BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045282
         (130 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana
           GN=At1g05835 PE=2 SV=1
          Length = 127

 Score = 35.0 bits (79), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 50  KEFAVEVFNWC-KCAQRNVTLDCDGF-QTVEKPDPVQ-MSISGFQCILLQGRDIIPFSRV 106
           K+F VEV N C  C   N+ L C GF Q++  P  ++ +S S   C++  G  + P   +
Sbjct: 46  KKFRVEVMNKCPMCPIINLRLKCQGFPQSLVDPTFLRVLSSSAGNCVVNDGLPLSPMQTL 105

Query: 107 HFKYAFDDEFPFYVFS 122
            F Y+   +F     S
Sbjct: 106 SFNYSNTHQFALRPLS 121


>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella
           zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
           31084) GN=PRP5 PE=3 SV=2
          Length = 1207

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 33  ETLDISQKETGNIVQGKKEFAVEVFNWCKCAQRNVTLDCDGFQTVEKPDPVQMSISGFQC 92
           E  D+  +  G  V GK +    V  W +C     TLD       EKP P+QM       
Sbjct: 554 EVADLRLELDGIKVNGK-DVPKPVQKWAQCGLTRQTLDVVDNLGYEKPTPIQMQALP--- 609

Query: 93  ILLQGRDIIPFSR 105
            L+ GRD+I  ++
Sbjct: 610 ALMSGRDVIGVAK 622


>sp|A0MD28|RPOA_PRRSS Replicase polyprotein 1ab OS=Porcine reproductive and respiratory
            syndrome virus (isolate Pig/United States/SD 01-08/2001)
            PE=1 SV=2
          Length = 3838

 Score = 29.6 bits (65), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 51   EFAVEVFNWCKCAQRNVTLDCDGFQTVEKPDPVQMSISGFQC 92
            E A+ VF + +  + ++T  CD FQT +  DPV ++     C
Sbjct: 1274 EVALNVFPFSRATRNSLTSLCDRFQTPKGVDPVHLATGWRGC 1315


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,120,537
Number of Sequences: 539616
Number of extensions: 1834449
Number of successful extensions: 3024
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3023
Number of HSP's gapped (non-prelim): 3
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)