Query 045282
Match_columns 130
No_of_seqs 106 out of 133
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 20:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045282.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045282hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gu3a1 d.17.1.6 (A:99-161) Un 36.9 19 0.0013 21.4 3.5 25 35-60 18-42 (63)
2 d1b4ra_ b.1.3.1 (A:) Polycyste 32.3 10 0.00073 23.2 1.7 16 94-109 4-19 (80)
3 d1f3ub_ b.65.1.1 (B:) TFIIF al 27.6 13 0.00096 25.5 1.9 39 43-86 1-39 (149)
4 d1neia_ d.253.1.1 (A:) Hypothe 27.6 13 0.00095 22.0 1.6 13 48-60 2-14 (60)
5 d1p65a_ d.254.1.1 (A:) Arteriv 26.5 22 0.0016 20.6 2.5 21 9-34 13-33 (57)
6 d1v43a2 b.40.6.3 (A:304-373) H 16.6 50 0.0036 18.4 2.7 31 92-122 35-65 (70)
7 d1cr5a2 d.31.1.1 (A:108-210) C 15.6 55 0.004 20.7 2.9 28 96-124 41-68 (103)
8 d1f00i1 b.1.14.1 (I:658-752) I 15.0 49 0.0036 20.2 2.5 19 93-112 27-45 (95)
9 d1skza1 g.3.15.1 (A:7-58) Fact 13.5 9.8 0.00071 21.6 -1.3 21 56-76 16-37 (52)
10 d3brda3 b.42.7.1 (A:381-541) D 12.3 1.2E+02 0.0091 20.7 4.2 49 61-113 69-123 (161)
No 1
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=36.93 E-value=19 Score=21.36 Aligned_cols=25 Identities=4% Similarity=-0.154 Sum_probs=18.7
Q ss_pred ceEEEeeecCccCCeeeEEEEEeecc
Q 045282 35 LDISQKETGNIVQGKKEFAVEVFNWC 60 (130)
Q Consensus 35 i~V~Q~~tg~~v~G~pe~~VtI~N~C 60 (130)
-.|...+-| +.+|+|.|+|+-.|.=
T Consensus 18 ~ki~~v~LG-~~~~~pvWEVtY~~~~ 42 (63)
T d2gu3a1 18 SKQKEVHLA-REGNVLLWEVTYLDKE 42 (63)
T ss_dssp SEEEEEEEE-EETTEEEEEEEEECTT
T ss_pred ceeeEEeee-eECCEEEEEEEEEeCC
Confidence 345556667 5789999999998753
No 2
>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.27 E-value=10 Score=23.15 Aligned_cols=16 Identities=6% Similarity=-0.076 Sum_probs=8.9
Q ss_pred EeCCcccCCCCeEEEE
Q 045282 94 LLQGRDIIPFSRVHFK 109 (130)
Q Consensus 94 Vn~G~pi~~g~~v~F~ 109 (130)
+..-.||..|+++.|.
T Consensus 4 ~~p~~p~~~G~~v~F~ 19 (80)
T d1b4ra_ 4 VGPHGPLASGQLAAFH 19 (80)
T ss_dssp ECCCSCCBSSEEEEEE
T ss_pred ecCCCCccCCCeEEEE
Confidence 3344456666666665
No 3
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.65 E-value=13 Score=25.50 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=31.5
Q ss_pred cCccCCeeeEEEEEeeccccccceEEEecCCccccccCCCccee
Q 045282 43 GNIVQGKKEFAVEVFNWCKCAQRNVTLDCDGFQTVEKPDPVQMS 86 (130)
Q Consensus 43 g~~v~G~pe~~VtI~N~C~C~~~~V~l~C~gF~S~~~VDP~ifr 86 (130)
|...+++.||.|.|..+ .+++-+=.-|+|..+|||+.-+
T Consensus 1 ~~~~~~v~Ey~vrv~k~-----~~kky~vmrF~s~~~VD~~~~~ 39 (149)
T d1f3ub_ 1 GPSSQNVTEYVVRVPKN-----TTKKYNIMAFNAADKVNFATWN 39 (149)
T ss_dssp CCSCCEEEEEEEECCSC-----CSEEEEEEEECGGGCCCGGGCS
T ss_pred CCCCCCcEEEEEEecCC-----CCceEEEEEecCCCCCChhhCc
Confidence 34567889999999775 5778888899999999998755
No 4
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=27.61 E-value=13 Score=21.96 Aligned_cols=13 Identities=38% Similarity=0.509 Sum_probs=11.3
Q ss_pred CeeeEEEEEeecc
Q 045282 48 GKKEFAVEVFNWC 60 (130)
Q Consensus 48 G~pe~~VtI~N~C 60 (130)
|+-.|.|||+|+-
T Consensus 2 gk~~~~lTvTNnn 14 (60)
T d1neia_ 2 GKATYTVTVTNNS 14 (60)
T ss_dssp CCCCEEEEEEETT
T ss_pred CcceEEEEEEeCC
Confidence 6788999999976
No 5
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344]}
Probab=26.55 E-value=22 Score=20.62 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhccCCCCCCCCCCCCc
Q 045282 9 LYATLFLALISETMSQPEQGPCPPET 34 (130)
Q Consensus 9 l~~~lfl~lv~~g~~~~~~~~C~~~d 34 (130)
|++.-.....+|| .|.|+++|
T Consensus 13 lcl~siqtafNQG-----aG~~~Ls~ 33 (57)
T d1p65a_ 13 LCLSSIQTAFNQG-----AGTCTLSD 33 (57)
T ss_dssp HHHHHHHHHHHHT-----CSEEEECT
T ss_pred HHHHHHHHHHhCC-----CceEEEec
Confidence 3344445677899 89999886
No 6
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=16.58 E-value=50 Score=18.40 Aligned_cols=31 Identities=19% Similarity=-0.018 Sum_probs=24.3
Q ss_pred eEEeCCcccCCCCeEEEEEccCCccCeEeee
Q 045282 92 CILLQGRDIIPFSRVHFKYAFDDEFPFYVFS 122 (130)
Q Consensus 92 CLVn~G~pi~~g~~v~F~YAw~~~f~~~p~s 122 (130)
..+.+..++..|++|.|....+.-+-|.+.+
T Consensus 35 ~~~~~~~~~~~g~~i~l~~d~~~~~lFD~~t 65 (70)
T d1v43a2 35 VKLPGHIPIEPGREVKVIMDLDMIHVFDKDT 65 (70)
T ss_dssp EEEESCCCCCTTCEEEEEEEGGGCEEEETTT
T ss_pred EEECCCCCCCCCCEEEEEECcccEEEEcchh
Confidence 5566677888999999999988877776643
No 7
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=15.58 E-value=55 Score=20.66 Aligned_cols=28 Identities=7% Similarity=0.088 Sum_probs=23.1
Q ss_pred CCcccCCCCeEEEEEccCCccCeEeeeee
Q 045282 96 QGRDIIPFSRVHFKYAFDDEFPFYVFSSA 124 (130)
Q Consensus 96 ~G~pi~~g~~v~F~YAw~~~f~~~p~ss~ 124 (130)
.|+++.+|+.+.|.|-. ..|.|++.+..
T Consensus 41 ~~Q~ft~gQ~l~f~f~~-~~l~l~Vk~v~ 68 (103)
T d1cr5a2 41 ESQIFSPTQYLIMEFQG-HFFDLKIRNVQ 68 (103)
T ss_dssp TTCEECTTCEEEEEETT-EEEEEEEEEEE
T ss_pred cCCCCCCCcEEEEEECC-cEEEEEEEEEE
Confidence 57899999999999976 78888886553
No 8
>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]}
Probab=15.04 E-value=49 Score=20.24 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=14.2
Q ss_pred EEeCCcccCCCCeEEEEEcc
Q 045282 93 ILLQGRDIIPFSRVHFKYAF 112 (130)
Q Consensus 93 LVn~G~pi~~g~~v~F~YAw 112 (130)
+..+|+|| +|.+|.|.-..
T Consensus 27 v~D~gnpv-~g~~V~~~~~~ 45 (95)
T d1f00i1 27 VMKGDKPV-SNQEVTFTTTL 45 (95)
T ss_dssp EEETTEEC-TTCEEEEEESS
T ss_pred EEECCccc-CCcEEEEEECC
Confidence 34568999 58999998654
No 9
>d1skza1 g.3.15.1 (A:7-58) Factor Xa inhibitor antistasin {Mexican leech (Haementeria officinalis) [TaxId: 6410]}
Probab=13.52 E-value=9.8 Score=21.56 Aligned_cols=21 Identities=29% Similarity=0.841 Sum_probs=14.0
Q ss_pred EeeccccccceEEEec-CCccc
Q 045282 56 VFNWCKCAQRNVTLDC-DGFQT 76 (130)
Q Consensus 56 I~N~C~C~~~~V~l~C-~gF~S 76 (130)
|+.+|.|.--.-++.| -|||-
T Consensus 16 itdrctcsgvrcrvhcphgfqr 37 (52)
T d1skza1 16 ITDRCTCSGVRCRVHCPHGFQR 37 (52)
T ss_dssp TTCSSCBCCCSSCCCCTTCEEE
T ss_pred eccceeeccceEEEECCCcccc
Confidence 4566777766667777 56664
No 10
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=12.28 E-value=1.2e+02 Score=20.72 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=34.9
Q ss_pred ccccceEEEec--CCccccccCCCcceeEeCCeeE-EeC---CcccCCCCeEEEEEccC
Q 045282 61 KCAQRNVTLDC--DGFQTVEKPDPVQMSISGFQCI-LLQ---GRDIIPFSRVHFKYAFD 113 (130)
Q Consensus 61 ~C~~~~V~l~C--~gF~S~~~VDP~ifr~~~~~CL-Vn~---G~pi~~g~~v~F~YAw~ 113 (130)
.|.-+-|+|-| .|.+ .+|-++|+-+.+.. +.+ +.|+..-..+.|+--.+
T Consensus 69 I~Ygs~V~Lv~~~TGv~----sppLiIRKVdk~~~~ld~~~~ddpVSQLhK~Af~~~dt 123 (161)
T d3brda3 69 VYYGSVVKLVDSVTGIA----LPRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMIDN 123 (161)
T ss_dssp CBTTCEEEEEETTTCCB----CCCEEEEEEETTEEECCTTGGGSBCBTTEEEEEEESSC
T ss_pred EEeCCEEEEEEcCCCcc----CCCEEEEEEcCCeEeccCccCCCcHHhhheeEEEcCCC
Confidence 47777889999 4554 47889998764444 444 37999999999976433
Done!