666654
No 107
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.87 E-value=0.00032 Score=70.04 Aligned_cols=143 Identities=21% Similarity=0.276 Sum_probs=78.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHh-hhcCCCcEEecccchHH
Q 045281 276 SRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLD-RTKDRGLVVESWAPQVE 354 (481)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~vpq~~ 354 (481)
++.++|.||.+.....++.+..-++.|++.+...+|........ +..+-..+.+ .+..+.+++.++.|+.+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~--------~~~l~~~~~~~Gv~~~Ri~f~~~~~~~e 354 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASG--------EARLRRRFAAHGVDPDRIIFSPVAPREE 354 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTH--------HHHHHHHHHHTTS-GGGEEEEE---HHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHH--------HHHHHHHHHHcCCChhhEEEcCCCCHHH
Confidence 44599999999999999999999999999999999998764211 1111111111 12234677878777654
Q ss_pred hh---hccCcceEE---eccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHH
Q 045281 355 VL---NHESVGGFV---THCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRV 428 (481)
Q Consensus 355 lL---~~~~~~~~v---tHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av 428 (481)
.| ..+++ ++ ..+|.+|++|||+.|||+|.+|=-.=.-..++-+-..+|+.-.+..+ ..+=+..|+
T Consensus 355 hl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~s-------~~eYv~~Av 425 (468)
T PF13844_consen 355 HLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIADS-------EEEYVEIAV 425 (468)
T ss_dssp HHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-SS-------HHHHHHHHH
T ss_pred HHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCCC-------HHHHHHHHH
Confidence 43 44665 54 46799999999999999999995333334443333567877665553 223344444
Q ss_pred HHHhcCch
Q 045281 429 SELMDSEK 436 (481)
Q Consensus 429 ~~il~~~~ 436 (481)
++-.|.+
T Consensus 426 -~La~D~~ 432 (468)
T PF13844_consen 426 -RLATDPE 432 (468)
T ss_dssp -HHHH-HH
T ss_pred -HHhCCHH
Confidence 4556666
No 108
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.86 E-value=0.0033 Score=62.34 Aligned_cols=97 Identities=18% Similarity=0.291 Sum_probs=68.1
Q ss_pred CCcEEecccch-HHhhhccCcceEEecc-C-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccc
Q 045281 342 RGLVVESWAPQ-VEVLNHESVGGFVTHC-G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERL 418 (481)
Q Consensus 342 ~~~~~~~~vpq-~~lL~~~~~~~~vtHg-G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (481)
.++.+.++.++ ..++..+++-++.++. | ..+++||+.+|+|+|+..... .....+ +.-..|..++.
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv~~------- 329 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLVPK------- 329 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEeCC-------
Confidence 46777777665 5588999995555553 3 458999999999999975431 123344 34357888876
Q ss_pred cCHHHHHHHHHHHhcCch-HHHHHHHHHHHHH
Q 045281 419 VSAAELEQRVSELMDSEK-GRAVKERVVEMKE 449 (481)
Q Consensus 419 ~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~ 449 (481)
-+.+++.+++..++.|++ .+.+.+++++.++
T Consensus 330 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 361 (372)
T cd04949 330 GDIEALAEAIIELLNDPKLLQKFSEAAYENAE 361 (372)
T ss_pred CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 388999999999999886 4556666665543
No 109
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.83 E-value=0.00092 Score=64.32 Aligned_cols=327 Identities=16% Similarity=0.095 Sum_probs=168.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTL 80 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (481)
|++.-+++-+|++=.+.-|..|.+++.+.+ +.+..++.+.-.... +.... .++...+..+++. .
T Consensus 1 m~~~Kv~~I~GTRPE~iKmapli~~~~~~~-~~~~~vi~TGQH~d~-----em~~~------~le~~~i~~pdy~----L 64 (383)
T COG0381 1 MKMLKVLTIFGTRPEAIKMAPLVKALEKDP-DFELIVIHTGQHRDY-----EMLDQ------VLELFGIRKPDYD----L 64 (383)
T ss_pred CCceEEEEEEecCHHHHHHhHHHHHHHhCC-CCceEEEEecccccH-----HHHHH------HHHHhCCCCCCcc----h
Confidence 555444555599999999999999999995 355555543322100 01111 1222223222222 1
Q ss_pred CCCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECC--CCchh-HHHHhhccCCCeEEEecccHHHHHHHHHhhh
Q 045281 81 RSPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDF--FCSPA-FQVSSSTLSIPTYYYFTSGGSGLAALLYLPT 157 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~--~~~~~-~~vA~~~lgIP~v~~~~~~~~~~~~~~~~~~ 157 (481)
... .....+.+........+.+++++. +||+|++.. .+..+ ..+| -++.||+..+...--+.
T Consensus 65 ~i~-~~~~tl~~~t~~~i~~~~~vl~~~----kPD~VlVhGDT~t~lA~alaa-~~~~IpV~HvEAGlRt~--------- 129 (383)
T COG0381 65 NIM-KPGQTLGEITGNIIEGLSKVLEEE----KPDLVLVHGDTNTTLAGALAA-FYLKIPVGHVEAGLRTG--------- 129 (383)
T ss_pred hcc-ccCCCHHHHHHHHHHHHHHHHHhh----CCCEEEEeCCcchHHHHHHHH-HHhCCceEEEecccccC---------
Confidence 111 112224555666777888888887 999988644 44444 4555 99999998553322100
Q ss_pred hccCCCCcccccCCcccCCCCCCCCCCCcCCCcccCCCchhHHHHHHHHhhhhcccEEEEeCchhhhHHHHHHHHcccCC
Q 045281 158 LHKNTTKSFRELGSTLLNYPGLPPFPARDMAEPMHDREGKAYKGFVDTGIQMAKSAGLIVNTFELLEERAIKAMLEGQCT 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~ 237 (481)
...+|. ..+ +. ..-.-++..+.++-.. .. .......
T Consensus 130 ---------------~~~~PE---------------E~N---R~-----l~~~~S~~hfapte~a--r~--nLl~EG~-- 165 (383)
T COG0381 130 ---------------DLYFPE---------------EIN---RR-----LTSHLSDLHFAPTEIA--RK--NLLREGV-- 165 (383)
T ss_pred ---------------CCCCcH---------------HHH---HH-----HHHHhhhhhcCChHHH--HH--HHHHcCC--
Confidence 000110 000 00 0000011112211111 00 1111111
Q ss_pred CCCCCCCeEeccccCCCCCCCC--CCCCcccccc--cccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHH----hCCCcE
Q 045281 238 PGETLPPFYCIGPVVGGGNGEN--RGRDRHESLS--WLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLE----RSGVKF 309 (481)
Q Consensus 238 ~~~~~~~~~~vGpl~~~~~~~~--~~~~~~~l~~--~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~----~~~~~~ 309 (481)
+-.++..+|-...+.-... ....+..... ..++.. ..++||+=-..+.. +-+..+++++. .. ..+
T Consensus 166 ---~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~~~~~~~--~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~ 238 (383)
T COG0381 166 ---PEKRIFVTGNTVIDALLNTRDRVLEDSKILAKGLDDKDK--KYILVTAHRRENVG-EPLEEICEALREIAEEY-PDV 238 (383)
T ss_pred ---CccceEEeCChHHHHHHHHHhhhccchhhHHhhhccccC--cEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCc
Confidence 1134666774432211000 0011111111 222222 28888865544443 44555555544 34 344
Q ss_pred EEEEeCCCCCCccccccccccCchhh-HhhhcC-CCcEEe---cccchHHhhhccCcceEEeccCchhHHHHHhcCCcEE
Q 045281 310 LWVVRAPAPDSVENRSSLESLLPEGF-LDRTKD-RGLVVE---SWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPML 384 (481)
Q Consensus 310 iw~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~~~~---~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v 384 (481)
..++..... ..+ .++ ..++++ +++.+. +|.+...|+.++-+ ++|-.|. -.-||-..|+|.+
T Consensus 239 ~viyp~H~~----------~~v-~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl 304 (383)
T COG0381 239 IVIYPVHPR----------PRV-RELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVL 304 (383)
T ss_pred eEEEeCCCC----------hhh-hHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEE
Confidence 555544311 111 112 233443 356655 46778889999988 9998763 3458999999999
Q ss_pred ecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCch
Q 045281 385 AWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
++=..-+|+. ++ +. |.-+.+.. +.+.|.+++..++++++
T Consensus 305 ~lR~~TERPE---~v-~a-gt~~lvg~--------~~~~i~~~~~~ll~~~~ 343 (383)
T COG0381 305 VLRDTTERPE---GV-EA-GTNILVGT--------DEENILDAATELLEDEE 343 (383)
T ss_pred eeccCCCCcc---ce-ec-CceEEeCc--------cHHHHHHHHHHHhhChH
Confidence 9988888887 44 33 55555544 56999999999999987
No 110
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.74 E-value=0.00035 Score=60.97 Aligned_cols=92 Identities=16% Similarity=0.294 Sum_probs=66.8
Q ss_pred CCCcEEecccch---HHhhhccCcceEEec----cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 341 DRGLVVESWAPQ---VEVLNHESVGGFVTH----CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~~~~~~~vpq---~~lL~~~~~~~~vtH----gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
..++.+.+++++ ..++..+++ +|+. +...++.||+.+|+|+|+. |-..+...+ ..-+.|..++.
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~-~~~~~g~~~~~-- 142 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEII-NDGVNGFLFDP-- 142 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHS-GTTTSEEEEST--
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceee-ccccceEEeCC--
Confidence 457888899872 558888888 7776 5667999999999999985 445555556 45356888888
Q ss_pred ccccccCHHHHHHHHHHHhcCch-HHHHHHHHHH
Q 045281 414 EEERLVSAAELEQRVSELMDSEK-GRAVKERVVE 446 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~ 446 (481)
.+.+++.++|.+++.+++ .+.+.+++++
T Consensus 143 -----~~~~~l~~~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 143 -----NDIEELADAIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp -----TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence 489999999999999887 3445555543
No 111
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.72 E-value=0.017 Score=59.57 Aligned_cols=102 Identities=19% Similarity=0.283 Sum_probs=66.3
Q ss_pred CCcEEecccchHHhhhccCcceEEe---ccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccccc
Q 045281 342 RGLVVESWAPQVEVLNHESVGGFVT---HCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEER 417 (481)
Q Consensus 342 ~~~~~~~~vpq~~lL~~~~~~~~vt---HgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 417 (481)
+++.+.++.+..+++..+++ +|. .=|. .+++||+++|+|+|+.-..+ .+...+ +.-.-|..++.....+.
T Consensus 376 ~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~d 449 (500)
T TIGR02918 376 DYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEEDD 449 (500)
T ss_pred CeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCccccc
Confidence 46788889888899999999 664 3344 58999999999999975431 133344 34135777763100100
Q ss_pred ccC-HHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 045281 418 LVS-AAELEQRVSELMDSEKGRAVKERVVEMKE 449 (481)
Q Consensus 418 ~~~-~~~l~~av~~il~~~~~~~~~~~a~~l~~ 449 (481)
.-+ .+.+++++.++++++..++|.+++.+.++
T Consensus 450 ~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~ 482 (500)
T TIGR02918 450 EDQIITALAEKIVEYFNSNDIDAFHEYSYQIAE 482 (500)
T ss_pred hhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 012 78899999999964444556666665443
No 112
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.71 E-value=0.0086 Score=57.66 Aligned_cols=202 Identities=18% Similarity=0.214 Sum_probs=107.5
Q ss_pred CeEecc-ccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHh-----CCCcEEEEEeCCC
Q 045281 244 PFYCIG-PVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLER-----SGVKFLWVVRAPA 317 (481)
Q Consensus 244 ~~~~vG-pl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-----~~~~~iw~~~~~~ 317 (481)
...||| |+....+-. .....+.+-+....+..++.+--||-.+.-...+..+.++.+. .+.+|+.-+...
T Consensus 157 ~~~yVGHpl~d~i~~~---~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~- 232 (381)
T COG0763 157 PCTYVGHPLADEIPLL---PDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNA- 232 (381)
T ss_pred CeEEeCChhhhhcccc---ccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcH-
Confidence 489999 776654321 2223343444444444599999999764333333334444443 245665554331
Q ss_pred CCCccccccccccCchhhHhhhc-CCCcEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccc-ccchhhH
Q 045281 318 PDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL-YAEQKMI 395 (481)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~-~~DQ~~n 395 (481)
.....-........ ..++++.+-- -...+..+++ .+.-+| .-+.|+.-+|+|||+.=- ..=-++.
T Consensus 233 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~aD~--al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~i 299 (381)
T COG0763 233 ---------KYRRIIEEALKWEVAGLSLILIDGE-KRKAFAAADA--ALAASG-TATLEAALAGTPMVVAYKVKPITYFI 299 (381)
T ss_pred ---------HHHHHHHHHhhccccCceEEecCch-HHHHHHHhhH--HHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHH
Confidence 00000011100000 0112221211 1236667777 555544 346799999999998621 1112344
Q ss_pred HHHHHHhhce--------eeeec----cCcccccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHH
Q 045281 396 KAVVVEEMKV--------GLAVT----RSEEEERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSR 462 (481)
Q Consensus 396 a~~v~~~~G~--------G~~l~----~~~~~~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~ 462 (481)
+++... +.. |..+- .+ . .+++.|.+++..++.|+. .++++++..+++..++ ++++++
T Consensus 300 ak~lvk-~~yisLpNIi~~~~ivPEliq~--~---~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e 369 (381)
T COG0763 300 AKRLVK-LPYVSLPNILAGREIVPELIQE--D---CTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASE 369 (381)
T ss_pred HHHhcc-CCcccchHHhcCCccchHHHhh--h---cCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHH
Confidence 555432 221 11111 12 3 789999999999999884 4567777777777766 456777
Q ss_pred HHHHHHHHHH
Q 045281 463 VALDNLVESF 472 (481)
Q Consensus 463 ~~~~~l~~~~ 472 (481)
.+.+.+.+.+
T Consensus 370 ~aA~~vl~~~ 379 (381)
T COG0763 370 IAAQAVLELL 379 (381)
T ss_pred HHHHHHHHHh
Confidence 7777766654
No 113
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.70 E-value=0.033 Score=57.28 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=60.4
Q ss_pred CCCcEEecccchHHhhhccCcceEEecc---C-chhHHHHHhcCCcEEecccccchhhHHHHHHHhh-----c-eeeeec
Q 045281 341 DRGLVVESWAPQVEVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEM-----K-VGLAVT 410 (481)
Q Consensus 341 ~~~~~~~~~vpq~~lL~~~~~~~~vtHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~-----G-~G~~l~ 410 (481)
.+++.+.+...-.+++..+++ +|... | -+++.||+++|+|+|+... ......+ +.. | .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv-~~~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELI-EGADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHh-cCCcccccCCceEEEC
Confidence 357888886667788999998 65432 3 3689999999999999543 3333444 331 2 688887
Q ss_pred cCcccccccCHHHHHHHHHHHhcCch
Q 045281 411 RSEEEERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~av~~il~~~~ 436 (481)
. -+++++.+++.++++|++
T Consensus 426 ~-------~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 426 P-------ADPEALARAILRLLKDPE 444 (475)
T ss_pred C-------CCHHHHHHHHHHHhcCHH
Confidence 7 488999999999999887
No 114
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.65 E-value=0.00037 Score=68.54 Aligned_cols=127 Identities=12% Similarity=0.159 Sum_probs=84.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchH---Hhh
Q 045281 280 LLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQV---EVL 356 (481)
Q Consensus 280 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~---~lL 356 (481)
.++..|++. ....+..++++++..+.+++++ |.+. ..+.+.+ ....|+.+.+++|+. .++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~iv-G~g~-------------~~~~l~~-~~~~~V~~~g~~~~~~~~~~~ 259 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVI-GDGP-------------ELDRLRA-KAGPNVTFLGRVSDEELRDLY 259 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEE-ECCh-------------hHHHHHh-hcCCCEEEecCCCHHHHHHHH
Confidence 344567766 2344677888888877665554 4431 0112222 335689999999974 478
Q ss_pred hccCcceEEeccCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCc
Q 045281 357 NHESVGGFVTHCGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSE 435 (481)
Q Consensus 357 ~~~~~~~~vtHgG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~ 435 (481)
..+++-++-+.-|. .++.||+++|+|+|+....+ ....+ +.-+.|..++.. +++.+.+++..+++|+
T Consensus 260 ~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~~~~-------~~~~la~~i~~l~~~~ 327 (351)
T cd03804 260 ARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILFEEQ-------TVESLAAAVERFEKNE 327 (351)
T ss_pred HhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEeCCC-------CHHHHHHHHHHHHhCc
Confidence 88898333344444 35779999999999986543 33334 332578888774 7889999999999987
No 115
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0012 Score=53.12 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=72.7
Q ss_pred EEEecCCCCCCCHHHHH--HHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecc--cc-hHH
Q 045281 280 LLLCFGSLGSFSCKQLK--EMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESW--AP-QVE 354 (481)
Q Consensus 280 v~vs~GS~~~~~~~~~~--~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--vp-q~~ 354 (481)
++||.||....=...+. ++.+-.+....++|..+|.++. .|- .++.+.+| .+ -+.
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~------------kpv--------agl~v~~F~~~~kiQs 61 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI------------KPV--------AGLRVYGFDKEEKIQS 61 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc------------ccc--------cccEEEeechHHHHHH
Confidence 68999998521111111 1333344445678999987521 120 12334444 44 355
Q ss_pred hhhccCcceEEeccCchhHHHHHhcCCcEEeccccc--------chhhHHHHHHHhhceeeeecc
Q 045281 355 VLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA--------EQKMIKAVVVEEMKVGLAVTR 411 (481)
Q Consensus 355 lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~--------DQ~~na~~v~~~~G~G~~l~~ 411 (481)
+...+++ +|+|+|.||++.++..++|.+++|-.. .|-..|..++ +++.=+...+
T Consensus 62 li~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~sp 123 (161)
T COG5017 62 LIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVACSP 123 (161)
T ss_pred HhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEEcC
Confidence 7777777 999999999999999999999999744 6899999996 4577666664
No 116
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.58 E-value=0.12 Score=53.05 Aligned_cols=114 Identities=14% Similarity=0.166 Sum_probs=70.2
Q ss_pred CCCcEEecccch-HHhhhccCcceEEec---cC-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccc
Q 045281 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415 (481)
Q Consensus 341 ~~~~~~~~~vpq-~~lL~~~~~~~~vtH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
.+++.+.+|..+ ..+|..+++ ||.. -| -+++.||+++|+|+|+.... .+...+ +.-..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV-~dG~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECF-IEGVSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHc-ccCCcEEEECCC---
Confidence 357888888654 457899999 7753 45 46999999999999987653 344555 342568888764
Q ss_pred ccccCHHHHHHHHH---HHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 416 ERLVSAAELEQRVS---ELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 416 ~~~~~~~~l~~av~---~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
+.+.+.+++. .+..... ....++...++.+.+..+....+++..+.+..
T Consensus 524 ----D~~aLa~ai~lA~aL~~ll~------~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 524 ----QTVNLDQACRYAEKLVNLWR------SRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred ----ChhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 4455555542 2222211 11223333444344567777777777766554
No 117
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.57 E-value=0.0045 Score=61.67 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=74.1
Q ss_pred CCcEEecccchHH---hhhccCcceEEec----cCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 342 RGLVVESWAPQVE---VLNHESVGGFVTH----CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 342 ~~~~~~~~vpq~~---lL~~~~~~~~vtH----gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
.++.+.+++|+.+ ++..+++ +|.. -|. .++.||+++|+|+|+....+ +...+ +.-..|..+...
T Consensus 257 ~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv-~~~~~G~~l~~~- 328 (380)
T PRK15484 257 DRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFV-LEGITGYHLAEP- 328 (380)
T ss_pred CcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhc-ccCCceEEEeCC-
Confidence 4678889998644 6888998 6643 343 57789999999999986532 33344 342467755443
Q ss_pred ccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 414 EEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
.+++++.+++.++++|++ .+ ++++..++...+.-+-....+++.+.+.+
T Consensus 329 -----~d~~~la~~I~~ll~d~~---~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 -----MTSDSIISDINRTLADPE---LT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred -----CCHHHHHHHHHHHHcCHH---HH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 588999999999999886 32 22333322222345655666666666554
No 118
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.33 E-value=0.0014 Score=54.57 Aligned_cols=80 Identities=25% Similarity=0.360 Sum_probs=50.3
Q ss_pred CCCcEEecccch-HHhhhccCcceEEec--cC-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccc
Q 045281 341 DRGLVVESWAPQ-VEVLNHESVGGFVTH--CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEE 416 (481)
Q Consensus 341 ~~~~~~~~~vpq-~~lL~~~~~~~~vtH--gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
.+|+.+.+|++. .+++..+++.+..+. .| .+++.|++.+|+|+|+.+.. ....+ +..+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~-~~~~~~~~~-~----- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIV-EEDGCGVLV-A----- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhhe-eecCCeEEE-C-----
Confidence 358999999874 558889999555442 23 38999999999999998761 22233 234888877 3
Q ss_pred cccCHHHHHHHHHHHhcC
Q 045281 417 RLVSAAELEQRVSELMDS 434 (481)
Q Consensus 417 ~~~~~~~l~~av~~il~~ 434 (481)
-+++++.+++.++++|
T Consensus 120 --~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 --NDPEELAEAIERLLND 135 (135)
T ss_dssp --T-HHHHHHHHHHHHH-
T ss_pred --CCHHHHHHHHHHHhcC
Confidence 3889999999999865
No 119
>PLN02316 synthase/transferase
Probab=97.27 E-value=0.46 Score=52.63 Aligned_cols=118 Identities=7% Similarity=-0.070 Sum_probs=67.9
Q ss_pred CCcEEecccchH---HhhhccCcceEEec---cCc-hhHHHHHhcCCcEEeccccc--chhhHH----HH--HHHhhcee
Q 045281 342 RGLVVESWAPQV---EVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYA--EQKMIK----AV--VVEEMKVG 406 (481)
Q Consensus 342 ~~~~~~~~vpq~---~lL~~~~~~~~vtH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~na----~~--v~~~~G~G 406 (481)
+++.+....+.. .++..+++ |+.. =|+ .+.+||+++|+|.|+.-..+ |.-... .+ ....-+-|
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tG 977 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNG 977 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCce
Confidence 345554444442 47888888 7743 233 48899999999998875533 221111 00 00001468
Q ss_pred eeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 045281 407 LAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 407 ~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (481)
..++. .+++.|..+|.+++.+. ..+...++...++.+...-|-.+.+++.++-..
T Consensus 978 flf~~-------~d~~aLa~AL~raL~~~-----~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~ 1032 (1036)
T PLN02316 978 FSFDG-------ADAAGVDYALNRAISAW-----YDGRDWFNSLCKRVMEQDWSWNRPALDYMELYH 1032 (1036)
T ss_pred EEeCC-------CCHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 88877 48899999999998752 122233444444444445665555555544433
No 120
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.26 E-value=0.26 Score=49.45 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=67.6
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcE-EEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc-h---H
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERSGVKF-LWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP-Q---V 353 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~-iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp-q---~ 353 (481)
.+++..|............+++|+...+..+ ++.+|.+. .. ...++...++.. + .
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~---------------~~-----~~~~v~~~g~~~~~~~l~ 301 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS---------------PF-----TAGNVVNHGFETDKRKLM 301 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC---------------cc-----cccceEEecCcCCHHHHH
Confidence 3444455533223333566888888765443 45555431 00 012444445543 2 4
Q ss_pred HhhhccCcceEEecc---C-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHH
Q 045281 354 EVLNHESVGGFVTHC---G-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQR 427 (481)
Q Consensus 354 ~lL~~~~~~~~vtHg---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~a 427 (481)
+++..+++ ||.-. | -.+++||+++|+|+|+....+ ....+ +. +-|..++.. +.++|+++
T Consensus 302 ~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~~-------d~~~La~~ 364 (405)
T PRK10125 302 SALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSEE-------EVLQLAQL 364 (405)
T ss_pred HHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECCC-------CHHHHHhc
Confidence 46667888 77643 2 358899999999999997765 22234 44 579888874 67788764
No 121
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.22 E-value=0.38 Score=50.61 Aligned_cols=76 Identities=12% Similarity=0.071 Sum_probs=53.0
Q ss_pred cEEecccchH-HhhhccCcceEEec---cC-chhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccc
Q 045281 344 LVVESWAPQV-EVLNHESVGGFVTH---CG-WNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERL 418 (481)
Q Consensus 344 ~~~~~~vpq~-~lL~~~~~~~~vtH---gG-~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (481)
+.+.++.++. .++..+++ ||.- =| ..+++||+++|+|+|+.-..+... + .. |.+..+.
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V-~~-g~nGll~-------- 665 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----F-RS-FPNCLTY-------- 665 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----E-ee-cCCeEec--------
Confidence 5566777755 48999998 7763 23 368899999999999987755321 3 22 3333322
Q ss_pred cCHHHHHHHHHHHhcCch
Q 045281 419 VSAAELEQRVSELMDSEK 436 (481)
Q Consensus 419 ~~~~~l~~av~~il~~~~ 436 (481)
-+.+++.+++.+++.++.
T Consensus 666 ~D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 666 KTSEDFVAKVKEALANEP 683 (794)
T ss_pred CCHHHHHHHHHHHHhCch
Confidence 267999999999998775
No 122
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.80 E-value=0.0076 Score=58.86 Aligned_cols=111 Identities=18% Similarity=0.326 Sum_probs=77.8
Q ss_pred CCcEEecccchHHhhhc--cCcceEEecc-------Cc------hhHHHHHhcCCcEEecccccchhhHHHHHHHhhcee
Q 045281 342 RGLVVESWAPQVEVLNH--ESVGGFVTHC-------GW------NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG 406 (481)
Q Consensus 342 ~~~~~~~~vpq~~lL~~--~~~~~~vtHg-------G~------gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 406 (481)
.|+.+.+|+|+.++..+ .+.+++...- .+ +-+.+.+++|+|+|+.+ +...+..| ++-++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V-~~~~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFI-VENGLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHH-HhCCce
Confidence 58999999998776432 1332222211 11 23677899999999864 45677777 455899
Q ss_pred eeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 045281 407 LAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVES 471 (481)
Q Consensus 407 ~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 471 (481)
+.++. . +++.+++.++ .+++.++|+++++++++.++. |.-.++++++++..
T Consensus 282 ~~v~~-------~--~el~~~l~~~-~~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 282 FVVDS-------L--EELPEIIDNI-TEEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred EEeCC-------H--HHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 99874 2 5788888875 344477899999999999985 66677777777653
No 123
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.062 Score=54.24 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=94.5
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHh--hhcCCCcEEecccch
Q 045281 275 PSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLD--RTKDRGLVVESWAPQ 352 (481)
Q Consensus 275 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~vpq 352 (481)
|++.+||+||+......++.+..-++-|+..+..++|..++++... ....+- +..+ .+..+.+++.+-.|.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~------~~~~l~-~la~~~Gv~~eRL~f~p~~~~ 499 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE------INARLR-DLAEREGVDSERLRFLPPAPN 499 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH------HHHHHH-HHHHHcCCChhheeecCCCCC
Confidence 3456999999999999999999999999999999999998752221 111111 1111 123456777776664
Q ss_pred ---HHhhhccCcceEEe---ccCchhHHHHHhcCCcEEecccccchh--hHHHHHHHhhceeeeeccCcccccccCHHHH
Q 045281 353 ---VEVLNHESVGGFVT---HCGWNSVLEGVCAGVPMLAWPLYAEQK--MIKAVVVEEMKVGLAVTRSEEEERLVSAAEL 424 (481)
Q Consensus 353 ---~~lL~~~~~~~~vt---HgG~gs~~eal~~GvP~v~~P~~~DQ~--~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l 424 (481)
.+=+..+++ |.- -||+.|+.|+|..|||+|..+ ++|| .|+.-++..+|+--.+..+ ..+=+
T Consensus 500 ~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~s-------~~dYV 568 (620)
T COG3914 500 EDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVADS-------RADYV 568 (620)
T ss_pred HHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcCC-------HHHHH
Confidence 344445666 653 699999999999999999985 7776 3566666666766666654 34556
Q ss_pred HHHHH
Q 045281 425 EQRVS 429 (481)
Q Consensus 425 ~~av~ 429 (481)
..+|.
T Consensus 569 ~~av~ 573 (620)
T COG3914 569 EKAVA 573 (620)
T ss_pred HHHHH
Confidence 66663
No 124
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.54 E-value=0.075 Score=53.96 Aligned_cols=125 Identities=21% Similarity=0.318 Sum_probs=84.4
Q ss_pred CCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHh-----hhcCCCcEEecc
Q 045281 275 PSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLD-----RTKDRGLVVESW 349 (481)
Q Consensus 275 ~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~ 349 (481)
|++.+||.+|--....+++.++.-++-|++.+..++|....+-.+ | ..|+. .+.++.+++.+-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g----e--------~rf~ty~~~~Gl~p~riifs~v 823 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG----E--------QRFRTYAEQLGLEPDRIIFSPV 823 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc----h--------HHHHHHHHHhCCCccceeeccc
Confidence 344599999888888899999999999999999999999875221 1 12211 123456666555
Q ss_pred cchHH-----hhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccC
Q 045281 350 APQVE-----VLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 350 vpq~~-----lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
+.-.+ .|....+.-+.+. |..|.++.|+.|+|||.+|--.--...|.-.--.+|+|-.+.++
T Consensus 824 a~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~ 890 (966)
T KOG4626|consen 824 AAKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKN 890 (966)
T ss_pred cchHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhh
Confidence 54322 2222222224443 78999999999999999998655555554333567999877664
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.33 E-value=0.66 Score=41.58 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=36.9
Q ss_pred CCCcEEecccch----HHhhhccCcceEEeccC----chhHHHHHhcCCcEEecccccch
Q 045281 341 DRGLVVESWAPQ----VEVLNHESVGGFVTHCG----WNSVLEGVCAGVPMLAWPLYAEQ 392 (481)
Q Consensus 341 ~~~~~~~~~vpq----~~lL~~~~~~~~vtHgG----~gs~~eal~~GvP~v~~P~~~DQ 392 (481)
..|+.+.+++++ ..++..+++ +++-.. .+++.||+.+|+|+|+.+..+.+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 457888888632 224444777 777776 68999999999999998875543
No 126
>PHA01633 putative glycosyl transferase group 1
Probab=96.15 E-value=0.088 Score=51.04 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=55.5
Q ss_pred CCCcEEe---cccchH---HhhhccCcceEEec---cCc-hhHHHHHhcCCcEEeccc------ccch------hhHHHH
Q 045281 341 DRGLVVE---SWAPQV---EVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPL------YAEQ------KMIKAV 398 (481)
Q Consensus 341 ~~~~~~~---~~vpq~---~lL~~~~~~~~vtH---gG~-gs~~eal~~GvP~v~~P~------~~DQ------~~na~~ 398 (481)
..++.+. +++++. .++..+++ ||.- =|+ .+++||+++|+|+|+--. .+|+ ..+...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 3467776 455543 57788888 7764 344 578899999999998633 2333 222222
Q ss_pred HHH-hhceeeeeccCcccccccCHHHHHHHHHHHhcC
Q 045281 399 VVE-EMKVGLAVTRSEEEERLVSAAELEQRVSELMDS 434 (481)
Q Consensus 399 v~~-~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~ 434 (481)
.++ .-|.|..++. .+++++++++..++..
T Consensus 278 ~~~~~~g~g~~~~~-------~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 278 YYDKEHGQKWKIHK-------FQIEDMANAIILAFEL 307 (335)
T ss_pred hcCcccCceeeecC-------CCHHHHHHHHHHHHhc
Confidence 221 2266667665 6999999999999654
No 127
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.79 E-value=2.5 Score=42.62 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=58.4
Q ss_pred HHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeee-eccCcccccccCHHHHHHHHHHH
Q 045281 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLA-VTRSEEEERLVSAAELEQRVSEL 431 (481)
Q Consensus 353 ~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~-l~~~~~~~~~~~~~~l~~av~~i 431 (481)
..+++++++ +|..= .=++.-|+..|+|.+.+++ |.-.. .-+ +.+|..-. ++.. + ++.++|.+.+.++
T Consensus 322 ~~iIs~~dl--~ig~R-lHa~I~a~~~gvP~i~i~Y--~~K~~-~~~-~~lg~~~~~~~~~--~---l~~~~Li~~v~~~ 389 (426)
T PRK10017 322 GKILGACEL--TVGTR-LHSAIISMNFGTPAIAINY--EHKSA-GIM-QQLGLPEMAIDIR--H---LLDGSLQAMVADT 389 (426)
T ss_pred HHHHhhCCE--EEEec-chHHHHHHHcCCCEEEeee--hHHHH-HHH-HHcCCccEEechh--h---CCHHHHHHHHHHH
Confidence 378888888 88632 2256778899999999998 32222 233 56787755 5554 5 8999999999999
Q ss_pred hcCchHHHHHHHHHHHHHHHH
Q 045281 432 MDSEKGRAVKERVVEMKEAAA 452 (481)
Q Consensus 432 l~~~~~~~~~~~a~~l~~~~~ 452 (481)
++|.+ +++++.++-.+.++
T Consensus 390 ~~~r~--~~~~~l~~~v~~~r 408 (426)
T PRK10017 390 LGQLP--ALNARLAEAVSRER 408 (426)
T ss_pred HhCHH--HHHHHHHHHHHHHH
Confidence 98865 34444444444443
No 128
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.62 E-value=2 Score=40.38 Aligned_cols=109 Identities=11% Similarity=0.028 Sum_probs=72.5
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHH
Q 045281 9 TSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPA 88 (481)
Q Consensus 9 ~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 88 (481)
=.+-.-|+.-+..|-++|.++| |+|.+.+-... ...+.+..+ |+.+..+..-... ....
T Consensus 6 DI~n~~hvhfFk~lI~elekkG--~ev~iT~rd~~-----~v~~LLd~y-----gf~~~~Igk~g~~---------tl~~ 64 (346)
T COG1817 6 DIGNPPHVHFFKNLIWELEKKG--HEVLITCRDFG-----VVTELLDLY-----GFPYKSIGKHGGV---------TLKE 64 (346)
T ss_pred EcCCcchhhHHHHHHHHHHhCC--eEEEEEEeecC-----cHHHHHHHh-----CCCeEeecccCCc---------cHHH
Confidence 3455679999999999999999 99999874322 223333332 6666665432111 2233
Q ss_pred HHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEeccc
Q 045281 89 LAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSG 145 (481)
Q Consensus 89 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~ 145 (481)
.+.+... ..-.|.+++.++ +||+.+. -.++....+| -.+|+|.+.+.-..
T Consensus 65 Kl~~~~e-R~~~L~ki~~~~----kpdv~i~-~~s~~l~rva-fgLg~psIi~~D~e 114 (346)
T COG1817 65 KLLESAE-RVYKLSKIIAEF----KPDVAIG-KHSPELPRVA-FGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHHHH-HHHHHHHHHhhc----CCceEee-cCCcchhhHH-hhcCCceEEecCCh
Confidence 3333332 233566676676 9999999 5688889999 99999999886654
No 129
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=95.31 E-value=0.57 Score=48.16 Aligned_cols=109 Identities=11% Similarity=0.050 Sum_probs=66.3
Q ss_pred CCcEEecccchH---HhhhccCcceEEec---cCch-hHHHHHhcCCcEEecccccchhhHHHHHHHhh------ceeee
Q 045281 342 RGLVVESWAPQV---EVLNHESVGGFVTH---CGWN-SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEM------KVGLA 408 (481)
Q Consensus 342 ~~~~~~~~vpq~---~lL~~~~~~~~vtH---gG~g-s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~------G~G~~ 408 (481)
.++.+....+.. .++..+++ ++.- -|.| +.+||+++|+|.|+....+ ....+ +.- +.|..
T Consensus 346 ~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l 418 (473)
T TIGR02095 346 GNVRVIIGYDEALAHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFL 418 (473)
T ss_pred CcEEEEEcCCHHHHHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEE
Confidence 455555444543 47788888 6643 2444 7889999999999876533 11122 121 67888
Q ss_pred eccCcccccccCHHHHHHHHHHHhc----CchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 045281 409 VTRSEEEERLVSAAELEQRVSELMD----SEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 409 l~~~~~~~~~~~~~~l~~av~~il~----~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (481)
++. -+++++.+++.+++. +++ .+ +++++.. +...-|-.+..+++++..+
T Consensus 419 ~~~-------~d~~~la~~i~~~l~~~~~~~~---~~---~~~~~~~---~~~~fsw~~~a~~~~~~Y~ 471 (473)
T TIGR02095 419 FEE-------YDPGALLAALSRALRLYRQDPS---LW---EALQKNA---MSQDFSWDKSAKQYVELYR 471 (473)
T ss_pred eCC-------CCHHHHHHHHHHHHHHHhcCHH---HH---HHHHHHH---hccCCCcHHHHHHHHHHHH
Confidence 877 378999999999886 544 11 2222221 1234565566666666544
No 130
>PRK14098 glycogen synthase; Provisional
Probab=94.91 E-value=0.47 Score=48.92 Aligned_cols=116 Identities=12% Similarity=0.090 Sum_probs=69.3
Q ss_pred CCCcEEecccchH---HhhhccCcceEEecc---Cc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 341 DRGLVVESWAPQV---EVLNHESVGGFVTHC---GW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 341 ~~~~~~~~~vpq~---~lL~~~~~~~~vtHg---G~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
+.++.+..+++.. .++..+++ ++... |. .+.+||+++|+|.|+....+-........ +.-+.|..++.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~~~-- 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIFHD-- 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEeCC--
Confidence 3578787888764 57888888 76533 33 36789999999888876533111110111 12267888876
Q ss_pred ccccccCHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 414 EEERLVSAAELEQRVSELM---DSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il---~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
.+++.+.+++.+++ .|++ .+ ++++. +++...-|-.+.++++++-..+.
T Consensus 436 -----~d~~~la~ai~~~l~~~~~~~--~~----~~~~~---~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 436 -----YTPEALVAKLGEALALYHDEE--RW----EELVL---EAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred -----CCHHHHHHHHHHHHHHHcCHH--HH----HHHHH---HHhcCCCChHHHHHHHHHHHHHH
Confidence 47899999998875 3443 12 12221 22234566656666666555443
No 131
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=94.86 E-value=0.28 Score=37.50 Aligned_cols=82 Identities=10% Similarity=0.192 Sum_probs=50.7
Q ss_pred ccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhce-eeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHH
Q 045281 367 HCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKV-GLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVV 445 (481)
Q Consensus 367 HgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~-G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~ 445 (481)
+|-...+.|++++|+|+|+-+. ......+ +. |. ++..+ +.+++.+++..+++|+. ..++.++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~~~~~---------~~~el~~~i~~ll~~~~--~~~~ia~ 71 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHIITYN---------DPEELAEKIEYLLENPE--ERRRIAK 71 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeEEEEC---------CHHHHHHHHHHHHCCHH--HHHHHHH
Confidence 4445689999999999999865 3333333 23 42 22222 56999999999999887 1233333
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHH
Q 045281 446 EMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 446 ~l~~~~~~~~~~~g~~~~~~~~l~ 469 (481)
+-.+.+ ....+..+.+++|+
T Consensus 72 ~a~~~v----~~~~t~~~~~~~il 91 (92)
T PF13524_consen 72 NARERV----LKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHHH----HHhCCHHHHHHHHH
Confidence 333333 33566666666654
No 132
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=94.73 E-value=1.3 Score=42.82 Aligned_cols=136 Identities=11% Similarity=0.053 Sum_probs=75.3
Q ss_pred CcEEEEecCC-CC--CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccch-
Q 045281 277 RSVLLLCFGS-LG--SFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQ- 352 (481)
Q Consensus 277 ~~~v~vs~GS-~~--~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq- 352 (481)
++.|.+.-|+ .. ..+.+.+.++++.+.+.+.++++..+++. +....+.+.+.....++.-.--+++
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~----------e~~~~~~i~~~~~~~~l~g~~sL~el 248 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA----------EKQRAERIAEALPGAVVLPKMSLAEV 248 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH----------HHHHHHHHHhhCCCCeecCCCCHHHH
Confidence 3455555554 33 56778888999998776777666544320 1011112222222112211112334
Q ss_pred HHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhcee-eeeccCcccccccCHHHHHHHHHHH
Q 045281 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG-LAVTRSEEEERLVSAAELEQRVSEL 431 (481)
Q Consensus 353 ~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~~~~~~~l~~av~~i 431 (481)
..+++++++ +|+. -.|.++=|...|+|.|++ | + +.+..+. .=+|-. ..+... .....+++++.++++++
T Consensus 249 ~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~l-f-g--~t~p~~~-~P~~~~~~~~~~~--~~~~I~~~~V~~ai~~~ 318 (319)
T TIGR02193 249 AALLAGADA--VVGV-DTGLTHLAAALDKPTVTL-Y-G--ATDPGRT-GGYGKPNVALLGE--SGANPTPDEVLAALEEL 318 (319)
T ss_pred HHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEE-E-C--CCCHhhc-ccCCCCceEEccC--ccCCCCHHHHHHHHHhh
Confidence 568999999 9987 578889999999999986 2 2 1111211 011211 111111 12338999999999876
Q ss_pred h
Q 045281 432 M 432 (481)
Q Consensus 432 l 432 (481)
|
T Consensus 319 ~ 319 (319)
T TIGR02193 319 L 319 (319)
T ss_pred C
Confidence 4
No 133
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.57 E-value=0.056 Score=41.90 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=45.7
Q ss_pred CCcccccccccCCCCCcEEEEecCCCCCC---C--HHHHHHHHHHHHhCCCcEEEEEeCC
Q 045281 262 RDRHESLSWLDSKPSRSVLLLCFGSLGSF---S--CKQLKEMAIGLERSGVKFLWVVRAP 316 (481)
Q Consensus 262 ~~~~~l~~~l~~~~~~~~v~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~iw~~~~~ 316 (481)
+....+..|+...+.++.|.||+||.... . ...+..+++++...+..+|..+...
T Consensus 25 NG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 25 NGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp -SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 44567888999999999999999998743 2 2578899999999999999998764
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=94.47 E-value=1.1 Score=43.70 Aligned_cols=114 Identities=11% Similarity=0.041 Sum_probs=62.0
Q ss_pred cccchHH---hhhccCcceEEec-cC-chhHHHHHhcCCcEEeccccc--chhh---HHHHHHHh-----------hcee
Q 045281 348 SWAPQVE---VLNHESVGGFVTH-CG-WNSVLEGVCAGVPMLAWPLYA--EQKM---IKAVVVEE-----------MKVG 406 (481)
Q Consensus 348 ~~vpq~~---lL~~~~~~~~vtH-gG-~gs~~eal~~GvP~v~~P~~~--DQ~~---na~~v~~~-----------~G~G 406 (481)
.++|+.+ ++..+++-++-++ .| -.++.||+++|+|+|+.-..+ |.-. |+-.+ +. -++|
T Consensus 196 ~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIHVG 274 (331)
T ss_pred ccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcccc
Confidence 3466544 6888998322233 33 358999999999999986533 2111 11111 00 0234
Q ss_pred eeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 407 LAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 407 ~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
..++. +.+++.+++.+++.|.+.+..+++...-+.... +..+-.+..+++.+.+++
T Consensus 275 ~~v~~--------~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 275 YFLDP--------DIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred cccCC--------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 43333 557788888888887421124433333333322 356666666677666543
No 135
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=94.46 E-value=5 Score=39.22 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=35.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+++-....|++-=...+.++|+++-|+.+|++++..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~ 38 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQ 38 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECc
Confidence 58899999999999999999999999999999999954
No 136
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=94.36 E-value=0.64 Score=38.53 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=62.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
+|++++.....| ...+++.|.++| ++|++++....... .+ ...++++..++.+ . .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g--~~V~ii~~~~~~~~-------~~----~~~~i~~~~~~~~-~----k---- 55 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRG--YDVHIITPRNDYEK-------YE----IIEGIKVIRLPSP-R----K---- 55 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCC--CEEEEEEcCCCchh-------hh----HhCCeEEEEecCC-C----C----
Confidence 367777666666 457799999999 99999997443211 11 1357888877422 1 0
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCch---hHHHHhhccC-CCeEEE
Q 045281 84 VDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSP---AFQVSSSTLS-IPTYYY 141 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~---~~~vA~~~lg-IP~v~~ 141 (481)
.... ... .. .+..++++. +||+|.+...... +..++ +..+ +|++..
T Consensus 56 -~~~~----~~~-~~-~l~k~ik~~----~~DvIh~h~~~~~~~~~~l~~-~~~~~~~~i~~ 105 (139)
T PF13477_consen 56 -SPLN----YIK-YF-RLRKIIKKE----KPDVIHCHTPSPYGLFAMLAK-KLLKNKKVIYT 105 (139)
T ss_pred -ccHH----HHH-HH-HHHHHhccC----CCCEEEEecCChHHHHHHHHH-HHcCCCCEEEE
Confidence 1111 111 12 556666665 9999987765442 33355 8888 888844
No 137
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=94.18 E-value=6.2 Score=38.73 Aligned_cols=39 Identities=13% Similarity=0.115 Sum_probs=36.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
++|+++-....|++.=...+.+.|+++-|+.+|++++..
T Consensus 6 ~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~ 44 (352)
T PRK10422 6 RRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ 44 (352)
T ss_pred ceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEecc
Confidence 589999999999999999999999999999999999954
No 138
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.08 E-value=0.085 Score=44.62 Aligned_cols=97 Identities=14% Similarity=0.097 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHHHHHHHHHHh
Q 045281 18 SMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPALAYELGELN 97 (481)
Q Consensus 18 P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (481)
-+..|+++|.++| |+|+++++....... .. ...++.+..++.+..+ . ....+. .
T Consensus 6 ~~~~l~~~L~~~G--~~V~v~~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~--~-------~~~~~~-----~ 59 (160)
T PF13579_consen 6 YVRELARALAARG--HEVTVVTPQPDPEDD-----EE-----EEDGVRVHRLPLPRRP--W-------PLRLLR-----F 59 (160)
T ss_dssp HHHHHHHHHHHTT---EEEEEEE---GGG------SE-----EETTEEEEEE--S-SS--S-------GGGHCC-----H
T ss_pred HHHHHHHHHHHCC--CEEEEEecCCCCccc-----cc-----ccCCceEEeccCCccc--h-------hhhhHH-----H
Confidence 4678999999999 999999965442211 01 1247888887654221 1 001000 1
Q ss_pred hHHHHHHHHHhhccCCccEEEECCCCc-hhHHHHhh-ccCCCeEEEec
Q 045281 98 NPKLHETLITISKRSNLKAFVIDFFCS-PAFQVSSS-TLSIPTYYYFT 143 (481)
Q Consensus 98 ~~~l~~~l~~~~~~~~pD~vV~D~~~~-~~~~vA~~-~lgIP~v~~~~ 143 (481)
...+..++. .+..+||+|.+..... +...++ + ..++|+|....
T Consensus 60 ~~~~~~~l~--~~~~~~Dvv~~~~~~~~~~~~~~-~~~~~~p~v~~~h 104 (160)
T PF13579_consen 60 LRRLRRLLA--ARRERPDVVHAHSPTAGLVAALA-RRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHHHCH--HCT---SEEEEEHHHHHHHHHHH-HHHHT--EEEE-S
T ss_pred HHHHHHHHh--hhccCCeEEEecccchhHHHHHH-HHccCCcEEEEEC
Confidence 123334431 1235999999876322 233455 5 88999986543
No 139
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=92.92 E-value=1.4 Score=38.08 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=26.2
Q ss_pred cCCccEEEECCCCchhHHHHhhcc-CCCeEEEecc
Q 045281 111 RSNLKAFVIDFFCSPAFQVSSSTL-SIPTYYYFTS 144 (481)
Q Consensus 111 ~~~pD~vV~D~~~~~~~~vA~~~l-gIP~v~~~~~ 144 (481)
...||+||..+-+..++.+- +.+ ++|.+.++-.
T Consensus 64 Gf~PDvI~~H~GWGe~Lflk-dv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLK-DVFPDAPLIGYFEF 97 (171)
T ss_pred CCCCCEEEEcCCcchhhhHH-HhCCCCcEEEEEEE
Confidence 35899999998666677777 888 8999987554
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=92.85 E-value=8.6 Score=36.24 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=35.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+|+++-..+.|++.=...+.++|+++.|+.+|++++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~ 38 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPP 38 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEECh
Confidence 58888999999999999999999999999999999965
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.49 E-value=2.5 Score=43.14 Aligned_cols=103 Identities=13% Similarity=0.103 Sum_probs=68.9
Q ss_pred cccchHH---hhhccCcceEEe---ccCch-hHHHHHhcCCc----EEecccccchhhHHHHHHHhhceeeeeccCcccc
Q 045281 348 SWAPQVE---VLNHESVGGFVT---HCGWN-SVLEGVCAGVP----MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEE 416 (481)
Q Consensus 348 ~~vpq~~---lL~~~~~~~~vt---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
..+++.+ ++..+++ +|. +=|.| ++.|++++|+| +|+--+.+-. ..+ +-|+.++.
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l----~~gllVnP----- 406 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL----NGALLVNP----- 406 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh----CCcEEECC-----
Confidence 4566654 5677888 665 44754 77899999999 6666555432 222 34777877
Q ss_pred cccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 045281 417 RLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFK 473 (481)
Q Consensus 417 ~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 473 (481)
.+.+.+++++.++++.+. ++.+++.+++.+.+. .-+...-++.+++++.
T Consensus 407 --~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 --YDIDGMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLN 455 (456)
T ss_pred --CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhh
Confidence 488999999999998653 235556666666554 2555566777776653
No 142
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.30 E-value=1.4 Score=38.15 Aligned_cols=119 Identities=12% Similarity=0.021 Sum_probs=58.6
Q ss_pred cCCCccCHHHHHHHHHHH-HhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChH
Q 045281 9 TSPGRGHLNSMVELGKLI-LTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLP 87 (481)
Q Consensus 9 ~~~~~GH~~P~l~La~~L-~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 87 (481)
-.++.||+.=|+.|.+.+ .++. +++..+++..+..... .+++ +++.. ....++..++... . ... ...
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~-~~~~~ivt~~d~~S~~-k~~~-~~~~~--~~~~~~~~~~r~r-~--v~q----~~~ 71 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRY-QPRTYIVTEGDKQSRS-KAEQ-LEKSS--SKRHKILEIPRAR-E--VGQ----SYL 71 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcC-CCcEEEEEcCCcccHH-HHHH-HHHhc--cccceeeccceEE-E--ech----hhH
Confidence 348899999999999999 3332 2555556544432221 1111 11110 0111344433210 0 000 111
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCC--CchhHHHHhhcc------CCCeEEEeccc
Q 045281 88 ALAYELGELNNPKLHETLITISKRSNLKAFVIDFF--CSPAFQVSSSTL------SIPTYYYFTSG 145 (481)
Q Consensus 88 ~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~--~~~~~~vA~~~l------gIP~v~~~~~~ 145 (481)
...+..+......+.-+.+ .+||+||+..- +.+...+| +.+ |.+.|.+-+..
T Consensus 72 ~~~~~~l~~~~~~~~il~r-----~rPdvii~nGpg~~vp~~~~~-~l~~~~~~~~~kiIyIES~a 131 (170)
T PF08660_consen 72 TSIFTTLRAFLQSLRILRR-----ERPDVIISNGPGTCVPVCLAA-KLLRLLGLRGSKIIYIESFA 131 (170)
T ss_pred hhHHHHHHHHHHHHHHHHH-----hCCCEEEEcCCceeeHHHHHH-HHHHHhhccCCcEEEEEeee
Confidence 1122222222233333322 28999998873 33344566 889 99999776654
No 143
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.65 E-value=3.6 Score=42.15 Aligned_cols=104 Identities=15% Similarity=0.173 Sum_probs=62.9
Q ss_pred EecccchHH---hhhccCcceEEe---ccCch-hHHHHHhcCCc----EEecccccchhhHHHHHHHhhceeeeeccCcc
Q 045281 346 VESWAPQVE---VLNHESVGGFVT---HCGWN-SVLEGVCAGVP----MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 346 ~~~~vpq~~---lL~~~~~~~~vt---HgG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
+.+++++.+ ++..+++ +|. +-|.| ++.||+++|+| +|+--+.+- . +...-|+.++.
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~-----~---~~~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA-----A---EELSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc-----h---hhcCCCEEECC---
Confidence 346777654 5778888 663 44654 67899999999 544433221 1 11134677777
Q ss_pred cccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 045281 415 EERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESF 472 (481)
Q Consensus 415 ~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 472 (481)
.+.+++++++.++++++. +..+++.++..+.+. .-+...-++.+++.+
T Consensus 412 ----~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 ----YDIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred ----CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 488999999999998763 123333333333333 355556666666544
No 144
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=87.57 E-value=15 Score=37.21 Aligned_cols=138 Identities=13% Similarity=0.176 Sum_probs=85.4
Q ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHhC-CCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEe-cccc-h-
Q 045281 277 RSVLLLCFGSLGSFSCKQLKEMAIGLERS-GVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVE-SWAP-Q- 352 (481)
Q Consensus 277 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~vp-q- 352 (481)
+.++++| +...++.+....+.. +..|-...+. +....| ..+ +++ +|+++. ++.+ .
T Consensus 283 ~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~t----------e~s~kL-~~L-~~y--~nvvly~~~~~~~l 341 (438)
T TIGR02919 283 KQALILT-------NSDQIEHLEEIVQALPDYHFHIAALT----------EMSSKL-MSL-DKY--DNVKLYPNITTQKI 341 (438)
T ss_pred ccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecC----------cccHHH-HHH-Hhc--CCcEEECCcChHHH
Confidence 3477776 255566666666664 3454332221 111111 122 233 566655 5566 3
Q ss_pred HHhhhccCcceEEeccCc--hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHH
Q 045281 353 VEVLNHESVGGFVTHCGW--NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSE 430 (481)
Q Consensus 353 ~~lL~~~~~~~~vtHgG~--gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~ 430 (481)
.+++..|++-+-++||+- .++.||+.+|+|++..=.... +...+ .. |-.+..+ +.+++.++|.+
T Consensus 342 ~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i-~~---g~l~~~~-------~~~~m~~~i~~ 407 (438)
T TIGR02919 342 QELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFI-AS---ENIFEHN-------EVDQLISKLKD 407 (438)
T ss_pred HHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccccc-cC---CceecCC-------CHHHHHHHHHH
Confidence 679999999999999774 799999999999998743221 11222 22 5555553 78999999999
Q ss_pred HhcCchHHHHHHHHHHHHHHH
Q 045281 431 LMDSEKGRAVKERVVEMKEAA 451 (481)
Q Consensus 431 il~~~~~~~~~~~a~~l~~~~ 451 (481)
+|.+++ .++++..+-++.+
T Consensus 408 lL~d~~--~~~~~~~~q~~~a 426 (438)
T TIGR02919 408 LLNDPN--QFRELLEQQREHA 426 (438)
T ss_pred HhcCHH--HHHHHHHHHHHHh
Confidence 999885 2555555555443
No 145
>PRK14099 glycogen synthase; Provisional
Probab=87.13 E-value=15 Score=37.87 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=59.9
Q ss_pred EEecccchH-Hhh-hccCcceEEe---ccCch-hHHHHHhcCCcEEeccccc--chhhHHHHHHHh--hceeeeeccCcc
Q 045281 345 VVESWAPQV-EVL-NHESVGGFVT---HCGWN-SVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEE--MKVGLAVTRSEE 414 (481)
Q Consensus 345 ~~~~~vpq~-~lL-~~~~~~~~vt---HgG~g-s~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~--~G~G~~l~~~~~ 414 (481)
.+.+|-... .++ ..+++ ||. +=|.| +.+||+++|+|.|+.-..+ |--.......+. -+.|..++.
T Consensus 354 ~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~--- 428 (485)
T PRK14099 354 VVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP--- 428 (485)
T ss_pred EEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC---
Confidence 455663332 233 34677 775 34444 6789999997777664422 211111100000 146888877
Q ss_pred cccccCHHHHHHHHHH---HhcCch-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Q 045281 415 EERLVSAAELEQRVSE---LMDSEK-GRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKR 474 (481)
Q Consensus 415 ~~~~~~~~~l~~av~~---il~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 474 (481)
-+++++.+++.+ +++|++ .+++.++++ ...-|-.+.+++.++..++
T Consensus 429 ----~d~~~La~ai~~a~~l~~d~~~~~~l~~~~~----------~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 429 ----VTADALAAALRKTAALFADPVAWRRLQRNGM----------TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred ----CCHHHHHHHHHHHHHHhcCHHHHHHHHHHhh----------hhcCChHHHHHHHHHHHHH
Confidence 388999999987 556655 223333321 1245555555665554443
No 146
>PLN02939 transferase, transferring glycosyl groups
Probab=87.13 E-value=16 Score=40.51 Aligned_cols=83 Identities=6% Similarity=0.059 Sum_probs=54.5
Q ss_pred CCcEEecccchH---HhhhccCcceEEec---cCc-hhHHHHHhcCCcEEeccccc--chhhH--HHHHHHhhceeeeec
Q 045281 342 RGLVVESWAPQV---EVLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYA--EQKMI--KAVVVEEMKVGLAVT 410 (481)
Q Consensus 342 ~~~~~~~~vpq~---~lL~~~~~~~~vtH---gG~-gs~~eal~~GvP~v~~P~~~--DQ~~n--a~~v~~~~G~G~~l~ 410 (481)
+++.+..+.+.. .++..+++ ||.. =|+ .+.+||+++|+|.|+....+ |--.. ...+.+.-+-|..++
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~ 914 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFL 914 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEec
Confidence 467777877764 47888998 7753 233 47899999999999876644 21111 111111225677777
Q ss_pred cCcccccccCHHHHHHHHHHHhc
Q 045281 411 RSEEEERLVSAAELEQRVSELMD 433 (481)
Q Consensus 411 ~~~~~~~~~~~~~l~~av~~il~ 433 (481)
. .+++.+.+++.+++.
T Consensus 915 ~-------~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 915 T-------PDEQGLNSALERAFN 930 (977)
T ss_pred C-------CCHHHHHHHHHHHHH
Confidence 6 478889998888764
No 147
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=87.02 E-value=5.3 Score=34.00 Aligned_cols=102 Identities=8% Similarity=-0.013 Sum_probs=52.4
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHHHH
Q 045281 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPALA 90 (481)
Q Consensus 11 ~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (481)
...|=-.-+..|+++|+++| |+|+++++....... .. ........... ... .....+
T Consensus 10 ~~GG~e~~~~~l~~~l~~~G--~~v~v~~~~~~~~~~--------------~~-~~~~~~~~~~~----~~~--~~~~~~ 66 (177)
T PF13439_consen 10 NIGGAERVVLNLARALAKRG--HEVTVVSPGVKDPIE--------------EE-LVKIFVKIPYP----IRK--RFLRSF 66 (177)
T ss_dssp SSSHHHHHHHHHHHHHHHTT---EEEEEESS-TTS-S--------------ST-EEEE---TT-S----STS--S--HHH
T ss_pred CCChHHHHHHHHHHHHHHCC--CEEEEEEcCCCccch--------------hh-ccceeeeeecc----ccc--ccchhH
Confidence 45666778899999999999 999999865332211 11 11111111011 010 111111
Q ss_pred HHHHHHhhHHHHHHHHHhhccCCccEEEECCCC-chhHHHHhhccCCCeEEEecccH
Q 045281 91 YELGELNNPKLHETLITISKRSNLKAFVIDFFC-SPAFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 91 ~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~-~~~~~vA~~~lgIP~v~~~~~~~ 146 (481)
. ....+...+++. ++|+|-..... .+....+ -. ++|.+.......
T Consensus 67 ~-----~~~~~~~~i~~~----~~DiVh~~~~~~~~~~~~~-~~-~~~~v~~~H~~~ 112 (177)
T PF13439_consen 67 F-----FMRRLRRLIKKE----KPDIVHIHGPPAFWIALLA-CR-KVPIVYTIHGPY 112 (177)
T ss_dssp H-----HHHHHHHHHHHH----T-SEEECCTTHCCCHHHHH-HH-CSCEEEEE-HHH
T ss_pred H-----HHHHHHHHHHHc----CCCeEEecccchhHHHHHh-cc-CCCEEEEeCCCc
Confidence 1 234566677776 99999544423 3333334 33 999997766554
No 148
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=86.94 E-value=31 Score=33.43 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=35.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+++-..+.|++-=...+.+.|++.-|+.+|+|++..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~ 38 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPA 38 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEech
Confidence 58999999999999999999999999899999999954
No 149
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=84.74 E-value=40 Score=32.75 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=36.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
++|+++-....|++.=...+-+.|+++.|+.++++++..
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~ 40 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPK 40 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEecc
Confidence 589999999999999999999999999999999999965
No 150
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=83.49 E-value=46 Score=32.46 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+++-..+.|++.=...+.+.|+++-|+.+|++++..
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~ 39 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPA 39 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEech
Confidence 59999999999999999999999999999999999954
No 151
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.29 E-value=18 Score=32.31 Aligned_cols=160 Identities=11% Similarity=0.117 Sum_probs=85.1
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.++.|+.|.+. ...++.|...|..+.++ ... ....+.+......+.......+...+.
T Consensus 12 ~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------------~~~~l~~l~~~~~i~~~~~~~~~~~l~ 69 (202)
T PRK06718 12 RVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------------LTENLVKLVEEGKIRWKQKEFEPSDIV 69 (202)
T ss_pred EEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------------CCHHHHHHHhCCCEEEEecCCChhhcC
Confidence 47888766555 34455566667665544 321 112222222223344444444455677
Q ss_pred ccCcceEEeccCchhHHHHHh----cCCcEEecccccchhhH-----HHHHHHhhceeeeeccCcccccccCHHHHHHHH
Q 045281 358 HESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMI-----KAVVVEEMKVGLAVTRSEEEERLVSAAELEQRV 428 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~eal~----~GvP~v~~P~~~DQ~~n-----a~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av 428 (481)
.+++ +|.--+.-.+.+.++ .+++.-+ .|.+.. -..+ ++=++-+.+.+++ .++ .-...|++.+
T Consensus 70 ~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaIsT~G-~sP-~la~~lr~~i 140 (202)
T PRK06718 70 DAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISVSTDG-ASP-KLAKKIRDEL 140 (202)
T ss_pred CceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEEECCC-CCh-HHHHHHHHHH
Confidence 7787 888877776666554 4554433 344332 2333 2324555555441 111 2235678888
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 045281 429 SELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 429 ~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (481)
++++ .++.+.+-+.+.++++.+++.+......+..++.++
T Consensus 141 e~~~-~~~~~~~~~~~~~~R~~~k~~~~~~~~R~~~~~~~~ 180 (202)
T PRK06718 141 EALY-DESYESYIDFLYECRQKIKELQIEKREKQILLQEVL 180 (202)
T ss_pred HHHc-chhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 8777 334566888888888888764322222333455554
No 152
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=81.89 E-value=3.3 Score=34.47 Aligned_cols=41 Identities=20% Similarity=0.101 Sum_probs=37.3
Q ss_pred CCc-EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 1 MKD-TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 1 m~~-~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
||+ +|++.+.++-+|..-..-++..|..+| .+|+++....+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G--~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAG--FEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCC--CEEEECCCCCC
Confidence 664 999999999999999999999999999 99999986544
No 153
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.87 E-value=9 Score=36.04 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=51.0
Q ss_pred cccchHHhhhccCcceEEeccCchhHH-HHHhcCCcEEecccccchhh--HHHHHHHhhceeeeeccCcccccccCHHHH
Q 045281 348 SWAPQVEVLNHESVGGFVTHCGWNSVL-EGVCAGVPMLAWPLYAEQKM--IKAVVVEEMKVGLAVTRSEEEERLVSAAEL 424 (481)
Q Consensus 348 ~~vpq~~lL~~~~~~~~vtHgG~gs~~-eal~~GvP~v~~P~~~DQ~~--na~~v~~~~G~G~~l~~~~~~~~~~~~~~l 424 (481)
.|-...++|.++++ .+-- .||.. +++-.|||+|.+|-.+-|+. .|.+=.+-+|+.+.+-.+ .+..-
T Consensus 301 sqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~-------~aq~a 369 (412)
T COG4370 301 SQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRP-------EAQAA 369 (412)
T ss_pred eHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCC-------chhhH
Confidence 44455666666666 3332 24444 46789999999999999874 455554667888888764 23333
Q ss_pred HHHHHHHhcCch
Q 045281 425 EQRVSELMDSEK 436 (481)
Q Consensus 425 ~~av~~il~~~~ 436 (481)
..++.+++.|++
T Consensus 370 ~~~~q~ll~dp~ 381 (412)
T COG4370 370 AQAVQELLGDPQ 381 (412)
T ss_pred HHHHHHHhcChH
Confidence 344455899998
No 154
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=80.71 E-value=22 Score=33.82 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=59.0
Q ss_pred CCcE-Eecccc---hHHhhhccCcceEEec--cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccc
Q 045281 342 RGLV-VESWAP---QVEVLNHESVGGFVTH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415 (481)
Q Consensus 342 ~~~~-~~~~vp---q~~lL~~~~~~~~vtH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
+++. +.+++| +..+|+.|+++.|+|+ =|.||+.-.+..|+|.++- .+=++|.... +. |+=+..+.. .
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqdl~-e~-gv~Vlf~~d--~ 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQDLT-EQ-GLPVLFTGD--D 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHHHH-hC-CCeEEecCC--c
Confidence 3544 335666 6779999999888875 5899999999999999986 4555665544 44 888876666 5
Q ss_pred ccccCHHHHHHHHHHH
Q 045281 416 ERLVSAAELEQRVSEL 431 (481)
Q Consensus 416 ~~~~~~~~l~~av~~i 431 (481)
++...++++=+++
T Consensus 279 ---L~~~~v~e~~rql 291 (322)
T PRK02797 279 ---LDEDIVREAQRQL 291 (322)
T ss_pred ---ccHHHHHHHHHHH
Confidence 8888887774443
No 155
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=80.14 E-value=7.4 Score=40.46 Aligned_cols=81 Identities=17% Similarity=0.131 Sum_probs=49.9
Q ss_pred chHHhhhccCcceEEe---ccCch-hHHHHHhcCCcEEeccccc-chhhHHHHHHHhh-ceeeeeccCcccccccCHHHH
Q 045281 351 PQVEVLNHESVGGFVT---HCGWN-SVLEGVCAGVPMLAWPLYA-EQKMIKAVVVEEM-KVGLAVTRSEEEERLVSAAEL 424 (481)
Q Consensus 351 pq~~lL~~~~~~~~vt---HgG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~~v~~~~-G~G~~l~~~~~~~~~~~~~~l 424 (481)
+..+++..|++ +|. +=|+| +.+||+++|+|+|+....+ ..+.. ..+ ..- ..|+.+.....++-.-+.++|
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v-~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHI-EDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHh-ccCCCceEEEecCCccchHHHHHHH
Confidence 36778888999 555 45654 8899999999999987743 22222 122 220 257777632000001356788
Q ss_pred HHHHHHHhcCc
Q 045281 425 EQRVSELMDSE 435 (481)
Q Consensus 425 ~~av~~il~~~ 435 (481)
++++.++++.+
T Consensus 543 a~~m~~~~~~~ 553 (590)
T cd03793 543 TQYMYEFCQLS 553 (590)
T ss_pred HHHHHHHhCCc
Confidence 88888888554
No 156
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=79.46 E-value=14 Score=35.73 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=31.9
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 3 DTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~-~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
.||+|++. |+-|-+.=-.++|-.|++.| .+|.++++.+-
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCC
Confidence 46777766 89999999999999999999 99777765443
No 157
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=78.33 E-value=6.1 Score=41.01 Aligned_cols=91 Identities=15% Similarity=0.268 Sum_probs=61.9
Q ss_pred CCcEEecccc--h-HHhhhccCcceEEecc---CchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccc
Q 045281 342 RGLVVESWAP--Q-VEVLNHESVGGFVTHC---GWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415 (481)
Q Consensus 342 ~~~~~~~~vp--q-~~lL~~~~~~~~vtHg---G~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
..+.+.++.. + ...+...++ +|.=+ |.+|.+||+.+|+|+| .+.....| +.-.=|..+ +
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li--~--- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII--D--- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe--C---
Confidence 3577778777 3 457777777 77654 7789999999999999 22223333 332235555 2
Q ss_pred ccccCHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHH
Q 045281 416 ERLVSAAELEQRVSELMDSEK-GRAVKERVVEMKEAA 451 (481)
Q Consensus 416 ~~~~~~~~l~~av~~il~~~~-~~~~~~~a~~l~~~~ 451 (481)
+.++|.+++..+|.+.+ ..++...+-+.+...
T Consensus 474 ----d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~y 506 (519)
T TIGR03713 474 ----DISELLKALDYYLDNLKNWNYSLAYSIKLIDDY 506 (519)
T ss_pred ----CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 45899999999999986 555666665555443
No 158
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.70 E-value=62 Score=30.32 Aligned_cols=81 Identities=27% Similarity=0.449 Sum_probs=54.1
Q ss_pred CCcEEecccc---hHHhhhccCcceEEec---cCchh-HHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcc
Q 045281 342 RGLVVESWAP---QVEVLNHESVGGFVTH---CGWNS-VLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEE 414 (481)
Q Consensus 342 ~~~~~~~~vp---q~~lL~~~~~~~~vtH---gG~gs-~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~ 414 (481)
.++.+.++++ ...++..+++ ++.. .|.|. +.|++++|+|+|.... ......+ ..-+.|. +...
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~----~~~~e~~-~~~~~g~-~~~~-- 326 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDV----GGIPEVV-EDGETGL-LVPP-- 326 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCC----CChHHHh-cCCCceE-ecCC--
Confidence 5677788888 3446666777 6666 35544 5999999999976644 3333333 3312466 4442
Q ss_pred cccccCHHHHHHHHHHHhcCch
Q 045281 415 EERLVSAAELEQRVSELMDSEK 436 (481)
Q Consensus 415 ~~~~~~~~~l~~av~~il~~~~ 436 (481)
.+.+.+.+++..++++.+
T Consensus 327 ----~~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 327 ----GDVEELADALEQLLEDPE 344 (381)
T ss_pred ----CCHHHHHHHHHHHhcCHH
Confidence 368999999999998874
No 159
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=76.78 E-value=48 Score=32.15 Aligned_cols=82 Identities=12% Similarity=0.186 Sum_probs=62.4
Q ss_pred CCcE-Eecccc---hHHhhhccCcceEEec--cCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCccc
Q 045281 342 RGLV-VESWAP---QVEVLNHESVGGFVTH--CGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEE 415 (481)
Q Consensus 342 ~~~~-~~~~vp---q~~lL~~~~~~~~vtH--gG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~ 415 (481)
+++. +.+++| +..+|..|+++.|.|. =|.|++.-.|..|+|.+.- .+-+++ .-+.++ |+=+....+ +
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~---~~np~~-~~l~~~-~ipVlf~~d--~ 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS---RDNPFW-QDLKEQ-GIPVLFYGD--E 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe---cCChHH-HHHHhC-CCeEEeccc--c
Confidence 4664 346777 5679999999777764 6899999999999999876 555555 444344 887776655 5
Q ss_pred ccccCHHHHHHHHHHHhc
Q 045281 416 ERLVSAAELEQRVSELMD 433 (481)
Q Consensus 416 ~~~~~~~~l~~av~~il~ 433 (481)
++...|+++=+.+..
T Consensus 318 ---L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 ---LDEALVREAQRQLAN 332 (360)
T ss_pred ---CCHHHHHHHHHHHhh
Confidence 999999999887764
No 160
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=75.64 E-value=12 Score=41.14 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=62.1
Q ss_pred HHhhhccCcceEEec---cCch-hHHHHHhcCCc---EEecc-cccchhhHHHHHHHhhc-eeeeeccCcccccccCHHH
Q 045281 353 VEVLNHESVGGFVTH---CGWN-SVLEGVCAGVP---MLAWP-LYAEQKMIKAVVVEEMK-VGLAVTRSEEEERLVSAAE 423 (481)
Q Consensus 353 ~~lL~~~~~~~~vtH---gG~g-s~~eal~~GvP---~v~~P-~~~DQ~~na~~v~~~~G-~G~~l~~~~~~~~~~~~~~ 423 (481)
.+++..+++ ||.- -|.| +..|++++|+| .+++. +.+ .+. .+| -|+.+++ .+.+.
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~----~l~~~allVnP-------~D~~~ 432 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ----SLGAGALLVNP-------WNITE 432 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh----hhcCCeEEECC-------CCHHH
Confidence 356777888 6644 4876 66799999999 34443 433 212 134 5788888 58899
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 424 LEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 424 l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
+++++.++|..+. ++-+++.+++.+.+++ -+...-.+.|++.+.+.
T Consensus 433 lA~AI~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 433 VSSAIKEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHHHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 9999999998332 1234455555555542 33445555665555444
No 161
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=74.28 E-value=14 Score=31.62 Aligned_cols=39 Identities=15% Similarity=0.295 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|.++|++.-.|+.|-..-++.++..|.+.| ++|-=+-++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~ 42 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITP 42 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEee
Confidence 456899999999999999999999999999 888654433
No 162
>PRK06321 replicative DNA helicase; Provisional
Probab=73.07 E-value=14 Score=37.82 Aligned_cols=124 Identities=10% Similarity=0.125 Sum_probs=71.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
+++..-|+.|-+.-.+.+|...+ +.| ..|.|++-+.... +.+.++.+...++....+....+. .
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g--~~v~~fSLEMs~~------ql~~Rlla~~s~v~~~~i~~~~l~-------~ 293 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNR--LPVGIFSLEMTVD------QLIHRIICSRSEVESKKISVGDLS-------G 293 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCHH------HHHHHHHHhhcCCCHHHhhcCCCC-------H
Confidence 56777799999999999999987 458 8999998665432 235554433334443333221111 0
Q ss_pred CChHHHHHHHHHH--------------hhHHHHHHHHHhhccCCccEEEECCCCchh---------------------H-
Q 045281 84 VDLPALAYELGEL--------------NNPKLHETLITISKRSNLKAFVIDFFCSPA---------------------F- 127 (481)
Q Consensus 84 ~~~~~~~~~~~~~--------------~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~---------------------~- 127 (481)
.-...+...... ....++..++++....+.|+||.|.+.... +
T Consensus 294 -~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK 372 (472)
T PRK06321 294 -RDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLK 372 (472)
T ss_pred -HHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHH
Confidence 001111111110 123455555554444579999999943211 1
Q ss_pred HHHhhccCCCeEEEeccc
Q 045281 128 QVSSSTLSIPTYYYFTSG 145 (481)
Q Consensus 128 ~vA~~~lgIP~v~~~~~~ 145 (481)
.+| +.++||++.++...
T Consensus 373 ~lA-kel~vpVi~lsQLn 389 (472)
T PRK06321 373 NLA-RELNIPILCLSQLS 389 (472)
T ss_pred HHH-HHhCCcEEEEeecC
Confidence 256 78999999775543
No 163
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=72.63 E-value=40 Score=30.16 Aligned_cols=148 Identities=14% Similarity=0.169 Sum_probs=79.0
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.++.|+.|... ..-++.|-..|..+.++-... .+++.+-....++.+..--.+...|.
T Consensus 11 ~vlVvGgG~va-------~rk~~~Ll~~ga~VtVvsp~~---------------~~~l~~l~~~~~i~~~~~~~~~~dl~ 68 (205)
T TIGR01470 11 AVLVVGGGDVA-------LRKARLLLKAGAQLRVIAEEL---------------ESELTLLAEQGGITWLARCFDADILE 68 (205)
T ss_pred eEEEECcCHHH-------HHHHHHHHHCCCEEEEEcCCC---------------CHHHHHHHHcCCEEEEeCCCCHHHhC
Confidence 37777766554 233455556777765543321 12232222223454432222344567
Q ss_pred ccCcceEEeccCchhHHH-----HHhcCCcEEec--ccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHH
Q 045281 358 HESVGGFVTHCGWNSVLE-----GVCAGVPMLAW--PLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSE 430 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~e-----al~~GvP~v~~--P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~ 430 (481)
.+++ +|..-|...+.+ |-..|+|+-++ |-..| +..-..+ ++=++-+.+.+++ .++ .-...|++.+++
T Consensus 69 ~~~l--Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~-~~g~l~iaisT~G-~sP-~la~~lr~~ie~ 142 (205)
T TIGR01470 69 GAFL--VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIV-DRSPVVVAISSGG-AAP-VLARLLRERIET 142 (205)
T ss_pred CcEE--EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEE-EcCCEEEEEECCC-CCc-HHHHHHHHHHHH
Confidence 7777 888888764443 44567887433 22222 3333334 3313455555441 111 233578888888
Q ss_pred HhcCchHHHHHHHHHHHHHHHHHH
Q 045281 431 LMDSEKGRAVKERVVEMKEAAAAA 454 (481)
Q Consensus 431 il~~~~~~~~~~~a~~l~~~~~~~ 454 (481)
++... ...+-+.+.++++.+++.
T Consensus 143 ~l~~~-~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 143 LLPPS-LGDLATLAATWRDAVKKR 165 (205)
T ss_pred hcchh-HHHHHHHHHHHHHHHHhh
Confidence 87543 455778888888888764
No 164
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=71.07 E-value=6.2 Score=36.10 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=37.5
Q ss_pred CCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhcc
Q 045281 10 SPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVS 58 (481)
Q Consensus 10 ~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~ 58 (481)
=|+-|.+.=-..||-.|+.-+ +.|.++++.+.++.+-.|.+.....+
T Consensus 27 KGGVGKTTcs~sLAvqla~~r--~~vLiISTDPAHNlSDAF~qkftk~p 73 (323)
T KOG2825|consen 27 KGGVGKTTCSCSLAVQLAKVR--ESVLIISTDPAHNLSDAFSQKFTKTP 73 (323)
T ss_pred cCCcCccchhhHHHHHHhccC--CceEEeecCcccchHHHHHHHhcCCC
Confidence 378888899999999999999 99999998777776545666555543
No 165
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=70.91 E-value=22 Score=33.32 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=33.7
Q ss_pred cEEecccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccc
Q 045281 344 LVVESWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 344 ~~~~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~ 388 (481)
+++.+-++-.+||.+++. +||-. .++-.||+.+|+|++++..
T Consensus 185 ~~~~~~~~~~~Ll~~s~~--Vvtin-StvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 185 VIIDDDVNLYELLEQSDA--VVTIN-STVGLEALLHGKPVIVFGR 226 (269)
T ss_pred EEECCCCCHHHHHHhCCE--EEEEC-CHHHHHHHHcCCceEEecC
Confidence 444567788899999998 88874 4577899999999999854
No 166
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=70.83 E-value=7.3 Score=31.31 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=32.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||++.+.++-.|...+.-++..|.++| ++|.+....
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G--~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAG--FEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCC--CEEEECCCC
Confidence 589999999999999999999999999 999887644
No 167
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=69.53 E-value=73 Score=31.42 Aligned_cols=114 Identities=21% Similarity=0.255 Sum_probs=64.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhc
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNH 358 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~ 358 (481)
-|+-+.||+. .+|++.++..+..++..++++. |=.|....++ ..-| |
T Consensus 196 ~I~aGqgTig-------~EIl~ql~~~~~AI~vpVGGGG-------------LiaGIat~vk-------~~~p------~ 242 (457)
T KOG1250|consen 196 DIWAGQGTIG-------LEILEQLKEPDGAIVVPVGGGG-------------LIAGIATGVK-------RVGP------H 242 (457)
T ss_pred hhhcCcchHH-------HHHHHhhcCCCCeEEEecCCch-------------hHHHHHHHHH-------HhCC------C
Confidence 5556667765 5677777776556667776641 1122211111 1112 5
Q ss_pred cCcceEEeccCchhHHHHHhcCCcEEeccc---ccch------hhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHH
Q 045281 359 ESVGGFVTHCGWNSVLEGVCAGVPMLAWPL---YAEQ------KMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVS 429 (481)
Q Consensus 359 ~~~~~~vtHgG~gs~~eal~~GvP~v~~P~---~~DQ------~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~ 429 (481)
..+-++-|+ |+.++..||.+|.|+- +|. ++|- -.|+-+++..+--.+. .++.++|..+|.
T Consensus 243 vkIIGVEt~-~a~~f~~sl~~g~~V~-lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv---------vV~~~ei~aaI~ 311 (457)
T KOG1250|consen 243 VKIIGVETE-GAHSFNASLKAGKPVT-LPKITSLADGLAVKTVGENTFELAQKLVDRVV---------VVEDDEIAAAIL 311 (457)
T ss_pred CceEEEeec-CcHHHHHHHhcCCeee-cccccchhcccccchhhHHHHHHHHhcCceEE---------EeccHHHHHHHH
Confidence 555556776 6889999999999863 332 2232 1233333322111222 256689999999
Q ss_pred HHhcCch
Q 045281 430 ELMDSEK 436 (481)
Q Consensus 430 ~il~~~~ 436 (481)
+++.|++
T Consensus 312 ~l~edek 318 (457)
T KOG1250|consen 312 RLFEDEK 318 (457)
T ss_pred HHHHhhh
Confidence 9998876
No 168
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=68.87 E-value=22 Score=38.78 Aligned_cols=111 Identities=13% Similarity=0.075 Sum_probs=65.4
Q ss_pred EecccchHH---hhhccCcceEEec---cCc-hhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccc
Q 045281 346 VESWAPQVE---VLNHESVGGFVTH---CGW-NSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERL 418 (481)
Q Consensus 346 ~~~~vpq~~---lL~~~~~~~~vtH---gG~-gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~ 418 (481)
+.+++++.+ ++..+++ |+.- -|. .++.|++++|+|-...|+..+----+..+ .-|+.++.
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l----~~~llv~P------- 412 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL----AEALLVNP------- 412 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHHh----CcCeEECC-------
Confidence 446777654 6667787 6653 355 47789999987632223322211112222 23788887
Q ss_pred cCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 419 VSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 419 ~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
.+.+.+++++.+++..+.. +.+++.+++.+.++ .-+...-++.+++.+.+.
T Consensus 413 ~d~~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 413 NDIEGIAAAIKRALEMPEE-EQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred CCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 4889999999999986531 13444444444443 245556666666665554
No 169
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=68.51 E-value=30 Score=33.57 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=31.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
|.-++.|++|-+-=.+.|++.|.++| ++|.+++-...
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G--~~~~IlSRGYg 76 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARG--YRPAILSRGYG 76 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcC--CceEEEcCCCC
Confidence 44467899999999999999999999 99999985433
No 170
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=68.04 E-value=20 Score=36.37 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=26.0
Q ss_pred HHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEE
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYY 141 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~ 141 (481)
.+.+.+++. +||++|.... +..+| +++|||++.+
T Consensus 368 e~~~~i~~~----~pDliiG~s~---~~~~a-~~~gip~v~~ 401 (435)
T cd01974 368 HLRSLLFTE----PVDLLIGNTY---GKYIA-RDTDIPLVRF 401 (435)
T ss_pred HHHHHHhhc----CCCEEEECcc---HHHHH-HHhCCCEEEe
Confidence 444555665 8999999864 56788 9999999855
No 171
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=67.98 E-value=18 Score=30.17 Aligned_cols=66 Identities=12% Similarity=0.139 Sum_probs=52.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSG 75 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~ 75 (481)
.+|+|++.-+.+|++-.+.+.+.+++..|+|.+.+..-.- -...+..+....+++++...+....|
T Consensus 60 ~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL-------~~~~i~~L~~~~~n~evr~Fn~s~YP 125 (142)
T PF07801_consen 60 SDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGL-------SEEQIKKLKKNFCNVEVRKFNFSKYP 125 (142)
T ss_pred CccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCC-------CHHHHHHHHhcCCceEEEECCCccCc
Confidence 4899999999999999999999999999999999987331 12244454444578999998877666
No 172
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=67.72 E-value=11 Score=33.20 Aligned_cols=96 Identities=16% Similarity=0.081 Sum_probs=45.7
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHHHH
Q 045281 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPALA 90 (481)
Q Consensus 11 ~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (481)
.+.|-++-...|+++|.++.|++.|.+.+++.... ....+.. .+.+...-+|.+ . .
T Consensus 29 ~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~------~~~~~~~--~~~v~~~~~P~D-~------------~--- 84 (186)
T PF04413_consen 29 ASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGR------EMARKLL--PDRVDVQYLPLD-F------------P--- 84 (186)
T ss_dssp SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHH------HHHHGG---GGG-SEEE---S-S------------H---
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchH------HHHHHhC--CCCeEEEEeCcc-C------------H---
Confidence 67799999999999999997779999888643211 1122111 012332223321 1 1
Q ss_pred HHHHHHhhHHHHHHHHHhhccCCccEEEECCC-CchhH-HHHhhccCCCeEEEec
Q 045281 91 YELGELNNPKLHETLITISKRSNLKAFVIDFF-CSPAF-QVSSSTLSIPTYYYFT 143 (481)
Q Consensus 91 ~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~-~~~~~-~vA~~~lgIP~v~~~~ 143 (481)
...+.+++.+ +||++|.-.. .++.. ..| ++.|||.+.+..
T Consensus 85 --------~~~~rfl~~~----~P~~~i~~EtElWPnll~~a-~~~~ip~~LvNa 126 (186)
T PF04413_consen 85 --------WAVRRFLDHW----RPDLLIWVETELWPNLLREA-KRRGIPVVLVNA 126 (186)
T ss_dssp --------HHHHHHHHHH------SEEEEES----HHHHHH------S-EEEEEE
T ss_pred --------HHHHHHHHHh----CCCEEEEEccccCHHHHHHH-hhcCCCEEEEee
Confidence 1345667777 8998774442 33344 456 999999997754
No 173
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=67.63 E-value=79 Score=27.08 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCcEEecccch-HH-hh------hccCcceEEe
Q 045281 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAPQ-VE-VL------NHESVGGFVT 366 (481)
Q Consensus 296 ~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vpq-~~-lL------~~~~~~~~vt 366 (481)
+.+++.|++.|.+.|+-+.+... ..+.+.+. ..++.++..... .. .+ .....+++++
T Consensus 4 ~~l~~~L~~~Gv~~vFgipG~~~--------------~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~ 69 (164)
T cd07039 4 DVIVETLENWGVKRVYGIPGDSI--------------NGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLG 69 (164)
T ss_pred HHHHHHHHHCCCCEEEEcCCCch--------------HHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45788888888888887766410 12222221 123333222111 00 00 1123445899
Q ss_pred ccCch------hHHHHHhcCCcEEecc
Q 045281 367 HCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 367 HgG~g------s~~eal~~GvP~v~~P 387 (481)
|.|-| .+.+|...++|+|++.
T Consensus 70 t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 70 SSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 98866 6679999999999995
No 174
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=67.19 E-value=14 Score=37.41 Aligned_cols=123 Identities=11% Similarity=0.104 Sum_probs=70.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
+++..-|+.|-+.-.+.+|..++ +.| +.|.|++.+.... ..+.++.+...++....+..+.+. .
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~~~g--~~v~~fSlEm~~~------~l~~Rl~~~~~~v~~~~~~~~~l~-------~ 261 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREG--KPVLFFSLEMSAE------QLGERLLASKSGINTGNIRTGRFN-------D 261 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CcEEEEECCCCHH------HHHHHHHHHHcCCCHHHHhcCCCC-------H
Confidence 56677799999999999999887 678 9999998764432 234444333345544433221111 0
Q ss_pred CChHHHHHHHHH--------------HhhHHHHHHHHHhhccC-CccEEEECCCCchh------------------HHHH
Q 045281 84 VDLPALAYELGE--------------LNNPKLHETLITISKRS-NLKAFVIDFFCSPA------------------FQVS 130 (481)
Q Consensus 84 ~~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~-~pD~vV~D~~~~~~------------------~~vA 130 (481)
.+ ...+..... .....++..++++.... ++|+||.|.+.... -.+|
T Consensus 262 ~~-~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lA 340 (421)
T TIGR03600 262 SD-FNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALA 340 (421)
T ss_pred HH-HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00 111111111 12334455555443333 69999999952211 1267
Q ss_pred hhccCCCeEEEecc
Q 045281 131 SSTLSIPTYYYFTS 144 (481)
Q Consensus 131 ~~~lgIP~v~~~~~ 144 (481)
+.++||++.++..
T Consensus 341 -ke~~i~Vi~lsQl 353 (421)
T TIGR03600 341 -KELDVPVVLLAQL 353 (421)
T ss_pred -HHhCCcEEEeccc
Confidence 8899999977543
No 175
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=67.07 E-value=34 Score=31.67 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|+++|+++..-+-| ..||+.|.++| ..|...+.+
T Consensus 1 ~~~~IlvlgGT~eg-----r~la~~L~~~g--~~v~~Svat 34 (248)
T PRK08057 1 MMPRILLLGGTSEA-----RALARALAAAG--VDIVLSLAG 34 (248)
T ss_pred CCceEEEEechHHH-----HHHHHHHHhCC--CeEEEEEcc
Confidence 56678887644443 57899999999 888877644
No 176
>PRK05595 replicative DNA helicase; Provisional
Probab=67.04 E-value=2.7 Score=42.84 Aligned_cols=123 Identities=9% Similarity=0.056 Sum_probs=69.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
+++..-|+.|-+.-.+.+|..++ +.| ..|.|++.+.... +...++.+...++....+....+. .
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g--~~vl~fSlEms~~------~l~~R~~a~~~~v~~~~~~~~~l~--~----- 268 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREG--KSVAIFSLEMSKE------QLAYKLLCSEANVDMLRLRTGNLE--D----- 268 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcC--CcEEEEecCCCHH------HHHHHHHHHhcCCCHHHHhcCCCC--H-----
Confidence 56677799999999999999876 569 9999998664322 234444333345544443221111 0
Q ss_pred CChHHHHHHHHH--------------HhhHHHHHHHHHhhccCCccEEEECCCCchh-------------------HHHH
Q 045281 84 VDLPALAYELGE--------------LNNPKLHETLITISKRSNLKAFVIDFFCSPA-------------------FQVS 130 (481)
Q Consensus 84 ~~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~-------------------~~vA 130 (481)
.-...+..... .....++..++++....++|+||.|.+-.-. -.+|
T Consensus 269 -~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lA 347 (444)
T PRK05595 269 -KDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALA 347 (444)
T ss_pred -HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHH
Confidence 00111111111 1123455555555434589999999832110 1246
Q ss_pred hhccCCCeEEEecc
Q 045281 131 SSTLSIPTYYYFTS 144 (481)
Q Consensus 131 ~~~lgIP~v~~~~~ 144 (481)
+.++||++.++..
T Consensus 348 -ke~~i~vi~lsQL 360 (444)
T PRK05595 348 -KEMECPVIALSQL 360 (444)
T ss_pred -HHhCCeEEEeecc
Confidence 8899999877543
No 177
>PRK09165 replicative DNA helicase; Provisional
Probab=66.59 E-value=18 Score=37.44 Aligned_cols=123 Identities=10% Similarity=0.088 Sum_probs=70.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTY---------------HPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~---------------G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
+++..-|+.|-+.-.+.+|...+.+ | ..|.|++.+.... +.+.++.+...++....+
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g--~~vl~fSlEMs~~------ql~~R~la~~s~v~~~~i 291 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNG--GVVGFFSLEMSAE------QLATRILSEQSEISSSKI 291 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCC--CeEEEEeCcCCHH------HHHHHHHHHhcCCCHHHH
Confidence 5667779999999999999988754 7 8899998664432 234444333345544333
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHH--------------HhhHHHHHHHHHhhccCCccEEEECCCCch---h------
Q 045281 70 PPPVSGLLDTLRSPVDLPALAYELGE--------------LNNPKLHETLITISKRSNLKAFVIDFFCSP---A------ 126 (481)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~---~------ 126 (481)
..+.+. . +-...+..... .....++..++++.+..++|+||.|.+..- .
T Consensus 292 ~~~~l~-------~-~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~~~~~~~~~ 363 (497)
T PRK09165 292 RRGKIS-------E-EDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRGSSKRSSDN 363 (497)
T ss_pred hcCCCC-------H-HHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccCCCCCCCCc
Confidence 222111 0 00111111111 113345555555544458999999994211 0
Q ss_pred ------------HHHHhhccCCCeEEEecc
Q 045281 127 ------------FQVSSSTLSIPTYYYFTS 144 (481)
Q Consensus 127 ------------~~vA~~~lgIP~v~~~~~ 144 (481)
-.+| +.++||++.++..
T Consensus 364 r~~ev~~is~~LK~lA-kel~ipVi~lsQL 392 (497)
T PRK09165 364 RVQEISEITQGLKALA-KELNIPVIALSQL 392 (497)
T ss_pred hHHHHHHHHHHHHHHH-HHhCCeEEEeecc
Confidence 1256 8899999977553
No 178
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=66.40 E-value=11 Score=37.09 Aligned_cols=116 Identities=10% Similarity=0.161 Sum_probs=64.9
Q ss_pred CCcEEe-cccchHHhhhccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccC
Q 045281 342 RGLVVE-SWAPQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVS 420 (481)
Q Consensus 342 ~~~~~~-~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~ 420 (481)
.+++.. +..+..++|..+++ +||-- .+.+.|.+..++|+|....-.|.+... + |.-......--..-.-+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCC
Confidence 455554 44567899999999 99986 567889999999999888777766331 1 33222211000001246
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 045281 421 AAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLV 469 (481)
Q Consensus 421 ~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~ 469 (481)
.++|.++|..++.+.. .++++.++..+..-. -++|.++++.++.++
T Consensus 323 ~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENPD--EYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHHH--HTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 6899999999887654 245556666666543 234555555555443
No 179
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=66.06 E-value=59 Score=33.28 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=52.2
Q ss_pred hHHHHHhcCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Q 045281 372 SVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAA 451 (481)
Q Consensus 372 s~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~ 451 (481)
++.||+++|+|+|+. ++--=+..+ +..--|..+++. + -....+++++.++..|++ ++.+..+=+.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~dp~--~---e~~~~~a~~~~kl~~~p~---l~~~~~~~G~~- 446 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLIDPG--Q---EAVAELADALLKLRRDPE---LWARMGKNGLK- 446 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceeeCCc--h---HHHHHHHHHHHHHhcCHH---HHHHHHHHHHH-
Confidence 788999999999987 222233333 342347777765 3 345589999999999998 43333222211
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 452 AAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 452 ~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
-+++-.+-+...+.|.+.+.+.
T Consensus 447 --rV~e~fs~~~~~~ri~~~~~~~ 468 (495)
T KOG0853|consen 447 --RVKEMFSWQHYSERIASVLGKY 468 (495)
T ss_pred --HHHHHHhHHHHHHHHHHHhHhc
Confidence 1122233345555666655544
No 180
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=65.88 E-value=51 Score=30.70 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=23.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+|+++ +++|. -..|++.|.++| |+|+..+.+.
T Consensus 2 ~ILvl--GGT~e---gr~la~~L~~~g--~~v~~s~~t~ 33 (256)
T TIGR00715 2 TVLLM--GGTVD---SRAIAKGLIAQG--IEILVTVTTS 33 (256)
T ss_pred eEEEE--echHH---HHHHHHHHHhCC--CeEEEEEccC
Confidence 45554 34443 778999999999 9999887553
No 181
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=65.85 E-value=51 Score=33.77 Aligned_cols=38 Identities=13% Similarity=0.329 Sum_probs=28.6
Q ss_pred EEEEEcC---C---CccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 4 TIVLYTS---P---GRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~---~---~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
||+++++ | +.|=-.=.-.|+++|+++| |+|.++++...
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G--~~v~v~~p~y~ 45 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALG--HDVRVLLPAYG 45 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcC--CeEEEEecCCc
Confidence 5888775 2 3344445678999999999 99999997543
No 182
>PRK08760 replicative DNA helicase; Provisional
Probab=65.43 E-value=12 Score=38.32 Aligned_cols=131 Identities=10% Similarity=0.100 Sum_probs=70.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRS 82 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~-~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (481)
=+++..-|+.|-+.-.+.+|...+. .| ..|.|++.+.... +.+.++.+...++....+..+.+.. +++..
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g--~~V~~fSlEMs~~------ql~~Rl~a~~s~i~~~~i~~g~l~~-~e~~~ 301 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSK--KGVAVFSMEMSAS------QLAMRLISSNGRINAQRLRTGALED-EDWAR 301 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcC--CceEEEeccCCHH------HHHHHHHHhhCCCcHHHHhcCCCCH-HHHHH
Confidence 3567777999999999999998874 58 8999998664422 2344544333444443332221110 00000
Q ss_pred CCChHHHHHH-------HHHHhhHHHHHHHHHhhccCCccEEEECCCCch-------------hH------HHHhhccCC
Q 045281 83 PVDLPALAYE-------LGELNNPKLHETLITISKRSNLKAFVIDFFCSP-------------AF------QVSSSTLSI 136 (481)
Q Consensus 83 ~~~~~~~~~~-------~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~-------------~~------~vA~~~lgI 136 (481)
.......+.. .-......++..++++.+..++|+||.|.+... +. .+| +.++|
T Consensus 302 ~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lA-kel~i 380 (476)
T PRK08760 302 VTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLA-KELNV 380 (476)
T ss_pred HHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHH-HHhCC
Confidence 0000000000 000012344444555444457999999973211 00 167 88999
Q ss_pred CeEEEecc
Q 045281 137 PTYYYFTS 144 (481)
Q Consensus 137 P~v~~~~~ 144 (481)
|++.++..
T Consensus 381 pVi~lsQL 388 (476)
T PRK08760 381 PVIALSQL 388 (476)
T ss_pred EEEEeecc
Confidence 99977543
No 183
>PRK08506 replicative DNA helicase; Provisional
Probab=64.58 E-value=22 Score=36.52 Aligned_cols=123 Identities=14% Similarity=0.173 Sum_probs=72.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPV 84 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 84 (481)
+++..-|+.|-+.-.+.+|...++.| +.|.|++.+.... +.+.++.+...++.+..+....+. .
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g--~~V~~fSlEMs~~------ql~~Rlla~~s~v~~~~i~~~~l~--~------ 258 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQD--KGVAFFSLEMPAE------QLMLRMLSAKTSIPLQNLRTGDLD--D------ 258 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcC--CcEEEEeCcCCHH------HHHHHHHHHhcCCCHHHHhcCCCC--H------
Confidence 56777799999999999999998899 9999998765433 234444333345554443222111 0
Q ss_pred ChHHHHHHHHH--------------HhhHHHHHHHHHhhcc-CCccEEEECCCCch---h---------------H-HHH
Q 045281 85 DLPALAYELGE--------------LNNPKLHETLITISKR-SNLKAFVIDFFCSP---A---------------F-QVS 130 (481)
Q Consensus 85 ~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~-~~pD~vV~D~~~~~---~---------------~-~vA 130 (481)
.-...+..... .....++..++++.+. .+.++||.|.+-.- . + .+|
T Consensus 259 ~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lA 338 (472)
T PRK08506 259 DEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLA 338 (472)
T ss_pred HHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 00011111111 1233455555554432 35899999994211 1 1 257
Q ss_pred hhccCCCeEEEecc
Q 045281 131 SSTLSIPTYYYFTS 144 (481)
Q Consensus 131 ~~~lgIP~v~~~~~ 144 (481)
+.++||++.++..
T Consensus 339 -kel~ipVi~lsQL 351 (472)
T PRK08506 339 -RELDIPIIALSQL 351 (472)
T ss_pred -HHhCCcEEEEeec
Confidence 8999999977643
No 184
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=64.44 E-value=70 Score=27.32 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=21.3
Q ss_pred cceEEeccCch------hHHHHHhcCCcEEecc
Q 045281 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~vtHgG~g------s~~eal~~GvP~v~~P 387 (481)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 44588887765 5568999999999995
No 185
>PRK05748 replicative DNA helicase; Provisional
Probab=64.06 E-value=4.6 Score=41.16 Aligned_cols=38 Identities=11% Similarity=0.158 Sum_probs=31.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~ 43 (481)
=+++..-|+.|-+.-.+.+|...+ ++| ..|.|++.+..
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g--~~v~~fSlEms 243 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTD--KNVAIFSLEMG 243 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCC--CeEEEEeCCCC
Confidence 367777899999999999999987 468 99999986654
No 186
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=63.17 E-value=47 Score=31.94 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=32.0
Q ss_pred chHHhhhccCcceEEeccCchhHHHHHhcCCcEEeccccc
Q 045281 351 PQVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (481)
Q Consensus 351 pq~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~ 390 (481)
|+.++|..++. ++||--=.+-+.||+..|+|+.++|.-.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG 259 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC
Confidence 67889998887 4555555588889999999999999876
No 187
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=63.11 E-value=30 Score=32.12 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+++..-|+.|...-...||..+++.| ++|.++....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g--~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQG--KKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCC--CCceEEeCCC
Confidence 45555689999999999999999999 9999998653
No 188
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=63.08 E-value=22 Score=32.62 Aligned_cols=98 Identities=9% Similarity=0.173 Sum_probs=52.5
Q ss_pred CcEEEEecCCCC---CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecc--cc
Q 045281 277 RSVLLLCFGSLG---SFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESW--AP 351 (481)
Q Consensus 277 ~~~v~vs~GS~~---~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--vp 351 (481)
++.|.|..|+.. ..+.+.+.++++.|.+.+..++. +++.. +.....-..+.+......+.+.+- +.
T Consensus 105 ~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl-~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 175 (247)
T PF01075_consen 105 KPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVL-LGGPE--------EQEKEIADQIAAGLQNPVINLAGKTSLR 175 (247)
T ss_dssp SSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE---SSH--------HHHHHHHHHHHTTHTTTTEEETTTS-HH
T ss_pred CCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEE-Eccch--------HHHHHHHHHHHHhcccceEeecCCCCHH
Confidence 347777777765 55788899999999887756544 34320 000000011111111112223222 22
Q ss_pred -hHHhhhccCcceEEeccCchhHHHHHhcCCcEEec
Q 045281 352 -QVEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 352 -q~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~ 386 (481)
...++.++++ +|+. -.|.++-|.+.|+|+|++
T Consensus 176 e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 176 ELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 3568889998 9987 568899999999999998
No 189
>PRK05636 replicative DNA helicase; Provisional
Probab=62.32 E-value=14 Score=38.31 Aligned_cols=123 Identities=11% Similarity=0.095 Sum_probs=69.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
|++..-|+.|-+.-.+.+|...+ +.| ..|.|++.+.... +.+.++.+...++....+....+. .
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g--~~v~~fSlEMs~~------ql~~R~ls~~s~v~~~~i~~g~l~--~----- 332 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHN--KASVIFSLEMSKS------EIVMRLLSAEAEVRLSDMRGGKMD--E----- 332 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEeeCCHH------HHHHHHHHHhcCCCHHHHhcCCCC--H-----
Confidence 56777899999999999999876 468 8899988654322 234444333334443333222111 0
Q ss_pred CChHHHHHHHHHH--------------hhHHHHHHHHHhhccCCccEEEECCCCch--h-----------------HHHH
Q 045281 84 VDLPALAYELGEL--------------NNPKLHETLITISKRSNLKAFVIDFFCSP--A-----------------FQVS 130 (481)
Q Consensus 84 ~~~~~~~~~~~~~--------------~~~~l~~~l~~~~~~~~pD~vV~D~~~~~--~-----------------~~vA 130 (481)
+-...+...... ....++..++++....+.|+||.|.+-.- + -.+|
T Consensus 333 -~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lA 411 (505)
T PRK05636 333 -DAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLA 411 (505)
T ss_pred -HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 001111111110 12344555555444458999999993221 1 0277
Q ss_pred hhccCCCeEEEecc
Q 045281 131 SSTLSIPTYYYFTS 144 (481)
Q Consensus 131 ~~~lgIP~v~~~~~ 144 (481)
+.++||++.++..
T Consensus 412 -kel~ipVi~lsQL 424 (505)
T PRK05636 412 -KELDVPLIAISQL 424 (505)
T ss_pred -HHhCCeEEEEeec
Confidence 9999999987643
No 190
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=61.21 E-value=1e+02 Score=26.08 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=71.9
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhc
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNH 358 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~ 358 (481)
.|-|-+||.. +....+++...|+..|..+-..+-+. +..|+.+. .++...+- ..
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa------------HR~p~~l~-----------~~~~~~~~-~~ 55 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA------------HRTPERLL-----------EFVKEYEA-RG 55 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T------------TTSHHHHH-----------HHHHHTTT-TT
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec------------cCCHHHHH-----------HHHHHhcc-CC
Confidence 4555678776 67778889999999887765555432 22343322 22222111 23
Q ss_pred cCcceEEeccCch----hHHHHHhcCCcEEecccccchhh----HHHHHHHhhceeeeecc--CcccccccCHHHHHHHH
Q 045281 359 ESVGGFVTHCGWN----SVLEGVCAGVPMLAWPLYAEQKM----IKAVVVEEMKVGLAVTR--SEEEERLVSAAELEQRV 428 (481)
Q Consensus 359 ~~~~~~vtHgG~g----s~~eal~~GvP~v~~P~~~DQ~~----na~~v~~~~G~G~~l~~--~~~~~~~~~~~~l~~av 428 (481)
+++ ||.=.|.. ++..++. -.|+|.+|...++.. ....+.-=-|+++..-. + - .+...++-.|
T Consensus 56 ~~v--iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~--~---~nAA~~A~~I 127 (150)
T PF00731_consen 56 ADV--IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINN--G---FNAALLAARI 127 (150)
T ss_dssp ESE--EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTH--H---HHHHHHHHHH
T ss_pred CEE--EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccC--c---hHHHHHHHHH
Confidence 445 88777753 4555555 799999999776442 22222111144433322 1 1 4555555444
Q ss_pred HHHhcCchHHHHHHHHHHHHHHHHH
Q 045281 429 SELMDSEKGRAVKERVVEMKEAAAA 453 (481)
Q Consensus 429 ~~il~~~~~~~~~~~a~~l~~~~~~ 453 (481)
..+ .|++ ++++.+..++.+++
T Consensus 128 La~-~d~~---l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 128 LAL-KDPE---LREKLRAYREKMKE 148 (150)
T ss_dssp HHT-T-HH---HHHHHHHHHHHHHH
T ss_pred Hhc-CCHH---HHHHHHHHHHHHHc
Confidence 332 5676 88888888887764
No 191
>PRK07773 replicative DNA helicase; Validated
Probab=61.05 E-value=16 Score=40.72 Aligned_cols=124 Identities=10% Similarity=0.103 Sum_probs=72.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~-G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
|++..-|+.|-+.-.+.+|...+.+ | ..|.|++-+.... +.+.++.+...++....+....+. .
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~--~~V~~fSlEms~~------ql~~R~~s~~~~i~~~~i~~g~l~--~----- 284 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHR--LAVAIFSLEMSKE------QLVMRLLSAEAKIKLSDMRSGRMS--D----- 284 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCCCHH------HHHHHHHHHhcCCCHHHHhcCCCC--H-----
Confidence 6677779999999999999998754 7 8899998664432 245554443345544443222111 0
Q ss_pred CChHHHHHHHHHH--------------hhHHHHHHHHHhhccCCccEEEECCCCchh-------------------HHHH
Q 045281 84 VDLPALAYELGEL--------------NNPKLHETLITISKRSNLKAFVIDFFCSPA-------------------FQVS 130 (481)
Q Consensus 84 ~~~~~~~~~~~~~--------------~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~-------------------~~vA 130 (481)
.-...+...+.. ....++..++++.+..+.|+||.|.+..-. -.+|
T Consensus 285 -~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lA 363 (886)
T PRK07773 285 -DDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLA 363 (886)
T ss_pred -HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 000111111111 123344444444434589999999943321 1267
Q ss_pred hhccCCCeEEEeccc
Q 045281 131 SSTLSIPTYYYFTSG 145 (481)
Q Consensus 131 ~~~lgIP~v~~~~~~ 145 (481)
+.++||++.++...
T Consensus 364 -kel~vpvi~lsQLn 377 (886)
T PRK07773 364 -KELEVPVVALSQLS 377 (886)
T ss_pred -HHHCCcEEEecccC
Confidence 89999999887654
No 192
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=60.94 E-value=2.1e+02 Score=29.58 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=73.8
Q ss_pred cEEecccchHH---hhhccCcceEEe--ccCchhHH-HHHhcCC----cEEecccccchhhHHHHHHHhhceeeeeccCc
Q 045281 344 LVVESWAPQVE---VLNHESVGGFVT--HCGWNSVL-EGVCAGV----PMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSE 413 (481)
Q Consensus 344 ~~~~~~vpq~~---lL~~~~~~~~vt--HgG~gs~~-eal~~Gv----P~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~ 413 (481)
+.+.+.+|+.+ ++..+++ ++|| .-|.|-+. |.++++. |+|.--+.+ |. +.+.-++.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa---~~l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA---VELKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch---hhcCCCEEECC--
Confidence 34557788766 5556777 3444 35888554 9999877 555544432 22 34455788888
Q ss_pred ccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhc
Q 045281 414 EEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRGC 476 (481)
Q Consensus 414 ~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~~ 476 (481)
.+.++++++|.++|+.+. ++-++|.+++.+.+++ -+...=.+.|++++....
T Consensus 433 -----~d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 433 -----YDPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQA 484 (487)
T ss_pred -----CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhcc
Confidence 689999999999999774 2346666777766653 344466778887776543
No 193
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=60.79 E-value=34 Score=31.60 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 17 NSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 17 ~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
-=+.+|++.|. .+ ++|+++.|...
T Consensus 14 ~Gi~aL~~al~-~~--~dV~VVAP~~~ 37 (252)
T COG0496 14 PGIRALARALR-EG--ADVTVVAPDRE 37 (252)
T ss_pred HHHHHHHHHHh-hC--CCEEEEccCCC
Confidence 34567888888 88 99999996544
No 194
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=60.59 E-value=38 Score=34.27 Aligned_cols=34 Identities=12% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEE
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYY 141 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~ 141 (481)
.+.+.+++. +||++|.+.. ...+| +++|||++.+
T Consensus 362 el~~~i~~~----~pdliig~~~---~~~~a-~~~~ip~i~~ 395 (428)
T cd01965 362 DLESLAKEE----PVDLLIGNSH---GRYLA-RDLGIPLVRV 395 (428)
T ss_pred HHHHHhhcc----CCCEEEECch---hHHHH-HhcCCCEEEe
Confidence 444555555 8999999974 46788 9999999854
No 195
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=59.51 E-value=30 Score=35.08 Aligned_cols=38 Identities=11% Similarity=0.093 Sum_probs=31.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAPF 44 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~-~G~~h~Vt~~~~~~~~ 44 (481)
+++..-|+.|-+.-.+.+|..++. .| ..|.|++.+...
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g--~~vl~~SlEm~~ 236 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEG--KPVAFFSLEMSA 236 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC--CeEEEEeCcCCH
Confidence 566777999999999999999875 68 899999976543
No 196
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=59.39 E-value=1.3e+02 Score=26.66 Aligned_cols=102 Identities=11% Similarity=0.112 Sum_probs=58.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
-|.+++..+.|-+...+.+|-+.+.+| ++|.++=.-...... .-...+++ .+++.+.....+ .. +...
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G--~~V~ivQFlKg~~~~-GE~~~l~~----l~~v~~~~~g~~-~~----~~~~ 91 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHG--KKVGVVQFIKGAWST-GERNLLEF----GGGVEFHVMGTG-FT----WETQ 91 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEEEEecCCCcc-CHHHHHhc----CCCcEEEECCCC-Cc----ccCC
Confidence 788999999999999999999999999 999987532111000 11112222 257888876543 21 1111
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCC
Q 045281 84 VDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFC 123 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~ 123 (481)
+... -...........++.+. +..+|+||.|-+.
T Consensus 92 -~~~e-~~~~~~~~~~~a~~~l~----~~~ydlvVLDEi~ 125 (191)
T PRK05986 92 -DRER-DIAAAREGWEEAKRMLA----DESYDLVVLDELT 125 (191)
T ss_pred -CcHH-HHHHHHHHHHHHHHHHh----CCCCCEEEEehhh
Confidence 1111 11122222222333333 3489999999854
No 197
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=59.28 E-value=32 Score=33.16 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=35.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||+++-....|++-=...+.+.|++.-|+.++++++..
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 69999999999999999999999999899999999954
No 198
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=59.27 E-value=29 Score=29.59 Aligned_cols=35 Identities=23% Similarity=0.086 Sum_probs=28.4
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEE
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVV 313 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~ 313 (481)
.+|+++||........++..+.+|.+.+..-|+.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 79999999998777889999999998775444444
No 199
>PRK06749 replicative DNA helicase; Provisional
Probab=59.17 E-value=20 Score=36.29 Aligned_cols=37 Identities=14% Similarity=0.169 Sum_probs=32.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
|++..-|+.|-+.-.+.+|...+..| ..|.|++.+..
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g--~~v~~fSlEMs 225 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSG--AAVGLFSLEMS 225 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcC--CCEEEEEeeCC
Confidence 56677799999999999999999999 99999987654
No 200
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=59.01 E-value=21 Score=28.51 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
|+++.+.+..-|-.-+..||..|.++| |+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G--~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAG--HEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTT--BEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCC--CeEEEECC
Confidence 689999999999999999999999999 99999853
No 201
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=58.57 E-value=69 Score=32.37 Aligned_cols=32 Identities=9% Similarity=0.112 Sum_probs=25.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+|+.++..+.. ...+++.|.+-| .+|..+++.
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elG--mevv~~~t~ 317 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESG--ADVPYVGTA 317 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCC--CEEEEEecC
Confidence 36666666555 889999999999 999988754
No 202
>PLN02470 acetolactate synthase
Probab=58.06 E-value=38 Score=35.92 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=55.0
Q ss_pred ecCCCCCCCH--HHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCcEEecccc-hH-----
Q 045281 283 CFGSLGSFSC--KQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAP-QV----- 353 (481)
Q Consensus 283 s~GS~~~~~~--~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~vp-q~----- 353 (481)
+|||....+. .....+++.|++.|.+.|+-+.++.. ..+.+.+ ..+++.++.-.. +.
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~--------------~~l~dal~~~~~i~~i~~rhE~~A~~~A 67 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS--------------MEIHQALTRSNCIRNVLCRHEQGEVFAA 67 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc--------------HHHHHHHhccCCceEEEeccHHHHHHHH
Confidence 5888774433 23567999999999999998876521 1222222 122333321111 11
Q ss_pred --HhhhccCcceEEeccCch------hHHHHHhcCCcEEecc
Q 045281 354 --EVLNHESVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 354 --~lL~~~~~~~~vtHgG~g------s~~eal~~GvP~v~~P 387 (481)
.-..+...+++++|.|-| .+.+|...++|+|++.
T Consensus 68 dgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 68 EGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 111223455699998866 6679999999999994
No 203
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=58.01 E-value=25 Score=33.84 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=30.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|.-++.|+.|-+-=.+.||++|++|| ..|-+++-.
T Consensus 52 VGNltvGGtGKTP~vi~la~~l~~rG--~~~gvvSRG 86 (336)
T COG1663 52 VGNLTVGGTGKTPVVIWLAEALQARG--VRVGVVSRG 86 (336)
T ss_pred EccEEECCCCcCHHHHHHHHHHHhcC--CeeEEEecC
Confidence 34467899999999999999999999 999998843
No 204
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=57.78 E-value=68 Score=33.07 Aligned_cols=38 Identities=8% Similarity=-0.032 Sum_probs=32.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
-+++.--|+.|-..=.+.++.+.+++| ..|.+++.+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~g--e~~~y~s~eEs 302 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANK--ERAILFAYEES 302 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCC
Confidence 356666789999999999999999999 99999996543
No 205
>PRK06904 replicative DNA helicase; Validated
Probab=57.06 E-value=7.3 Score=39.90 Aligned_cols=57 Identities=12% Similarity=0.179 Sum_probs=40.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~-~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
|++..-|+.|-+.-.+.+|...+. .| +.|.|++.+... .+.+.++.+...++....+
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g--~~Vl~fSlEMs~------~ql~~Rlla~~s~v~~~~i 281 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASE--KPVLVFSLEMPA------EQIMMRMLASLSRVDQTKI 281 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcC--CeEEEEeccCCH------HHHHHHHHHhhCCCCHHHh
Confidence 566777999999999999998875 58 999999876442 3345555444445554444
No 206
>PRK07206 hypothetical protein; Provisional
Probab=56.96 E-value=35 Score=34.27 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|+++|+++-.... ...++++++++| +++..++..
T Consensus 1 ~~k~~liv~~~~~-----~~~~~~a~~~~G--~~~v~v~~~ 34 (416)
T PRK07206 1 MMKKVVIVDPFSS-----GKFLAPAFKKRG--IEPIAVTSS 34 (416)
T ss_pred CCCeEEEEcCCch-----HHHHHHHHHHcC--CeEEEEEcC
Confidence 7789999885433 356899999999 998888743
No 207
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=56.78 E-value=1.5e+02 Score=28.24 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+|.+.-.|+.|--.=.-.|.++|.++| |+|.++...
T Consensus 53 viGITG~PGaGKSTli~~L~~~l~~~G--~rVaVlAVD 88 (323)
T COG1703 53 VIGITGVPGAGKSTLIEALGRELRERG--HRVAVLAVD 88 (323)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHHCC--cEEEEEEEC
Confidence 788888999999999999999999999 999999854
No 208
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=56.68 E-value=22 Score=32.58 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEeCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~-G~~h~Vt~~~~~~~ 43 (481)
+++...|+.|-+.-++.++..++.. | ..|.|++.+..
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~E~~ 53 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSLEMS 53 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeCCCC
Confidence 5566678999999999999999887 9 99999997654
No 209
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=56.52 E-value=42 Score=34.82 Aligned_cols=34 Identities=9% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEE
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYY 141 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~ 141 (481)
.+++++.+. +||++|.+.. +..+| +++|||++.+
T Consensus 428 ~l~~~l~~~----~~DlliG~s~---~k~~a-~~~giPlir~ 461 (515)
T TIGR01286 428 HLRSLVFTE----PVDFLIGNSY---GKYIQ-RDTLVPLIRI 461 (515)
T ss_pred HHHHHHhhc----CCCEEEECch---HHHHH-HHcCCCEEEe
Confidence 455666665 9999999864 67788 9999999854
No 210
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=56.16 E-value=37 Score=32.67 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=36.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~ 45 (481)
.|+|+-.-+.|-+.-.-.||+.|.+.| ..|.++...+.++
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g--~~VllaA~DTFRA 180 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQG--KSVLLAAGDTFRA 180 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCC--CeEEEEecchHHH
Confidence 688888899999999999999999999 9999999876544
No 211
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=55.92 E-value=26 Score=25.84 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=28.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEE
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDI 37 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~ 37 (481)
+-++++..+...|...+..+|+.|.+.| ..|..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G--~~V~~ 48 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQG--YAVFA 48 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCC--CEEEE
Confidence 4678888899999999999999999999 65554
No 212
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=55.75 E-value=1.2e+02 Score=25.32 Aligned_cols=28 Identities=14% Similarity=0.199 Sum_probs=21.7
Q ss_pred cceEEeccCch------hHHHHHhcCCcEEeccc
Q 045281 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 361 ~~~~vtHgG~g------s~~eal~~GvP~v~~P~ 388 (481)
..+++.|.|-| .+.+|...++|+|++.-
T Consensus 60 ~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 60 PGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 33488887755 56688999999999954
No 213
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=55.69 E-value=53 Score=28.54 Aligned_cols=104 Identities=20% Similarity=0.303 Sum_probs=66.6
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchh-hHhhhcCCCcEEecccchHHhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEG-FLDRTKDRGLVVESWAPQVEVL 356 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~vpq~~lL 356 (481)
.+..|++|.+. +++++.++..|.+++..-.... +.. +. ...+ .+.+..++|
T Consensus 38 tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~--------------~~~~~~------~~~~-~~~~l~ell 89 (178)
T PF02826_consen 38 TVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK--------------PEEGAD------EFGV-EYVSLDELL 89 (178)
T ss_dssp EEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH--------------HHHHHH------HTTE-EESSHHHHH
T ss_pred EEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC--------------hhhhcc------cccc-eeeehhhhc
Confidence 38888998887 6788888888988765544320 010 11 0112 566889999
Q ss_pred hccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhcee-eeeccCcccccccCHHHHHHHHHH
Q 045281 357 NHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG-LAVTRSEEEERLVSAAELEQRVSE 430 (481)
Q Consensus 357 ~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~~~~~~~l~~av~~ 430 (481)
+.+++ ++.|+-.+. ......|+..+ +.++=| +.++.. +.+.++.+.|.+++++
T Consensus 90 ~~aDi--v~~~~plt~----------------~T~~li~~~~l-~~mk~ga~lvN~a--RG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 90 AQADI--VSLHLPLTP----------------ETRGLINAEFL-AKMKPGAVLVNVA--RGELVDEDALLDALES 143 (178)
T ss_dssp HH-SE--EEE-SSSST----------------TTTTSBSHHHH-HTSTTTEEEEESS--SGGGB-HHHHHHHHHT
T ss_pred chhhh--hhhhhcccc----------------ccceeeeeeee-eccccceEEEecc--chhhhhhhHHHHHHhh
Confidence 99999 888764332 13567778888 466755 666777 7778888888888753
No 214
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.44 E-value=41 Score=33.61 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=36.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVT 46 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~ 46 (481)
.|+++-.=+.|-+.-.-.||+.|.++| +.|.+++...++..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~--~kvllVaaD~~RpA 142 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKG--KKVLLVAADTYRPA 142 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcC--CceEEEecccCChH
Confidence 577777889999999999999999999 99999998766553
No 215
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=55.22 E-value=1.1e+02 Score=28.32 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.2
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 19 MVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 19 ~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+.+|+++|.+ + |+|+++.|...
T Consensus 16 l~aL~~~l~~-~--~~V~VvAP~~~ 37 (253)
T PRK13933 16 INTLAELLSK-Y--HEVIIVAPENQ 37 (253)
T ss_pred HHHHHHHHHh-C--CcEEEEccCCC
Confidence 7788888865 6 89999986544
No 216
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=53.93 E-value=19 Score=29.93 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=33.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
++||++.+.+..||-.-.--+++.|+..| .+|....
T Consensus 12 rprvlvak~GlDgHd~gakvia~~l~d~G--feVi~~g 47 (143)
T COG2185 12 RPRVLVAKLGLDGHDRGAKVIARALADAG--FEVINLG 47 (143)
T ss_pred CceEEEeccCccccccchHHHHHHHHhCC--ceEEecC
Confidence 45999999999999999999999999999 9998865
No 217
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=52.50 E-value=61 Score=28.76 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=41.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLP 70 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 70 (481)
+.|+|+-..+.|-+.=...||..+..+| .+|.+++....+.. ..+.+..+ +...++.+....
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~--~~v~lis~D~~R~g---a~eQL~~~-a~~l~vp~~~~~ 63 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKG--KKVALISADTYRIG---AVEQLKTY-AEILGVPFYVAR 63 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSSTH---HHHHHHHH-HHHHTEEEEESS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhcc--ccceeecCCCCCcc---HHHHHHHH-HHHhccccchhh
Confidence 3577777789999999999999999999 99999997655332 11112111 122477777754
No 218
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=52.24 E-value=8.7 Score=35.03 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=23.6
Q ss_pred CccEEE-ECCCCc-hhHHHHhhccCCCeEEEecccH
Q 045281 113 NLKAFV-IDFFCS-PAFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 113 ~pD~vV-~D~~~~-~~~~vA~~~lgIP~v~~~~~~~ 146 (481)
-||+++ .|+..- -+..=| +++|||+|.++-+-+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA-~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEA-NKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHH-HHcCCCEEEEecCCC
Confidence 488865 777333 355567 999999998877654
No 219
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=51.62 E-value=27 Score=28.50 Aligned_cols=36 Identities=8% Similarity=0.167 Sum_probs=28.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|||++.-.|+.+=.. ...+.++|.++| ++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g--~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAG--WEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTT--SEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCC--CEEEEEECC
Confidence 467777767655555 999999999999 999998865
No 220
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=51.11 E-value=1.6e+02 Score=25.21 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=57.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC-CCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP-FVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRS 82 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~-~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 82 (481)
-|.+.+.++.|-+.-.+.+|-+.+.+| ++|.|+=.-.. ... .-...+.+ .+++.+...... .. +..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g--~~v~~vQFlKg~~~~--gE~~~l~~----l~~v~~~~~g~~-~~----~~~ 70 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHG--YRVGVVQFLKGGWKY--GELKALER----LPNIEIHRMGRG-FF----WTT 70 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEEeCCCCcc--CHHHHHHh----CCCcEEEECCCC-Cc----cCC
Confidence 467788899999999999999999999 99999431111 011 11112333 257888886543 11 111
Q ss_pred CCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCC
Q 045281 83 PVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFC 123 (481)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~ 123 (481)
. +... -...........++.+. ...+|+||.|-+.
T Consensus 71 ~-~~~~-~~~~a~~~~~~a~~~~~----~~~~dLlVLDEi~ 105 (159)
T cd00561 71 E-NDEE-DIAAAAEGWAFAKEAIA----SGEYDLVILDEIN 105 (159)
T ss_pred C-ChHH-HHHHHHHHHHHHHHHHh----cCCCCEEEEechH
Confidence 1 1111 11122222223333333 3489999999854
No 221
>PRK00784 cobyric acid synthase; Provisional
Probab=50.83 E-value=1.8e+02 Score=29.99 Aligned_cols=38 Identities=8% Similarity=0.214 Sum_probs=31.5
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 1 MKDTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 1 m~~~il~~~~-~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
|++++++... ...|-+.=...|++.|+++| .+|..+-+
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G--~~v~~~Kp 39 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILARRG--YRVAPFKA 39 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEecccc
Confidence 6666777644 56999999999999999999 99988764
No 222
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=49.32 E-value=34 Score=30.48 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=35.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
++|++.+.++-.|-....-++..|.++| ++|+++....+
T Consensus 83 ~~vl~~~~~gd~H~lG~~~v~~~l~~~G--~~vi~lG~~~p 121 (201)
T cd02070 83 GKVVIGTVEGDIHDIGKNLVATMLEANG--FEVIDLGRDVP 121 (201)
T ss_pred CeEEEEecCCccchHHHHHHHHHHHHCC--CEEEECCCCCC
Confidence 5899999999999999999999999999 99998875443
No 223
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=49.11 E-value=94 Score=26.84 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=44.1
Q ss_pred EEeCchhhhHHHHHHHHcccCCCCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCCCCCHHHH
Q 045281 216 IVNTFELLEERAIKAMLEGQCTPGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLGSFSCKQL 295 (481)
Q Consensus 216 l~~s~~~le~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~~~~~~~~ 295 (481)
++-+-++.-......+...+ |++..+|-....... ....++.+.+....++ +|+|++|+=- ...++
T Consensus 51 llG~~~~~~~~~~~~l~~~y-------p~l~i~g~~~g~~~~----~~~~~i~~~I~~~~pd-iv~vglG~Pk--QE~~~ 116 (171)
T cd06533 51 LLGAKPEVLEKAAERLRARY-------PGLKIVGYHHGYFGP----EEEEEIIERINASGAD-ILFVGLGAPK--QELWI 116 (171)
T ss_pred EECCCHHHHHHHHHHHHHHC-------CCcEEEEecCCCCCh----hhHHHHHHHHHHcCCC-EEEEECCCCH--HHHHH
Confidence 44455555555555666665 788888754333322 2233466666654443 9999988643 12222
Q ss_pred HHHHHHHHhCCCcEEEEEeC
Q 045281 296 KEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 296 ~~~~~al~~~~~~~iw~~~~ 315 (481)
.... ...+..++.-+|+
T Consensus 117 ~~~~---~~l~~~v~~~vG~ 133 (171)
T cd06533 117 ARHK---DRLPVPVAIGVGG 133 (171)
T ss_pred HHHH---HHCCCCEEEEece
Confidence 2222 2335555555554
No 224
>PRK07004 replicative DNA helicase; Provisional
Probab=48.99 E-value=56 Score=33.44 Aligned_cols=57 Identities=14% Similarity=0.311 Sum_probs=39.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
+++..-|+.|-+.-.+.+|..++ +.| ..|.|++.+.... +.+.++.+...++....+
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~--~~v~~fSlEM~~~------ql~~R~la~~~~v~~~~i 273 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYG--LPVAVFSMEMPGT------QLAMRMLGSVGRLDQHRM 273 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcC--CeEEEEeCCCCHH------HHHHHHHHhhcCCCHHHH
Confidence 56677799999999999999886 468 8999998664432 234554433344444333
No 225
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=48.93 E-value=71 Score=27.62 Aligned_cols=61 Identities=11% Similarity=0.192 Sum_probs=37.7
Q ss_pred EEeCchhhhHHHHHHHHcccCCCCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCCC
Q 045281 216 IVNTFELLEERAIKAMLEGQCTPGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSLG 288 (481)
Q Consensus 216 l~~s~~~le~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~~ 288 (481)
++-+.++.-......+...+ |.+..+|-....... ...+++.+.+.+..++ +|+|++|+--
T Consensus 53 llG~~~~~~~~~~~~l~~~y-------P~l~ivg~~~g~f~~----~~~~~i~~~I~~~~pd-iv~vglG~Pk 113 (172)
T PF03808_consen 53 LLGGSEEVLEKAAANLRRRY-------PGLRIVGYHHGYFDE----EEEEAIINRINASGPD-IVFVGLGAPK 113 (172)
T ss_pred EEeCCHHHHHHHHHHHHHHC-------CCeEEEEecCCCCCh----hhHHHHHHHHHHcCCC-EEEEECCCCH
Confidence 44555555556666677666 788888755443322 3456677777654443 9999988643
No 226
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.79 E-value=2.5e+02 Score=27.41 Aligned_cols=127 Identities=12% Similarity=0.044 Sum_probs=73.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLR 81 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (481)
|+|+.++-.|--||--.|.-=|..|++.| ..|.++..-.... .+... +.|.|+++.++....- ....
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~g--f~VdliGy~~s~p--------~e~l~-~hprI~ih~m~~l~~~--~~~p 78 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKLG--FQVDLIGYVESIP--------LEELL-NHPRIRIHGMPNLPFL--QGGP 78 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHcC--CeEEEEEecCCCC--------hHHHh-cCCceEEEeCCCCccc--CCCc
Confidence 45888999999999999999999999999 9999998433211 12222 2589999999765332 1111
Q ss_pred CCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECC-CCchhHHHH---hhccCCCeEEEecccHHH
Q 045281 82 SPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDF-FCSPAFQVS---SSTLSIPTYYYFTSGGSG 148 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~-~~~~~~~vA---~~~lgIP~v~~~~~~~~~ 148 (481)
. ........+-....-+..++. ..++|.++... =+.+...++ +...|..+++=|....|.
T Consensus 79 ~---~~~l~lKvf~Qfl~Ll~aL~~----~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 79 R---VLFLPLKVFWQFLSLLWALFV----LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred h---hhhhHHHHHHHHHHHHHHHHh----ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1 111111111111112223332 24888887654 333344333 134577777777666554
No 227
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=46.41 E-value=1.4e+02 Score=26.67 Aligned_cols=88 Identities=16% Similarity=0.019 Sum_probs=46.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLR 81 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (481)
++||+++..+..+-+. +|.+++.+.+-.++|.++.+.... . ...+... ..++.+..++.....
T Consensus 1 m~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~~~~-~--~~~~~a~-----~~gIp~~~~~~~~~~------ 63 (200)
T PRK05647 1 MKRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISDRPD-A--YGLERAE-----AAGIPTFVLDHKDFP------ 63 (200)
T ss_pred CceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEecCcc-c--hHHHHHH-----HcCCCEEEECccccC------
Confidence 1578888876644444 555667776422777776544321 1 1122222 236777665432111
Q ss_pred CCCChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECC
Q 045281 82 SPVDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDF 121 (481)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~ 121 (481)
+. ......+.+.++++ +||++|+-.
T Consensus 64 ~~-----------~~~~~~~~~~l~~~----~~D~iv~~~ 88 (200)
T PRK05647 64 SR-----------EAFDAALVEALDAY----QPDLVVLAG 88 (200)
T ss_pred ch-----------hHhHHHHHHHHHHh----CcCEEEhHH
Confidence 00 01122455666776 899998754
No 228
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=46.22 E-value=40 Score=29.98 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=37.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~ 45 (481)
.+|++.+.++-.|-....-++..|..+| .+|+++....+.+
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G--~~vi~LG~~vp~e 125 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANG--FDVIDLGRDVPID 125 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCC--cEEEECCCCCCHH
Confidence 5899999999999999999999999999 9999998765533
No 229
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=45.91 E-value=60 Score=32.70 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=21.4
Q ss_pred CccEEEECCCCchhHHHHhhccCCCeEEEe
Q 045281 113 NLKAFVIDFFCSPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 113 ~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~ 142 (481)
+||++|.... +..+| +++|||.+.+.
T Consensus 350 ~pDl~Ig~s~---~~~~a-~~~giP~~r~~ 375 (416)
T cd01980 350 RPDLAIGTTP---LVQYA-KEKGIPALYYT 375 (416)
T ss_pred CCCEEEeCCh---hhHHH-HHhCCCEEEec
Confidence 9999998843 66788 99999998653
No 230
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=45.85 E-value=71 Score=29.76 Aligned_cols=37 Identities=8% Similarity=0.042 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+++.--|+.|-+.-.++++...+++| ..|.|++.+.+
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~~G--e~vlyis~Ee~ 75 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQASRG--NPVLFVTVESP 75 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecCC
Confidence 45566689999999999999998899 99999997643
No 231
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.67 E-value=40 Score=27.22 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=34.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
||++.+.++-.|..-..-++.-|...| .+|.+.....+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G--~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAG--FEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCC--CEEEECCCCCC
Confidence 689999999999999999999999999 99999986544
No 232
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=43.93 E-value=23 Score=35.10 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|+++|+++-.+..| +.+|+.|++++|+.+||+++.+
T Consensus 1 m~~~vvIiG~G~AG-----~~~a~~lr~~~~~~~Itvi~~~ 36 (377)
T PRK04965 1 MSNGIVIIGSGFAA-----RQLVKNIRKQDAHIPITLITAD 36 (377)
T ss_pred CCCCEEEECCcHHH-----HHHHHHHHhhCcCCCEEEEeCC
Confidence 77899999877665 7889999998888899999854
No 233
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=43.88 E-value=1.4e+02 Score=28.84 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|.=++.|++|-+-=.+.|++.|+++| .+|.+++-..
T Consensus 33 VGNitvGGTGKTP~v~~La~~l~~~G--~~~~IlSRGY 68 (311)
T TIGR00682 33 VGNLSVGGTGKTPVVVWLAELLKDRG--LRVGVLSRGY 68 (311)
T ss_pred EeccccCCcChHHHHHHHHHHHHHCC--CEEEEECCCC
Confidence 34456799999999999999999999 9999998543
No 234
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=43.29 E-value=1.3e+02 Score=28.28 Aligned_cols=38 Identities=13% Similarity=0.136 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
.|+|+..++.|-+.=...||..|++.| .+|.+++....
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g--~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQG--KSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEeCCCC
Confidence 566777789999999999999999999 99999986643
No 235
>PRK08322 acetolactate synthase; Reviewed
Probab=42.90 E-value=1.4e+02 Score=31.39 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=45.1
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc--------hHHhhhccCcceEEec
Q 045281 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP--------QVEVLNHESVGGFVTH 367 (481)
Q Consensus 296 ~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp--------q~~lL~~~~~~~~vtH 367 (481)
+.+++.|++.|.+.|+-+.+... ..+.+.+..+++.++.-.. ...-......+++++|
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~~--------------~~l~dal~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t 70 (547)
T PRK08322 5 DLFVKCLENEGVEYIFGIPGEEN--------------LDLLEALRDSSIKLILTRHEQGAAFMAATYGRLTGKAGVCLST 70 (547)
T ss_pred HHHHHHHHHcCCCEEEeCCCcch--------------HHHHHHHHhcCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEEC
Confidence 45788888889888888766410 1122222222332222111 1111112234559999
Q ss_pred cCch------hHHHHHhcCCcEEecc
Q 045281 368 CGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 368 gG~g------s~~eal~~GvP~v~~P 387 (481)
.|-| .+.+|...++|+|++-
T Consensus 71 ~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 71 LGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 8865 6779999999999984
No 236
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=42.59 E-value=54 Score=31.76 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=32.3
Q ss_pred HHHHHhhHHHHHHHHHhhccCCccEEEECCCCchh----------HHHHhhccCCCeEEEec
Q 045281 92 ELGELNNPKLHETLITISKRSNLKAFVIDFFCSPA----------FQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 92 ~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~----------~~vA~~~lgIP~v~~~~ 143 (481)
+..++....+.+.++++ +||++|+-|-+-.+ ..+. ++++||.++-..
T Consensus 63 en~eea~~~i~~mv~~~----~pD~viaGPaFnagrYG~acg~v~~aV~-e~~~IP~vtaM~ 119 (349)
T PF07355_consen 63 ENKEEALKKILEMVKKL----KPDVVIAGPAFNAGRYGVACGEVAKAVQ-EKLGIPVVTAMY 119 (349)
T ss_pred hCHHHHHHHHHHHHHhc----CCCEEEEcCCcCCchHHHHHHHHHHHHH-HhhCCCEEEEec
Confidence 34445566777777777 99999999954321 1245 789999996543
No 237
>PRK07574 formate dehydrogenase; Provisional
Probab=42.40 E-value=1.7e+02 Score=29.09 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=43.1
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.+..|++|++. +.+++.+...|..++ .+.... .+...... .++ ..+....++++
T Consensus 194 tVGIvG~G~IG-------~~vA~~l~~fG~~V~-~~dr~~-------------~~~~~~~~---~g~--~~~~~l~ell~ 247 (385)
T PRK07574 194 TVGIVGAGRIG-------LAVLRRLKPFDVKLH-YTDRHR-------------LPEEVEQE---LGL--TYHVSFDSLVS 247 (385)
T ss_pred EEEEECCCHHH-------HHHHHHHHhCCCEEE-EECCCC-------------CchhhHhh---cCc--eecCCHHHHhh
Confidence 38889999987 567777777787754 332210 11111111 122 12356788999
Q ss_pred ccCcceEEeccCchhHHHH
Q 045281 358 HESVGGFVTHCGWNSVLEG 376 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~ea 376 (481)
.+++ ++.|+-.+.-.+.
T Consensus 248 ~aDv--V~l~lPlt~~T~~ 264 (385)
T PRK07574 248 VCDV--VTIHCPLHPETEH 264 (385)
T ss_pred cCCE--EEEcCCCCHHHHH
Confidence 9999 9999887654444
No 238
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=42.21 E-value=1.2e+02 Score=25.99 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=21.9
Q ss_pred cceEEeccCch------hHHHHHhcCCcEEecc
Q 045281 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~vtHgG~g------s~~eal~~GvP~v~~P 387 (481)
.+++++|+|-| .+.+|...++|+|++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 34488898865 5669999999999994
No 239
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=41.47 E-value=1.3e+02 Score=30.46 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=34.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~ 44 (481)
.|+++-.++.|-+.=...||..|.++| ++|.+++...++
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccc
Confidence 577788899999999999999999999 999999976554
No 240
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=41.34 E-value=35 Score=30.22 Aligned_cols=34 Identities=18% Similarity=0.129 Sum_probs=24.7
Q ss_pred CCccEEE-ECCC-CchhHHHHhhccCCCeEEEecccH
Q 045281 112 SNLKAFV-IDFF-CSPAFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 112 ~~pD~vV-~D~~-~~~~~~vA~~~lgIP~v~~~~~~~ 146 (481)
..||+|| .|+. -..+..=| .++|||.|.+.-+.+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea-~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREA-SKLGIPVIAIVDTNC 161 (193)
T ss_pred cCCCEEEEeCCccchHHHHHH-HHcCCCEEEEecCCC
Confidence 5789877 5653 33355677 899999999877653
No 241
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=41.08 E-value=1.7e+02 Score=31.04 Aligned_cols=78 Identities=21% Similarity=0.190 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc--------hHHhhhccCcceEEec
Q 045281 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP--------QVEVLNHESVGGFVTH 367 (481)
Q Consensus 296 ~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp--------q~~lL~~~~~~~~vtH 367 (481)
+.+++.|++.|.+.|+-+.++. -..+.+.+...++..+.-.. ...-......+++++|
T Consensus 5 ~~l~~~L~~~Gv~~vFg~pG~~--------------~~~l~~al~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t 70 (586)
T PRK06276 5 EAIIKALEAEGVKIIFGYPGGA--------------LLPFYDALYDSDLIHILTRHEQAAAHAADGYARASGKVGVCVAT 70 (586)
T ss_pred HHHHHHHHHcCCCEEEECCCcc--------------hHHHHHHHHhCCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4578888888888888776541 01222222112332211111 1111112234459999
Q ss_pred cCch------hHHHHHhcCCcEEecc
Q 045281 368 CGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 368 gG~g------s~~eal~~GvP~v~~P 387 (481)
.|-| .+.+|...++|+|++-
T Consensus 71 ~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 71 SGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 8855 6779999999999983
No 242
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=40.87 E-value=1.7e+02 Score=27.56 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=20.1
Q ss_pred HHHHHHHHhCCCCeEEEEEeCCCCCCC
Q 045281 20 VELGKLILTYHPCFSIDIIIPTAPFVT 46 (481)
Q Consensus 20 l~La~~L~~~G~~h~Vt~~~~~~~~~~ 46 (481)
.+|..+|.+.| |+|+++|-..+.+.
T Consensus 12 ~~L~~~L~~~g--h~v~iltR~~~~~~ 36 (297)
T COG1090 12 RALTARLRKGG--HQVTILTRRPPKAS 36 (297)
T ss_pred HHHHHHHHhCC--CeEEEEEcCCcchh
Confidence 46888999999 99999996655443
No 243
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=40.83 E-value=35 Score=29.68 Aligned_cols=31 Identities=16% Similarity=0.382 Sum_probs=21.0
Q ss_pred hccCcceEEeccCchhHHHHHhcCCcEEeccccc
Q 045281 357 NHESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYA 390 (481)
Q Consensus 357 ~~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~ 390 (481)
..+++ +|++||......... ++|+|-+|+.+
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 34555 999999988888877 99999999854
No 244
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=40.63 E-value=82 Score=27.01 Aligned_cols=25 Identities=12% Similarity=0.187 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHHh-CCCCeEEEEEe
Q 045281 15 HLNSMVELGKLILT-YHPCFSIDIII 39 (481)
Q Consensus 15 H~~P~l~La~~L~~-~G~~h~Vt~~~ 39 (481)
|.....+|+++|.+ +||+++|.++-
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~D 26 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVVD 26 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEe
Confidence 77888999999988 67667777643
No 245
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=40.01 E-value=1.6e+02 Score=26.42 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=26.2
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 9 TSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 9 ~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
+-+..|-+.=.+.|++.|+++| .+|.++-+
T Consensus 7 t~t~~GKT~vs~~L~~~l~~~g--~~v~~~KP 36 (222)
T PRK00090 7 TDTDVGKTVVTAALAQALREAG--YSVAGYKP 36 (222)
T ss_pred CCCCcCHHHHHHHHHHHHHHcC--CceEEEee
Confidence 4467899999999999999999 99988763
No 246
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=39.68 E-value=53 Score=30.59 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=28.9
Q ss_pred HHHHHHHHhhccCCccEEEECCCC------chhHHHHhhccCCCeEEEecc
Q 045281 100 KLHETLITISKRSNLKAFVIDFFC------SPAFQVSSSTLSIPTYYYFTS 144 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~------~~~~~vA~~~lgIP~v~~~~~ 144 (481)
.|.+.+++. .||+|++-..+ .-+..+| +.||+|++++...
T Consensus 103 ~La~ai~~~----~~DLVl~G~~s~D~~tgqvg~~lA-e~Lg~P~vt~v~~ 148 (256)
T PRK03359 103 ALAAAAQKA----GFDLILCGDGSSDLYAQQVGLLVG-EILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHh----CCCEEEEcCccccCCCCcHHHHHH-HHhCCCceeeEEE
Confidence 445566665 79999975432 2356789 9999999987765
No 247
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=39.12 E-value=33 Score=29.72 Aligned_cols=37 Identities=14% Similarity=0.020 Sum_probs=32.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+++.--|+.|-..=.+.++.+.++.| ..|.|++.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC--CcEEEEECCCC
Confidence 46667789999999999999999999 99999997644
No 248
>PRK10867 signal recognition particle protein; Provisional
Probab=38.98 E-value=1.3e+02 Score=30.46 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=33.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEeCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAPF 44 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~-G~~h~Vt~~~~~~~~ 44 (481)
.|+++..++.|-+.=...||..|+++ | ..|.+++....+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R 141 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYR 141 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccc
Confidence 56777778999999999999999999 9 999999976543
No 249
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=38.97 E-value=1.1e+02 Score=26.73 Aligned_cols=60 Identities=10% Similarity=0.209 Sum_probs=33.1
Q ss_pred EEEeCchhhhHHHHHHHHcccCCCCCCCCCeEeccccCCCCCCCCCCCCcccccccccCCCCCcEEEEecCCC
Q 045281 215 LIVNTFELLEERAIKAMLEGQCTPGETLPPFYCIGPVVGGGNGENRGRDRHESLSWLDSKPSRSVLLLCFGSL 287 (481)
Q Consensus 215 ~l~~s~~~le~~~~~~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~GS~ 287 (481)
.++-+-++.-......+...+ |++..+|- .....+ ...+++.+.+....++ +|+|++|+=
T Consensus 52 fllG~~~~v~~~~~~~l~~~y-------P~l~i~g~-~g~f~~----~~~~~i~~~I~~s~~d-il~VglG~P 111 (177)
T TIGR00696 52 FLYGGKPDVLQQLKVKLIKEY-------PKLKIVGA-FGPLEP----EERKAALAKIARSGAG-IVFVGLGCP 111 (177)
T ss_pred EEECCCHHHHHHHHHHHHHHC-------CCCEEEEE-CCCCCh----HHHHHHHHHHHHcCCC-EEEEEcCCc
Confidence 345555666556666666665 66666663 221111 2234455555553333 999998863
No 250
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=38.85 E-value=1.5e+02 Score=23.46 Aligned_cols=85 Identities=13% Similarity=0.210 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHHHHHHHH
Q 045281 15 HLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPALAYELG 94 (481)
Q Consensus 15 H~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (481)
+=.-++.+|+.|.+.| +++ ++| . .....+.. .|+.+..+... + ++
T Consensus 10 ~K~~~~~~a~~l~~~G--~~i-~AT-~-------gTa~~L~~-----~Gi~~~~v~~~--~--~~--------------- 54 (112)
T cd00532 10 VKAMLVDLAPKLSSDG--FPL-FAT-G-------GTSRVLAD-----AGIPVRAVSKR--H--ED--------------- 54 (112)
T ss_pred cHHHHHHHHHHHHHCC--CEE-EEC-c-------HHHHHHHH-----cCCceEEEEec--C--CC---------------
Confidence 4456889999999999 776 344 2 22223443 36776665322 1 11
Q ss_pred HHhhHHHHHHHHH-hhccCCccEEEE--CCCC-------chh-HHHHhhccCCCeEEE
Q 045281 95 ELNNPKLHETLIT-ISKRSNLKAFVI--DFFC-------SPA-FQVSSSTLSIPTYYY 141 (481)
Q Consensus 95 ~~~~~~l~~~l~~-~~~~~~pD~vV~--D~~~-------~~~-~~vA~~~lgIP~v~~ 141 (481)
..+.+.+.+++ - ++|+||. |+.. ... ...| -..+||+++-
T Consensus 55 --g~~~i~~~i~~~g----~idlVIn~~~~~~~~~~~~dg~~iRR~A-~~~~Ip~~T~ 105 (112)
T cd00532 55 --GEPTVDAAIAEKG----KFDVVINLRDPRRDRCTDEDGTALLRLA-RLYKIPVTTP 105 (112)
T ss_pred --CCcHHHHHHhCCC----CEEEEEEcCCCCcccccCCChHHHHHHH-HHcCCCEEEC
Confidence 12334455544 4 8999997 3322 122 2367 8899999953
No 251
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=38.79 E-value=72 Score=28.78 Aligned_cols=37 Identities=16% Similarity=-0.016 Sum_probs=30.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+++..-|+.|-..-.+.++...+++| ..|.+++.+..
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~g--~~~~y~s~e~~ 55 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKNG--EKAMYISLEER 55 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEECCCC
Confidence 45555579999999999999888889 99999997654
No 252
>PRK05920 aromatic acid decarboxylase; Validated
Probab=38.29 E-value=44 Score=29.89 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=29.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|.+||++.-.| .....=...+.+.|.+.| ++|.++.+.
T Consensus 2 ~~krIllgITG-siaa~ka~~lvr~L~~~g--~~V~vi~T~ 39 (204)
T PRK05920 2 KMKRIVLAITG-ASGAIYGVRLLECLLAAD--YEVHLVISK 39 (204)
T ss_pred CCCEEEEEEeC-HHHHHHHHHHHHHHHHCC--CEEEEEECh
Confidence 55677666444 455578899999999999 999999865
No 253
>PRK04328 hypothetical protein; Provisional
Probab=37.94 E-value=3.3e+02 Score=25.10 Aligned_cols=37 Identities=14% Similarity=-0.044 Sum_probs=29.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+++.--|+.|-..=.+.++.+-+++| ..+.+++....
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~~g--e~~lyis~ee~ 62 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQMG--EPGVYVALEEH 62 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEEeeCC
Confidence 45566689999998898888877889 99999997544
No 254
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=37.87 E-value=2.6e+02 Score=24.87 Aligned_cols=34 Identities=9% Similarity=0.173 Sum_probs=28.7
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 6 VLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 6 l~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
++......|-..-++.-++....+| -+|.++++.
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~~~g--~~v~vfkp~ 41 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYKEAG--MKVLVFKPA 41 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHHHcC--CeEEEEecc
Confidence 3334458899999999999999999 999999864
No 255
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=37.79 E-value=1.8e+02 Score=23.08 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=50.7
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCCh
Q 045281 7 LYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDL 86 (481)
Q Consensus 7 ~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 86 (481)
+++.... +-.=++.+|+.|.+.| .++ +++. ...+.+.. .|+.+..+... .+.... +
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G--~~i--~aT~-------gTa~~L~~-----~gi~~~~v~~~-----~~~~~~-~- 59 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLG--YKL--YATE-------GTADFLLE-----NGIPVTPVAWP-----SEEPQN-D- 59 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCC--CEE--EEcc-------HHHHHHHH-----cCCCceEeeec-----cCCCCC-C-
Confidence 3443333 5566889999999999 666 3433 22223332 25555444211 110010 0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCC---------CchhHHHHhhccCCCeE
Q 045281 87 PALAYELGELNNPKLHETLITISKRSNLKAFVIDFF---------CSPAFQVSSSTLSIPTY 139 (481)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~---------~~~~~~vA~~~lgIP~v 139 (481)
.+.+.+++++- ++|+||.-+. ...--..| -.+|||++
T Consensus 60 -----------~~~i~~~i~~~----~idlVIn~~~~~~~~~~~~~~~iRr~A-v~~~ip~i 105 (116)
T cd01423 60 -----------KPSLRELLAEG----KIDLVINLPSNRGKRVLDNDYVMRRAA-DDFAVPLI 105 (116)
T ss_pred -----------chhHHHHHHcC----CceEEEECCCCCCCccccCcEeeehhh-HhhCCccc
Confidence 13455666653 8999998542 12223466 88999997
No 256
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=37.71 E-value=1.1e+02 Score=32.23 Aligned_cols=94 Identities=18% Similarity=0.222 Sum_probs=53.1
Q ss_pred cchHHhhhccCcceEEeccC-ch-hHHHHHhcCCcEEeccccc-chhhHH---HHHHHhhceeeeeccCcccccccCHHH
Q 045281 350 APQVEVLNHESVGGFVTHCG-WN-SVLEGVCAGVPMLAWPLYA-EQKMIK---AVVVEEMKVGLAVTRSEEEERLVSAAE 423 (481)
Q Consensus 350 vpq~~lL~~~~~~~~vtHgG-~g-s~~eal~~GvP~v~~P~~~-DQ~~na---~~v~~~~G~G~~l~~~~~~~~~~~~~~ 423 (481)
+++.+++.-|++++|-|-=- || |=+||.++|||.|..=..+ -++.+- ... ..|+-+.-++. -+.++
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~--~~GV~VvdR~~------~n~~e 532 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPE--EYGVYVVDRRD------KNYDE 532 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHG--GGTEEEE-SSS------S-HHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCc--CCcEEEEeCCC------CCHHH
Confidence 46788888899866655211 33 7899999999999987744 222221 222 23666665554 56666
Q ss_pred HHHHHHHHh----c-Cch-HHHHHHHHHHHHHHH
Q 045281 424 LEQRVSELM----D-SEK-GRAVKERVVEMKEAA 451 (481)
Q Consensus 424 l~~av~~il----~-~~~-~~~~~~~a~~l~~~~ 451 (481)
..+.+.+.| . +.+ ....|++|+++++.+
T Consensus 533 ~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 533 SVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 666665554 2 222 456788888877763
No 257
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=37.70 E-value=2.6e+02 Score=29.68 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=45.1
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc--------hHHhhhccCcceEEe
Q 045281 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP--------QVEVLNHESVGGFVT 366 (481)
Q Consensus 295 ~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp--------q~~lL~~~~~~~~vt 366 (481)
-+.+++.|+..|.+.|+-+.++.- ..+.+.+...++.++.--. ...-......+++++
T Consensus 9 ~~~l~~~L~~~GV~~vFGvpG~~~--------------~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~ 74 (588)
T PRK07525 9 SEAFVETLQAHGITHAFGIIGSAF--------------MDASDLFPPAGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIG 74 (588)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCch--------------HHHHHHHhccCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 456888888888888887766410 1222222212222211111 111111223455999
Q ss_pred ccCch------hHHHHHhcCCcEEecc
Q 045281 367 HCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 367 HgG~g------s~~eal~~GvP~v~~P 387 (481)
|.|-| .+.+|...++|+|++-
T Consensus 75 t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 75 QNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred cCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 98865 5668999999999995
No 258
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.66 E-value=1.4e+02 Score=29.55 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=36.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVT 46 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~ 46 (481)
.|+|+-.-+.|-+.-+..||..++++| ..+.+++..+.++.
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG--~K~~LvcaDTFRag 143 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKG--YKVALVCADTFRAG 143 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcC--CceeEEeecccccc
Confidence 678888889999999999999999999 99999997766543
No 259
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=37.11 E-value=27 Score=33.70 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=24.7
Q ss_pred CCccEEE-ECC-CCchhHHHHhhccCCCeEEEecccH
Q 045281 112 SNLKAFV-IDF-FCSPAFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 112 ~~pD~vV-~D~-~~~~~~~vA~~~lgIP~v~~~~~~~ 146 (481)
..||+|| .|+ .-..+..=| .++|||.|.+.-+.+
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA-~kl~IPvIaivDTn~ 186 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEA-QRLGIPVAAIVDTNC 186 (326)
T ss_pred cCCCEEEEeCCccchHHHHHH-HHcCCCEEEEeeCCC
Confidence 3688876 676 334466677 999999999876654
No 260
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=36.91 E-value=1.9e+02 Score=30.59 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc-hH-------HhhhccCcceEEe
Q 045281 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP-QV-------EVLNHESVGGFVT 366 (481)
Q Consensus 295 ~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp-q~-------~lL~~~~~~~~vt 366 (481)
...+++.|++.|.+.|+-+.++. ...+.+.+...++..+.-.. +. .-......+++++
T Consensus 19 ~~~i~~~L~~~Gv~~vFg~pG~~--------------~~~l~~al~~~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~ 84 (571)
T PRK07710 19 AQMLIEALEKEGVEVIFGYPGGA--------------VLPLYDALYDCGIPHILTRHEQGAIHAAEGYARISGKPGVVIA 84 (571)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcc--------------hHHHHHHHHhcCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 55688888888888888776541 01233222222333332111 10 0111123445999
Q ss_pred ccCch------hHHHHHhcCCcEEecc
Q 045281 367 HCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 367 HgG~g------s~~eal~~GvP~v~~P 387 (481)
|.|-| .+.+|...++|+|++-
T Consensus 85 t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 85 TSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 98876 5679999999999983
No 261
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=36.66 E-value=92 Score=26.78 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCC-CcEEecccc--------hHHhhhccCcceEEe
Q 045281 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDR-GLVVESWAP--------QVEVLNHESVGGFVT 366 (481)
Q Consensus 296 ~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~vp--------q~~lL~~~~~~~~vt 366 (481)
+.+++.|++.|.+.++-+.+.. -..+.+.+... ++.+..-.. ...-......+++++
T Consensus 5 ~~l~~~L~~~Gv~~vfgvpG~~--------------~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~ 70 (172)
T PF02776_consen 5 EALAEALKANGVTHVFGVPGSG--------------NLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIV 70 (172)
T ss_dssp HHHHHHHHHTT-SEEEEE--GG--------------GHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEEeChh--------------HhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEe
Confidence 5578888888888888776531 01232322222 343332211 111112233444888
Q ss_pred ccCch------hHHHHHhcCCcEEeccc
Q 045281 367 HCGWN------SVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 367 HgG~g------s~~eal~~GvP~v~~P~ 388 (481)
|.|-| ++.+|...++|+|++.-
T Consensus 71 ~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 71 TSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp ETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ecccchHHHHHHHhhcccceeeEEEEec
Confidence 88754 66788999999999865
No 262
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=36.55 E-value=49 Score=30.52 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.2
Q ss_pred cCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 14 GHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 14 GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|=-.-.-.|+++|+++| |+|++++|..
T Consensus 17 GLgdv~~~L~kaL~~~G--~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQG--HDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT---EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcC--CeEEEEEccc
Confidence 33445678999999999 9999999754
No 263
>PRK14099 glycogen synthase; Provisional
Probab=36.19 E-value=54 Score=33.84 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=30.0
Q ss_pred CC-cEEEEEcC------CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 1 MK-DTIVLYTS------PGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 1 m~-~~il~~~~------~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|+ ++|++++. -+.|=-.-.-+|.++|+++| |+|.+++|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g--~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHG--VEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCC--CcEEEEeCCC
Confidence 44 38998875 23444445678999999999 9999999754
No 264
>PLN03139 formate dehydrogenase; Provisional
Probab=36.18 E-value=1.8e+02 Score=29.05 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=41.7
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.+-.|++|.+. +.+++.+...|.+++. +.... .+..... ..++. ......++++
T Consensus 201 tVGIVG~G~IG-------~~vA~~L~afG~~V~~-~d~~~-------------~~~~~~~---~~g~~--~~~~l~ell~ 254 (386)
T PLN03139 201 TVGTVGAGRIG-------RLLLQRLKPFNCNLLY-HDRLK-------------MDPELEK---ETGAK--FEEDLDAMLP 254 (386)
T ss_pred EEEEEeecHHH-------HHHHHHHHHCCCEEEE-ECCCC-------------cchhhHh---hcCce--ecCCHHHHHh
Confidence 48899999887 5677777778888644 33210 1111111 11221 1235678999
Q ss_pred ccCcceEEeccCchhHHHH
Q 045281 358 HESVGGFVTHCGWNSVLEG 376 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~ea 376 (481)
.+++ ++.|+-.+.-.+.
T Consensus 255 ~sDv--V~l~lPlt~~T~~ 271 (386)
T PLN03139 255 KCDV--VVINTPLTEKTRG 271 (386)
T ss_pred hCCE--EEEeCCCCHHHHH
Confidence 9999 9888765444333
No 265
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.17 E-value=74 Score=29.80 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=23.3
Q ss_pred ccCcceEEeccCchhHHHHHh------cCCcEEecc
Q 045281 358 HESVGGFVTHCGWNSVLEGVC------AGVPMLAWP 387 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~eal~------~GvP~v~~P 387 (481)
.+++ +|+-||-||++.+++ .++|++.+-
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN 68 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVH 68 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEe
Confidence 4566 999999999999976 488988874
No 266
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=36.15 E-value=64 Score=29.36 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=31.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
-+++.-.|+.|...-..+++...+++| ..|.|++....
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g--~~~~y~~~e~~ 64 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQG--KKVYVITTENT 64 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCC--CEEEEEEcCCC
Confidence 356667789999999999998888889 99999997543
No 267
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.70 E-value=3.9e+02 Score=25.33 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=31.1
Q ss_pred CcEEecccchH---HhhhccCcceEEeccCchhHHHHHhcCCcEEe
Q 045281 343 GLVVESWAPQV---EVLNHESVGGFVTHCGWNSVLEGVCAGVPMLA 385 (481)
Q Consensus 343 ~~~~~~~vpq~---~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~ 385 (481)
.+++.+|+||+ .||-.|++.++ . |=-|..-|..+|+|.+=
T Consensus 239 rvvklPFvpqddyd~LL~lcD~n~V--R-GEDSFVRAq~agkPflW 281 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWLCDFNLV--R-GEDSFVRAQLAGKPFLW 281 (370)
T ss_pred EEEEecCCcHhHHHHHHHhccccee--e-cchHHHHHHHcCCCcEE
Confidence 46677999974 58988998433 3 66799999999999874
No 268
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=35.56 E-value=5.6e+02 Score=27.81 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=31.7
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 1 MKDTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 1 m~~~il~~~~-~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
|.+.|++.+. +..|-+.=.+.|++.|.++| .+|.++=|
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G--~~Vg~fKP 39 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKG--VKVGFFKP 39 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEeCC
Confidence 5567777754 56899999999999999999 99999763
No 269
>PRK12342 hypothetical protein; Provisional
Probab=34.92 E-value=67 Score=29.88 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=28.6
Q ss_pred HHHHHHHHhhccCCccEEEECCCCc------hhHHHHhhccCCCeEEEecc
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCS------PAFQVSSSTLSIPTYYYFTS 144 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~------~~~~vA~~~lgIP~v~~~~~ 144 (481)
.|.+.+++. +||+|++-..+. -+..+| +.||+|++++...
T Consensus 100 ~La~~i~~~----~~DLVl~G~~s~D~~tgqvg~~lA-~~Lg~P~vt~v~~ 145 (254)
T PRK12342 100 ALAAAIEKI----GFDLLLFGEGSGDLYAQQVGLLLG-ELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHh----CCCEEEEcCCcccCCCCCHHHHHH-HHhCCCcEeeEEE
Confidence 445566665 799999754322 256788 9999999987655
No 270
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=34.86 E-value=3.2e+02 Score=27.58 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=21.7
Q ss_pred cceEEeccCch------hHHHHHhcCCcEEec
Q 045281 361 VGGFVTHCGWN------SVLEGVCAGVPMLAW 386 (481)
Q Consensus 361 ~~~~vtHgG~g------s~~eal~~GvP~v~~ 386 (481)
.+++++|.|-| .+.+|...++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 44599998865 667999999999999
No 271
>PRK06487 glycerate dehydrogenase; Provisional
Probab=34.22 E-value=1.9e+02 Score=27.92 Aligned_cols=98 Identities=22% Similarity=0.250 Sum_probs=57.3
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.+..|++|++. +++++.++..|.+++..-... -+. ...++...++|+
T Consensus 150 tvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~--------------~~~------------~~~~~~l~ell~ 196 (317)
T PRK06487 150 TLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG--------------RPA------------RPDRLPLDELLP 196 (317)
T ss_pred EEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC--------------Ccc------------cccccCHHHHHH
Confidence 38899999988 567777777888865432110 000 113557889999
Q ss_pred ccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhcee-eeeccCcccccccCHHHHHHHHH
Q 045281 358 HESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG-LAVTRSEEEERLVSAAELEQRVS 429 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~~~~~~~l~~av~ 429 (481)
.+++ ++-|+-.+.-. ....|+..+ +.++=| +.++.+ +.+.++.+.|.++++
T Consensus 197 ~sDi--v~l~lPlt~~T----------------~~li~~~~~-~~mk~ga~lIN~a--RG~vVde~AL~~AL~ 248 (317)
T PRK06487 197 QVDA--LTLHCPLTEHT----------------RHLIGAREL-ALMKPGALLINTA--RGGLVDEQALADALR 248 (317)
T ss_pred hCCE--EEECCCCChHH----------------hcCcCHHHH-hcCCCCeEEEECC--CccccCHHHHHHHHH
Confidence 9999 88887654322 233444444 234433 444444 445555555555553
No 272
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=33.96 E-value=56 Score=30.55 Aligned_cols=39 Identities=10% Similarity=0.198 Sum_probs=26.1
Q ss_pred cEEEEecCCCCCCCHH-HHHHHHHHHHh--CCCcEEEEEeCC
Q 045281 278 SVLLLCFGSLGSFSCK-QLKEMAIGLER--SGVKFLWVVRAP 316 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~-~~~~~~~al~~--~~~~~iw~~~~~ 316 (481)
.+|+|||||......+ -+..+-+.++. .+..+-|.+.+.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 3899999999865555 67778888877 578899998764
No 273
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=33.93 E-value=2.5e+02 Score=28.34 Aligned_cols=30 Identities=17% Similarity=0.167 Sum_probs=25.3
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 045281 8 YTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 8 ~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
-|..+.|-+.=.+.|.++|++|| ++|.=+-
T Consensus 7 g~~SG~GKTTvT~glm~aL~~rg--~~VqpfK 36 (451)
T COG1797 7 GTSSGSGKTTVTLGLMRALRRRG--LKVQPFK 36 (451)
T ss_pred cCCCCCcHHHHHHHHHHHHHhcC--Ccccccc
Confidence 34568899999999999999999 8887654
No 274
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=33.86 E-value=80 Score=28.48 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=35.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
.+|++.+.++-.|-....-++-.|..+| .+|+++....+
T Consensus 89 ~~vvl~t~~gd~HdiG~~iv~~~l~~~G--~~Vi~LG~~vp 127 (213)
T cd02069 89 GKIVLATVKGDVHDIGKNLVGVILSNNG--YEVIDLGVMVP 127 (213)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCC--CEEEECCCCCC
Confidence 4899999999999999999999999999 99999986544
No 275
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=33.80 E-value=1.7e+02 Score=29.55 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=33.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPF 44 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~~ 44 (481)
-++++..++.|-+.=...||..|. ++| .+|.+++....+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R 140 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYR 140 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccc
Confidence 567777789999999999999997 689 999999976543
No 276
>PRK06988 putative formyltransferase; Provisional
Probab=33.71 E-value=1.6e+02 Score=28.31 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|++||+|+..+. -.+..-+.|.++| ++|..+.+..
T Consensus 1 ~~mkIvf~Gs~~-----~a~~~L~~L~~~~--~~i~~Vvt~~ 35 (312)
T PRK06988 1 MKPRAVVFAYHN-----VGVRCLQVLLARG--VDVALVVTHE 35 (312)
T ss_pred CCcEEEEEeCcH-----HHHHHHHHHHhCC--CCEEEEEcCC
Confidence 667899886443 2344556777889 9988777543
No 277
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=33.44 E-value=28 Score=31.36 Aligned_cols=113 Identities=12% Similarity=-0.018 Sum_probs=62.2
Q ss_pred CccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHHHHH
Q 045281 12 GRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPALAY 91 (481)
Q Consensus 12 ~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (481)
+..|+...+.++..++.+| =.+.|+++.. .++..+++......++....-..+.. +.+. ..++
T Consensus 90 T~~~Lr~A~~fVa~vA~r~--GiILFv~tn~------~~~~~ve~aA~r~~gy~~~~~w~~G~-----lTN~----~~l~ 152 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRG--GIILFVGTNN------GFKDLVERAARRAGGYSHNRKWLGGL-----LTNA----RELF 152 (251)
T ss_pred HHHHHHHHHHHHHHHHhcC--CeEEEEecCc------chHHHHHHHHHHhcCceeeeeeccce-----eecc----hhhc
Confidence 4567888889999999999 8888888653 34555666533333444333222211 1111 1111
Q ss_pred HHHHH---hhHHHHHHHHHhhccCCccEEE-ECCCCch-hHHHHhhccCCCeEEEecccH
Q 045281 92 ELGEL---NNPKLHETLITISKRSNLKAFV-IDFFCSP-AFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 92 ~~~~~---~~~~l~~~l~~~~~~~~pD~vV-~D~~~~~-~~~vA~~~lgIP~v~~~~~~~ 146 (481)
..... ..+....++.. ..+|||| .|+.--- +..=| .+++||.|.+.-+-+
T Consensus 153 g~~~~~~~~~pd~~~f~~t----~~~D~vvvln~~e~~sAilEA-~K~~IPTIgIVDtN~ 207 (251)
T KOG0832|consen 153 GALVRKFLSLPDALCFLPT----LTPDLVVVLNPEENHSAILEA-AKMAIPTIGIVDTNC 207 (251)
T ss_pred ccccccccCCCcceeeccc----CCcceeEecCcccccHHHHHH-HHhCCCeEEEecCCC
Confidence 11111 12222223222 3668766 5775544 44556 899999998765544
No 278
>PRK08006 replicative DNA helicase; Provisional
Probab=33.29 E-value=23 Score=36.34 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=40.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 5 IVLYTSPGRGHLNSMVELGKLIL-TYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~-~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
|++..-|+.|-+.-.+.+|...+ +.| +.|.|++.+... .+.+.++.+...++....+
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~~g--~~V~~fSlEM~~------~ql~~Rlla~~~~v~~~~i 284 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAMLQD--KPVLIFSLEMPG------EQIMMRMLASLSRVDQTRI 284 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcC--CeEEEEeccCCH------HHHHHHHHHHhcCCCHHHh
Confidence 56677799999999999999987 458 899999866432 2345555444445554444
No 279
>PRK10637 cysG siroheme synthase; Provisional
Probab=32.99 E-value=4.3e+02 Score=27.02 Aligned_cols=146 Identities=13% Similarity=0.102 Sum_probs=76.1
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.++.|+-|... ..=++.|...|..+.++... +.+++.+-....++....---+...|.
T Consensus 14 ~vlvvGgG~vA-------~rk~~~ll~~ga~v~visp~---------------~~~~~~~l~~~~~i~~~~~~~~~~dl~ 71 (457)
T PRK10637 14 DCLLVGGGDVA-------ERKARLLLDAGARLTVNALA---------------FIPQFTAWADAGMLTLVEGPFDESLLD 71 (457)
T ss_pred EEEEECCCHHH-------HHHHHHHHHCCCEEEEEcCC---------------CCHHHHHHHhCCCEEEEeCCCChHHhC
Confidence 38888766654 12234444567776665432 223333322333444333222345566
Q ss_pred ccCcceEEeccCchhHHHHHh-----cCCcEEecccccchhhHH-----HHHHHhhceeeeeccCcccccccCHHHHHHH
Q 045281 358 HESVGGFVTHCGWNSVLEGVC-----AGVPMLAWPLYAEQKMIK-----AVVVEEMKVGLAVTRSEEEERLVSAAELEQR 427 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~eal~-----~GvP~v~~P~~~DQ~~na-----~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~a 427 (481)
.+.+ +|.--+--.+.+.++ .|++.-+ .|++..+ ..+ ++=++-+.+.+++ .++ .-...|++.
T Consensus 72 ~~~l--v~~at~d~~~n~~i~~~a~~~~~lvN~----~d~~~~~~f~~pa~~-~~g~l~iaisT~G-~sP-~~a~~lr~~ 142 (457)
T PRK10637 72 TCWL--AIAATDDDAVNQRVSEAAEARRIFCNV----VDAPKAASFIMPSII-DRSPLMVAVSSGG-TSP-VLARLLREK 142 (457)
T ss_pred CCEE--EEECCCCHHHhHHHHHHHHHcCcEEEE----CCCcccCeEEEeeEE-ecCCEEEEEECCC-CCc-HHHHHHHHH
Confidence 6666 777666655555443 4555433 3443332 233 3323555555542 111 233578888
Q ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHH
Q 045281 428 VSELMDSEKGRAVKERVVEMKEAAAAAM 455 (481)
Q Consensus 428 v~~il~~~~~~~~~~~a~~l~~~~~~~~ 455 (481)
+++++. +..+++-+.+.++++.+++..
T Consensus 143 ie~~~~-~~~~~~~~~~~~~R~~~k~~~ 169 (457)
T PRK10637 143 LESLLP-QHLGQVAKYAGQLRGRVKQQF 169 (457)
T ss_pred HHHhcc-hhHHHHHHHHHHHHHHHHHhc
Confidence 888873 335567777778888777643
No 280
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=32.82 E-value=1.7e+02 Score=25.77 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=44.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPP 72 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~ 72 (481)
|+|+..++.-|-.=+..+++.|++.| .+|.+++-....+.....+.+++++. ...+-.|..+|..
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~--I~v~vI~~G~~~~~~~~l~~~~~~~~-~~~~s~~~~~~~~ 175 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNN--VSVDIINFGEIDDNTEKLTAFIDAVN-GKDGSHLVSVPPG 175 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcC--CeEEEEEeCCCCCCHHHHHHHHHHhc-CCCCceEEEeCCC
Confidence 88888888888777889999999999 99999987655333213444555542 2234677777654
No 281
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=32.64 E-value=1e+02 Score=29.13 Aligned_cols=24 Identities=0% Similarity=-0.096 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCeEEEEEeCCCCCC
Q 045281 20 VELGKLILTYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 20 l~La~~L~~~G~~h~Vt~~~~~~~~~ 45 (481)
.++|..++++| ++|.+++.....+
T Consensus 3 ~a~a~~~a~~g--~~vllv~~Dp~~~ 26 (284)
T TIGR00345 3 CATAIRLAEQG--KKVLLVSTDPAHS 26 (284)
T ss_pred HHHHHHHHHCC--CeEEEEECCCCCC
Confidence 47899999999 9999998765433
No 282
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=32.58 E-value=70 Score=20.65 Aligned_cols=25 Identities=4% Similarity=0.282 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHhcC-chHHHHHHHHHHH
Q 045281 420 SAAELEQRVSELMDS-EKGRAVKERVVEM 447 (481)
Q Consensus 420 ~~~~l~~av~~il~~-~~~~~~~~~a~~l 447 (481)
++++|..||..+..+ -+ +++.|+..
T Consensus 1 tee~l~~Ai~~v~~g~~S---~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMS---IRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS----HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 468999999999876 44 66655544
No 283
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=32.41 E-value=3.4e+02 Score=26.06 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=40.5
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.+.+|++|++. +.+++-+...|.+++. +.... ...+ ++ ..+.......++|+
T Consensus 138 tvgIvG~G~IG-------~~vA~~l~afG~~V~~-~~~~~-----------~~~~-~~--------~~~~~~~~l~e~l~ 189 (312)
T PRK15469 138 TIGILGAGVLG-------SKVAQSLQTWGFPLRC-WSRSR-----------KSWP-GV--------QSFAGREELSAFLS 189 (312)
T ss_pred EEEEECCCHHH-------HHHHHHHHHCCCEEEE-EeCCC-----------CCCC-Cc--------eeecccccHHHHHh
Confidence 38899999988 5677777778887643 22210 0000 00 00112334577899
Q ss_pred ccCcceEEeccCchhHHH
Q 045281 358 HESVGGFVTHCGWNSVLE 375 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~e 375 (481)
.+++ ++.|.-.+.-.+
T Consensus 190 ~aDv--vv~~lPlt~~T~ 205 (312)
T PRK15469 190 QTRV--LINLLPNTPETV 205 (312)
T ss_pred cCCE--EEECCCCCHHHH
Confidence 9999 998887665443
No 284
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.36 E-value=48 Score=32.19 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
|++||.|+-.|..| ..+|..|+++| |+|+++..
T Consensus 1 ~~mkI~IiG~G~mG-----~~~A~~L~~~G--~~V~~~~r 33 (341)
T PRK08229 1 MMARICVLGAGSIG-----CYLGGRLAAAG--ADVTLIGR 33 (341)
T ss_pred CCceEEEECCCHHH-----HHHHHHHHhcC--CcEEEEec
Confidence 67789999888877 46788899999 99999874
No 285
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.19 E-value=84 Score=25.61 Aligned_cols=38 Identities=16% Similarity=0.343 Sum_probs=28.6
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHh--CCCcEEEEEeC
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLER--SGVKFLWVVRA 315 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~--~~~~~iw~~~~ 315 (481)
.+|+++|||......+.+..+.+.+++ .+..+-|.+.+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 489999999987566678888888865 34577777643
No 286
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=31.99 E-value=92 Score=30.55 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=23.3
Q ss_pred ccCcceEEeccCchh---HHHHHhcCCcEEec
Q 045281 358 HESVGGFVTHCGWNS---VLEGVCAGVPMLAW 386 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs---~~eal~~GvP~v~~ 386 (481)
++++ +|++||+=| +..|...|+|.++.
T Consensus 91 kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 91 KPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred CCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 3666 999999987 89999999999874
No 287
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=31.86 E-value=2e+02 Score=24.56 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=27.7
Q ss_pred cchHHhhhccCcceEEeccCchhHH---HHHhcCCcEEeccc
Q 045281 350 APQVEVLNHESVGGFVTHCGWNSVL---EGVCAGVPMLAWPL 388 (481)
Q Consensus 350 vpq~~lL~~~~~~~~vtHgG~gs~~---eal~~GvP~v~~P~ 388 (481)
.+-..++-..+-..++--||.||.. |++.+++|+++++.
T Consensus 82 ~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 82 FARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred chHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 3455555544444667789999876 56889999999985
No 288
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=31.76 E-value=61 Score=28.12 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=20.7
Q ss_pred CccEEEECCCCch--hHHHHhhccCCCeEEEe
Q 045281 113 NLKAFVIDFFCSP--AFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 113 ~pD~vV~D~~~~~--~~~vA~~~lgIP~v~~~ 142 (481)
+||+||....... ..... +..|||++.+.
T Consensus 69 ~PDlii~~~~~~~~~~~~~l-~~~gIpvv~i~ 99 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKL-EQLGIPVLYVN 99 (186)
T ss_pred CCCEEEEecCCCchhHHHHH-HHcCCCEEEeC
Confidence 9999998653332 33456 78999998774
No 289
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=31.58 E-value=2.8e+02 Score=26.79 Aligned_cols=38 Identities=11% Similarity=0.058 Sum_probs=33.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
.|+++-.++.|-+.=+..||..|+.+| .+|.++.....
T Consensus 116 vi~lvGpnGsGKTTt~~kLA~~l~~~g--~~V~Li~~D~~ 153 (318)
T PRK10416 116 VILVVGVNGVGKTTTIGKLAHKYKAQG--KKVLLAAGDTF 153 (318)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcC--CeEEEEecCcc
Confidence 577777889999999999999999999 99999986543
No 290
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=31.42 E-value=79 Score=25.53 Aligned_cols=37 Identities=11% Similarity=-0.012 Sum_probs=23.9
Q ss_pred EEEEEcCCCcc---CHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 4 TIVLYTSPGRG---HLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 4 ~il~~~~~~~G---H~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+|+|+--|-.+ .-.-.++|+.+-++|| |+|.++++..
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RG--hev~~~~~~d 41 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRG--HEVFYYEPGD 41 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT---EEEEE-GGG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCC--CEEEEEEcCc
Confidence 36666555443 2344678999999999 9999998654
No 291
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=31.29 E-value=65 Score=28.24 Aligned_cols=36 Identities=11% Similarity=0.229 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+||++.-.|+.|= .-...+.+.|.++| ++|.++.+.
T Consensus 2 k~Ill~vtGsiaa-~~~~~li~~L~~~g--~~V~vv~T~ 37 (182)
T PRK07313 2 KNILLAVSGSIAA-YKAADLTSQLTKRG--YQVTVLMTK 37 (182)
T ss_pred CEEEEEEeChHHH-HHHHHHHHHHHHCC--CEEEEEECh
Confidence 3566655455554 45899999999999 999988865
No 292
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=30.92 E-value=1e+02 Score=30.81 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=32.3
Q ss_pred HHHHHhhHHHHHHHHHhhccCCccEEEECCCCchh----------HHHHhhccCCCeEEEec
Q 045281 92 ELGELNNPKLHETLITISKRSNLKAFVIDFFCSPA----------FQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 92 ~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~----------~~vA~~~lgIP~v~~~~ 143 (481)
+..++....+.+.++++ +||++|+-|-+-.+ ..+. +++|||.++-..
T Consensus 59 en~eea~~~i~~mv~k~----~pDv~iaGPaFNagrYG~acg~va~aV~-e~~~IP~vt~My 115 (431)
T TIGR01918 59 ENLEEAVARVLEMLKDK----EPDIFIAGPAFNAGRYGVACGEICKVVQ-DKLNVPAVTSMY 115 (431)
T ss_pred hCHHHHHHHHHHHHHhc----CCCEEEEcCccCCccHHHHHHHHHHHHH-HhhCCCeEEEec
Confidence 33445566777777776 99999999944321 1245 789999997653
No 293
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=30.84 E-value=1e+02 Score=30.82 Aligned_cols=47 Identities=19% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHhhHHHHHHHHHhhccCCccEEEECCCCchh----------HHHHhhccCCCeEEEec
Q 045281 92 ELGELNNPKLHETLITISKRSNLKAFVIDFFCSPA----------FQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 92 ~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~----------~~vA~~~lgIP~v~~~~ 143 (481)
+..++....+.+.++++ +||++|+-|-+-.+ ..+. +++|||.++-..
T Consensus 59 en~eea~~~i~~mv~k~----~pDv~iaGPaFNagrYG~acg~va~aV~-e~~~IP~vtaMy 115 (431)
T TIGR01917 59 ENLEEAKAKVLEMIKGA----NPDIFIAGPAFNAGRYGMAAGAITKAVQ-DELGIKAFTAMY 115 (431)
T ss_pred hCHHHHHHHHHHHHHhc----CCCEEEEcCccCCccHHHHHHHHHHHHH-HhhCCCeEEEec
Confidence 33445566777777776 99999999944321 1245 789999997653
No 294
>PRK06932 glycerate dehydrogenase; Provisional
Probab=30.79 E-value=2.2e+02 Score=27.36 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=58.2
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.+..|++|++. +++++.++..|.+++. +... . ... . ...+.+..++|+
T Consensus 149 tvgIiG~G~IG-------~~va~~l~~fg~~V~~-~~~~--~------------~~~---------~-~~~~~~l~ell~ 196 (314)
T PRK06932 149 TLGVFGKGCLG-------TEVGRLAQALGMKVLY-AEHK--G------------ASV---------C-REGYTPFEEVLK 196 (314)
T ss_pred EEEEECCCHHH-------HHHHHHHhcCCCEEEE-ECCC--c------------ccc---------c-ccccCCHHHHHH
Confidence 38899999988 5667777778887653 3211 0 000 0 113567899999
Q ss_pred ccCcceEEeccCchhHHHHHhcCCcEEecccccchhhHHHHHHHhhcee-eeeccCcccccccCHHHHHHHHH
Q 045281 358 HESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG-LAVTRSEEEERLVSAAELEQRVS 429 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G-~~l~~~~~~~~~~~~~~l~~av~ 429 (481)
.+++ ++-|+-.+.-. ....|+..+ +.++=| +.++.+ +.+.++.+.|.++++
T Consensus 197 ~sDi--v~l~~Plt~~T----------------~~li~~~~l-~~mk~ga~lIN~a--RG~~Vde~AL~~aL~ 248 (314)
T PRK06932 197 QADI--VTLHCPLTETT----------------QNLINAETL-ALMKPTAFLINTG--RGPLVDEQALLDALE 248 (314)
T ss_pred hCCE--EEEcCCCChHH----------------hcccCHHHH-HhCCCCeEEEECC--CccccCHHHHHHHHH
Confidence 9999 88887655332 233455555 244433 444444 445566666655553
No 295
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=30.65 E-value=1e+02 Score=30.32 Aligned_cols=93 Identities=18% Similarity=0.095 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCc-----hhhHhhhcCCCcEEecccch---HHhhhcc
Q 045281 288 GSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLP-----EGFLDRTKDRGLVVESWAPQ---VEVLNHE 359 (481)
Q Consensus 288 ~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~vpq---~~lL~~~ 359 (481)
+.+...-+..++++++..+.++...+..+.... .....+. .+-..+.+.-.+.+.+|+|| +.||-.|
T Consensus 190 F~Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~-----~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD~LLw~c 264 (374)
T PF10093_consen 190 FCYENAALASLLDAWAASPKPVHLLVPEGRALN-----SLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYDRLLWAC 264 (374)
T ss_pred EeCCchHHHHHHHHHhcCCCCeEEEecCCccHH-----HHHHHhccccccCccccccCCeEEEECCCCCHHHHHHHHHhC
Confidence 345667788899999988888776666542210 0100111 11111111123566789997 4599999
Q ss_pred CcceEEeccCchhHHHHHhcCCcEEeccc
Q 045281 360 SVGGFVTHCGWNSVLEGVCAGVPMLAWPL 388 (481)
Q Consensus 360 ~~~~~vtHgG~gs~~eal~~GvP~v~~P~ 388 (481)
++ -+-. |==|+.-|.-+|+|.|=-.+
T Consensus 265 D~--NfVR-GEDSfVRAqwAgkPFvWhIY 290 (374)
T PF10093_consen 265 DF--NFVR-GEDSFVRAQWAGKPFVWHIY 290 (374)
T ss_pred cc--ceEe-cchHHHHHHHhCCCceEecC
Confidence 98 3333 55699999999999985544
No 296
>PRK14098 glycogen synthase; Provisional
Probab=30.43 E-value=72 Score=32.94 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=29.0
Q ss_pred cEEEEEcC------CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 3 DTIVLYTS------PGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 3 ~~il~~~~------~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
++|++++. -+.|=-.-.-+|.++|+++| |+|.+++|..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g--~~v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEG--FEARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 47888765 23444455788999999999 9999999744
No 297
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.27 E-value=1e+02 Score=29.22 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=36.4
Q ss_pred hhccCcceEEeccCchhHHHHHh----cCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHH
Q 045281 356 LNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSEL 431 (481)
Q Consensus 356 L~~~~~~~~vtHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~i 431 (481)
...+++ +|+-||-||++.+++ .++|++.+-... +|. -. + ++++++.++++++
T Consensus 62 ~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G~------------lGF----Lt---~---~~~~~~~~~l~~i 117 (287)
T PRK14077 62 FKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAGH------------LGF----LT---D---ITVDEAEKFFQAF 117 (287)
T ss_pred ccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCCC------------ccc----CC---c---CCHHHHHHHHHHH
Confidence 345677 999999999997765 377888773210 111 12 2 5667777777777
Q ss_pred hcCc
Q 045281 432 MDSE 435 (481)
Q Consensus 432 l~~~ 435 (481)
++++
T Consensus 118 ~~g~ 121 (287)
T PRK14077 118 FQGE 121 (287)
T ss_pred HcCC
Confidence 7643
No 298
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=30.05 E-value=87 Score=31.25 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=40.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
++++++.. +.| +.|++++.+.+.++++..+|+++-........ .+++.++++....+.+++..+
T Consensus 262 ~~~vlIag-GtG-IaP~~s~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~eL~~l~~~~~~~~~~~~ 325 (399)
T PRK13289 262 TPVVLISG-GVG-ITPMLSMLETLAAQQPKRPVHFIHAARNGGVH-AFRDEVEALAARHPNLKAHTW 325 (399)
T ss_pred CcEEEEec-Ccc-HHHHHHHHHHHHhcCCCCCEEEEEEeCChhhc-hHHHHHHHHHHhCCCcEEEEE
Confidence 36777773 334 99999999999876544677775432222222 466666665444456776554
No 299
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=30.01 E-value=3.7e+02 Score=26.67 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=30.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+++.--|+.|-..=++.+|..+++.| ..|.+++.+
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~E 119 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGE 119 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC
Confidence 45555689999999999999999998 899998854
No 300
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.83 E-value=3.3e+02 Score=28.70 Aligned_cols=79 Identities=14% Similarity=0.124 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCcEEecccc--------hHHhhhccCcceEE
Q 045281 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAP--------QVEVLNHESVGGFV 365 (481)
Q Consensus 295 ~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vp--------q~~lL~~~~~~~~v 365 (481)
-+.+++.|++.|++.|+-+.++. -..+.+.+. .+++.++.--. ...-......++++
T Consensus 7 ~~~l~~~L~~~Gv~~vFgvpG~~--------------~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~ 72 (572)
T PRK08979 7 ASMIVRSLIDEGVKHIFGYPGGS--------------VLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVL 72 (572)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcc--------------hHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEE
Confidence 45688888899998888776641 012333221 12332221111 11111123455599
Q ss_pred eccCch------hHHHHHhcCCcEEecc
Q 045281 366 THCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 366 tHgG~g------s~~eal~~GvP~v~~P 387 (481)
+|.|-| .+.+|...++|+|++-
T Consensus 73 ~t~GpG~~n~l~gia~A~~~~~Pvl~i~ 100 (572)
T PRK08979 73 VTSGPGATNTITGIATAYMDSIPMVVLS 100 (572)
T ss_pred ECCCchHhHHHHHHHHHhhcCCCEEEEe
Confidence 998866 5779999999999984
No 301
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=29.59 E-value=1.2e+02 Score=28.88 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=36.9
Q ss_pred hccCcceEEeccCchhHHHHHhc----CCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHh
Q 045281 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~vtHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il 432 (481)
..+++ +|+-||-||++++++. ++|++.+-. -+ +|-. .+ .+.+++.+++++++
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~------------G~--lGFL--~~------~~~~~~~~~l~~~~ 117 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH------------GR--LGFI--TD------IPLDDMQETLPPML 117 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC------------CC--cccc--cc------CCHHHHHHHHHHHH
Confidence 34667 9999999999999773 678777632 11 1211 12 56677888888777
Q ss_pred cCc
Q 045281 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
+++
T Consensus 118 ~g~ 120 (291)
T PRK02155 118 AGN 120 (291)
T ss_pred cCC
Confidence 654
No 302
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=29.57 E-value=69 Score=28.75 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=30.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
=|++.-+|+.|-+..--.||++|.+++ |+|.-.+
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i--~~vi~l~ 36 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEI--WRVIHLE 36 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhh--hhccccc
Confidence 466777899999999999999999999 8887765
No 303
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=29.46 E-value=1.7e+02 Score=27.35 Aligned_cols=37 Identities=16% Similarity=0.395 Sum_probs=29.1
Q ss_pred cccchHHhhhccCcceEEeccC-chhHHHHHhcCCcEEec
Q 045281 348 SWAPQVEVLNHESVGGFVTHCG-WNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 348 ~~vpq~~lL~~~~~~~~vtHgG-~gs~~eal~~GvP~v~~ 386 (481)
++=|+-+.|..++. +|.-.. .|-+.||+..|+|+-+.
T Consensus 234 g~NPY~~~La~Ady--ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY--IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce--EEEecchhhhhHHHhccCCCeEEE
Confidence 34589999998887 665555 47888999999998765
No 304
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=29.45 E-value=1.2e+02 Score=26.15 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=23.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHHHHhCC
Q 045281 276 SRSVLLLCFGSLGSFSCKQLKEMAIGLERSG 306 (481)
Q Consensus 276 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~ 306 (481)
.+..+||++||......+.++..++.|...+
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~~ 36 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAAP 36 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhCC
Confidence 3448999999998666677777777777643
No 305
>PRK06270 homoserine dehydrogenase; Provisional
Probab=29.17 E-value=5.5e+02 Score=25.02 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=36.6
Q ss_pred chHHhhhccCcceEEe------ccC---chhHHHHHhcCCcEEe---cccccchhhHHHHHHHhhceeeeecc
Q 045281 351 PQVEVLNHESVGGFVT------HCG---WNSVLEGVCAGVPMLA---WPLYAEQKMIKAVVVEEMKVGLAVTR 411 (481)
Q Consensus 351 pq~~lL~~~~~~~~vt------HgG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~~v~~~~G~G~~l~~ 411 (481)
...++|...++.++|- |+| ..-+.++|.+|+++|+ -|+...-....... ++.|+.+....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A-~~~g~~~~~ea 151 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELA-KKNGVRFRYEA 151 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHH-HHcCCEEEEee
Confidence 5566776554444655 443 4456899999999999 58754333333333 45577776543
No 306
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=29.06 E-value=2.8e+02 Score=26.88 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=40.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHH-hCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLE-RSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~-~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
+..|++|++. +.+++-++ ..|.+++..-... +...... .++ .+++..++|.
T Consensus 148 vGIiG~G~IG-------~~va~~l~~~fgm~V~~~~~~~---------------~~~~~~~---~~~---~~~~l~ell~ 199 (323)
T PRK15409 148 LGIVGMGRIG-------MALAQRAHFGFNMPILYNARRH---------------HKEAEER---FNA---RYCDLDTLLQ 199 (323)
T ss_pred EEEEcccHHH-------HHHHHHHHhcCCCEEEEECCCC---------------chhhHHh---cCc---EecCHHHHHH
Confidence 8899999988 45666665 6777766432111 0110000 122 3567889999
Q ss_pred ccCcceEEeccCchhH
Q 045281 358 HESVGGFVTHCGWNSV 373 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~ 373 (481)
.+++ ++-|+-.+.-
T Consensus 200 ~sDv--v~lh~plt~~ 213 (323)
T PRK15409 200 ESDF--VCIILPLTDE 213 (323)
T ss_pred hCCE--EEEeCCCChH
Confidence 9999 9988876653
No 307
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=29.02 E-value=92 Score=27.78 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
.+|.+-..|+-|-+.-|+.=|++|.++| .+|.+...+
T Consensus 6 LkIflG~apGVGKTy~ML~ea~~l~~~G--~DVViG~ve 42 (211)
T PF02702_consen 6 LKIFLGAAPGVGKTYAMLQEAHRLKEQG--VDVVIGYVE 42 (211)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTT----EEEEE--
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHCC--CCEEEEEec
Confidence 4889999999999999999999999999 888886654
No 308
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=29.02 E-value=2.8e+02 Score=21.61 Aligned_cols=84 Identities=10% Similarity=0.170 Sum_probs=50.9
Q ss_pred cCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCCChHHHHHHH
Q 045281 14 GHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPVDLPALAYEL 93 (481)
Q Consensus 14 GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (481)
.+-.-++.+++.|.+.| .++ ++|.. ....+.. .|+.+..+... .+
T Consensus 10 ~~k~~~~~~~~~l~~~G--~~l-~aT~g--------T~~~l~~-----~gi~~~~v~~~-----~~-------------- 54 (110)
T cd01424 10 RDKPEAVEIAKRLAELG--FKL-VATEG--------TAKYLQE-----AGIPVEVVNKV-----SE-------------- 54 (110)
T ss_pred CcHhHHHHHHHHHHHCC--CEE-EEchH--------HHHHHHH-----cCCeEEEEeec-----CC--------------
Confidence 46667899999999999 776 34422 2223333 36776665322 10
Q ss_pred HHHhhHHHHHHHHHhhccCCccEEEECCCC-------chhHHHHhhccCCCeEE
Q 045281 94 GELNNPKLHETLITISKRSNLKAFVIDFFC-------SPAFQVSSSTLSIPTYY 140 (481)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~-------~~~~~vA~~~lgIP~v~ 140 (481)
..+.+.+.+++- ++|+||.-+-. ..-...| -..|||+++
T Consensus 55 ---~~~~i~~~i~~~----~id~vIn~~~~~~~~~~~~~iRR~A-v~~~ipl~T 100 (110)
T cd01424 55 ---GRPNIVDLIKNG----EIQLVINTPSGKRAIRDGFSIRRAA-LEYKVPYFT 100 (110)
T ss_pred ---CchhHHHHHHcC----CeEEEEECCCCCccCccHHHHHHHH-HHhCCCEEe
Confidence 123445555554 89999985421 2233467 889999994
No 309
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=28.48 E-value=83 Score=31.82 Aligned_cols=28 Identities=11% Similarity=0.080 Sum_probs=22.2
Q ss_pred CCccEEEECCCCchhHHHHhhccCCCeEEEec
Q 045281 112 SNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 112 ~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~ 143 (481)
.+||++|.+.. ...+| +++|||++.+..
T Consensus 369 ~~pdliig~~~---~~~~a-~~~gip~~~~~~ 396 (430)
T cd01981 369 TEPELIFGTQM---ERHIG-KRLDIPCAVISA 396 (430)
T ss_pred hCCCEEEecch---hhHHH-HHcCCCEEEEeC
Confidence 38999999973 55678 999999986643
No 310
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=28.30 E-value=2.5e+02 Score=29.62 Aligned_cols=91 Identities=11% Similarity=0.048 Sum_probs=51.6
Q ss_pred ecCCCCCCCH-HHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCcEEecccc-hHHh----
Q 045281 283 CFGSLGSFSC-KQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAP-QVEV---- 355 (481)
Q Consensus 283 s~GS~~~~~~-~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~vp-q~~l---- 355 (481)
|-||...... ...+.+++.|++.|.+.|.-+.++.. ..+.+.+ ..+++..+.-.. +...
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~--------------~~l~dal~~~~~i~~i~~~hE~~A~~~Ad 68 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAI--------------LPLYDALSQSTQIRHILARHEQGAGFIAQ 68 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCccc--------------HHHHHHHhccCCceEEEeccHHHHHHHHH
Confidence 3455543333 34667999999999998888766410 1222222 122333222111 1111
Q ss_pred ---hhccCcceEEeccCch------hHHHHHhcCCcEEecc
Q 045281 356 ---LNHESVGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 356 ---L~~~~~~~~vtHgG~g------s~~eal~~GvP~v~~P 387 (481)
.-+...+++++|.|-| .+.+|...++|+|++-
T Consensus 69 gyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 69 GMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 1112334488887755 6789999999999984
No 311
>PRK11269 glyoxylate carboligase; Provisional
Probab=28.24 E-value=3.2e+02 Score=28.96 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCcEEecccc-h----H-H--hhhc-cCcceE
Q 045281 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAP-Q----V-E--VLNH-ESVGGF 364 (481)
Q Consensus 295 ~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~vp-q----~-~--lL~~-~~~~~~ 364 (481)
.+.+++.|++.|.+.|+-+.+... ..+.+.+ ..+++..+.-.. + + + -... ...+++
T Consensus 7 ~~~l~~~L~~~Gv~~vFg~pG~~~--------------~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~ 72 (591)
T PRK11269 7 VDAAVLVLEKEGVTTAFGVPGAAI--------------NPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVC 72 (591)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccc--------------HHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEE
Confidence 456888888889888887765410 1222222 112322222111 1 1 0 1111 234557
Q ss_pred EeccC------chhHHHHHhcCCcEEecc
Q 045281 365 VTHCG------WNSVLEGVCAGVPMLAWP 387 (481)
Q Consensus 365 vtHgG------~gs~~eal~~GvP~v~~P 387 (481)
+.|.| .+.+.+|...++|+|++.
T Consensus 73 ~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 73 IGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred EECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 77777 568889999999999983
No 312
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=28.21 E-value=81 Score=32.88 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=21.6
Q ss_pred CCccEEEECCCCchhHHHHhhccCCCeEEEe
Q 045281 112 SNLKAFVIDFFCSPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 112 ~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~ 142 (481)
.+||+||.+.+ ...+| +++|||++.+.
T Consensus 361 ~~PdliiG~~~---er~~a-~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQM---ERHSA-KRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcch---HHHHH-HHcCCCEEEec
Confidence 38999998763 66688 99999998654
No 313
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=28.15 E-value=4.6e+02 Score=23.84 Aligned_cols=153 Identities=13% Similarity=0.106 Sum_probs=79.5
Q ss_pred ccccccCCCCCcEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEE
Q 045281 267 SLSWLDSKPSRSVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVV 346 (481)
Q Consensus 267 l~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 346 (481)
+.-||+-.. +.++.|+-|... .+. +..|-..+..+.++... +.+++.+-....++.+
T Consensus 17 ~pi~l~~~~-~~VLVVGGG~VA------~RK-~~~Ll~~gA~VtVVap~---------------i~~el~~l~~~~~i~~ 73 (223)
T PRK05562 17 MFISLLSNK-IKVLIIGGGKAA------FIK-GKTFLKKGCYVYILSKK---------------FSKEFLDLKKYGNLKL 73 (223)
T ss_pred eeeEEECCC-CEEEEECCCHHH------HHH-HHHHHhCCCEEEEEcCC---------------CCHHHHHHHhCCCEEE
Confidence 333555433 237777765544 122 34444567777666543 1223332222233433
Q ss_pred ecccchHHhhhccCcceEEeccCchhHHHHHh-----cCCcEEecccccchh-----hHHHHHHHhhceeeeeccCcccc
Q 045281 347 ESWAPQVEVLNHESVGGFVTHCGWNSVLEGVC-----AGVPMLAWPLYAEQK-----MIKAVVVEEMKVGLAVTRSEEEE 416 (481)
Q Consensus 347 ~~~vpq~~lL~~~~~~~~vtHgG~gs~~eal~-----~GvP~v~~P~~~DQ~-----~na~~v~~~~G~G~~l~~~~~~~ 416 (481)
..---+..-|..+.+ +|.--+--.+.+.++ .|++..++ |++ ..-+.+ ++-++-+.+.+++ .+
T Consensus 74 ~~r~~~~~dl~g~~L--ViaATdD~~vN~~I~~~a~~~~~lvn~v----d~p~~~dFi~PAiv-~rg~l~IaIST~G-~s 145 (223)
T PRK05562 74 IKGNYDKEFIKDKHL--IVIATDDEKLNNKIRKHCDRLYKLYIDC----SDYKKGLCIIPYQR-STKNFVFALNTKG-GS 145 (223)
T ss_pred EeCCCChHHhCCCcE--EEECCCCHHHHHHHHHHHHHcCCeEEEc----CCcccCeEEeeeEE-ecCCEEEEEECCC-cC
Confidence 322123344566666 888877766666543 35665544 333 333334 3323555555431 11
Q ss_pred cccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 045281 417 RLVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAA 453 (481)
Q Consensus 417 ~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~ 453 (481)
+ .-...|++.+++++ ++...+-+.+.++++.+++
T Consensus 146 P-~lar~lR~~ie~~l--~~~~~l~~~l~~~R~~vk~ 179 (223)
T PRK05562 146 P-KTSVFIGEKVKNFL--KKYDDFIEYVTKIRNKAKK 179 (223)
T ss_pred c-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 2 23356889999888 3345677777777777764
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.07 E-value=2.7e+02 Score=25.35 Aligned_cols=38 Identities=13% Similarity=-0.051 Sum_probs=31.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
-+++.--|+.|-..=.++++.+-+++| -.+.|++.+..
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~g--e~~lyvs~ee~ 60 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMG--EPGIYVALEEH 60 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcC--CcEEEEEeeCC
Confidence 356677789999999999888877889 99999997654
No 315
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=28.05 E-value=3.8e+02 Score=27.35 Aligned_cols=35 Identities=11% Similarity=0.204 Sum_probs=28.9
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 4 TIVLYT-SPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 4 ~il~~~-~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
++++.. -...|-+.=...|++.|+++| ++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G--~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRG--LRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCC--CCcceeec
Confidence 555553 456889999999999999999 99988865
No 316
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=28.05 E-value=82 Score=30.30 Aligned_cols=93 Identities=15% Similarity=0.044 Sum_probs=56.5
Q ss_pred EEE-EecCCCC--CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEec--ccch-
Q 045281 279 VLL-LCFGSLG--SFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVES--WAPQ- 352 (481)
Q Consensus 279 ~v~-vs~GS~~--~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~vpq- 352 (481)
.|. +..||.. ..+.+.+.++++.+...+.++++..++.. +...-+.+.+.. .++.+.+ .+.+
T Consensus 180 ~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~----------e~~~~~~i~~~~--~~~~l~g~~sL~el 247 (322)
T PRK10964 180 YLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH----------EEQRAKRLAEGF--PYVEVLPKLSLEQV 247 (322)
T ss_pred eEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH----------HHHHHHHHHccC--CcceecCCCCHHHH
Confidence 444 4444433 46788889999988776777655444320 111111222111 1222222 2334
Q ss_pred HHhhhccCcceEEeccCchhHHHHHhcCCcEEec
Q 045281 353 VEVLNHESVGGFVTHCGWNSVLEGVCAGVPMLAW 386 (481)
Q Consensus 353 ~~lL~~~~~~~~vtHgG~gs~~eal~~GvP~v~~ 386 (481)
..++.++++ +|+. -.|.++=|.+.|+|.|++
T Consensus 248 aali~~a~l--~I~n-DSGp~HlA~A~g~p~val 278 (322)
T PRK10964 248 ARVLAGAKA--VVSV-DTGLSHLTAALDRPNITL 278 (322)
T ss_pred HHHHHhCCE--EEec-CCcHHHHHHHhCCCEEEE
Confidence 568899999 9997 478999999999999987
No 317
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=27.92 E-value=1.7e+02 Score=25.45 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=25.2
Q ss_pred hHHhhhccCcceEEeccCchhHHHHHh---------cCCcEEecc
Q 045281 352 QVEVLNHESVGGFVTHCGWNSVLEGVC---------AGVPMLAWP 387 (481)
Q Consensus 352 q~~lL~~~~~~~~vtHgG~gs~~eal~---------~GvP~v~~P 387 (481)
-..+|-..+-..++--||.||.-|.+. +.+|++++=
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 444555544446777899999988743 589999874
No 318
>PRK06914 short chain dehydrogenase; Provisional
Probab=27.88 E-value=92 Score=29.02 Aligned_cols=35 Identities=9% Similarity=0.027 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
|+.+.++++ |+.|.+ -..|++.|+++| ++|+.++.
T Consensus 1 ~~~k~~lIt-Gasg~i--G~~la~~l~~~G--~~V~~~~r 35 (280)
T PRK06914 1 MNKKIAIVT-GASSGF--GLLTTLELAKKG--YLVIATMR 35 (280)
T ss_pred CCCCEEEEE-CCCchH--HHHHHHHHHhCC--CEEEEEeC
Confidence 565666666 566655 678889999999 99988763
No 319
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.73 E-value=1.2e+02 Score=29.19 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=38.1
Q ss_pred hccCcceEEeccCchhHHHHHhc----CCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHh
Q 045281 357 NHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~vtHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il 432 (481)
..+++ +|+=||=||++.+.+. ++|++.+-. | .+..-. + ++++++.+++++++
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~---------------G-~lGFLt---~---~~~~~~~~~l~~l~ 122 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT---------------G-HLGFLT---E---AYLNQLDEAIDQVL 122 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC---------------C-CCcccc---c---CCHHHHHHHHHHHH
Confidence 34666 9999999999998764 788888732 1 011122 2 56788888888887
Q ss_pred cCc
Q 045281 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
+++
T Consensus 123 ~g~ 125 (305)
T PRK02649 123 AGQ 125 (305)
T ss_pred cCC
Confidence 654
No 320
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=27.53 E-value=26 Score=31.30 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=24.0
Q ss_pred CccEEE-ECCCCch-hHHHHhhccCCCeEEEecccH
Q 045281 113 NLKAFV-IDFFCSP-AFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 113 ~pD~vV-~D~~~~~-~~~vA~~~lgIP~v~~~~~~~ 146 (481)
.||+|| .|+..-- +..=| .++|||.|.++-+-+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA-~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEA-IEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHH-HHhCCCEEEEEeCCC
Confidence 677766 7774433 55677 999999999877653
No 321
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=27.49 E-value=1.2e+02 Score=25.33 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=29.3
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~ 315 (481)
.+|+|++||.-....+.++++++.+. .+.+++++...
T Consensus 52 d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 52 KTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 39999999998777888999998885 35777776543
No 322
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=27.47 E-value=92 Score=24.26 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=49.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
+|+++-.+++-| +||+.|.+.- ..+-.|+.+..+ . +.+. -+.+.+. ..
T Consensus 2 kVLviGsGgREH-----Aia~~l~~s~-~v~~v~~aPGN~---G------~~~~------~~~~~~~---~~-------- 49 (100)
T PF02844_consen 2 KVLVIGSGGREH-----AIAWKLSQSP-SVEEVYVAPGNP---G------TAEL------GKNVPID---IT-------- 49 (100)
T ss_dssp EEEEEESSHHHH-----HHHHHHTTCT-TEEEEEEEE--T---T------GGGT------SEEE-S----TT--------
T ss_pred EEEEECCCHHHH-----HHHHHHhcCC-CCCEEEEeCCCH---H------HHhh------ceecCCC---CC--------
Confidence 599999999988 5888898863 244445544322 0 1110 1111111 00
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECC---CCchhHHHHhhccCCCeE
Q 045281 84 VDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDF---FCSPAFQVSSSTLSIPTY 139 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~---~~~~~~~vA~~~lgIP~v 139 (481)
+ ...+.++.++. ++|+||..+ +.....+.. +..|||++
T Consensus 50 -d------------~~~l~~~a~~~----~idlvvvGPE~pL~~Gl~D~l-~~~gi~vf 90 (100)
T PF02844_consen 50 -D------------PEELADFAKEN----KIDLVVVGPEAPLVAGLADAL-RAAGIPVF 90 (100)
T ss_dssp --------------HHHHHHHHHHT----TESEEEESSHHHHHTTHHHHH-HHTT-CEE
T ss_pred -C------------HHHHHHHHHHc----CCCEEEECChHHHHHHHHHHH-HHCCCcEE
Confidence 1 12333444444 999999988 555567788 89999987
No 323
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=27.41 E-value=3e+02 Score=26.63 Aligned_cols=103 Identities=19% Similarity=0.238 Sum_probs=66.7
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.+-.|++|.+. +.+++-++..|.+++-.-... +..... -.-........++|+
T Consensus 144 TvGIiG~G~IG-------~~va~~l~afgm~v~~~d~~~---------------~~~~~~-----~~~~~~~~~Ld~lL~ 196 (324)
T COG0111 144 TVGIIGLGRIG-------RAVAKRLKAFGMKVIGYDPYS---------------PRERAG-----VDGVVGVDSLDELLA 196 (324)
T ss_pred EEEEECCCHHH-------HHHHHHHHhCCCeEEEECCCC---------------chhhhc-----cccceecccHHHHHh
Confidence 38889998887 567777777888765432211 010000 011224456889999
Q ss_pred ccCcceEEeccCchhHHHHHhcCCcEEecccccc--hhhHHHHHHHhhcee-eeeccCcccccccCHHHHHHHHHH
Q 045281 358 HESVGGFVTHCGWNSVLEGVCAGVPMLAWPLYAE--QKMIKAVVVEEMKVG-LAVTRSEEEERLVSAAELEQRVSE 430 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~~eal~~GvP~v~~P~~~D--Q~~na~~v~~~~G~G-~~l~~~~~~~~~~~~~~l~~av~~ 430 (481)
.+|+ ++.| +|...| ...|+.++ +.+.=| +.++.+ +.+.++.+.|.+|+++
T Consensus 197 ~sDi--v~lh------------------~PlT~eT~g~i~~~~~-a~MK~gailIN~a--RG~vVde~aL~~AL~~ 249 (324)
T COG0111 197 EADI--LTLH------------------LPLTPETRGLINAEEL-AKMKPGAILINAA--RGGVVDEDALLAALDS 249 (324)
T ss_pred hCCE--EEEc------------------CCCCcchhcccCHHHH-hhCCCCeEEEECC--CcceecHHHHHHHHHc
Confidence 9999 8877 466443 55677777 355433 777777 7788999999888865
No 324
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=27.31 E-value=2.4e+02 Score=28.57 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
|.++|+++-.+++.| +|++.|++.| ++|.++.
T Consensus 1 ~~~kVLvlG~G~re~-----al~~~l~~~g--~~v~~~~ 32 (435)
T PRK06395 1 MTMKVMLVGSGGRED-----AIARAIKRSG--AILFSVI 32 (435)
T ss_pred CceEEEEECCcHHHH-----HHHHHHHhCC--CeEEEEE
Confidence 778999998888877 5788899998 7776653
No 325
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=27.18 E-value=27 Score=31.00 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=24.1
Q ss_pred CccEEE-ECCCCch-hHHHHhhccCCCeEEEecccH
Q 045281 113 NLKAFV-IDFFCSP-AFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 113 ~pD~vV-~D~~~~~-~~~vA~~~lgIP~v~~~~~~~ 146 (481)
.||+|| .|+..-- +..=| .++|||.|.++-+-+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA-~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEA-SEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHH-HHcCCCEEEEeeCCC
Confidence 577765 7874433 56677 999999999877653
No 326
>CHL00067 rps2 ribosomal protein S2
Probab=27.07 E-value=52 Score=30.11 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=24.9
Q ss_pred CCccEEE-ECCCC-chhHHHHhhccCCCeEEEecccHH
Q 045281 112 SNLKAFV-IDFFC-SPAFQVSSSTLSIPTYYYFTSGGS 147 (481)
Q Consensus 112 ~~pD~vV-~D~~~-~~~~~vA~~~lgIP~v~~~~~~~~ 147 (481)
..||+|| .|+-. ..+..=| .++|||.|.++-+.+-
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea-~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALREC-RKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHH-HHcCCCEEEEEeCCCC
Confidence 4688876 56633 3466677 9999999998776543
No 327
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=27.02 E-value=1.4e+02 Score=23.94 Aligned_cols=39 Identities=21% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCccCHHHHH---HHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMV---ELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l---~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|++++++++....|-.+-++ .|.++-.++| |++.+=+..
T Consensus 1 ~~mkivaVtacp~GiAht~lAAeaL~kAA~~~G--~~i~VE~qg 42 (114)
T PRK10427 1 MMAYLVAVTACVSGVAHTYMAAERLEKLCQLEK--WGVKIETQG 42 (114)
T ss_pred CCceEEEEeeCCCcHHHHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 55679999999999998887 5777778899 999987744
No 328
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=26.98 E-value=1.2e+02 Score=24.80 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=23.0
Q ss_pred hHHhhhccCcceEEeccCchhHHHHHh---------cCC-cEEeccc
Q 045281 352 QVEVLNHESVGGFVTHCGWNSVLEGVC---------AGV-PMLAWPL 388 (481)
Q Consensus 352 q~~lL~~~~~~~~vtHgG~gs~~eal~---------~Gv-P~v~~P~ 388 (481)
-..+|-..+-..++--||.||..|... +.. |++.+=.
T Consensus 46 Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~ 92 (133)
T PF03641_consen 46 RKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNI 92 (133)
T ss_dssp HHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEEC
T ss_pred HHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCC
Confidence 344444444446788999999988743 234 9888763
No 329
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=26.96 E-value=90 Score=31.59 Aligned_cols=34 Identities=9% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEE
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYY 141 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~ 141 (481)
.+.+++++. +||++|.+.. ...+| +++|||++.+
T Consensus 363 e~~~~l~~~----~~dliiG~s~---~~~~a-~~~~ip~~~~ 396 (429)
T cd03466 363 DIESYAKEL----KIDVLIGNSY---GRRIA-EKLGIPLIRI 396 (429)
T ss_pred HHHHHHHhc----CCCEEEECch---hHHHH-HHcCCCEEEe
Confidence 344444444 8999999974 56788 9999999854
No 330
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=26.91 E-value=3.9e+02 Score=26.17 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=58.8
Q ss_pred HHHHHHHhCC--CcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEe------cc
Q 045281 297 EMAIGLERSG--VKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVT------HC 368 (481)
Q Consensus 297 ~~~~al~~~~--~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vt------Hg 368 (481)
..+.++...+ ..++.++..+. +. ...+.+++. + .-|-...+++...++.++.+ +-
T Consensus 16 ~h~~al~~~~~~~eLvaV~d~~~--------er----A~~~A~~~g---i--~~y~~~eell~d~Di~~V~ipt~~P~~~ 78 (343)
T TIGR01761 16 FYLAAFAAAPERFELAGILAQGS--------ER----SRALAHRLG---V--PLYCEVEELPDDIDIACVVVRSAIVGGQ 78 (343)
T ss_pred HHHHHHHhCCCCcEEEEEEcCCH--------HH----HHHHHHHhC---C--CccCCHHHHhcCCCEEEEEeCCCCCCcc
Confidence 4666666643 66777665431 00 123333332 2 24677888888888877764 23
Q ss_pred CchhHHHHHhcCCcEEe-cccccchhhHHHHHHHhhceeeee
Q 045281 369 GWNSVLEGVCAGVPMLA-WPLYAEQKMIKAVVVEEMKVGLAV 409 (481)
Q Consensus 369 G~gs~~eal~~GvP~v~-~P~~~DQ~~na~~v~~~~G~G~~l 409 (481)
+.--+.++|.+|+.++| -|+..++-.-...++++.|+=+.+
T Consensus 79 H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 79 GSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred HHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 35677889999999887 687765555555555555555554
No 331
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=26.88 E-value=75 Score=33.05 Aligned_cols=28 Identities=11% Similarity=-0.063 Sum_probs=22.4
Q ss_pred CCccEEEECCCCchhHHHHhhccCCCeEEEec
Q 045281 112 SNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFT 143 (481)
Q Consensus 112 ~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~ 143 (481)
.+||+||.+. ....+| +++|||++.+..
T Consensus 363 ~~pdliiG~~---~er~~a-~~lgip~~~i~~ 390 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSA-KRLDIPCGVISA 390 (511)
T ss_pred cCCCEEEECh---HHHHHH-HHcCCCEEEecC
Confidence 4899999986 366788 999999986543
No 332
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=26.85 E-value=4.4e+02 Score=23.17 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=34.4
Q ss_pred cEEEEEcC---CC-ccCH-HHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCC
Q 045281 3 DTIVLYTS---PG-RGHL-NSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPP 72 (481)
Q Consensus 3 ~~il~~~~---~~-~GH~-~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~ 72 (481)
+||.++-. |+ +|=+ .-.-.|+..|.++| |+|++++........ ...-.|++...++.+
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g--~~v~Vyc~~~~~~~~----------~~~y~gv~l~~i~~~ 64 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKG--IDVTVYCRSDYYPYK----------EFEYNGVRLVYIPAP 64 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCC--ceEEEEEccCCCCCC----------CcccCCeEEEEeCCC
Confidence 36666543 22 3333 34456888888899 999999865432211 112357888777644
No 333
>PRK08051 fre FMN reductase; Validated
Probab=26.83 E-value=74 Score=28.94 Aligned_cols=64 Identities=13% Similarity=0.076 Sum_probs=39.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
+++++++ +..-+.|++.+++++.+.+++.+|.++-........ .+...+++.....++++++.+
T Consensus 103 ~~~vlia--gG~GiaP~~~~l~~~~~~~~~~~v~l~~g~r~~~~~-~~~~el~~l~~~~~~~~~~~~ 166 (232)
T PRK08051 103 RPLLLIA--GGTGFSYARSILLTALAQGPNRPITLYWGGREEDHL-YDLDELEALALKHPNLHFVPV 166 (232)
T ss_pred CcEEEEe--cCcCcchHHHHHHHHHHhCCCCcEEEEEEeccHHHh-hhhHHHHHHHHHCCCcEEEEE
Confidence 3677777 334479999999999988755666654322222222 455555555444467777664
No 334
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.76 E-value=1.4e+02 Score=28.50 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=39.5
Q ss_pred HhhhccCcceEEeccCchhHHHHHh----cCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHH
Q 045281 354 EVLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVS 429 (481)
Q Consensus 354 ~lL~~~~~~~~vtHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~ 429 (481)
.+...+++ +|+=||=||++.+++ .++|++.+-... +| .-. + ++++++.++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G~--------------lG--FLt---~---~~~~~~~~~l~ 115 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTGR--------------LG--FLA---T---VSKEEIEETID 115 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecCC--------------CC--ccc---c---cCHHHHHHHHH
Confidence 33345677 999999999998877 378888874311 11 112 2 56788888888
Q ss_pred HHhcCc
Q 045281 430 ELMDSE 435 (481)
Q Consensus 430 ~il~~~ 435 (481)
+++++.
T Consensus 116 ~i~~g~ 121 (292)
T PRK01911 116 ELLNGD 121 (292)
T ss_pred HHHcCC
Confidence 888654
No 335
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=26.74 E-value=72 Score=29.03 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=20.6
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEEeCCCCCC
Q 045281 15 HLNSMVELGKLILTYHPCFSIDIIIPTAPFV 45 (481)
Q Consensus 15 H~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~ 45 (481)
|..-|...|.+|.++| ++|.++......+
T Consensus 47 ~~saMRhfa~~L~~~G--~~V~Y~~~~~~~~ 75 (224)
T PF04244_consen 47 FFSAMRHFADELRAKG--FRVHYIELDDPEN 75 (224)
T ss_dssp HHHHHHHHHHHHHHTT----EEEE-TT-TT-
T ss_pred HHHHHHHHHHHHHhCC--CEEEEEeCCCccc
Confidence 6778999999999999 9999998654433
No 336
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.53 E-value=3.6e+02 Score=28.42 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcC-CCcEEecccc-h-------HHhhhccCcceEE
Q 045281 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKD-RGLVVESWAP-Q-------VEVLNHESVGGFV 365 (481)
Q Consensus 295 ~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~vp-q-------~~lL~~~~~~~~v 365 (481)
.+.+++.|++.|.+.|.-+.++. ...+.+.+.. +++.++.-.. + ..-......++++
T Consensus 7 a~~l~~~L~~~GV~~vFg~pG~~--------------~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~ 72 (574)
T PRK06882 7 AEMVVQSLRDEGVEYVFGYPGGS--------------VLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVL 72 (574)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcc--------------hHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEE
Confidence 45688888888888887776541 0122222211 2332222111 1 0111122355599
Q ss_pred eccCch------hHHHHHhcCCcEEecc
Q 045281 366 THCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 366 tHgG~g------s~~eal~~GvP~v~~P 387 (481)
+|.|-| .+.+|...++|+|++-
T Consensus 73 ~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 73 VTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred ECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 998866 5679999999999983
No 337
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=26.04 E-value=89 Score=32.51 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEe
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~ 142 (481)
.+++.+++. +||+||.+. +...+| +++|||++.++
T Consensus 365 ei~~~I~~~----~pdliiGs~---~er~ia-~~lgiP~~~is 399 (513)
T CHL00076 365 EVGDMIARV----EPSAIFGTQ---MERHIG-KRLDIPCGVIS 399 (513)
T ss_pred HHHHHHHhc----CCCEEEECc---hhhHHH-HHhCCCEEEee
Confidence 344555554 899999997 356678 99999998654
No 338
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=25.93 E-value=63 Score=29.18 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=29.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCCeEEEEEeCCCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTY-HPCFSIDIIIPTAP 43 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~-G~~h~Vt~~~~~~~ 43 (481)
-+++.--|+.|-..=.++++.+-+++ | ..|.+++...+
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~ 59 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEP 59 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCC
Confidence 46677779999999999999888887 9 99999997654
No 339
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=25.90 E-value=54 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCccEEE-ECCC-CchhHHHHhhccCCCeEEEecccH
Q 045281 112 SNLKAFV-IDFF-CSPAFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 112 ~~pD~vV-~D~~-~~~~~~vA~~~lgIP~v~~~~~~~ 146 (481)
..||+|| .|+. -..+..=| .++|||.|.+.-+.+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea-~kl~IPiIaivDTn~ 191 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEA-RKLGIPVVAIVDTNC 191 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHH-HHhCCCEEEEeeCCC
Confidence 4688876 6763 33456677 999999999876653
No 340
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=25.83 E-value=4.4e+02 Score=22.86 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=29.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
.-|.+++..+.|-+.-.+.+|-+.+.+| ++|.++
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g--~~v~iv 39 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHG--KKVGVI 39 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCC--CeEEEE
Confidence 3577888899999999999999999999 999554
No 341
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=25.79 E-value=98 Score=27.22 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~-~G~~h~Vt~~~~~ 41 (481)
|| ||++.-.|+.| ..=...|.++|.+ .| |+|.++.+.
T Consensus 1 ~k-~IllgVTGsia-a~ka~~l~~~L~k~~g--~~V~vv~T~ 38 (185)
T PRK06029 1 MK-RLIVGISGASG-AIYGVRLLQVLRDVGE--IETHLVISQ 38 (185)
T ss_pred CC-EEEEEEECHHH-HHHHHHHHHHHHhhcC--CeEEEEECH
Confidence 54 55555546555 7779999999999 59 999999965
No 342
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=25.72 E-value=87 Score=31.62 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=26.8
Q ss_pred HHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEe
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYF 142 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~ 142 (481)
.+.+.+++. +||++|.... ...+| +++|||++.+.
T Consensus 360 e~~~~i~~~----~pDliig~~~---~~~~a-~k~giP~~~~~ 394 (421)
T cd01976 360 ELEEFVKRL----KPDLIGSGIK---EKYVF-QKMGIPFRQMH 394 (421)
T ss_pred HHHHHHHHh----CCCEEEecCc---chhhh-hhcCCCeEeCC
Confidence 445666665 9999999875 66688 99999998553
No 343
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=25.50 E-value=3e+02 Score=22.03 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=15.9
Q ss_pred HHHhhHHHHHHHHHhhccCCccEEEEC
Q 045281 94 GELNNPKLHETLITISKRSNLKAFVID 120 (481)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~pD~vV~D 120 (481)
.......+.++++++ +||+|+.-
T Consensus 85 ~~~~~~~l~~~i~~~----~p~~V~t~ 107 (128)
T PF02585_consen 85 WEELVRDLEDLIREF----RPDVVFTP 107 (128)
T ss_dssp HHHHHHHHHHHHHHH-----ESEEEEE
T ss_pred HHHHHHHHHHHHHHc----CCCEEEEC
Confidence 344556777888887 89998864
No 344
>PRK05858 hypothetical protein; Provisional
Probab=25.49 E-value=4.7e+02 Score=27.37 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=21.4
Q ss_pred ceEEeccCch------hHHHHHhcCCcEEecc
Q 045281 362 GGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 362 ~~~vtHgG~g------s~~eal~~GvP~v~~P 387 (481)
++++.|.|-| .+.+|...++|+|++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 4488888755 7789999999999985
No 345
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=25.31 E-value=91 Score=29.40 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=38.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-CeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHP-CFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~-~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
+++++++ ++.| +.|++++++.+.+.+. ..+|+++-.....+.. .+.+.++++....++++++..
T Consensus 151 ~~~vlIA-gGtG-ItP~~s~l~~~~~~~~~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~~~~~~~~ 215 (283)
T cd06188 151 REMVFIG-GGAG-MAPLRSHIFHLLKTLKSKRKISFWYGARSLKEL-FYQEEFEALEKEFPNFKYHPV 215 (283)
T ss_pred CcEEEEE-eccc-HhHHHHHHHHHHhcCCCCceEEEEEecCCHHHh-hHHHHHHHHHHHCCCeEEEEE
Confidence 4677877 4444 9999999999876542 1467765432222222 455666665444567776543
No 346
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=25.27 E-value=3.5e+02 Score=25.78 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=28.6
Q ss_pred EEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 045281 6 VLYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 6 l~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
+++..++.|++.-.+.|+..|.+.| .++.+.+
T Consensus 1 Lv~g~GGGGDvv~a~~l~~~l~~~G--~~~~lg~ 32 (297)
T PF06626_consen 1 LVIGIGGGGDVVSALPLAFALRKLG--KEVVLGS 32 (297)
T ss_pred CEEEecCcHHHHHHHHHHHHHHhcC--CceEEEE
Confidence 3567799999999999999999999 8888876
No 347
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=25.25 E-value=1.3e+02 Score=23.78 Aligned_cols=36 Identities=11% Similarity=-0.084 Sum_probs=31.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+++..+.++..|......++..|.++| ++|.+....
T Consensus 1 ~~l~~~~~~~~h~lg~~~~~~~l~~~G--~~v~~l~~~ 36 (125)
T cd02065 1 KVLGATVGGDVHDIGKNIVAIALRDNG--FEVIDLGVD 36 (125)
T ss_pred CEEEEEcCCchhhHHHHHHHHHHHHCC--CEEEEcCCC
Confidence 367778899999999999999999999 999998643
No 348
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.09 E-value=3.6e+02 Score=23.12 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=49.2
Q ss_pred hhHHHHHhcCCcEEecc-cccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Q 045281 371 NSVLEGVCAGVPMLAWP-LYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELMDSEKGRAVKERVVEMKE 449 (481)
Q Consensus 371 gs~~eal~~GvP~v~~P-~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~ 449 (481)
-|+.|--.+|.=.+.== +.-=+..|++.. ++.|.=-.+.-. . .+.++|.++..+=|.|++..+++....++.+
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~-~rFgfPfI~aVk--g---~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~r 161 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYV-ERFGFPFIIAVK--G---NTKDTILAAFERRLDNDREQEFATALAEIER 161 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHH-HhcCCceEEeec--C---CCHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35666666665443210 011256788999 577876444432 2 6899999999999988876667777777666
Q ss_pred HHH
Q 045281 450 AAA 452 (481)
Q Consensus 450 ~~~ 452 (481)
+++
T Consensus 162 IA~ 164 (176)
T COG3195 162 IAL 164 (176)
T ss_pred HHH
Confidence 654
No 349
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=24.96 E-value=4.1e+02 Score=27.93 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCcEEecccch-H-------HhhhccCcceEEe
Q 045281 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAPQ-V-------EVLNHESVGGFVT 366 (481)
Q Consensus 296 ~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vpq-~-------~lL~~~~~~~~vt 366 (481)
+.+++.|++.|.+.|+-+.++. -..+.+... .+++.+..-... . .-......+++++
T Consensus 5 ~~l~~~L~~~Gv~~vFgvpG~~--------------~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~ 70 (558)
T TIGR00118 5 EAIIESLKDEGVKTVFGYPGGA--------------ILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLV 70 (558)
T ss_pred HHHHHHHHHcCCCEEEeCCCcc--------------hHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4578888888888888776541 012222221 223332221110 0 0111223445999
Q ss_pred ccCch------hHHHHHhcCCcEEecc
Q 045281 367 HCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 367 HgG~g------s~~eal~~GvP~v~~P 387 (481)
|.|-| .+++|..-++|+|++-
T Consensus 71 t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 71 TSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 98865 6779999999999993
No 350
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=24.88 E-value=1.2e+02 Score=27.40 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=38.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEE
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQ 68 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 68 (481)
++++++. ++.| +.|++++.+++.+.++..+|+++......... .+.+.++......+.++++.
T Consensus 104 ~~~l~ia-gG~G-iap~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~ 166 (232)
T cd06212 104 RPIVLIG-GGSG-MAPLLSLLRDMAASGSDRPVRFFYGARTARDL-FYLEEIAALGEKIPDFTFIP 166 (232)
T ss_pred CcEEEEe-cCcc-hhHHHHHHHHHHhcCCCCcEEEEEeccchHHh-ccHHHHHHHHHhCCCEEEEE
Confidence 3677776 3444 78999999999998744467776543322222 45555655443445666653
No 351
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=24.80 E-value=5.5e+02 Score=24.38 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
..|+++-.++.|-..-+..|+..|.++| +.|.++.....
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~--~~v~~i~~D~~ 73 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRG--LKVAVIAVDPS 73 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 3677888899999999999999999999 99999886533
No 352
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=24.76 E-value=1.6e+02 Score=25.17 Aligned_cols=114 Identities=8% Similarity=0.049 Sum_probs=66.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTL 80 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (481)
|.+-+.++-+-..|-+.=+-.|.+.|.++| ++|..+-..... . . +. ......+++....... ..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G--~rVa~iKH~hh~--~-~----~D--~~GkDs~r~~~aGa~~-----~v 64 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARG--YRVATVKHAHHD--F-D----LD--KPGKDTYRHRKAGADQ-----VV 64 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCC--cEEEEEEecCCC--C-C----CC--CCCCccchhhccccce-----EE
Confidence 567888999999999999999999999999 999988754321 0 0 00 0112233333322110 00
Q ss_pred CCCCChHHHHHHHHHHhh-HHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEeccc
Q 045281 81 RSPVDLPALAYELGELNN-PKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSG 145 (481)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~ 145 (481)
....... ..+.... ..|..++..+.. . .|+||...| +...+|.|.+....
T Consensus 65 ~~s~~~~----~~~~~~~~~~L~~vl~~l~~-~-~D~vLVEGF---------K~~~~pKI~~~r~~ 115 (161)
T COG1763 65 VASDHRT----ALMTRTPDRDLDAVLSRLDP-L-LDLVLVEGF---------KEEPLPKIVLGRDE 115 (161)
T ss_pred EecCCEE----EEEEecCCcCHHHHHHhcCc-c-cCEEEEecc---------ccCCCCEEEEeccc
Confidence 0000000 0111111 566677777632 1 499999987 77788888775543
No 353
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=24.70 E-value=1.8e+02 Score=24.93 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=32.8
Q ss_pred HHHHHhhHHHHHHHHHhhccCCccEEEECCCCch-------------h-H-HHHhhccCCCeEEEeccc
Q 045281 92 ELGELNNPKLHETLITISKRSNLKAFVIDFFCSP-------------A-F-QVSSSTLSIPTYYYFTSG 145 (481)
Q Consensus 92 ~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~-------------~-~-~vA~~~lgIP~v~~~~~~ 145 (481)
..+......+.+++++. +||.++.+..++. | . .++ .+.|||+..+.|+-
T Consensus 44 ~Rl~~I~~~l~~~i~~~----~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~-~~~~ipv~ey~P~~ 107 (164)
T PRK00039 44 ERLKQIYDGLSELIDEY----QPDEVAIEEVFFNKNPQSALKLGQARGVAILAA-AQRGLPVAEYTPLQ 107 (164)
T ss_pred HHHHHHHHHHHHHHHHh----CCCEEEEehhhhccChHHHHHHHHHHHHHHHHH-HHcCCCEEEECHHH
Confidence 34555567888888877 8999977663322 1 1 245 88899999886654
No 354
>PRK06180 short chain dehydrogenase; Provisional
Probab=24.51 E-value=1.1e+02 Score=28.44 Aligned_cols=33 Identities=12% Similarity=-0.077 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
.+.++++ |+.|.+ -..|++.|+++| ++|..+..
T Consensus 4 ~~~vlVt-Gasggi--G~~la~~l~~~G--~~V~~~~r 36 (277)
T PRK06180 4 MKTWLIT-GVSSGF--GRALAQAALAAG--HRVVGTVR 36 (277)
T ss_pred CCEEEEe-cCCChH--HHHHHHHHHhCc--CEEEEEeC
Confidence 3556666 566655 678899999999 99988773
No 355
>PRK07524 hypothetical protein; Provisional
Probab=24.46 E-value=5.2e+02 Score=26.92 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.3
Q ss_pred cceEEeccCch------hHHHHHhcCCcEEec
Q 045281 361 VGGFVTHCGWN------SVLEGVCAGVPMLAW 386 (481)
Q Consensus 361 ~~~~vtHgG~g------s~~eal~~GvP~v~~ 386 (481)
.++++.|.|-| .+.+|...++|+|++
T Consensus 65 ~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i 96 (535)
T PRK07524 65 PGVCFIITGPGMTNIATAMGQAYADSIPMLVI 96 (535)
T ss_pred CeEEEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 34488888866 677999999999998
No 356
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=24.43 E-value=99 Score=27.24 Aligned_cols=36 Identities=8% Similarity=0.039 Sum_probs=26.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||++.-.|+.|=..-.+.+.++|.+.| ++|+++.+.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g--~~V~vI~S~ 37 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEG--AEVTPIVSE 37 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCc--CEEEEEEch
Confidence 565555565555555569999999999 999988854
No 357
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=24.34 E-value=1.3e+02 Score=28.10 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|.+.|.+.-=|+-|.+.=...||..|+++| ++|.++=..
T Consensus 1 m~~iIav~~KGGVGKTT~~~nLA~~la~~G--~kVLliD~D 39 (270)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSAAFAKLG--KKVLQIGCD 39 (270)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecc
Confidence 666777775689999999999999999999 999988543
No 358
>PRK13604 luxD acyl transferase; Provisional
Probab=24.28 E-value=1.4e+02 Score=28.71 Aligned_cols=33 Identities=12% Similarity=0.154 Sum_probs=27.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEE
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDII 38 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~ 38 (481)
.+++++.+..++-.-+..+|+.|+++| ..|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G--~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNG--FHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCC--CEEEEe
Confidence 567778788888777999999999999 666554
No 359
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.18 E-value=1.7e+02 Score=24.17 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=35.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 2 KDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 2 ~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+++|++.+..+.+|-.=---++..|..+| ++|.......
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~G--feVi~LG~~v 39 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAG--FNVVNLGVLS 39 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCC--CEEEECCCCC
Confidence 46899999999999999999999999999 9999988543
No 360
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=24.04 E-value=66 Score=29.32 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=24.7
Q ss_pred CCccEEE-ECCC-CchhHHHHhhccCCCeEEEecccH
Q 045281 112 SNLKAFV-IDFF-CSPAFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 112 ~~pD~vV-~D~~-~~~~~~vA~~~lgIP~v~~~~~~~ 146 (481)
..||+|| .|+. -..+..=| .++|||.|.+.-+.+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea-~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEA-RKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHH-HHcCCCEEEEeeCCC
Confidence 4688876 6763 44466677 999999999876654
No 361
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=23.94 E-value=2.8e+02 Score=29.20 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCcEEecccc-h-------HHhhhccCcc
Q 045281 292 CKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAP-Q-------VEVLNHESVG 362 (481)
Q Consensus 292 ~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~vp-q-------~~lL~~~~~~ 362 (481)
...-+.+++.|++.|.+.|+-+.++. -.++.+.. ..+++.++.... + ..-......+
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~--------------~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~ 74 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSR--------------STPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPV 74 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCc--------------cHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCE
Confidence 44456689999999999888887641 11232222 222333332211 1 0011112233
Q ss_pred eEEeccCch------hHHHHHhcCCcEEecc
Q 045281 363 GFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 363 ~~vtHgG~g------s~~eal~~GvP~v~~P 387 (481)
+++.|.|-| .+++|...++|+|+|.
T Consensus 75 v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 75 AVIVTSGTAVANLYPAVIEAGLTGVPLIVLT 105 (568)
T ss_pred EEEECCccHHHhhhHHHHHHhhcCCcEEEEE
Confidence 488888855 6789999999999994
No 362
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=23.90 E-value=88 Score=29.55 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=32.8
Q ss_pred ccCchhHH--HHHhcCCcEEecccccchhhHHHHHHHhhcee
Q 045281 367 HCGWNSVL--EGVCAGVPMLAWPLYAEQKMIKAVVVEEMKVG 406 (481)
Q Consensus 367 HgG~gs~~--eal~~GvP~v~~P~~~DQ~~na~~v~~~~G~G 406 (481)
-||||+++ .|-.+|+-++.+-+...|..++..-.++.|+-
T Consensus 80 GCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~ 121 (283)
T COG2230 80 GCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE 121 (283)
T ss_pred CCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence 47888665 66777999999999999999999844566887
No 363
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=23.87 E-value=1.6e+02 Score=29.13 Aligned_cols=86 Identities=19% Similarity=0.257 Sum_probs=52.5
Q ss_pred EecccchHHhhhc-----cCcceEEeccCchhHHHHHhc-----------------CCcEEecccccchhhHHHHHHHhh
Q 045281 346 VESWAPQVEVLNH-----ESVGGFVTHCGWNSVLEGVCA-----------------GVPMLAWPLYAEQKMIKAVVVEEM 403 (481)
Q Consensus 346 ~~~~vpq~~lL~~-----~~~~~~vtHgG~gs~~eal~~-----------------GvP~v~~P~~~DQ~~na~~v~~~~ 403 (481)
+.+|+-+..=++. ...++++|.||..+.+-|+.+ +.|.|.++-.. ++-+.+-. .-+
T Consensus 84 vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~l 161 (373)
T PF00282_consen 84 VIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RIL 161 (373)
T ss_dssp HHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHT
T ss_pred HHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-cee
Confidence 3366655433331 135679999998888766532 34566665544 46665555 678
Q ss_pred ceeeeeccCcccccccCHHHHHHHHHHHhcC
Q 045281 404 KVGLAVTRSEEEERLVSAAELEQRVSELMDS 434 (481)
Q Consensus 404 G~G~~l~~~~~~~~~~~~~~l~~av~~il~~ 434 (481)
|+|++.-+.+ +++.++.++|.+++++..++
T Consensus 162 Glg~~~I~~~-~~~~md~~~L~~~l~~~~~~ 191 (373)
T PF00282_consen 162 GLGVRKIPTD-EDGRMDIEALEKALEKDIAN 191 (373)
T ss_dssp TSEEEEE-BB-TTSSB-HHHHHHHHHHHHHT
T ss_pred eeEEEEecCC-cchhhhHHHhhhhhcccccc
Confidence 9996654431 33558889999998877554
No 364
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=23.79 E-value=79 Score=26.78 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=23.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|.++-.|..|+ ++|..|+.+| |+|++.+..
T Consensus 2 I~ViGaG~~G~-----AlA~~la~~g--~~V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWGT-----ALAALLADNG--HEVTLWGRD 31 (157)
T ss_dssp EEEESSSHHHH-----HHHHHHHHCT--EEEEEETSC
T ss_pred EEEECcCHHHH-----HHHHHHHHcC--CEEEEEecc
Confidence 55555555554 7899999999 999999854
No 365
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=3.3e+02 Score=25.04 Aligned_cols=43 Identities=7% Similarity=0.104 Sum_probs=30.7
Q ss_pred HHHHhhHHHHHHHHHhhccCCccEEEECCCCchh---HHHHhhccCCCeE
Q 045281 93 LGELNNPKLHETLITISKRSNLKAFVIDFFCSPA---FQVSSSTLSIPTY 139 (481)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~~---~~vA~~~lgIP~v 139 (481)
.+.........+++++. +-++.+.|.-+... ..+| +..|||++
T Consensus 132 ~~tsn~~aM~~~m~~Lk---~r~l~flDs~T~a~S~a~~iA-k~~gVp~~ 177 (250)
T COG2861 132 RFTSNEDAMEKLMEALK---ERGLYFLDSGTIANSLAGKIA-KEIGVPVI 177 (250)
T ss_pred hhcCcHHHHHHHHHHHH---HCCeEEEcccccccchhhhhH-hhcCCcee
Confidence 33344455666766663 78999999976663 4578 99999999
No 366
>PRK11823 DNA repair protein RadA; Provisional
Probab=23.72 E-value=5.1e+02 Score=26.37 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=30.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
+++.--|+.|-..=++.++..++++| .+|.+++.+.
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~g--~~vlYvs~Ee 118 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAAG--GKVLYVSGEE 118 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEccc
Confidence 45566689999999999999999989 9999998653
No 367
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=23.63 E-value=5.8e+02 Score=26.77 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.7
Q ss_pred cceEEeccCch------hHHHHHhcCCcEEec
Q 045281 361 VGGFVTHCGWN------SVLEGVCAGVPMLAW 386 (481)
Q Consensus 361 ~~~~vtHgG~g------s~~eal~~GvP~v~~ 386 (481)
.+++++|.|-| .+.+|...++|+|++
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i 103 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILF 103 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEE
Confidence 44599998865 667999999999998
No 368
>PRK08840 replicative DNA helicase; Provisional
Probab=23.62 E-value=33 Score=35.15 Aligned_cols=57 Identities=14% Similarity=0.190 Sum_probs=40.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHh-CCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILT-YHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~-~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
+++..-|+.|-+.-.+.+|...+. .| +.|.|++.+... .+.+.++.+...++....+
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~--~~v~~fSlEMs~------~ql~~Rlla~~s~v~~~~i 277 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQD--KPVLIFSLEMPA------EQLMMRMLASLSRVDQTKI 277 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCC--CeEEEEeccCCH------HHHHHHHHHhhCCCCHHHH
Confidence 566777999999999999999874 58 999999876442 2345555444445554444
No 369
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=23.46 E-value=5.1e+02 Score=22.80 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=44.1
Q ss_pred ecccccchhhHHHHHHHhhceeeeec----cCc--c-cccccCHHHHH----HHHHHHhcCchHHHHHHHHHHHHHHHHH
Q 045281 385 AWPLYAEQKMIKAVVVEEMKVGLAVT----RSE--E-EERLVSAAELE----QRVSELMDSEKGRAVKERVVEMKEAAAA 453 (481)
Q Consensus 385 ~~P~~~DQ~~na~~v~~~~G~G~~l~----~~~--~-~~~~~~~~~l~----~av~~il~~~~~~~~~~~a~~l~~~~~~ 453 (481)
+.|.+.||......+-|-.-+|+.=. +.+ + -=..++++.++ +-|+++|+|+. +-++-.++...+..
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~---IIRnr~KI~Avi~N 98 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAG---IIRHRGKIQAIIGN 98 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch---hHHhHHHHHHHHHH
Confidence 35668898888777766666665322 210 0 00127777775 77889999887 44444444443332
Q ss_pred HH------hcCCcHHHHH
Q 045281 454 AM------RDGGSSRVAL 465 (481)
Q Consensus 454 ~~------~~~g~~~~~~ 465 (481)
|- +|+||-...+
T Consensus 99 A~~~l~i~~e~gSf~~yl 116 (187)
T PRK10353 99 ARAYLQMEQNGEPFADFV 116 (187)
T ss_pred HHHHHHHHHhcCCHHHHH
Confidence 21 3566655555
No 370
>PRK10037 cell division protein; Provisional
Probab=23.35 E-value=1.3e+02 Score=27.68 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=31.6
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 1 MKDTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 1 m~~~il~~~~-~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
|| .|.+... |+-|-+.=...||..|+++| ++|.++=.
T Consensus 1 ~~-~iav~n~KGGvGKTT~a~nLA~~La~~G--~rVLlID~ 38 (250)
T PRK10037 1 MA-ILGLQGVRGGVGTTSITAALAWSLQMLG--ENVLVIDA 38 (250)
T ss_pred Cc-EEEEecCCCCccHHHHHHHHHHHHHhcC--CcEEEEeC
Confidence 65 5666666 89999999999999999999 99999843
No 371
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=23.33 E-value=79 Score=28.09 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 15 HLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 15 H~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+.--+..|+++|.+.| |+|+++.|...
T Consensus 12 ~a~Gi~aL~~~L~~~g--~~V~VvAP~~~ 38 (196)
T PF01975_consen 12 DAPGIRALAKALSALG--HDVVVVAPDSE 38 (196)
T ss_dssp TSHHHHHHHHHHTTTS--SEEEEEEESSS
T ss_pred CCHHHHHHHHHHHhcC--CeEEEEeCCCC
Confidence 3445778999999999 99999997654
No 372
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.32 E-value=1.4e+02 Score=26.27 Aligned_cols=45 Identities=7% Similarity=0.039 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCch-hHHHHhhccCCCeEEEecccH
Q 045281 99 PKLHETLITISKRSNLKAFVIDFFCSP-AFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 99 ~~l~~~l~~~~~~~~pD~vV~D~~~~~-~~~vA~~~lgIP~v~~~~~~~ 146 (481)
..+.+++++... ...++|-..+-.+ +..+| +++|+|.|.+.|+..
T Consensus 47 ~~l~~~i~~~~~--~~~~liGSSlGG~~A~~La-~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 47 AQLEQLIEELKP--ENVVLIGSSLGGFYATYLA-ERYGLPAVLINPAVR 92 (187)
T ss_pred HHHHHHHHhCCC--CCeEEEEEChHHHHHHHHH-HHhCCCEEEEcCCCC
Confidence 345566666521 1236666654443 45678 999999999987653
No 373
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=23.26 E-value=85 Score=27.60 Aligned_cols=21 Identities=10% Similarity=-0.026 Sum_probs=17.1
Q ss_pred HHHHHHHHHhCCCCeEEEEEeCC
Q 045281 19 MVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 19 ~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
-..||+++..+| ++|+++...
T Consensus 32 G~~lA~~~~~~G--a~V~li~g~ 52 (185)
T PF04127_consen 32 GAALAEEAARRG--AEVTLIHGP 52 (185)
T ss_dssp HHHHHHHHHHTT---EEEEEE-T
T ss_pred HHHHHHHHHHCC--CEEEEEecC
Confidence 468999999999 999999954
No 374
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.26 E-value=1.5e+02 Score=28.48 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=38.2
Q ss_pred hhccCcceEEeccCchhHHHHHhc----CCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHH
Q 045281 356 LNHESVGGFVTHCGWNSVLEGVCA----GVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSEL 431 (481)
Q Consensus 356 L~~~~~~~~vtHgG~gs~~eal~~----GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~i 431 (481)
...+++ +|+=||-||++.+.+. ++|++.+... + +|-. . + ..++++.++++++
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G------------~--lGFL--~---~---~~~~~~~~~l~~i 125 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG------------H--VGFL--A---E---AEAEDLDEAVERV 125 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC------------C--Ccee--c---c---CCHHHHHHHHHHH
Confidence 345666 9999999999988663 7898888541 1 1111 2 1 4567788888888
Q ss_pred hcCc
Q 045281 432 MDSE 435 (481)
Q Consensus 432 l~~~ 435 (481)
+++.
T Consensus 126 ~~g~ 129 (306)
T PRK03372 126 VDRD 129 (306)
T ss_pred HcCC
Confidence 7654
No 375
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=23.19 E-value=4e+02 Score=28.06 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCcEEecccc-hHHh-------hhccCcceEE
Q 045281 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAP-QVEV-------LNHESVGGFV 365 (481)
Q Consensus 295 ~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~vp-q~~l-------L~~~~~~~~v 365 (481)
-+.+++.|++.|.+.|+-+.++. -..+.+.+ ..+++.++.-.. +... ......++++
T Consensus 13 ~~~i~~~L~~~Gv~~vFgipG~~--------------~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~ 78 (566)
T PRK07282 13 SDLVLETLRDLGVDTIFGYPGGA--------------VLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAV 78 (566)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc--------------hHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEE
Confidence 45688899999999888876641 01233332 122333222111 1110 1112345599
Q ss_pred eccCch------hHHHHHhcCCcEEecc
Q 045281 366 THCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 366 tHgG~g------s~~eal~~GvP~v~~P 387 (481)
+|.|-| .+.+|...++|+|++-
T Consensus 79 ~t~GPG~~n~~~gla~A~~~~~Pvl~i~ 106 (566)
T PRK07282 79 VTSGPGATNAITGIADAMSDSVPLLVFT 106 (566)
T ss_pred ECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 998866 5679999999999994
No 376
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=23.12 E-value=1.1e+02 Score=27.20 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=27.1
Q ss_pred cEEEEEcCCCccCHHH-HHHHHHHHHhCCCCeEEEEEeCC
Q 045281 3 DTIVLYTSPGRGHLNS-MVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P-~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+||++.- .+.....- ...|+++|.++| |+|.++.+.
T Consensus 6 k~IllgV-TGsiaa~k~a~~lir~L~k~G--~~V~vv~T~ 42 (196)
T PRK08305 6 KRIGFGL-TGSHCTYDEVMPEIEKLVDEG--AEVTPIVSY 42 (196)
T ss_pred CEEEEEE-cCHHHHHHHHHHHHHHHHhCc--CEEEEEECH
Confidence 3555544 44555666 699999999999 999998855
No 377
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=23.03 E-value=3.8e+02 Score=28.22 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=21.7
Q ss_pred cceEEeccCch------hHHHHHhcCCcEEecc
Q 045281 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~vtHgG~g------s~~eal~~GvP~v~~P 387 (481)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 44488888865 5679999999999994
No 378
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.02 E-value=1.6e+02 Score=28.13 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=39.2
Q ss_pred HhhhccCcceEEeccCchhHHHHHh----cCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHH
Q 045281 354 EVLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVS 429 (481)
Q Consensus 354 ~lL~~~~~~~~vtHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~ 429 (481)
++...+++ +|+=||=||++.+.+ .++|++.+=.. + +|-. .. ++++++.++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~--lGFL--~~------~~~~~~~~~l~ 119 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG------------H--LGFL--TQ------IPREYMTDKLL 119 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC------------C--CeEe--ec------cCHHHHHHHHH
Confidence 33335677 999999999998865 37888887321 1 1211 22 56788888888
Q ss_pred HHhcCc
Q 045281 430 ELMDSE 435 (481)
Q Consensus 430 ~il~~~ 435 (481)
++++++
T Consensus 120 ~i~~g~ 125 (296)
T PRK04539 120 PVLEGK 125 (296)
T ss_pred HHHcCC
Confidence 888654
No 379
>PRK10818 cell division inhibitor MinD; Provisional
Probab=23.01 E-value=1.4e+02 Score=27.80 Aligned_cols=40 Identities=18% Similarity=0.099 Sum_probs=32.4
Q ss_pred CCcEEEEEcC-CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCC
Q 045281 1 MKDTIVLYTS-PGRGHLNSMVELGKLILTYHPCFSIDIIIPTA 42 (481)
Q Consensus 1 m~~~il~~~~-~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~ 42 (481)
|.+.|.+... |+.|-..-...||..|+++| .+|.++=...
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g--~~vllvD~D~ 41 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKG--KKTVVIDFDI 41 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CeEEEEECCC
Confidence 5555555554 89999999999999999999 9998886543
No 380
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=22.96 E-value=1.7e+02 Score=22.34 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCccCHHH-HHHHHHHHHhCCCCeEEEEEe
Q 045281 1 MKDTIVLYTSPGRGHLNS-MVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P-~l~La~~L~~~G~~h~Vt~~~ 39 (481)
||++|+++|..+.|=-.= ...+=+.|.++| .++.+..
T Consensus 1 mk~kILvvCgsG~~TS~m~~~ki~~~l~~~g--i~~~v~~ 38 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHN--IPVELIQ 38 (94)
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHHCC--CeEEEEE
Confidence 877999999666553333 245667888899 8877765
No 381
>PRK08266 hypothetical protein; Provisional
Probab=22.85 E-value=6e+02 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.172 Sum_probs=22.1
Q ss_pred cceEEeccCch------hHHHHHhcCCcEEecc
Q 045281 361 VGGFVTHCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 361 ~~~~vtHgG~g------s~~eal~~GvP~v~~P 387 (481)
.++++.|.|-| .+.+|...++|+|++-
T Consensus 69 ~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 69 PGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 34588998865 6779999999999983
No 382
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=22.79 E-value=1.5e+02 Score=23.64 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=32.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 4 TIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 4 ~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
||++..-++.|-......|++.|+++| .+|.++-..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g--~~V~~id~D 36 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKG--KPVLAIDAD 36 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEECC
Confidence 478888999999999999999999999 899888754
No 383
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.75 E-value=1.6e+02 Score=28.04 Aligned_cols=58 Identities=9% Similarity=0.142 Sum_probs=38.6
Q ss_pred HhhhccCcceEEeccCchhHHHHHh----cCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHH
Q 045281 354 EVLNHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVS 429 (481)
Q Consensus 354 ~lL~~~~~~~~vtHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~ 429 (481)
++...+++ +|+=||-||++.+++ +++|++.+-... +|. -.. ++++++.++++
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~------------lGF----l~~------~~~~~~~~~l~ 114 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRGN------------LGF----LTD------LDPDNALQQLS 114 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECCC------------CCc----ccc------cCHHHHHHHHH
Confidence 33345667 999999999999975 367877773311 121 122 56778888888
Q ss_pred HHhcCc
Q 045281 430 ELMDSE 435 (481)
Q Consensus 430 ~il~~~ 435 (481)
+++++.
T Consensus 115 ~i~~g~ 120 (292)
T PRK03378 115 DVLEGH 120 (292)
T ss_pred HHHcCC
Confidence 887654
No 384
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=22.40 E-value=1.8e+02 Score=27.45 Aligned_cols=75 Identities=11% Similarity=0.177 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhhccCcceEEecc
Q 045281 289 SFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLNHESVGGFVTHC 368 (481)
Q Consensus 289 ~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~vtHg 368 (481)
..+.+..+.+.+|+.....+.||.+.++... ..+.++++...+-.++.. ||=..
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga------------------------~rlL~~ld~~~~~~~pK~--~iGyS 98 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYGA------------------------NRLLPYLDYDLIRANPKI--FVGYS 98 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH------------------------HHhhhhCCHHHHhhCCeE--EEEec
Confidence 3455668889999999999999999886211 112244444444455555 55555
Q ss_pred CchhHHHHHhc--CCcEEecccc
Q 045281 369 GWNSVLEGVCA--GVPMLAWPLY 389 (481)
Q Consensus 369 G~gs~~eal~~--GvP~v~~P~~ 389 (481)
-..+.+-+++. |++.+--|+.
T Consensus 99 DiTaL~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 99 DITALHLALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHHHHHHHhcCceEEECccc
Confidence 55555555532 5666555543
No 385
>PRK06436 glycerate dehydrogenase; Provisional
Probab=22.37 E-value=4.7e+02 Score=25.04 Aligned_cols=63 Identities=11% Similarity=0.255 Sum_probs=39.3
Q ss_pred cEEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccchHHhhh
Q 045281 278 SVLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAPQVEVLN 357 (481)
Q Consensus 278 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vpq~~lL~ 357 (481)
.+-.|++|++. +.+++-++..|.+++. +.... .+. ++.. .+.+..++|+
T Consensus 124 tvgIiG~G~IG-------~~vA~~l~afG~~V~~-~~r~~-------------~~~---------~~~~-~~~~l~ell~ 172 (303)
T PRK06436 124 SLGILGYGGIG-------RRVALLAKAFGMNIYA-YTRSY-------------VND---------GISS-IYMEPEDIMK 172 (303)
T ss_pred EEEEECcCHHH-------HHHHHHHHHCCCEEEE-ECCCC-------------ccc---------Cccc-ccCCHHHHHh
Confidence 38889999987 4455556666777543 32210 011 1111 2457788999
Q ss_pred ccCcceEEeccCchhH
Q 045281 358 HESVGGFVTHCGWNSV 373 (481)
Q Consensus 358 ~~~~~~~vtHgG~gs~ 373 (481)
.+++ ++.|+-.+.-
T Consensus 173 ~aDi--v~~~lp~t~~ 186 (303)
T PRK06436 173 KSDF--VLISLPLTDE 186 (303)
T ss_pred hCCE--EEECCCCCch
Confidence 9999 9999987643
No 386
>PRK06182 short chain dehydrogenase; Validated
Probab=22.34 E-value=1.4e+02 Score=27.71 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEe
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
|+.+.++++ |+.|.+ -..+|++|.++| |+|..+.
T Consensus 1 ~~~k~vlIt-Gasggi--G~~la~~l~~~G--~~V~~~~ 34 (273)
T PRK06182 1 MQKKVALVT-GASSGI--GKATARRLAAQG--YTVYGAA 34 (273)
T ss_pred CCCCEEEEE-CCCChH--HHHHHHHHHHCC--CEEEEEe
Confidence 555566666 455554 577999999999 9998776
No 387
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.31 E-value=5.4e+02 Score=27.14 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=45.9
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhh-cCCCcEEecccc-hHH-------hhhccCcceEE
Q 045281 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRT-KDRGLVVESWAP-QVE-------VLNHESVGGFV 365 (481)
Q Consensus 295 ~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~vp-q~~-------lL~~~~~~~~v 365 (481)
-+.+++.|++.|.+.|+-+.++.. ..+.+.+ ..+++.+..-.. +.. -..+...++++
T Consensus 7 a~~l~~~L~~~Gv~~vFgipG~~~--------------~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~ 72 (574)
T PRK06466 7 AEMLVRALRDEGVEYIYGYPGGAV--------------LHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVL 72 (574)
T ss_pred HHHHHHHHHHcCCCEEEECCCcch--------------hHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEE
Confidence 356888899999988887765410 1233222 122333322111 100 00122344589
Q ss_pred eccCch------hHHHHHhcCCcEEecc
Q 045281 366 THCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 366 tHgG~g------s~~eal~~GvP~v~~P 387 (481)
+|.|-| .+.+|...++|+|++-
T Consensus 73 vt~GPG~~N~l~gl~~A~~~~~Pvl~i~ 100 (574)
T PRK06466 73 VTSGPGATNAITGIATAYMDSIPMVVLS 100 (574)
T ss_pred ECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 998855 6779999999999993
No 388
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=22.22 E-value=83 Score=27.27 Aligned_cols=44 Identities=7% Similarity=0.114 Sum_probs=29.2
Q ss_pred hHHHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEEecccH
Q 045281 98 NPKLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 98 ~~~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~~~~~~ 146 (481)
...++..++++.+ .+.|+||.+.. +...| +++|+|++.+.+..-
T Consensus 111 ~~e~~~~i~~~~~-~G~~viVGg~~---~~~~A-~~~gl~~v~i~sg~e 154 (176)
T PF06506_consen 111 EEEIEAAIKQAKA-EGVDVIVGGGV---VCRLA-RKLGLPGVLIESGEE 154 (176)
T ss_dssp HHHHHHHHHHHHH-TT--EEEESHH---HHHHH-HHTTSEEEESS--HH
T ss_pred HHHHHHHHHHHHH-cCCcEEECCHH---HHHHH-HHcCCcEEEEEecHH
Confidence 3456666665433 48999999963 57889 999999998877543
No 389
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=22.20 E-value=1.2e+02 Score=27.93 Aligned_cols=64 Identities=3% Similarity=0.038 Sum_probs=38.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCC-CCeEEEEc
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATV-PSVTFHQL 69 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~-~~i~~~~~ 69 (481)
++++++.. +.| +.|++++++.+.+.++..+|+++-......-. .|++.++++.... ..+++...
T Consensus 107 ~~~vlIag-GtG-ItP~~s~l~~~~~~~~~~~v~l~~g~r~~~d~-~~~~el~~l~~~~~~~~~v~~~ 171 (248)
T PRK10926 107 ETLWMLAT-GTA-IGPYLSILQEGKDLERFKNLVLVHAARYAADL-SYLPLMQELEQRYEGKLRIQTV 171 (248)
T ss_pred CeEEEEEe-eee-HHHHHHHHHhhHhhCCCCcEEEEEeCCcHHHH-HHHHHHHHHHHhCcCCEEEEEE
Confidence 35676663 333 89999999999866543577766643322222 4556665543333 36776654
No 390
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=22.18 E-value=1.1e+02 Score=27.64 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=23.0
Q ss_pred CccEEEECCCC--chhHHHHhhccCCCeEEEeccc
Q 045281 113 NLKAFVIDFFC--SPAFQVSSSTLSIPTYYYFTSG 145 (481)
Q Consensus 113 ~pD~vV~D~~~--~~~~~vA~~~lgIP~v~~~~~~ 145 (481)
+||+||..... .....-. ...+||++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~-~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKL-LEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHH-HHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHH-hcccceEEEeeccc
Confidence 99999988766 3344566 78999999987765
No 391
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=22.15 E-value=1.4e+02 Score=27.69 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=32.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
+-++|+--|+.|-..=..+||.+|.++| +.|+|++.+
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g--~sv~f~~~~ 142 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAG--ISVLFITAP 142 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEEHH
Confidence 3578888899999999999999999999 999999843
No 392
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=21.87 E-value=1.1e+02 Score=30.66 Aligned_cols=49 Identities=24% Similarity=0.156 Sum_probs=34.6
Q ss_pred hcCCCcEEecccchHHhhhccC--cceEEeccCchhHHHHHhcCCcEEecc
Q 045281 339 TKDRGLVVESWAPQVEVLNHES--VGGFVTHCGWNSVLEGVCAGVPMLAWP 387 (481)
Q Consensus 339 ~~~~~~~~~~~vpq~~lL~~~~--~~~~vtHgG~gs~~eal~~GvP~v~~P 387 (481)
++...=.+.+|-=+..+|..++ .=..+||||--++-.+++.|.-+|+=.
T Consensus 460 mkDGsdavsDwp~lnallntA~GatwvslHhGGGvgmG~s~h~G~viVaDG 510 (561)
T COG2987 460 MKDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIVADG 510 (561)
T ss_pred ccCccchhhhhHHHHHHhhhccCCcEEEEecCCcccccccccCceEEEecC
Confidence 3333344668988899887543 113799999988888888887776543
No 393
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.79 E-value=2e+02 Score=27.49 Aligned_cols=55 Identities=22% Similarity=0.317 Sum_probs=39.0
Q ss_pred hccCcceEEeccCchhHHHHHh----cCCcEEecccccchhhHHHHHHHhhceeeeeccCcccccccCHHHHHHHHHHHh
Q 045281 357 NHESVGGFVTHCGWNSVLEGVC----AGVPMLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEERLVSAAELEQRVSELM 432 (481)
Q Consensus 357 ~~~~~~~~vtHgG~gs~~eal~----~GvP~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~~~~~~~l~~av~~il 432 (481)
..+++ +|+=||-||+++++. .++|++.+... + +| .+ .. ++++++.++|++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~--lG-Fl-~~------~~~~~~~~~l~~~~ 116 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG------------R--LG-FL-TD------IRPDELEFKLAEVL 116 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------c--cc-cc-cc------CCHHHHHHHHHHHH
Confidence 34666 999999999999875 36788877541 1 22 11 22 67888999999888
Q ss_pred cCc
Q 045281 433 DSE 435 (481)
Q Consensus 433 ~~~ 435 (481)
.++
T Consensus 117 ~g~ 119 (295)
T PRK01231 117 DGH 119 (295)
T ss_pred cCC
Confidence 654
No 394
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=21.71 E-value=1.4e+02 Score=30.94 Aligned_cols=100 Identities=7% Similarity=-0.064 Sum_probs=0.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPV 84 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 84 (481)
+++..-|+.|-..=...++...++.| .+|.+++...... .+.....++ |+.+..+-....- .-.....
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~~g--~~~~yis~e~~~~---~i~~~~~~~-----g~~~~~~~~~g~l--~i~~~~~ 343 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACRRG--ERCLLFAFEESRA---QLIRNARSW-----GIDLEKMEEKGLL--KIICARP 343 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCC--CcEEEEEecCCHH---HHHHHHHHc-----CCChHHHhhcCCc--eeecCCc
Q ss_pred ChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCCch
Q 045281 85 DLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFCSP 125 (481)
Q Consensus 85 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~~~ 125 (481)
.... .......+.+.+++. ++|+||.|.++..
T Consensus 344 ~~~~-----~~~~~~~i~~~i~~~----~~~~vVIDslt~l 375 (509)
T PRK09302 344 ESYG-----LEDHLIIIKREIEEF----KPSRVAIDPLSAL 375 (509)
T ss_pred ccCC-----HHHHHHHHHHHHHHc----CCCEEEEcCHHHH
No 395
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=21.61 E-value=4.3e+02 Score=24.47 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=33.1
Q ss_pred chHHhhhccCcceEE--ec--cCchhHHHHHhcCCcEEeccccc--chhhHHHHHHHhhceeeeeccC
Q 045281 351 PQVEVLNHESVGGFV--TH--CGWNSVLEGVCAGVPMLAWPLYA--EQKMIKAVVVEEMKVGLAVTRS 412 (481)
Q Consensus 351 pq~~lL~~~~~~~~v--tH--gG~gs~~eal~~GvP~v~~P~~~--DQ~~na~~v~~~~G~G~~l~~~ 412 (481)
...+++..+++ +| |+ ...--+..++.+|+|+|+-|... +|..--... . -++++.+-..
T Consensus 53 dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~a-a-~~~~v~~s~n 116 (257)
T PRK00048 53 DLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEA-A-KKIPVVIAPN 116 (257)
T ss_pred CHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHH-h-cCCCEEEECc
Confidence 44555666666 44 32 22345567899999999988643 333222233 2 3666666553
No 396
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=21.61 E-value=1.5e+02 Score=26.78 Aligned_cols=64 Identities=6% Similarity=0.020 Sum_probs=39.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEc
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQL 69 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~ 69 (481)
++++++..+ .-+.|++++++++.+.++..+++++-........ .+.+.++++....+++++..+
T Consensus 109 ~~~vliagG--tGiaP~~~~l~~~~~~~~~~~v~l~~~~r~~~~~-~~~~~l~~l~~~~~~~~~~~~ 172 (236)
T cd06210 109 RPRWFVAGG--TGLAPLLSMLRRMAEWGEPQEARLFFGVNTEAEL-FYLDELKRLADSLPNLTVRIC 172 (236)
T ss_pred ccEEEEccC--cchhHHHHHHHHHHhcCCCceEEEEEecCCHHHh-hhHHHHHHHHHhCCCeEEEEE
Confidence 367777744 4699999999999887644567776533222222 344555554444467776554
No 397
>PRK07586 hypothetical protein; Validated
Probab=21.55 E-value=5e+02 Score=26.90 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=42.7
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhc-CCCcEEecccc-hHH-------hhhccCcceEEe
Q 045281 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTK-DRGLVVESWAP-QVE-------VLNHESVGGFVT 366 (481)
Q Consensus 296 ~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~vp-q~~-------lL~~~~~~~~vt 366 (481)
+.+++.|++.|.+.|+-+.++. -..+.+.+. .+++..+.-.. +.. -.-....++++.
T Consensus 5 ~~l~~~L~~~Gv~~vFG~pG~~--------------~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~ 70 (514)
T PRK07586 5 ESLVRTLVDGGVDVCFANPGTS--------------EMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLL 70 (514)
T ss_pred HHHHHHHHHCCCCEEEECCCCc--------------hHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEe
Confidence 4577888888888888776541 012222221 12332222111 110 011123344888
Q ss_pred ccCchhHH------HHHhcCCcEEecc
Q 045281 367 HCGWNSVL------EGVCAGVPMLAWP 387 (481)
Q Consensus 367 HgG~gs~~------eal~~GvP~v~~P 387 (481)
|.|-|.+. +|...++|+|++.
T Consensus 71 t~GPG~~N~~~gl~~A~~~~~Pvl~i~ 97 (514)
T PRK07586 71 HLGPGLANGLANLHNARRARTPIVNIV 97 (514)
T ss_pred cccHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 88866544 7999999999985
No 398
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=21.40 E-value=1.5e+02 Score=27.50 Aligned_cols=37 Identities=14% Similarity=0.140 Sum_probs=26.4
Q ss_pred HHHHHHHHhhccCCccEEEECCCCch----h-HHHHhhccCCCeEEE
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCSP----A-FQVSSSTLSIPTYYY 141 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~~----~-~~vA~~~lgIP~v~~ 141 (481)
.-+.+++++ +.|+||+-..-.. . ..+| +.+|||+|.+
T Consensus 187 ~n~all~q~----~id~vItK~SG~~Gg~~~Ki~aA-~eLgi~VI~I 228 (257)
T COG2099 187 DNKALLEQY----RIDVVVTKNSGGAGGTYEKIEAA-RELGIPVIMI 228 (257)
T ss_pred HHHHHHHHh----CCCEEEEccCCcccCcHHHHHHH-HHcCCcEEEE
Confidence 346667776 9999998763332 1 3466 9999999966
No 399
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=21.35 E-value=5.2e+02 Score=26.31 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=61.6
Q ss_pred EEEE-cCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCC
Q 045281 5 IVLY-TSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSP 83 (481)
Q Consensus 5 il~~-~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (481)
|++. |-...|-+.=.+.|++.|+++| ++|..+-+... . +. +.+ +..-.. .+ . .+.
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G--~~V~~fK~g~d-~--------~D------~~~--~~~~~g-~~--~--~~l 57 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRK--LRVQPFKVGPD-Y--------ID------PMF--HTQATG-RP--S--RNL 57 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCC--CceeEEccCCC-C--------CC------HHH--HHHHhC-Cc--h--hhC
Confidence 3444 4456788999999999999999 99998865311 0 00 000 000000 00 0 111
Q ss_pred CChHHHHHHHHHHhhHHHHHHHHHhhccCCccEEEECCCC------------chhHHHHhhccCCCeEEEecccH
Q 045281 84 VDLPALAYELGELNNPKLHETLITISKRSNLKAFVIDFFC------------SPAFQVSSSTLSIPTYYYFTSGG 146 (481)
Q Consensus 84 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vV~D~~~------------~~~~~vA~~~lgIP~v~~~~~~~ 146 (481)
+.. + ...+.+++.++++. .+.|++|++... .....+| +.++.|++.+.....
T Consensus 58 -d~~--~-----~~~~~i~~~~~~~~--~~~D~viVEGagGl~~g~~p~~~~~s~adlA-k~l~~pVILV~~~~~ 121 (449)
T TIGR00379 58 -DSF--F-----MSEAQIQECFHRHS--KGTDYSIIEGVRGLYDGISAITDYGSTASVA-KALDAPIVLVMNCQR 121 (449)
T ss_pred -Ccc--c-----CCHHHHHHHHHHhc--ccCCEEEEecCCccccCCCCCCCCccHHHHH-HHhCCCEEEEECCch
Confidence 100 0 12344555555543 368999966531 2356899 999999999987653
No 400
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.34 E-value=1.4e+02 Score=30.30 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=25.2
Q ss_pred HHHHHHHHhhccCCccEEEECCCCchhHHHHhhccCCCeEEE
Q 045281 100 KLHETLITISKRSNLKAFVIDFFCSPAFQVSSSTLSIPTYYY 141 (481)
Q Consensus 100 ~l~~~l~~~~~~~~pD~vV~D~~~~~~~~vA~~~lgIP~v~~ 141 (481)
.+.+.+++. ++|++|.... +..+| +++|||++.+
T Consensus 364 ~l~~~i~~~----~~dliig~s~---~k~~A-~~l~ip~ir~ 397 (432)
T TIGR01285 364 DLEDLACAA----GADLLITNSH---GRALA-QRLALPLVRA 397 (432)
T ss_pred HHHHHHhhc----CCCEEEECcc---hHHHH-HHcCCCEEEe
Confidence 334555554 8999998864 56788 9999999844
No 401
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=21.33 E-value=7.7e+02 Score=26.02 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc-hHH-------hhhccCcceEEec
Q 045281 296 KEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP-QVE-------VLNHESVGGFVTH 367 (481)
Q Consensus 296 ~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp-q~~-------lL~~~~~~~~vtH 367 (481)
+.+++.|++.|++.|+-+.++.. ..+.+.+...++.++.--. +.. -..+...+++++|
T Consensus 6 ~~l~~~L~~~GV~~vFGipG~~~--------------~~l~dal~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t 71 (579)
T TIGR03457 6 EAFVEVLVANGVTHAFGIMGSAF--------------MDAMDLFPPAGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQ 71 (579)
T ss_pred HHHHHHHHHCCCCEEEEccCcch--------------HHHHHHHhhcCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 55888888899988888766410 1122222222322221111 110 0112234458999
Q ss_pred cCch------hHHHHHhcCCcEEecc
Q 045281 368 CGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 368 gG~g------s~~eal~~GvP~v~~P 387 (481)
.|-| .+.+|...++|+|++.
T Consensus 72 ~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 72 NGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 8876 5569999999999995
No 402
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=21.24 E-value=1.2e+02 Score=28.77 Aligned_cols=37 Identities=8% Similarity=-0.058 Sum_probs=27.1
Q ss_pred CCcEEEEEcCC-CccCHH---HHHHHHHHHHhCCCCeEEEEEe
Q 045281 1 MKDTIVLYTSP-GRGHLN---SMVELGKLILTYHPCFSIDIII 39 (481)
Q Consensus 1 m~~~il~~~~~-~~GH~~---P~l~La~~L~~~G~~h~Vt~~~ 39 (481)
|+++|++++-+ +.=|-. --..+.++|.++| |+|..+.
T Consensus 3 ~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g--~~v~~i~ 43 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAG--YDAHPID 43 (304)
T ss_pred CCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCC--CEEEEEe
Confidence 66789888843 222333 5578999999999 9998875
No 403
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=21.19 E-value=2.4e+02 Score=28.50 Aligned_cols=123 Identities=12% Similarity=0.160 Sum_probs=75.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCCCCCcchhhhhccCCCCCeEEEEcCCCCCCCCCCCCCCC
Q 045281 5 IVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPTAPFVTSAGTDDYIASVSATVPSVTFHQLPPPVSGLLDTLRSPV 84 (481)
Q Consensus 5 il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 84 (481)
|++..-|+.|-+.-++.+|..++.... -.|+|++.+.. ..+.+.++.+...++.-..+..+.. +..
T Consensus 199 ii~AaRP~mGKTafalnia~n~a~~~~-~~v~iFSLEM~------~eql~~R~Ls~~s~v~~~kirtg~l-------~~~ 264 (435)
T COG0305 199 IIVAARPGMGKTALALNIALNAAADGR-KPVAIFSLEMS------EEQLVMRLLSSESGIESSKLRTGRL-------SDD 264 (435)
T ss_pred EEEccCCCCChHHHHHHHHHHHHHhcC-CCeEEEEccCC------HHHHHHHhhccccccchhccccccc-------cHH
Confidence 566677999999999999999999652 45899986643 3335666655555666555443321 110
Q ss_pred ChHHHHHHHHH--------------HhhHHHHHHHHHhhccCCccEEEECCCC--ch-h----------------HHHHh
Q 045281 85 DLPALAYELGE--------------LNNPKLHETLITISKRSNLKAFVIDFFC--SP-A----------------FQVSS 131 (481)
Q Consensus 85 ~~~~~~~~~~~--------------~~~~~l~~~l~~~~~~~~pD~vV~D~~~--~~-~----------------~~vA~ 131 (481)
+... +..... .....++.-.+++.++.+.++|+.|.+- .. . -.+|
T Consensus 265 d~~~-l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~~~r~qevs~iSr~LK~lA- 342 (435)
T COG0305 265 EWER-LIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKSENRKQEVSEISRSLKGLA- 342 (435)
T ss_pred HHHH-HHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccccchhHHHHHHHHHHHHHHHH-
Confidence 1111 111111 1234556666666555689999999832 21 2 2478
Q ss_pred hccCCCeEEEec
Q 045281 132 STLSIPTYYYFT 143 (481)
Q Consensus 132 ~~lgIP~v~~~~ 143 (481)
++++||.+.++.
T Consensus 343 kEl~vpvialSQ 354 (435)
T COG0305 343 KELGVPVIALSQ 354 (435)
T ss_pred HhcCCcEEehhh
Confidence 999999996644
No 404
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=21.05 E-value=1.3e+02 Score=27.55 Aligned_cols=31 Identities=10% Similarity=-0.043 Sum_probs=20.8
Q ss_pred CccEEEECCCCch--hHH-HHhhccCCCeEEEecc
Q 045281 113 NLKAFVIDFFCSP--AFQ-VSSSTLSIPTYYYFTS 144 (481)
Q Consensus 113 ~pD~vV~D~~~~~--~~~-vA~~~lgIP~v~~~~~ 144 (481)
+||+||....... ... +- +.+|||++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~-~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQ-KKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHH-HhhCCCEEEEecC
Confidence 9999998764332 123 33 4589999987654
No 405
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.03 E-value=1.8e+02 Score=23.17 Aligned_cols=33 Identities=12% Similarity=0.135 Sum_probs=27.3
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 7 LYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 7 ~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
++.+...|+...++.+.+.++++| +.|..+|..
T Consensus 57 vi~is~sg~~~~~~~~~~~ak~~g--~~vi~iT~~ 89 (131)
T PF01380_consen 57 VIIISYSGETRELIELLRFAKERG--APVILITSN 89 (131)
T ss_dssp EEEEESSSTTHHHHHHHHHHHHTT--SEEEEEESS
T ss_pred eEeeeccccchhhhhhhHHHHhcC--CeEEEEeCC
Confidence 333347889999999999999999 999888844
No 406
>PRK06179 short chain dehydrogenase; Provisional
Probab=21.01 E-value=1.5e+02 Score=27.45 Aligned_cols=33 Identities=6% Similarity=-0.038 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
.+.++++ |+.|-+ -..++++|+++| ++|+.++.
T Consensus 4 ~~~vlVt-Gasg~i--G~~~a~~l~~~g--~~V~~~~r 36 (270)
T PRK06179 4 SKVALVT-GASSGI--GRATAEKLARAG--YRVFGTSR 36 (270)
T ss_pred CCEEEEe-cCCCHH--HHHHHHHHHHCC--CEEEEEeC
Confidence 3556666 455666 568999999999 99988763
No 407
>PLN02939 transferase, transferring glycosyl groups
Probab=20.91 E-value=1.7e+02 Score=32.76 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=29.2
Q ss_pred cEEEEEcC-----C-CccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 3 DTIVLYTS-----P-GRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 3 ~~il~~~~-----~-~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
+||++++. - +.|=-.-.-.|.++|++.| |+|.+++|...
T Consensus 482 mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~G--hdV~VIlP~Y~ 526 (977)
T PLN02939 482 LHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKG--HLVEIVLPKYD 526 (977)
T ss_pred CEEEEEEcccccccccccHHHHHHHHHHHHHHcC--CeEEEEeCCCc
Confidence 58888865 2 3333444678999999999 99999997554
No 408
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=20.69 E-value=1.5e+02 Score=24.18 Aligned_cols=37 Identities=11% Similarity=0.189 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCC-ccCHHHHHHHHHHHHhCCCCeEE-EEEe
Q 045281 1 MKDTIVLYTSPG-RGHLNSMVELGKLILTYHPCFSI-DIII 39 (481)
Q Consensus 1 m~~~il~~~~~~-~GH~~P~l~La~~L~~~G~~h~V-t~~~ 39 (481)
||--|++-..|- .-...-.+.+|+.+.+.| |+| +++-
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~g--h~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEG--HELVSVFF 39 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCC--CCeeEEEE
Confidence 553444444453 334466788999999999 984 6655
No 409
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=20.69 E-value=3.6e+02 Score=19.90 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 418 LVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 418 ~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
++.++.+.+-++.++++. +.+-...+.+.+. +|-+....+..|.+.+...
T Consensus 2 ~p~~~~i~~i~~~~~~~~----~~~~~~~~~~l~~----~G~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 2 WPPPEVIEEILESCLNGD----FKEARKKLYELLV----EGYSASDILKQLHEVLVES 51 (89)
T ss_dssp S--HHHHHHHHHHHHHTC----HHHHHHHHHHHHH----TT--HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHhCC----HHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHh
Confidence 467788888888777663 6666666666554 4777777777777776654
No 410
>PRK13768 GTPase; Provisional
Probab=20.53 E-value=1.5e+02 Score=27.45 Aligned_cols=39 Identities=13% Similarity=0.217 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|++-+++...++.|-..=...++..|++.| ++|.++...
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g--~~v~~i~~D 39 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQG--YDVAIVNLD 39 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcC--CceEEEECC
Confidence 677788888899999999999999999999 999998743
No 411
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=20.22 E-value=1.3e+02 Score=27.60 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=27.5
Q ss_pred CCccCHHHHHHHHHHHHhCCCCeEEEEEeCCCC
Q 045281 11 PGRGHLNSMVELGKLILTYHPCFSIDIIIPTAP 43 (481)
Q Consensus 11 ~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~~~ 43 (481)
|+.|-+.=+..||++|.++| .+|.+.|+...
T Consensus 6 G~gGKTtl~~~l~~~~~~~g--~~v~~TTTT~m 36 (232)
T TIGR03172 6 GAGGKTSTMFWLAAEYRKEG--YRVLVTTTTRM 36 (232)
T ss_pred cCCcHHHHHHHHHHHHHHCC--CeEEEECCccc
Confidence 56899999999999999999 99999887643
No 412
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=20.17 E-value=8e+02 Score=24.75 Aligned_cols=34 Identities=9% Similarity=0.021 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeCC
Q 045281 1 MKDTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIPT 41 (481)
Q Consensus 1 m~~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~~ 41 (481)
|-+||+++--+-. -+.+++++.+.| ++|..+.+.
T Consensus 1 ~~~~ililg~g~~-----~~~~~~~a~~lG--~~~v~~~~~ 34 (450)
T PRK06111 1 MFQKVLIANRGEI-----AVRIIRTCQKLG--IRTVAIYSE 34 (450)
T ss_pred CcceEEEECCcHH-----HHHHHHHHHHcC--CeEEEEech
Confidence 6678888875444 377788899999 999988743
No 413
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=20.17 E-value=2e+02 Score=22.67 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=30.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCCeEEEEEeC
Q 045281 3 DTIVLYTSPGRGHLNSMVELGKLILTYHPCFSIDIIIP 40 (481)
Q Consensus 3 ~~il~~~~~~~GH~~P~l~La~~L~~~G~~h~Vt~~~~ 40 (481)
++++.++.....+...+..+++.+++++|+..|.+-.+
T Consensus 52 pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 52 PDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp CSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred CcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 46778887788899999999999999987666666653
No 414
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=20.12 E-value=4.9e+02 Score=25.62 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=27.0
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHhCCCcEEEEEeC
Q 045281 279 VLLLCFGSLGSFSCKQLKEMAIGLERSGVKFLWVVRA 315 (481)
Q Consensus 279 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~iw~~~~ 315 (481)
++++++|+.. ...-+-.++++|.+.|..+.+....
T Consensus 3 Il~~~~p~~G--Hv~P~l~la~~L~~rGh~V~~~t~~ 37 (401)
T cd03784 3 VLITTIGSRG--DVQPLVALAWALRAAGHEVRVATPP 37 (401)
T ss_pred EEEEeCCCcc--hHHHHHHHHHHHHHCCCeEEEeeCH
Confidence 7888999766 3344567888888999998888765
No 415
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=20.11 E-value=5.2e+02 Score=26.59 Aligned_cols=107 Identities=21% Similarity=0.173 Sum_probs=65.5
Q ss_pred cccchHH---hhhccCcceEEec--cCchhHH-HHHhcCCc----EEecccccchhhHHHHHHHhhceeeeeccCccccc
Q 045281 348 SWAPQVE---VLNHESVGGFVTH--CGWNSVL-EGVCAGVP----MLAWPLYAEQKMIKAVVVEEMKVGLAVTRSEEEER 417 (481)
Q Consensus 348 ~~vpq~~---lL~~~~~~~~vtH--gG~gs~~-eal~~GvP----~v~~P~~~DQ~~na~~v~~~~G~G~~l~~~~~~~~ 417 (481)
+-+|+.+ ++..+++ ++||- -|.|-+. |-+++-.| +|++ -++.=|+ ++|+-++.+++
T Consensus 338 ~~~~~~~l~alyr~ADv-~lVTplRDGMNLVAkEyva~q~~~~~GvLIL----SefAGaA---~~L~~AllVNP------ 403 (474)
T PRK10117 338 QHFDRKLLMKIFRYSDV-GLVTPLRDGMNLVAKEYVAAQDPANPGVLVL----SQFAGAA---NELTSALIVNP------ 403 (474)
T ss_pred CCCCHHHHHHHHHhccE-EEecccccccccccchheeeecCCCCccEEE----ecccchH---HHhCCCeEECC------
Confidence 3456544 5556666 56663 4887555 66666543 2333 1222233 34566888888
Q ss_pred ccCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhh
Q 045281 418 LVSAAELEQRVSELMDSEKGRAVKERVVEMKEAAAAAMRDGGSSRVALDNLVESFKRG 475 (481)
Q Consensus 418 ~~~~~~l~~av~~il~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 475 (481)
.+.+.+++|+.+.|.-+. ++-+++.+++.+.++. -+...=.+.|++.+...
T Consensus 404 -~d~~~~A~Ai~~AL~Mp~-~Er~~R~~~l~~~v~~-----~dv~~W~~~fL~~L~~~ 454 (474)
T PRK10117 404 -YDRDEVAAALDRALTMPL-AERISRHAEMLDVIVK-----NDINHWQECFISDLKQI 454 (474)
T ss_pred -CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHhhh-----CCHHHHHHHHHHHHHHh
Confidence 689999999999998652 2356666666666653 34445566777766655
No 416
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=20.10 E-value=5.4e+02 Score=27.03 Aligned_cols=79 Identities=20% Similarity=0.171 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCccccccccccCchhhHhhhcCCCcEEecccc-hH-------HhhhccCcceEEe
Q 045281 295 LKEMAIGLERSGVKFLWVVRAPAPDSVENRSSLESLLPEGFLDRTKDRGLVVESWAP-QV-------EVLNHESVGGFVT 366 (481)
Q Consensus 295 ~~~~~~al~~~~~~~iw~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~vp-q~-------~lL~~~~~~~~vt 366 (481)
-+.+++.|++.|.+.|+-+.++. -..+.+.+...++..+.-.. +. .-.-....+++++
T Consensus 11 ~~~l~~~L~~~Gv~~vFgipG~~--------------~~~l~~al~~~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~ 76 (561)
T PRK06048 11 ARAIIKCLEKEGVEVIFGYPGGA--------------IIPVYDELYDSDLRHILVRHEQAAAHAADGYARATGKVGVCVA 76 (561)
T ss_pred HHHHHHHHHHcCCCEEEECCCcc--------------hHHHHHHHhhCCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45688888888888888776541 01222222212222211111 00 0011123444999
Q ss_pred ccCch------hHHHHHhcCCcEEecc
Q 045281 367 HCGWN------SVLEGVCAGVPMLAWP 387 (481)
Q Consensus 367 HgG~g------s~~eal~~GvP~v~~P 387 (481)
|.|-| .+.+|...++|+|++-
T Consensus 77 t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 103 (561)
T PRK06048 77 TSGPGATNLVTGIATAYMDSVPIVALT 103 (561)
T ss_pred CCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 98865 6679999999999983
Done!