Query 045287
Match_columns 104
No_of_seqs 91 out of 93
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 20:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045287.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045287hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l32_A Phosphoprotein; antipar 20.2 37 0.0013 20.3 1.0 20 5-24 15-34 (45)
2 2ebo_A Ebola virus envelope gl 14.5 30 0.001 22.3 -0.4 13 40-52 42-56 (74)
3 1ry3_A Carnocin CP52, bacterio 11.7 75 0.0026 20.0 0.9 26 31-62 9-35 (64)
4 1ebo_A Ebola virus envelope pr 11.2 44 0.0015 23.6 -0.4 7 44-50 85-91 (131)
5 2ljo_A Non-specific lipid-tran 10.9 1.4E+02 0.0048 19.2 2.1 33 19-56 4-36 (93)
6 1afh_A Maize nonspecific lipid 10.9 1.4E+02 0.0047 18.9 2.0 60 19-83 4-77 (93)
7 2job_A Antilipopolysaccharide 10.6 52 0.0018 22.6 -0.2 22 27-48 12-34 (102)
8 2pnv_A Small conductance calci 10.4 1.1E+02 0.0039 17.6 1.3 10 2-11 24-33 (43)
9 1zrv_A Spinigerin; helical pep 10.4 40 0.0014 17.8 -0.6 10 1-10 16-25 (26)
10 1n89_A Lipid transfer protein; 10.1 1.5E+02 0.0052 17.7 1.9 18 43-61 19-36 (67)
No 1
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=20.15 E-value=37 Score=20.25 Aligned_cols=20 Identities=10% Similarity=0.388 Sum_probs=17.0
Q ss_pred hHHHHHHhCCCcchhhhhhc
Q 045287 5 DLVIRLEVSGGLTECWNTLM 24 (104)
Q Consensus 5 ~l~~rl~~~~~~~~CWsSl~ 24 (104)
.++.|++.|++..|=||...
T Consensus 15 qiVrkmKtGe~FfKiWS~~~ 34 (45)
T 3l32_A 15 QIVRQMRSGERFLKIWSQTV 34 (45)
T ss_dssp HHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHH
Confidence 46788999999999999874
No 2
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=14.52 E-value=30 Score=22.32 Aligned_cols=13 Identities=23% Similarity=0.440 Sum_probs=9.0
Q ss_pred Ccc-c-cCccchHHH
Q 045287 40 SQA-D-IGPDYCRAI 52 (104)
Q Consensus 40 G~~-~-IGp~CCkAi 52 (104)
|.+ . +||+||-.+
T Consensus 42 ggtc~ilgpdc~i~~ 56 (74)
T 2ebo_A 42 GGTCHILGPDCAIEP 56 (74)
T ss_dssp TCHHHHHGGGGGCCC
T ss_pred CCcceecCCccccCH
Confidence 444 4 999999543
No 3
>1ry3_A Carnocin CP52, bacteriocin carnobacteriocin B2; amphipathic helix, antibiotic; NMR {Carnobacterium maltaromaticum} SCOP: j.106.1.1
Probab=11.71 E-value=75 Score=19.97 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=20.0
Q ss_pred HHHHHHHHhCccc-cCccchHHHHHhhhcccch
Q 045287 31 NEIVIFFLNSQAD-IGPDYCRAIDIITRNCWPA 62 (104)
Q Consensus 31 ~EI~~~~lnG~~~-IGp~CCkAi~~I~~~CWP~ 62 (104)
.|-++.+.-|+.+ .|..| =.+.||..
T Consensus 9 ~~eL~~i~GG~yyGnGvyC------nk~kC~vd 35 (64)
T 1ry3_A 9 VKEMKQLHGGVNYGNGVSC------SKTKCSVN 35 (64)
T ss_dssp HHHHHTTSCCCSCTTSCCC------SSSCCCCC
T ss_pred HHHHhhhcCCeeeCCcceE------CCceeeec
Confidence 3446777788887 99999 56789985
No 4
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=11.23 E-value=44 Score=23.59 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=6.3
Q ss_pred cCccchH
Q 045287 44 IGPDYCR 50 (104)
Q Consensus 44 IGp~CCk 50 (104)
+||+||-
T Consensus 85 LGPdCcI 91 (131)
T 1ebo_A 85 LGPDCRI 91 (131)
T ss_dssp HGGGGGC
T ss_pred cCCcccc
Confidence 9999994
No 5
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=10.91 E-value=1.4e+02 Score=19.16 Aligned_cols=33 Identities=18% Similarity=0.514 Sum_probs=20.1
Q ss_pred hhhhhccCcchHHHHHHHHHhCccccCccchHHHHHhh
Q 045287 19 CWNTLMELKSCSNEIVIFFLNSQADIGPDYCRAIDIIT 56 (104)
Q Consensus 19 CWsSl~~v~gC~~EI~~~~lnG~~~IGp~CCkAi~~I~ 56 (104)
|=+.+..+-.|.. ++.|.....+.||..++.+.
T Consensus 4 C~~v~~~L~pCl~-----Yv~g~~~p~~~CC~gv~~l~ 36 (93)
T 2ljo_A 4 CGAVTSDLSPCLT-----YLTGGPGPSPQCCGGVKKLL 36 (93)
T ss_dssp SHHHHHHHHHHHH-----HHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH-----HHcCCCCCCCchhhHHHHHH
Confidence 3334444444533 34554458889999998885
No 6
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=10.90 E-value=1.4e+02 Score=18.95 Aligned_cols=60 Identities=15% Similarity=0.386 Sum_probs=35.0
Q ss_pred hhhhhccCcchHHHHHHHHHhCccc-cCccchHHHHHhh----------h--cccchhhccC-CCCchhhhHHhhcccc
Q 045287 19 CWNTLMELKSCSNEIVIFFLNSQAD-IGPDYCRAIDIIT----------R--NCWPAMLTSL-GFTAEEGNILRGYCDA 83 (104)
Q Consensus 19 CWsSl~~v~gC~~EI~~~~lnG~~~-IGp~CCkAi~~I~----------~--~CWP~mfps~-pf~~~e~~~LKg~C~~ 83 (104)
|=+.+..+..|..- +.|... -.++||.+++.+. . .|-=...++. +.-+.-+.-|-+.|.-
T Consensus 4 C~~v~~~L~pCl~y-----~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v 77 (93)
T 1afh_A 4 CGQVASAIAPCISY-----ARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGV 77 (93)
T ss_dssp SHHHHHHHGGGHHH-----HTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHC
T ss_pred hHHHHHhccCcHHH-----HcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCC
Confidence 44555566666554 344433 6668999999995 2 4442222333 4445556677788864
No 7
>2job_A Antilipopolysaccharide factor; ALF, lipid A binding protein, endotoxin, lipid binding protein; NMR {Penaeus monodon}
Probab=10.59 E-value=52 Score=22.55 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=16.5
Q ss_pred cchHHHHHHHHHhCccc-cCccc
Q 045287 27 KSCSNEIVIFFLNSQAD-IGPDY 48 (104)
Q Consensus 27 ~gC~~EI~~~~lnG~~~-IGp~C 48 (104)
+.=+..|+....||++. +|+.|
T Consensus 12 ~~i~~kl~~Lw~~g~v~~lGH~C 34 (102)
T 2job_A 12 AAVASKIVGLWRNEKTELLGHEC 34 (102)
T ss_dssp HHHHHHHHHTCCSSCEEETTEEE
T ss_pred HHHHHHHHhheeCCCEEEcCCeE
Confidence 34456677777789998 99988
No 8
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=10.43 E-value=1.1e+02 Score=17.60 Aligned_cols=10 Identities=50% Similarity=0.647 Sum_probs=7.8
Q ss_pred chhhHHHHHH
Q 045287 2 RIYDLVIRLE 11 (104)
Q Consensus 2 ~~~~l~~rl~ 11 (104)
||.+|..||+
T Consensus 24 Ri~~LE~KLd 33 (43)
T 2pnv_A 24 RIVTLETKLE 33 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6778888886
No 9
>1zrv_A Spinigerin; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic} PDB: 1zrw_A
Probab=10.42 E-value=40 Score=17.75 Aligned_cols=10 Identities=60% Similarity=0.869 Sum_probs=7.4
Q ss_pred CchhhHHHHH
Q 045287 1 LRIYDLVIRL 10 (104)
Q Consensus 1 ~~~~~l~~rl 10 (104)
|||+.|..||
T Consensus 16 lrimrlltrl 25 (26)
T 1zrv_A 16 LRIMRLLTRL 25 (26)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 4788887776
No 10
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=10.09 E-value=1.5e+02 Score=17.68 Aligned_cols=18 Identities=11% Similarity=0.423 Sum_probs=13.9
Q ss_pred ccCccchHHHHHhhhcccc
Q 045287 43 DIGPDYCRAIDIITRNCWP 61 (104)
Q Consensus 43 ~IGp~CCkAi~~I~~~CWP 61 (104)
...++||.+++.. ..|.=
T Consensus 19 ~Ps~~CC~~lk~~-~~ClC 36 (67)
T 1n89_A 19 KPSGECCGNLRAQ-QGCFC 36 (67)
T ss_dssp CCCHHHHHHHHHH-SSHHH
T ss_pred CCCHHHHHhhCCC-CCCCC
Confidence 4788999999975 56643
Done!