Query 045287
Match_columns 104
No_of_seqs 91 out of 93
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 20:42:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045287.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045287hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fk5a_ a.52.1.1 (A:) Plant no 20.5 26 0.0019 21.0 2.1 61 19-84 4-78 (93)
2 d1mida_ a.52.1.1 (A:) Plant no 18.3 31 0.0023 20.6 2.1 61 19-84 3-76 (91)
3 d1q8da_ a.228.1.1 (A:) GDNF re 11.5 4.6 0.00034 26.1 -3.6 25 44-68 71-98 (108)
4 d1k8rb_ d.15.1.5 (B:) Protein 8.4 72 0.0052 19.8 1.5 17 23-39 14-30 (95)
5 d1d2zb_ a.77.1.2 (B:) Tube dea 7.7 95 0.0069 20.8 2.0 17 9-25 21-37 (150)
6 d1hssa_ a.52.1.2 (A:) 0.19 alp 6.7 88 0.0064 20.2 1.3 36 25-61 12-50 (120)
7 d2cqea2 g.66.1.1 (A:429-457) Z 6.3 63 0.0046 16.2 0.3 10 76-85 12-21 (29)
8 d1kyqa2 e.37.1.1 (A:151-273) B 5.9 1E+02 0.0074 19.5 1.3 17 66-82 107-123 (123)
9 d1gv2a2 a.4.1.3 (A:144-190) c- 5.4 1E+02 0.0074 16.0 0.9 16 67-82 2-17 (47)
10 d1gvda_ a.4.1.3 (A:) c-Myb, DN 5.3 1E+02 0.0073 16.3 0.8 18 66-83 3-20 (52)
No 1
>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}
Probab=20.47 E-value=26 Score=20.97 Aligned_cols=61 Identities=16% Similarity=0.410 Sum_probs=36.1
Q ss_pred hhhhhccCcchHHHHHHHHHhCccc-cCccchHHHHHhhh------------cccchhhc-cCCCCchhhhHHhhccccC
Q 045287 19 CWNTLMELKSCSNEIVIFFLNSQAD-IGPDYCRAIDIITR------------NCWPAMLT-SLGFTAEEGNILRGYCDAS 84 (104)
Q Consensus 19 CWsSl~~v~gC~~EI~~~~lnG~~~-IGp~CCkAi~~I~~------------~CWP~mfp-s~pf~~~e~~~LKg~C~~~ 84 (104)
|=..+.++-.|.. |++|... -.+.||.+++.+.+ +|.=.... ..|+-+.-..-|=..|.-.
T Consensus 4 C~~v~~~l~pCl~-----Yltg~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 78 (93)
T d1fk5a_ 4 CGQVASAIAPCIS-----YARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVS 78 (93)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhhHH-----HHhCCCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHHHHHhhhHhcCCC
Confidence 4455555555643 4566654 78899999998863 23323222 2355555566677888643
No 2
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=18.32 E-value=31 Score=20.56 Aligned_cols=61 Identities=11% Similarity=0.390 Sum_probs=36.0
Q ss_pred hhhhhccCcchHHHHHHHHHhCccccCccchHHHHHhhh------------cccchhhcc-CCCCchhhhHHhhccccC
Q 045287 19 CWNTLMELKSCSNEIVIFFLNSQADIGPDYCRAIDIITR------------NCWPAMLTS-LGFTAEEGNILRGYCDAS 84 (104)
Q Consensus 19 CWsSl~~v~gC~~EI~~~~lnG~~~IGp~CCkAi~~I~~------------~CWP~mfps-~pf~~~e~~~LKg~C~~~ 84 (104)
|=+.+..+-.|.. |++|.....+.||.+++.+.. +|.-.+-.. .|.-+.-...|=+.|.-.
T Consensus 3 C~~v~~~l~pCl~-----Yl~g~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~ra~~LP~~C~v~ 76 (91)
T d1mida_ 3 CGQVDSKMKPCLT-----YVQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVN 76 (91)
T ss_dssp HHHHHHHHGGGHH-----HHTTCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhHH-----HHcCCCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHHHHhchHhcCCC
Confidence 4445555555643 355665699999999988863 233332222 234445566777888543
No 3
>d1q8da_ a.228.1.1 (A:) GDNF receptor alpha {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.52 E-value=4.6 Score=26.14 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=14.4
Q ss_pred cCccc-hHHHHHhhhcc--cchhhccCC
Q 045287 44 IGPDY-CRAIDIITRNC--WPAMLTSLG 68 (104)
Q Consensus 44 IGp~C-CkAi~~I~~~C--WP~mfps~p 68 (104)
|++.| |++...-...| |-+||..||
T Consensus 71 v~~~CtC~~sgn~~eeC~~f~~~f~~Np 98 (108)
T d1q8da_ 71 VAPWCDCSNSGNDLEDCLKFLNFFKDNT 98 (108)
T ss_dssp CCCSCBCTTCGGGHHHHHHHHHHHHSCH
T ss_pred cCCcccCCCCCCcHHHHHHHHHHHhcCh
Confidence 34445 66544444557 666777666
No 4
>d1k8rb_ d.15.1.5 (B:) Protein kinase byr2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=8.40 E-value=72 Score=19.84 Aligned_cols=17 Identities=6% Similarity=0.077 Sum_probs=13.6
Q ss_pred hccCcchHHHHHHHHHh
Q 045287 23 LMELKSCSNEIVIFFLN 39 (104)
Q Consensus 23 l~~v~gC~~EI~~~~ln 39 (104)
..++.||.+||+.-++.
T Consensus 14 ~vni~gC~~ai~~~~Lk 30 (95)
T d1k8rb_ 14 AVQSRGDYQKTLAIALK 30 (95)
T ss_dssp EEECCSCHHHHHHHHHH
T ss_pred EEEeccCHHHHHHHHHH
Confidence 57899999998776664
No 5
>d1d2zb_ a.77.1.2 (B:) Tube death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=7.73 E-value=95 Score=20.81 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=10.8
Q ss_pred HHHhCCCcchhhhhhcc
Q 045287 9 RLEVSGGLTECWNTLME 25 (104)
Q Consensus 9 rl~~~~~~~~CWsSl~~ 25 (104)
+|.+--|..+||..||.
T Consensus 21 ~La~iLD~~~~WkkLm~ 37 (150)
T d1d2zb_ 21 RLAKILDENSCWRKLMS 37 (150)
T ss_dssp HHHHHHHGGGHHHHHHH
T ss_pred HHHHHcCccchHHHHHH
Confidence 33333346779999875
No 6
>d1hssa_ a.52.1.2 (A:) 0.19 alpha-amylase inhibitor {Wheat (Triticum aestivum) [TaxId: 4565]}
Probab=6.67 E-value=88 Score=20.15 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=25.1
Q ss_pred cCcchHHHHHHHHHhCcc--c-cCccchHHHHHhhhcccc
Q 045287 25 ELKSCSNEIVIFFLNSQA--D-IGPDYCRAIDIITRNCWP 61 (104)
Q Consensus 25 ~v~gC~~EI~~~~lnG~~--~-IGp~CCkAi~~I~~~CWP 61 (104)
-+++|-..+.+- -.|.. . +...||+-+..|.+.|+=
T Consensus 12 pL~~CR~yv~~q-~~G~~~~~~~k~~CC~eLa~i~~~CRC 50 (120)
T d1hssa_ 12 ALPACRPLLRLQ-CNGSQVPEAVLRDCCQQLAHISEWCRC 50 (120)
T ss_dssp CCTTHHHHHHHH-TTTCCCCHHHHHHHHHHHHTSCTTTHH
T ss_pred ccHHHHHHHHHH-hcCCCCcchHHHHHHHHHHhcCcccch
Confidence 467787765333 44433 2 668899999999999974
No 7
>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.27 E-value=63 Score=16.25 Aligned_cols=10 Identities=20% Similarity=0.850 Sum_probs=7.0
Q ss_pred HHhhccccCC
Q 045287 76 ILRGYCDASS 85 (104)
Q Consensus 76 ~LKg~C~~~~ 85 (104)
-|.|||++..
T Consensus 12 YvqGyCtrge 21 (29)
T d2cqea2 12 YITGFCARAE 21 (29)
T ss_dssp TTTTCCSCST
T ss_pred heeeeecCCc
Confidence 3678898763
No 8
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.90 E-value=1e+02 Score=19.46 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=13.8
Q ss_pred cCCCCchhhhHHhhccc
Q 045287 66 SLGFTAEEGNILRGYCD 82 (104)
Q Consensus 66 s~pf~~~e~~~LKg~C~ 82 (104)
..|-+|++.+++++||+
T Consensus 107 ~~~~~pp~~~~~~~~~~ 123 (123)
T d1kyqa2 107 CSLQFPPRERLLSEYCS 123 (123)
T ss_dssp SCCCCCCHHHHHHHSBC
T ss_pred cCCCCCChhHHHHHhhC
Confidence 35777889999999985
No 9
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.42 E-value=1e+02 Score=15.99 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=12.0
Q ss_pred CCCCchhhhHHhhccc
Q 045287 67 LGFTAEEGNILRGYCD 82 (104)
Q Consensus 67 ~pf~~~e~~~LKg~C~ 82 (104)
.||+++|-++|...-.
T Consensus 2 ~~WT~eED~~L~~~v~ 17 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHK 17 (47)
T ss_dssp CCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4889999888876543
No 10
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.33 E-value=1e+02 Score=16.27 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=13.7
Q ss_pred cCCCCchhhhHHhhcccc
Q 045287 66 SLGFTAEEGNILRGYCDA 83 (104)
Q Consensus 66 s~pf~~~e~~~LKg~C~~ 83 (104)
..|++++|-++|+..-.+
T Consensus 3 rg~WT~eED~~L~~~v~~ 20 (52)
T d1gvda_ 3 KGPWTKEEDQRLIKLVQK 20 (52)
T ss_dssp CCSCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 358999999999876443
Done!