BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045289
         (71 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
 pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
          Length = 92

 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 28/38 (73%)

Query: 12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          ++E+DR+LPIAN++ I+K A P N  I K AK+ +Q C
Sbjct: 1  MKEQDRWLPIANVARIMKLALPENAKIAKEAKECMQEC 38


>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
          Length = 93

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          + +E+D YLPIAN++ I+K A P    I K+AK+ VQ C
Sbjct: 1  SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQEC 39


>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
          Functionally A Sequence Specific Histone
          Length = 94

 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49
          + +E+D YLPIAN++ I+K A P    I K+AK+ VQ C
Sbjct: 2  SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQEC 40


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.377 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,918,738
Number of Sequences: 62578
Number of extensions: 55010
Number of successful extensions: 93
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 4
length of query: 71
length of database: 14,973,337
effective HSP length: 41
effective length of query: 30
effective length of database: 12,407,639
effective search space: 372229170
effective search space used: 372229170
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)