Query 045289
Match_columns 71
No_of_seqs 109 out of 213
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 20:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jfi_B DR1 protein, transcript 99.6 7.8E-16 2.7E-20 109.0 5.3 45 11-56 8-52 (179)
2 1n1j_A NF-YB; histone-like PAI 99.5 1.2E-14 4.1E-19 91.3 5.0 45 12-56 2-46 (93)
3 2byk_B Chrac-14; nucleosome sl 99.5 1.4E-14 4.9E-19 96.8 4.0 44 13-56 4-47 (128)
4 3b0c_W CENP-W, centromere prot 99.5 3.9E-14 1.3E-18 86.7 4.3 40 16-56 2-41 (76)
5 1f1e_A Histone fold protein; a 98.9 7.7E-10 2.6E-14 76.5 4.6 38 18-56 4-41 (154)
6 1b67_A Protein (histone HMFA); 98.9 1.4E-09 4.6E-14 64.4 4.6 37 18-56 2-38 (68)
7 1f1e_A Histone fold protein; a 98.9 2.2E-09 7.7E-14 74.1 5.9 46 9-56 73-118 (154)
8 4g92_C HAPE; transcription fac 98.5 2.3E-07 7.7E-12 60.9 5.3 41 15-56 38-78 (119)
9 3b0c_T CENP-T, centromere prot 98.4 1.3E-07 4.4E-12 61.7 3.6 40 14-55 3-42 (111)
10 2byk_A Chrac-16; nucleosome sl 98.4 7.7E-08 2.6E-12 65.2 2.6 44 12-56 13-56 (140)
11 1n1j_B NF-YC; histone-like PAI 98.4 3.9E-07 1.3E-11 57.7 4.3 43 13-56 14-56 (97)
12 1ku5_A HPHA, archaeal histon; 98.3 1.1E-06 3.7E-11 52.3 4.5 36 18-55 6-41 (70)
13 2hue_C Histone H4; mini beta s 98.3 1.1E-06 3.7E-11 54.4 4.5 43 11-55 3-45 (84)
14 1id3_B Histone H4; nucleosome 98.2 1.3E-06 4.6E-11 56.2 4.4 44 10-55 20-63 (102)
15 1tzy_D Histone H4-VI; histone- 97.9 1.3E-05 4.5E-10 51.1 4.9 44 10-55 21-64 (103)
16 2yfw_B Histone H4, H4; cell cy 97.8 2E-05 6.8E-10 50.4 4.0 44 10-55 21-64 (103)
17 1jfi_A Transcription regulator 96.1 0.0084 2.9E-07 37.7 4.4 40 15-55 8-47 (98)
18 3b0b_C CENP-X, centromere prot 95.6 0.022 7.4E-07 35.5 4.8 42 14-55 4-46 (81)
19 2hue_B Histone H3; mini beta s 95.6 0.024 8.1E-07 35.1 4.8 40 16-55 1-43 (77)
20 3v9r_B MHF2, uncharacterized p 95.4 0.013 4.4E-07 37.8 3.2 37 19-55 2-39 (88)
21 4dra_E Centromere protein X; D 95.3 0.03 1E-06 35.3 4.7 42 14-55 8-50 (84)
22 1h3o_B Transcription initiatio 94.4 0.083 2.8E-06 32.6 4.9 38 17-55 4-41 (76)
23 2yfv_A Histone H3-like centrom 93.3 0.068 2.3E-06 34.4 3.2 43 13-55 22-70 (100)
24 1tzy_C Histone H3; histone-fol 92.9 0.11 3.8E-06 35.1 3.9 42 14-55 58-102 (136)
25 3r45_A Histone H3-like centrom 92.4 0.12 4.1E-06 36.0 3.5 43 13-55 72-119 (156)
26 3nqj_A Histone H3-like centrom 91.6 0.19 6.6E-06 31.3 3.5 39 17-55 2-45 (82)
27 3nqu_A Histone H3-like centrom 91.0 0.14 4.8E-06 34.9 2.6 43 13-55 56-103 (140)
28 1bh9_B TAFII28; histone fold, 84.4 1.5 5.1E-05 27.4 4.1 40 18-59 16-63 (89)
29 2nqb_C Histone H2A; nucleosome 80.4 3 0.0001 27.2 4.6 34 16-50 21-54 (123)
30 1tzy_A Histone H2A-IV; histone 78.6 3.5 0.00012 27.1 4.5 34 16-50 23-56 (129)
31 3v9r_A MHF1, uncharacterized p 78.3 3.9 0.00013 25.6 4.5 32 23-54 17-49 (90)
32 1f66_C Histone H2A.Z; nucleoso 78.2 3.7 0.00013 27.0 4.6 35 16-50 25-59 (128)
33 1id3_C Histone H2A.1; nucleoso 74.9 4 0.00014 26.9 4.0 35 15-50 22-56 (131)
34 2f8n_G Core histone macro-H2A. 72.7 6 0.0002 25.6 4.4 33 16-49 20-52 (120)
35 2f8n_K Histone H2A type 1; nuc 72.1 5.7 0.00019 27.0 4.3 34 16-50 42-75 (149)
36 2jss_A Chimera of histone H2B. 69.8 6.5 0.00022 26.9 4.3 35 16-50 103-137 (192)
37 1qpz_A PURA, protein (purine n 68.8 6.5 0.00022 26.6 4.1 31 19-53 12-42 (340)
38 4dra_A Centromere protein S; D 68.1 3.5 0.00012 27.1 2.5 33 23-55 32-65 (113)
39 1uxc_A FRUR (1-57), fructose r 67.4 9.6 0.00033 21.6 4.1 35 18-53 11-45 (65)
40 1taf_B TFIID TBP associated fa 63.4 16 0.00055 21.8 4.7 34 17-52 5-38 (70)
41 2hsg_A Glucose-resistance amyl 60.3 9.9 0.00034 25.5 3.7 32 18-53 13-44 (332)
42 3h5t_A Transcriptional regulat 55.9 13 0.00045 25.3 3.8 31 18-52 20-50 (366)
43 2l8n_A Transcriptional repress 55.9 14 0.00049 21.0 3.4 33 17-53 19-51 (67)
44 2nqb_D Histone H2B; nucleosome 52.8 18 0.00063 24.0 3.9 31 22-53 37-67 (123)
45 3b0b_B CENP-S, centromere prot 49.4 11 0.00037 24.2 2.3 32 23-54 24-56 (107)
46 1tzy_B Histone H2B; histone-fo 49.1 23 0.00077 23.7 3.9 30 23-53 41-70 (126)
47 2jss_A Chimera of histone H2B. 49.1 24 0.00083 24.0 4.2 30 22-52 7-36 (192)
48 3kjx_A Transcriptional regulat 48.4 17 0.00059 24.5 3.3 32 18-53 21-52 (344)
49 3vh5_A CENP-S; histone fold, c 41.6 15 0.00052 24.9 2.2 33 23-55 24-57 (140)
50 1jhg_A Trp operon repressor; c 40.9 15 0.0005 23.3 1.9 30 16-49 67-96 (101)
51 1z4h_A TORI, TOR inhibition pr 40.4 15 0.0005 20.4 1.7 26 17-42 20-46 (66)
52 2bsk_B Mitochondrial import in 39.6 37 0.0013 20.5 3.6 30 28-57 30-62 (90)
53 3ubd_A Ribosomal protein S6 ki 37.9 32 0.0011 24.3 3.6 30 21-50 232-261 (304)
54 2l5a_A Histone H3-like centrom 36.7 27 0.00091 25.5 3.0 40 16-55 9-54 (235)
55 3dbi_A Sugar-binding transcrip 32.9 9.2 0.00031 25.7 0.0 32 18-53 14-45 (338)
56 3dxr_B Mitochondrial import in 32.5 54 0.0019 20.3 3.6 30 28-57 43-75 (95)
57 3dxr_A Mitochondrial import in 31.1 50 0.0017 19.9 3.2 28 29-56 39-68 (89)
58 2ly8_A Budding yeast chaperone 30.6 84 0.0029 20.5 4.4 21 35-55 24-44 (121)
59 4aw0_A HPDK1, 3-phosphoinositi 30.5 54 0.0018 23.4 3.7 30 21-50 240-269 (311)
60 2bsk_A Mitochondrial import in 30.3 63 0.0022 19.5 3.6 30 28-57 29-60 (89)
61 3cjh_B Mitochondrial import in 28.8 58 0.002 18.3 3.0 29 29-57 23-53 (64)
62 3ctp_A Periplasmic binding pro 28.8 12 0.0004 25.1 0.0 31 18-52 13-43 (330)
63 3h5o_A Transcriptional regulat 28.7 12 0.00041 25.2 0.0 31 18-52 15-45 (339)
64 3jvd_A Transcriptional regulat 28.3 12 0.00042 25.3 0.0 32 17-52 16-47 (333)
65 1ldd_A APC2WHB, anaphase promo 27.8 60 0.0021 19.5 3.1 35 18-52 22-60 (74)
66 3bil_A Probable LACI-family tr 27.7 13 0.00043 25.4 0.0 32 17-52 18-49 (348)
67 3v8s_A RHO-associated protein 24.8 74 0.0025 22.8 3.6 31 21-51 279-313 (410)
68 3e3m_A Transcriptional regulat 24.5 16 0.00054 24.8 0.0 32 18-53 23-54 (355)
69 2o20_A Catabolite control prot 24.2 16 0.00055 24.5 0.0 33 17-53 15-47 (332)
70 3hsr_A HTH-type transcriptiona 23.9 41 0.0014 19.8 1.8 50 17-66 60-124 (140)
71 1jye_A Lactose operon represso 22.3 18 0.00063 24.5 0.0 32 18-53 14-45 (349)
72 4b9d_A Serine/threonine-protei 22.2 93 0.0032 22.5 3.7 31 20-50 230-261 (350)
73 2i9x_A Putative septation prot 22.0 58 0.002 20.1 2.3 16 38-53 67-82 (87)
74 1iuy_A Cullin-3 homologue; win 20.6 1.1E+02 0.0037 18.7 3.3 20 11-30 17-37 (92)
No 1
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.60 E-value=7.8e-16 Score=108.98 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=40.0
Q ss_pred CCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 11 ~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
...++|+.||+|||.||||++|| +.+|||||+++|++||+|||+.
T Consensus 8 ~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~ 52 (179)
T 1jfi_B 8 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHL 52 (179)
T ss_dssp ----CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHH
Confidence 35669999999999999999999 9999999999999999999985
No 2
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.52 E-value=1.2e-14 Score=91.27 Aligned_cols=45 Identities=42% Similarity=0.646 Sum_probs=38.7
Q ss_pred CCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 12 ~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
++++|+.||+|+|.||||+.+|++.+||+||++++|+|+.+||..
T Consensus 2 ~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~ 46 (93)
T 1n1j_A 2 FREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISF 46 (93)
T ss_dssp -----CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999863
No 3
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.49 E-value=1.4e-14 Score=96.84 Aligned_cols=44 Identities=27% Similarity=0.415 Sum_probs=36.1
Q ss_pred CccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 13 reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
+.+|+.||+|+|.||||+++|.+.+||+||+.+|++|+++||+.
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~ 47 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIF 47 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999974
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.47 E-value=3.9e-14 Score=86.67 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
.+.||+|+|.||||+++| +.+||+||+++|++|++|||+.
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~ 41 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHR 41 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999 7999999999999999999974
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.94 E-value=7.7e-10 Score=76.48 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=36.3
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
.||+|+|.||||++||. .+||+||++.+++|++||+..
T Consensus 4 ~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~ 41 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEY 41 (154)
T ss_dssp CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHH
Confidence 69999999999999997 999999999999999999974
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.92 E-value=1.4e-09 Score=64.37 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=34.4
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
.||+|+|.||||+. ++.+||++|++++|+|+.+||..
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~ 38 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEE 38 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHH
Confidence 59999999999999 67999999999999999999963
No 7
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.90 E-value=2.2e-09 Score=74.15 Aligned_cols=46 Identities=11% Similarity=0.082 Sum_probs=41.1
Q ss_pred CCCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 9 RSNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 9 ~~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
++....+|+.||+|+|.||||++ ...+||++|++.+++|+++|+..
T Consensus 73 ~~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~ 118 (154)
T 1f1e_A 73 EGVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEE 118 (154)
T ss_dssp TTSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHH
T ss_pred ccCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHH
Confidence 34556688999999999999999 67899999999999999999864
No 8
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.47 E-value=2.3e-07 Score=60.90 Aligned_cols=41 Identities=20% Similarity=0.268 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 15 EDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 15 qD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
.+..||+|.|.||||.. |...+||++|..+++.|+.+||..
T Consensus 38 k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~ 78 (119)
T 4g92_C 38 KIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITE 78 (119)
T ss_dssp SCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHH
Confidence 46779999999999865 999999999999999999999864
No 9
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.45 E-value=1.3e-07 Score=61.73 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=31.4
Q ss_pred ccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289 14 EEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 14 eqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl 55 (71)
.+|++||+++|.||||+. ...+||+++++.+++|+.+|+.
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~ 42 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFK 42 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999 6789999999999999999975
No 10
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=98.44 E-value=7.7e-08 Score=65.23 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=26.2
Q ss_pred CCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 12 IQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 12 ~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
....++.||+|.|.||||.. |...+||++|..+|+.|+..||..
T Consensus 13 ~~~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~ 56 (140)
T 2byk_A 13 PPTAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRH 56 (140)
T ss_dssp ----------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHH
Confidence 34578999999999999998 888999999999999999999974
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.37 E-value=3.9e-07 Score=57.66 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=34.7
Q ss_pred CccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHhh
Q 045289 13 QEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 13 reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
...++.||+|.|.||||.. |...+||++|..++..|+..||..
T Consensus 14 ~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~ 56 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITE 56 (97)
T ss_dssp ------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHH
T ss_pred CcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHH
Confidence 4467889999999999998 777899999999999999999963
No 12
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.27 E-value=1.1e-06 Score=52.34 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=33.5
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl 55 (71)
.||+++|.||+|+. +..+||++|.+.+|+|+.+|+.
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~ 41 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAI 41 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHH
Confidence 69999999999997 5689999999999999999985
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.26 E-value=1.1e-06 Score=54.43 Aligned_cols=43 Identities=9% Similarity=0.022 Sum_probs=38.8
Q ss_pred CCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289 11 NIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 11 ~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl 55 (71)
.++++...||+++|.||+++.-. .+||++|.+.+++|+.+|+.
T Consensus 3 ~~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~ 45 (84)
T 2hue_C 3 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLE 45 (84)
T ss_dssp CGGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHH
Confidence 46788899999999999999853 68999999999999999985
No 14
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.22 E-value=1.3e-06 Score=56.19 Aligned_cols=44 Identities=9% Similarity=0.005 Sum_probs=37.0
Q ss_pred CCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289 10 SNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 10 ~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl 55 (71)
..++++.+.||+++|.||+++.-+ .+||++|.+.+++|+.+|+.
T Consensus 20 k~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~ 63 (102)
T 1id3_B 20 KILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLE 63 (102)
T ss_dssp ----CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHH
Confidence 456888999999999999999853 68999999999999999985
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=97.94 E-value=1.3e-05 Score=51.12 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289 10 SNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 10 ~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl 55 (71)
...+++++.||+++|.||+++.-. .+||++|.+.+++|+.+|+.
T Consensus 21 k~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~ 64 (103)
T 1tzy_D 21 KVLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLE 64 (103)
T ss_dssp CCCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHH
T ss_pred cchhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHH
Confidence 347889999999999999999865 58999999999999999985
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=97.80 E-value=2e-05 Score=50.36 Aligned_cols=44 Identities=9% Similarity=0.000 Sum_probs=32.6
Q ss_pred CCCCccccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289 10 SNIQEEDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 10 ~~~reqD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl 55 (71)
...+++++.||+++|.||+++.-. .+||++|.+.+++|+.+|+.
T Consensus 21 ~~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~ 64 (103)
T 2yfw_B 21 KILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLE 64 (103)
T ss_dssp ---------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHH
T ss_pred hhhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHH
Confidence 345888999999999999999865 58999999999999999985
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.10 E-value=0.0084 Score=37.74 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=34.0
Q ss_pred cccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289 15 EDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 15 qD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl 55 (71)
-...||++-|.||||. -|...+||.+|.-++..++.-|+.
T Consensus 8 ~~~~fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~ 47 (98)
T 1jfi_A 8 YNARFPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLE 47 (98)
T ss_dssp --CCCCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHH
Confidence 4578999999999996 566679999999999999988875
No 18
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=95.62 E-value=0.022 Score=35.55 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=34.3
Q ss_pred ccccccchHHHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289 14 EEDRYLPIANISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 14 eqD~~LPiAnI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl 55 (71)
+++-.+|...|+||++.... ...||+++|-.++++..--||.
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~ 46 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVR 46 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHH
Confidence 45678999999999999997 5789999999998888777763
No 19
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=95.57 E-value=0.024 Score=35.14 Aligned_cols=40 Identities=10% Similarity=0.058 Sum_probs=34.4
Q ss_pred ccccchHHHHHHHHhhCC---CCCcccHhHHHHHHHHHHHHHh
Q 045289 16 DRYLPIANISWIIKKAFP---ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP---~~aKISKeAKe~iqeCvsEFIl 55 (71)
|+.+|++-.+|++|++.. .+.+++.+|..++||.+-.|+.
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv 43 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV 43 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHH
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHH
Confidence 578999999999999943 5789999999999999888764
No 20
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.013 Score=37.75 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=33.0
Q ss_pred cchHHHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289 19 LPIANISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 19 LPiAnI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl 55 (71)
+|..+|+||++...- ++.+||+||-.++++..--||-
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVr 39 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFID 39 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHH
Confidence 799999999997775 5789999999999999988874
No 21
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=95.30 E-value=0.03 Score=35.32 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=34.5
Q ss_pred ccccccchHHHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289 14 EEDRYLPIANISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 14 eqD~~LPiAnI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl 55 (71)
..+..+|..+|+||++...- +..|||+||-.++++..--||.
T Consensus 8 ~~~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~ 50 (84)
T 4dra_E 8 GAGSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVV 50 (84)
T ss_dssp ---CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHH
Confidence 34678999999999998886 6899999999999988877764
No 22
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=94.43 E-value=0.083 Score=32.62 Aligned_cols=38 Identities=8% Similarity=0.184 Sum_probs=34.1
Q ss_pred cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHHHh
Q 045289 17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEFIl 55 (71)
+-|++.++.-+++++=| +..+.+++.+++.+.+.+||-
T Consensus 4 ~vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~ 41 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIE 41 (76)
T ss_dssp CSSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHH
Confidence 45899999999999855 799999999999999999984
No 23
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=93.33 E-value=0.068 Score=34.40 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=31.8
Q ss_pred CccccccchHHHHHHHHhhCC------CCCcccHhHHHHHHHHHHHHHh
Q 045289 13 QEEDRYLPIANISWIIKKAFP------ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 13 reqD~~LPiAnI~RIMK~aLP------~~aKISKeAKe~iqeCvsEFIl 55 (71)
+..++.+|++-.+|+++++.. .+..++.+|..++||.+-.|+.
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv 70 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLV 70 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHH
Confidence 456899999999999999983 2678999999999999888764
No 24
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=92.94 E-value=0.11 Score=35.10 Aligned_cols=42 Identities=10% Similarity=0.089 Sum_probs=36.5
Q ss_pred ccccccchHHHHHHHHhhCC---CCCcccHhHHHHHHHHHHHHHh
Q 045289 14 EEDRYLPIANISWIIKKAFP---ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 14 eqD~~LPiAnI~RIMK~aLP---~~aKISKeAKe~iqeCvsEFIl 55 (71)
..|+.+|++-..|+++++.. .+..++.+|.+++||.+-.|+.
T Consensus 58 st~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv 102 (136)
T 1tzy_C 58 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV 102 (136)
T ss_dssp CCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHH
T ss_pred chhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHH
Confidence 45889999999999999943 5789999999999999888764
No 25
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=92.40 E-value=0.12 Score=35.97 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=35.5
Q ss_pred CccccccchHHHHHHHHhhCC-----CCCcccHhHHHHHHHHHHHHHh
Q 045289 13 QEEDRYLPIANISWIIKKAFP-----ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 13 reqD~~LPiAnI~RIMK~aLP-----~~aKISKeAKe~iqeCvsEFIl 55 (71)
+..++.+|++-..||++++.- .+..++.+|.+++||.+-.|+.
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV 119 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLV 119 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHH
Confidence 456899999999999999873 2578999999999999988874
No 26
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=91.57 E-value=0.19 Score=31.33 Aligned_cols=39 Identities=10% Similarity=-0.008 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHhhCC-----CCCcccHhHHHHHHHHHHHHHh
Q 045289 17 RYLPIANISWIIKKAFP-----ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 17 ~~LPiAnI~RIMK~aLP-----~~aKISKeAKe~iqeCvsEFIl 55 (71)
+.+|++-.+|++|++-. .+.+++.+|..++||.+-.|+.
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv 45 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLV 45 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHH
Confidence 46899999999999882 3679999999999999988874
No 27
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=90.99 E-value=0.14 Score=34.90 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=35.5
Q ss_pred CccccccchHHHHHHHHhhCC-----CCCcccHhHHHHHHHHHHHHHh
Q 045289 13 QEEDRYLPIANISWIIKKAFP-----ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 13 reqD~~LPiAnI~RIMK~aLP-----~~aKISKeAKe~iqeCvsEFIl 55 (71)
+..|+.+|++-..|+++++.- .+..++.+|.+++||.+-.|+.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv 103 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLV 103 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHH
Confidence 456899999999999999872 3679999999999999988874
No 28
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=84.36 E-value=1.5 Score=27.36 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=26.8
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhH--------HHHHHHHHHHHHhhccc
Q 045289 18 YLPIANISWIIKKAFPANDIITKNA--------KQIVQGCSKACSLARDE 59 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeA--------Ke~iqeCvsEFIl~~~~ 59 (71)
.||+++|-|+|+..+ +.+++.+. |..|.|.+.+-..++++
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~ 63 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEK 63 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999998 44555554 44555555554455544
No 29
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=80.40 E-value=3 Score=27.23 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=27.4
Q ss_pred ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289 16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCS 50 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCv 50 (71)
.+.||++-|.|+||+.--.. +|+.+|...+..+.
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~-RV~~~A~VyLaAvL 54 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAE-RVGAGAPVYLAAVM 54 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCS-EECTHHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccccc-ccchhhHHHHHHHH
Confidence 67899999999999984443 89999988766544
No 30
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=78.56 E-value=3.5 Score=27.11 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=27.4
Q ss_pred ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289 16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCS 50 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCv 50 (71)
.+.||++-|.|+||+.--.. +|+.+|...+..+.
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvL 56 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVL 56 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSS-EECTHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHcccccc-ccchhhHHHHHHHH
Confidence 67899999999999974443 89999988766544
No 31
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=78.35 E-value=3.9 Score=25.60 Aligned_cols=32 Identities=3% Similarity=-0.117 Sum_probs=29.1
Q ss_pred HHHHHHHhhCCCC-CcccHhHHHHHHHHHHHHH
Q 045289 23 NISWIIKKAFPAN-DIITKNAKQIVQGCSKACS 54 (71)
Q Consensus 23 nI~RIMK~aLP~~-aKISKeAKe~iqeCvsEFI 54 (71)
+|+||..+.++.. ..+|+++...+.+.+-+|+
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~ 49 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQL 49 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHH
Confidence 5889999999876 8999999999999999987
No 32
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=78.21 E-value=3.7 Score=26.97 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=28.5
Q ss_pred ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289 16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCS 50 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCv 50 (71)
.+.+|++-|.|+||+.-....+|+.+|.-.+..+.
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvL 59 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAIL 59 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHH
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHH
Confidence 67899999999999987555689999987765543
No 33
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=74.87 E-value=4 Score=26.91 Aligned_cols=35 Identities=11% Similarity=0.192 Sum_probs=27.5
Q ss_pred cccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289 15 EDRYLPIANISWIIKKAFPANDIITKNAKQIVQGCS 50 (71)
Q Consensus 15 qD~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCv 50 (71)
-.+.||++-|.|+||+.--.. +|+.+|...+..+.
T Consensus 22 agLqfPV~rI~R~Lk~~~~a~-RVs~~A~VyLaAvL 56 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNYAQ-RIGSGAPVYLTAVL 56 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCSCS-EECSSHHHHHHHHH
T ss_pred CCeecCHHHHHHHHHcccccc-ccchhhHHHHHHHH
Confidence 367899999999999974443 89999987765543
No 34
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=72.72 E-value=6 Score=25.64 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=26.8
Q ss_pred ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHH
Q 045289 16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeC 49 (71)
.+.+|++-|.|+||+.--. -+|+.+|...+..+
T Consensus 20 gLqfPV~ri~R~Lk~~~~a-~RV~~~A~VyLaAv 52 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPK-YRIGVGAPVYMAAV 52 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSS-CEECTHHHHHHHHH
T ss_pred CccCChHHHHHHHHcCccc-cccccchHHHHHHH
Confidence 5789999999999998543 48999998776544
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=72.14 E-value=5.7 Score=26.96 Aligned_cols=34 Identities=9% Similarity=0.178 Sum_probs=27.1
Q ss_pred ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289 16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCS 50 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCv 50 (71)
.+.||++-|.|+||+.--.. +|+.+|...+..+.
T Consensus 42 gLqFPVgrI~R~LK~~~~a~-RVs~~A~VyLAAVL 75 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVL 75 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSCS-EECTTHHHHHHHHH
T ss_pred CeeccHHHHHHHHHcccccc-ccCcCcHHHHHHHH
Confidence 57899999999999985443 89999988765443
No 36
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=69.83 E-value=6.5 Score=26.92 Aligned_cols=35 Identities=11% Similarity=0.174 Sum_probs=27.6
Q ss_pred ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289 16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGCS 50 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCv 50 (71)
.+.+|++-|.|+||+.--...+|+.+|...+..+.
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavL 137 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVL 137 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHH
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHH
Confidence 67899999999999984434589999887765543
No 37
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=68.82 E-value=6.5 Score=26.55 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=26.0
Q ss_pred cchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 19 LPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 19 LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
.-++||+|.++. ...||.+.|+-|++.+.|-
T Consensus 12 VS~~TVSrvLn~----~~~vs~~tr~rV~~~a~~l 42 (340)
T 1qpz_A 12 VSTTTVSHVINK----TRFVAEETRNAVWAAIKEL 42 (340)
T ss_dssp SCHHHHHHHHHT----CSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcC----cCCCCHHHHHHHHHHHHHh
Confidence 567999999984 3569999999999998774
No 38
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=68.14 E-value=3.5 Score=27.07 Aligned_cols=33 Identities=3% Similarity=-0.042 Sum_probs=28.2
Q ss_pred HHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289 23 NISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 23 nI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl 55 (71)
+|+||++++.. .+.++|+++...+.+.+-+|+.
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~ 65 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCE 65 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHH
Confidence 58899999865 3688999999999999988874
No 39
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=67.37 E-value=9.6 Score=21.65 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=27.0
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
-+..++|+|+++..- ....||.+.++-|.+.+.|+
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 477899999998631 11379999999999988765
No 40
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=63.44 E-value=16 Score=21.78 Aligned_cols=34 Identities=6% Similarity=-0.002 Sum_probs=23.9
Q ss_pred cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHH
Q 045289 17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKA 52 (71)
Q Consensus 17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsE 52 (71)
-.||+++|.+|.+.+= -..+|+||...+.+=+..
T Consensus 5 s~lp~~~v~~iaes~G--i~~lsddaa~~LA~dvEy 38 (70)
T 1taf_B 5 SSISAESMKVIAESIG--VGSLSDDAAKELAEDVSI 38 (70)
T ss_dssp CCCCHHHHHHHHHHTT--CCCBCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHH
Confidence 3599999999987652 237888887666555443
No 41
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=60.30 E-value=9.9 Score=25.45 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=26.3
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
..-++||+|.++. ...||.+.|+-|++.+.|-
T Consensus 13 gVS~~TVSrvln~----~~~vs~~tr~rV~~aa~~l 44 (332)
T 2hsg_A 13 SVSMATVSRVVNG----NPNVKPSTRKKVLETIERL 44 (332)
T ss_dssp TSCHHHHHHHHTT----CTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcC----CCCCCHHHHHHHHHHHHHH
Confidence 3567999999986 2469999999999998873
No 42
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=55.91 E-value=13 Score=25.27 Aligned_cols=31 Identities=6% Similarity=0.123 Sum_probs=25.8
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKA 52 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsE 52 (71)
-+-++||+|.++. ...||.+.|+-|++.+.|
T Consensus 20 GVS~~TVSrvLn~----~~~Vs~~tr~rV~~~a~~ 50 (366)
T 3h5t_A 20 GISRTTVSNAYNR----PEQLSAELRQRILDTAED 50 (366)
T ss_dssp TSCHHHHHHHHHC----GGGSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC----CCCCCHHHHHHHHHHHHH
Confidence 3568899999885 347999999999999876
No 43
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=55.85 E-value=14 Score=21.03 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=26.0
Q ss_pred cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
..+..++|+|+++. ...||.+.++-|.+.+.|+
T Consensus 19 aGVS~sTVSr~ln~----~~~vs~~t~~rV~~~a~~l 51 (67)
T 2l8n_A 19 AKVSTATVSRALMN----PDKVSQATRNRVEKAAREV 51 (67)
T ss_dssp TTCCHHHHHHTTTC----CCCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHcC----CCCCCHHHHHHHHHHHHHh
Confidence 35778899887764 3469999999999988775
No 44
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=52.80 E-value=18 Score=24.01 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 22 ANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 22 AnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
..|+|++|++-|. ..||.+|-.+|.-.+..+
T Consensus 37 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDi 67 (123)
T 2nqb_D 37 IYIYTVLKQVHPD-TGISSKAMSIMNSFVNDI 67 (123)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHH
Confidence 4589999999774 789999988777665443
No 45
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=49.44 E-value=11 Score=24.24 Aligned_cols=32 Identities=3% Similarity=0.015 Sum_probs=27.1
Q ss_pred HHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHH
Q 045289 23 NISWIIKKAFP-ANDIITKNAKQIVQGCSKACS 54 (71)
Q Consensus 23 nI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFI 54 (71)
+|.||.++..- .+.++|+++...+.+.+-+|+
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~ 56 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQC 56 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHH
Confidence 48899988863 357899999999999999986
No 46
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=49.12 E-value=23 Score=23.66 Aligned_cols=30 Identities=17% Similarity=0.228 Sum_probs=23.8
Q ss_pred HHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 23 NISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 23 nI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
.|+|++|++-|. ..||.+|-.+|.-.+..+
T Consensus 41 YIyKVLKQVhpd-~gISskAm~ImnSfvnDi 70 (126)
T 1tzy_B 41 YVYKVLKQVHPD-TGISSKAMGIMNSFVNDI 70 (126)
T ss_dssp HHHHHHHHHCTT-CEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CCcCHHHHHHHHHHHHHH
Confidence 599999999875 779999988877665443
No 47
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=49.07 E-value=24 Score=24.03 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=23.4
Q ss_pred HHHHHHHHhhCCCCCcccHhHHHHHHHHHHH
Q 045289 22 ANISWIIKKAFPANDIITKNAKQIVQGCSKA 52 (71)
Q Consensus 22 AnI~RIMK~aLP~~aKISKeAKe~iqeCvsE 52 (71)
-.|+|++|++-| +..||++|-..|...+..
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~d 36 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVND 36 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHH
Confidence 358999999987 577999998876665543
No 48
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=48.38 E-value=17 Score=24.47 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=26.1
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
.+-++||+|.++.. ..||.+.|+-|++.+.|-
T Consensus 21 gVS~~TVSr~Ln~~----~~vs~~tr~rV~~~~~~l 52 (344)
T 3kjx_A 21 GVSEMTVSRVLRNR----GDVSDATRARVLAAAKEL 52 (344)
T ss_dssp CCCSHHHHHHHTTC----SCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHHh
Confidence 36678999988763 479999999999998774
No 49
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=41.59 E-value=15 Score=24.86 Aligned_cols=33 Identities=3% Similarity=-0.027 Sum_probs=27.8
Q ss_pred HHHHHHHhhCC-CCCcccHhHHHHHHHHHHHHHh
Q 045289 23 NISWIIKKAFP-ANDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 23 nI~RIMK~aLP-~~aKISKeAKe~iqeCvsEFIl 55 (71)
+|+||.++... .+..||+++...+.+.+-+|+.
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e 57 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAE 57 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHH
Confidence 58899888754 4789999999999999988874
No 50
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=40.86 E-value=15 Score=23.26 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=23.3
Q ss_pred ccccchHHHHHHHHhhCCCCCcccHhHHHHHHHH
Q 045289 16 DRYLPIANISWIIKKAFPANDIITKNAKQIVQGC 49 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeC 49 (71)
.+..-.|+|+|+ +++| -+.+++-|+.+..-
T Consensus 67 ~lGiS~stISRi-~r~L---~~l~~~~k~~l~~~ 96 (101)
T 1jhg_A 67 ELGAGIATITRG-SNSL---KAAPVELRQWLEEV 96 (101)
T ss_dssp HHCCCHHHHHHH-HHHH---HHSCHHHHHHHHHH
T ss_pred HHCCChhhhhHH-HHHH---HHccHHHHHHHHHH
Confidence 345678999999 9998 56788888877653
No 51
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=40.43 E-value=15 Score=20.39 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=20.7
Q ss_pred cccchHHHHHHHHhh-CCCCCcccHhH
Q 045289 17 RYLPIANISWIIKKA-FPANDIITKNA 42 (71)
Q Consensus 17 ~~LPiAnI~RIMK~a-LP~~aKISKeA 42 (71)
+.+..++|+|.+++- +|.-.||++-+
T Consensus 20 lgvsrstiy~~~~~g~fP~piklG~~~ 46 (66)
T 1z4h_A 20 TGFGKTFIYDRIKSGDLPKAKVIHGRA 46 (66)
T ss_dssp HSSCHHHHHHHHHHHHCCCSEESSSCE
T ss_pred HCcCHHHHHHHHHCCCCCCCEEeCCCe
Confidence 457889999999875 88878888654
No 52
>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=39.64 E-value=37 Score=20.46 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=24.9
Q ss_pred HHhhCC---CCCcccHhHHHHHHHHHHHHHhhc
Q 045289 28 IKKAFP---ANDIITKNAKQIVQGCSKACSLAR 57 (71)
Q Consensus 28 MK~aLP---~~aKISKeAKe~iqeCvsEFIl~~ 57 (71)
.++.+| ++.++++.-..||..||.-|+-+.
T Consensus 30 f~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~ 62 (90)
T 2bsk_B 30 HRKCVPPHYKEAELSKGESVCLDRCVSKYLDIH 62 (90)
T ss_dssp HHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHH
Confidence 567775 578899999999999999998653
No 53
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=37.94 E-value=32 Score=24.28 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289 21 IANISWIIKKAFPANDIITKNAKQIVQGCS 50 (71)
Q Consensus 21 iAnI~RIMK~aLP~~aKISKeAKe~iqeCv 50 (71)
...+.+|++..++..-.+|.+++++|+.|-
T Consensus 232 ~~~~~~i~~~~~~~p~~~s~~~~~li~~~L 261 (304)
T 3ubd_A 232 KETMTMILKAKLGMPQFLSPEAQSLLRMLF 261 (304)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCCcCCHHHHHHHHHHc
Confidence 455667777766655679999999999984
No 54
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=36.66 E-value=27 Score=25.47 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=30.9
Q ss_pred ccccchHHHHHHHHhhCCC------CCcccHhHHHHHHHHHHHHHh
Q 045289 16 DRYLPIANISWIIKKAFPA------NDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 16 D~~LPiAnI~RIMK~aLP~------~aKISKeAKe~iqeCvsEFIl 55 (71)
.+.+|++--+|++++.... +.++..+|-.++||++--|+.
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV 54 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLV 54 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHH
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHH
Confidence 4677888888888887642 578999999999999877764
No 55
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=32.92 E-value=9.2 Score=25.70 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
-+-++||+|.++. ...||.+.|+-|++.+.|-
T Consensus 14 gVS~~TVSrvln~----~~~vs~~tr~rV~~~a~~l 45 (338)
T 3dbi_A 14 GVSKATVSRVLSG----NGYVSQETKDRVFQAVEES 45 (338)
T ss_dssp ------------------------------------
T ss_pred CcCHHHHHHHHCC----CCCCCHHHHHHHHHHHHHH
Confidence 3567889998876 3479999999999988763
No 56
>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=32.51 E-value=54 Score=20.32 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHhhCC---CCCcccHhHHHHHHHHHHHHHhhc
Q 045289 28 IKKAFP---ANDIITKNAKQIVQGCSKACSLAR 57 (71)
Q Consensus 28 MK~aLP---~~aKISKeAKe~iqeCvsEFIl~~ 57 (71)
-++.++ +..++++.-..||..||.-|+-+.
T Consensus 43 f~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~ 75 (95)
T 3dxr_B 43 YKKCINTSYSEGELNKNESSCLDRCVAKYFETN 75 (95)
T ss_dssp HHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 456667 378899999999999999998653
No 57
>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}
Probab=31.13 E-value=50 Score=19.95 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=22.9
Q ss_pred HhhCC--CCCcccHhHHHHHHHHHHHHHhh
Q 045289 29 KKAFP--ANDIITKNAKQIVQGCSKACSLA 56 (71)
Q Consensus 29 K~aLP--~~aKISKeAKe~iqeCvsEFIl~ 56 (71)
++.++ ++.++++.-..||..||.-|+-+
T Consensus 39 ~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~ 68 (89)
T 3dxr_A 39 TDCVNDFTTSKLTNKEQTCIMKCSEKFLKH 68 (89)
T ss_dssp HHHCCCCSSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCCchHhHHHHHHHHHHHHH
Confidence 44555 56889999999999999999865
No 58
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=30.62 E-value=84 Score=20.49 Aligned_cols=21 Identities=19% Similarity=-0.004 Sum_probs=18.5
Q ss_pred CCcccHhHHHHHHHHHHHHHh
Q 045289 35 NDIITKNAKQIVQGCSKACSL 55 (71)
Q Consensus 35 ~aKISKeAKe~iqeCvsEFIl 55 (71)
+.++..+|-.++||++--|+.
T Consensus 24 ~lRfq~~Al~ALQeAsEayLV 44 (121)
T 2ly8_A 24 DLRWQSMAIMALQEASEAYLV 44 (121)
T ss_dssp SCCBCHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHH
Confidence 679999999999999888864
No 59
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=30.47 E-value=54 Score=23.37 Aligned_cols=30 Identities=17% Similarity=0.104 Sum_probs=21.6
Q ss_pred hHHHHHHHHhhCCCCCcccHhHHHHHHHHH
Q 045289 21 IANISWIIKKAFPANDIITKNAKQIVQGCS 50 (71)
Q Consensus 21 iAnI~RIMK~aLP~~aKISKeAKe~iqeCv 50 (71)
...+.+|++..++-.-.+|.+++++|+.|-
T Consensus 240 ~~~~~~i~~~~~~~p~~~s~~~~dli~~lL 269 (311)
T 4aw0_A 240 GLIFAKIIKLEYDFPEKFFPKARDLVEKLL 269 (311)
T ss_dssp HHHHHHHHHTCCCCCTTCCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCCcccCHHHHHHHHHHc
Confidence 344566776665444579999999999884
No 60
>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1
Probab=30.33 E-value=63 Score=19.52 Aligned_cols=30 Identities=3% Similarity=0.049 Sum_probs=23.8
Q ss_pred HHhhCC--CCCcccHhHHHHHHHHHHHHHhhc
Q 045289 28 IKKAFP--ANDIITKNAKQIVQGCSKACSLAR 57 (71)
Q Consensus 28 MK~aLP--~~aKISKeAKe~iqeCvsEFIl~~ 57 (71)
-++.++ ++.++++.-..||..||.-|+-+.
T Consensus 29 f~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~ 60 (89)
T 2bsk_A 29 FLDCVKDFTTREVKPEETTCSEHCLQKYLKMT 60 (89)
T ss_dssp HHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccCCCCcCCchHhHHHHHHHHHHHHHH
Confidence 345565 567899999999999999998653
No 61
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=28.82 E-value=58 Score=18.28 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=22.7
Q ss_pred HhhCC--CCCcccHhHHHHHHHHHHHHHhhc
Q 045289 29 KKAFP--ANDIITKNAKQIVQGCSKACSLAR 57 (71)
Q Consensus 29 K~aLP--~~aKISKeAKe~iqeCvsEFIl~~ 57 (71)
++.+| ++.++++.-..||..||.-|+-+.
T Consensus 23 ~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~ 53 (64)
T 3cjh_B 23 KKCVESVNDSNLSSQEEQCLSNCVNRFLDTN 53 (64)
T ss_dssp HHHCCCCSSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcccCCCCcCChhHhHHHHHHHHHHHHHH
Confidence 34444 467899999999999999998653
No 62
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=28.81 E-value=12 Score=25.13 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKA 52 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsE 52 (71)
.+-++||+|.++. ...||.+.|+-|++.+.|
T Consensus 13 gVS~~TVSrvln~----~~~vs~~tr~rV~~~~~~ 43 (330)
T 3ctp_A 13 GISIATVSRHLNN----TGYVSEDAREKIQKVVDE 43 (330)
T ss_dssp -----------------------------------
T ss_pred CCCHHHHHHHHcC----CCCCCHHHHHHHHHHHHH
Confidence 3567889998876 246999999999988766
No 63
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=28.68 E-value=12 Score=25.21 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKA 52 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsE 52 (71)
-+-++||+|.++. ...||.+.|+-|++.+.|
T Consensus 15 gVS~~TVSr~Ln~----~~~vs~~tr~rV~~~~~~ 45 (339)
T 3h5o_A 15 GVSAITVSRVLNQ----PQQVSEQLREKVMQAVDA 45 (339)
T ss_dssp -----------------------------------
T ss_pred CCCHHHHHHHHcC----CCCCCHHHHHHHHHHHHH
Confidence 3567889888876 347999999999998866
No 64
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=28.34 E-value=12 Score=25.34 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHH
Q 045289 17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKA 52 (71)
Q Consensus 17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsE 52 (71)
..+-++||+|.++. ...||.+.|+-|++.+.|
T Consensus 16 agVS~~TVSr~Ln~----~~~vs~~tr~rV~~~a~~ 47 (333)
T 3jvd_A 16 AGVGYATASRALSG----KGYVSPQTREKVQAAAKE 47 (333)
T ss_dssp ------------------------------------
T ss_pred HCcCHHHHHHHHcC----CCCCCHHHHHHHHHHHHH
Confidence 34678889988875 457999999999998766
No 65
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=27.77 E-value=60 Score=19.46 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=26.5
Q ss_pred ccchHHHHHHHHhhCCCCCc---cc-HhHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDI---IT-KNAKQIVQGCSKA 52 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aK---IS-KeAKe~iqeCvsE 52 (71)
.||+.-|.-++|=..|.+.. || .+-++.+++.|.|
T Consensus 22 slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e 60 (74)
T 1ldd_A 22 AMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADE 60 (74)
T ss_dssp SEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 58999999999999987544 33 4667777777765
No 66
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=27.72 E-value=13 Score=25.41 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHH
Q 045289 17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKA 52 (71)
Q Consensus 17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsE 52 (71)
..+-++||+|.++.. ..||.+.|+-|++.+.|
T Consensus 18 aGVS~~TVSrvLn~~----~~Vs~~tr~rV~~aa~~ 49 (348)
T 3bil_A 18 AGVSIATASRALADN----PAVAASTRERIQQLASD 49 (348)
T ss_dssp ------------------------------------
T ss_pred HCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHH
Confidence 346788999988762 46999999999988776
No 67
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=24.76 E-value=74 Score=22.85 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=23.0
Q ss_pred hHHHHHHHHh----hCCCCCcccHhHHHHHHHHHH
Q 045289 21 IANISWIIKK----AFPANDIITKNAKQIVQGCSK 51 (71)
Q Consensus 21 iAnI~RIMK~----aLP~~aKISKeAKe~iqeCvs 51 (71)
.....+|++. ..|....+|++++++|+.|..
T Consensus 279 ~~~~~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~ 313 (410)
T 3v8s_A 279 VGTYSKIMNHKNSLTFPDDNDISKEAKNLICAFLT 313 (410)
T ss_dssp HHHHHHHHTHHHHCCCCTTCCCCHHHHHHHHHHSS
T ss_pred hhHHHHHHhccccccCCCcccccHHHHHHHHHHcc
Confidence 4456677654 356667899999999999864
No 68
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=24.46 E-value=16 Score=24.85 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
.+-++||+|.++.. ..||.+.|+-|++.+.|-
T Consensus 23 gVS~~TVSr~Ln~~----~~vs~~tr~rV~~~a~~l 54 (355)
T 3e3m_A 23 GVSRMTVSRALKKD----SPISSETRERILKVVKDM 54 (355)
T ss_dssp ------------------------------------
T ss_pred CCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHHh
Confidence 46678888887653 479999999999987663
No 69
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=24.24 E-value=16 Score=24.49 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred cccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 17 RYLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 17 ~~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
..+-++||+|.++.. ..||.+.|+-|++.+.|-
T Consensus 15 agVS~~TVSrvln~~----~~vs~~tr~rV~~~a~~l 47 (332)
T 2o20_A 15 AGVSMATVSRVVNGN----ANVKEKTRQKVLEAIAEL 47 (332)
T ss_dssp -------------------------------------
T ss_pred HCCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHHH
Confidence 346678999988753 469999999999887763
No 70
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=23.89 E-value=41 Score=19.84 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=34.4
Q ss_pred cccchHHHHHHHHhhC----------CCC-----CcccHhHHHHHHHHHHHHHhhcccccccccc
Q 045289 17 RYLPIANISWIIKKAF----------PAN-----DIITKNAKQIVQGCSKACSLARDEMEFDNEE 66 (71)
Q Consensus 17 ~~LPiAnI~RIMK~aL----------P~~-----aKISKeAKe~iqeCvsEFIl~~~~~~~~~~~ 66 (71)
+.++.++|+|++++-. |.+ ..++++.++++++....+-.+...+.|+.+|
T Consensus 60 l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~l~~~e 124 (140)
T 3hsr_A 60 VFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEISVKVFNEFNISERE 124 (140)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHHHHHHHHHTSCCCHHH
T ss_pred HCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4578889998877654 222 3589999999998887776666655555554
No 71
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=22.34 E-value=18 Score=24.52 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=0.0
Q ss_pred ccchHHHHHHHHhhCCCCCcccHhHHHHHHHHHHHH
Q 045289 18 YLPIANISWIIKKAFPANDIITKNAKQIVQGCSKAC 53 (71)
Q Consensus 18 ~LPiAnI~RIMK~aLP~~aKISKeAKe~iqeCvsEF 53 (71)
.+-++||+|.++.. ..||.+.|+-|++.+.|-
T Consensus 14 GVS~~TVSrvLn~~----~~vs~~tr~rV~~~a~~l 45 (349)
T 1jye_A 14 GVSYQTVSRVVNQA----SHVSAKTREKVEAAMAEL 45 (349)
T ss_dssp ------------------------------------
T ss_pred CCCHHHHHHHHcCC----CCCCHHHHHHHHHHHHHH
Confidence 35678899988752 469999999999887763
No 72
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=22.15 E-value=93 Score=22.50 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=24.0
Q ss_pred chHHHHHHHHhhCCC-CCcccHhHHHHHHHHH
Q 045289 20 PIANISWIIKKAFPA-NDIITKNAKQIVQGCS 50 (71)
Q Consensus 20 PiAnI~RIMK~aLP~-~aKISKeAKe~iqeCv 50 (71)
+...+.+|++...|+ ...+|.+++++|..|-
T Consensus 230 ~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L 261 (350)
T 4b9d_A 230 MKNLVLKIISGSFPPVSLHYSYDLRSLVSQLF 261 (350)
T ss_dssp HHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCCCccCCHHHHHHHHHHc
Confidence 355677888877764 4679999999999984
No 73
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.02 E-value=58 Score=20.05 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=14.2
Q ss_pred ccHhHHHHHHHHHHHH
Q 045289 38 ITKNAKQIVQGCSKAC 53 (71)
Q Consensus 38 ISKeAKe~iqeCvsEF 53 (71)
|++|+|+-||+++-+-
T Consensus 67 it~e~Re~i~~aVl~a 82 (87)
T 2i9x_A 67 INSDMRQEIQDAVMKV 82 (87)
T ss_dssp CSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999998763
No 74
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=20.63 E-value=1.1e+02 Score=18.69 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=13.8
Q ss_pred CCCccccccc-hHHHHHHHHh
Q 045289 11 NIQEEDRYLP-IANISWIIKK 30 (71)
Q Consensus 11 ~~reqD~~LP-iAnI~RIMK~ 30 (71)
.--++||.+= -|.|.||||.
T Consensus 17 ~~v~~dR~~~i~AaIVRIMK~ 37 (92)
T 1iuy_A 17 QKVDDDRKHEIEAAIVRIMKS 37 (92)
T ss_dssp SCSCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHeeeeeeehhhc
Confidence 4445676654 4788999985
Done!