Query 045287
Match_columns 104
No_of_seqs 91 out of 93
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 11:42:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045287.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045287hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00213 predicted protein; Pr 100.0 6.3E-30 1.4E-34 184.0 5.1 73 14-91 43-116 (118)
2 PF05617 Prolamin_like: Prolam 99.8 2.4E-21 5.3E-26 124.0 4.5 64 18-82 1-70 (70)
3 PLN00214 putative protein; Pro 78.9 1.7 3.7E-05 31.7 2.2 40 27-68 45-88 (115)
4 smart00499 AAI Plant lipid tra 36.1 17 0.00037 21.7 0.7 39 19-62 1-43 (79)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 30.5 45 0.00099 20.0 2.0 21 37-57 7-28 (63)
6 cd04660 nsLTP_like nsLTP_like: 29.3 37 0.00081 21.5 1.5 18 44-61 24-41 (73)
7 cd01960 nsLTP1 nsLTP1: Non-spe 28.6 45 0.00098 21.7 1.8 34 19-57 3-37 (89)
8 cd07456 CRD_FZ5_like Cysteine- 28.3 49 0.0011 23.6 2.1 50 20-72 39-97 (120)
9 COG2406 Protein distantly rela 24.1 52 0.0011 25.5 1.7 38 4-41 67-116 (172)
10 PF15331 TP53IP5: Cellular tum 23.9 48 0.001 26.6 1.5 11 18-28 42-52 (220)
No 1
>PLN00213 predicted protein; Provisional
Probab=99.96 E-value=6.3e-30 Score=184.01 Aligned_cols=73 Identities=23% Similarity=0.557 Sum_probs=67.3
Q ss_pred CCcchhhhhhccCcchHHHHHHHHHhCccc-cCccchHHHHHhhhcccchhhccCCCCchhhhHHhhccccCCCCCCCc
Q 045287 14 GGLTECWNTLMELKSCSNEIVIFFLNSQAD-IGPDYCRAIDIITRNCWPAMLTSLGFTAEEGNILRGYCDASSAPSPGG 91 (104)
Q Consensus 14 ~~~~~CWsSl~~v~gC~~EI~~~~lnG~~~-IGp~CCkAi~~I~~~CWP~mfps~pf~~~e~~~LKg~C~~~~~~~P~~ 91 (104)
.|+.||||||++++||+.||++++++||++ ||++|||||++++ +|||+| |++||||+ +||++|++++..+|+.
T Consensus 43 pd~~kCwSSl~~vpGCv~EI~~si~~gkf~~Ig~aCCKAf~~~d-nCwP~~-P~~P~fPp---~LK~~Cs~i~~~~~~~ 116 (118)
T PLN00213 43 PDITKCFSSVMDIPGCIAEISQSIFTGKFGNLGPACCKAFLDAD-NCIPKI-PFIPFFPP---MLKEQCSRVAGATPPI 116 (118)
T ss_pred ccHHHHHHHHcCCcchHHHHHHHHHhchhcccchHHHHHHHhhh-ccccCC-cCCCccch---HHHHHHhcccCCCCCC
Confidence 488999999999999999999999999997 9999999999966 999996 99999999 9999999997555543
No 2
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=99.84 E-value=2.4e-21 Score=124.01 Aligned_cols=64 Identities=30% Similarity=0.696 Sum_probs=56.5
Q ss_pred hhhhhhccCcchHHHHHHHHHhCcc-ccCccchHHHHHhhhcccch---hhccCCCCch--hhhHHhhccc
Q 045287 18 ECWNTLMELKSCSNEIVIFFLNSQA-DIGPDYCRAIDIITRNCWPA---MLTSLGFTAE--EGNILRGYCD 82 (104)
Q Consensus 18 ~CWsSl~~v~gC~~EI~~~~lnG~~-~IGp~CCkAi~~I~~~CWP~---mfps~pf~~~--e~~~LKg~C~ 82 (104)
|||++++++++|..||+.+|++|+. .||++||+||+.++++|||. ||++.|++++ + ++|+++|+
T Consensus 1 kc~~~~~~~~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~~C~~~l~~~~~~~p~~~~~~r-~~l~~~C~ 70 (70)
T PF05617_consen 1 KCLSSCAKSPGCGDEIFNSFFNGNKKNIGPECCKAINKMGKDCHPALFKMFPFTPFFKPLLR-DLLWNHCS 70 (70)
T ss_pred ChHHHcCCccchHHHHHHHHHcCCCCCCChHHHHHHHHHhHhHHHHHHHHccCCCCccchhH-HHHHhhcC
Confidence 6999999999999999999999995 59999999999999999999 5556666554 4 49999996
No 3
>PLN00214 putative protein; Provisional
Probab=78.89 E-value=1.7 Score=31.69 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=32.6
Q ss_pred cchHHHHHHHHH-hCccccCccchHHHHHhhhcc---cchhhccCC
Q 045287 27 KSCSNEIVIFFL-NSQADIGPDYCRAIDIITRNC---WPAMLTSLG 68 (104)
Q Consensus 27 ~gC~~EI~~~~l-nG~~~IGp~CCkAi~~I~~~C---WP~mfps~p 68 (104)
+-|..||+..++ ||. +...||+-+...+.+| |=+++.+.|
T Consensus 45 ~KCa~EI~a~i~~N~t--~s~~CC~~LVk~GK~CH~~LiK~i~~~p 88 (115)
T PLN00214 45 PKCALDIIAVVFENGT--LIDPCCNDLVKEGKVCHDTLIKYIADKP 88 (115)
T ss_pred HhhHHHHHHHHHcCCC--CchHHHHHHHHHhhHHHHHHHHHHHcch
Confidence 669999999999 666 5899999999999999 555555433
No 4
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=36.05 E-value=17 Score=21.68 Aligned_cols=39 Identities=21% Similarity=0.437 Sum_probs=24.5
Q ss_pred hhhhhccCcchHHHHHHHHHhCc---cccCccchHHHHHh-hhcccch
Q 045287 19 CWNTLMELKSCSNEIVIFFLNSQ---ADIGPDYCRAIDII-TRNCWPA 62 (104)
Q Consensus 19 CWsSl~~v~gC~~EI~~~~lnG~---~~IGp~CCkAi~~I-~~~CWP~ 62 (104)
|...+.++.+|..- +++. ......||.++..+ ...|.=.
T Consensus 1 C~~~~~~~~~c~~~-----~~~~~~~~~p~~~CC~~l~~~~~~~C~C~ 43 (79)
T smart00499 1 CGQVLLQLAPCLSY-----LTGGSPGAPPSQQCCSQLRGLNSAQCRCL 43 (79)
T ss_pred ChhhhhhHHhhHHH-----HcCCCCCCCCchHHHHHHHHhcccCCcch
Confidence 33444444455443 3333 33778899999999 8888654
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=30.46 E-value=45 Score=19.96 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=15.6
Q ss_pred HHhCcc-ccCccchHHHHHhhh
Q 045287 37 FLNSQA-DIGPDYCRAIDIITR 57 (104)
Q Consensus 37 ~lnG~~-~IGp~CCkAi~~I~~ 57 (104)
+++|.. .-.+.||.+++.+.+
T Consensus 7 y~~~~~~~Ps~~CC~~l~~~~~ 28 (63)
T cd00010 7 YLTGGATAPPSDCCSGLKSVVK 28 (63)
T ss_pred HHcCCCCCCChHHHHHHHHHHh
Confidence 345553 488899999999964
No 6
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=29.27 E-value=37 Score=21.55 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.5
Q ss_pred cCccchHHHHHhhhcccc
Q 045287 44 IGPDYCRAIDIITRNCWP 61 (104)
Q Consensus 44 IGp~CCkAi~~I~~~CWP 61 (104)
-..+||.+|+.++..|-=
T Consensus 24 Ps~~CC~~vk~~~~~C~C 41 (73)
T cd04660 24 PSRECCAALRRADLPCLC 41 (73)
T ss_pred CCHHHHHHHHcCCcCCEe
Confidence 667899999988767753
No 7
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=28.65 E-value=45 Score=21.68 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=22.8
Q ss_pred hhhhhccCcchHHHHHHHHHhCccc-cCccchHHHHHhhh
Q 045287 19 CWNTLMELKSCSNEIVIFFLNSQAD-IGPDYCRAIDIITR 57 (104)
Q Consensus 19 CWsSl~~v~gC~~EI~~~~lnG~~~-IGp~CCkAi~~I~~ 57 (104)
|=..+..+..|..= ++|... -.+.||.++..+..
T Consensus 3 C~~v~~~l~~C~~y-----~~g~~~~Ps~~CC~~v~~l~~ 37 (89)
T cd01960 3 CGQVTSLLAPCLGY-----LTGGGPAPSPACCSGVKSLNG 37 (89)
T ss_pred HHHHHhhHHhHHHH-----HhCCCCCCChHHhhhhHHHhh
Confidence 55556666666543 444444 88999999999753
No 8
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=28.29 E-value=49 Score=23.57 Aligned_cols=50 Identities=26% Similarity=0.450 Sum_probs=35.8
Q ss_pred hhhhccCcchHHHHHHHHH--------hCcc-ccCccchHHHHHhhhcccchhhccCCCCch
Q 045287 20 WNTLMELKSCSNEIVIFFL--------NSQA-DIGPDYCRAIDIITRNCWPAMLTSLGFTAE 72 (104)
Q Consensus 20 WsSl~~v~gC~~EI~~~~l--------nG~~-~IGp~CCkAi~~I~~~CWP~mfps~pf~~~ 72 (104)
|..|.++ +|.-++ ++|+ .++. +.-+.|-.-=..+.+.|+|.| ...+|.++
T Consensus 39 ~~pLv~~-~Csp~l-~~FlCsl~~P~C~~~~~~~i~PCRslCe~vr~~C~~~m-~~~g~~WP 97 (120)
T cd07456 39 FWPLVEI-QCSPDL-KFFLCSMYTPICLEDYDKPLPPCRSVCERARDGCAPIM-RQYGFAWP 97 (120)
T ss_pred HHHHHhC-CCChhH-HHHhHhccCcccCCCCCCcCCccHHHHHHHHHHHHHHH-HHhCCCCC
Confidence 7888886 899885 6666 3333 356788766677778999988 56777655
No 9
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=24.13 E-value=52 Score=25.46 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=31.3
Q ss_pred hhHHHHHH-hCCCcchhhhhhccCcch-----------HHHHHHHHHhCc
Q 045287 4 YDLVIRLE-VSGGLTECWNTLMELKSC-----------SNEIVIFFLNSQ 41 (104)
Q Consensus 4 ~~l~~rl~-~~~~~~~CWsSl~~v~gC-----------~~EI~~~~lnG~ 41 (104)
.-++.||. .|+++-.|..-|.++.|| +.||++..+..+
T Consensus 67 e~i~~Ri~elg~~~Prd~~~l~dISgC~~a~LPedp~D~~~~l~vlv~AE 116 (172)
T COG2406 67 ELIAPRIYELGGDLPRDMKKLHDISGCKPAYLPEDPYDIDEILAVLVKAE 116 (172)
T ss_pred HHHHHHHHHhCCCCchhHHHHHhhcCCCCCCCCCCccCHHHHHHHHHHHH
Confidence 34788996 699999999999999999 678877766544
No 10
>PF15331 TP53IP5: Cellular tumour antigen p53-inducible 5
Probab=23.90 E-value=48 Score=26.65 Aligned_cols=11 Identities=36% Similarity=1.207 Sum_probs=9.4
Q ss_pred hhhhhhccCcc
Q 045287 18 ECWNTLMELKS 28 (104)
Q Consensus 18 ~CWsSl~~v~g 28 (104)
.||+||..++.
T Consensus 42 rCW~Sll~VPk 52 (220)
T PF15331_consen 42 RCWNSLLRVPK 52 (220)
T ss_pred HHHHHHhcccc
Confidence 49999999874
Done!