Query 045282
Match_columns 130
No_of_seqs 106 out of 133
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 20:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e8v_A Possible transglutamina 36.5 21 0.00072 23.8 2.3 21 95-116 10-30 (82)
2 3idu_A Uncharacterized protein 36.4 1.1E+02 0.0037 21.4 7.4 69 31-114 15-84 (127)
3 2jv2_A Putative uncharacterize 36.1 27 0.00094 23.0 2.8 30 96-126 38-67 (83)
4 1b4r_A Protein (PKD1_human); P 26.8 30 0.001 22.5 1.7 11 99-109 9-19 (80)
5 3rfr_A PMOB; membrane, oxidore 24.3 2E+02 0.0069 24.5 6.7 62 43-109 293-363 (419)
6 3vhs_A ATPase wrnip1; zinc fin 22.0 24 0.00081 19.1 0.4 8 48-55 1-8 (29)
7 3f9x_A Histone-lysine N-methyl 21.9 30 0.001 24.3 1.0 22 94-115 134-155 (166)
8 2l0d_A Cell surface protein; s 21.5 2E+02 0.0069 19.6 8.0 66 32-115 2-72 (114)
9 3d30_A YOAJ, expansin like pro 19.6 34 0.0012 25.8 1.0 37 52-88 65-102 (208)
10 2cxk_A Camta1, calmodulin bind 19.2 2.1E+02 0.007 18.8 5.1 22 90-113 70-91 (95)
No 1
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=36.49 E-value=21 Score=23.82 Aligned_cols=21 Identities=29% Similarity=0.346 Sum_probs=17.2
Q ss_pred eCCcccCCCCeEEEEEccCCcc
Q 045282 95 LQGRDIIPFSRVHFKYAFDDEF 116 (130)
Q Consensus 95 n~G~pi~~g~~v~F~YAw~~~f 116 (130)
.+|+|++ |..|.|+|-|...|
T Consensus 10 ~~GkPV~-gA~Vefe~yNyae~ 30 (82)
T 3e8v_A 10 AEGQPVA-DATVEFKVYNYAEF 30 (82)
T ss_dssp TTSCBCT-TCEEEEEEEETTEE
T ss_pred CCCCCCC-CCEEEEEEEEchhe
Confidence 5799995 78999999987655
No 2
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=36.44 E-value=1.1e+02 Score=21.36 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=40.5
Q ss_pred CCCcceEEEeeecCccCCee-eEEEEEeeccccccceEEEecCCccccccCCCcceeEeCCeeEEeCCcccCCCCeEEEE
Q 045282 31 PPETLDISQKETGNIVQGKK-EFAVEVFNWCKCAQRNVTLDCDGFQTVEKPDPVQMSISGFQCILLQGRDIIPFSRVHFK 109 (130)
Q Consensus 31 ~~~di~V~Q~~tg~~v~G~p-e~~VtI~N~C~C~~~~V~l~C~gF~S~~~VDP~ifr~~~~~CLVn~G~pi~~g~~v~F~ 109 (130)
.+.|+.|.-..-.....|++ ++.|+|.|.=..+..+..|.-- +|=.+.. .....|.+|++-+|.
T Consensus 15 ~~pDL~V~is~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~ly-------vng~~v~--------t~~v~La~G~s~tv~ 79 (127)
T 3idu_A 15 EFPDLTVEIKGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVY-------INGTLYK--------NWTVSLGPKEEKVLT 79 (127)
T ss_dssp SSCCEEEEEESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEE-------ETTEEEE--------EEEEEECTTCEEEEE
T ss_pred cCCCeEEEecCCCcccCCCEEEEEEEEEECCCCccCCcEEEEE-------ECCEEEe--------eEEeccCCCCeEEEE
Confidence 46788884433333333544 5999999998777666665431 1222111 112258899987777
Q ss_pred EccCC
Q 045282 110 YAFDD 114 (130)
Q Consensus 110 YAw~~ 114 (130)
|.|..
T Consensus 80 f~~~~ 84 (127)
T 3idu_A 80 FNWTP 84 (127)
T ss_dssp EEECC
T ss_pred EEEEc
Confidence 77753
No 3
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=36.07 E-value=27 Score=22.99 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=23.3
Q ss_pred CCcccCCCCeEEEEEccCCccCeEeeeeecc
Q 045282 96 QGRDIIPFSRVHFKYAFDDEFPFYVFSSAPI 126 (130)
Q Consensus 96 ~G~pi~~g~~v~F~YAw~~~f~~~p~ss~~~ 126 (130)
.|+|+..|+.|+...-. ..++|.+++..+.
T Consensus 38 ~grPV~~GD~I~i~~~G-~~i~F~Vv~t~P~ 67 (83)
T 2jv2_A 38 QGKTVRTGDVIGISILG-KEVKFKVVQAYPS 67 (83)
T ss_dssp TTSEECTTCEEEEEETT-EEEEEEEEEEESS
T ss_pred CCCCccCCCEEEEeeCC-CEEEEEEEEecCc
Confidence 35899999999987544 7788888877653
No 4
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=26.77 E-value=30 Score=22.51 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=4.8
Q ss_pred ccCCCCeEEEE
Q 045282 99 DIIPFSRVHFK 109 (130)
Q Consensus 99 pi~~g~~v~F~ 109 (130)
|+..|++|.|.
T Consensus 9 ~~~~g~~v~F~ 19 (80)
T 1b4r_A 9 PLASGQLAAFH 19 (80)
T ss_dssp CCBSSEEEEEE
T ss_pred cccCCCeEEEE
Confidence 44444444443
No 5
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=24.27 E-value=2e+02 Score=24.47 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=39.1
Q ss_pred cCccCCeeeEEEEEeeccccccceEEEecCCcccc--ccCCCcceeEe--C-CeeEEe----CCcccCCCCeEEEE
Q 045282 43 GNIVQGKKEFAVEVFNWCKCAQRNVTLDCDGFQTV--EKPDPVQMSIS--G-FQCILL----QGRDIIPFSRVHFK 109 (130)
Q Consensus 43 g~~v~G~pe~~VtI~N~C~C~~~~V~l~C~gF~S~--~~VDP~ifr~~--~-~~CLVn----~G~pi~~g~~v~F~ 109 (130)
=++++.--++.++|+|+=.=++ +| +.|+++ .=+||+++.-. + ++-+.+ +..||.||++-+++
T Consensus 293 Y~vpgR~l~~~~~VtN~g~~pv---rl--geF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~s~~pI~PGETrt~~ 363 (419)
T 3rfr_A 293 YKVPGRELTINVKVKNGTSQPV---RL--GEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLSNDDVIAPGESKEIV 363 (419)
T ss_dssp EESSSSEEEEEEEEECCSSSCB---EE--EEEECSSCEEECTTTCSSCCCCCTTTEESCCCCCCCCBCTTCEEEEE
T ss_pred EecCCcEEEEEEEEecCCCCce---EE--eeEEEccEEEeCcccccCCCCCchhhhhccCCCCCCCcCCCcceEEE
Confidence 4556778899999999875444 33 455543 55677775533 1 322222 33399999997774
No 6
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.96 E-value=24 Score=19.06 Aligned_cols=8 Identities=50% Similarity=0.899 Sum_probs=3.3
Q ss_pred CeeeEEEE
Q 045282 48 GKKEFAVE 55 (130)
Q Consensus 48 G~pe~~Vt 55 (130)
|.|||+|+
T Consensus 1 gspef~vq 8 (29)
T 3vhs_A 1 GSPEFQVQ 8 (29)
T ss_dssp ----CEEE
T ss_pred CCCceeee
Confidence 56899886
No 7
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=21.89 E-value=30 Score=24.34 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.1
Q ss_pred EeCCcccCCCCeEEEEEccCCc
Q 045282 94 LLQGRDIIPFSRVHFKYAFDDE 115 (130)
Q Consensus 94 Vn~G~pi~~g~~v~F~YAw~~~ 115 (130)
+-.-++|.+|+.++|.|.++..
T Consensus 134 ~~A~rdI~~GEELt~dY~~~~~ 155 (166)
T 3f9x_A 134 LIASRDIAAGEELLFDYGDRSK 155 (166)
T ss_dssp EEESSCBCTTCBCEECCCCCCH
T ss_pred EEECCcCCCCCEEEEEcCCChh
Confidence 3456899999999999998753
No 8
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=21.46 E-value=2e+02 Score=19.63 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=35.7
Q ss_pred CCcceEEEeeecCcc-CCeeeEEEEEeeccc-cc-cceEEEecCCccccccCCCcceeEeCCeeEEeC--CcccCCCCeE
Q 045282 32 PETLDISQKETGNIV-QGKKEFAVEVFNWCK-CA-QRNVTLDCDGFQTVEKPDPVQMSISGFQCILLQ--GRDIIPFSRV 106 (130)
Q Consensus 32 ~~di~V~Q~~tg~~v-~G~pe~~VtI~N~C~-C~-~~~V~l~C~gF~S~~~VDP~ifr~~~~~CLVn~--G~pi~~g~~v 106 (130)
+.||.|+...-...+ +..-.+.|+|.|.=. .+ ...|.|.=+| . +|.. ...|..|.+.
T Consensus 2 ~PDL~vt~itP~~~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~g----------------~--~v~t~~v~~LaaG~s~ 63 (114)
T 2l0d_A 2 IPDLVPVSLTPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDG----------------I--VVDTQTVTSLESENST 63 (114)
T ss_dssp CCCEEEEEEECSEECTTSEEEEEEEEEECSSSCBCCEEEEEEETT----------------E--EEEEEEESCBCBTCEE
T ss_pred CCCcEEEeccCCCcCCCCeEEEEEEEEECCCCCCCCEEEEEEECC----------------E--EEcceecccccCCCEE
Confidence 357777765222233 345569999999873 22 2233322222 1 2211 1247788887
Q ss_pred EEEEccCCc
Q 045282 107 HFKYAFDDE 115 (130)
Q Consensus 107 ~F~YAw~~~ 115 (130)
++.|.|...
T Consensus 64 tv~~~w~~~ 72 (114)
T 2l0d_A 64 NVDFHWTLD 72 (114)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEeec
Confidence 777777643
No 9
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=19.61 E-value=34 Score=25.80 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=29.3
Q ss_pred EEEEEeecc-ccccceEEEecCCccccccCCCcceeEe
Q 045282 52 FAVEVFNWC-KCAQRNVTLDCDGFQTVEKPDPVQMSIS 88 (130)
Q Consensus 52 ~~VtI~N~C-~C~~~~V~l~C~gF~S~~~VDP~ifr~~ 88 (130)
=.|+|++.| .|+..++-|+=.-|..-...+..++.+.
T Consensus 65 v~V~v~D~CP~C~~~~~DLS~~aF~~la~~~~G~i~v~ 102 (208)
T 3d30_A 65 TTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIK 102 (208)
T ss_dssp EEEEEEEECTTCCTTCEEECHHHHHHHSCGGGSSEEEE
T ss_pred EEEEEEECCCCCCCCeEECCHHHHHHhcccCCCEEEEE
Confidence 579999999 5999999999888876555566666655
No 10
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=19.17 E-value=2.1e+02 Score=18.83 Aligned_cols=22 Identities=18% Similarity=0.194 Sum_probs=17.7
Q ss_pred CeeEEeCCcccCCCCeEEEEEccC
Q 045282 90 FQCILLQGRDIIPFSRVHFKYAFD 113 (130)
Q Consensus 90 ~~CLVn~G~pi~~g~~v~F~YAw~ 113 (130)
..++.-||+++ .+...|+|.-+
T Consensus 70 ~~~v~~d~~~~--s~~~~FeY~~~ 91 (95)
T 2cxk_A 70 TLQVAFNNQII--SNSVVFEYKSG 91 (95)
T ss_dssp EEEEEETTEEC--SCCEEEEECCC
T ss_pred eEEEEECCeec--CCceEEEEeCC
Confidence 56899999987 46889999754
Done!