BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045282
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VY8|A Chain A, The 627-Domain From Influenza A Virus Polymerase Pb2
           Subunit With Glu-627
          Length = 157

 Score = 28.9 bits (63), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 9/75 (12%)

Query: 25  PEQGPCPPETLDISQKETGN--IVQGKKEFAVEVFNWCKCAQRNVTLDCDGFQTVEKPDP 82
           PEQ      +L ++ + +G   +V+G       VFN+ K  +R   L  D    +E PD 
Sbjct: 90  PEQSRMQFSSLTVNVRGSGMRILVRGNSP----VFNYNKTTKRLTILGKDAGTLIEDPDE 145

Query: 83  VQMSISGFQCILLQG 97
              S SG +  +L+G
Sbjct: 146 ---STSGVESAVLRG 157


>pdb|3R2V|A Chain A, Crystal Structure Of Polymerase Basic Protein 2 E538-R753
           From Influenza A Virus AYOKOHAMA201703 H3N2
          Length = 216

 Score = 28.5 bits (62), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 56  VFNWCKCAQRNVTLDCDGFQTVEKPDPVQMSISGFQCILLQGRDII 101
           VFN+ K  +R   L  D    +E PD    S SG +  +L+G  II
Sbjct: 118 VFNYNKTTKRLTILGKDAGTLIEDPDE---STSGVESAVLRGFLII 160


>pdb|2VY6|A Chain A, Two Domains From The C-Terminal Region Of Influenza A
           Virus Polymerase Pb2 Subunit
          Length = 217

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 56  VFNWCKCAQRNVTLDCDGFQTVEKPDPVQMSISGFQCILLQG 97
           VFN+ K  +R   L  D    +E PD    S SG +  +L+G
Sbjct: 119 VFNYNKTTKRLTILGKDAGTLIEDPDE---STSGVESAVLRG 157


>pdb|1Q27|A Chain A, Nmr Solution Structure Of Dr0079: An Hypothetical Nudix
           Protein From D. Radiodurans
 pdb|2O5F|A Chain A, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
           At 1.9 Angstrom Resolution
 pdb|2O5F|B Chain B, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
           At 1.9 Angstrom Resolution
          Length = 171

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 7/105 (6%)

Query: 2   AVLVQKILYATLFLALISETMSQPEQGPCP---PETLDISQKETGNIVQGKKEFAVEVFN 58
           A+  +++     FL      +  P + P     P  LD+S    G  VQ  + +  E F 
Sbjct: 28  ALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVS---VGGAVQSGETYE-EAFR 83

Query: 59  WCKCAQRNVTLDCDGFQTVEKPDPVQMSISGFQCILLQGRDIIPF 103
                + NV +D   ++ +    P Q ++S F C+     D  P 
Sbjct: 84  REAREELNVEIDALSWRPLASFSPFQTTLSSFMCVYELRSDATPI 128


>pdb|2VY7|A Chain A, The 627-Domain From Influenza A Virus Polymerase Pb2
           Subunit
          Length = 157

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 56  VFNWCKCAQRNVTLDCDGFQTVEKPDPVQMSISGFQCILLQG 97
           VFN+ K  +R   L  D    +E PD    S SG +  +L+G
Sbjct: 119 VFNYNKTTKRLTILGKDAGTLIEDPDE---STSGVESAVLRG 157


>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
          Length = 525

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 30  CPPETLDISQKETGNIVQGKKEFAVEVF-NWCKCAQRNVTLDCD----GFQTVEKPDP 82
           C P T D +  E G I  G  +F+V +    C+C        CD    GF  +   DP
Sbjct: 378 CEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDP 435


>pdb|3LB6|B Chain B, The Structure Of Il-13 In Complex With Il-13ralpha2
          Length = 132

 Score = 26.2 bits (56), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 28 GPCPPET---------LDISQKETGNIVQGKKEFAVEVFNWCKCAQRNVTLDCDGFQTVE 78
          GP PP T         ++I+Q +   +  G   +++ +     CA     ++  G   +E
Sbjct: 21 GPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGMYCAALESLINVSGCSAIE 80

Query: 79 KPDPVQMSISGF 90
          K    Q  +SGF
Sbjct: 81 K---TQRMLSGF 89


>pdb|3LB6|A Chain A, The Structure Of Il-13 In Complex With Il-13ralpha2
          Length = 132

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 28 GPCPPET---------LDISQKETGNIVQGKKEFAVEVFNWCKCAQRNVTLDCDGFQTVE 78
          GP PP T         ++I+Q +   +  G   +++ +     CA     ++  G   +E
Sbjct: 21 GPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGMYCAALESLINVSGCSAIE 80

Query: 79 KPDPVQMSISGF 90
          K    Q  +SGF
Sbjct: 81 K---TQRMLSGF 89


>pdb|1IJZ|A Chain A, Solution Structure Of Human Il-13
 pdb|1IK0|A Chain A, Solution Structure Of Human Il-13
 pdb|3G6D|A Chain A, Crystal Structure Of The Complex Between Cnto607 Fab And
          Il-13
 pdb|3L5W|I Chain I, Crystal Structure Of The Complex Between Il-13 And C836
          Fab
 pdb|3L5W|J Chain J, Crystal Structure Of The Complex Between Il-13 And C836
          Fab
 pdb|3L5X|A Chain A, Crystal Structure Of The Complex Between Il-13 And H2l6
          Fab
 pdb|3L5Y|A Chain A, Crystal Structure Of The Complex Between Il-13 And M1295
          Fab
          Length = 113

 Score = 25.4 bits (54), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 28 GPCPPET---------LDISQKETGNIVQGKKEFAVEVFNWCKCAQRNVTLDCDGFQTVE 78
          GP PP T         ++I+Q +   +  G   +++ +     CA     ++  G   +E
Sbjct: 2  GPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGMYCAALESLINVSGCSAIE 61

Query: 79 KPDPVQMSISGF 90
          K    Q  +SGF
Sbjct: 62 K---TQRMLSGF 70


>pdb|4I77|Z Chain Z, Lebrikizumab Fab Bound To Il-13
          Length = 112

 Score = 25.4 bits (54), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 28 GPCPPET---------LDISQKETGNIVQGKKEFAVEVFNWCKCAQRNVTLDCDGFQTVE 78
          GP PP T         ++I+Q +   +  G   +++ +     CA     ++  G   +E
Sbjct: 1  GPVPPSTALRELIEELVNITQNQKAPLCNGSMVWSINLTAGMYCAALESLINVSGCSAIE 60

Query: 79 KPDPVQMSISGF 90
          K    Q  +SGF
Sbjct: 61 K---TQRMLSGF 69


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,851,679
Number of Sequences: 62578
Number of extensions: 141964
Number of successful extensions: 189
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 11
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)