BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045288
(236 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 32 KVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKP------YYGY 85
++++A ++G + + +L + A EE F+L +E KEK +++ Y
Sbjct: 69 ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128
Query: 86 LGNNPLVPAIYEGMGVDYANTIEGTQNFTNL-IWPEGNENFCKTVVSYSRLVSELEQMVK 144
L NN +E DY + + +L IWP+ ++ + Y++ + L V
Sbjct: 129 LANNASGQLEWE----DYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 184
Query: 145 RMVFESYGV--DKYYDSV--LESSTYLLRIMKY-RCPETNEKNLGCDVHTDKSFITVLHQ 199
+ + G+ D+ V LE ++I Y +CP+ E LG + HTD S +T +
Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP-ELALGVEAHTDVSALTFILH 243
Query: 200 NEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAF 233
N V GL++ +G W+ P S ++ GD
Sbjct: 244 NMVPGLQLFY-EGKWVTA-KCVPDSIVMHIGDTL 275
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 19/214 (8%)
Query: 32 KVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKP------YYGY 85
++++A ++G + + +L + A EE F+L +E KEK +++ Y
Sbjct: 68 ELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 127
Query: 86 LGNNPLVPAIYEGMGVDYANTIEGTQNFTNL-IWPEGNENFCKTVVSYSRLVSELEQMVK 144
L NN +E DY + + +L IWP+ ++ + Y++ + L V
Sbjct: 128 LANNASGQLEWE----DYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 183
Query: 145 RMVFESYGV--DKYYDSV--LESSTYLLRIMKY-RCPETNEKNLGCDVHTDKSFITVLHQ 199
+ + G+ D+ V LE ++I Y +CP+ E LG + HTD S +T +
Sbjct: 184 KALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQP-ELALGVEAHTDVSALTFILH 242
Query: 200 NEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAF 233
N V GL++ +G W+ P S ++ GD
Sbjct: 243 NMVPGLQLFY-EGKWVTA-KCVPDSIVMHIGDTL 274
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 19/216 (8%)
Query: 32 KVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKP------YYGY 85
++++A ++G + + +L + A EE F+L +E KEK +++ Y
Sbjct: 69 ELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSK 128
Query: 86 LGNNPLVPAIYEGMGVDYANTIEGTQNFTNL-IWPEGNENFCKTVVSYSRLVSELEQMVK 144
L NN +E DY + + +L IWP+ ++ + Y++ + L V
Sbjct: 129 LANNASGQLEWE----DYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVF 184
Query: 145 RMVFESYGV--DKYYDSV--LESSTYLLRIMKY-RCPETNEKNLGCDVHTDKSFITVLHQ 199
+ + G+ D+ V LE +I Y +CP+ E LG + HTD S +T +
Sbjct: 185 KALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQP-ELALGVEAHTDVSALTFILH 243
Query: 200 NEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235
N V GL++ +G W+ P S + GD +
Sbjct: 244 NXVPGLQLFY-EGKWVTA-KCVPDSIVXHIGDTLEI 277
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 158 DSVLESSTYLLRIMKYRCPETNEKNLGC---DVHTDKSFITVLHQNEVNGLEIRTKDGCW 214
+ + S LLRI+ Y P T ++ G H D + ITVL GL+++ KDG W
Sbjct: 142 EXIANSHKTLLRILHY-PPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSW 200
Query: 215 IGFDDPTPSSF---IVLAGD 231
+ PS F I+ GD
Sbjct: 201 LD----VPSDFGNIIINIGD 216
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 87/221 (39%), Gaps = 29/221 (13%)
Query: 30 SRKVREALEEFGCFVALYD-EVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGYLGN 88
++++ + E +G F L D ++ +A +A+ F LP+E K++ K G G
Sbjct: 23 AQELGASFERYG-FAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVK--GGARGY 79
Query: 89 NPLVPAIYEGMGVDYANTIEGTQNFTNL-------------IWPEGNENFCKTVV-SYSR 134
P + G D+ + E +L +WP F V Y+
Sbjct: 80 IPF--GVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNS 137
Query: 135 LVSE----LEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTD 190
L LE + + E ++ ++ +LR++ Y + + H D
Sbjct: 138 LDGXGGKVLEAIATYLKLER----DFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGD 193
Query: 191 KSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGD 231
+ IT+L E GLE+ +DG W+ +P P ++ GD
Sbjct: 194 INTITLLLGAEEGGLEVLDRDGQWLPI-NPPPGCLVINIGD 233
>pdb|2HSG|A Chain A, Structure Of Transcription Regulator Ccpa In Its Dna-Free
State
Length = 332
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 124 NFCKTVVSYSRLVSELEQMVKRMVFESYGV--DKYYDSVLESSTYLLRIMKYRCPETNEK 181
N K V Y R ++E V+ +SY V D YDS +E+ LL E +EK
Sbjct: 192 NHAKKVKGYKRALTESGLPVR----DSYIVEGDYTYDSGIEAVEKLL--------EEDEK 239
Query: 182 NLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFI 226
V TD+ + V+H + GL + D IGFD+ S+ +
Sbjct: 240 PTAIFVGTDEMALGVIHGAQDRGLNV-PNDLEIIGFDNTRLSTMV 283
>pdb|1ZVV|A Chain A, Crystal Structure Of A Ccpa-Crh-Dna Complex
pdb|1ZVV|B Chain B, Crystal Structure Of A Ccpa-Crh-Dna Complex
pdb|1ZVV|G Chain G, Crystal Structure Of A Ccpa-Crh-Dna Complex
pdb|2JCG|A Chain A, Apo Form Of The Catabolite Control Protein A (Ccpa) From
Bacillus Megaterium, With The Dna Binding Domain
Length = 332
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 124 NFCKTVVSYSRLVSELEQMVKRMVFESYGV--DKYYDSVLESSTYLLRIMKYRCPETNEK 181
N K V Y R ++E V+ +SY V D YDS +E+ LL E +EK
Sbjct: 192 NHAKKVKGYKRALTESGLPVR----DSYIVEGDYTYDSGIEAVEKLL--------EEDEK 239
Query: 182 NLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFI 226
V TD+ + V+H + GL + D IGFD+ S+ +
Sbjct: 240 PTAIFVGTDEMALGVIHGAQDRGLNV-PNDLEIIGFDNTRLSTMV 283
>pdb|1SXG|A Chain A, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|D Chain D, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|B Chain B, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|I Chain I, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|P Chain P, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|1SXG|F Chain F, Structural Studies On The Apo Transcription Factor Form B.
Megaterium
pdb|2NZU|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors G6p And Fbp
pdb|2NZV|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors G6p And Fbp
pdb|2OEN|G Chain G, Structural Mechanism For The Fine-Tuning Of Ccpa Function
By The Small Molecule Effectors Glucose-6-Phosphate And
Fructose-1,6-Bisphosphate
Length = 280
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 124 NFCKTVVSYSRLVSELEQMVKRMVFESYGV--DKYYDSVLESSTYLLRIMKYRCPETNEK 181
N K V Y R ++E V+ +SY V D YDS +E+ LL E +EK
Sbjct: 140 NHAKKVKGYKRALTESGLPVR----DSYIVEGDYTYDSGIEAVEKLL--------EEDEK 187
Query: 182 NLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFI 226
V TD+ + V+H + GL + D IGFD+ S+ +
Sbjct: 188 PTAIFVGTDEMALGVIHGAQDRGLNV-PNDLEIIGFDNTRLSTMV 231
>pdb|1RZR|D Chain D, Crystal Structure Of Transcriptional Regulator-
Phosphoprotein-Dna Complex
Length = 332
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 124 NFCKTVVSYSRLVSELEQMVKRMVFESYGV--DKYYDSVLESSTYLLRIMKYRCPETNEK 181
N K V Y R ++E V+ +SY V D YDS +E+ LL E +EK
Sbjct: 192 NHAKKVKGYKRALTESGLPVR----DSYIVEGDYTYDSGIEAVEKLL--------EEDEK 239
Query: 182 NLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFI 226
V TD+ + V+H + GL + D IGFD+ S+ +
Sbjct: 240 PTAIFVGTDEXALGVIHGAQDRGLNV-PNDLEIIGFDNTRLSTXV 283
>pdb|1RZR|G Chain G, Crystal Structure Of Transcriptional Regulator-
Phosphoprotein-Dna Complex
pdb|1RZR|C Chain C, Crystal Structure Of Transcriptional Regulator-
Phosphoprotein-Dna Complex
pdb|1RZR|A Chain A, Crystal Structure Of Transcriptional Regulator-
Phosphoprotein-Dna Complex
Length = 332
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 124 NFCKTVVSYSRLVSELEQMVKRMVFESYGV--DKYYDSVLESSTYLLRIMKYRCPETNEK 181
N K V Y R ++E V+ +SY V D YDS +E+ LL E +EK
Sbjct: 192 NHAKKVKGYKRALTESGLPVR----DSYIVEGDYTYDSGIEAVEKLL--------EEDEK 239
Query: 182 NLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFI 226
V TD+ + V+H + GL + D IGFD+ S+ +
Sbjct: 240 PTAIFVGTDEXALGVIHGAQDRGLNV-PNDLEIIGFDNTRLSTXV 283
>pdb|1SXH|A Chain A, Apo Structure Of B. Megaterium Transcription Regulator
pdb|1SXH|D Chain D, Apo Structure Of B. Megaterium Transcription Regulator
pdb|1SXI|A Chain A, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|D Chain D, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|B Chain B, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|I Chain I, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|R Chain R, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|T Chain T, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|L Chain L, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|K Chain K, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|W Chain W, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|G Chain G, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|N Chain N, Structure Of Apo Transcription Regulator B. Megaterium
pdb|1SXI|M Chain M, Structure Of Apo Transcription Regulator B. Megaterium
Length = 280
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 124 NFCKTVVSYSRLVSELEQMVKRMVFESYGV--DKYYDSVLESSTYLLRIMKYRCPETNEK 181
N K V Y R ++E V+ +SY V D YDS +E+ LL E +EK
Sbjct: 140 NHAKKVKGYKRALTESGLPVR----DSYIVEGDYTYDSGIEAVEKLL--------EEDEK 187
Query: 182 NLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFI 226
V TD+ + V+H + GL + D IGFD+ S+ +
Sbjct: 188 PTAIFVGTDEXALGVIHGAQDRGLNV-PNDLEIIGFDNTRLSTXV 231
>pdb|2XDQ|B Chain B, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
Chlb)2 Complex
Length = 511
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 69 PIEIKEKNVSEKPYYGYLGNNPLVPAIY 96
PI I++ V +P+ GY G N LV IY
Sbjct: 399 PIHIQDFPVGYRPFLGYEGTNQLVDLIY 426
>pdb|3LED|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii From Rhodopseudomonas Palustris Cga009
pdb|3LED|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii From Rhodopseudomonas Palustris Cga009
Length = 392
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 99 MGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLV-SELEQMVKRMVFE---SYGVD 154
+ ++N I F N WPEG + K V R V E+ +V + E G+D
Sbjct: 248 LKTQFSNNIRNNAGFLNRAWPEGRDKADKLFVQQGRKVFKEVVPLVSEXIIEHAREIGID 307
Query: 155 KY 156
+
Sbjct: 308 PH 309
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 183 LGCDVHTDKSFITVLHQNEVNGLEIRTKDG 212
L + H D S ITVL+Q+ V L++ T G
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAG 238
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 135 LVSELEQMVKRMVFESYG--VDKYYDSVLESSTYLLRIMKYR 174
+VS+LE R VF G +DK +DS+L+SS +RI+ R
Sbjct: 17 VVSQLEAQGVRQVFGIPGAKIDKVFDSLLDSS---IRIIPVR 55
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 183 LGCDVHTDKSFITVLHQNEVNGLEIRTKDG 212
L + H D S ITVL+Q+ V L++ T G
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAG 238
>pdb|2XGX|A Chain A, Crystal Structure Of Transcription Factor Ntca From
Synechococcus Elongatus (Mercury Derivative)
pdb|2XGX|B Chain B, Crystal Structure Of Transcription Factor Ntca From
Synechococcus Elongatus (Mercury Derivative)
pdb|2XHK|A Chain A, Crystal Structure Of Transcription Factor Ntca From
Synechococcus Elongatus Bound To 2-Oxoglutarate
pdb|2XHK|B Chain B, Crystal Structure Of Transcription Factor Ntca From
Synechococcus Elongatus Bound To 2-Oxoglutarate
pdb|2XKO|A Chain A, Crystal Structure Of The Complex Of Ntca With Its
Transcriptional Co-Activator Pipx
pdb|2XKO|B Chain B, Crystal Structure Of The Complex Of Ntca With Its
Transcriptional Co-Activator Pipx
pdb|2XKP|A Chain A, Ntca From Synechococcus Elongatus: Active And Inactive
pdb|2XKP|B Chain B, Ntca From Synechococcus Elongatus: Active And Inactive
pdb|2XKP|C Chain C, Ntca From Synechococcus Elongatus: Active And Inactive
pdb|2XKP|D Chain D, Ntca From Synechococcus Elongatus: Active And Inactive
pdb|2XKP|E Chain E, Ntca From Synechococcus Elongatus: Active And Inactive
pdb|2XKP|F Chain F, Ntca From Synechococcus Elongatus: Active And Inactive
Length = 222
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 40 FGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKP 81
FG L + S ++A+ +LF++PIE +K + E+P
Sbjct: 74 FGVLSLLTGQRSDRFYHAVAFTPVQLFSVPIEFMQKALIERP 115
>pdb|2KBG|A Chain A, Solution Structure Of The Second Fibronectin Type-Iii
Module Of Ncam2
Length = 114
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 170 IMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPT 221
I+KYR + ++ L V +K I + H G E++ +G+ +PT
Sbjct: 42 IVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPT 93
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 170 IMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSF 225
I+KYR + ++ L V +K I + H G E++ +G+ +PT F
Sbjct: 327 IVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEF 382
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,614,005
Number of Sequences: 62578
Number of extensions: 324662
Number of successful extensions: 860
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 844
Number of HSP's gapped (non-prelim): 23
length of query: 236
length of database: 14,973,337
effective HSP length: 96
effective length of query: 140
effective length of database: 8,965,849
effective search space: 1255218860
effective search space used: 1255218860
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)