BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045291
(682 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 143/499 (28%), Positives = 230/499 (46%), Gaps = 91/499 (18%)
Query: 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
SL +LDLS N+ + +TT L + + L++L + ++L FP
Sbjct: 101 SLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLD----------FPG------- 142
Query: 92 YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNS 151
+V+G L+ SLE L +S I+ ++ + LK+L++SG+ +
Sbjct: 143 --KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI---- 190
Query: 152 SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL 211
S +D C V+L+ L ++ N+ +P+ L + ++L+ LD+S N+L+G S + +
Sbjct: 191 SGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 246
Query: 212 TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLL 271
T +++L +S N F PI PL L+ N+ EI L+ L L L
Sbjct: 247 TELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDL 301
Query: 272 SSSYGDGFIFPKF------------------------LYHQHDLEFVDLSHIKMNGEFPT 307
S ++ G + P F L L+ +DLS + +GE P
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 308 WLLENNAKLETLFLINDSIGGPF--RLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365
L +A L TL L +++ GP L +P L+ L + NN F G +P + + L
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SEL 420
Query: 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQ 425
S ++S N L G+IPSS G++ L+ L L N L GEIP+ L
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL------------------ 462
Query: 426 GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR 485
M+ + L+ L+L+ N GEIP LS C++L + L+NN L+G+IP+W+G L
Sbjct: 463 --MYVKT-----LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515
Query: 486 LQYIIMPNNHLEGPIPVEF 504
L + + NN G IP E
Sbjct: 516 LAILKLSNNSFSGNIPAEL 534
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 122/447 (27%), Positives = 206/447 (46%), Gaps = 45/447 (10%)
Query: 160 CSLVHLQELRMADNDLRGSLPW--CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
CS L L ++ N L G + L + + L+ L+VS N L S + L S+E+L
Sbjct: 98 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 218 ILSDNHFQIPISLEPLFNHS--RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSY 275
LS N + + + LK N+++ ++ S + ++ S+++
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS----SNNF 212
Query: 276 GDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIH 335
G FL L+ +D+S K++G+F + + +L+ L + ++ GP +P
Sbjct: 213 STGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPL 266
Query: 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFG----------- 384
P + L++L ++ N F G +P + +L ++S N +G++P FG
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 385 --------------NMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMF- 429
M+ L++LDLS N +GE+PE L G +
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 430 --SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 487
+N T L+ L L+ N F G+IP +LS CS L L+L+ N LSG IP LG+L++L+
Sbjct: 387 NLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 488 YIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547
+ + N LEG IP E N+++G IPS SN + + LS N+L G
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTG 504
Query: 548 KMPHQLVELKTLEVFSVAYNNLSGEIP 574
++P + L+ L + ++ N+ SG IP
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 188/425 (44%), Gaps = 23/425 (5%)
Query: 182 CLANMTSLRILDVSFNQLTGSISS-SPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLK 240
C A++TSL D+S N L+G +++ + L + ++ L +S N P + + L+
Sbjct: 98 CSASLTSL---DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154
Query: 241 IFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIK 300
+ N ++ L+ +L L +S + G + + +LEF+D+S
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNN 211
Query: 301 MNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD 360
+ P L + + L+ L + + + G F I L+ L++S+N F G +P
Sbjct: 212 FSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-- 267
Query: 361 ILPSLFSFNISTNALHGSIPSSF-GNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXX 419
L SL +++ N G IP G L LDLS NH G +P + +
Sbjct: 268 -LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 420 XXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLSGKIPR 478
+ LK L L N F GE+P+SL+ S SL L L++N+ SG I
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-- 384
Query: 479 WLGNLTR-----LQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLK 533
L NL + LQ + + NN G IP S N +SG IPS+ +L
Sbjct: 385 -LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLS 442
Query: 534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIF 593
++ L L N L G++P +L+ +KTLE + +N+L+GEIP + N S N
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
Query: 594 LCGLP 598
+P
Sbjct: 503 TGEIP 507
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 133/512 (25%), Positives = 202/512 (39%), Gaps = 140/512 (27%)
Query: 121 ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH-----LQELRMADNDL 175
L+ SF + GE SL LS S L +S+ L +L LQEL + +N
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFN 235
G +P L+N + L L +SFN L+G+I SS L L+ + L L N + I E ++
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 236 HSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVD 295
+ L+ D N+L EI P L + +L ++
Sbjct: 466 KT-LETLILDFNDLTGEI----------------------------PSGLSNCTNLNWIS 496
Query: 296 LSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMP 355
LS+ ++ GE P W+ +LE L + L +SNN+F G++P
Sbjct: 497 LSNNRLTGEIPKWI----GRLENLAI---------------------LKLSNNSFSGNIP 531
Query: 356 VEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA-VGCVXX 414
E+GD SL +++TN +G+IP++ F Q ++ N + G+ Y+ G
Sbjct: 532 AELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 415 XXXXXXXXXXQG-------HMFSRN-FNLTN----------------LKWLLLEGNRFVG 450
QG + +RN N+T+ + +L + N G
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXX 510
IP+ + L L L +N +SG IP +G+L L + + +N L+G
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------ 694
Query: 511 XXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
IP S L + +DLS N NLS
Sbjct: 695 -------------RIPQAMSALTMLTEIDLSNN------------------------NLS 717
Query: 571 GEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
G IPE QF TF + + N LCG PLP C
Sbjct: 718 GPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 748
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 143/499 (28%), Positives = 230/499 (46%), Gaps = 91/499 (18%)
Query: 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
SL +LDLS N+ + +TT L + + L++L + ++L FP
Sbjct: 98 SLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLD----------FPG------- 139
Query: 92 YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNS 151
+V+G L+ SLE L +S I+ ++ + LK+L++SG+ +
Sbjct: 140 --KVSGGLK------LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI---- 187
Query: 152 SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL 211
S +D C V+L+ L ++ N+ +P+ L + ++L+ LD+S N+L+G S + +
Sbjct: 188 SGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTC 243
Query: 212 TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLL 271
T +++L +S N F PI PL L+ N+ EI L+ L L L
Sbjct: 244 TELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGEIPDF--LSGACDTLTGLDL 298
Query: 272 SSSYGDGFIFPKF------------------------LYHQHDLEFVDLSHIKMNGEFPT 307
S ++ G + P F L L+ +DLS + +GE P
Sbjct: 299 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 308 WLLENNAKLETLFLINDSIGGPF--RLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365
L +A L TL L +++ GP L +P L+ L + NN F G +P + + L
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC-SEL 417
Query: 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQ 425
S ++S N L G+IPSS G++ L+ L L N L GEIP+ L
Sbjct: 418 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL------------------ 459
Query: 426 GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR 485
M+ + L+ L+L+ N GEIP LS C++L + L+NN L+G+IP+W+G L
Sbjct: 460 --MYVKT-----LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 512
Query: 486 LQYIIMPNNHLEGPIPVEF 504
L + + NN G IP E
Sbjct: 513 LAILKLSNNSFSGNIPAEL 531
Score = 122 bits (305), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 122/447 (27%), Positives = 206/447 (46%), Gaps = 45/447 (10%)
Query: 160 CSLVHLQELRMADNDLRGSLPW--CLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
CS L L ++ N L G + L + + L+ L+VS N L S + L S+E+L
Sbjct: 95 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 218 ILSDNHFQIPISLEPLFNHS--RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSY 275
LS N + + + LK N+++ ++ S + ++ S+++
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS----SNNF 209
Query: 276 GDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIH 335
G FL L+ +D+S K++G+F + + +L+ L + ++ GP +P
Sbjct: 210 STGI---PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPL 263
Query: 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFG----------- 384
P + L++L ++ N F G +P + +L ++S N +G++P FG
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 385 --------------NMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMF- 429
M+ L++LDLS N +GE+PE L G +
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 430 --SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQ 487
+N T L+ L L+ N F G+IP +LS CS L L+L+ N LSG IP LG+L++L+
Sbjct: 384 NLCQNPKNT-LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 488 YIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547
+ + N LEG IP E N+++G IPS SN + + LS N+L G
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTG 501
Query: 548 KMPHQLVELKTLEVFSVAYNNLSGEIP 574
++P + L+ L + ++ N+ SG IP
Sbjct: 502 EIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 188/425 (44%), Gaps = 23/425 (5%)
Query: 182 CLANMTSLRILDVSFNQLTGSISS-SPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLK 240
C A++TSL D+S N L+G +++ + L + ++ L +S N P + + L+
Sbjct: 95 CSASLTSL---DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 151
Query: 241 IFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIK 300
+ N ++ L+ +L L +S + G + + +LEF+D+S
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNN 208
Query: 301 MNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD 360
+ P L + + L+ L + + + G F I L+ L++S+N F G +P
Sbjct: 209 FSTGIP--FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP-- 264
Query: 361 ILPSLFSFNISTNALHGSIPSSF-GNMKFLQILDLSNNHLTGEIPEYLAVGCVXXXXXXX 419
L SL +++ N G IP G L LDLS NH G +P + +
Sbjct: 265 -LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 420 XXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLSGKIPR 478
+ LK L L N F GE+P+SL+ S SL L L++N+ SG I
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI-- 381
Query: 479 WLGNLTR-----LQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLK 533
L NL + LQ + + NN G IP S N +SG IPS+ +L
Sbjct: 382 -LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-IPSSLGSLS 439
Query: 534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIF 593
++ L L N L G++P +L+ +KTLE + +N+L+GEIP + N S N
Sbjct: 440 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Query: 594 LCGLP 598
+P
Sbjct: 500 TGEIP 504
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 133/512 (25%), Positives = 202/512 (39%), Gaps = 140/512 (27%)
Query: 121 ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH-----LQELRMADNDL 175
L+ SF + GE SL LS S L +S+ L +L LQEL + +N
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFN 235
G +P L+N + L L +SFN L+G+I SS L L+ + L L N + I E ++
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 236 HSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVD 295
+ L+ D N+L EI P L + +L ++
Sbjct: 463 KT-LETLILDFNDLTGEI----------------------------PSGLSNCTNLNWIS 493
Query: 296 LSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMP 355
LS+ ++ GE P W+ +LE L + L +SNN+F G++P
Sbjct: 494 LSNNRLTGEIPKWI----GRLENLAI---------------------LKLSNNSFSGNIP 528
Query: 356 VEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLA-VGCVXX 414
E+GD SL +++TN +G+IP++ F Q ++ N + G+ Y+ G
Sbjct: 529 AELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 415 XXXXXXXXXXQG-------HMFSRN-FNLTN----------------LKWLLLEGNRFVG 450
QG + +RN N+T+ + +L + N G
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXX 510
IP+ + L L L +N +SG IP +G+L L + + +N L+G
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG------------ 691
Query: 511 XXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570
IP S L + +DLS N NLS
Sbjct: 692 -------------RIPQAMSALTMLTEIDLSNN------------------------NLS 714
Query: 571 GEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602
G IPE QF TF + + N LCG PLP C
Sbjct: 715 GPIPEM-GQFETFPPAKFLNNPGLCGYPLPRC 745
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/256 (31%), Positives = 114/256 (44%), Gaps = 31/256 (12%)
Query: 348 NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYL 407
NN G +P I L L I+ + G+IP +K L LD S N L+G +P +
Sbjct: 87 NNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 408 AVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL-EGLY 466
+ +L NL + +GNR G IP S S L +
Sbjct: 146 S-------------------------SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 467 LNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIP 526
++ N L+GKIP NL L ++ + N LEG V F + N+++ L
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 527 STFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 586
S K + LDL N++ G +P L +LK L +V++NNL GEIP+ F+ S
Sbjct: 240 VGLS--KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296
Query: 587 SYEGNIFLCGLPLPIC 602
+Y N LCG PLP C
Sbjct: 297 AYANNKCLCGSPLPAC 312
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 92/228 (40%), Gaps = 11/228 (4%)
Query: 281 FPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN---DSIGGPFRLPIHPH 337
P + L ++ ++H ++G P +L ++++TL ++ +++ G I
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFL----SQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
L + N G +P G S IS N L G IP +F N+ L +DLS N
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207
Query: 398 HLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS 457
L G+ + G + NL L L NR G +PQ L+
Sbjct: 208 MLEGD--ASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 458 KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 505
+ L L ++ N+L G+IP+ GNL R NN P+ C
Sbjct: 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 434 NLTNLKWLLLEG-NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMP 492
NL L +L + G N VG IP +++K + L LY+ + ++SG IP +L + L +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 493 NNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ 552
N L G +P N ISG + S S K S+ +S N+L GK+P
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 553 LVELKTLEVFSVAYNNLSGE 572
L L ++ N L G+
Sbjct: 194 FANLN-LAFVDLSRNMLEGD 212
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 102/244 (41%), Gaps = 40/244 (16%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSI--SSSPLVHLTSIE 215
+ L L L + ++ G++P L+ + +L LD S+N L+G++ S S L +L I
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 216 MLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSY 275
D N ++ I S+ + F + +S +
Sbjct: 156 F----------------------------DGNRISGAIPDSYGSFSKLFT--SMTISRNR 185
Query: 276 GDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRL-PI 334
G I P F +L FVDLS + G+ + L ++ + + L +S+ F L +
Sbjct: 186 LTGKIPPTF--ANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLA--FDLGKV 240
Query: 335 HPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394
+ L LD+ NN G +P + L L S N+S N L G IP GN++ +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 395 SNNH 398
+NN
Sbjct: 299 ANNK 302
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 525 IPSTFSNLKQIESLDLS-YNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF 583
IPS+ +NL + L + N L G +P + +L L + + N+SG IP++ +Q T
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 584 NESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTSYII 637
+ N LP I P + GN + D F TS I
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 15/173 (8%)
Query: 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
+L TLD SYN + T + + NL +T D + + ++ S S +++IS
Sbjct: 126 TLVTLDFSYNALSG---TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 92 YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNS 151
+ G + P+F +L+++F ++ N + G++ + I +
Sbjct: 183 RNRLTGKIP----PTF---ANLNLAFVDLSRN----MLEGDASVLFGSDKNTQKIHLAKN 231
Query: 152 SRILDQGLCSL-VHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSI 203
S D G L +L L + +N + G+LP L + L L+VSFN L G I
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 44/254 (17%)
Query: 10 FGLSGVGIRDGSKLLQSMGSFP---SLNTLDLSYNNFTDIAITTTQELHNFTNLEY---- 62
F L +G+R L +G F +L LD+S N + Q+L+N +LE
Sbjct: 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND 139
Query: 63 -----------------LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFP 105
LTL++ +L S+ S L L + + +N + R F
Sbjct: 140 LVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAI-RDYSFK 197
Query: 106 SFKSLEHLHMSFAPI----------ALNTSFLQIIGESMPSLKYLSLSGSI------LGT 149
L+ L +S P LN + L I ++ ++ YL++ + L
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257
Query: 150 NS-SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPL 208
N S I L L+ LQE+++ L P+ + LR+L+VS NQLT ++ S
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVF 316
Query: 209 VHLTSIEMLILSDN 222
+ ++E LIL N
Sbjct: 317 HSVGNLETLILDSN 330
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 114/283 (40%), Gaps = 41/283 (14%)
Query: 147 LGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
LG N + L+Q S HL+EL + +N + P N+ +LR L + N+L I
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPL 97
Query: 206 SPLVHLTSIEMLILSDNHFQIPISLEPLFNH-SRLKIFYADNNELNAEITQSHSLTAPNF 264
L+++ L +S+N +I I L+ +F LK +N+L + SH +
Sbjct: 98 GVFTGLSNLTKLDISEN--KIVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLN 152
Query: 265 QLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNG---------------EFPTWL 309
L +L L I + L H H L + L H+ +N E W
Sbjct: 153 SLEQLTLEKCNLTS-IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 310 LENNAKLETLFLIN---------DSIGGPFRLPIHPHRRLRFLDVSNN---NFQGHMPVE 357
+ L+ +N + P+ L + LRFL++S N +G M E
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFLNLSYNPISTIEGSMLHE 270
Query: 358 IGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT 400
L L + L P +F + +L++L++S N LT
Sbjct: 271 ----LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
S+ +++L + F+D++ +T FT ++ LD ++ H++ L S SLK L ++
Sbjct: 254 SVESINLQKHRFSDLSSST---FRCFTRVQ--ELDLTAAHLNGLPSGIEGMNSLKKLVLN 308
Query: 92 Y------CEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGS 145
C++N FPS + L ++ + + L T L E + +L+ L LS S
Sbjct: 309 ANSFDQLCQINAA----SFPSLRDL-YIKGNMRKLDLGTRCL----EKLENLQKLDLSHS 359
Query: 146 ILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISS 205
+ +S + L +L HLQ L ++ N+ G L +LDV+F L
Sbjct: 360 DI--EASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPH 417
Query: 206 SPLVHLTSIEMLILS 220
SP +L + +L LS
Sbjct: 418 SPFQNLHLLRVLNLS 432
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 31/219 (14%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +LN L+LS N +DI+ L T+L+ L+ SS ++ L+ +A+L +L+
Sbjct: 125 LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSF--SSNQVTDLKPLANL-TTLE 176
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES-MPSLKYLSLSGS 145
L IS +V+ + +LE L IA N I + +L LSL+G
Sbjct: 177 RLDISSNKVSDI---SVLAKLTNLESL------IATNNQISDITPLGILTNLDELSLNG- 226
Query: 146 ILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+++ D G L SL +L +L +A+N + P L+ +T L L + NQ++ +
Sbjct: 227 ------NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---N 275
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
SPL LT++ L L++N + + L N + L +++
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 314
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 43/247 (17%)
Query: 3 GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIA-----------ITTT 51
GL L+ S + D L+ + + +L LD+S N +DI+ I T
Sbjct: 149 GLTSLQQLSFSSNQVTD----LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 52 QELHNFTNLEYLT-LDESSLHISLLQSIASL--FPSLKNLSISYCEVNGVLRGQGFPSFK 108
++ + T L LT LDE SL+ + L+ I +L +L +L ++ +++ + G
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 109 SLE---HLHMSFAPIA---------LNTSFLQIIG--ESMPSLKYLSLSGSILGTNSSRI 154
L+ + + +P+A LN + L+ I ++ +L YL+L + N S I
Sbjct: 265 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN----NISDI 320
Query: 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI 214
+ SL LQ L +N + S LAN+T++ L NQ++ +PL +LT I
Sbjct: 321 --SPVSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRI 373
Query: 215 EMLILSD 221
L L+D
Sbjct: 374 TQLGLND 380
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 34/225 (15%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +L L L N TDI L N TNL L L SS IS + +++ L SL+
Sbjct: 103 LANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRLEL--SSNTISDISALSGLT-SLQ 154
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSI 146
LS S +V + + + +LE L +S ++ + L L+ S+
Sbjct: 155 QLSFSSNQVTDL---KPLANLTTLERLDISSNKVS-----------DISVLAKLTNLESL 200
Query: 147 LGTNS--SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+ TN+ S I G+ L +L EL + N L+ LA++T+L LD++ NQ++ +
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---N 253
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
+PL LT + L L N ++ PL + L + N+L
Sbjct: 254 LAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 295
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 31/219 (14%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +LN L+LS N +DI+ L T+L+ L+ SS ++ L+ +A+L +L+
Sbjct: 125 LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSF--SSNQVTDLKPLANLT-TLE 176
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES-MPSLKYLSLSGS 145
L IS +V+ + +LE L IA N I + +L LSL+G
Sbjct: 177 RLDISSNKVSDI---SVLAKLTNLESL------IATNNQISDITPLGILTNLDELSLNG- 226
Query: 146 ILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+++ D G L SL +L +L +A+N + P L+ +T L L + NQ++ +
Sbjct: 227 ------NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---N 275
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
SPL LT++ L L++N + + L N + L +++
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 314
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 114/247 (46%), Gaps = 43/247 (17%)
Query: 3 GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIA-----------ITTT 51
GL L+ S + D L+ + + +L LD+S N +DI+ I T
Sbjct: 149 GLTSLQQLSFSSNQVTD----LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 52 QELHNFTNLEYLT-LDESSLHISLLQSIASL--FPSLKNLSISYCEVNGVLRGQGFPSFK 108
++ + T L LT LDE SL+ + L+ I +L +L +L ++ +++ + G
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 109 SLE---HLHMSFAPIA---------LNTSFLQIIG--ESMPSLKYLSLSGSILGTNSSRI 154
L+ + + +P+A LN + L+ I ++ +L YL+L + N S I
Sbjct: 265 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN----NISDI 320
Query: 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI 214
+ SL LQ L ++N + S LAN+T++ L NQ++ +PL +LT I
Sbjct: 321 --SPVSSLTKLQRLFFSNN--KVSDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRI 373
Query: 215 EMLILSD 221
L L+D
Sbjct: 374 TQLGLND 380
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 34/225 (15%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +L L L N TDI L N TNL L L SS IS + +++ L SL+
Sbjct: 103 LANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRLEL--SSNTISDISALSGLT-SLQ 154
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSI 146
LS S +V + + + +LE L +S ++ + L L+ S+
Sbjct: 155 QLSFSSNQVTDL---KPLANLTTLERLDISSNKVS-----------DISVLAKLTNLESL 200
Query: 147 LGTNS--SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+ TN+ S I G+ L +L EL + N L+ LA++T+L LD++ NQ++ +
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---N 253
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
+PL LT + L L N ++ PL + L + N+L
Sbjct: 254 LAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 295
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 105/269 (39%), Gaps = 25/269 (9%)
Query: 1 YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNL 60
+ L +L LS G+ QS SL LDLS+N IT + L
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG----VITMSSNFLGLEQL 103
Query: 61 EYLTLDESSLHISLLQSIASLFPSLKNL---SISYCEVNGVLRGQGFPSFKSLEHLHMSF 117
E+L S+L S S+F SL+NL IS+ G F SLE L M
Sbjct: 104 EHLDFQHSNLK---QMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKM-- 157
Query: 118 APIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG 177
A + +FL I + +L +L LS L S + SL LQ L M+ N+
Sbjct: 158 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMSHNNFFS 213
Query: 178 SLPWCLANMTSLRILDVSFNQLTGSISSSPLVHL-TSIEMLILSDNHFQIPISLEPLFNH 236
+ + SL++LD S N + S L H +S+ L L+ N F H
Sbjct: 214 LDTFPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFACTC------EH 266
Query: 237 SRLKIFYADNNELNAEITQSHSLTAPNFQ 265
+ D +L E+ + T + Q
Sbjct: 267 QSFLQWIKDQRQLLVEVERMECATPSDKQ 295
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568
N+ +P F+ L+ + LDLS +L P L +L+V ++++NN
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 31/219 (14%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +LN L+LS N +DI+ L T+L+ L SS ++ L+ +A+L +L+
Sbjct: 125 LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLNF--SSNQVTDLKPLANL-TTLE 176
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES-MPSLKYLSLSGS 145
L IS +V+ + +LE L IA N I + +L LSL+G
Sbjct: 177 RLDISSNKVSDI---SVLAKLTNLESL------IATNNQISDITPLGILTNLDELSLNG- 226
Query: 146 ILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+++ D G L SL +L +L +A+N + P L+ +T L L + NQ++ +
Sbjct: 227 ------NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---N 275
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
SPL LT++ L L++N + + L N + L +++
Sbjct: 276 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 314
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 113/247 (45%), Gaps = 43/247 (17%)
Query: 3 GLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIA-----------ITTT 51
GL L+ S + D L+ + + +L LD+S N +DI+ I T
Sbjct: 149 GLTSLQQLNFSSNQVTD----LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATN 204
Query: 52 QELHNFTNLEYLT-LDESSLHISLLQSIASL--FPSLKNLSISYCEVNGVLRGQGFPSFK 108
++ + T L LT LDE SL+ + L+ I +L +L +L ++ +++ + G
Sbjct: 205 NQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLT 264
Query: 109 SLE---HLHMSFAPIA---------LNTSFLQIIG--ESMPSLKYLSLSGSILGTNSSRI 154
L+ + + +P+A LN + L+ I ++ +L YL+L + N S I
Sbjct: 265 ELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN----NISDI 320
Query: 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSI 214
+ SL LQ L +N + S LAN+T++ L NQ++ +PL +LT I
Sbjct: 321 --SPVSSLTKLQRLFFYNN--KVSDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRI 373
Query: 215 EMLILSD 221
L L+D
Sbjct: 374 TQLGLND 380
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 34/225 (15%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +L L L N TDI L N TNL L L SS IS + +++ L SL+
Sbjct: 103 LANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRLEL--SSNTISDISALSGLT-SLQ 154
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSI 146
L+ S +V + + + +LE L +S ++ + L L+ S+
Sbjct: 155 QLNFSSNQVTDL---KPLANLTTLERLDISSNKVS-----------DISVLAKLTNLESL 200
Query: 147 LGTNS--SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+ TN+ S I G+ L +L EL + N L+ LA++T+L LD++ NQ++ +
Sbjct: 201 IATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---N 253
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
+PL LT + L L N ++ PL + L + N+L
Sbjct: 254 LAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 295
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 24/273 (8%)
Query: 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
S+ +L+L + F+DI+ TT Q FT L+ LD ++ H+ L S LK L +S
Sbjct: 252 SVESLNLQEHRFSDISSTTFQ---CFTQLQ--ELDLTATHLKGLPSGMKGLNLLKKLVLS 306
Query: 92 YCEVNGVLRGQGFPSFKSLEHLHM--SFAPIALNTSFLQIIGESMPSLKYLSLSGSILGT 149
+ + + +F SL HL++ + + L L+ +G +L+ L LS + +
Sbjct: 307 VNHFDQLCQISA-ANFPSLTHLYIRGNVKKLHLGVGCLEKLG----NLQTLDLSHNDI-- 359
Query: 150 NSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLV 209
+S L +L HLQ L ++ N+ G L +LD++F +L + SP
Sbjct: 360 EASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQ 419
Query: 210 HLTSIEMLILS----DNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 265
+L +++L L+ D Q ++ P+ H LK N+ + IT+++ L
Sbjct: 420 NLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLK----GNHFQDGTITKTNLLQTVG-S 474
Query: 266 LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSH 298
L L+LSS G I + + + VDLSH
Sbjct: 475 LEVLILSSC-GLLSIDQQAFHSLGKMSHVDLSH 506
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
FP L+ L +S CE+ + G +++SL HL S L + G + SL +
Sbjct: 53 FPELQVLDLSRCEIQTIEDG----AYQSLSHL-----------STLILTGNPIQSLALGA 97
Query: 142 LSG-------SILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILD 193
SG L TN + + + + L L+EL +A N ++ LP +N+T+L LD
Sbjct: 98 FSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 194 VSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPIS-LEP-LFNHSRLKIFYADNNELNA 251
+S N++ SI + L L + +L LS + P++ ++P F RLK D N+L +
Sbjct: 158 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 15/154 (9%)
Query: 77 SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM 134
S+A+L P L L++ CE+ + P +L+ H + L +G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-------LGQTL 99
Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194
P+L L +S + L + + L L LQEL + N+L+ P L L L +
Sbjct: 100 PALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 195 SFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
+ NQLT + + L L +++ L+L +N + IP
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 15/154 (9%)
Query: 77 SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM 134
S+A+L P L L++ CE+ + P +L+ H + L +G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-------LGQTL 99
Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194
P+L L +S + L + + L L LQEL + N+L+ P L L L +
Sbjct: 100 PALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 195 SFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
+ NQLT + + L L +++ L+L +N + IP
Sbjct: 156 ANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 95/238 (39%), Gaps = 25/238 (10%)
Query: 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNL--- 88
SL LDLS+N IT + LE+L S+L S S+F SL+NL
Sbjct: 398 SLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLK---QMSEFSVFLSLRNLIYL 450
Query: 89 SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILG 148
IS+ G F SLE L M A + +FL I + +L +L LS L
Sbjct: 451 DISHTHTRVAFNGI-FNGLSSLEVLKM--AGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507
Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPL 208
S + SL LQ L M+ N+ + + SL++LD S N + S L
Sbjct: 508 QLSPTAFN----SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS-KKQEL 562
Query: 209 VHL-TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 265
H +S+ L L+ N F H + D +L E+ + T + Q
Sbjct: 563 QHFPSSLAFLNLTQNDFACTCE------HQSFLQWIKDQRQLLVEVERMECATPSDKQ 614
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 23/126 (18%)
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
FP L+ L +S CE+ + G +++SL HL S L + G + SL +
Sbjct: 75 FPELQVLDLSRCEIQTIEDG----AYQSLSHL-----------STLILTGNPIQSLALGA 119
Query: 142 LSG-------SILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILD 193
SG + TN + + + + L L+EL +A N ++ LP +N+T+L LD
Sbjct: 120 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 179
Query: 194 VSFNQL 199
+S N++
Sbjct: 180 LSSNKI 185
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568
N+ +P F+ L+ + LDLS +L P L +L+V ++++NN
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 529
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 104/266 (39%), Gaps = 25/266 (9%)
Query: 4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYL 63
L L+ LS G+ QS SL LDLS+N IT + LE+L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG----VITMSSNFLGLEQLEHL 401
Query: 64 TLDESSLHISLLQSIASLFPSLKNL---SISYCEVNGVLRGQGFPSFKSLEHLHMSFAPI 120
S+L S S+F SL+NL IS+ G F SLE L M A
Sbjct: 402 DFQHSNLK---QMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKM--AGN 455
Query: 121 ALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLP 180
+ +FL I + +L +L LS L S + SL LQ L M+ N+
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMSHNNFFSLDT 511
Query: 181 WCLANMTSLRILDVSFNQLTGSISSSPLVHL-TSIEMLILSDNHFQIPISLEPLFNHSRL 239
+ + SL++LD S N + S L H +S+ L L+ N F H
Sbjct: 512 FPYKCLNSLQVLDYSLNHIMTS-KKQELQHFPSSLAFLNLTQNDFACTCE------HQSF 564
Query: 240 KIFYADNNELNAEITQSHSLTAPNFQ 265
+ D +L E+ + T + Q
Sbjct: 565 LQWIKDQRQLLVEVERMECATPSDKQ 590
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 23/126 (18%)
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
FP L+ L +S CE+ + G +++SL HL S L + G + SL +
Sbjct: 51 FPELQVLDLSRCEIQTIEDG----AYQSLSHL-----------STLILTGNPIQSLALGA 95
Query: 142 LSG-------SILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILD 193
SG + TN + + + + L L+EL +A N ++ LP +N+T+L LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 194 VSFNQL 199
+S N++
Sbjct: 156 LSSNKI 161
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568
N+ +P F+ L+ + LDLS +L P L +L+V ++++NN
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 66 DESSLHIS--LLQ--SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAP 119
D + LH+S LL S+A+L P L L++ CE+ + P +L+ H
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS 91
Query: 120 IALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL 179
+ L +G+++P+L L +S + L + + L L LQEL + N+L+
Sbjct: 92 LPL-------LGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
P L L L ++ NQLT + + L L +++ L+L +N + IP
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
FP L+ L +S CE+ + G +++SL HL S L + G + SL +
Sbjct: 51 FPELQVLDLSRCEIQTIEDG----AYQSLSHL-----------STLILTGNPIQSLALGA 95
Query: 142 LSG-------SILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILD 193
SG + TN + + + + L L+EL +A N ++ LP +N+T+L LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 194 VSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPIS-LEP-LFNHSRLKIFYADNNELNA 251
+S N++ SI + L L + +L LS + P++ ++P F RLK D N+L +
Sbjct: 156 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
FP L+ L +S CE+ + G +++SL HL S L + G + SL +
Sbjct: 52 FPELQVLDLSRCEIQTIEDG----AYQSLSHL-----------STLILTGNPIQSLALGA 96
Query: 142 LSG-------SILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILD 193
SG + TN + + + + L L+EL +A N ++ LP +N+T+L LD
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 194 VSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPIS-LEP-LFNHSRLKIFYADNNELNA 251
+S N++ SI + L L + +L LS + P++ ++P F RLK D N+L +
Sbjct: 157 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 66 DESSLHIS--LLQ--SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAP 119
D + LH+S LL S+A+L P L L++ CE+ + P +L+ H
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS 91
Query: 120 IALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL 179
+ L +G+++P+L L +S + L + + L L LQEL + N+L+
Sbjct: 92 LPL-------LGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
P L L L ++ NQLT + + L L +++ L+L +N + IP
Sbjct: 141 PGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
FP L+ L +S CE+ + G +++SL HL S L + G + SL +
Sbjct: 52 FPELQVLDLSRCEIQTIEDG----AYQSLSHL-----------STLILTGNPIQSLALGA 96
Query: 142 LSG-------SILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILD 193
SG + TN + + + + L L+EL +A N ++ LP +N+T+L LD
Sbjct: 97 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 156
Query: 194 VSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPIS-LEP-LFNHSRLKIFYADNNELNA 251
+S N++ SI + L L + +L LS + P++ ++P F RLK D N+L +
Sbjct: 157 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 215
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 99/207 (47%), Gaps = 18/207 (8%)
Query: 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSIS 91
S+ +++L + F +I+ T H F+ L+ LD ++ H+S L S +LK L +S
Sbjct: 255 SVESINLQKHYFFNISSNT---FHCFSGLQ--ELDLTATHLSELPSGLVGLSTLKKLVLS 309
Query: 92 YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQI---IGESMPSLKYLSLSGSILG 148
+ + + +F SL HL I NT L++ E++ +L+ L LS +
Sbjct: 310 ANKFENLCQISA-SNFPSLTHL-----SIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363
Query: 149 TNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPL 208
T S + L +L HLQ L ++ N+ L +LD++F +L + SP
Sbjct: 364 T--SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421
Query: 209 VHLTSIEMLILSDNHFQIPISLEPLFN 235
+L +++L LS H + IS E LF+
Sbjct: 422 QNLHLLKVLNLS--HSLLDISSEQLFD 446
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 26/180 (14%)
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
FP L+ L +S CE+ + G +++SL HL S L + G + SL +
Sbjct: 53 FPELQVLDLSRCEIQTIEDG----AYQSLSHL-----------STLILTGNPIQSLALGA 97
Query: 142 LSG-------SILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILD 193
SG + TN + + + + L L+EL +A N ++ LP +N+T+L LD
Sbjct: 98 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 157
Query: 194 VSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPIS-LEP-LFNHSRLKIFYADNNELNA 251
+S N++ SI + L L + +L LS + P++ ++P F RLK D N+L +
Sbjct: 158 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 216
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 32/219 (14%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +LN L+LS N +DI+ L T+L+ L+ ++ L+ +A+L +L+
Sbjct: 130 LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSFGN---QVTDLKPLANLT-TLE 180
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES-MPSLKYLSLSGS 145
L IS +V+ + +LE L IA N I + +L LSL+G
Sbjct: 181 RLDISSNKVSDI---SVLAKLTNLESL------IATNNQISDITPLGILTNLDELSLNG- 230
Query: 146 ILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+++ D G L SL +L +L +A+N + P L+ +T L L + NQ++ +
Sbjct: 231 ------NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---N 279
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
SPL LT++ L L++N + + L N + L +++
Sbjct: 280 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 318
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 39/226 (17%)
Query: 24 LQSMGSFPSLNTLDLSYNNFTDIA-----------ITTTQELHNFTNLEYLT-LDESSLH 71
L+ + + +L LD+S N +DI+ I T ++ + T L LT LDE SL+
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 229
Query: 72 ISLLQSIASL--FPSLKNLSISYCEVNGVLRGQGFPSFKSLE---HLHMSFAPIA----- 121
+ L+ I +L +L +L ++ +++ + G L+ + + +P+A
Sbjct: 230 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 289
Query: 122 ----LNTSFLQIIG--ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL 175
LN + L+ I ++ +L YL+L + N S I + SL LQ L +N
Sbjct: 290 TNLELNENQLEDISPISNLKNLTYLTLYFN----NISDI--SPVSSLTKLQRLFFYNN-- 341
Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221
+ S LAN+T++ L NQ++ +PL +LT I L L+D
Sbjct: 342 KVSDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLND 384
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 35/225 (15%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +L L L N TDI L N TNL L L SS IS + +++ L SL+
Sbjct: 108 LANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRLEL--SSNTISDISALSGLT-SLQ 159
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSI 146
LS N V + + +LE L +S ++ + L L+ S+
Sbjct: 160 QLSFG----NQVTDLKPLANLTTLERLDISSNKVS-----------DISVLAKLTNLESL 204
Query: 147 LGTNS--SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+ TN+ S I G+ L +L EL + N L+ LA++T+L LD++ NQ++ +
Sbjct: 205 IATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS---N 257
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
+PL LT + L L N ++ PL + L + N+L
Sbjct: 258 LAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 299
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 106/219 (48%), Gaps = 32/219 (14%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +LN L+LS N +DI+ L T+L+ L+ ++ L+ +A+L +L+
Sbjct: 129 LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLSFGN---QVTDLKPLANLT-TLE 179
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES-MPSLKYLSLSGS 145
L IS +V+ + +LE L IA N I + +L LSL+G
Sbjct: 180 RLDISSNKVSDI---SVLAKLTNLESL------IATNNQISDITPLGILTNLDELSLNG- 229
Query: 146 ILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+++ D G L SL +L +L +A+N + P L+ +T L L + NQ++ +
Sbjct: 230 ------NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---N 278
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
SPL LT++ L L++N + + L N + L +++
Sbjct: 279 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 317
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 39/226 (17%)
Query: 24 LQSMGSFPSLNTLDLSYNNFTDIA-----------ITTTQELHNFTNLEYLT-LDESSLH 71
L+ + + +L LD+S N +DI+ I T ++ + T L LT LDE SL+
Sbjct: 169 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 228
Query: 72 ISLLQSIASL--FPSLKNLSISYCEVNGVLRGQGFPSFKSLE---HLHMSFAPIA----- 121
+ L+ I +L +L +L ++ +++ + G L+ + + +P+A
Sbjct: 229 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 288
Query: 122 ----LNTSFLQIIG--ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL 175
LN + L+ I ++ +L YL+L + N S I + SL LQ L A+N
Sbjct: 289 TNLELNENQLEDISPISNLKNLTYLTLYFN----NISDI--SPVSSLTKLQRLFFANN-- 340
Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221
+ S LAN+T++ L NQ++ +PL +LT I L L+D
Sbjct: 341 KVSDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLND 383
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 35/225 (15%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +L L L N TDI L N TNL L L SS IS + +++ L SL+
Sbjct: 107 LANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRLEL--SSNTISDISALSGLT-SLQ 158
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSI 146
LS N V + + +LE L +S ++ + L L+ S+
Sbjct: 159 QLSFG----NQVTDLKPLANLTTLERLDISSNKVS-----------DISVLAKLTNLESL 203
Query: 147 LGTNS--SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+ TN+ S I G+ L +L EL + N L+ LA++T+L LD++ NQ++ +
Sbjct: 204 IATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS---N 256
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
+PL LT + L L N ++ PL + L + N+L
Sbjct: 257 LAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 298
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 162 LVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221
LV+L ELR+ N L+ P ++T L L + +N+L S+ LTS++ L L +
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYN 166
Query: 222 NHFQ-IPISLEPLFNH-SRLKIFYADNNEL 249
N + +P E F+ + LK DNN+L
Sbjct: 167 NQLKRVP---EGAFDKLTELKTLKLDNNQL 193
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 10/144 (6%)
Query: 436 TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495
+ K L L+ N+ ++ + + L LYLN+N L L L+ + + +N
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 496 LEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH---- 551
L+ +P+ D N L P F +L ++ L L YN+L +P
Sbjct: 97 LQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 552 QLVELKTLEVFSVAYNNLSGEIPE 575
+L LK L + YNN +PE
Sbjct: 155 KLTSLKELRL----YNNQLKRVPE 174
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 32/219 (14%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +LN L+LS N +DI+ L T+L+ L ++ L+ +A+L +L+
Sbjct: 125 LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLNFGN---QVTDLKPLANL-TTLE 175
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES-MPSLKYLSLSGS 145
L IS +V+ + +LE L IA N I + +L LSL+G
Sbjct: 176 RLDISSNKVSDI---SVLAKLTNLESL------IATNNQISDITPLGILTNLDELSLNG- 225
Query: 146 ILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+++ D G L SL +L +L +A+N + P L+ +T L L + NQ++ +
Sbjct: 226 ------NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---N 274
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
SPL LT++ L L++N + + L N + L +++
Sbjct: 275 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 313
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 106/226 (46%), Gaps = 39/226 (17%)
Query: 24 LQSMGSFPSLNTLDLSYNNFTDIA-----------ITTTQELHNFTNLEYLT-LDESSLH 71
L+ + + +L LD+S N +DI+ I T ++ + T L LT LDE SL+
Sbjct: 165 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
Query: 72 ISLLQSIASL--FPSLKNLSISYCEVNGVLRGQGFPSFKSLE---HLHMSFAPIA----- 121
+ L+ I +L +L +L ++ +++ + G L+ + + +P+A
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 284
Query: 122 ----LNTSFLQIIG--ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL 175
LN + L+ I ++ +L YL+L + N S I + SL LQ L +N
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLYFN----NISDI--SPVSSLTKLQRLFFYNN-- 336
Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221
+ S LAN+T++ L NQ++ +PL +LT I L L+D
Sbjct: 337 KVSDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLND 379
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 35/225 (15%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +L L L N TDI L N TNL L L SS IS + +++ L SL+
Sbjct: 103 LANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRLEL--SSNTISDISALSGLT-SLQ 154
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSI 146
L+ N V + + +LE L +S ++ + L L+ S+
Sbjct: 155 QLNFG----NQVTDLKPLANLTTLERLDISSNKVS-----------DISVLAKLTNLESL 199
Query: 147 LGTNS--SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+ TN+ S I G+ L +L EL + N L+ LA++T+L LD++ NQ++ +
Sbjct: 200 IATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS---N 252
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
+PL LT + L L N ++ PL + L + N+L
Sbjct: 253 LAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 294
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 32/219 (14%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +LN L+LS N +DI+ L T+L+ L ++ L+ +A+L +L+
Sbjct: 125 LKNLTNLNRLELSSNTISDIS-----ALSGLTSLQQLNFGN---QVTDLKPLANLT-TLE 175
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGES-MPSLKYLSLSGS 145
L IS +V+ + +LE L IA N I + +L LSL+G
Sbjct: 176 RLDISSNKVSDI---SVLAKLTNLESL------IATNNQISDITPLGILTNLDELSLNG- 225
Query: 146 ILGTNSSRILDQG-LCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+++ D G L SL +L +L +A+N + P L+ +T L L + NQ++ +
Sbjct: 226 ------NQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS---N 274
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
SPL LT++ L L++N + + L N + L +++
Sbjct: 275 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF 313
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 39/226 (17%)
Query: 24 LQSMGSFPSLNTLDLSYNNFTDIA-----------ITTTQELHNFTNLEYLT-LDESSLH 71
L+ + + +L LD+S N +DI+ I T ++ + T L LT LDE SL+
Sbjct: 165 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLN 224
Query: 72 ISLLQSIASL--FPSLKNLSISYCEVNGVLRGQGFPSFKSLE---HLHMSFAPIA----- 121
+ L+ I +L +L +L ++ +++ + G L+ + + +P+A
Sbjct: 225 GNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTAL 284
Query: 122 ----LNTSFLQIIG--ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL 175
LN + L+ I ++ +L YL+L + N S I + SL LQ L ++N
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLYFN----NISDI--SPVSSLTKLQRLFFSNN-- 336
Query: 176 RGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221
+ S LAN+T++ L NQ++ +PL +LT I L L+D
Sbjct: 337 KVSDVSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLND 379
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 35/225 (15%)
Query: 27 MGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86
+ + +L L L N TDI L N TNL L L SS IS + +++ L SL+
Sbjct: 103 LANLTNLTGLTLFNNQITDI-----DPLKNLTNLNRLEL--SSNTISDISALSGLT-SLQ 154
Query: 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSI 146
L+ N V + + +LE L +S ++ + L L+ S+
Sbjct: 155 QLNFG----NQVTDLKPLANLTTLERLDISSNKVS-----------DISVLAKLTNLESL 199
Query: 147 LGTNS--SRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSIS 204
+ TN+ S I G+ L +L EL + N L+ LA++T+L LD++ NQ++ +
Sbjct: 200 IATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS---N 252
Query: 205 SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249
+PL LT + L L N ++ PL + L + N+L
Sbjct: 253 LAPLSGLTKLTELKLGANQIS---NISPLAGLTALTNLELNENQL 294
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 32/216 (14%)
Query: 6 KLKSFGLSGVGIRD-GSKLLQSMGSFPSLNTLDLSYNNFTDIAI-TTTQELHNFT-NLEY 62
+L GL+ +D GS ++ + PSL L L N D + Q L + T ++
Sbjct: 30 RLDDCGLTEEHCKDIGS----ALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQK 85
Query: 63 LTLDESSL---HISLLQSIASLFPSLKNLSIS-----------YCEVNGVLRGQGFPSFK 108
L+L SL +L S P+L+ L +S CE G+L Q
Sbjct: 86 LSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNPLGDAGLRLLCE--GLLDPQCHLEKL 143
Query: 109 SLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLC-SLVHLQE 167
LE+ ++ A S L+ + +LK L++S + +G +R+L QGL S L+
Sbjct: 144 QLEYCRLTAASCEPLASVLR----ATRALKELTVSNNDIGEAGARVLGQGLADSACQLET 199
Query: 168 LRMADNDLRGS----LPWCLANMTSLRILDVSFNQL 199
LR+ + L + L +A+ SLR LD+ N L
Sbjct: 200 LRLENCGLTPANCKDLCGIVASQASLRELDLGSNGL 235
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 17/123 (13%)
Query: 61 EYLTLDESSLHISLLQSIASLF---PSLKNLSISYCE-----VNGVLRGQGFPSFK---- 108
E + LD+ L + I S PSL L + E V+ VL+G P+ K
Sbjct: 27 EVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTNELGDAGVHLVLQGLQSPTCKIQKL 86
Query: 109 SLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCS-LVHLQE 167
SL++ ++ A + S L+ S+P+L+ L LS + LG R+L +GL HL++
Sbjct: 87 SLQNCSLTEAGCGVLPSTLR----SLPTLRELHLSDNPLGDAGLRLLCEGLLDPQCHLEK 142
Query: 168 LRM 170
L++
Sbjct: 143 LQL 145
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 15/154 (9%)
Query: 77 SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM 134
S+A+L P L L++ CE+ + P +L+ H + L +G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPL-------LGQTL 99
Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194
P+L L +S + L + + L L LQEL + N+L+ P L L L +
Sbjct: 100 PALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 195 SFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
+ N LT + + L L +++ L+L +N + IP
Sbjct: 156 ANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 160 CSLVHLQ---------ELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVH 210
C L LQ L ++ N L+ SLP + +L +LDVSFN+LT S+ L
Sbjct: 65 CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 211 LTSIEMLILSDNHFQI--PISLEPLFNHSRLKIFYADNNELNA 251
L ++ L L N + P L P +L + D EL A
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPA 165
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 64/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 66 DESSLHIS--LLQ--SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAP 119
D + LH+S LL S+A+L P L L++ CE+ + P +L+ H
Sbjct: 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQS 91
Query: 120 IALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL 179
+ L +G+++P+L L +S + L + + L L LQEL + N+L+
Sbjct: 92 LPL-------LGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
P L L L ++ N LT + + L L +++ L+L +N + IP
Sbjct: 141 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN+L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 66 DESSLHIS--LLQ--SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAP 119
D + LH+S LL S+A+L P L L++ CE+ + P +L+ H
Sbjct: 33 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQL-- 90
Query: 120 IALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSL 179
L ++G+++P+L L +S + L + + L L LQEL + N+L+
Sbjct: 91 -----QSLPLLGQTLPALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLP 141
Query: 180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
P L L L ++ N LT + + L L +++ L+L +N + IP
Sbjct: 142 PGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 189
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 52 LMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 107
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 108 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 142
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN+L+ L L L +++ N L
Sbjct: 143 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 180
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
LS NH +L L N L++F + LN I +L PN
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 224
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ+ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
LS NH +L L N L++F + LN I +L PN
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 225
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
LS NH +L L N L++F + LN I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 31/212 (14%)
Query: 29 SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNL 88
+ +L LDLSYNN D+ + L +L YL+L+ +++ +S L +L+ L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYL---PSLRYLSLEYNNIQRLSPRSFYGL-SNLRYL 301
Query: 89 SISYCEVNGVLRGQGFPS--------FKSLEHLHM--SFAPIALNTSFLQIIGESMPSLK 138
S+ + P+ K LE+L+M + P + +F ++ SLK
Sbjct: 302 SLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLV-----SLK 356
Query: 139 YLSLSGSILGTNSSRILDQGLCSLVH--LQELRMADNDL----RGSLPWCLANMTSLRIL 192
YLSLS + T+ + ++ SL H L L + N + G+ W + LRIL
Sbjct: 357 YLSLSKTF--TSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSW----LGQLRIL 410
Query: 193 DVSFNQLTGSISSSPLVHLTSIEMLILSDNHF 224
D+ N++ +S L +I + LS N +
Sbjct: 411 DLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKY 442
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 23/126 (18%)
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLS 141
FP L+ L +S CE+ + G +++SL HL S L + G + SL +
Sbjct: 51 FPELQVLDLSRCEIQTIEDG----AYQSLSHL-----------STLILTGNPIQSLALGA 95
Query: 142 LSG-------SILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILD 193
SG + TN + + + + L L+EL +A N ++ LP +N+T+L LD
Sbjct: 96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 194 VSFNQL 199
+S N++
Sbjct: 156 LSSNKI 161
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 100/249 (40%), Gaps = 47/249 (18%)
Query: 75 LQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM 134
L I LF L N+S + R + F +HL + +N F Q +
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL------VNCKFGQFPTLKL 324
Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDL--RGSLPWCLANMTSLRIL 192
SLK L+ + + G S + L L+ L ++ N L +G TSL+ L
Sbjct: 325 KSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 193 DVSFNQLTGSIS-SSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLK------IFYAD 245
D+SFN G I+ SS + L +E L F HS LK +F +
Sbjct: 379 DLSFN---GVITMSSNFLGLEQLEHLD---------------FQHSNLKQMSEFSVFLSL 420
Query: 246 NNELNAEITQSHSLTAPNFQLNRL-------LLSSSYGDGFIFPKFLYHQHDLEFVDLSH 298
N + +I+ +H+ A N N L + +S+ + F+ P +L F+DLS
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQ 479
Query: 299 IKMNGEFPT 307
++ PT
Sbjct: 480 CQLEQLSPT 488
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
LS NH +L L N L++F + LN I +L PN
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 227
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 149 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 203
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
LS NH +L L N L++F + LN I +L PN
Sbjct: 204 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 247
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
LS NH +L L N L++F + LN I +L PN
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQEC--LNKPINHQSNLVVPN 225
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 427 HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL 486
H S LTNL +L+L GN+ K ++L+ L L N L LT L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 487 QYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKL 545
Y+ + +N L+ +P DNN L F L Q++ L L+ N+L
Sbjct: 136 TYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLACLTKLQNL 178
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263
LS NH +L L N L++F + LN I +L PN
Sbjct: 179 YLSKNHISDLRALCGLKNLDVLELFSQE--ALNKPINHQSNLVVPN 222
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 26 SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
S P L L YNN + + LH N+ YL L S S+ S+ASL P +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLF---SHSLHGLFNVRYLNLKRSFTKQSI--SLASL-PKI 320
Query: 86 KNLSISYCEVNGVLRGQGFPSFKSLEHLHM--SFAPIALNTSFLQIIGESMPSLKYLSLS 143
+ S + K LEHL+M + P + F +I +LKYLSLS
Sbjct: 321 DDFSFQW--------------LKCLEHLNMEDNDIPGIKSNMFTGLI-----NLKYLSLS 361
Query: 144 GSILGTNSSRILDQGLCSLVH--LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
S T+ + ++ SL H L L + N + + + L +LD+ N++
Sbjct: 362 NSF--TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419
Query: 202 SISSSPLVHLTSIEMLILSDNHF 224
++ L +I + LS N +
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKY 442
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 500 IPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL 559
+P E S+N IS L +FSN+ Q+ +L LSYN+L P LK+L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 560 EVFSVAYNNLSGEIPE 575
+ S+ N++S +PE
Sbjct: 105 RLLSLHGNDIS-VVPE 119
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 26 SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
S P L L YNN + + LH N+ YL L S S+ S+ASL P +
Sbjct: 272 SFAWLPQLEYFFLEYNNIQHLF---SHSLHGLFNVRYLNLKRSFTKQSI--SLASL-PKI 325
Query: 86 KNLSISYCEVNGVLRGQGFPSFKSLEHLHM--SFAPIALNTSFLQIIGESMPSLKYLSLS 143
+ S + K LEHL+M + P + F +I +LKYLSLS
Sbjct: 326 DDFSFQW--------------LKCLEHLNMEDNDIPGIKSNMFTGLI-----NLKYLSLS 366
Query: 144 GSILGTNSSRILDQGLCSLVH--LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
S T+ + ++ SL H L L + N + + + L +LD+ N++
Sbjct: 367 NSF--TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 424
Query: 202 SISSSPLVHLTSIEMLILSDNHF 224
++ L +I + LS N +
Sbjct: 425 ELTGQEWRGLENIFEIYLSYNKY 447
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 84/203 (41%), Gaps = 31/203 (15%)
Query: 26 SMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85
S P L L YNN + + LH N+ YL L S S+ S+ASL P +
Sbjct: 277 SFAWLPQLEYFFLEYNNIQHLF---SHSLHGLFNVRYLNLKRSFTKQSI--SLASL-PKI 330
Query: 86 KNLSISYCEVNGVLRGQGFPSFKSLEHLHM--SFAPIALNTSFLQIIGESMPSLKYLSLS 143
+ S + K LEHL+M + P + F +I +LKYLSLS
Sbjct: 331 DDFSFQW--------------LKCLEHLNMEDNDIPGIKSNMFTGLI-----NLKYLSLS 371
Query: 144 GSILGTNSSRILDQGLCSLVH--LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTG 201
S T+ + ++ SL H L L + N + + + L +LD+ N++
Sbjct: 372 NSF--TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 429
Query: 202 SISSSPLVHLTSIEMLILSDNHF 224
++ L +I + LS N +
Sbjct: 430 ELTGQEWRGLENIFEIYLSYNKY 452
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 9/94 (9%)
Query: 161 SLVHLQELRMADNDLRGSLP-WCLANMTSLRILDVSFNQLTGSISS--SPLVHLTSIEML 217
SL++L+EL + N L G+LP ++T L +LD+ NQLT S+ LVHL E+
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK--ELF 118
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIFYADNNELNA 251
+ + ++P +E L + + L + D N+L +
Sbjct: 119 MCCNKLTELPRGIERLTHLTHLAL---DQNQLKS 149
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 54/140 (38%), Gaps = 30/140 (21%)
Query: 427 HMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL 486
H S LTNL +L+L GN+ K ++L+ L L N L LT L
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 487 QYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546
Y+ + +N L+ L F L + LDLSYN+L
Sbjct: 136 TYLNLAHNQLQS-------------------------LPKGVFDKLTNLTELDLSYNQLQ 170
Query: 547 GKMPH----QLVELKTLEVF 562
+P +L +LK L ++
Sbjct: 171 S-LPEGVFDKLTQLKDLRLY 189
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT 577
NN+ + ++ K++ L+ YN+L GK+P E+K L ++AYN ++ EIP
Sbjct: 315 NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYNQIT-EIP--- 369
Query: 578 AQFATFNE 585
A F F E
Sbjct: 370 ANFCGFTE 377
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 33 LNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF---PSLKNLS 89
+ +LD+ +D + L + + LD+ L + + I+S P+L L+
Sbjct: 4 IQSLDIQCEELSDA--RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 90 ISYCE-----VNGVLRGQGFPSFK----SLEHLHMSFAPIALNTSFLQIIGESMPSLKYL 140
+ E V+ VL+G PS K SL++ ++ A + +S L+ ++P+L+ L
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR----TLPTLQEL 117
Query: 141 SLSGSILGTNSSRILDQGL----CSLVHLQ 166
LS ++LG ++L +GL C L LQ
Sbjct: 118 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 147
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 33 LNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF---PSLKNLS 89
+ +LD+ +D + L + + LD+ L + + I+S P+L L+
Sbjct: 5 IQSLDIQCEELSDA--RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 90 ISYCE-----VNGVLRGQGFPSFK----SLEHLHMSFAPIALNTSFLQIIGESMPSLKYL 140
+ E V+ VL+G PS K SL++ ++ A + +S L+ ++P+L+ L
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR----TLPTLQEL 118
Query: 141 SLSGSILGTNSSRILDQGL----CSLVHLQ 166
LS ++LG ++L +GL C L LQ
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 88/233 (37%), Gaps = 52/233 (22%)
Query: 39 SYNNFTDIAITTTQELHNF-----TNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYC 93
S +N I T +EL N YL L E+S+ + + F L++L I
Sbjct: 11 SCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDT----FKHLRHLEILQL 66
Query: 94 EVNGVLRGQ-----GFPSFKSLEHLHMSFAPIALNT-SFLQIIGE--------------- 132
N V + + G PS +LE + +L + E
Sbjct: 67 SKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYA 126
Query: 133 --SMPSLKYLSL----------SGSILGTNSSRILDQGLC---------SLVHLQELRMA 171
+PSL+ L L + G + R L+ G+C +LV L+EL ++
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 172 DNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF 224
N L P +TSLR L + Q+ +I + L S+E L LS N+
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 77 SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM 134
S+A+L P L L++ E+ + P +L+ H + L +G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-------LGQTL 99
Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194
P+L L +S + L + + L L LQEL + N+L+ P L L L +
Sbjct: 100 PALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 195 SFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
+ N LT + + L L +++ L+L +N + IP
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN+L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 77 SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM 134
S+A+L P L L++ E+ + P +L+ H + L +G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPL-------LGQTL 99
Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194
P+L L +S + L + + L L LQEL + N+L+ P L L L +
Sbjct: 100 PALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 195 SFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
+ N LT + + L L +++ L+L +N + IP
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN+L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 122/315 (38%), Gaps = 44/315 (13%)
Query: 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG-----EIPEYLAVGCVXXXX 416
LP + ++ N + +F ++ LQ LDL +N LT IP+ G
Sbjct: 337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL 396
Query: 417 XXXXXXXXQGHMFSRN-----------FNLTNLKWLLLEGNRFVG-EIPQSLSKCSSLEG 464
H+ S N + +L+ L+L NRF Q+ S+ SLE
Sbjct: 397 PKINLTANLIHL-SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 465 LYLNNNSLSGKIPRWLG-----NLTRLQYIIMPNNHLEGPIPVEFCXXXXXXXXXXSDNN 519
L+L N L L L+ LQ + + +N+L P F + N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSN- 514
Query: 520 ISGRLIPSTFSNL-KQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA 578
RL + ++L +E LD+S N+L P V L L+ + +N E
Sbjct: 515 ---RLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLD---ITHNKFICE-----C 563
Query: 579 QFATFNESSYEGNIFLCGLPLPI-CISPATMPEASI------GNEQDDNLIDMD-SFFIT 630
+ +TF N+ + G P I C+ P + S+ G ++++ L + S FI
Sbjct: 564 ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIV 623
Query: 631 FTTSYIIVIFGIVIV 645
T + + + I+ V
Sbjct: 624 CTVTLTLFLMTILTV 638
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 528 TFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI 573
F LK ++ L+L+YNK+N L L+V +++Y NL GE+
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY-NLLGEL 329
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 516 SDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVEL--KTLEVFSVAYNNLSGEI 573
S N I + +F L ++S+D S N++ H+L L KTL FS+A N+L +
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190
Query: 574 P-EW 576
+W
Sbjct: 191 SVDW 194
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 15/154 (9%)
Query: 77 SIASLFP--SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESM 134
S+A+L P L L++ E+ + P +L+ H L ++G+++
Sbjct: 47 SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL-------QSLPLLGQTL 99
Query: 135 PSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194
P+L L +S + L + + L L LQEL + N+L+ P L L L +
Sbjct: 100 PALTVLDVSFNRL----TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 195 SFNQLTGSISSSPLVHLTSIEMLILSDNH-FQIP 227
+ N LT + + L L +++ L+L +N + IP
Sbjct: 156 ANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 29/163 (17%)
Query: 334 IHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393
+ P+ RL L++ +++ LP L + ++S N L S+P + L +LD
Sbjct: 51 LMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106
Query: 394 LSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453
+S N LT L +G + L L+ L L+GN P
Sbjct: 107 VSFNRLTS-----LPLGALR--------------------GLGELQELYLKGNELKTLPP 141
Query: 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496
L+ LE L L NN+L+ L L L +++ N L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1K5D|C Chain C, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|F Chain F, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|I Chain I, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|L Chain L, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|C Chain C, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|F Chain F, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|I Chain I, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|L Chain L, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|2CA6|A Chain A, Miras Structure Determination From Hemihedrally Twinned
Crystals
pdb|2CA6|B Chain B, Miras Structure Determination From Hemihedrally Twinned
Crystals
Length = 386
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 23 LLQSMGSFPSLNTLDLSYNNFTDIAITTTQ-ELHNFTNLEYLTLDESSLHISLLQSIASL 81
LL+ + L LDL N FT + + L ++ NL L L++ L ++
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT--SFLQIIGESMPSLKY 139
F L+N+ L+ L + + I L+ + +I E MP L +
Sbjct: 268 FSKLENIG--------------------LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307
Query: 140 LSLSG 144
L L+G
Sbjct: 308 LELNG 312
>pdb|1YRG|A Chain A, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
pdb|1YRG|B Chain B, The Crystal Structure Of Rna1p: A New Fold For A Gtpase-
Activating Protein
Length = 385
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 23/125 (18%)
Query: 23 LLQSMGSFPSLNTLDLSYNNFTDIAITTTQ-ELHNFTNLEYLTLDESSLHISLLQSIASL 81
LL+ + L LDL N FT + + L ++ NL L L++ L ++
Sbjct: 207 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 266
Query: 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT--SFLQIIGESMPSLKY 139
F L+N+ L+ L + + I L+ + +I E MP L +
Sbjct: 267 FSKLENIG--------------------LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306
Query: 140 LSLSG 144
L L+G
Sbjct: 307 LELNG 311
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 29/135 (21%)
Query: 29 SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA-----SLFP 83
++P L +DLSYN I H F ++ L L+IS + +A P
Sbjct: 252 NYPGLVEVDLSYNELEKIMY------HPFVKMQRL----ERLYISNNRLVALNLYGQPIP 301
Query: 84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHL---HMSFAPIALNTSFLQIIGESMPSLKYL 140
+LK L +S+ + V R Q P F LE+L H S + L+T +LK L
Sbjct: 302 TLKVLDLSHNHLLHVERNQ--PQFDRLENLYLDHNSIVTLKLSTHH---------TLKNL 350
Query: 141 SLSGSILGTNSSRIL 155
+LS + NS R L
Sbjct: 351 TLSHNDWDCNSLRAL 365
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 88/233 (37%), Gaps = 52/233 (22%)
Query: 39 SYNNFTDIAITTTQELHNF-----TNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYC 93
S +N I T +EL N YL L E+S+ + + F L++L I
Sbjct: 11 SCSNQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDT----FKHLRHLEILQL 66
Query: 94 EVNGVLRGQ-----GFPSFKSLEHLHMSFAPIALNT-SFLQIIGE--------------- 132
N V + + G PS +LE + +L + E
Sbjct: 67 SKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYA 126
Query: 133 --SMPSLKYLSL----------SGSILGTNSSRILDQGLC---------SLVHLQELRMA 171
+PSL+ L L + G + R L+ G+C +LV L+EL ++
Sbjct: 127 FNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELS 186
Query: 172 DNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF 224
N L P +TSLR L + Q+ +I + L S+E L LS N+
Sbjct: 187 GNRLDLIRPGSFQGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 15/128 (11%)
Query: 29 SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLT-LDESSLHISLLQSIASLFPSLKN 87
++P L +DLSYN I H F ++ L L S+ + L P+LK
Sbjct: 246 NYPGLVEVDLSYNELEKIMY------HPFVKMQRLERLYISNNRLVALNLYGQPIPTLKV 299
Query: 88 LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL 147
L +S+ + V R Q P F LE+L++ + S + + + +LK L+LS +
Sbjct: 300 LDLSHNHLLHVERNQ--PQFDRLENLYLD------HNSIVTLKLSTHHTLKNLTLSHNDW 351
Query: 148 GTNSSRIL 155
NS R L
Sbjct: 352 DCNSLRAL 359
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 3/144 (2%)
Query: 453 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXXXX 512
P + L L+L+ L P L LQY+ + +N L+ F
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 156
Query: 513 XXXSDNNISGRLIPS-TFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571
N IS +P F L ++ L L N++ PH +L L + NNLS
Sbjct: 157 LFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Query: 572 EIPEWTAQFATFNESSYEGNIFLC 595
E A N ++C
Sbjct: 215 LPTEALAPLRALQYLRLNDNPWVC 238
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 434 NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493
+LT LK L + N+ + +I L+ S L L+LNNN L + +G LT L + +
Sbjct: 263 DLTKLKXLNVGSNQ-ISDI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 494 NHLEGPIPV 502
NH+ P+
Sbjct: 321 NHITDIRPL 329
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 3/144 (2%)
Query: 453 PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCXXXXXXX 512
P + L L+L+ L P L LQY+ + +N L+ F
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157
Query: 513 XXXSDNNISGRLIPS-TFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571
N IS +P F L ++ L L N++ PH +L L + NNLS
Sbjct: 158 LFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 572 EIPEWTAQFATFNESSYEGNIFLC 595
E A N ++C
Sbjct: 216 LPTEALAPLRALQYLRLNDNPWVC 239
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 15/112 (13%)
Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
+ + L L L G+ L + S + D+ L L+ELR+ N L+ +T+L+
Sbjct: 104 DHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFY 243
L +S NQL S+ L ++ + L N F+ SR +I Y
Sbjct: 160 LSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQ----------FDCSRCEILY 200
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIF 242
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIF 242
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIF 242
LS NH +L L N L++F
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELF 226
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEML 217
GL L L+ L + +N + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 178
Query: 218 ILSDNHFQIPISLEPLFNHSRLKIF 242
LS NH +L L N L++F
Sbjct: 179 YLSKNHISDLRALAGLKNLDVLELF 203
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 123 NTSFLQIIGESMPS-LKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPW 181
+T F+ ++ PS +L+ + ++ T+S + QG +L LQ L + N L+
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVF-TDS---VFQGCSTLKRLQTLILQRNGLKNFFKV 395
Query: 182 CL--ANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDN 222
L NM+SL LDVS N L SI +L LS N
Sbjct: 396 ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 14/156 (8%)
Query: 36 LDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSL-HISLLQSIASLFPSLKNLSISYCE 94
LD S N TD T + + T LE L L + L +S + + + SL+ L IS
Sbjct: 329 LDFSNNLLTD---TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 95 VNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRI 154
V+ + KSL L+MS + I +T F + P +K L L +N +
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMS-SNILTDTIFRCL----PPRIKVLDL-----HSNKIKS 435
Query: 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLR 190
+ + + L LQEL +A N L+ +TSL+
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 104/250 (41%), Gaps = 42/250 (16%)
Query: 157 QGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEM 216
+ L L L E N+ LP L N + L+I+DV N L P S+E
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPP-----SLEF 177
Query: 217 LILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYG 276
+ +N + L L N L YADNN L P+ L+ L S G
Sbjct: 178 IAAGNNQLE---ELPELQNLPFLTAIYADNNSLKK---------LPDLPLS--LESIVAG 223
Query: 277 DGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHP 336
+ + + L +L F L+ I + L + LE L + ++ + LP
Sbjct: 224 NNIL--EELPELQNLPF--LTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELP--- 276
Query: 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHG--SIPSSFGNMKFLQILDL 394
+ L FLDVS N F G + ++ P+L+ N S+N + +P S L+ L++
Sbjct: 277 -QSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSLCDLPPS------LEELNV 324
Query: 395 SNNHLTGEIP 404
SNN L E+P
Sbjct: 325 SNNKLI-ELP 333
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNN 397
+ L+ L V NNN + + D+ P L +S N L +P N FL+I+D+ NN
Sbjct: 111 QSLKSLLVDNNNLKA-----LSDLPPLLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNN 163
Query: 398 HLTG--EIP---EYLAVG 410
L ++P E++A G
Sbjct: 164 SLKKLPDLPPSLEFIAAG 181
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 92/238 (38%), Gaps = 33/238 (13%)
Query: 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN 349
DL+ ++ IK +G+F +N L TL LIN+ I P +L L +S N
Sbjct: 58 DLQNNKITEIK-DGDF-----KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 350 FQG---HMPV----------EIGDILPSLFS-------FNISTNALH--GSIPSSFGNMK 387
+ MP EI + S+F+ + TN L G +F MK
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 388 FLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNR 447
L + +++ ++T IP+ L L NL L L N
Sbjct: 172 KLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLK---GLNNLAKLGLSFNS 227
Query: 448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 505
SL+ L L+LNNN L K+P L + +Q + + NN++ +FC
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 92/238 (38%), Gaps = 33/238 (13%)
Query: 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN 349
DL+ ++ IK +G+F +N L TL LIN+ I P +L L +S N
Sbjct: 58 DLQNNKITEIK-DGDF-----KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 350 FQG---HMPV----------EIGDILPSLFS-------FNISTNALH--GSIPSSFGNMK 387
+ MP EI + S+F+ + TN L G +F MK
Sbjct: 112 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 388 FLQILDLSNNHLTGEIPEYLAVGCVXXXXXXXXXXXXQGHMFSRNFNLTNLKWLLLEGNR 447
L + +++ ++T IP+ L L NL L L N
Sbjct: 172 KLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLK---GLNNLAKLGLSFNS 227
Query: 448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 505
SL+ L L+LNNN L K+P L + +Q + + NN++ +FC
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 132 ESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRI 191
+ + L L L G+ L + S + D+ L L+ELR+ N L+ +T+L+
Sbjct: 104 DHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 192 LDVSFNQLTGSISSSPLVHLTSIEMLILSDNHF 224
L +S NQL S+ L ++ + L N F
Sbjct: 160 LSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 98/437 (22%), Positives = 166/437 (37%), Gaps = 95/437 (21%)
Query: 75 LQSIASL----FPSLKNLSISYCEVNG---VLRGQGFPSFKSLEHLHMSFAP-IALNT-S 125
L SIA L F L++L E V+R F SL L + + + L T +
Sbjct: 39 LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98
Query: 126 FLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL-A 184
F + + +L +L G++L N + L L+ L + DN+++ P
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFK-------PLTSLEMLVLRDNNIKKIQPASFFL 151
Query: 185 NMTSLRILDVSFNQLTGSISSS---------PLVHLTSIEMLILSDNHFQIPISLEPLFN 235
NM +LD++FN++ L+ L+SI + +++ P F
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FK 210
Query: 236 HSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHD----- 290
++ + N + + ++ L+LS+SY G F + D
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 291 ------LEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLD 344
++ DLS K+ + + + LE L L + I
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEIN----------------K 313
Query: 345 VSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSS-FGNMKFLQILDLSNNHLTGEI 403
+ +N F G L L N+S N L GSI S F N+ L++LDLS NH+
Sbjct: 314 IDDNAFWG---------LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR--- 360
Query: 404 PEYLAVGCVXXXXXXXXXXXXQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSL-SKCSS 461
A+G ++F L NLK L L+ N+ + +P + + +S
Sbjct: 361 ----ALG-------------------DQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTS 396
Query: 462 LEGLYLNNNSLSGKIPR 478
L+ ++L+ N PR
Sbjct: 397 LQKIWLHTNPWDCSCPR 413
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 39 SYNNFTDIAITTTQELHNFT--NLE---YLTLDESSLHI-SLLQSIASLFPSLKNLSISY 92
SYN + T ++ NFT LE T D S I +LL+S+ S F L+ L+++
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308
Query: 93 CEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIG----ESMPSLKYLSLSGSILG 148
E+N + +F L HL + L+ +FL I E++ L+ L LS
Sbjct: 309 NEINKIDDN----AFWGLTHL----LKLNLSQNFLGSIDSRMFENLDKLEVLDLS----- 355
Query: 149 TNSSRIL-DQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLR 190
N R L DQ L +L+EL + N L+ +TSL+
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ 398
>pdb|3NUR|A Chain A, Crystal Structure Of A Putative Amidohydrolase From
Staphylococcus Aureus
Length = 357
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATF----- 583
F N + ++ LSY NG P LV K +E+ A + L+ I ++ +F F
Sbjct: 81 FXNNQDVQIQVLSYG--NGS-PSNLVGQKAIELCQKANDQLANYIAQYPNRFVGFATLPI 137
Query: 584 NESSYEGNIFLCGLPLPICISPATMPEASIGNEQDDNLIDMDSFFITFTTS 634
NE F CI+ A I D +D D + I F T+
Sbjct: 138 NEPEAAAREF------ERCINDLGFKGALIXGRAQDGFLDQDKYDIIFKTA 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,564,527
Number of Sequences: 62578
Number of extensions: 802728
Number of successful extensions: 2373
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 503
length of query: 682
length of database: 14,973,337
effective HSP length: 105
effective length of query: 577
effective length of database: 8,402,647
effective search space: 4848327319
effective search space used: 4848327319
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)