BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045287
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 48 YCRAIDIITRNCWPAMLTSLGFTAEEGNILRG 79
+ + +D+++ + +P+M T FTA N++RG
Sbjct: 265 WAKEMDVVSWDNYPSMDTPFSFTAMAHNLMRG 296
>pdb|1CP9|A Chain A, Crystal Structure Of Penicillin G Acylase From The Bro1
Mutant Strain Of Providencia Rettgeri
Length = 205
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 45 GPDYCRAIDIITRNCWPAMLTSL--GFTAEEGNILRGYCDASSA 86
G DY I N WP + ++E +ILRGY D +A
Sbjct: 57 GKDYISFDKEIRNNYWPDSIHKQINQLPSQEQDILRGYADGMNA 100
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 49 CRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCD 82
C+ D++T + W TS+GF AE R + D
Sbjct: 214 CKGADLVTTDVW----TSMGFEAENEARKRAFAD 243
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 26.2 bits (56), Expect = 4.6, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 42 ADIGPDYCRAIDIITRNCWPAMLTSLGFTAEEG 74
A + P D + CWPA+ ++G A E
Sbjct: 1089 APLAPTLTVVPDALVGRCWPAVFAAIGSAATEA 1121
>pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
pdb|2X50|B Chain B, Crystal Structure Of Trypanothione Reductase From
Leishmania Infantum In Complex With Nadph And Silver
Length = 510
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 2 RIYDLVIRLEVSGGLTECWNTLMELKSCSNEIVIFFLNSQADIGPDYCRAI--DIITRNC 59
R YDLV+ SGGL WN + +++ + ++ QA GP A+ + C
Sbjct: 23 RAYDLVVLGAGSGGLEAGWNA-----AVTHKKKVAVVDVQATHGPPLFAALGGTCVNVGC 77
Query: 60 WPAMLTSLG 68
P L G
Sbjct: 78 VPKKLMVTG 86
>pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2JK6|B Chain B, Structure Of Trypanothione Reductase From Leishmania
Infantum
pdb|2W0H|A Chain A, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2W0H|B Chain B, X Ray Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Antimony And Nadph
pdb|2YAU|A Chain A, X-Ray Structure Of The Leishmania Infantum
Tryopanothione Reductase In Complex With Auranofin
pdb|2YAU|B Chain B, X-Ray Structure Of The Leishmania Infantum
Tryopanothione Reductase In Complex With Auranofin
pdb|4ADW|A Chain A, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
pdb|4ADW|B Chain B, Crystal Structure Of Leishmania Infantum Trypanothione
Reductase In Complex With Nadph And Trypanothione
Length = 511
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 7/69 (10%)
Query: 2 RIYDLVIRLEVSGGLTECWNTLMELKSCSNEIVIFFLNSQADIGPDYCRAI--DIITRNC 59
R YDLV+ SGGL WN + +++ + ++ QA GP A+ + C
Sbjct: 23 RAYDLVVLGAGSGGLEAGWNA-----AVTHKKKVAVVDVQATHGPPLFAALGGTCVNVGC 77
Query: 60 WPAMLTSLG 68
P L G
Sbjct: 78 VPKKLMVTG 86
>pdb|1VEH|A Chain A, Solution Structure Of Rsgi Ruh-018, A Nifu-Like Domain
Of Hirip5 Protein From Mouse Cdna
Length = 92
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 5 DLVIRLEVSGGLTECWNTLMELKSCSNEIVIFFL 38
D ++RL++ G T C ++++ LKS ++ F++
Sbjct: 44 DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYI 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,953,868
Number of Sequences: 62578
Number of extensions: 99590
Number of successful extensions: 258
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 254
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)