Query 045288
Match_columns 236
No_of_seqs 106 out of 1114
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 11:42:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3491 PcbC Isopenicillin N s 100.0 3.7E-58 8E-63 379.7 20.1 228 5-235 2-242 (322)
2 PTZ00273 oxidase reductase; Pr 100.0 1.3E-57 2.7E-62 393.1 22.5 229 5-235 2-246 (320)
3 PLN02276 gibberellin 20-oxidas 100.0 3.8E-57 8.2E-62 394.9 22.8 227 6-235 38-273 (361)
4 PLN02216 protein SRG1 100.0 3E-56 6.4E-61 388.5 23.6 221 7-236 51-279 (357)
5 PLN02750 oxidoreductase, 2OG-F 100.0 5.6E-56 1.2E-60 385.9 23.9 225 6-235 24-262 (345)
6 PLN02485 oxidoreductase 100.0 3.5E-56 7.7E-61 385.3 22.4 230 4-235 3-257 (329)
7 PLN02758 oxidoreductase, 2OG-F 100.0 7.5E-56 1.6E-60 386.5 23.6 224 6-236 50-281 (361)
8 PLN02515 naringenin,2-oxogluta 100.0 1.1E-55 2.4E-60 384.6 22.8 222 7-235 36-264 (358)
9 PLN02254 gibberellin 3-beta-di 100.0 1.1E-55 2.4E-60 384.6 22.5 214 6-235 54-278 (358)
10 PLN02997 flavonol synthase 100.0 2E-55 4.4E-60 378.6 23.9 217 6-235 30-250 (325)
11 PLN03002 oxidoreductase, 2OG-F 100.0 2E-55 4.3E-60 380.4 23.4 223 5-235 11-255 (332)
12 PLN03178 leucoanthocyanidin di 100.0 1.9E-55 4.2E-60 384.3 21.7 224 5-235 44-278 (360)
13 PLN00417 oxidoreductase, 2OG-F 100.0 5.8E-55 1.3E-59 379.2 23.1 223 5-235 41-271 (348)
14 PLN02393 leucoanthocyanidin di 100.0 7.6E-55 1.7E-59 380.5 22.6 225 5-236 48-282 (362)
15 PLN02912 oxidoreductase, 2OG-F 100.0 1.4E-54 2.9E-59 376.9 22.6 219 6-235 39-264 (348)
16 KOG0143 Iron/ascorbate family 100.0 2.4E-54 5.2E-59 370.7 23.4 224 6-236 15-246 (322)
17 PLN02299 1-aminocyclopropane-1 100.0 1.4E-54 3.1E-59 373.0 21.2 217 5-235 3-226 (321)
18 PLN02947 oxidoreductase 100.0 4.1E-54 8.8E-59 376.4 23.9 221 5-236 63-293 (374)
19 PLN02904 oxidoreductase 100.0 1.1E-53 2.5E-58 372.1 23.7 220 7-236 50-276 (357)
20 PLN02639 oxidoreductase, 2OG-F 100.0 4.2E-53 9.1E-58 366.7 22.6 216 6-235 35-258 (337)
21 PLN02156 gibberellin 2-beta-di 100.0 6.6E-53 1.4E-57 363.9 22.7 216 6-235 24-248 (335)
22 PLN02704 flavonol synthase 100.0 8.7E-53 1.9E-57 364.5 22.6 217 6-235 40-266 (335)
23 PLN02365 2-oxoglutarate-depend 100.0 2.2E-52 4.8E-57 356.9 21.8 212 7-235 4-219 (300)
24 PLN02403 aminocyclopropanecarb 100.0 4.7E-52 1E-56 354.3 21.5 212 8-235 2-222 (303)
25 PLN02984 oxidoreductase, 2OG-F 100.0 2.5E-51 5.4E-56 354.9 22.8 214 6-235 36-267 (341)
26 PLN03001 oxidoreductase, 2OG-F 100.0 2.6E-41 5.6E-46 282.8 15.2 171 59-235 2-183 (262)
27 PF14226 DIOX_N: non-haem diox 99.9 8.3E-26 1.8E-30 167.3 7.8 108 9-121 1-116 (116)
28 PLN03176 flavanone-3-hydroxyla 99.8 1.2E-19 2.6E-24 134.6 10.0 80 7-88 36-116 (120)
29 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.5 1.2E-14 2.5E-19 104.2 3.0 65 166-235 2-68 (98)
30 PF13640 2OG-FeII_Oxy_3: 2OG-F 86.7 0.68 1.5E-05 32.4 2.8 56 168-230 1-76 (100)
31 smart00702 P4Hc Prolyl 4-hydro 84.5 6.7 0.00015 30.5 7.8 80 139-229 60-152 (178)
32 PRK05467 Fe(II)-dependent oxyg 76.3 17 0.00037 29.9 7.7 29 202-232 129-157 (226)
33 PRK08130 putative aldolase; Va 67.8 8.3 0.00018 31.3 4.0 37 8-51 127-163 (213)
34 COG2140 Thermophilic glucose-6 67.1 15 0.00033 29.8 5.2 63 164-232 88-152 (209)
35 PF07350 DUF1479: Protein of u 64.4 6.5 0.00014 35.3 3.0 55 5-67 46-100 (416)
36 PF12791 RsgI_N: Anti-sigma fa 64.3 5.1 0.00011 25.0 1.7 25 207-235 10-34 (56)
37 PRK08333 L-fuculose phosphate 63.6 11 0.00024 29.7 3.9 37 8-51 120-156 (184)
38 PRK05874 L-fuculose-phosphate 58.6 13 0.00028 30.3 3.6 37 8-51 127-163 (217)
39 TIGR02409 carnitine_bodg gamma 58.5 13 0.00028 32.8 3.8 50 7-65 108-157 (366)
40 PRK06755 hypothetical protein; 58.5 12 0.00026 30.4 3.3 48 8-62 136-185 (209)
41 PRK06833 L-fuculose phosphate 49.2 24 0.00051 28.6 3.7 25 27-51 136-160 (214)
42 PRK03634 rhamnulose-1-phosphat 45.9 30 0.00065 29.3 3.9 37 8-51 179-215 (274)
43 PRK08660 L-fuculose phosphate 44.9 31 0.00067 27.1 3.7 36 8-51 115-150 (181)
44 PRK08087 L-fuculose phosphate 44.6 34 0.00075 27.7 4.0 37 8-51 122-158 (215)
45 PF00596 Aldolase_II: Class II 43.9 14 0.0003 29.0 1.5 38 7-51 122-160 (184)
46 PF11243 DUF3045: Protein of u 43.6 21 0.00045 24.1 2.0 22 30-51 35-56 (89)
47 PRK15401 alpha-ketoglutarate-d 42.4 58 0.0012 26.6 4.9 56 168-232 118-183 (213)
48 TIGR02624 rhamnu_1P_ald rhamnu 42.3 35 0.00076 28.9 3.8 36 9-51 178-213 (270)
49 PF06820 Phage_fiber_C: Putati 41.1 30 0.00065 21.9 2.3 39 181-219 14-62 (64)
50 TIGR02410 carnitine_TMLD trime 41.1 38 0.00081 29.9 3.9 50 8-65 100-149 (362)
51 PLN00052 prolyl 4-hydroxylase; 41.0 1.4E+02 0.003 25.9 7.3 47 139-199 112-171 (310)
52 PRK05834 hypothetical protein; 40.2 44 0.00096 26.7 3.9 24 28-51 136-161 (194)
53 TIGR01086 fucA L-fuculose phos 39.4 38 0.00083 27.4 3.5 36 9-51 122-157 (214)
54 COG3113 Predicted NTP binding 38.8 83 0.0018 22.3 4.5 56 8-71 40-95 (99)
55 PRK06557 L-ribulose-5-phosphat 37.5 36 0.00079 27.6 3.1 37 8-51 130-168 (221)
56 PF06560 GPI: Glucose-6-phosph 37.0 56 0.0012 26.0 3.9 37 194-232 94-136 (182)
57 PF13532 2OG-FeII_Oxy_2: 2OG-F 35.8 42 0.00092 26.2 3.2 59 166-232 97-164 (194)
58 PRK06357 hypothetical protein; 35.7 67 0.0015 26.1 4.3 37 8-51 130-172 (216)
59 PF01471 PG_binding_1: Putativ 35.1 49 0.0011 20.2 2.8 41 29-69 4-44 (57)
60 cd00379 Ribosomal_L10_P0 Ribos 34.4 1.5E+02 0.0033 22.2 6.0 38 26-63 3-41 (155)
61 KOG2107 Uncharacterized conser 33.7 44 0.00095 26.1 2.7 38 188-228 91-128 (179)
62 TIGR03328 salvage_mtnB methylt 32.6 75 0.0016 25.2 4.1 25 27-51 137-164 (193)
63 PF12368 DUF3650: Protein of u 32.4 22 0.00049 19.0 0.7 18 43-60 9-26 (28)
64 cd00398 Aldolase_II Class II A 32.2 39 0.00084 27.1 2.4 40 7-51 121-160 (209)
65 TIGR00568 alkb DNA alkylation 31.8 94 0.002 24.3 4.4 59 167-232 96-162 (169)
66 PF03668 ATP_bind_2: P-loop AT 31.6 69 0.0015 27.4 3.9 29 33-63 17-45 (284)
67 PF06268 Fascin: Fascin domain 31.1 83 0.0018 22.3 3.8 42 186-229 19-60 (111)
68 PRK09553 tauD taurine dioxygen 30.0 1.2E+02 0.0025 25.6 5.0 38 28-68 28-65 (277)
69 PF11074 DUF2779: Domain of un 29.6 1.1E+02 0.0025 22.7 4.4 36 22-57 53-89 (130)
70 cd05796 Ribosomal_P0_like Ribo 27.2 1.8E+02 0.004 22.4 5.3 38 26-63 3-41 (163)
71 PF12851 Tet_JBP: Oxygenase do 27.0 1.4E+02 0.003 23.4 4.6 48 183-233 85-145 (171)
72 PRK08193 araD L-ribulose-5-pho 26.9 1.1E+02 0.0024 25.0 4.3 43 8-51 124-173 (231)
73 cd05797 Ribosomal_L10 Ribosoma 24.9 2.5E+02 0.0055 21.2 5.7 38 26-63 5-43 (157)
74 cd05795 Ribosomal_P0_L10e Ribo 24.6 2.3E+02 0.005 22.1 5.6 39 26-64 3-42 (175)
75 COG1402 Uncharacterized protei 24.3 2.2E+02 0.0047 23.9 5.5 42 26-67 88-132 (250)
76 PRK15331 chaperone protein Sic 23.3 87 0.0019 24.5 2.8 42 26-68 9-50 (165)
77 PF02678 Pirin: Pirin; InterP 23.2 1.2E+02 0.0025 21.8 3.3 20 180-199 39-58 (107)
78 PF07061 Swi5: Swi5; InterPro 23.2 1.7E+02 0.0036 20.0 3.9 33 126-159 42-75 (83)
79 PRK06754 mtnB methylthioribulo 23.1 92 0.002 25.1 3.1 25 27-51 148-173 (208)
80 PF02668 TauD: Taurine catabol 22.6 1.9E+02 0.0041 23.3 5.0 30 28-57 24-53 (258)
81 PF00356 LacI: Bacterial regul 22.1 78 0.0017 18.9 1.9 17 26-42 27-43 (46)
82 KOG3571 Dishevelled 3 and rela 21.9 30 0.00064 31.9 -0.0 41 182-226 384-424 (626)
83 PF11043 DUF2856: Protein of u 21.8 1.3E+02 0.0027 20.5 2.9 24 53-76 21-44 (97)
84 PRK06661 hypothetical protein; 21.5 1.1E+02 0.0023 25.2 3.2 25 27-51 137-161 (231)
85 PRK09220 methylthioribulose-1- 21.0 1.1E+02 0.0023 24.6 3.1 25 27-51 145-172 (204)
86 TIGR03677 rpl7ae 50S ribosomal 20.9 3.1E+02 0.0067 19.9 5.2 36 30-65 78-116 (117)
87 PRK00099 rplJ 50S ribosomal pr 20.8 3.6E+02 0.0077 20.8 5.9 39 26-64 6-45 (172)
88 COG2450 Uncharacterized conser 20.7 1.4E+02 0.0031 22.1 3.3 36 8-45 65-100 (124)
89 PF08699 DUF1785: Domain of un 20.2 60 0.0013 20.0 1.1 24 203-229 19-42 (52)
No 1
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=3.7e-58 Score=379.66 Aligned_cols=228 Identities=24% Similarity=0.430 Sum_probs=208.0
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC--CCC
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE--KPY 82 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~--~~~ 82 (236)
+...||+|||+.+ ..+++.+|..++++|++||+++|||||+||||+.++++++++++++||+||.|+|.++... ...
T Consensus 2 ~~~~lp~idls~~-~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~ 80 (322)
T COG3491 2 STRDLPIIDLSEL-AGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQH 80 (322)
T ss_pred CCCcCceeccHHh-cCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccc
Confidence 4578999999997 5555668999999999999999999999999999999999999999999999999999875 358
Q ss_pred cCccCCCC----CCCcceeeeeccCCCC--c----ccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045288 83 YGYLGNNP----LVPAIYEGMGVDYANT--I----EGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYG 152 (236)
Q Consensus 83 ~GY~~~~~----~~~d~~E~~~~~~~~~--~----~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lg 152 (236)
+||.+.+. +..|++|.+.++...+ . .+.+..++|+|| ..|++|+.+..|++.|.+++..||+++|.+|+
T Consensus 81 rGY~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~Ld 159 (322)
T COG3491 81 RGYTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWP-AIPGLRDALLQYYRAMTAVGLRLLRAIALGLD 159 (322)
T ss_pred cccccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998875 4459999999987654 2 233556899999 79999999999999999999999999999999
Q ss_pred CC-hhhHHhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCc
Q 045288 153 VD-KYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGD 231 (236)
Q Consensus 153 l~-~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd 231 (236)
|+ ++|++.++++.+++|++|||+.+..++.-+.++|+|+|+||+|+||+++||||+++.|+|++|+| .||+++||+||
T Consensus 160 L~~d~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD~G~lTLl~Qd~~~GLqv~~~~g~Wl~v~P-~pgtlvVNiGd 238 (322)
T COG3491 160 LPEDFFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTDYGLLTLLFQDDVGGLEVRPPNGGWLDVPP-IPGTLVVNIGD 238 (322)
T ss_pred CChhhhhhccCCchheEEEEecCCCcccccccccccccCCCeEEEEEecccCCeEEecCCCCeeECCC-CCCeEEEeHHH
Confidence 99 89998999999999999999998888888899999999999999999999999999899999999 99999999999
Q ss_pred cccc
Q 045288 232 AFLV 235 (236)
Q Consensus 232 ~le~ 235 (236)
+||.
T Consensus 239 mLe~ 242 (322)
T COG3491 239 MLER 242 (322)
T ss_pred HHHH
Confidence 9984
No 2
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=1.3e-57 Score=393.13 Aligned_cols=229 Identities=21% Similarity=0.307 Sum_probs=200.4
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC--CCC
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE--KPY 82 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~--~~~ 82 (236)
+.++||||||+.+ .+++++++.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++... ...
T Consensus 2 ~~~~iPvIDl~~~-~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~ 80 (320)
T PTZ00273 2 TRASLPVIDVSPL-FGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLH 80 (320)
T ss_pred CCCCCCEEecHHh-cCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCC
Confidence 3568999999996 4544556788999999999999999999999999999999999999999999999998643 357
Q ss_pred cCccCCCC------CCCcceeeeeccCCC--Ccc----cccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045288 83 YGYLGNNP------LVPAIYEGMGVDYAN--TIE----GTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFES 150 (236)
Q Consensus 83 ~GY~~~~~------~~~d~~E~~~~~~~~--~~~----~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~ 150 (236)
+||.+.+. ...|++|+|.++... ..+ .....++|.||+..|+||+.+++|++.|.+++..|+++|+++
T Consensus 81 ~GY~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~ 160 (320)
T PTZ00273 81 RGYGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALA 160 (320)
T ss_pred CCCCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89987653 234899999987431 111 112345799999889999999999999999999999999999
Q ss_pred cCCC-hhhHHhhcCcccceeccccCCCCC-CCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEe
Q 045288 151 YGVD-KYYDSVLESSTYLLRIMKYRCPET-NEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVL 228 (236)
Q Consensus 151 Lgl~-~~~~~~~~~~~~~lr~~~Yp~~~~-~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn 228 (236)
||++ ++|.+.+..+.+.+|++|||+++. ++..+|+++|||+|+||+|+||.++||||++++|+|++|+| .||++|||
T Consensus 161 Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g~Wi~V~p-~pg~lvVN 239 (320)
T PTZ00273 161 IGLREDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGEHTDYGIITLLYQDSVGGLQVRNLSGEWMDVPP-LEGSFVVN 239 (320)
T ss_pred hCcCHHHHHHhhCCCcceeeeeecCCCCCccccCcccccccCCCeEEEEecCCCCceEEECCCCCEEeCCC-CCCeEEEE
Confidence 9999 899888888888999999999986 35789999999999999999999999999988999999999 99999999
Q ss_pred cCccccc
Q 045288 229 AGDAFLV 235 (236)
Q Consensus 229 ~Gd~le~ 235 (236)
+||+||+
T Consensus 240 vGD~l~~ 246 (320)
T PTZ00273 240 IGDMMEM 246 (320)
T ss_pred HHHHHHH
Confidence 9999986
No 3
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=3.8e-57 Score=394.94 Aligned_cols=227 Identities=24% Similarity=0.369 Sum_probs=199.4
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCcC
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYYG 84 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~G 84 (236)
..+||+|||+.+ .++++.+|..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+|
T Consensus 38 ~~~iPvIDls~~-~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~G 116 (361)
T PLN02276 38 ELAVPLIDLGGF-LSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMDAFFKLPLSEKQRAQRKPGESCG 116 (361)
T ss_pred CCCCCeEEChhh-cCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccc
Confidence 357999999996 4444456788999999999999999999999999999999999999999999999998754 46789
Q ss_pred ccCCCC----CCCcceeeeeccCCCCc---ccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hh
Q 045288 85 YLGNNP----LVPAIYEGMGVDYANTI---EGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KY 156 (236)
Q Consensus 85 Y~~~~~----~~~d~~E~~~~~~~~~~---~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~ 156 (236)
|.+... +..||+|.|.++..... .......+|.||+..++||+.+++|+..|.+++..||++|+++||++ ++
T Consensus 117 Y~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 196 (361)
T PLN02276 117 YASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYCEAMKTLSLKIMELLGISLGVDRGY 196 (361)
T ss_pred cCccCccccCCCCCeeeeEEEeccCcccccccchhcccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 987644 34589999999754321 11122345789987889999999999999999999999999999999 89
Q ss_pred hHHhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 157 YDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 157 ~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
|.+.+..+.+.||++|||+++.++..+|+++|||+|+||||+|++++||||+ ++|+|++|+| .||++|||+||+||+
T Consensus 197 f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~-~~g~Wi~V~p-~pgalVVNiGD~L~~ 273 (361)
T PLN02276 197 YRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSLTILHQDQVGGLQVF-VDNKWRSVRP-RPGALVVNIGDTFMA 273 (361)
T ss_pred HHHHhcCccceeeeEeCCCCCCcccccCCccccCCceeEEEEecCCCceEEE-ECCEEEEcCC-CCCeEEEEcHHHHHH
Confidence 9999888889999999999988888999999999999999999999999997 7899999999 999999999999986
No 4
>PLN02216 protein SRG1
Probab=100.00 E-value=3e-56 Score=388.53 Aligned_cols=221 Identities=19% Similarity=0.306 Sum_probs=193.1
Q ss_pred CCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCcCc
Q 045288 7 PKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYYGY 85 (236)
Q Consensus 7 ~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~GY 85 (236)
.+||+|||+.+ .+ + +.+.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||
T Consensus 51 ~~iPvIDls~~-~~-~-~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy 127 (357)
T PLN02216 51 SEIPIIDMKRL-CS-S-TAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGF 127 (357)
T ss_pred CCCCeEEChhc-cC-C-ccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcCCCCcccc
Confidence 57999999985 22 2 23456899999999999999999999999999999999999999999999999754 356788
Q ss_pred cCCCC----CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHh
Q 045288 86 LGNNP----LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDSV 160 (236)
Q Consensus 86 ~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~ 160 (236)
..... +..||+|.|.+...+. ....+|.||+.+++||+.+++|+.+|++++..|+++|+++||++ ++|.+.
T Consensus 128 ~~~~~~~~~~~~d~~e~~~~~~~p~----~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~ 203 (357)
T PLN02216 128 GQAFVVSEDQKLDWADMFFLTMQPV----RLRKPHLFPKLPLPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKL 203 (357)
T ss_pred CccccccccccCCceeeeeeeccCc----ccccchhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 65432 3458999998764321 23457899998899999999999999999999999999999999 899888
Q ss_pred hcC-cccceeccccCCCCCCCCCcccccccCCCceeEEee-CCCCceeEEcCCCCeEeccCCCCCeEEEecCcccccC
Q 045288 161 LES-STYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQ-NEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLVG 236 (236)
Q Consensus 161 ~~~-~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~-~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~~ 236 (236)
++. ..+.||++|||||+.++..+|+++|||+|+||||+| ++++||||+ ++|+|++|+| .||++|||+||+||+.
T Consensus 204 ~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~-~~g~Wi~V~p-~pgalvVNiGD~L~~~ 279 (357)
T PLN02216 204 FDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIK-KDGKWVSVKP-LPNALVVNVGDILEII 279 (357)
T ss_pred hccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEE-ECCEEEECCC-CCCeEEEEcchhhHhh
Confidence 875 457899999999998888999999999999999999 579999996 7999999999 9999999999999973
No 5
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.6e-56 Score=385.86 Aligned_cols=225 Identities=24% Similarity=0.360 Sum_probs=195.0
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCcC
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYYG 84 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~G 84 (236)
..+||+|||+.+ ++.++.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++... ...+|
T Consensus 24 ~~~iPvIDls~~----~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~G 99 (345)
T PLN02750 24 DEEIPVIDLSVS----TSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFFDQTTEEKRKVKRDEVNPMG 99 (345)
T ss_pred CCCCCeEECCCC----CcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccC
Confidence 458999999984 2345778899999999999999999999999999999999999999999999998654 34579
Q ss_pred ccCCCC--CCCcceeeeeccCCCC--cc-----cc--cCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 045288 85 YLGNNP--LVPAIYEGMGVDYANT--IE-----GT--QNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGV 153 (236)
Q Consensus 85 Y~~~~~--~~~d~~E~~~~~~~~~--~~-----~~--~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl 153 (236)
|..... +..|++|.|.++.... .+ .. ....+|.||+.+++||+.+++|++.|.+|+..|+++|+++||+
T Consensus 100 Y~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl 179 (345)
T PLN02750 100 YHDSEHTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLLELISLSLGL 179 (345)
T ss_pred cCcccccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 974332 3468999998864311 01 00 0112689999889999999999999999999999999999999
Q ss_pred C-hhhHHhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEc-CCCCeEeccCCCCCeEEEecCc
Q 045288 154 D-KYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRT-KDGCWIGFDDPTPSSFIVLAGD 231 (236)
Q Consensus 154 ~-~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~-~~g~W~~v~p~~~~~~iVn~Gd 231 (236)
+ ++|.+.+..+.+.+|++||||++.++..+|+++|||+|+||+|+||+++||||+. ++|+|++|+| .||++|||+||
T Consensus 180 ~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~~~g~Wi~V~p-~pg~~vVNiGD 258 (345)
T PLN02750 180 PADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRHKDGGALTVLAQDDVGGLQISRRSDGEWIPVKP-IPDAFIINIGN 258 (345)
T ss_pred CHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCCCCCCeEEEEecCCCCceEEeecCCCeEEEccC-CCCeEEEEhHH
Confidence 9 8999999888899999999999887788999999999999999999999999974 6899999999 99999999999
Q ss_pred cccc
Q 045288 232 AFLV 235 (236)
Q Consensus 232 ~le~ 235 (236)
+||+
T Consensus 259 ~L~~ 262 (345)
T PLN02750 259 CMQV 262 (345)
T ss_pred HHHH
Confidence 9986
No 6
>PLN02485 oxidoreductase
Probab=100.00 E-value=3.5e-56 Score=385.32 Aligned_cols=230 Identities=22% Similarity=0.376 Sum_probs=194.9
Q ss_pred CCCCCCceeeCCCCCCCC-------CcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhc
Q 045288 4 LSVPKLPVVNLSKENLKP-------GASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKN 76 (236)
Q Consensus 4 ~~~~~iPvIDl~~l~~~~-------~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~ 76 (236)
.+...||||||+.+ +.. .++++..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++
T Consensus 3 ~~~~~iPvIDl~~l-~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~ 81 (329)
T PLN02485 3 TDFKSIPVIDISPL-VAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKI 81 (329)
T ss_pred CCCCCCCeEechhh-hccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhh
Confidence 35678999999986 331 1224667899999999999999999999999999999999999999999999998
Q ss_pred CCC--CCCcCccCCCC----CCCcceeeeeccCCCCcc-----cccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Q 045288 77 VSE--KPYYGYLGNNP----LVPAIYEGMGVDYANTIE-----GTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKR 145 (236)
Q Consensus 77 ~~~--~~~~GY~~~~~----~~~d~~E~~~~~~~~~~~-----~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~ 145 (236)
... ...+||.+.+. +..|++|.|.+....... ......+|.||+.+++||+.+++|++.|.+++..|++
T Consensus 82 ~~~~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~ 161 (329)
T PLN02485 82 KMTPAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRKILR 161 (329)
T ss_pred cccCCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 754 35689987654 456899999886531110 1123457999998899999999999999999999999
Q ss_pred HHHHHcCCC-hhhHHhh-cCcccceeccccCCCCC----CCCCcccccccCCCceeEEeeC-CCCceeEEcCCCCeEecc
Q 045288 146 MVFESYGVD-KYYDSVL-ESSTYLLRIMKYRCPET----NEKNLGCDVHTDKSFITVLHQN-EVNGLEIRTKDGCWIGFD 218 (236)
Q Consensus 146 ~l~~~Lgl~-~~~~~~~-~~~~~~lr~~~Yp~~~~----~~~~~~~~~HtD~~~lT~L~~~-~~~GLqv~~~~g~W~~v~ 218 (236)
+++++||++ ++|.+.+ ....+.+|++|||+++. ++..+|+++|||+|+||||+|+ +++||||++++|+|++|+
T Consensus 162 ~~a~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~V~ 241 (329)
T PLN02485 162 GIALALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCGAHTDYGLLTLVNQDDDITALQVRNLSGEWIWAI 241 (329)
T ss_pred HHHHHcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccccccCCCeEEEEeccCCCCeeeEEcCCCcEEECC
Confidence 999999999 8886654 45667899999999875 4568999999999999999997 589999998899999999
Q ss_pred CCCCCeEEEecCccccc
Q 045288 219 DPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 219 p~~~~~~iVn~Gd~le~ 235 (236)
| .||++|||+||+||+
T Consensus 242 p-~pg~~vVNiGD~L~~ 257 (329)
T PLN02485 242 P-IPGTFVCNIGDMLKI 257 (329)
T ss_pred C-CCCcEEEEhHHHHHH
Confidence 9 999999999999985
No 7
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=7.5e-56 Score=386.53 Aligned_cols=224 Identities=25% Similarity=0.382 Sum_probs=196.2
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCcC
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYYG 84 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~G 84 (236)
..+||+|||+.+ ..++.+++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+|
T Consensus 50 ~~~IPvIDl~~l-~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~G 128 (361)
T PLN02758 50 PDDIPVIDFSRL-VKGDNDELFSEILKLRLACEEWGFFQVINHGIELELLEEIEKVAREFFMLPLEEKQKYPMAPGTVQG 128 (361)
T ss_pred CCCCCeEEchhh-cCCChHHHHHHHHHHHHHHHhCeEEEEecCCCCHHHHHHHHHHHHHHhcCCHHHHHHhcccCCCccc
Confidence 457999999986 3434445667899999999999999999999999999999999999999999999999754 45789
Q ss_pred ccCCC----CCCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHH
Q 045288 85 YLGNN----PLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDS 159 (236)
Q Consensus 85 Y~~~~----~~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~ 159 (236)
|.... ....||+|.|.++..... ...+|.||+.+++||+.+++|+.+|++++..|+++|+++||++ ++|.+
T Consensus 129 Y~~~~~~~~~~~~d~~e~~~~~~~p~~----~~~~~~WP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~ 204 (361)
T PLN02758 129 YGQAFVFSEDQKLDWCNMFALGVEPHF----IRNPKLWPTKPARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEE 204 (361)
T ss_pred cCcccccccccccCeeEEEEeeccCcc----ccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHH
Confidence 97543 234589999988743211 1246899998899999999999999999999999999999999 89999
Q ss_pred hhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCC--CCceeEEcCCCCeEeccCCCCCeEEEecCcccccC
Q 045288 160 VLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNE--VNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLVG 236 (236)
Q Consensus 160 ~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~--~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~~ 236 (236)
.+....+.||++|||+|+.++..+|+++|||+|+||||+|++ ++||||+ ++|+|++|+| .||++|||+||+||+.
T Consensus 205 ~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~~~v~GLQV~-~~g~Wi~V~p-~pgalVVNiGD~L~~~ 281 (361)
T PLN02758 205 MFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGKGSCVGLQIL-KDNTWVPVHP-VPNALVINIGDTLEVL 281 (361)
T ss_pred HhcCccceeeeecCCCCCCcccccCccCccCCceeEEEEeCCCCCCCeeee-eCCEEEeCCC-CCCeEEEEccchhhhh
Confidence 888888899999999999888899999999999999999984 7899996 5799999999 9999999999999973
No 8
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=1.1e-55 Score=384.60 Aligned_cols=222 Identities=22% Similarity=0.272 Sum_probs=192.9
Q ss_pred CCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCcCc
Q 045288 7 PKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYYGY 85 (236)
Q Consensus 7 ~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~GY 85 (236)
..||+|||+.+ .+++++|.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+||
T Consensus 36 ~~iPvIDls~~--~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy 113 (358)
T PLN02515 36 DEIPVISLAGI--DEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLARDFFALPAEEKLRFDMSGGKKGGF 113 (358)
T ss_pred CCCCEEEChhc--cCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhCcCCCCccCc
Confidence 46999999985 334556788999999999999999999999999999999999999999999999998654 345799
Q ss_pred cCCCC----CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHh
Q 045288 86 LGNNP----LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDSV 160 (236)
Q Consensus 86 ~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~ 160 (236)
..... +..||+|.|.+..... .....|.||+.+++||+.+++|+++|.+|+..|+++++++||++ ++|.+.
T Consensus 114 ~~~~~~~~~~~~d~kE~~~~~~~~~----~~~~~n~WP~~~~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~ 189 (358)
T PLN02515 114 IVSSHLQGEAVQDWREIVTYFSYPV----RTRDYSRWPDKPEGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKA 189 (358)
T ss_pred ccccccccccccCceeeeccccCcc----cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHh
Confidence 63221 3468999987642211 11224889998899999999999999999999999999999999 899888
Q ss_pred hcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCC-CeEeccCCCCCeEEEecCccccc
Q 045288 161 LESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDG-CWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 161 ~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g-~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
+....+.+|++|||+|+.++..+|+++|||+|+||||+||+++||||+.++| +|++|+| .||++|||+||+||+
T Consensus 190 ~~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~~~~~~Wi~Vpp-~pgalVVNiGD~L~~ 264 (358)
T PLN02515 190 CVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGKTWITVQP-VEGAFVVNLGDHGHY 264 (358)
T ss_pred hcCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEecCCCCceEEEECCCCeEEECCC-CCCeEEEEccHHHHH
Confidence 8777789999999999888889999999999999999999999999986654 7999999 999999999999986
No 9
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=1.1e-55 Score=384.57 Aligned_cols=214 Identities=22% Similarity=0.388 Sum_probs=188.0
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCcC
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYYG 84 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~G 84 (236)
..+||||||+.. .++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...+|
T Consensus 54 ~~~iPvIDl~~~----------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~G 123 (358)
T PLN02254 54 DESIPVIDLSDP----------NALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSG 123 (358)
T ss_pred CCCCCeEeCCCH----------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCccc
Confidence 357999999752 3689999999999999999999999999999999999999999999998754 35678
Q ss_pred ccCCCC----CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHH
Q 045288 85 YLGNNP----LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDS 159 (236)
Q Consensus 85 Y~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~ 159 (236)
|..... .+.||+|.|.+..... ....|.||+.+++||+.+++|+++|++|+..|+++|+++||++ ++|.+
T Consensus 124 y~~~~~~~~~~~~~w~e~~~~~~~p~-----~~~~~~wP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~ 198 (358)
T PLN02254 124 YGVARISSFFNKKMWSEGFTIMGSPL-----EHARQLWPQDHTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKW 198 (358)
T ss_pred ccccccccccCCCCceeeEEeecCcc-----ccchhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 876433 3458999998864221 1235899998999999999999999999999999999999999 88876
Q ss_pred hh-----cCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCcccc
Q 045288 160 VL-----ESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFL 234 (236)
Q Consensus 160 ~~-----~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le 234 (236)
.+ ..+.+.+|++|||||+.++..+|+++|||+|+||||+||+++||||+..+|+|++|+| .||++|||+||+||
T Consensus 199 ~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTiL~Qd~v~GLQV~~~~~~Wi~V~p-~pgalVVNiGD~lq 277 (358)
T PLN02254 199 AGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTILYQSNTSGLQVFREGVGWVTVPP-VPGSLVVNVGDLLH 277 (358)
T ss_pred HhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEEEecCCCCCceEECCCCEEEEccc-CCCCEEEEhHHHHH
Confidence 55 4566899999999999888899999999999999999999999999876668999999 99999999999998
Q ss_pred c
Q 045288 235 V 235 (236)
Q Consensus 235 ~ 235 (236)
+
T Consensus 278 ~ 278 (358)
T PLN02254 278 I 278 (358)
T ss_pred H
Confidence 6
No 10
>PLN02997 flavonol synthase
Probab=100.00 E-value=2e-55 Score=378.59 Aligned_cols=217 Identities=24% Similarity=0.379 Sum_probs=189.8
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCCCCcCc
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGY 85 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~GY 85 (236)
..+||||||+.+ +++.++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++......+||
T Consensus 30 ~~~IPvIDls~~-------~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~GY 102 (325)
T PLN02997 30 AVDVPVVDLSVS-------DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAKEEDFEGY 102 (325)
T ss_pred CCCCCeEECCCC-------CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCcccc
Confidence 347999999973 2457899999999999999999999999999999999999999999999999876668999
Q ss_pred cCCCC-CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHhhcC
Q 045288 86 LGNNP-LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDSVLES 163 (236)
Q Consensus 86 ~~~~~-~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~~~~ 163 (236)
.+... +..|++|.+....... . ....|.||+.+++||+.+++|++.|.+++..|+++|+++||++ ++|.+.+..
T Consensus 103 ~~~~~~~~~d~~e~~~~~~~p~--~--~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~ 178 (325)
T PLN02997 103 KRNYLGGINNWDEHLFHRLSPP--S--IINYKYWPKNPPQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGG 178 (325)
T ss_pred CcccccCCCCccceeEeeecCc--c--ccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcC
Confidence 87543 5568999865432111 1 1234889998899999999999999999999999999999999 889887764
Q ss_pred --cccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 164 --STYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 164 --~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
+.+.||++||||++.++..+|+++|||+|+||||+||+++||||+ ++|+|++|+| .||++|||+||+||+
T Consensus 179 ~~~~~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~-~~g~Wi~V~p-~pgalvVNiGD~Le~ 250 (325)
T PLN02997 179 ETAEYVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIPNEVPGLQAF-KDEQWLDLNY-INSAVVVIIGDQLMR 250 (325)
T ss_pred CcccceeeeecCCCCCCcccccCccCccCCCceEEEecCCCCCEEEe-ECCcEEECCC-CCCeEEEEechHHHH
Confidence 345899999999988888899999999999999999999999997 5899999999 999999999999986
No 11
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2e-55 Score=380.37 Aligned_cols=223 Identities=19% Similarity=0.329 Sum_probs=191.7
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCCCCcC
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYG 84 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~G 84 (236)
+...||+|||+.. ++..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.....++|
T Consensus 11 ~~~~iP~IDl~~~-------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~G 83 (332)
T PLN03002 11 KVSSLNCIDLAND-------DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRG 83 (332)
T ss_pred CCCCCCEEeCCch-------hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCC
Confidence 4668999999852 245689999999999999999999999999999999999999999999999976666899
Q ss_pred ccCCCCC--------CCcceeeeeccCCC--Cccc--ccCCCCCCCCCC--CccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045288 85 YLGNNPL--------VPAIYEGMGVDYAN--TIEG--TQNFTNLIWPEG--NENFCKTVVSYSRLVSELEQMVKRMVFES 150 (236)
Q Consensus 85 Y~~~~~~--------~~d~~E~~~~~~~~--~~~~--~~~~~~~~wP~~--~~~f~~~~~~y~~~~~~l~~~ll~~l~~~ 150 (236)
|.+.+.+ ..|++|.|.++... +... ...+++|.||+. .++||+.+++|++.|.+|+..|+++|+++
T Consensus 84 Y~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~ 163 (332)
T PLN03002 84 YTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALA 163 (332)
T ss_pred cCcccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876442 25899999988532 1111 123457999984 78999999999999999999999999999
Q ss_pred cCCC-hhhHH--hhcCcccceeccccCCCCCCC-CCcccccccCCCceeEEeeCCCCceeEEcC----CCCeEeccCCCC
Q 045288 151 YGVD-KYYDS--VLESSTYLLRIMKYRCPETNE-KNLGCDVHTDKSFITVLHQNEVNGLEIRTK----DGCWIGFDDPTP 222 (236)
Q Consensus 151 Lgl~-~~~~~--~~~~~~~~lr~~~Yp~~~~~~-~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~----~g~W~~v~p~~~ 222 (236)
||++ ++|.+ .+..+.+.||++|||+++.++ ..+|+++|||+|+||||+||+++||||+.. +|+|++|+| .|
T Consensus 164 Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp-~p 242 (332)
T PLN03002 164 LDLDVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPP-IK 242 (332)
T ss_pred cCCChHHhccccccCCCchheeeeeCCCCCCcccCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCC-CC
Confidence 9999 88875 455567889999999997654 589999999999999999999999999754 478999999 99
Q ss_pred CeEEEecCccccc
Q 045288 223 SSFIVLAGDAFLV 235 (236)
Q Consensus 223 ~~~iVn~Gd~le~ 235 (236)
|++|||+||+||+
T Consensus 243 g~~VVNiGD~L~~ 255 (332)
T PLN03002 243 GAFIVNLGDMLER 255 (332)
T ss_pred CeEEEEHHHHHHH
Confidence 9999999999986
No 12
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=1.9e-55 Score=384.27 Aligned_cols=224 Identities=23% Similarity=0.313 Sum_probs=193.0
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCC---C
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEK---P 81 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~ 81 (236)
+...||+|||+.+ .+++.++|..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.... .
T Consensus 44 ~~~~iPvIDls~~-~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~ 122 (360)
T PLN03178 44 AGPQVPVVDLSNI-ESDDEVVREACVEAVRAAAAEWGVMHLVGHGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGA 122 (360)
T ss_pred cCCCCCEEEchhh-cCCChhhHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCC
Confidence 3458999999996 34444557889999999999999999999999999999999999999999999999997642 4
Q ss_pred CcCccCCCC----CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hh
Q 045288 82 YYGYLGNNP----LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KY 156 (236)
Q Consensus 82 ~~GY~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~ 156 (236)
++||..... +..||+|.|........ ...+|.||+..++||+.+++|++.|++++..|+++|+++||++ ++
T Consensus 123 ~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~----~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~ 198 (360)
T PLN03178 123 AQGYGSKLAANASGQLEWEDYFFHLTLPED----KRDPSLWPKTPPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDR 198 (360)
T ss_pred ccccccccccccccccchhHhhccccCCcc----ccccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 789965422 33578887654321111 1236899998999999999999999999999999999999999 89
Q ss_pred hHHhhc---CcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCccc
Q 045288 157 YDSVLE---SSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAF 233 (236)
Q Consensus 157 ~~~~~~---~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~l 233 (236)
|.+.+. ...+.+|++|||+++.++..+|+++|||+|+||||+||+++||||+ ++|+|++|+| .||++|||+||+|
T Consensus 199 f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~v~GLQV~-~~g~Wi~V~p-~pg~lvVNiGD~L 276 (360)
T PLN03178 199 LEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTFILHNMVPGLQVL-YEGKWVTAKC-VPDSIVVHIGDTL 276 (360)
T ss_pred HHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEEEeeCCCCceeEe-ECCEEEEcCC-CCCeEEEEccHHH
Confidence 988886 3457899999999998888999999999999999999999999997 5899999999 9999999999999
Q ss_pred cc
Q 045288 234 LV 235 (236)
Q Consensus 234 e~ 235 (236)
|+
T Consensus 277 ~~ 278 (360)
T PLN03178 277 EI 278 (360)
T ss_pred HH
Confidence 86
No 13
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.8e-55 Score=379.22 Aligned_cols=223 Identities=20% Similarity=0.293 Sum_probs=190.3
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCc
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYY 83 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~ 83 (236)
+.++||+|||+.+ +++ ++.+..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++... ...+
T Consensus 41 ~~~~IPvIDls~~-~~~-~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~eeK~~~~~~~~~~~ 118 (348)
T PLN00417 41 PEMDIPAIDLSLL-LSS-SDDGREELSKLHSALSTWGVVQVMNHGITEAFLDKIYKLTKQFFALPTEEKQKCAREIGSIQ 118 (348)
T ss_pred cCCCCCeEEChhh-cCC-CchHHHHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhcCCCCcc
Confidence 3458999999986 443 333444579999999999999999999999999999999999999999999999765 3578
Q ss_pred CccCCC----CCCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhH
Q 045288 84 GYLGNN----PLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYD 158 (236)
Q Consensus 84 GY~~~~----~~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~ 158 (236)
||.+.. .+..|++|.+.+...... ....|.||+.+++||+.+++|+..|.+++..|+++|+++||++ ++|.
T Consensus 119 GY~~~~~~~~~~~~d~~e~~~~~~~p~~----~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~ 194 (348)
T PLN00417 119 GYGNDMILSDDQVLDWIDRLYLTTYPED----QRQLKFWPQVPVGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFL 194 (348)
T ss_pred ccccccccccCCCcCccceeecccCCcc----cccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 997532 234578888776532211 1235899998899999999999999999999999999999999 8888
Q ss_pred HhhcC-cccceeccccCCCCCCCCCcccccccCCCceeEEeeC-CCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 159 SVLES-STYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQN-EVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 159 ~~~~~-~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~-~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
+.+.. ..+.||++||||++.++.++|+++|||+|+||||+|+ +++||||+ ++|+|++|+| .||++|||+||+||+
T Consensus 195 ~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p-~pg~lVVNiGD~Le~ 271 (348)
T PLN00417 195 EMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVEGLQFL-KDGKWYKAPI-VPDTILINVGDQMEI 271 (348)
T ss_pred HHhccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEecCCCCceeEe-ECCeEEECCC-CCCcEEEEcChHHHH
Confidence 87765 3467999999999888788999999999999999996 69999996 7899999999 999999999999986
No 14
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=7.6e-55 Score=380.55 Aligned_cols=225 Identities=24% Similarity=0.353 Sum_probs=194.5
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-CCCc
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-KPYY 83 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~ 83 (236)
+.++||+|||+.+ .+++.++|..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ..++
T Consensus 48 ~~~~iPvIDls~l-~~~~~~~r~~~~~~l~~Ac~~~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~ 126 (362)
T PLN02393 48 AEINIPVIDLSSL-FSDDARLRDATLRAISEACREWGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYANSPATYE 126 (362)
T ss_pred cCCCCCeEECccc-cCCChHHHHHHHHHHHHHHHHCcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhcccCccc
Confidence 4468999999996 3444456788999999999999999999999999999999999999999999999999854 3578
Q ss_pred Ccc-CCCC---CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhH
Q 045288 84 GYL-GNNP---LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYD 158 (236)
Q Consensus 84 GY~-~~~~---~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~ 158 (236)
||. ..+. +..||+|.|.+..... ....+|.||+.+++||+.+++|++.|.+++..|+++++++||++ ++|.
T Consensus 127 Gy~~~~~~~~~~~~d~~e~~~~~~~~~----~~~~~n~wP~~~~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~ 202 (362)
T PLN02393 127 GYGSRLGVEKGAILDWSDYYFLHYLPS----SLKDPNKWPSLPPSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQ 202 (362)
T ss_pred ccccccccccccccCchhheeeeecCc----cccchhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 994 3332 3458999887763211 12346889998899999999999999999999999999999999 8898
Q ss_pred HhhcCc---ccceeccccCCCCCCCCCcccccccCCCceeEEeeC-CCCceeEEcCCCCeEeccCCCCCeEEEecCcccc
Q 045288 159 SVLESS---TYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQN-EVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFL 234 (236)
Q Consensus 159 ~~~~~~---~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~-~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le 234 (236)
+.+... .+.+|++|||+++.++..+|+++|||+|+||||+|+ +++||||+ ++|+|++|+| .||++|||+||+||
T Consensus 203 ~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~q~~~v~GLQV~-~~g~W~~V~p-~pgalVVNiGD~l~ 280 (362)
T PLN02393 203 NAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILLPDDNVAGLQVR-RDDAWITVKP-VPDAFIVNIGDQIQ 280 (362)
T ss_pred HHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEeeCCCCCcceee-ECCEEEECCC-CCCeEEEEcchhhH
Confidence 887643 378999999999888889999999999999999984 68999997 7899999999 99999999999998
Q ss_pred cC
Q 045288 235 VG 236 (236)
Q Consensus 235 ~~ 236 (236)
+.
T Consensus 281 ~~ 282 (362)
T PLN02393 281 VL 282 (362)
T ss_pred hh
Confidence 63
No 15
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.4e-54 Score=376.93 Aligned_cols=219 Identities=24% Similarity=0.286 Sum_probs=188.4
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC---CCC
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE---KPY 82 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~---~~~ 82 (236)
..+||+|||+.+ .+ +++.+++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ...
T Consensus 39 ~~~iPvIDls~~--~~--~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~ 114 (348)
T PLN02912 39 GDSIPLIDLRDL--HG--PNRADIINQFAHACSSYGFFQIKNHGVPEETIKKMMNVAREFFHQSESERVKHYSADTKKTT 114 (348)
T ss_pred CCCCCeEECccc--CC--cCHHHHHHHHHHHHHHCCEEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHHhHhhcCCCCcc
Confidence 457999999985 22 23677899999999999999999999999999999999999999999999996432 123
Q ss_pred cCccCCC---CCCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhH
Q 045288 83 YGYLGNN---PLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYD 158 (236)
Q Consensus 83 ~GY~~~~---~~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~ 158 (236)
+||.... .+..||+|.+.+...... ...|.||+.+++||+.+++|++.|.+++..|+++++++||++ ++|.
T Consensus 115 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~-----~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~ 189 (348)
T PLN02912 115 RLSTSFNVSKEKVSNWRDFLRLHCYPIE-----DFIEEWPSTPISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVS 189 (348)
T ss_pred cccccccccccccCCchheEEEeecCcc-----cccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 4444332 134578898877532111 125889998899999999999999999999999999999999 8898
Q ss_pred HhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 159 SVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 159 ~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
+.+....+.||++||||++.++..+|+++|||+|+||||+||+++||||+ ++|+|++|+| .||++|||+||+||+
T Consensus 190 ~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Qd~v~GLQV~-~~g~Wi~V~p-~pgalvVNiGD~L~~ 264 (348)
T PLN02912 190 NTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQDEVSGLQVF-KDGKWIAVNP-IPNTFIVNLGDQMQV 264 (348)
T ss_pred HHhcCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEECCCCceEEE-ECCcEEECCC-cCCeEEEEcCHHHHH
Confidence 88887788999999999988778999999999999999999999999997 6899999999 999999999999986
No 16
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=2.4e-54 Score=370.74 Aligned_cols=224 Identities=33% Similarity=0.511 Sum_probs=195.2
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCC-CCcC
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEK-PYYG 84 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~G 84 (236)
..+||+|||+.+. .... .+..++++|.+||++||||+|+||||+.++++++++.+++||+||.|+|+++.... ...|
T Consensus 15 ~~~iPvIDls~~~-~~~~-~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~~~~~g 92 (322)
T KOG0143|consen 15 ELDIPVIDLSCLD-SDDP-GREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEPGKYRG 92 (322)
T ss_pred CCCcCeEECCCCC-Ccch-hHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCCCCccc
Confidence 5689999999752 2222 56788999999999999999999999999999999999999999999999999876 6789
Q ss_pred ccCCCC----CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHH
Q 045288 85 YLGNNP----LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDS 159 (236)
Q Consensus 85 Y~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~ 159 (236)
|..... ...+|.+.+.+..... ..+..+.||+.++.||+.+++|.+++.+++..|+++|+++||++ .++.+
T Consensus 93 Y~~~~~~~~~~~~~w~d~~~~~~~p~----~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~ 168 (322)
T KOG0143|consen 93 YGTSFILSPLKELDWRDYLTLLSAPE----SSFDPNLWPEGPPEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEK 168 (322)
T ss_pred ccccccccccccccchhheeeeccCc----cccCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 976543 2345777766443221 11456889999999999999999999999999999999999999 77777
Q ss_pred hhcC-cccceeccccCCCCCCCCCcccccccCCCceeEEeeC-CCCceeEEcCCCCeEeccCCCCCeEEEecCcccccC
Q 045288 160 VLES-STYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQN-EVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLVG 236 (236)
Q Consensus 160 ~~~~-~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~-~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~~ 236 (236)
.++. ....+|++|||||++|+.++|+++|||.++||+|+|| +++||||+.++|+|++|+| .||++|||+||+||++
T Consensus 169 ~~~~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd~~V~GLQv~~~dg~Wi~V~P-~p~a~vVNiGD~l~~l 246 (322)
T KOG0143|consen 169 LFGETGGQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQDDDVGGLQVFTKDGKWIDVPP-IPGAFVVNIGDMLQIL 246 (322)
T ss_pred hhCCccceEEEEeecCCCcCccccccccCccCcCceEEEEccCCcCceEEEecCCeEEECCC-CCCCEEEEcccHHhHh
Confidence 7776 4669999999999999999999999999999999998 8999999767899999999 9999999999999985
No 17
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=1.4e-54 Score=373.05 Aligned_cols=217 Identities=20% Similarity=0.298 Sum_probs=188.0
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCCCCcC
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYG 84 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~G 84 (236)
+.++||+|||+.+ . ++++..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.. ..+|
T Consensus 3 ~~~~iPvIDls~~--~--~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~--~~~g 76 (321)
T PLN02299 3 KMESFPVIDMEKL--N--GEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMV--ASKG 76 (321)
T ss_pred CCCCCCEEECcCC--C--cccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhccc--CCCC
Confidence 4567999999985 2 23467789999999999999999999999999999999999999999999999754 2467
Q ss_pred ccCCCC--CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHhh
Q 045288 85 YLGNNP--LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDSVL 161 (236)
Q Consensus 85 Y~~~~~--~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~~ 161 (236)
|.+... ...||+|.|.+..... ...+.||+.+++||+.+++|++.|.+++..|+++|+++||++ ++|.+.+
T Consensus 77 y~~~~~~~~~~d~ke~~~~~~~~~------~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~ 150 (321)
T PLN02299 77 LEGVQTEVEDLDWESTFFLRHLPE------SNLADIPDLDDEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAF 150 (321)
T ss_pred cccccccCCCcCHHHHcccccCCc------cccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 765543 3458999998863211 124779998899999999999999999999999999999999 8898877
Q ss_pred cC---cccceeccccCCCCCCCCCcccccccCCCceeEEeeC-CCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 162 ES---STYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQN-EVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 162 ~~---~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~-~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
.. ..+.+|++||||++.++...|+++|||+|+||||+|+ +++||||+ ++|+|++|+| .||++|||+||+||+
T Consensus 151 ~~~~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p-~pg~lvVNiGD~l~~ 226 (321)
T PLN02299 151 HGSKGPTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLFQDDKVSGLQLL-KDGEWVDVPP-MRHSIVVNLGDQLEV 226 (321)
T ss_pred cCCCCccceeeeEecCCCCCcccccCccCccCCCeEEEEEecCCCCCcCcc-cCCeEEECCC-CCCeEEEEeCHHHHH
Confidence 42 4457999999999988778899999999999999996 69999996 7899999999 999999999999986
No 18
>PLN02947 oxidoreductase
Probab=100.00 E-value=4.1e-54 Score=376.45 Aligned_cols=221 Identities=24% Similarity=0.351 Sum_probs=188.6
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC--CCC
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE--KPY 82 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~--~~~ 82 (236)
...+||+|||+.+ .+ +.+..++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... ...
T Consensus 63 ~~~~iPvIDls~l--~~--~~~~~~~~~l~~Ac~~~GFF~v~nHGIp~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~ 138 (374)
T PLN02947 63 GNLKLPVIDLAEL--RG--SNRPHVLATLAAACREYGFFQVVNHGVPSEVIGGMIDVARRFFELPLEERAKYMSADMRAP 138 (374)
T ss_pred CCCCCCeEECccc--CC--ccHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCC
Confidence 4468999999985 22 34678899999999999999999999999999999999999999999999998643 234
Q ss_pred cCccCCC----CCCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----
Q 045288 83 YGYLGNN----PLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD---- 154 (236)
Q Consensus 83 ~GY~~~~----~~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~---- 154 (236)
.||.... ....+|+|.+.+...... ...|.||+.+++||+.+++|++.|++|+..|+++|+++||++
T Consensus 139 ~gyg~~~~~~~~~~~~~~e~~~~~~~p~~-----~~~~~WP~~~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~ 213 (374)
T PLN02947 139 VRYGTSFNQNKDAVFCWRDFLKLVCHPLS-----DVLPHWPSSPADLRKVAATYAKATKRLFLELMEAILESLGIVKRGS 213 (374)
T ss_pred eeeccccccccccccCceeceeeecCCcc-----cccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccch
Confidence 5664321 134578888775532211 124789998899999999999999999999999999999996
Q ss_pred hhhHHhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCcccc
Q 045288 155 KYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFL 234 (236)
Q Consensus 155 ~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le 234 (236)
++|.+.+....+.+|++|||||++++..+|+++|||+|+||||+||+++||||+. +|+|++|+| .||++|||+||+||
T Consensus 214 ~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL~Qd~v~GLQV~~-~g~Wi~V~p-~pga~VVNvGD~Lq 291 (374)
T PLN02947 214 DELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLLLQDEVEGLQIMH-AGRWVTVEP-IPGSFVVNVGDHLE 291 (374)
T ss_pred HHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEEEecCCCCeeEeE-CCEEEeCCC-CCCeEEEEeCceee
Confidence 3566667777789999999999998889999999999999999999999999975 899999999 99999999999999
Q ss_pred cC
Q 045288 235 VG 236 (236)
Q Consensus 235 ~~ 236 (236)
+.
T Consensus 292 ~~ 293 (374)
T PLN02947 292 IF 293 (374)
T ss_pred ee
Confidence 73
No 19
>PLN02904 oxidoreductase
Probab=100.00 E-value=1.1e-53 Score=372.08 Aligned_cols=220 Identities=21% Similarity=0.268 Sum_probs=186.7
Q ss_pred CCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCC--CCcC
Q 045288 7 PKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEK--PYYG 84 (236)
Q Consensus 7 ~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~G 84 (236)
..||+|||+.+ .+ +..|..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.... ...|
T Consensus 50 ~~iPvIDls~~--~~-~~~r~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~ 126 (357)
T PLN02904 50 ITLPVIDLSLL--HD-PLLRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVR 126 (357)
T ss_pred CCCCEEECccc--CC-chhHHHHHHHHHHHHHHCceEEEEeCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCccc
Confidence 57999999985 32 3457788999999999999999999999999999999999999999999999986532 2234
Q ss_pred ccCCCC----CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHH
Q 045288 85 YLGNNP----LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDS 159 (236)
Q Consensus 85 Y~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~ 159 (236)
|..... ...+|+|.+....... . ...|.||+.+++||+.+++|++.|.+++..|+++||++||++ ++|.+
T Consensus 127 ~g~~~~~~~~~~~~~~d~~~~~~~p~----~-~~~n~WP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~ 201 (357)
T PLN02904 127 YGTSLNHSTDRVHYWRDFIKHYSHPL----S-KWINLWPSNPPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQE 201 (357)
T ss_pred ccccccccCCCCCCceEEeeeccCCc----c-cccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 432211 2235676654332111 1 125889998899999999999999999999999999999999 89988
Q ss_pred hhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCcccccC
Q 045288 160 VLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLVG 236 (236)
Q Consensus 160 ~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~~ 236 (236)
.+....+.||++|||||+.++..+|+++|||+|+||||+|+ .+||||++++|+|++|+| .||++|||+||+||+.
T Consensus 202 ~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd-~~GLQV~~~~g~Wi~V~p-~pgalVVNiGD~Le~~ 276 (357)
T PLN02904 202 EIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQS-SQGLQIMDCNKNWVCVPY-IEGALIVQLGDQVEVM 276 (357)
T ss_pred HhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEecC-CCeeeEEeCCCCEEECCC-CCCeEEEEccHHHHHH
Confidence 88877889999999999988889999999999999999997 489999988999999999 9999999999999963
No 20
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.2e-53 Score=366.74 Aligned_cols=216 Identities=26% Similarity=0.405 Sum_probs=186.4
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCC---CC
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEK---PY 82 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~~ 82 (236)
..+||+|||+.. ++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ..
T Consensus 35 ~~~iPvIDls~~-------~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~~~~~~~~ 107 (337)
T PLN02639 35 CENVPVIDLGSP-------DRAQVVQQIGDACRRYGFFQVINHGVSAELVEKMLAVAHEFFRLPVEEKMKLYSDDPTKTM 107 (337)
T ss_pred CCCCCeEECCCc-------cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHhhhhccCCCCcc
Confidence 457999999862 35678999999999999999999999999999999999999999999999976432 23
Q ss_pred cCccCCCC---CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhH
Q 045288 83 YGYLGNNP---LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYD 158 (236)
Q Consensus 83 ~GY~~~~~---~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~ 158 (236)
++|..... ...||+|.+.+..... ....|.||+.+++||+.+++|++.|.+++..|+++|+++||++ ++|.
T Consensus 108 ~~~~~~~~~~~~~~~~~e~~~~~~~p~-----~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~ 182 (337)
T PLN02639 108 RLSTSFNVRKEKVHNWRDYLRLHCYPL-----DKYVPEWPSNPPSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYIK 182 (337)
T ss_pred ccccccccccCcccCchheEEeeecCC-----cccchhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 34433322 2347888887743211 1125789998899999999999999999999999999999999 8998
Q ss_pred HhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeC-CCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 159 SVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQN-EVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 159 ~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~-~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
+.+..+.+.+|++|||+++.++..+|+++|||+|+||||+|+ .++||||+ ++|+|++|+| .||++|||+||+||+
T Consensus 183 ~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~qd~~v~GLQV~-~~g~Wi~V~p-~pg~lVVNiGD~L~~ 258 (337)
T PLN02639 183 NVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDQQVAGLQVL-KDGKWVAVNP-HPGAFVINIGDQLQA 258 (337)
T ss_pred HHhCCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEecCCcCceEee-cCCeEEeccC-CCCeEEEechhHHHH
Confidence 888888889999999999888888999999999999999998 49999996 6899999999 999999999999986
No 21
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=6.6e-53 Score=363.90 Aligned_cols=216 Identities=26% Similarity=0.395 Sum_probs=183.4
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCCCCcCc
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGY 85 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~GY 85 (236)
+..||+|||+.. .+.++|.+||++||||||+||||+.++++++++++++||+||.|+|+++... ..+||
T Consensus 24 ~~~iPvIDls~~----------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~~-~~~Gy 92 (335)
T PLN02156 24 PVLIPVIDLTDS----------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGPP-DPFGY 92 (335)
T ss_pred CCCCCcccCCCh----------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCCC-CCccc
Confidence 456999999851 2367899999999999999999999999999999999999999999998654 34588
Q ss_pred cCCCC---CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hhhHHh
Q 045288 86 LGNNP---LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD--KYYDSV 160 (236)
Q Consensus 86 ~~~~~---~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~--~~~~~~ 160 (236)
..... +..||+|.|.+....... .....|.||+.++.||+.+++|++.|++++..|+++|+++||++ ++|.+.
T Consensus 93 ~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~ 170 (335)
T PLN02156 93 GTKRIGPNGDVGWLEYILLNANLCLE--SHKTTAVFRHTPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKL 170 (335)
T ss_pred CccccCCCCCCCceeeEeeecCCccc--cccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHH
Confidence 54322 234799999887543211 11236889988889999999999999999999999999999996 578887
Q ss_pred hc--CcccceeccccCCCCCC--CCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 161 LE--SSTYLLRIMKYRCPETN--EKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 161 ~~--~~~~~lr~~~Yp~~~~~--~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
++ .+.+.||++|||+++.. +..+|+++|||+|+||||+||+++||||+.++|+|++|+| .||++|||+||+||+
T Consensus 171 ~~~~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~lTlL~Qd~v~GLQV~~~~g~Wi~Vpp-~pga~VVNiGD~l~~ 248 (335)
T PLN02156 171 VKVKESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLISLLRSNDTAGLQICVKDGTWVDVPP-DHSSFFVLVGDTLQV 248 (335)
T ss_pred hcCCCccceEeEEeCCCCCCCccccccCCCCccCCCceEEEEeCCCCceEEEeCCCCEEEccC-CCCcEEEEhHHHHHH
Confidence 75 34678999999999752 3579999999999999999999999999888999999999 999999999999986
No 22
>PLN02704 flavonol synthase
Probab=100.00 E-value=8.7e-53 Score=364.50 Aligned_cols=217 Identities=23% Similarity=0.360 Sum_probs=185.6
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC---CCC
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE---KPY 82 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~---~~~ 82 (236)
..+||+|||+.. ++.+++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++... ..+
T Consensus 40 ~~~iPvIDls~~-------~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~ 112 (335)
T PLN02704 40 DPQVPTIDLSDP-------DEEKLTRLIAEASKEWGMFQIVNHGIPSEVISKLQKVGKEFFELPQEEKEVYAKPPDSKSI 112 (335)
T ss_pred CCCCCeEECCCc-------cHHHHHHHHHHHHHHcCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCccc
Confidence 457999999873 2356889999999999999999999999999999999999999999999999754 246
Q ss_pred cCccCCCC----CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhh
Q 045288 83 YGYLGNNP----LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYY 157 (236)
Q Consensus 83 ~GY~~~~~----~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~ 157 (236)
+||..... +..+++|.+....... .....|.||+.+++||+.+++|++.|.+++..|+++|+++||++ ++|
T Consensus 113 ~Gy~~~~~~~~~~~~~~~d~~~~~~~p~----~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f 188 (335)
T PLN02704 113 EGYGTKLQKEPEGKKAWVDHLFHRIWPP----SAINYQFWPKNPPSYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDEL 188 (335)
T ss_pred ccccccccccccCcccceeeeEeeecCC----cccchhhCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 89975432 3446777664421111 01224789998899999999999999999999999999999999 888
Q ss_pred HHhhcC--cccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 158 DSVLES--STYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 158 ~~~~~~--~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
.+.+.. ..+.+|++||||++.++..+|+++|||+|+||||+|++++||||+ ++|+|++|+| .||++|||+||+||+
T Consensus 189 ~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~-~~g~Wi~V~p-~pg~lvVNvGD~L~~ 266 (335)
T PLN02704 189 KEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITILVPNEVQGLQVF-RDDHWFDVKY-IPNALVIHIGDQIEI 266 (335)
T ss_pred HHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCcceEEEecCCCCceeEe-ECCEEEeCCC-CCCeEEEEechHHHH
Confidence 887753 346899999999988888999999999999999999999999996 6899999999 999999999999986
No 23
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=2.2e-52 Score=356.95 Aligned_cols=212 Identities=26% Similarity=0.468 Sum_probs=178.5
Q ss_pred CCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCCCCcCcc
Q 045288 7 PKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGYL 86 (236)
Q Consensus 7 ~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~GY~ 86 (236)
..||||||+.+ . ..+++|.+||++||||||+||||+.++++++++++++||+||.|+|+++......+||.
T Consensus 4 ~~iPvIDls~~--~-------~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~GY~ 74 (300)
T PLN02365 4 VNIPTIDLEEF--P-------GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTDVILGSGYM 74 (300)
T ss_pred CCCCEEEChhh--H-------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccCCCCCCCCC
Confidence 34999999984 1 13589999999999999999999999999999999999999999999976555678998
Q ss_pred CCCCCCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-hhhHHhhcCc
Q 045288 87 GNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGV-D-KYYDSVLESS 164 (236)
Q Consensus 87 ~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl-~-~~~~~~~~~~ 164 (236)
+.+.. .+++|.|.+.......... ..++.| +.+++||+.+++|++.|++++..|+++|+++||+ + ++|.+.
T Consensus 75 ~~~~~-~~~~e~~~~~~~~~~~~~~-~~~~~~-~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~---- 147 (300)
T PLN02365 75 APSEV-NPLYEALGLYDMASPQAVD-TFCSQL-DASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGW---- 147 (300)
T ss_pred CcCCC-CCchhheecccccCchhhh-hccccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhc----
Confidence 77643 4588988776321111100 111223 3468899999999999999999999999999999 6 677653
Q ss_pred ccceeccccCCCCCCCCCcccccccCCCceeEEeeC-CCCceeEEcC-CCCeEeccCCCCCeEEEecCccccc
Q 045288 165 TYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQN-EVNGLEIRTK-DGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 165 ~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~-~~~GLqv~~~-~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
.+.+|++|||+++.+++..|+++|||+|+||||+|| .++||||+++ +|+|++|+| .||++|||+||+||+
T Consensus 148 ~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd~~~~GLqV~~~~~g~Wi~V~p-~pga~vVNiGD~l~~ 219 (300)
T PLN02365 148 PSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSSGEFVPVDP-LPGTLLVNLGDVATA 219 (300)
T ss_pred ccceeeeecCCCCCccccccccCccCCCceEEEecCCCcCceEEEECCCCeEEecCC-CCCeEEEEhhHHHHH
Confidence 478999999999888889999999999999999998 4999999877 799999999 999999999999986
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=4.7e-52 Score=354.30 Aligned_cols=212 Identities=20% Similarity=0.243 Sum_probs=179.6
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCC-C--CCcC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSE-K--PYYG 84 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~--~~~G 84 (236)
+||+|||+.+ . +..|.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|...... . ..+|
T Consensus 2 ~iPvIDls~~--~--~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~~~~~~~~~~~~~~ 77 (303)
T PLN02403 2 EIPVIDFDQL--D--GEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESFYESEIAKALDNEG 77 (303)
T ss_pred CCCeEeCccC--C--cccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHhhcccccCcccccC
Confidence 6999999985 2 245678999999999999999999999999999999999999999999998621111 1 1223
Q ss_pred ccCCCCCCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHhhc-
Q 045288 85 YLGNNPLVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDSVLE- 162 (236)
Q Consensus 85 Y~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~~~- 162 (236)
| ....||+|.|.++.... ...|.||+.+|+||+.+++|++.|.+++..|+++++++||++ ++|.+.+.
T Consensus 78 ~----~~~~d~kE~~~~~~~p~------~~~~~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~ 147 (303)
T PLN02403 78 K----TSDVDWESSFFIWHRPT------SNINEIPNLSEDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSG 147 (303)
T ss_pred C----CCCccHhhhcccccCCc------cchhhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc
Confidence 2 23458999998874221 134789988899999999999999999999999999999999 88888775
Q ss_pred --CcccceeccccCCCCCCCCCcccccccCCCceeEEeeC-CCCceeEEcCCCCeEeccCCCC-CeEEEecCccccc
Q 045288 163 --SSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQN-EVNGLEIRTKDGCWIGFDDPTP-SSFIVLAGDAFLV 235 (236)
Q Consensus 163 --~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~-~~~GLqv~~~~g~W~~v~p~~~-~~~iVn~Gd~le~ 235 (236)
...+.+|++|||+++.++...|+++|||+|+||+|+|+ +++|||| .++|+|++|+| .| |++|||+||+||+
T Consensus 148 ~~~~~~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~q~~~v~GLqV-~~~g~Wi~V~p-~p~~~lvVNvGD~L~~ 222 (303)
T PLN02403 148 NKGPSVGTKVAKYPECPRPELVRGLREHTDAGGIILLLQDDQVPGLEF-LKDGKWVPIPP-SKNNTIFVNTGDQLEV 222 (303)
T ss_pred CCCccceeeeEcCCCCCCcccccCccCccCCCeEEEEEecCCCCceEe-ccCCeEEECCC-CCCCEEEEEehHHHHH
Confidence 33446999999999887778899999999999999997 5999999 47899999999 99 6999999999986
No 25
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.5e-51 Score=354.87 Aligned_cols=214 Identities=24% Similarity=0.381 Sum_probs=177.7
Q ss_pred CCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCCC----
Q 045288 6 VPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKP---- 81 (236)
Q Consensus 6 ~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~---- 81 (236)
...||+|||+.+ .+++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.....
T Consensus 36 ~~~IPvIDls~~-----------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~ 104 (341)
T PLN02984 36 DIDIPVIDMECL-----------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSY 104 (341)
T ss_pred cCCCCeEeCcHH-----------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCcc
Confidence 456999999974 25899999999999999999999999999999999999999999999862211
Q ss_pred CcCccCCCC-----------CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045288 82 YYGYLGNNP-----------LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKTVVSYSRLVSELEQMVKRMVFES 150 (236)
Q Consensus 82 ~~GY~~~~~-----------~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~ 150 (236)
.+||..... ...|++|.|.++...... ... .++ +|+..++||+.+++|+++|.+++..|+++||++
T Consensus 105 ~~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~~-~~~-~p~-~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~ 181 (341)
T PLN02984 105 FWGTPALTPSGKALSRGPQESNVNWVEGFNIPLSSLSL-LQT-LSC-SDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKT 181 (341)
T ss_pred ccCcccccccccccccccccCCCCeeeEEeCcCCchhh-hhh-cCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223321111 145899999987432110 000 011 123468899999999999999999999999999
Q ss_pred cCCC---hhhHHhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEE
Q 045288 151 YGVD---KYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIV 227 (236)
Q Consensus 151 Lgl~---~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iV 227 (236)
||++ ++|.+.+..+.+.||++|||||+.++..+|+++|||+|+||||+||+++||||+ ++|+|++|+| .||++||
T Consensus 182 Lgl~~~~~~f~~~~~~~~~~lRl~~YPp~~~~~~~~g~~aHTD~g~lTlL~Qd~v~GLQV~-~~g~Wv~V~p-~pgalVV 259 (341)
T PLN02984 182 LSLELSGDQKMSYLSESTGVIRVYRYPQCSNEAEAPGMEVHTDSSVISILNQDEVGGLEVM-KDGEWFNVKP-IANTLVV 259 (341)
T ss_pred cCCCcchhHHHHHhcCccceEEEEeCCCCCCcccccCccCccCCCceEEEEeCCCCCeeEe-eCCceEECCC-CCCeEEE
Confidence 9998 467888888888999999999988778899999999999999999999999996 6899999999 9999999
Q ss_pred ecCccccc
Q 045288 228 LAGDAFLV 235 (236)
Q Consensus 228 n~Gd~le~ 235 (236)
|+||+||+
T Consensus 260 NiGD~Le~ 267 (341)
T PLN02984 260 NLGDMMQV 267 (341)
T ss_pred ECChhhhh
Confidence 99999986
No 26
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.6e-41 Score=282.83 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=148.3
Q ss_pred HHHHHhhhC-CCHHHHhhcCCCC---CCcCccCCCC------CCCcceeeeeccCCCCcccccCCCCCCCCCCCccHHHH
Q 045288 59 FSAAEELFN-LPIEIKEKNVSEK---PYYGYLGNNP------LVPAIYEGMGVDYANTIEGTQNFTNLIWPEGNENFCKT 128 (236)
Q Consensus 59 ~~~~~~fF~-lp~e~K~~~~~~~---~~~GY~~~~~------~~~d~~E~~~~~~~~~~~~~~~~~~~~wP~~~~~f~~~ 128 (236)
.+.+++||+ ||.|+|+++.... ..+||..... ...||+|.|.+..... ....+|.||+.+++||+.
T Consensus 2 ~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~----~~~~~n~wP~~~~~f~~~ 77 (262)
T PLN03001 2 RSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPL----SRRNPSHWPDFPPDYREV 77 (262)
T ss_pred hHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCc----cccchhhCCCCcHHHHHH
Confidence 567899997 9999999997653 3689954322 2358999998853211 112468999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHhhcCcccceeccccCCCCCCCCCcccccccCCCceeEEeeCCCCceeE
Q 045288 129 VVSYSRLVSELEQMVKRMVFESYGVD-KYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKSFITVLHQNEVNGLEI 207 (236)
Q Consensus 129 ~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT~L~~~~~~GLqv 207 (236)
+++|++.|.+++..|+++++++||++ ++|.+.+....+.+|++||||++.++..+|+++|||+|+||||+||+++||||
T Consensus 78 ~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV 157 (262)
T PLN03001 78 VGEYGDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQDDVEGLQL 157 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEeCCCCceEE
Confidence 99999999999999999999999999 89988888777889999999999888899999999999999999999999999
Q ss_pred EcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 208 RTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 208 ~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
+ ++|+|++|+| .||++|||+||+||+
T Consensus 158 ~-~~g~Wi~V~p-~p~a~vVNiGD~l~~ 183 (262)
T PLN03001 158 L-KDAEWLMVPP-ISDAILIIIADQTEI 183 (262)
T ss_pred e-eCCeEEECCC-CCCcEEEEccHHHHH
Confidence 6 6899999999 999999999999986
No 27
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.93 E-value=8.3e-26 Score=167.31 Aligned_cols=108 Identities=28% Similarity=0.460 Sum_probs=88.9
Q ss_pred CceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCCCCcCccCC
Q 045288 9 LPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEKPYYGYLGN 88 (236)
Q Consensus 9 iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~GY~~~ 88 (236)
||||||+. +...|..++++|.+||+++|||||+||||+.++++++++++++||+||.|+|+++.+...++||.+.
T Consensus 1 iPvIDls~-----~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~~~~~~~Gy~~~ 75 (116)
T PF14226_consen 1 IPVIDLSP-----DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYARSPSYRGYSPP 75 (116)
T ss_dssp --EEEHGG-----CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHBCCTTCSEEEES
T ss_pred CCeEECCC-----CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhcCCCCCcccccC
Confidence 79999986 2456889999999999999999999999999999999999999999999999999777789999987
Q ss_pred CC----C-CCcceeeeeccCCCC--cc-cccCCCCCCCCCC
Q 045288 89 NP----L-VPAIYEGMGVDYANT--IE-GTQNFTNLIWPEG 121 (236)
Q Consensus 89 ~~----~-~~d~~E~~~~~~~~~--~~-~~~~~~~~~wP~~ 121 (236)
+. . ..|++|+|.++.... ++ ....+.+|+||++
T Consensus 76 ~~~~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~~n~WP~~ 116 (116)
T PF14226_consen 76 GSESTDGGKPDWKESFNIGPDLPEDDPAYPPLYGPNIWPDE 116 (116)
T ss_dssp EEECCTTCCCCSEEEEEEECC-STTCHHTGCTS-GGGS-TT
T ss_pred CccccCCCCCCceEEeEEECCCCccccccccccCCCCCCCC
Confidence 54 2 679999999997632 11 2345678999974
No 28
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.81 E-value=1.2e-19 Score=134.57 Aligned_cols=80 Identities=25% Similarity=0.353 Sum_probs=69.0
Q ss_pred CCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHHHHhhcCCCC-CCcCc
Q 045288 7 PKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIEIKEKNVSEK-PYYGY 85 (236)
Q Consensus 7 ~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~GY 85 (236)
..||||||+.+ .++++.+..++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.... ...||
T Consensus 36 ~~iPvIDls~~--~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~elid~~~~~~~~FF~LP~e~K~k~~~~~~~~~gy 113 (120)
T PLN03176 36 NEIPVISIAGI--DDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKLVSEMTTLAKEFFALPPEEKLRFDMSGGKKGGF 113 (120)
T ss_pred CCCCeEECccc--cCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHHhcccCCCccCCc
Confidence 47999999985 3344556778999999999999999999999999999999999999999999999997653 45688
Q ss_pred cCC
Q 045288 86 LGN 88 (236)
Q Consensus 86 ~~~ 88 (236)
...
T Consensus 114 ~~~ 116 (120)
T PLN03176 114 IVS 116 (120)
T ss_pred chh
Confidence 543
No 29
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.49 E-value=1.2e-14 Score=104.22 Aligned_cols=65 Identities=40% Similarity=0.721 Sum_probs=52.7
Q ss_pred cceeccccCCCCCCCCCcccccccCC--CceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 166 YLLRIMKYRCPETNEKNLGCDVHTDK--SFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 166 ~~lr~~~Yp~~~~~~~~~~~~~HtD~--~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
+.+|+++|++ ++...++++|+|. +++|+|+|++++||||++ .++|+.|++ .++.++||+|++|++
T Consensus 2 ~~~~~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~~~~~gL~~~~-~~~~~~v~~-~~~~~~v~~G~~l~~ 68 (98)
T PF03171_consen 2 SQLRLNRYPP---PENGVGIGPHTDDEDGLLTILFQDEVGGLQVRD-DGEWVDVPP-PPGGFIVNFGDALEI 68 (98)
T ss_dssp -EEEEEEE-S---CCGCEEEEEEEES--SSEEEEEETSTS-EEEEE-TTEEEE-----TTCEEEEEBHHHHH
T ss_pred CEEEEEECCC---cccCCceeCCCcCCCCeEEEEecccchheeccc-cccccCccC-ccceeeeeceeeeec
Confidence 5799999998 5678999999999 999999999999999965 458999999 999999999998875
No 30
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=86.68 E-value=0.68 Score=32.43 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=36.0
Q ss_pred eeccccCCCCCCCCCcccccccCC-----CceeEEee--CC-----CCceeEEc---CCCCeEecc-----CCCCCeEEE
Q 045288 168 LRIMKYRCPETNEKNLGCDVHTDK-----SFITVLHQ--NE-----VNGLEIRT---KDGCWIGFD-----DPTPSSFIV 227 (236)
Q Consensus 168 lr~~~Yp~~~~~~~~~~~~~HtD~-----~~lT~L~~--~~-----~~GLqv~~---~~g~W~~v~-----p~~~~~~iV 227 (236)
+++++|++. -.+.+|+|. ..+|+|+. +. .+.|++.. .++....+. | .+|.+++
T Consensus 1 ~~~~~y~~G------~~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p-~~g~~v~ 73 (100)
T PF13640_consen 1 MQLNRYPPG------GFFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVP-KPGRLVI 73 (100)
T ss_dssp -EEEEEETT------EEEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE--BTTEEEE
T ss_pred CEEEEECcC------CEEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccC-CCCEEEE
Confidence 466777542 357899999 58888854 23 36788864 345566666 8 9999988
Q ss_pred ecC
Q 045288 228 LAG 230 (236)
Q Consensus 228 n~G 230 (236)
--+
T Consensus 74 F~~ 76 (100)
T PF13640_consen 74 FPS 76 (100)
T ss_dssp EES
T ss_pred EeC
Confidence 766
No 31
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=84.53 E-value=6.7 Score=30.53 Aligned_cols=80 Identities=13% Similarity=0.075 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCChhhHHhhcCcccceeccccCCCCCCCCCcccccccCCC--------ceeEEee--C--CCCcee
Q 045288 139 LEQMVKRMVFESYGVDKYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDKS--------FITVLHQ--N--EVNGLE 206 (236)
Q Consensus 139 l~~~ll~~l~~~Lgl~~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~~--------~lT~L~~--~--~~~GLq 206 (236)
+...|.+.++..++++.. .......+++.+|.+. -...+|.|.. .+|+++. + ..+.|.
T Consensus 60 ~~~~l~~~i~~~~~~~~~----~~~~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~ 129 (178)
T smart00702 60 VIERIRQRLADFLGLLRG----LPLSAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELV 129 (178)
T ss_pred HHHHHHHHHHHHHCCCch----hhccCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEE
Confidence 445566666666766511 1123345888999763 2367899966 6888876 2 335577
Q ss_pred EEcCCC-CeEeccCCCCCeEEEec
Q 045288 207 IRTKDG-CWIGFDDPTPSSFIVLA 229 (236)
Q Consensus 207 v~~~~g-~W~~v~p~~~~~~iVn~ 229 (236)
+...+. ....|.| .+|.++|--
T Consensus 130 f~~~~~~~~~~v~P-~~G~~v~f~ 152 (178)
T smart00702 130 FPGLGLMVCATVKP-KKGDLLFFP 152 (178)
T ss_pred ecCCCCccceEEeC-CCCcEEEEe
Confidence 743221 2568889 999887754
No 32
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=76.29 E-value=17 Score=29.94 Aligned_cols=29 Identities=10% Similarity=0.084 Sum_probs=20.7
Q ss_pred CCceeEEcCCCCeEeccCCCCCeEEEecCcc
Q 045288 202 VNGLEIRTKDGCWIGFDDPTPSSFIVLAGDA 232 (236)
Q Consensus 202 ~~GLqv~~~~g~W~~v~p~~~~~~iVn~Gd~ 232 (236)
.+.|.+.+..|. ..|.| ..|.+||--...
T Consensus 129 GGEl~~~~~~g~-~~Vkp-~aG~~vlfps~~ 157 (226)
T PRK05467 129 GGELVIEDTYGE-HRVKL-PAGDLVLYPSTS 157 (226)
T ss_pred CCceEEecCCCc-EEEec-CCCeEEEECCCC
Confidence 567888766564 67888 899988865443
No 33
>PRK08130 putative aldolase; Validated
Probab=67.79 E-value=8.3 Score=31.26 Aligned_cols=37 Identities=5% Similarity=0.113 Sum_probs=28.5
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
.||++++... + ..++++++.+++++...+.+.|||+-
T Consensus 127 ~i~v~~y~~~----g---~~~la~~~~~~l~~~~~vll~nHGvi 163 (213)
T PRK08130 127 HVPLIPYYRP----G---DPAIAEALAGLAARYRAVLLANHGPV 163 (213)
T ss_pred ccceECCCCC----C---hHHHHHHHHHHhccCCEEEEcCCCCe
Confidence 4778777542 2 24678889999999999999999974
No 34
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=67.11 E-value=15 Score=29.78 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=40.1
Q ss_pred cccceeccccCCCCC-CCCCcccccccCCCceeEEeeCCCCceeEE-cCCCCeEeccCCCCCeEEEecCcc
Q 045288 164 STYLLRIMKYRCPET-NEKNLGCDVHTDKSFITVLHQNEVNGLEIR-TKDGCWIGFDDPTPSSFIVLAGDA 232 (236)
Q Consensus 164 ~~~~lr~~~Yp~~~~-~~~~~~~~~HtD~~~lT~L~~~~~~GLqv~-~~~g~W~~v~p~~~~~~iVn~Gd~ 232 (236)
....+|.+||.|... ++-...+..+ -.++.|+..+-..+. -+.|.-+.||| --|+.++|+||-
T Consensus 88 t~G~~~~~H~Hp~ade~E~y~vi~G~-----g~m~v~~~~G~~~v~~~~~Gd~iyVPp-~~gH~t~N~Gd~ 152 (209)
T COG2140 88 TPGAMRELHYHPNADEPEIYYVLKGE-----GRMLVQKPEGEARVIAVRAGDVIYVPP-GYGHYTINTGDE 152 (209)
T ss_pred cCCcccccccCCCCCcccEEEEEecc-----EEEEEEcCCCcEEEEEecCCcEEEeCC-CcceEeecCCCC
Confidence 345688999988543 3222223222 234445543444443 34689999999 999999999984
No 35
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=64.40 E-value=6.5 Score=35.32 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=36.0
Q ss_pred CCCCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhC
Q 045288 5 SVPKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFN 67 (236)
Q Consensus 5 ~~~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~ 67 (236)
.+.-||.|||+.+ .++ ...+.+.+.+++.|++.|.|. |+.+.+....+...+|.+
T Consensus 46 G~~~IP~i~f~di--~~~-----~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~ 100 (416)
T PF07350_consen 46 GSSIIPEIDFADI--ENG-----GVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLK 100 (416)
T ss_dssp T--SS-EEEHHHH--HCT--------HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHH
T ss_pred CCCCCceeeHHHH--hCC-----CCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence 4568999999985 322 235777888999999999864 777777766666666543
No 36
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=64.29 E-value=5.1 Score=24.99 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=19.8
Q ss_pred EEcCCCCeEeccCCCCCeEEEecCccccc
Q 045288 207 IRTKDGCWIGFDDPTPSSFIVLAGDAFLV 235 (236)
Q Consensus 207 v~~~~g~W~~v~p~~~~~~iVn~Gd~le~ 235 (236)
|.+.+|+++.|+- .++ +.+|+.+++
T Consensus 10 VlT~dGeF~~ik~-~~~---~~vG~eI~~ 34 (56)
T PF12791_consen 10 VLTPDGEFIKIKR-KPG---MEVGQEIEF 34 (56)
T ss_pred EEcCCCcEEEEeC-CCC---CcccCEEEE
Confidence 5578899999998 777 788887653
No 37
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=63.56 E-value=11 Score=29.70 Aligned_cols=37 Identities=19% Similarity=0.459 Sum_probs=28.5
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
.+|++++... ++ .+.++.+.+++++...+.|.|||+-
T Consensus 120 ~v~v~~~~~~----g~---~~la~~~~~~l~~~~~vll~nHGv~ 156 (184)
T PRK08333 120 KIPILPFRPA----GS---VELAEQVAEAMKEYDAVIMERHGIV 156 (184)
T ss_pred CEeeecCCCC----Cc---HHHHHHHHHHhccCCEEEEcCCCCE
Confidence 6888887652 22 4578888889988899999999974
No 38
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=58.62 E-value=13 Score=30.34 Aligned_cols=37 Identities=14% Similarity=0.102 Sum_probs=28.6
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
++|++++... + ..++++++.+++.+...+.|.|||+-
T Consensus 127 ~v~~~~y~~~----g---s~ela~~v~~~l~~~~~vlL~nHGv~ 163 (217)
T PRK05874 127 DVRCTEYAAS----G---TPEVGRNAVRALEGRAAALIANHGLV 163 (217)
T ss_pred ceeeecCCCC----C---cHHHHHHHHHHhCcCCEEEEcCCCCe
Confidence 4677776542 2 24688999999999999999999974
No 39
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=58.48 E-value=13 Score=32.78 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=35.7
Q ss_pred CCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhh
Q 045288 7 PKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEEL 65 (236)
Q Consensus 7 ~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 65 (236)
+++|.||++.+ +++ ...+.++.+++.++|++.+.+-+++.+. +.+.++.|
T Consensus 108 ~~~~~~d~~~~-~~~-----~~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~ 157 (366)
T TIGR02409 108 LSLPKFDHEAV-MKD-----DSVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRI 157 (366)
T ss_pred ccCCceeHHHH-hCC-----HHHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHh
Confidence 56788888774 322 2357889999999999999998886643 34444444
No 40
>PRK06755 hypothetical protein; Validated
Probab=58.47 E-value=12 Score=30.43 Aligned_cols=48 Identities=15% Similarity=0.023 Sum_probs=31.2
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCH--HHHHHHHHHH
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSL--ELHNAIFSAA 62 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~--~~~~~~~~~~ 62 (236)
+||+|++..- ++ ...++...+++++...+.|.|||+-. ..+++++..+
T Consensus 136 ~IPiv~~~~~----~~---~~la~~~~~~~~~~~avLl~~HGv~~~G~~l~eA~~~~ 185 (209)
T PRK06755 136 TIPIVEDEKK----FA---DLLENNVPNFIEGGGVVLVHNYGMIVWGKTPEEAKKWL 185 (209)
T ss_pred EEEEEeCCCc----hh---HHHHHHHHhhccCCCEEEEcCCCeEEEcCCHHHHHHHH
Confidence 5899988651 11 45566666777788899999999753 2344444433
No 41
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=49.20 E-value=24 Score=28.61 Aligned_cols=25 Identities=12% Similarity=0.053 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 27 LGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 27 ~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
.+.++.+.+++.+...+.+.|||+-
T Consensus 136 ~~la~~v~~~l~~~~~vll~nHGv~ 160 (214)
T PRK06833 136 KELAENAFEAMEDRRAVLLANHGLL 160 (214)
T ss_pred HHHHHHHHHHhCcCCEEEECCCCCE
Confidence 3567888888999999999999974
No 42
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=45.91 E-value=30 Score=29.31 Aligned_cols=37 Identities=11% Similarity=0.044 Sum_probs=27.5
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
.||++.+... ++ .+.++.+.+++++...+.+.|||+-
T Consensus 179 ~i~vvpy~~p----gs---~eLa~~v~~~l~~~~avLL~nHGvv 215 (274)
T PRK03634 179 GVGIVPWMVP----GT---DEIGQATAEKMQKHDLVLWPKHGVF 215 (274)
T ss_pred ceeEecCCCC----CC---HHHHHHHHHHhccCCEEEEcCCCCe
Confidence 4667766542 22 3578888899988899999999974
No 43
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=44.88 E-value=31 Score=27.07 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=26.6
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
+||++ +... ++ .+.++.+.+++.+.-.+.|.|||+-
T Consensus 115 ~ipv~-~~~~----~~---~~la~~v~~~l~~~~~vll~nHG~~ 150 (181)
T PRK08660 115 TIPVV-GGDI----GS---GELAENVARALSEHKGVVVRGHGTF 150 (181)
T ss_pred CEeEE-eCCC----CC---HHHHHHHHHHHhhCCEEEEcCCCce
Confidence 57887 3321 22 3578888899999999999999974
No 44
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=44.60 E-value=34 Score=27.70 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=27.6
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
.+|++.+... ++ .+.++++.+++.+.-.+.+.|||+-
T Consensus 122 ~v~~~~y~~~----gs---~~la~~~~~~l~~~~~vLl~nHGv~ 158 (215)
T PRK08087 122 SIPCAPYATF----GT---RELSEHVALALKNRKATLLQHHGLI 158 (215)
T ss_pred CceeecCCCC----CC---HHHHHHHHHHhCcCCEEEecCCCCE
Confidence 4777776542 22 3567888888888889999999974
No 45
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=43.91 E-value=14 Score=28.95 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=28.1
Q ss_pred CCCceeeCCCCCCCCCcccHHHHHHHHHHHHH-hccEEEEEcCCCC
Q 045288 7 PKLPVVNLSKENLKPGASSWLGTSRKVREALE-EFGCFVALYDEVS 51 (236)
Q Consensus 7 ~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~-~~Gff~l~nhgi~ 51 (236)
..+|+|++... +. ...++++.++++ +...+.+.|||+-
T Consensus 122 ~~v~~~~~~~~----~~---~~l~~~i~~~l~~~~~~vll~nHG~~ 160 (184)
T PF00596_consen 122 GEVPVVPYAPP----GS---EELAEAIAEALGEDRKAVLLRNHGVV 160 (184)
T ss_dssp SCEEEE-THST----TC---HHHHHHHHHHHTCTSSEEEETTTEEE
T ss_pred ccceeeccccc----cc---hhhhhhhhhhhcCCceEEeecCCceE
Confidence 56888888652 22 345788999998 8899999999963
No 46
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=43.62 E-value=21 Score=24.11 Aligned_cols=22 Identities=9% Similarity=-0.064 Sum_probs=18.2
Q ss_pred HHHHHHHHHhccEEEEEcCCCC
Q 045288 30 SRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 30 ~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
-+.|-+.|.+.||+||..|-+.
T Consensus 35 D~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 35 DEPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred ccHHHHHHHhcceEEEEeeeec
Confidence 3557889999999999887765
No 47
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=42.37 E-value=58 Score=26.59 Aligned_cols=56 Identities=14% Similarity=0.179 Sum_probs=34.8
Q ss_pred eeccccCCCCCCCCCcccccccCCC-------ceeEEeeCCCCc-eeEE--cCCCCeEeccCCCCCeEEEecCcc
Q 045288 168 LRIMKYRCPETNEKNLGCDVHTDKS-------FITVLHQNEVNG-LEIR--TKDGCWIGFDDPTPSSFIVLAGDA 232 (236)
Q Consensus 168 lr~~~Yp~~~~~~~~~~~~~HtD~~-------~lT~L~~~~~~G-Lqv~--~~~g~W~~v~p~~~~~~iVn~Gd~ 232 (236)
.-+|+|.+ ++ ++++|.|-. ++++=+ +.+. +.+. .+.+.+..+.- ..|.++|.-|+.
T Consensus 118 ~LvN~Y~~-----G~-~mg~H~D~~E~~~~~pI~SvSL--G~~~~F~~~~~~~~~~~~~l~L-~~Gdllvm~G~s 183 (213)
T PRK15401 118 CLINRYAP-----GA-KLSLHQDKDERDFRAPIVSVSL--GLPAVFQFGGLKRSDPLQRILL-EHGDVVVWGGPS 183 (213)
T ss_pred EEEEeccC-----cC-ccccccCCCcccCCCCEEEEeC--CCCeEEEecccCCCCceEEEEe-CCCCEEEECchH
Confidence 45788975 23 789999942 111111 2222 2232 23456899999 999999998874
No 48
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=42.31 E-value=35 Score=28.87 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=27.0
Q ss_pred CceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 9 LPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 9 iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
||++.+.. .++ .++++.+.+++++...+.|.|||+-
T Consensus 178 i~vvp~~~----pGs---~eLA~~v~~~l~~~~avLL~nHGvv 213 (270)
T TIGR02624 178 VGIIPWMV----PGT---NEIGEATAEKMKEHRLVLWPHHGIF 213 (270)
T ss_pred cccccCcC----CCC---HHHHHHHHHHhccCCEEEEcCCCCe
Confidence 66665543 122 4678889999999999999999974
No 49
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=41.06 E-value=30 Score=21.91 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=26.5
Q ss_pred CCcccccccCCCcee---EE-------eeCCCCceeEEcCCCCeEeccC
Q 045288 181 KNLGCDVHTDKSFIT---VL-------HQNEVNGLEIRTKDGCWIGFDD 219 (236)
Q Consensus 181 ~~~~~~~HtD~~~lT---~L-------~~~~~~GLqv~~~~g~W~~v~p 219 (236)
+.-|.-+-+|-.++| +| +|--..-|||+--||.|.+|.-
T Consensus 14 nsnG~~P~tdg~liT~ltfL~pkd~~~vq~~f~~LQv~fgDGpWqdikg 62 (64)
T PF06820_consen 14 NSNGWFPETDGRLITGLTFLDPKDATRVQGVFRHLQVRFGDGPWQDIKG 62 (64)
T ss_pred cCCccccCCCcceEeeeEEecccCchhheeeeeeeEEEeccCChhhccC
Confidence 455677778865554 44 1222468999988999998864
No 50
>TIGR02410 carnitine_TMLD trimethyllysine dioxygenase. Members of this family with known function act as trimethyllysine dioxygenase, an enzyme in the pathway for carnitine biosynthesis from lysine. This enzyme is homologous to gamma-butyrobetaine,2-oxoglutarate dioxygenase, which catalyzes the last step in carnitine biosynthesis. Members of this family appear to be eukaryotic only.
Probab=41.05 E-value=38 Score=29.89 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=34.4
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhh
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEEL 65 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~f 65 (236)
.+|.+|+..+ +.++ ...+.++.+++.++|+..+.|-+++.+... +.+++|
T Consensus 100 ~~~~~~~~~~-~~~~----d~~l~~~l~~l~~~G~v~~~g~~~~~~~~~---~~a~ri 149 (362)
T TIGR02410 100 KDPSVHFKTT-YDHT----DSTLKSFSKNIYKYGFTFVDNVPVTPEATE---KLCERI 149 (362)
T ss_pred cCCceeHHHH-hccC----HHHHHHHHHHHHhhCEEEEcCCCCCHHHHH---HHHHHh
Confidence 3577777664 3321 245888999999999999999888765443 444444
No 51
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=40.95 E-value=1.4e+02 Score=25.88 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCC-hhhHHhhcCcccceeccccCCCCCCCCCcccccccCC------------CceeEEee
Q 045288 139 LEQMVKRMVFESYGVD-KYYDSVLESSTYLLRIMKYRCPETNEKNLGCDVHTDK------------SFITVLHQ 199 (236)
Q Consensus 139 l~~~ll~~l~~~Lgl~-~~~~~~~~~~~~~lr~~~Yp~~~~~~~~~~~~~HtD~------------~~lT~L~~ 199 (236)
+...|.+.++...+++ +. .-.|++.+|-+.+. ..+|.|+ .+.|+|+.
T Consensus 112 vv~~I~~Ria~~t~lp~~~--------~E~lQVlrY~~Gq~------Y~~H~D~~~~~~~~~~gg~R~aTvL~Y 171 (310)
T PLN00052 112 VVSRIEERIAAWTFLPEEN--------AENIQILRYEHGQK------YEPHFDYFHDKINQALGGHRYATVLMY 171 (310)
T ss_pred HHHHHHHHHHHHhCCCccc--------CcceEEEecCCCCC------CCCCCCccccccccccCCceeEEEEEE
Confidence 3444445555556666 32 12377888876432 4667774 26788865
No 52
>PRK05834 hypothetical protein; Provisional
Probab=40.19 E-value=44 Score=26.69 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcc--EEEEEcCCCC
Q 045288 28 GTSRKVREALEEFG--CFVALYDEVS 51 (236)
Q Consensus 28 ~~~~~l~~A~~~~G--ff~l~nhgi~ 51 (236)
..++.+.+++++.. .+.|.|||+-
T Consensus 136 ~la~~v~~~l~~~~~~avLL~nHGvv 161 (194)
T PRK05834 136 RADTEILRYLQEKNKNFVVIKGYGVY 161 (194)
T ss_pred hHHHHHHHHHhhcCCCEEEEcCCcce
Confidence 34677888888755 9999999974
No 53
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=39.42 E-value=38 Score=27.41 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=25.9
Q ss_pred CceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 9 LPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 9 iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
||++.+... + -.++++.+.+++.+...+.|.|||+-
T Consensus 122 i~~v~y~~~----g---s~~la~~v~~~~~~~~~vLL~nHG~~ 157 (214)
T TIGR01086 122 IPCVPYATF----G---STKLASEVVAGILKSKAILLLHHGLI 157 (214)
T ss_pred ccccCCCCC----C---hHHHHHHHHHHhhhCCEEehhcCCCE
Confidence 566655542 1 13567888888888899999999974
No 54
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=38.79 E-value=83 Score=22.34 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=36.2
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCCHH
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLPIE 71 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp~e 71 (236)
.+--||++.+ +.-++.--...-.+.+-|+..|. -+.-+|+|+.+.. -.+.|+++..
T Consensus 40 ~~~~idLs~v--~rvDSaglALL~~~~~~~k~~g~-~~~L~~~p~~L~t-----La~Ly~l~~~ 95 (99)
T COG3113 40 DTVRIDLSGV--SRVDSAGLALLLHLIRLAKKQGN-AVTLTGVPEQLRT-----LAELYNLSDW 95 (99)
T ss_pred CeEEEehhhc--ceechHHHHHHHHHHHHHHHcCC-eeEEecCcHHHHH-----HHHHhCcHhh
Confidence 4556888875 22233335567778888998888 7777889876443 3345666554
No 55
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=37.45 E-value=36 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=26.6
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHH--HhccEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREAL--EEFGCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~--~~~Gff~l~nhgi~ 51 (236)
.||++.+... + ..+.++++.+++ .+...+.|.|||+-
T Consensus 130 ~ip~~~y~~~----g---~~ela~~i~~~l~~~~~~~vll~nHG~~ 168 (221)
T PRK06557 130 PIPVGPFALI----G---DEAIGKGIVETLKGGRSPAVLMQNHGVF 168 (221)
T ss_pred CeeccCCcCC----C---cHHHHHHHHHHhCcCCCCEEEECCCCce
Confidence 5677666542 1 235678888888 77889999999974
No 56
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=36.98 E-value=56 Score=25.96 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=22.7
Q ss_pred eeEEeeCCCCc-----e-eEEcCCCCeEeccCCCCCeEEEecCcc
Q 045288 194 ITVLHQNEVNG-----L-EIRTKDGCWIGFDDPTPSSFIVLAGDA 232 (236)
Q Consensus 194 lT~L~~~~~~G-----L-qv~~~~g~W~~v~p~~~~~~iVn~Gd~ 232 (236)
=.+|+|+. .| . -|....|+-+.||| -=++.+||+||.
T Consensus 94 g~~lLq~~-~~~~~~~~~~v~~~~G~~v~IPp-~yaH~tIN~g~~ 136 (182)
T PF06560_consen 94 GLILLQKE-EGDDVGDVIAVEAKPGDVVYIPP-GYAHRTINTGDE 136 (182)
T ss_dssp EEEEEE-T-TS-----EEEEEE-TTEEEEE-T-T-EEEEEE-SSS
T ss_pred EEEEEEec-CCCcceeEEEEEeCCCCEEEECC-CceEEEEECCCC
Confidence 35667764 44 1 23345788999999 999999999984
No 57
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=35.80 E-value=42 Score=26.21 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=33.6
Q ss_pred cceeccccCCCCCCCCCcccccccCCCce-------eEEeeCCCCceeEEcC--CCCeEeccCCCCCeEEEecCcc
Q 045288 166 YLLRIMKYRCPETNEKNLGCDVHTDKSFI-------TVLHQNEVNGLEIRTK--DGCWIGFDDPTPSSFIVLAGDA 232 (236)
Q Consensus 166 ~~lr~~~Yp~~~~~~~~~~~~~HtD~~~l-------T~L~~~~~~GLqv~~~--~g~W~~v~p~~~~~~iVn~Gd~ 232 (236)
...-+|+|.+ +. ++++|.|...+ |+=+. ...-+.++.. .+..+.+.- .+|+++|+-|++
T Consensus 97 n~~liN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG-~~~~~~f~~~~~~~~~~~~~L-~~gsl~vm~g~~ 164 (194)
T PF13532_consen 97 NQCLINYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLG-SSRVFRFRNKSDDDEPIEVPL-PPGSLLVMSGEA 164 (194)
T ss_dssp SEEEEEEESS-----TT--EEEE---TTC-CCSEEEEEEEE-S-EEEEEEECGGTS-EEEEEE--TTEEEEEETTH
T ss_pred CEEEEEecCC-----CC-CcCCCCCcccccCCCcEEEEEEc-cCceEEEeeccCCCccEEEEc-CCCCEEEeChHH
Confidence 3456789976 34 89999998733 22221 1223444432 467999999 899999999875
No 58
>PRK06357 hypothetical protein; Provisional
Probab=35.71 E-value=67 Score=26.11 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=25.1
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhc------cEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEF------GCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~------Gff~l~nhgi~ 51 (236)
.+|++.+... ++ .+.++.+.+++++. ..+.+.|||+-
T Consensus 130 ~i~~~p~~~~----gs---~ela~~v~~~l~~~~~~~~~~~vLl~nHGvv 172 (216)
T PRK06357 130 KIPTLPFAPA----TS---PELAEIVRKHLIELGDKAVPSAFLLNSHGIV 172 (216)
T ss_pred CcceecccCC----Cc---HHHHHHHHHHHhhcCcccCCCEEEECCCCCe
Confidence 4677766542 22 46677777777764 58999999974
No 59
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=35.05 E-value=49 Score=20.17 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCCC
Q 045288 29 TSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNLP 69 (236)
Q Consensus 29 ~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~lp 69 (236)
.+..|.+.+...|+....-.|+-.....+++..-+..+.|+
T Consensus 4 ~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 4 DVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 47788889999998855556777777777777777777775
No 60
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=34.41 E-value=1.5e+02 Score=22.21 Aligned_cols=38 Identities=8% Similarity=0.108 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhccEEEEEc-CCCCHHHHHHHHHHHH
Q 045288 26 WLGTSRKVREALEEFGCFVALY-DEVSLELHNAIFSAAE 63 (236)
Q Consensus 26 ~~~~~~~l~~A~~~~Gff~l~n-hgi~~~~~~~~~~~~~ 63 (236)
+...++++.+.++++.++++.+ +|++...+.++....+
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~ 41 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELR 41 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 4567899999999998888876 5888877766666544
No 61
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=33.69 E-value=44 Score=26.10 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=27.2
Q ss_pred ccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEe
Q 045288 188 HTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVL 228 (236)
Q Consensus 188 HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn 228 (236)
|.|-- |.+.. .+.+=+-|++++++|+.|.. .+|-+||.
T Consensus 91 h~dee-iR~il-~GtgYfDVrd~dd~WIRi~v-ekGDlivl 128 (179)
T KOG2107|consen 91 HEDEE-IRYIL-EGTGYFDVRDKDDQWIRIFV-EKGDLIVL 128 (179)
T ss_pred Cchhh-eEEEe-ecceEEeeccCCCCEEEEEE-ecCCEEEe
Confidence 55544 33333 35566779999999999999 88877764
No 62
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=32.62 E-value=75 Score=25.22 Aligned_cols=25 Identities=12% Similarity=-0.015 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHH---hccEEEEEcCCCC
Q 045288 27 LGTSRKVREALE---EFGCFVALYDEVS 51 (236)
Q Consensus 27 ~~~~~~l~~A~~---~~Gff~l~nhgi~ 51 (236)
.+.++.+.++++ +...+.|.|||+-
T Consensus 137 ~ela~~~~~~l~~~~~~~avll~nHGv~ 164 (193)
T TIGR03328 137 ARLADSVAPYLEAYPDVPGVLIRGHGLY 164 (193)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCCcce
Confidence 457888888886 4789999999974
No 63
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=32.35 E-value=22 Score=18.99 Aligned_cols=18 Identities=11% Similarity=-0.164 Sum_probs=12.9
Q ss_pred EEEEcCCCCHHHHHHHHH
Q 045288 43 FVALYDEVSLELHNAIFS 60 (236)
Q Consensus 43 f~l~nhgi~~~~~~~~~~ 60 (236)
.||..||++.+.+.+-+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 477889999877765443
No 64
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=32.16 E-value=39 Score=27.14 Aligned_cols=40 Identities=3% Similarity=-0.080 Sum_probs=27.6
Q ss_pred CCCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 7 PKLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 7 ~~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
..||++++... .. ...+.++.+.+++.+.-.+.+.|||+-
T Consensus 121 ~~ip~~~~~~~--~~---~~~~la~~~~~~l~~~~~vll~nHG~~ 160 (209)
T cd00398 121 GDIPCTPYMTP--ET---GEDEIGTQRALGFPNSKAVLLRNHGLF 160 (209)
T ss_pred CCeeecCCcCC--Cc---cHHHHHHHHhcCCCcCCEEEEcCCCCe
Confidence 36888887652 11 123456677777778889999999974
No 65
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=31.83 E-value=94 Score=24.29 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=35.9
Q ss_pred ceeccccCCCCCCCCCcccccccCCCcee----EE-eeCCCCc-eeEEc--CCCCeEeccCCCCCeEEEecCcc
Q 045288 167 LLRIMKYRCPETNEKNLGCDVHTDKSFIT----VL-HQNEVNG-LEIRT--KDGCWIGFDDPTPSSFIVLAGDA 232 (236)
Q Consensus 167 ~lr~~~Yp~~~~~~~~~~~~~HtD~~~lT----~L-~~~~~~G-Lqv~~--~~g~W~~v~p~~~~~~iVn~Gd~ 232 (236)
..-+|+|++. -++++|.|-.-+. |. +.=+.+. +.+.. +++....+.- .+|.++|+-|+.
T Consensus 96 ~~LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L-~sGsllvM~G~s 162 (169)
T TIGR00568 96 ACLVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRL-HSGDVVIMGGES 162 (169)
T ss_pred EEEEEeecCC------CccccccccccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEEe-CCCCEEEECCch
Confidence 3557999763 4689999963221 11 1111222 22221 3456889999 999999999874
No 66
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=31.59 E-value=69 Score=27.36 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=23.5
Q ss_pred HHHHHHhccEEEEEcCCCCHHHHHHHHHHHH
Q 045288 33 VREALEEFGCFVALYDEVSLELHNAIFSAAE 63 (236)
Q Consensus 33 l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~ 63 (236)
..+++++.|||.|.| +|..++.++.+...
T Consensus 17 Al~~lED~Gy~cvDN--lP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 17 ALRALEDLGYYCVDN--LPPSLLPQLIELLA 45 (284)
T ss_pred HHHHHHhcCeeEEcC--CcHHHHHHHHHHHH
Confidence 447889999999998 88888887776554
No 67
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins. The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.
Probab=31.08 E-value=83 Score=22.34 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=30.8
Q ss_pred ccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEEEec
Q 045288 186 DVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFIVLA 229 (236)
Q Consensus 186 ~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~iVn~ 229 (236)
..+++..++||.+.++.....++..+|+...+.. .|.++.+.
T Consensus 19 ~~~~~~e~f~le~~~~~~~v~lrs~~GkYls~~~--~G~v~~~~ 60 (111)
T PF06268_consen 19 ASLSDWETFQLEFDDGSYKVALRSHNGKYLSVDS--DGSVVADS 60 (111)
T ss_dssp SSSSCGGSEEEEEETTEEEEEEECTTSEEEEEET--TSEEEEEE
T ss_pred hcCcccEEEEEEEECCCCEEEEEcCCCCEEEEcC--CCeEEecC
Confidence 3467788999998777566677788888888866 66655543
No 68
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=29.99 E-value=1.2e+02 Score=25.62 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCC
Q 045288 28 GTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNL 68 (236)
Q Consensus 28 ~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 68 (236)
+..++|.+++.++|++.+.|..++. +...+.++.|-.+
T Consensus 28 ~~~~~l~~~l~~~Gvlvfr~q~l~~---~~~~~~~~~~G~~ 65 (277)
T PRK09553 28 NQFEQLYHALLRHQVLFFRDQPITP---QQQRDLAARFGDL 65 (277)
T ss_pred HHHHHHHHHHHHCCEEEECCCCCCH---HHHHHHHHHhCCC
Confidence 4678899999999999999988875 4455566666543
No 69
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=29.65 E-value=1.1e+02 Score=22.72 Aligned_cols=36 Identities=11% Similarity=0.107 Sum_probs=28.0
Q ss_pred CcccHHHHHHHHHHHHHhc-cEEEEEcCCCCHHHHHH
Q 045288 22 GASSWLGTSRKVREALEEF-GCFVALYDEVSLELHNA 57 (236)
Q Consensus 22 ~~~~~~~~~~~l~~A~~~~-Gff~l~nhgi~~~~~~~ 57 (236)
+.+.|...++.|.+++... |.+.+=|.+.....+++
T Consensus 53 ~~DPr~~~~~~L~~~i~~~~g~ivvyN~sfE~~rL~e 89 (130)
T PF11074_consen 53 GEDPRRELIEALIKAIGSIYGSIVVYNKSFEKTRLKE 89 (130)
T ss_pred CCCchHHHHHHHHHHhhhhcCeEEEechHHHHHHHHH
Confidence 3466889999999999999 99999887665543333
No 70
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=27.15 E-value=1.8e+02 Score=22.37 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhccEEEEEc-CCCCHHHHHHHHHHHH
Q 045288 26 WLGTSRKVREALEEFGCFVALY-DEVSLELHNAIFSAAE 63 (236)
Q Consensus 26 ~~~~~~~l~~A~~~~Gff~l~n-hgi~~~~~~~~~~~~~ 63 (236)
+...+++|.+.+.++-.++|++ +|++...++++.+..+
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr 41 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWK 41 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhc
Confidence 4568899999999988777764 7899887777776554
No 71
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=26.96 E-value=1.4e+02 Score=23.36 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=34.4
Q ss_pred cccccccCC----CceeEEeeC----CCCceeEEcC-----CCCeEeccCCCCCeEEEecCccc
Q 045288 183 LGCDVHTDK----SFITVLHQN----EVNGLEIRTK-----DGCWIGFDDPTPSSFIVLAGDAF 233 (236)
Q Consensus 183 ~~~~~HtD~----~~lT~L~~~----~~~GLqv~~~-----~g~W~~v~p~~~~~~iVn~Gd~l 233 (236)
.....|.|. ..+|++..- ..+|+.+... -| +.|.+ .+|++++-.|-.+
T Consensus 85 r~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g--~~~~~-~~GtVl~~~~~~~ 145 (171)
T PF12851_consen 85 RCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILG--VAFAY-QPGTVLIFCAKRE 145 (171)
T ss_pred cCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCC--EEEec-CCCcEEEEcccce
Confidence 446789998 677777652 3467776443 34 78888 9999999988754
No 72
>PRK08193 araD L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=26.91 E-value=1.1e+02 Score=25.03 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=25.5
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhc-------cEEEEEcCCCC
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEF-------GCFVALYDEVS 51 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~-------Gff~l~nhgi~ 51 (236)
.||++++..- .+-..+...+.++.+.+++++. ..+.+.|||+-
T Consensus 124 ~ip~~~~~~~-~~~~~~~~~~~~~~ia~~l~~~~~~~~~~~avLl~nHG~v 173 (231)
T PRK08193 124 DIPCTRKMTD-EEINGEYEWETGKVIVETFEKRGIDPAAVPGVLVHSHGPF 173 (231)
T ss_pred CcceecCCCc-ccccccchhhHHHHHHHHHhhccCCcccCCEEEEcCCCce
Confidence 5777765431 0000011235677888888754 57899999974
No 73
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=24.89 E-value=2.5e+02 Score=21.22 Aligned_cols=38 Identities=11% Similarity=0.043 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhccEEEEEc-CCCCHHHHHHHHHHHH
Q 045288 26 WLGTSRKVREALEEFGCFVALY-DEVSLELHNAIFSAAE 63 (236)
Q Consensus 26 ~~~~~~~l~~A~~~~Gff~l~n-hgi~~~~~~~~~~~~~ 63 (236)
+...++++.+.++++-++++.+ +|++...+.++....+
T Consensus 5 K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr 43 (157)
T cd05797 5 KEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELR 43 (157)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHH
Confidence 4567888888888888777765 5888777776666555
No 74
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=24.63 E-value=2.3e+02 Score=22.08 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhccEEEEEc-CCCCHHHHHHHHHHHHh
Q 045288 26 WLGTSRKVREALEEFGCFVALY-DEVSLELHNAIFSAAEE 64 (236)
Q Consensus 26 ~~~~~~~l~~A~~~~Gff~l~n-hgi~~~~~~~~~~~~~~ 64 (236)
+...+++|.+.+.++-.++|++ .|++...+.++.+..+.
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 4567889999999998888775 68888777777666553
No 75
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=24.33 E-value=2.2e+02 Score=23.91 Aligned_cols=42 Identities=12% Similarity=0.097 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhccE--EEEE-cCCCCHHHHHHHHHHHHhhhC
Q 045288 26 WLGTSRKVREALEEFGC--FVAL-YDEVSLELHNAIFSAAEELFN 67 (236)
Q Consensus 26 ~~~~~~~l~~A~~~~Gf--f~l~-nhgi~~~~~~~~~~~~~~fF~ 67 (236)
-......+.+++..+|| |+++ +||=....+..+.+..+..|.
T Consensus 88 ~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 88 LIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 34577888999999998 5555 488777666666665555444
No 76
>PRK15331 chaperone protein SicA; Provisional
Probab=23.30 E-value=87 Score=24.47 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhccEEEEEcCCCCHHHHHHHHHHHHhhhCC
Q 045288 26 WLGTSRKVREALEEFGCFVALYDEVSLELHNAIFSAAEELFNL 68 (236)
Q Consensus 26 ~~~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~~~~~~~~fF~l 68 (236)
..+.++.|.+++.+-+-.. .-|||+.+.++.++..+..||..
T Consensus 9 ~~~~~~~i~~al~~G~tlk-~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 9 EERVAEMIWDAVSEGATLK-DVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred HHHHHHHHHHHHHCCCCHH-HHhCCCHHHHHHHHHHHHHHHHC
Confidence 4567888989888754333 24899999999999999999963
No 77
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=23.21 E-value=1.2e+02 Score=21.80 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=17.1
Q ss_pred CCCcccccccCCCceeEEee
Q 045288 180 EKNLGCDVHTDKSFITVLHQ 199 (236)
Q Consensus 180 ~~~~~~~~HtD~~~lT~L~~ 199 (236)
...++.-+|.+..++|.+++
T Consensus 39 ~~gf~~HPH~g~eivTyv~~ 58 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLE 58 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEE
T ss_pred CCCCCCcCCCCceEEEEEec
Confidence 35678899999999999986
No 78
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=23.16 E-value=1.7e+02 Score=20.00 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHH
Q 045288 126 CKTVVSYSRLVSELEQMVKRMVFESYGVD-KYYDS 159 (236)
Q Consensus 126 ~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~ 159 (236)
...+.+ |.++++++..|+..||..-|++ ..+-+
T Consensus 42 I~lLhe-YNeiKD~gQ~Lig~iA~~rgvt~~~v~~ 75 (83)
T PF07061_consen 42 IKLLHE-YNEIKDIGQGLIGLIADQRGVTVKDVYE 75 (83)
T ss_pred HHHHHH-HhHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 333444 4678999999999999999999 55433
No 79
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=23.10 E-value=92 Score=25.06 Aligned_cols=25 Identities=4% Similarity=0.150 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHH-hccEEEEEcCCCC
Q 045288 27 LGTSRKVREALE-EFGCFVALYDEVS 51 (236)
Q Consensus 27 ~~~~~~l~~A~~-~~Gff~l~nhgi~ 51 (236)
.++++.+.++++ +...+.+.|||+-
T Consensus 148 ~eLa~~v~~~l~~~~~avLl~nHG~v 173 (208)
T PRK06754 148 PTLAEEFAKHIQGDSGAVLIRNHGIT 173 (208)
T ss_pred HHHHHHHHHHhccCCcEEEECCCceE
Confidence 468889999997 8889999999974
No 80
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=22.60 E-value=1.9e+02 Score=23.34 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhccEEEEEcCCCCHHHHHH
Q 045288 28 GTSRKVREALEEFGCFVALYDEVSLELHNA 57 (236)
Q Consensus 28 ~~~~~l~~A~~~~Gff~l~nhgi~~~~~~~ 57 (236)
...+++.+++.+.|++.|.+-.++.+...+
T Consensus 24 ~~~~~~~~~l~~~G~vvlrg~~~~~~~~~~ 53 (258)
T PF02668_consen 24 EELEELREALAEYGFVVLRGFPLDPEQFEA 53 (258)
T ss_dssp CHHHHHHHHHHHHSEEEEESCTSSHHHHHH
T ss_pred HHHHHHHHHHhcccEEEEcCCCCCHHHHHH
Confidence 478899999999999999988875544443
No 81
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=22.13 E-value=78 Score=18.90 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhccE
Q 045288 26 WLGTSRKVREALEEFGC 42 (236)
Q Consensus 26 ~~~~~~~l~~A~~~~Gf 42 (236)
.+++.++|.+++++.||
T Consensus 27 s~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 27 SEETRERILEAAEELGY 43 (46)
T ss_dssp THHHHHHHHHHHHHHTB
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 45666777777777765
No 82
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=21.90 E-value=30 Score=31.93 Aligned_cols=41 Identities=27% Similarity=0.450 Sum_probs=30.5
Q ss_pred CcccccccCCCceeEEeeCCCCceeEEcCCCCeEeccCCCCCeEE
Q 045288 182 NLGCDVHTDKSFITVLHQNEVNGLEIRTKDGCWIGFDDPTPSSFI 226 (236)
Q Consensus 182 ~~~~~~HtD~~~lT~L~~~~~~GLqv~~~~g~W~~v~p~~~~~~i 226 (236)
.+....|.|...++--.+....||+|+ |.-|+.|.. |++||
T Consensus 384 ~~~~~~~~d~~~vvraMa~pdSGLeir--dRmWlKItI--Pnafi 424 (626)
T KOG3571|consen 384 KIELLTEMDMIIVVRAMARPDSGLEIR--DRMWLKITI--PNAFI 424 (626)
T ss_pred cchhcccccHHHHHHhhcCCCCcceec--cceeeeeec--chhhc
Confidence 345567778777766677778999995 567999987 77664
No 83
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=21.79 E-value=1.3e+02 Score=20.47 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhhCCCHHHHhhc
Q 045288 53 ELHNAIFSAAEELFNLPIEIKEKN 76 (236)
Q Consensus 53 ~~~~~~~~~~~~fF~lp~e~K~~~ 76 (236)
+.+++....-..|.+||.|.|+.-
T Consensus 21 EVL~~~k~N~D~~~aL~~ETKaEr 44 (97)
T PF11043_consen 21 EVLDNIKNNYDAFMALPPETKAER 44 (97)
T ss_pred HHHHHHHHHHHHHHcCChhhHHHH
Confidence 455666677778889999988763
No 84
>PRK06661 hypothetical protein; Provisional
Probab=21.48 E-value=1.1e+02 Score=25.19 Aligned_cols=25 Identities=8% Similarity=-0.047 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhccEEEEEcCCCC
Q 045288 27 LGTSRKVREALEEFGCFVALYDEVS 51 (236)
Q Consensus 27 ~~~~~~l~~A~~~~Gff~l~nhgi~ 51 (236)
.+.++++.+++.+...+.|.|||+-
T Consensus 137 ~~~~~~~a~~l~~~~avll~nHG~v 161 (231)
T PRK06661 137 DKQSSRLVNDLKQNYVMLLRNHGAI 161 (231)
T ss_pred hhHHHHHHHHhCCCCEEEECCCCCe
Confidence 3467888899999999999999974
No 85
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=21.04 E-value=1.1e+02 Score=24.58 Aligned_cols=25 Identities=8% Similarity=-0.001 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcc---EEEEEcCCCC
Q 045288 27 LGTSRKVREALEEFG---CFVALYDEVS 51 (236)
Q Consensus 27 ~~~~~~l~~A~~~~G---ff~l~nhgi~ 51 (236)
.++++.+.+++++.. .+.|.|||+-
T Consensus 145 ~eLa~~v~~~l~~~~~~~avlL~nHGvi 172 (204)
T PRK09220 145 ARLAARVAPYLDAQPLRYGYLIRGHGLY 172 (204)
T ss_pred HHHHHHHHHHHHhCCCCcEEEECCCceE
Confidence 568889999998864 8999999974
No 86
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=20.86 E-value=3.1e+02 Score=19.87 Aligned_cols=36 Identities=17% Similarity=0.106 Sum_probs=27.2
Q ss_pred HHHHHHHHHh---ccEEEEEcCCCCHHHHHHHHHHHHhh
Q 045288 30 SRKVREALEE---FGCFVALYDEVSLELHNAIFSAAEEL 65 (236)
Q Consensus 30 ~~~l~~A~~~---~Gff~l~nhgi~~~~~~~~~~~~~~f 65 (236)
.++|..||.. ...+-|.+.|....+++++.+..+++
T Consensus 78 k~eLG~a~Gk~~~~svvaI~d~g~a~~~~~~~~~~i~~~ 116 (117)
T TIGR03677 78 KEDLGAAAGLEVGAASAAIVDEGKAEELLKEIIEKVEAL 116 (117)
T ss_pred HHHHHHHhCCCCCeEEEEEEchhhhHHHHHHHHHHHHhc
Confidence 4668888853 66788889999888888887766653
No 87
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=20.78 E-value=3.6e+02 Score=20.82 Aligned_cols=39 Identities=10% Similarity=0.012 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhccEEEEEc-CCCCHHHHHHHHHHHHh
Q 045288 26 WLGTSRKVREALEEFGCFVALY-DEVSLELHNAIFSAAEE 64 (236)
Q Consensus 26 ~~~~~~~l~~A~~~~Gff~l~n-hgi~~~~~~~~~~~~~~ 64 (236)
+...+++|.+.++++-.+++.+ .|++...+.++....+.
T Consensus 6 K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 6 KKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 4567778888888777666665 47777666666655443
No 88
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=20.73 E-value=1.4e+02 Score=22.11 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=25.9
Q ss_pred CCceeeCCCCCCCCCcccHHHHHHHHHHHHHhccEEEE
Q 045288 8 KLPVVNLSKENLKPGASSWLGTSRKVREALEEFGCFVA 45 (236)
Q Consensus 8 ~iPvIDl~~l~~~~~~~~~~~~~~~l~~A~~~~Gff~l 45 (236)
+|-+.|++.+ ..++......+++++.-.+++|-+.+
T Consensus 65 NIvIaDit~l--~~d~~~~~~V~e~lr~~a~~~ggdi~ 100 (124)
T COG2450 65 NIVIADITPL--ERDDDLFERVIEELRDTAEEVGGDIA 100 (124)
T ss_pred CEEEEEcCCc--ccChhHHHHHHHHHHHHHHHhCchhh
Confidence 6778899885 44555567788888888888775443
No 89
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=20.18 E-value=60 Score=19.96 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=20.2
Q ss_pred CceeEEcCCCCeEeccCCCCCeEEEec
Q 045288 203 NGLEIRTKDGCWIGFDDPTPSSFIVLA 229 (236)
Q Consensus 203 ~GLqv~~~~g~W~~v~p~~~~~~iVn~ 229 (236)
.||+++ .|=..+|.| ..+-++||+
T Consensus 19 ~Gle~~--rG~~qSvRp-~~~~l~lNv 42 (52)
T PF08699_consen 19 GGLEAW--RGFFQSVRP-TQGGLLLNV 42 (52)
T ss_dssp TTEEEE--EEEEEEEEE-ETTEEEEEE
T ss_pred CcEEEe--EeEEeeeEE-cCCCCEEEE
Confidence 589986 577889999 888899987
Done!