Query 045291
Match_columns 682
No_of_seqs 395 out of 4465
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 11:44:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045291.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045291hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.7E-59 8E-64 543.6 40.3 541 5-598 69-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-55 3.5E-60 513.1 38.4 519 30-598 68-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.3E-44 7.2E-49 352.7 7.4 388 165-612 80-487 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.4E-40 3E-45 327.3 3.0 372 136-571 79-453 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 7.4E-40 1.6E-44 308.5 -13.1 481 6-570 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 1.9E-38 4.1E-43 299.0 -13.0 485 35-594 13-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 1.6E-34 3.5E-39 299.9 -3.9 487 7-567 23-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 5.4E-34 1.2E-38 296.0 -4.1 504 10-588 3-507 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 6.9E-33 1.5E-37 275.1 -2.0 364 163-568 7-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 3.7E-32 8E-37 270.0 -2.8 384 107-563 6-392 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.1E-22 2.4E-27 237.3 25.7 341 154-543 549-903 (1153)
12 KOG4237 Extracellular matrix p 99.9 2.3E-26 4.9E-31 217.5 -4.7 386 136-567 68-498 (498)
13 KOG4237 Extracellular matrix p 99.9 1.1E-25 2.4E-30 212.8 -0.5 257 339-600 68-365 (498)
14 PLN03210 Resistant to P. syrin 99.9 1.2E-20 2.7E-25 220.3 27.9 341 180-569 551-905 (1153)
15 PRK15387 E3 ubiquitin-protein 99.8 1.9E-19 4.1E-24 194.7 17.0 250 281-577 216-465 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 6.1E-19 1.3E-23 190.8 18.1 183 339-553 283-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.8 8.2E-18 1.8E-22 183.5 14.6 246 290-570 179-428 (754)
18 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-18 2.8E-23 177.1 4.7 252 294-546 3-291 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 2.7E-17 5.8E-22 179.5 14.6 248 314-595 178-429 (754)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.4E-18 3.1E-23 176.8 3.2 274 318-593 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.7E-18 3.8E-23 145.3 -5.5 183 385-575 31-217 (264)
22 KOG0617 Ras suppressor protein 99.6 7.5E-18 1.6E-22 141.6 -5.8 179 410-595 31-213 (264)
23 PLN03150 hypothetical protein; 99.3 2.9E-12 6.2E-17 140.0 10.7 114 485-599 419-533 (623)
24 KOG3207 Beta-tubulin folding c 99.3 8E-13 1.7E-17 128.2 -0.2 185 362-546 145-339 (505)
25 KOG0532 Leucine-rich repeat (L 99.2 1.1E-12 2.4E-17 131.2 -4.0 195 362-568 74-271 (722)
26 KOG1909 Ran GTPase-activating 99.2 1.1E-11 2.4E-16 117.1 2.1 138 433-570 154-311 (382)
27 PF14580 LRR_9: Leucine-rich r 99.1 4.5E-11 9.8E-16 106.3 5.4 15 531-545 111-125 (175)
28 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.7E-16 113.9 1.3 130 412-547 284-413 (490)
29 KOG3207 Beta-tubulin folding c 99.1 1.3E-11 2.9E-16 119.8 1.5 212 361-572 119-341 (505)
30 KOG0532 Leucine-rich repeat (L 99.1 4.8E-12 1E-16 126.7 -2.6 196 336-544 73-271 (722)
31 KOG1909 Ran GTPase-activating 99.1 2E-11 4.2E-16 115.5 0.6 246 3-250 28-311 (382)
32 COG4886 Leucine-rich repeat (L 99.1 1.3E-10 2.9E-15 121.6 6.8 198 342-551 97-295 (394)
33 PF14580 LRR_9: Leucine-rich r 99.1 3E-10 6.5E-15 101.1 6.9 132 3-144 17-149 (175)
34 PLN03150 hypothetical protein; 99.1 4.9E-10 1.1E-14 122.6 9.8 114 461-575 419-533 (623)
35 COG4886 Leucine-rich repeat (L 99.0 3.8E-10 8.2E-15 118.2 8.3 178 387-574 116-294 (394)
36 KOG1259 Nischarin, modulator o 99.0 5.4E-11 1.2E-15 109.8 1.1 130 435-571 283-413 (490)
37 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.2E-14 78.6 2.7 57 486-543 3-59 (61)
38 PF13855 LRR_8: Leucine rich r 98.8 2.4E-09 5.2E-14 78.1 2.6 61 508-569 1-61 (61)
39 KOG4658 Apoptotic ATPase [Sign 98.8 6.2E-09 1.3E-13 116.4 6.3 45 282-327 763-807 (889)
40 KOG0531 Protein phosphatase 1, 98.8 5.4E-10 1.2E-14 117.0 -2.3 246 312-574 70-322 (414)
41 KOG4658 Apoptotic ATPase [Sign 98.8 6.2E-09 1.3E-13 116.4 5.3 161 1-177 567-731 (889)
42 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 113.5 -2.0 224 311-548 92-320 (414)
43 KOG2982 Uncharacterized conser 98.6 2.9E-08 6.2E-13 92.1 3.4 86 4-93 70-157 (418)
44 KOG1859 Leucine-rich repeat pr 98.6 3.6E-09 7.8E-14 109.4 -3.9 198 386-596 83-294 (1096)
45 KOG1859 Leucine-rich repeat pr 98.5 2.4E-09 5.1E-14 110.7 -5.6 199 5-225 84-292 (1096)
46 KOG2982 Uncharacterized conser 98.5 2.1E-08 4.6E-13 93.0 1.0 209 339-548 46-264 (418)
47 KOG2120 SCF ubiquitin ligase, 98.5 1.9E-09 4E-14 99.8 -5.8 162 32-198 186-349 (419)
48 KOG2120 SCF ubiquitin ligase, 98.5 7.7E-09 1.7E-13 95.8 -3.8 180 290-471 186-374 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.3 8.1E-08 1.8E-12 88.0 -1.4 105 24-149 23-134 (388)
50 KOG4579 Leucine-rich repeat (L 98.3 7.1E-08 1.5E-12 79.0 -1.6 84 460-546 53-136 (177)
51 KOG4579 Leucine-rich repeat (L 98.2 1.3E-07 2.8E-12 77.5 -1.4 132 461-598 28-163 (177)
52 KOG4341 F-box protein containi 98.1 2.9E-07 6.3E-12 89.7 -1.6 234 6-249 139-384 (483)
53 KOG4341 F-box protein containi 98.1 1.9E-07 4E-12 91.1 -3.7 210 286-495 161-383 (483)
54 COG5238 RNA1 Ran GTPase-activa 97.9 4E-06 8.7E-11 77.1 2.2 240 286-548 27-318 (388)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.2E-05 2.5E-10 53.4 3.7 39 5-46 1-39 (44)
56 KOG3665 ZYG-1-like serine/thre 97.9 3E-06 6.5E-11 92.7 0.7 35 287-321 248-282 (699)
57 KOG1644 U2-associated snRNP A' 97.9 2.5E-05 5.4E-10 69.0 5.9 126 341-471 22-151 (233)
58 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.7E-10 52.6 3.7 38 31-72 1-38 (44)
59 KOG1644 U2-associated snRNP A' 97.8 3.9E-05 8.5E-10 67.8 6.3 110 134-249 41-152 (233)
60 PRK15386 type III secretion pr 97.8 9.3E-05 2E-09 74.6 8.5 55 312-373 50-104 (426)
61 PF13306 LRR_5: Leucine rich r 97.8 7.7E-05 1.7E-09 64.2 7.0 37 381-419 29-65 (129)
62 PF13306 LRR_5: Leucine rich r 97.7 6.6E-05 1.4E-09 64.6 6.4 83 382-468 7-89 (129)
63 PRK15386 type III secretion pr 97.7 0.00013 2.9E-09 73.4 8.3 134 362-519 51-188 (426)
64 KOG3665 ZYG-1-like serine/thre 97.6 5.8E-05 1.3E-09 82.8 5.1 136 5-147 122-262 (699)
65 KOG2739 Leucine-rich acidic nu 97.1 0.00033 7.3E-09 64.9 3.2 64 483-546 64-129 (260)
66 KOG2123 Uncharacterized conser 97.1 3.5E-05 7.7E-10 71.4 -3.8 101 435-539 18-123 (388)
67 KOG1947 Leucine rich repeat pr 97.0 0.00014 3E-09 78.8 -0.2 63 362-424 242-307 (482)
68 KOG2123 Uncharacterized conser 97.0 5.4E-05 1.2E-09 70.2 -2.8 100 411-514 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.6 0.0014 3.1E-08 60.9 3.0 83 4-93 42-127 (260)
70 KOG1947 Leucine rich repeat pr 96.4 0.00073 1.6E-08 73.1 -0.4 114 4-117 187-304 (482)
71 KOG4308 LRR-containing protein 95.8 0.0001 2.3E-09 77.3 -9.9 191 33-225 89-303 (478)
72 PF00560 LRR_1: Leucine Rich R 94.3 0.013 2.9E-07 32.1 0.2 11 7-17 2-12 (22)
73 KOG4308 LRR-containing protein 94.0 0.0011 2.3E-08 69.8 -8.6 182 365-546 89-303 (478)
74 PF00560 LRR_1: Leucine Rich R 93.6 0.033 7.2E-07 30.5 0.9 21 32-56 1-21 (22)
75 PF13504 LRR_7: Leucine rich r 91.9 0.11 2.5E-06 26.2 1.4 14 32-45 2-15 (17)
76 smart00369 LRR_TYP Leucine-ric 89.3 0.38 8.2E-06 27.5 2.3 16 533-548 2-17 (26)
77 smart00370 LRR Leucine-rich re 89.3 0.38 8.2E-06 27.5 2.3 16 533-548 2-17 (26)
78 smart00369 LRR_TYP Leucine-ric 89.0 0.4 8.8E-06 27.4 2.2 21 387-408 2-22 (26)
79 smart00370 LRR Leucine-rich re 89.0 0.4 8.8E-06 27.4 2.2 21 387-408 2-22 (26)
80 TIGR00864 PCC polycystin catio 87.5 0.34 7.4E-06 60.2 2.5 36 539-574 1-36 (2740)
81 KOG3864 Uncharacterized conser 87.5 0.13 2.8E-06 46.2 -0.8 81 461-542 102-185 (221)
82 KOG3864 Uncharacterized conser 84.7 0.28 6.1E-06 44.1 -0.1 36 107-144 150-185 (221)
83 KOG0473 Leucine-rich repeat pr 84.2 0.031 6.6E-07 51.1 -6.3 87 432-521 38-124 (326)
84 KOG0473 Leucine-rich repeat pr 83.5 0.028 6E-07 51.3 -6.9 82 485-570 43-124 (326)
85 PF13516 LRR_6: Leucine Rich r 82.1 0.56 1.2E-05 26.1 0.5 14 31-44 2-15 (24)
86 smart00365 LRR_SD22 Leucine-ri 81.7 1.3 2.8E-05 25.4 1.8 16 31-46 2-17 (26)
87 KOG4242 Predicted myosin-I-bin 75.3 22 0.00048 36.8 9.5 17 30-46 164-180 (553)
88 KOG4242 Predicted myosin-I-bin 74.3 20 0.00043 37.1 8.9 108 134-249 164-280 (553)
89 TIGR00864 PCC polycystin catio 70.4 2 4.4E-05 53.9 1.3 54 563-616 1-73 (2740)
90 smart00368 LRR_RI Leucine rich 69.2 4.2 9.2E-05 23.7 1.9 15 31-45 2-16 (28)
91 smart00364 LRR_BAC Leucine-ric 54.2 9.5 0.00021 21.8 1.4 16 31-46 2-17 (26)
92 KOG3763 mRNA export factor TAP 47.1 15 0.00032 38.9 2.6 87 130-218 213-307 (585)
93 smart00367 LRR_CC Leucine-rich 42.0 20 0.00043 20.3 1.5 11 31-41 2-12 (26)
94 KOG3763 mRNA export factor TAP 41.9 13 0.00029 39.2 1.4 67 28-96 215-284 (585)
95 PF15102 TMEM154: TMEM154 prot 30.0 35 0.00077 29.2 1.8 10 645-654 78-87 (146)
96 PHA03099 epidermal growth fact 28.1 22 0.00049 29.3 0.3 29 633-661 107-135 (139)
97 PF04478 Mid2: Mid2 like cell 27.1 42 0.00091 29.0 1.8 6 629-634 52-57 (154)
98 PF01299 Lamp: Lysosome-associ 23.7 77 0.0017 31.6 3.3 10 645-654 291-300 (306)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.7e-59 Score=543.63 Aligned_cols=541 Identities=30% Similarity=0.493 Sum_probs=458.5
Q ss_pred CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCcccc-CCCCCCCEEeCCCCCCCcchhHHHhhccC
Q 045291 5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL-HNFTNLEYLTLDESSLHISLLQSIASLFP 83 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 83 (682)
.+++.|+|+++++ .+.++..+..+++|++|+|++|++.+.. |..+ .++++|++|++++|.+++..|. ..+..
T Consensus 69 ~~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~~~~~i---p~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~ 141 (968)
T PLN00113 69 SRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQLSGPI---PDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPN 141 (968)
T ss_pred CcEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCccCCcC---ChHHhccCCCCCEEECcCCccccccCc--cccCC
Confidence 4678888888887 5667777888888888888888876431 4443 3788888888888887766554 34677
Q ss_pred cceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCC-CCCCCCcccccccCC
Q 045291 84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL-GTNSSRILDQGLCSL 162 (682)
Q Consensus 84 L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l-~~~~~~i~~~~l~~l 162 (682)
|+++++.+|...+.+|.. ++.+++|++|++++ +.+.+..|..+.. +++|++|++++|.+ +. +|. .++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~--n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~----~p~-~l~~l 211 (968)
T PLN00113 142 LETLDLSNNMLSGEIPND--IGSFSSLKVLDLGG--NVLVGKIPNSLTN-LTSLEFLTLASNQLVGQ----IPR-ELGQM 211 (968)
T ss_pred CCEEECcCCcccccCChH--HhcCCCCCEEECcc--CcccccCChhhhh-CcCCCeeeccCCCCcCc----CCh-HHcCc
Confidence 888888877776666654 77788888888887 5555667777766 88888888888877 33 454 77788
Q ss_pred CCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291 163 VHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242 (682)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 242 (682)
++|++|++++|.+.+..|..++++++|++|++++|.+++.+ |..+..+++|+.|++++|.+++..+. .+..+++|+.|
T Consensus 212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L 289 (968)
T PLN00113 212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISL 289 (968)
T ss_pred CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc-ChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEE
Confidence 88888888888888778888888888888888888877666 66778888888888888887755543 36677788888
Q ss_pred EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcC
Q 045291 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLI 322 (682)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~ 322 (682)
++++|.+. +.+|.++..+++|+.|++++|.+.+..|.. +..+++|+.|+++
T Consensus 290 ~Ls~n~l~----------------------------~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~ 340 (968)
T PLN00113 290 DLSDNSLS----------------------------GEIPELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLW 340 (968)
T ss_pred ECcCCeec----------------------------cCCChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECc
Confidence 88777654 346778889999999999999999888887 6789999999999
Q ss_pred CCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCc
Q 045291 323 NDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE 402 (682)
Q Consensus 323 ~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 402 (682)
+|.+.+..+..+..+++|+.|++++|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|++.+.
T Consensus 341 ~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 99999888888889999999999999999888888766 88999999999999999999999999999999999999988
Q ss_pred CchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcC
Q 045291 403 IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 482 (682)
Q Consensus 403 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 482 (682)
+|..+. .+++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..|..+ ..++|+.|++++|++.+..|..+..
T Consensus 420 ~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 420 LPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred CChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence 877654 79999999999999999888888889999999999999998888765 4689999999999999999999999
Q ss_pred CCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEE
Q 045291 483 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVF 562 (682)
Q Consensus 483 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 562 (682)
+++|++|+|++|.+.+..|..+..+++|+.|+|++|.+++ .+|..+..+++|+.|++++|++++.+|..+..+++|+.+
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG-QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccc-cCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEE
Confidence 9999999999999999999999999999999999999997 789999999999999999999999999999999999999
Q ss_pred EccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 563 SVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 563 ~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
++++|++.+.+|. ...+..+....+.+|+..|+.+
T Consensus 577 ~ls~N~l~~~~p~-~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 577 NISHNHLHGSLPS-TGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred eccCCcceeeCCC-cchhcccChhhhcCCccccCCc
Confidence 9999999999998 5778888888899999999743
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-55 Score=513.11 Aligned_cols=519 Identities=29% Similarity=0.420 Sum_probs=472.3
Q ss_pred CCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHh-hccCcceeeccCccccCcccCCCCCCCCC
Q 045291 30 FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIA-SLFPSLKNLSISYCEVNGVLRGQGFPSFK 108 (682)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~-~l~~L~~l~~~~~~~~~~~~~~~~~~~l~ 108 (682)
..+++.|||++|++.+.. ++++..+++|++|+|++|.+++.+|..+. ++..|+++++.+|+..+.+|. +.++
T Consensus 68 ~~~v~~L~L~~~~i~~~~---~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~----~~l~ 140 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKI---SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR----GSIP 140 (968)
T ss_pred CCcEEEEEecCCCccccC---ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc----cccC
Confidence 458999999999998864 56899999999999999999988888776 899999999999998877774 4689
Q ss_pred CCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCC-CCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCC
Q 045291 109 SLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSIL-GTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMT 187 (682)
Q Consensus 109 ~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l-~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 187 (682)
+|++|++++ +.+.+..|..+.. +++|++|++++|.+ +. +|. .++++++|++|++++|.+.+.+|..+..++
T Consensus 141 ~L~~L~Ls~--n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~----~p~-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 212 (968)
T PLN00113 141 NLETLDLSN--NMLSGEIPNDIGS-FSSLKVLDLGGNVLVGK----IPN-SLTNLTSLEFLTLASNQLVGQIPRELGQMK 212 (968)
T ss_pred CCCEEECcC--CcccccCChHHhc-CCCCCEEECccCccccc----CCh-hhhhCcCCCeeeccCCCCcCcCChHHcCcC
Confidence 999999999 5566778888887 99999999999998 44 565 899999999999999999999999999999
Q ss_pred CCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCccccc
Q 045291 188 SLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLN 267 (682)
Q Consensus 188 ~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~ 267 (682)
+|++|++++|.+++.+ |..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+
T Consensus 213 ~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~---------------- 274 (968)
T PLN00113 213 SLKWIYLGYNNLSGEI-PYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSG---------------- 274 (968)
T ss_pred CccEEECcCCccCCcC-ChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeec----------------
Confidence 9999999999999777 78899999999999999999876654 48889999999999988753
Q ss_pred ceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccC
Q 045291 268 RLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSN 347 (682)
Q Consensus 268 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 347 (682)
..|..+..+++|+.|++++|.+.+.+|.+ +..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 275 ------------~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 341 (968)
T PLN00113 275 ------------PIPPSIFSLQKLISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341 (968)
T ss_pred ------------cCchhHhhccCcCEEECcCCeeccCCChh-HcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC
Confidence 35677888999999999999999888887 67899999999999999988888889999999999999
Q ss_pred CcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCc
Q 045291 348 NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH 427 (682)
Q Consensus 348 n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 427 (682)
|.+.+.+|..+.. +++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|++++.
T Consensus 342 n~l~~~~p~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 342 NKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred CCCcCcCChHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCCEEECcCCEeeeE
Confidence 9999888887766 89999999999999999999999999999999999999988887665 799999999999999999
Q ss_pred ccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCC
Q 045291 428 MFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 507 (682)
Q Consensus 428 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 507 (682)
.|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|++++..|..+..+
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 99999999999999999999999999888999999999999999998888765 46899999999999999999999999
Q ss_pred CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCccc
Q 045291 508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS 587 (682)
Q Consensus 508 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 587 (682)
++|+.|++++|++.+ .+|..+.++++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+..++.++
T Consensus 499 ~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ 577 (968)
T PLN00113 499 SELMQLKLSENKLSG-EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577 (968)
T ss_pred hccCEEECcCCccee-eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEe
Confidence 999999999999987 7889999999999999999999999999999999999999999999999999888899999999
Q ss_pred ccCCCCCCCCC
Q 045291 588 YEGNIFLCGLP 598 (682)
Q Consensus 588 ~~~n~~~c~~~ 598 (682)
+.+|++.+..|
T Consensus 578 ls~N~l~~~~p 588 (968)
T PLN00113 578 ISHNHLHGSLP 588 (968)
T ss_pred ccCCcceeeCC
Confidence 99999887555
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-44 Score=352.73 Aligned_cols=388 Identities=23% Similarity=0.252 Sum_probs=321.7
Q ss_pred CCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEc
Q 045291 165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYA 244 (682)
Q Consensus 165 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 244 (682)
-+.|++++|.+....+..|.++++|+++++.+|.++ .| |.......+|+.|+|.+|.|+ .+..+.+.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~I-P~f~~~sghl~~L~L~~N~I~-sv~se~L~---------- 146 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RI-PRFGHESGHLEKLDLRHNLIS-SVTSEELS---------- 146 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hc-ccccccccceeEEeeeccccc-cccHHHHH----------
Confidence 445666666666666666666666666666666666 55 444444555666666666665 22222233
Q ss_pred cCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCC
Q 045291 245 DNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIND 324 (682)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~ 324 (682)
.++.|+.||||.|.++ .+|..-|..-.++++|+++.|
T Consensus 147 ------------------------------------------~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N 183 (873)
T KOG4194|consen 147 ------------------------------------------ALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASN 183 (873)
T ss_pred ------------------------------------------hHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccc
Confidence 3344555555555554 344333455567888888888
Q ss_pred CCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCc
Q 045291 325 SIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIP 404 (682)
Q Consensus 325 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 404 (682)
.|+.+....|..+.+|.+|.+++|.++ .+|...|..+++|+.|+|..|+|.....-.|.++++|+.|.+..|.+. .+.
T Consensus 184 ~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~ 261 (873)
T KOG4194|consen 184 RITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLD 261 (873)
T ss_pred cccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-ccc
Confidence 888888888999999999999999998 889888888999999999999998665678999999999999999998 888
Q ss_pred hhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCC
Q 045291 405 EYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 484 (682)
Q Consensus 405 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 484 (682)
+.+|.++.++++|+|+.|+++......+.+++.|+.|++++|.+..+.+++++-+++|++|+|++|+++...++.|..+.
T Consensus 262 DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 262 DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred CcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 88888999999999999999988888888999999999999999999999999999999999999999989999999999
Q ss_pred CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc---hhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCE
Q 045291 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI---PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEV 561 (682)
Q Consensus 485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 561 (682)
.|++|.|++|.+..+-..+|.++++|+.|||++|.++. .+ ...|.++++|++|++.+|++..+...+|.+++.|++
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~-~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW-CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE-EEecchhhhccchhhhheeecCceeeecchhhhccCcccce
Confidence 99999999999998888899999999999999999875 33 356889999999999999999888889999999999
Q ss_pred EEccCccCcccCCcccccccccCcccccCCCCCCCCCCC-----------------CCCCCCCCCCCC
Q 045291 562 FSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP-----------------ICISPATMPEAS 612 (682)
Q Consensus 562 L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~-----------------~~~~~~~~~~~~ 612 (682)
|||.+|.+...-|+.+.++ .++++.+....++|+|.+. .|..|+...+..
T Consensus 421 LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~~ 487 (873)
T KOG4194|consen 421 LDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQS 487 (873)
T ss_pred ecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcccccceeeeccCCcccccce
Confidence 9999999999889888887 8999999999999999865 688888877764
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-40 Score=327.31 Aligned_cols=372 Identities=23% Similarity=0.215 Sum_probs=226.7
Q ss_pred CCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCc
Q 045291 136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIE 215 (682)
Q Consensus 136 ~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~ 215 (682)
.-+.|++++|++.. +....|.++++|+++++.+|.++ .+|..-....+|+.|+|.+|.|+ ++....+..++.|+
T Consensus 79 ~t~~LdlsnNkl~~----id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alr 152 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSH----IDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALR 152 (873)
T ss_pred ceeeeecccccccc----CcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhh
Confidence 45679999999966 66667889999999999999988 77776666677999999999998 77688899999999
Q ss_pred EEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEE
Q 045291 216 MLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVD 295 (682)
Q Consensus 216 ~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ 295 (682)
.|||+.|.++ .++...+..-.++++|++++|.++.. -...|.++.+|..|.
T Consensus 153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l----------------------------~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTL----------------------------ETGHFDSLNSLLTLK 203 (873)
T ss_pred hhhhhhchhh-cccCCCCCCCCCceEEeecccccccc----------------------------ccccccccchheeee
Confidence 9999999987 56666666667788888888777632 123345566777777
Q ss_pred cCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcC
Q 045291 296 LSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNAL 375 (682)
Q Consensus 296 ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i 375 (682)
|+.|+++ .+|...|.++++|+.|++..|.+......+|.++++|+.|.+..|++. .+.++.|-.+.+++.|+|+.|++
T Consensus 204 LsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 204 LSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred cccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchh
Confidence 7777777 666666666777777666666666555555666666666666666655 33333333355555555555555
Q ss_pred CcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCcc
Q 045291 376 HGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQS 455 (682)
Q Consensus 376 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 455 (682)
.......+.++++|+.|++|.|.|. .+......-+++|++|+|++|+++...+..|..+..|++|.++.|++......+
T Consensus 282 ~~vn~g~lfgLt~L~~L~lS~NaI~-rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 282 QAVNEGWLFGLTSLEQLDLSYNAIQ-RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred hhhhcccccccchhhhhccchhhhh-eeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhH
Confidence 5444444555555555555555554 333333333445555555555555444444444444555555555444444444
Q ss_pred ccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcc---hhccCCCCCCEEEccCCcCCCCcchhhccCC
Q 045291 456 LSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP---VEFCQLDLLQILDISDNNISGRLIPSTFSNL 532 (682)
Q Consensus 456 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l 532 (682)
|.. +.+|++|||++|.++..+. ..|.++++|+.|++.+|++.. +...+|.++
T Consensus 361 f~~------------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~-I~krAfsgl 415 (873)
T KOG4194|consen 361 FVG------------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKS-IPKRAFSGL 415 (873)
T ss_pred HHH------------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeee-cchhhhccC
Confidence 444 4445555555444443221 234455555555555555543 334455555
Q ss_pred CCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291 533 KQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571 (682)
Q Consensus 533 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 571 (682)
.+|++|||.+|.|..+.|++|..+ .|+.|-+..-.+.|
T Consensus 416 ~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflC 453 (873)
T KOG4194|consen 416 EALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLC 453 (873)
T ss_pred cccceecCCCCcceeecccccccc-hhhhhhhcccceEE
Confidence 555555555555555555555544 45555444444444
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.4e-40 Score=308.47 Aligned_cols=481 Identities=24% Similarity=0.306 Sum_probs=274.5
Q ss_pred CCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcc
Q 045291 6 KLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSL 85 (682)
Q Consensus 6 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 85 (682)
-|..|.+++|.+ ..+.+.+.++..+.+|++++|++... |++++++..++.++.++|+++ .+|+.+..+..++
T Consensus 46 ~l~~lils~N~l---~~l~~dl~nL~~l~vl~~~~n~l~~l----p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 46 DLQKLILSHNDL---EVLREDLKNLACLTVLNVHDNKLSQL----PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred chhhhhhccCch---hhccHhhhcccceeEEEeccchhhhC----CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 356677777776 44556677788888888888887777 778888888888888888776 6677777777777
Q ss_pred eeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCC
Q 045291 86 KNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHL 165 (682)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L 165 (682)
+++.++|+... ++++ ++.+..|..++...|.+ ...|+.++. +.+|..|++.+|.+.. .|++.+. ++.|
T Consensus 118 ~l~~s~n~~~e-l~~~--i~~~~~l~dl~~~~N~i---~slp~~~~~-~~~l~~l~~~~n~l~~----l~~~~i~-m~~L 185 (565)
T KOG0472|consen 118 KLDCSSNELKE-LPDS--IGRLLDLEDLDATNNQI---SSLPEDMVN-LSKLSKLDLEGNKLKA----LPENHIA-MKRL 185 (565)
T ss_pred hhhccccceee-cCch--HHHHhhhhhhhcccccc---ccCchHHHH-HHHHHHhhccccchhh----CCHHHHH-HHHH
Confidence 77777776653 4443 66667777777666333 345566555 6677777777776655 5553333 6677
Q ss_pred CEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEcc
Q 045291 166 QELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYAD 245 (682)
Q Consensus 166 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 245 (682)
++|+...|.+. .+|..++.+.+|+.|+++.|++. .+ | .|..+..|+++.++.|.+. .++.+....++++..|+++
T Consensus 186 ~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~l-P-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLR 260 (565)
T KOG0472|consen 186 KHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FL-P-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLR 260 (565)
T ss_pred Hhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cC-C-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecc
Confidence 77777666665 56666777777777777777766 44 3 5666667777777777665 3444445556666666666
Q ss_pred CCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCC
Q 045291 246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDS 325 (682)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 325 (682)
+|+++ ..|+.+.-+.+|+.||+|+|.+++ .|.. ++++ .|+.|.+.+|.
T Consensus 261 dNklk-----------------------------e~Pde~clLrsL~rLDlSNN~is~-Lp~s-Lgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 261 DNKLK-----------------------------EVPDEICLLRSLERLDLSNNDISS-LPYS-LGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccc-----------------------------cCchHHHHhhhhhhhcccCCcccc-CCcc-cccc-eeeehhhcCCc
Confidence 66654 244445555555666666665552 2322 3344 45555555544
Q ss_pred CcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE----EecCCc---CC-cC-CCc---ccCCCCCCCEEE
Q 045291 326 IGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF----NISTNA---LH-GS-IPS---SFGNMKFLQILD 393 (682)
Q Consensus 326 l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L----~l~~n~---i~-~~-~~~---~~~~l~~L~~L~ 393 (682)
+..+-...+.+ ...+.++.|+.- .++... -+ .. .+. ....+.+.+.|+
T Consensus 309 lrTiRr~ii~~--------------------gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~ 368 (565)
T KOG0472|consen 309 LRTIRREIISK--------------------GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILD 368 (565)
T ss_pred hHHHHHHHHcc--------------------cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhc
Confidence 43221111100 000001111110 000000 00 00 011 112234456666
Q ss_pred ccCCcCCCcCchhhhhCCC--CCCEEEccCCcCCCcccccCCCCCCc-cEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291 394 LSNNHLTGEIPEYLAVGCV--NLNSLALSNNNLQGHMFSRNFNLTNL-KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN 470 (682)
Q Consensus 394 l~~n~~~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 470 (682)
+++-+++ .+|..+|..-. -...++++.|++.. .|..+..+..+ +.+.+++|.+. ..|..++.+++|..|++++|
T Consensus 369 ~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 369 VSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred ccccccc-cCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccc
Confidence 6666665 66666653221 14566666666653 22222222222 22334444333 55555666666666666666
Q ss_pred cCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291 471 SLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP 550 (682)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 550 (682)
.+. .+|..++.+..|+.|+++.|++. ..|.....+..++.+-.++|++.. ..+..+.++.+|..||+.+|.+. .+|
T Consensus 446 ~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~-vd~~~l~nm~nL~tLDL~nNdlq-~IP 521 (565)
T KOG0472|consen 446 LLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS-VDPSGLKNMRNLTTLDLQNNDLQ-QIP 521 (565)
T ss_pred hhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc-cChHHhhhhhhcceeccCCCchh-hCC
Confidence 665 55555666666666666666665 555555555555555555666654 44455666666666666666666 455
Q ss_pred hhhhcCCCCCEEEccCccCc
Q 045291 551 HQLVELKTLEVFSVAYNNLS 570 (682)
Q Consensus 551 ~~l~~l~~L~~L~l~~n~l~ 570 (682)
..++++++|++|++++|+|.
T Consensus 522 p~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 522 PILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhccccceeEEEecCCccC
Confidence 55666666666666666665
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.9e-38 Score=298.99 Aligned_cols=485 Identities=24% Similarity=0.323 Sum_probs=366.9
Q ss_pred EEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCceee
Q 045291 35 TLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLH 114 (682)
Q Consensus 35 ~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~ 114 (682)
.|++|+..+..+ |.....+- .+....+.++.-..+.++.+++|+.....++ +.++..|.+|+
T Consensus 13 ~lnlsnr~l~~v----p~~vyq~~-----------~t~~e~e~wW~qv~l~~lils~N~l~~l~~d---l~nL~~l~vl~ 74 (565)
T KOG0472|consen 13 SLNLSNRSLKDV----PTEVYQIN-----------LTTGEGENWWEQVDLQKLILSHNDLEVLRED---LKNLACLTVLN 74 (565)
T ss_pred ccccccchhhhc----cHHHHHHH-----------hhccchhhhhhhcchhhhhhccCchhhccHh---hhcccceeEEE
Confidence 366666666655 44333221 2223344455556788888888887654443 78889999999
Q ss_pred cCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEec
Q 045291 115 MSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDV 194 (682)
Q Consensus 115 l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 194 (682)
++.|. . ...|+.++. +..++.|+.+.|++.. +|. .++.+..|+.++++.|.+. ..|+.++.+-.|+.++.
T Consensus 75 ~~~n~--l-~~lp~aig~-l~~l~~l~vs~n~ls~----lp~-~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 75 VHDNK--L-SQLPAAIGE-LEALKSLNVSHNKLSE----LPE-QIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred eccch--h-hhCCHHHHH-HHHHHHhhcccchHhh----ccH-HHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 99843 3 467778888 8899999999999877 886 8888899999999999988 77778888899999999
Q ss_pred cCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceecccc
Q 045291 195 SFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSS 274 (682)
Q Consensus 195 ~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 274 (682)
.+|+++ ++ |..+..+.++..+++.+|+++ ..+.+... ++.|++++...|-+.
T Consensus 145 ~~N~i~-sl-p~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~------------------------ 196 (565)
T KOG0472|consen 145 TNNQIS-SL-PEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE------------------------ 196 (565)
T ss_pred cccccc-cC-chHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh------------------------
Confidence 999998 77 777888999999999999987 34444333 778888888777654
Q ss_pred CCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCC
Q 045291 275 YGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHM 354 (682)
Q Consensus 275 ~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 354 (682)
.+|..++.+..|..|++..|++. ..|+ |.+|+.|++++...|.+.-........++++..||++.|+++ ..
T Consensus 197 -----tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 197 -----TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred -----cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence 47888889999999999999987 6775 788999999999999988776666778899999999999997 88
Q ss_pred ChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhh-------------------------
Q 045291 355 PVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAV------------------------- 409 (682)
Q Consensus 355 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------------------------- 409 (682)
|..+.- +.+|+.||+++|.|+ ..|..++++ .|+.|-+.||.+. .+-..+..
T Consensus 268 Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~ 343 (565)
T KOG0472|consen 268 PDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG 343 (565)
T ss_pred chHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence 888876 888999999999998 455678888 8999999998875 33222211
Q ss_pred ----------------CCCCCCEEEccCCcCCCcccccCCC--CCCccEEECCCCcCcccCCccccCCCCCCE-EeccCC
Q 045291 410 ----------------GCVNLNSLALSNNNLQGHMFSRNFN--LTNLKWLLLEGNRFVGEIPQSLSKCSSLEG-LYLNNN 470 (682)
Q Consensus 410 ----------------~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~-L~l~~n 470 (682)
...+.++|+++.-+++..+.+.|.. -.-.+..+++.|++. .+|..+..+..+.+ +.+++|
T Consensus 344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcC
Confidence 1123445555555554433332221 112455666666655 44554444444443 344444
Q ss_pred cCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291 471 SLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP 550 (682)
Q Consensus 471 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 550 (682)
.+ +.+|..+..+++|..|+|++|.+. .+|..+..+..|+.|++|.|++. ..|.....+..++.+-.++|++....+
T Consensus 423 ~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 423 KI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccccCh
Confidence 44 478888889999999999999887 56677778888999999999997 488888888888888888899998888
Q ss_pred hhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCC
Q 045291 551 HQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFL 594 (682)
Q Consensus 551 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~ 594 (682)
+.+.++.+|..||+.+|.+. .+|..++.+.+++.+.+.|||+.
T Consensus 499 ~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88999999999999999999 56655999999999999999976
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-34 Score=299.94 Aligned_cols=487 Identities=26% Similarity=0.331 Sum_probs=336.4
Q ss_pred CcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcce
Q 045291 7 LKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86 (682)
Q Consensus 7 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 86 (682)
+..|+++.|.+. ....+.+++.-+|+.||+|+|.++.. |..+..+.+|+.|+++.|.+. ..|....++..|++
T Consensus 23 ~~~ln~~~N~~l--~~pl~~~~~~v~L~~l~lsnn~~~~f----p~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~ 95 (1081)
T KOG0618|consen 23 LQILNLRRNSLL--SRPLEFVEKRVKLKSLDLSNNQISSF----PIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQY 95 (1081)
T ss_pred HHhhhccccccc--cCchHHhhheeeeEEeeccccccccC----CchhhhHHHHhhcccchhhHh-hCchhhhhhhcchh
Confidence 456677777652 22234455555688888888887776 667777888888888887776 45566666666666
Q ss_pred eeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCC
Q 045291 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ 166 (682)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~ 166 (682)
+.+..|. ....|.. +..+++|+.|++++|.. +.+|..+.. +..+..+..++|.- +. .++... .+
T Consensus 96 lnL~~n~-l~~lP~~--~~~lknl~~LdlS~N~f---~~~Pl~i~~-lt~~~~~~~s~N~~------~~--~lg~~~-ik 159 (1081)
T KOG0618|consen 96 LNLKNNR-LQSLPAS--ISELKNLQYLDLSFNHF---GPIPLVIEV-LTAEEELAASNNEK------IQ--RLGQTS-IK 159 (1081)
T ss_pred heeccch-hhcCchh--HHhhhcccccccchhcc---CCCchhHHh-hhHHHHHhhhcchh------hh--hhcccc-ch
Confidence 6554444 3446654 77778888888887433 456666666 77777777777711 11 122222 67
Q ss_pred EEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccC
Q 045291 167 ELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADN 246 (682)
Q Consensus 167 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 246 (682)
.+++..|.+.+.++.....++. .|+|++|.+. ...+..+++|+.|....|.++. + -...++++.++.+.
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~-l----~~~g~~l~~L~a~~ 228 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLSE-L----EISGPSLTALYADH 228 (1081)
T ss_pred hhhhhhhhcccchhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccce-E----EecCcchheeeecc
Confidence 7777777777666666665555 5888888776 2346677778888887777752 1 12346677777777
Q ss_pred CcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCC
Q 045291 247 NELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSI 326 (682)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 326 (682)
|.+..... -....+|+.++++.++++ .+|+| ...+.+|+.++..+|.+
T Consensus 229 n~l~~~~~------------------------------~p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l 276 (1081)
T KOG0618|consen 229 NPLTTLDV------------------------------HPVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNANHNRL 276 (1081)
T ss_pred Ccceeecc------------------------------ccccccceeeecchhhhh-cchHH-HHhcccceEecccchhH
Confidence 77652111 112347888888888887 66777 67888888888888888
Q ss_pred cccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCC-CCEEEccCCcCCCcCch
Q 045291 327 GGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKF-LQILDLSNNHLTGEIPE 405 (682)
Q Consensus 327 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~ 405 (682)
... +..+...++|+.|++.+|.+. .+|..... +.+|++|++..|.+....+..|.-... |+.|..+.|++. ..|.
T Consensus 277 ~~l-p~ri~~~~~L~~l~~~~nel~-yip~~le~-~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~ 352 (1081)
T KOG0618|consen 277 VAL-PLRISRITSLVSLSAAYNELE-YIPPFLEG-LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPS 352 (1081)
T ss_pred Hhh-HHHHhhhhhHHHHHhhhhhhh-hCCCcccc-cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-cccc
Confidence 554 334445678888888888886 56654433 778888888888887544444444433 677777777776 5554
Q ss_pred hhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCC
Q 045291 406 YLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR 485 (682)
Q Consensus 406 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 485 (682)
.-....+.|+.|++.+|.+++.....+.+..+|+.|+|++|.+.......+.+++.|++|++++|.++ .+|..+..+..
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR 431 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence 33335667888888888888777777778888888888888888666677888888888888888887 77788888888
Q ss_pred CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291 486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA 565 (682)
Q Consensus 486 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 565 (682)
|++|...+|++. ..| .+..+++|+.+|+|.|+++....+..... ++|+.||+++|.-.......|..+..+...++.
T Consensus 432 L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 432 LHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred hHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecc
Confidence 888888888887 555 67788888888888888875444443322 788888888887554555666666677666666
Q ss_pred Cc
Q 045291 566 YN 567 (682)
Q Consensus 566 ~n 567 (682)
-|
T Consensus 509 ~~ 510 (1081)
T KOG0618|consen 509 LN 510 (1081)
T ss_pred cC
Confidence 65
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=5.4e-34 Score=296.00 Aligned_cols=504 Identities=22% Similarity=0.228 Sum_probs=328.2
Q ss_pred EeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeec
Q 045291 10 FGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLS 89 (682)
Q Consensus 10 L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~ 89 (682)
+|.+..++ ..+|.-+-.-..+..|+++.|-+-... .+.+.+.-+|+.|++++|.++ .-|..+..+..|+.+.+
T Consensus 3 vd~s~~~l---~~ip~~i~~~~~~~~ln~~~N~~l~~p---l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~ 75 (1081)
T KOG0618|consen 3 VDASDEQL---ELIPEQILNNEALQILNLRRNSLLSRP---LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNL 75 (1081)
T ss_pred cccccccC---cccchhhccHHHHHhhhccccccccCc---hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhccc
Confidence 45555554 444554444455667777777544321 123344445777777666654 44555555556666655
Q ss_pred cCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEE
Q 045291 90 ISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELR 169 (682)
Q Consensus 90 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~ 169 (682)
+.|.+ ..+|.. ..++.+|+++.|..|.. ...|.++.. +.+|++|+++.|.++. +|. .+..+..+..+.
T Consensus 76 s~n~i-~~vp~s--~~~~~~l~~lnL~~n~l---~~lP~~~~~-lknl~~LdlS~N~f~~----~Pl-~i~~lt~~~~~~ 143 (1081)
T KOG0618|consen 76 SRNYI-RSVPSS--CSNMRNLQYLNLKNNRL---QSLPASISE-LKNLQYLDLSFNHFGP----IPL-VIEVLTAEEELA 143 (1081)
T ss_pred chhhH-hhCchh--hhhhhcchhheeccchh---hcCchhHHh-hhcccccccchhccCC----Cch-hHHhhhHHHHHh
Confidence 54433 334432 55666666666665322 455555555 6666666666666655 554 555666666666
Q ss_pred ccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcc
Q 045291 170 MADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNEL 249 (682)
Q Consensus 170 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~ 249 (682)
.++|.....++. . ..+.+++..|.+.+.+ +..+..+.. .|+|++|.+. .. .+..+.+|+.+....|.+
T Consensus 144 ~s~N~~~~~lg~----~-~ik~~~l~~n~l~~~~-~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~l 211 (1081)
T KOG0618|consen 144 ASNNEKIQRLGQ----T-SIKKLDLRLNVLGGSF-LIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQL 211 (1081)
T ss_pred hhcchhhhhhcc----c-cchhhhhhhhhcccch-hcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhccc
Confidence 666622212221 1 1556666666665544 333444443 4666666654 11 134555566655555554
Q ss_pred cccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCccc
Q 045291 250 NAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGP 329 (682)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 329 (682)
... ....++++.|+.+.|.+....+. ..-.+|++++++++.+...
T Consensus 212 s~l--------------------------------~~~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~~l 256 (1081)
T KOG0618|consen 212 SEL--------------------------------EISGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLSNL 256 (1081)
T ss_pred ceE--------------------------------EecCcchheeeeccCcceeeccc---cccccceeeecchhhhhcc
Confidence 321 12335678888888887633322 2345788888888888887
Q ss_pred CCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhh
Q 045291 330 FRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAV 409 (682)
Q Consensus 330 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 409 (682)
. .+...+.+|+.++..+|.++ .+|..++. ..+|+.|.+..|.+. -+|....++++|++|++..|.+. .+|...+.
T Consensus 257 p-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~ 331 (1081)
T KOG0618|consen 257 P-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLA 331 (1081)
T ss_pred h-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHh
Confidence 6 77778888999999988886 78877776 678888888888887 45556677888999999999886 78877665
Q ss_pred CCCC-CCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCe
Q 045291 410 GCVN-LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQY 488 (682)
Q Consensus 410 ~~~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 488 (682)
.... |..|+.+.|.+.......-...+.|+.|++.+|.++...-..+.+...|+.|+|++|++.......+.+++.|++
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Lee 411 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEE 411 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHH
Confidence 4444 777777877776544322234667888899999888776667788889999999999988677777888899999
Q ss_pred ecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCcc
Q 045291 489 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568 (682)
Q Consensus 489 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 568 (682)
|+|++|+++ .+|..+..+..|++|...+|++.. .| .+..++.|+.+|++.|.++...-.....-++|++||+++|.
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 999999998 566888888899999999998873 66 67888999999999998885533322333789999999998
Q ss_pred CcccCCcccccccccCcccc
Q 045291 569 LSGEIPEWTAQFATFNESSY 588 (682)
Q Consensus 569 l~~~~~~~~~~~~~l~~~~~ 588 (682)
..-.....+..++.+...++
T Consensus 488 ~l~~d~~~l~~l~~l~~~~i 507 (1081)
T KOG0618|consen 488 RLVFDHKTLKVLKSLSQMDI 507 (1081)
T ss_pred ccccchhhhHHhhhhhheec
Confidence 64333333444444443333
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.9e-33 Score=275.10 Aligned_cols=364 Identities=27% Similarity=0.384 Sum_probs=162.9
Q ss_pred CCCCEEEccCCCCc-ccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcE
Q 045291 163 VHLQELRMADNDLR-GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKI 241 (682)
Q Consensus 163 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 241 (682)
+-.+-.++++|.++ +.+|.....+++++.|.|...++. .+ |..+..+.+|++|.+++|++.... +.+..++.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~v-PeEL~~lqkLEHLs~~HN~L~~vh--GELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QV-PEELSRLQKLEHLSMAHNQLISVH--GELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hC-hHHHHHHhhhhhhhhhhhhhHhhh--hhhccchhhHH
Confidence 33444444555444 244444445555555555544444 34 444445555555555555443211 12344444444
Q ss_pred EEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEc
Q 045291 242 FYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL 321 (682)
Q Consensus 242 L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l 321 (682)
+.++.|.+... -+|..+..+..|++||+|+|++. +.|.. +....++-.|++
T Consensus 83 v~~R~N~LKns---------------------------GiP~diF~l~dLt~lDLShNqL~-EvP~~-LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 83 VIVRDNNLKNS---------------------------GIPTDIFRLKDLTILDLSHNQLR-EVPTN-LEYAKNSIVLNL 133 (1255)
T ss_pred HhhhccccccC---------------------------CCCchhcccccceeeecchhhhh-hcchh-hhhhcCcEEEEc
Confidence 44444444321 13333444444555555555444 34443 334444444445
Q ss_pred CCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCC-
Q 045291 322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLT- 400 (682)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~- 400 (682)
++|+|..+...-|.+++.|-.||+++|.+. .+|..+.. +..|++|++++|.+....-..+..+++|++|.+++.+-+
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 555444444444444444444555555443 44444433 444555555554443222222233444444444443211
Q ss_pred CcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhh
Q 045291 401 GEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL 480 (682)
Q Consensus 401 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 480 (682)
..+|..+- ++.+|..+|++.|.+. ..|..+..+++|+.|++++|.++ .+......+.+|++|+++.|+++ ..|+++
T Consensus 212 ~N~Ptsld-~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 212 DNIPTSLD-DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred hcCCCchh-hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence 13333332 3444444444444444 23334444444455555554444 22333333444445555555544 444444
Q ss_pred cCCCCCCeecCCCCcCcC-CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCC
Q 045291 481 GNLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL 559 (682)
Q Consensus 481 ~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 559 (682)
..++.|+.|.+.+|+++- -+|+.++.+.+|+.+..++|.+. ..|+.+..|..|+.|.|+.|.+- .+|+++.-++-|
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE--lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l 364 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE--LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDL 364 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc--cCchhhhhhHHHHHhccccccee-echhhhhhcCCc
Confidence 444555555544444431 23444444444555555554443 34444444555555555555444 344444444555
Q ss_pred CEEEccCcc
Q 045291 560 EVFSVAYNN 568 (682)
Q Consensus 560 ~~L~l~~n~ 568 (682)
+.||+..|+
T Consensus 365 ~vLDlreNp 373 (1255)
T KOG0444|consen 365 KVLDLRENP 373 (1255)
T ss_pred ceeeccCCc
Confidence 555555444
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.7e-32 Score=269.96 Aligned_cols=384 Identities=27% Similarity=0.341 Sum_probs=261.2
Q ss_pred CCCCceeecCCCccccc-cchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcC
Q 045291 107 FKSLEHLHMSFAPIALN-TSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLAN 185 (682)
Q Consensus 107 l~~L~~L~l~~~~~~~~-~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 185 (682)
++-.+-.|+++ +.++ +.+|..+.. +++++.|.|...++.. +|. .++.|.+|++|.+++|++. .+...+..
T Consensus 6 LpFVrGvDfsg--NDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~~----vPe-EL~~lqkLEHLs~~HN~L~-~vhGELs~ 76 (1255)
T KOG0444|consen 6 LPFVRGVDFSG--NDFSGDRFPHDVEQ-MTQMTWLKLNRTKLEQ----VPE-ELSRLQKLEHLSMAHNQLI-SVHGELSD 76 (1255)
T ss_pred cceeecccccC--CcCCCCcCchhHHH-hhheeEEEechhhhhh----ChH-HHHHHhhhhhhhhhhhhhH-hhhhhhcc
Confidence 45556667777 5555 567777776 8888888888887766 775 7888888888888888877 44456777
Q ss_pred CCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCccc
Q 045291 186 MTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 265 (682)
Q Consensus 186 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 265 (682)
++.|+.+++..|++..+-.|..+..+..|..|||++|++. ..
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-Ev------------------------------------- 118 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EV------------------------------------- 118 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hc-------------------------------------
Confidence 8888888888887764433666777777777777777765 22
Q ss_pred ccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEc
Q 045291 266 LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDV 345 (682)
Q Consensus 266 l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 345 (682)
|..+..-+++-+|++|+|.|. .+|..++.+++.|-.|++++|.+.... .....+..|++|++
T Consensus 119 ----------------P~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LP-PQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 119 ----------------PTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLP-PQIRRLSMLQTLKL 180 (1255)
T ss_pred ----------------chhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcC-HHHHHHhhhhhhhc
Confidence 333334445555555555554 555555556666666666666655432 23344556666666
Q ss_pred cCCcCCCCCChhhhhcCCCceEEEecCCcCC-cCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcC
Q 045291 346 SNNNFQGHMPVEIGDILPSLFSFNISTNALH-GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNL 424 (682)
Q Consensus 346 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 424 (682)
++|.+.-.--..+. .+.+|+.|++++.+-+ ..+|..+..+.+|..+|+|.|.+. .+|+.++ .+++|+.|++++|++
T Consensus 181 s~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKI 257 (1255)
T ss_pred CCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCce
Confidence 66655311001111 1455666666665443 346667777778888888888776 7777776 677888888888877
Q ss_pred CCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCC-CCchhhhcCCCCCCeecCCCCcCcCCcchh
Q 045291 425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 503 (682)
Q Consensus 425 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 503 (682)
+.... ....-.+|++|+++.|+++ .+|.++..++.|+.|+..+|.++ +-+|+.++.+..|+.+...+|.+. ..|+.
T Consensus 258 teL~~-~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 258 TELNM-TEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred eeeec-cHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence 74322 2233457888888888887 67888888888888888888775 346778888888888888888887 78888
Q ss_pred ccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEE
Q 045291 504 FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFS 563 (682)
Q Consensus 504 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 563 (682)
++.+..|+.|.|++|++- ..|+++.-++.|+.||+..|.-....|..-..-++|+.-+
T Consensus 335 lcRC~kL~kL~L~~NrLi--TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYN 392 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLI--TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYN 392 (1255)
T ss_pred hhhhHHHHHhccccccee--echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeee
Confidence 888888888888888875 3788888888888888888876645543222224454433
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.1e-22 Score=237.30 Aligned_cols=341 Identities=20% Similarity=0.207 Sum_probs=161.3
Q ss_pred cccccccCCCCCCEEEccCCC------CcccCchhhcCCC-CCCEEeccCCccccccCCchhcccCCCcEEecCCCcCcc
Q 045291 154 ILDQGLCSLVHLQELRMADND------LRGSLPWCLANMT-SLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQI 226 (682)
Q Consensus 154 i~~~~l~~l~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~ 226 (682)
+...+|.++++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+ |..+ ...+|++|++.+|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~l-P~~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CM-PSNF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CC-CCcC-CccCCcEEECcCcccc-
Confidence 344456677777777765442 2223455555543 5777777777665 55 3333 3466777777776654
Q ss_pred ccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCc
Q 045291 227 PISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFP 306 (682)
Q Consensus 227 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 306 (682)
..+. .+..+++|+.++++++.... .+| .+..+++|+.|++++|.....+|
T Consensus 625 ~L~~-~~~~l~~Lk~L~Ls~~~~l~----------------------------~ip-~ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 625 KLWD-GVHSLTGLRNIDLRGSKNLK----------------------------EIP-DLSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred cccc-ccccCCCCCEEECCCCCCcC----------------------------cCC-ccccCCcccEEEecCCCCccccc
Confidence 2221 23455666666665543211 122 13455667777777766555566
Q ss_pred hHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCC
Q 045291 307 TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNM 386 (682)
Q Consensus 307 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l 386 (682)
.. +..+++|+.|++++|......+..+ .+++|+.|++++|...+.+|. ..++|++|++++|.+.. .|..+ .+
T Consensus 675 ~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l 746 (1153)
T PLN03210 675 SS-IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RL 746 (1153)
T ss_pred hh-hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cc
Confidence 55 4566666666666654322222222 455666666666644333332 13456666666666542 33222 34
Q ss_pred CCCCEEEccCCcCCC------cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCC
Q 045291 387 KFLQILDLSNNHLTG------EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS 460 (682)
Q Consensus 387 ~~L~~L~l~~n~~~~------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 460 (682)
++|++|.+.++.... .++...+...++|+.|++++|......|..+.++++|+.|++++|...+.+|... +++
T Consensus 747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~ 825 (1153)
T PLN03210 747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE 825 (1153)
T ss_pred cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence 555555555432110 0111111123344444444444443444444444444444444443332333332 344
Q ss_pred CCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCc-CCCCcchhhccCCCCCcEEE
Q 045291 461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLIPSTFSNLKQIESLD 539 (682)
Q Consensus 461 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~ 539 (682)
+|++|++++|.....+|.. .++|++|+|++|.++ ..|..+..+++|+.|++++|+ +. .+|..+..+++|+.++
T Consensus 826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~--~l~~~~~~L~~L~~L~ 899 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ--RVSLNISKLKHLETVD 899 (1153)
T ss_pred ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC--ccCcccccccCCCeee
Confidence 4444444444332222221 234444444444444 233344444444444444422 22 1333334444444444
Q ss_pred CCCC
Q 045291 540 LSYN 543 (682)
Q Consensus 540 l~~n 543 (682)
+++|
T Consensus 900 l~~C 903 (1153)
T PLN03210 900 FSDC 903 (1153)
T ss_pred cCCC
Confidence 4444
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=2.3e-26 Score=217.45 Aligned_cols=386 Identities=19% Similarity=0.196 Sum_probs=238.1
Q ss_pred CCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccC-CccccccCCchhcccCCC
Q 045291 136 SLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSF-NQLTGSISSSPLVHLTSI 214 (682)
Q Consensus 136 ~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~l~~L 214 (682)
.-..++|..|+|.. ||+++|..+++||.|+|++|.|+.+-|++|.++++|.+|.+.+ |+|+ .++...|..+..+
T Consensus 68 ~tveirLdqN~I~~----iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~sl 142 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS----IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSL 142 (498)
T ss_pred cceEEEeccCCccc----CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHH
Confidence 56678888888877 8888888888999999999988888888888888887776666 7887 7767788888888
Q ss_pred cEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEE
Q 045291 215 EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFV 294 (682)
Q Consensus 215 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L 294 (682)
+.|.+.-|++. .+..+.+..++++..|.+.+|.+...-. ..+..+..++.+
T Consensus 143 qrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~----------------------------~tf~~l~~i~tl 193 (498)
T KOG4237|consen 143 QRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICK----------------------------GTFQGLAAIKTL 193 (498)
T ss_pred HHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhcc----------------------------ccccchhccchH
Confidence 88888888887 4445567788888888888877653211 122333344444
Q ss_pred EcCCCCCcCc------------CchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEE--Ec-cCCcCCCCCChhhh
Q 045291 295 DLSHIKMNGE------------FPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL--DV-SNNNFQGHMPVEIG 359 (682)
Q Consensus 295 ~ls~~~~~~~------------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L--~l-~~n~~~~~~~~~~~ 359 (682)
.+..|.+-.. .|. .+++........+.+..+..+....|... ++.+ .+ +.+...+..|..-+
T Consensus 194 hlA~np~icdCnL~wla~~~a~~~i-etsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf 270 (498)
T KOG4237|consen 194 HLAQNPFICDCNLPWLADDLAMNPI-ETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCF 270 (498)
T ss_pred hhhcCccccccccchhhhHHhhchh-hcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHH
Confidence 4444442110 000 02222222222233333333222222221 2222 11 22334446677667
Q ss_pred hcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCcc
Q 045291 360 DILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLK 439 (682)
Q Consensus 360 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 439 (682)
..+++|++|++++|+++.+.+.+|.+...+++|.|..|++. .+...+|.++..|++|++.+|+|+...|.+|..+..|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 77899999999999999888888999999999999999987 88888888899999999999999988888888888888
Q ss_pred EEECCCCcCccc-----CCcc-----------ccCCCCCCEEeccCCcCCCC---chhhh---------cCCCCCCee-c
Q 045291 440 WLLLEGNRFVGE-----IPQS-----------LSKCSSLEGLYLNNNSLSGK---IPRWL---------GNLTRLQYI-I 490 (682)
Q Consensus 440 ~L~l~~n~~~~~-----~~~~-----------~~~l~~L~~L~l~~n~~~~~---~~~~~---------~~l~~L~~L-~ 490 (682)
+|.+-.|++... +.++ -.+...++.+.+++..+.+. .|+.. ..++-+.++ .
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvR 429 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVR 429 (498)
T ss_pred eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHh
Confidence 888877765311 0011 11123445555555544311 11110 111122221 1
Q ss_pred CCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCc
Q 045291 491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN 567 (682)
Q Consensus 491 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 567 (682)
-++..+. .+|..+. ..-.+|++.+|.++. +|.. .+.+| .+|+++|++.......|.++++|.+|-+++|
T Consensus 430 cSnk~lk-~lp~~iP--~d~telyl~gn~~~~--vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 430 CSNKLLK-LLPRGIP--VDVTELYLDGNAITS--VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hcccchh-hcCCCCC--chhHHHhcccchhcc--cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 1121222 2222211 124556666666653 4433 44555 6666666666555556666666666666654
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=1.1e-25 Score=212.85 Aligned_cols=257 Identities=20% Similarity=0.239 Sum_probs=172.6
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccC-CcCCCcCchhhhhCCCCCCEE
Q 045291 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSN-NHLTGEIPEYLAVGCVNLNSL 417 (682)
Q Consensus 339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~L 417 (682)
.-.+++|..|+|+ .+|...|..+++|+.|||++|.|+.+.|++|.+++++..|-+.+ |+|+ .++...|.++.+|+.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 3445566666665 55555555566666666666666666666666666665555544 5555 6666666666666666
Q ss_pred EccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcC-------------------------
Q 045291 418 ALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL------------------------- 472 (682)
Q Consensus 418 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~------------------------- 472 (682)
.+.-|++.....+.|..++++..|.+.+|.+..+...+|..+.+++.+.+..|++
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 6666666655555666666666666666666544444566666666666555541
Q ss_pred -----------CCCchhhhcCCCCCCee--cC-CCCcCcCCcc-hhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291 473 -----------SGKIPRWLGNLTRLQYI--IM-PNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIES 537 (682)
Q Consensus 473 -----------~~~~~~~~~~l~~L~~L--~L-~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~ 537 (682)
....+..|.. +++.+ .+ +.+...++.| ..|..+++|+.|+|++|+++. +.+.+|.+...+++
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQE 302 (498)
T ss_pred cchHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhh
Confidence 1111111111 12222 11 2222333333 568999999999999999987 77899999999999
Q ss_pred EECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCCC
Q 045291 538 LDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP 600 (682)
Q Consensus 538 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~ 600 (682)
|.|.+|+|.......|.++..|+.|+|++|++++.-|..+....++..+.+-.|||.|+|.+.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~ 365 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLA 365 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchH
Confidence 999999999777788999999999999999999998888888888899999999999999653
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=1.2e-20 Score=220.31 Aligned_cols=341 Identities=21% Similarity=0.196 Sum_probs=246.5
Q ss_pred chhhcCCCCCCEEeccCCcc------ccccCCchhcccC-CCcEEecCCCcCccccCccccccCCCCcEEEccCCccccc
Q 045291 180 PWCLANMTSLRILDVSFNQL------TGSISSSPLVHLT-SIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAE 252 (682)
Q Consensus 180 ~~~~~~l~~L~~L~L~~n~l------~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 252 (682)
+.+|.++++|+.|.+..+.. ...+ |..+..++ +|+.|.+.++++. ..|.. ....+|+.|++.++.+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~l-p~~~~~lp~~Lr~L~~~~~~l~-~lP~~--f~~~~L~~L~L~~s~l~-- 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHL-PEGFDYLPPKLRLLRWDKYPLR-CMPSN--FRPENLVKLQMQGSKLE-- 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeec-CcchhhcCcccEEEEecCCCCC-CCCCc--CCccCCcEEECcCcccc--
Confidence 34566667777776654432 1123 33344433 5666776666654 22321 23456666666666543
Q ss_pred ccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCC
Q 045291 253 ITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRL 332 (682)
Q Consensus 253 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 332 (682)
.++..+..+++|+.++++++.....+|. +..+++|+.|++++|......+.
T Consensus 625 ---------------------------~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 625 ---------------------------KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred ---------------------------ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccch
Confidence 2445556788999999998876567775 56789999999998876666667
Q ss_pred CCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCC
Q 045291 333 PIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCV 412 (682)
Q Consensus 333 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 412 (682)
.+..+++|+.|++++|...+.+|..+ .+++|+.|++++|......|.. .++|++|++++|.+. .+|... .++
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~ 747 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLE 747 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--ccc
Confidence 78888999999999986555777655 4789999999998765555532 467899999999886 777654 478
Q ss_pred CCCEEEccCCcCC-------CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCC
Q 045291 413 NLNSLALSNNNLQ-------GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTR 485 (682)
Q Consensus 413 ~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 485 (682)
+|+.|.+.++... ...+..+..+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|... ++++
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~s 826 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLES 826 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cccc
Confidence 8888888774322 1112223345789999999998877889999999999999999986555677655 7899
Q ss_pred CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291 486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA 565 (682)
Q Consensus 486 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 565 (682)
|+.|++++|......|.. .++|+.|+|++|.++. +|..+..+++|+.|++++|+-...+|..+..+++|+.++++
T Consensus 827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred cCEEECCCCCcccccccc---ccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 999999998655444432 3689999999999974 78889999999999999965544677778889999999999
Q ss_pred CccC
Q 045291 566 YNNL 569 (682)
Q Consensus 566 ~n~l 569 (682)
+|.-
T Consensus 902 ~C~~ 905 (1153)
T PLN03210 902 DCGA 905 (1153)
T ss_pred CCcc
Confidence 9863
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=1.9e-19 Score=194.72 Aligned_cols=250 Identities=24% Similarity=0.292 Sum_probs=187.6
Q ss_pred CCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhh
Q 045291 281 FPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD 360 (682)
Q Consensus 281 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 360 (682)
+|..+. ++|+.|++++|.++ .+|. ..++|++|++++|+++.+.. ..++|+.|++++|.+. .+|..
T Consensus 216 LP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~-~Lp~l--- 280 (788)
T PRK15387 216 LPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT-HLPAL--- 280 (788)
T ss_pred CCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccC----cccccceeeccCCchh-hhhhc---
Confidence 454443 37888999999887 4554 35789999999998887532 2468899999999886 45542
Q ss_pred cCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccE
Q 045291 361 ILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKW 440 (682)
Q Consensus 361 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 440 (682)
+++|+.|++++|.++.. |. .+++|++|++++|++. .+|.. ..+|+.|++++|++++.. . ...+|+.
T Consensus 281 -p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~LP-~---lp~~Lq~ 346 (788)
T PRK15387 281 -PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTSLP-T---LPSGLQE 346 (788)
T ss_pred -hhhcCEEECcCCccccc-cc---cccccceeECCCCccc-cCCCC----cccccccccccCcccccc-c---cccccce
Confidence 45788999999988743 33 3478999999999887 56642 346888899999887633 2 2357999
Q ss_pred EECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcC
Q 045291 441 LLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 520 (682)
Q Consensus 441 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 520 (682)
|++++|.+.+ +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|++
T Consensus 347 LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~L 414 (788)
T PRK15387 347 LSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL 414 (788)
T ss_pred EecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcC
Confidence 9999999884 4432 357888999999988 45543 3578999999999985 3332 36799999999999
Q ss_pred CCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccc
Q 045291 521 SGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT 577 (682)
Q Consensus 521 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 577 (682)
++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.+++++|++++..+..+
T Consensus 415 ss--IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 415 TS--LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CC--CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 75 5543 356888999999998 678888899999999999999998766543
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=6.1e-19 Score=190.79 Aligned_cols=183 Identities=26% Similarity=0.323 Sum_probs=93.3
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEE
Q 045291 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA 418 (682)
Q Consensus 339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 418 (682)
+|+.|++++|+++ .+|.. +++|+.|++++|.+++. |.. ..+|+.|++++|.+. .+|. ...+|+.|+
T Consensus 283 ~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~-~LP~----lp~~Lq~Ld 348 (788)
T PRK15387 283 GLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLT-SLPT----LPSGLQELS 348 (788)
T ss_pred hcCEEECcCCccc-ccccc----ccccceeECCCCccccC-CCC---cccccccccccCccc-cccc----cccccceEe
Confidence 3444555555544 33321 34455555555555432 211 123445555555554 3442 123455555
Q ss_pred ccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcC
Q 045291 419 LSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG 498 (682)
Q Consensus 419 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 498 (682)
+++|++++... ..++|+.|++++|.+.. +|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|.+++
T Consensus 349 LS~N~Ls~LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss 416 (788)
T PRK15387 349 VSDNQLASLPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS 416 (788)
T ss_pred cCCCccCCCCC----CCcccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC
Confidence 55555554221 12345555566555553 3322 2356666666666652 3322 2456666666666664
Q ss_pred CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh
Q 045291 499 PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL 553 (682)
Q Consensus 499 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 553 (682)
+|.. ..+|+.|++++|+++. +|..+..+++|+.|++++|++++..+..+
T Consensus 417 -IP~l---~~~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 417 -LPML---PSGLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred -CCcc---hhhhhhhhhccCcccc--cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2322 2346666777777653 56666666677777777777766655555
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=8.2e-18 Score=183.46 Aligned_cols=246 Identities=22% Similarity=0.361 Sum_probs=166.1
Q ss_pred CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369 (682)
Q Consensus 290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 369 (682)
+...|+++++.++ .+|..+ .+.++.|++++|.+..+.... ..+|++|++++|.++ .+|..+ .++|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLPENL---QGNIKTLYANSNQLT-SIPATL---PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCCccc-cCChhh---hccccEEE
Confidence 4567778777776 456542 246788888888877654322 247888888888876 566654 24688888
Q ss_pred ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCc
Q 045291 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV 449 (682)
Q Consensus 370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 449 (682)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++... ..+ .++|+.|++++|.+.
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCccc
Confidence 8888877 3444432 46888888888887 6666442 47888888888877543 222 246788888888877
Q ss_pred ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhc
Q 045291 450 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF 529 (682)
Q Consensus 450 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 529 (682)
. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+. ++|+.|++++|+++. +|..+
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~--LP~~l 386 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETLP--PTITTLDVSRNALTN--LPENL 386 (754)
T ss_pred c-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCC--CCHhH
Confidence 4 34333 3578888888888874 554442 688888888888873 444442 578888888888874 44444
Q ss_pred cCCCCCcEEECCCCcCCCCchhhh----hcCCCCCEEEccCccCc
Q 045291 530 SNLKQIESLDLSYNKLNGKMPHQL----VELKTLEVFSVAYNNLS 570 (682)
Q Consensus 530 ~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~ 570 (682)
. .+|+.|++++|++. .+|..+ ..++.+..+++.+|+++
T Consensus 387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 36888888888887 344433 33577788888888876
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=1.3e-18 Score=177.12 Aligned_cols=252 Identities=24% Similarity=0.227 Sum_probs=108.9
Q ss_pred EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCccc----CCCCCCCCCCccEEEccCCcCCC------CCChhhhhcCC
Q 045291 294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGP----FRLPIHPHRRLRFLDVSNNNFQG------HMPVEIGDILP 363 (682)
Q Consensus 294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~------~~~~~~~~~l~ 363 (682)
|+|..+.+.+..-..++..+..|++++++++.+... ....+...+++++++++++.+.+ .++..+.. ++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~-~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK-GC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh-cC
Confidence 344444444222223344445555555555554321 11122334456666666655541 11112222 55
Q ss_pred CceEEEecCCcCCcCCCcccCCCCC---CCEEEccCCcCCCcCchh---hhhCC-CCCCEEEccCCcCCCc----ccccC
Q 045291 364 SLFSFNISTNALHGSIPSSFGNMKF---LQILDLSNNHLTGEIPEY---LAVGC-VNLNSLALSNNNLQGH----MFSRN 432 (682)
Q Consensus 364 ~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~l~~n~~~~~~~~~---~~~~~-~~L~~L~l~~n~l~~~----~~~~~ 432 (682)
+|+.|++++|.+.+..+..+..+.. |++|++++|.+.+..... ....+ ++|+.|++++|.+++. ....+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 6666666666655433333333333 666666666554211111 11123 4555555555555521 12223
Q ss_pred CCCCCccEEECCCCcCccc----CCccccCCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCcCcCCcchhc
Q 045291 433 FNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHLEGPIPVEF 504 (682)
Q Consensus 433 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 504 (682)
..+++|++|++++|.+.+. ++..+...++|++|++++|.+.+. ++..+..+++|++|++++|.+++.....+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 3344555555555554421 122233334555555555554422 12233344455555555555443211111
Q ss_pred c-----CCCCCCEEEccCCcCCCC---cchhhccCCCCCcEEECCCCcCC
Q 045291 505 C-----QLDLLQILDISDNNISGR---LIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 505 ~-----~l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
. ..+.|++|++++|.++.. .....+..+++|+.+++++|+++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 1 124455555555554310 11223333445555555555554
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=2.7e-17 Score=179.45 Aligned_cols=248 Identities=27% Similarity=0.363 Sum_probs=192.3
Q ss_pred CCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEE
Q 045291 314 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393 (682)
Q Consensus 314 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 393 (682)
.+...|++++++++.+.. .+ .+.++.|++++|.++ .+|..++ ++|+.|++++|.++. +|..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~-~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA-CI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTS-IPATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCc-cc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCcccc-CChhh--hccccEEE
Confidence 457889999998887543 22 357999999999998 7787653 589999999999984 45444 24799999
Q ss_pred ccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCC
Q 045291 394 LSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473 (682)
Q Consensus 394 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 473 (682)
+++|.+. .+|..+. .+|+.|++++|++.. +|..+ .++|+.|++++|.+.. +|..+. ++|+.|++++|.+.
T Consensus 248 Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhHh---CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 9999998 8887664 589999999999985 44444 3589999999999985 454432 57999999999998
Q ss_pred CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh
Q 045291 474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL 553 (682)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 553 (682)
. +|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++. +|..+ .++|+.|++++|+++. +|..+
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~Lt~-LP~~l 386 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV--LPETL--PPTITTLDVSRNALTN-LPENL 386 (754)
T ss_pred c-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc--CChhh--cCCcCEEECCCCcCCC-CCHhH
Confidence 4 55433 3789999999999985 455443 799999999999984 56555 3689999999999995 55555
Q ss_pred hcCCCCCEEEccCccCcccCCccccc----ccccCcccccCCCCCC
Q 045291 554 VELKTLEVFSVAYNNLSGEIPEWTAQ----FATFNESSYEGNIFLC 595 (682)
Q Consensus 554 ~~l~~L~~L~l~~n~l~~~~~~~~~~----~~~l~~~~~~~n~~~c 595 (682)
. ++|+.|++++|++. .+|..+.. .+.+..+++.+||+..
T Consensus 387 ~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 387 P--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred H--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 4 37999999999998 56653333 3566788899998753
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.4e-18 Score=176.80 Aligned_cols=274 Identities=23% Similarity=0.241 Sum_probs=192.9
Q ss_pred EEEcCCCCCccc-CCCCCCCCCCccEEEccCCcCCCC----CChhhhhcCCCceEEEecCCcCCc------CCCcccCCC
Q 045291 318 TLFLINDSIGGP-FRLPIHPHRRLRFLDVSNNNFQGH----MPVEIGDILPSLFSFNISTNALHG------SIPSSFGNM 386 (682)
Q Consensus 318 ~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n~i~~------~~~~~~~~l 386 (682)
.|+|..+.+++. ....+..+..|+.|+++++.+++. ++..+ ...++++.++++++.+.+ ..+..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l-~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL-RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH-hhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 466777776632 223344567799999999988642 22222 236779999999988762 233467778
Q ss_pred CCCCEEEccCCcCCCcCchhhhhCCC---CCCEEEccCCcCCCc----ccccCCCC-CCccEEECCCCcCccc----CCc
Q 045291 387 KFLQILDLSNNHLTGEIPEYLAVGCV---NLNSLALSNNNLQGH----MFSRNFNL-TNLKWLLLEGNRFVGE----IPQ 454 (682)
Q Consensus 387 ~~L~~L~l~~n~~~~~~~~~~~~~~~---~L~~L~l~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~~~~~----~~~ 454 (682)
++|++|++++|.+.+..+..+ ..+. +|++|++++|++.+. ....+..+ ++|+.|++++|.+++. .+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 899999999999874444333 2344 499999999998742 22334456 8999999999998742 345
Q ss_pred cccCCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCcCcCCc----chhccCCCCCCEEEccCCcCCCCcch
Q 045291 455 SLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGRLIP 526 (682)
Q Consensus 455 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~~~~ 526 (682)
.+..+++|++|++++|.+.+. ++..+...++|++|++++|.+++.. +..+..+++|+.|++++|++++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 667788999999999998842 3344566789999999999987543 34567789999999999998752122
Q ss_pred hhcc----CCCCCcEEECCCCcCCC----CchhhhhcCCCCCEEEccCccCccc----CCcccccc-cccCcccccCCCC
Q 045291 527 STFS----NLKQIESLDLSYNKLNG----KMPHQLVELKTLEVFSVAYNNLSGE----IPEWTAQF-ATFNESSYEGNIF 593 (682)
Q Consensus 527 ~~~~----~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~-~~l~~~~~~~n~~ 593 (682)
.... ..+.|++|++++|.++. .+...+..+++|+.+++++|.++.. .......+ ..++.+++.+|||
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2122 24799999999999972 2345566778999999999999843 22222223 5666777777764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.7e-18 Score=145.34 Aligned_cols=183 Identities=30% Similarity=0.437 Sum_probs=138.9
Q ss_pred CCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCE
Q 045291 385 NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEG 464 (682)
Q Consensus 385 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 464 (682)
.+.+.+.|.+++|+++ .+|..+. .+.+|+.|++.+|+++. .|..+..+++|+.|+++-|++. ..|..|+.++.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia-~l~nlevln~~nnqie~-lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIA-ELKNLEVLNLSNNQIEE-LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHH-Hhhhhhhhhcccchhhh-cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 4455666777777776 6666655 57777777777777764 4455667788888888877776 67888888888888
Q ss_pred EeccCCcCCC-CchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCC
Q 045291 465 LYLNNNSLSG-KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543 (682)
Q Consensus 465 L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n 543 (682)
||+.+|++.+ ..|..|..++.|+.|+|++|.+. .+|..++.+++|+.|.+.+|.+-+ .|..++.++.|++|++.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccc
Confidence 8888888753 56778888888999999999988 777788999999999999998864 7888899999999999999
Q ss_pred cCCCCchhhhhcCC---CCCEEEccCccCcccCCc
Q 045291 544 KLNGKMPHQLVELK---TLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 544 ~l~~~~~~~l~~l~---~L~~L~l~~n~l~~~~~~ 575 (682)
+++. +|..++.+. +=+.+.+.+|+|...+.+
T Consensus 184 rl~v-lppel~~l~l~~~k~v~r~E~NPwv~pIae 217 (264)
T KOG0617|consen 184 RLTV-LPPELANLDLVGNKQVMRMEENPWVNPIAE 217 (264)
T ss_pred eeee-cChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence 9984 444455443 335567788888766654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=7.5e-18 Score=141.57 Aligned_cols=179 Identities=27% Similarity=0.385 Sum_probs=147.7
Q ss_pred CCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCee
Q 045291 410 GCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489 (682)
Q Consensus 410 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 489 (682)
.+.+.+.|.+++|+++...| .+..+.+|+.|++++|++. .+|..++.++.|+.|+++-|++. ..|..|+.+|.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 46677888999999986544 4567889999999999987 67888999999999999999987 889999999999999
Q ss_pred cCCCCcCcC-CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCcc
Q 045291 490 IMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568 (682)
Q Consensus 490 ~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 568 (682)
||.+|++.. ..|..|-.++.|+.|+|++|.+. ..|...+.+++|+.|.+++|.+. ..|..++.++.|+.|.+.+|.
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe--~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc--cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 999999875 57888888999999999999986 57888899999999999999988 678889999999999999999
Q ss_pred CcccCCccccccccc---CcccccCCCCCC
Q 045291 569 LSGEIPEWTAQFATF---NESSYEGNIFLC 595 (682)
Q Consensus 569 l~~~~~~~~~~~~~l---~~~~~~~n~~~c 595 (682)
++-.-|+ ++.+.-. +....+.|||.-
T Consensus 185 l~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 185 LTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 9854444 4443222 234456677653
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.35 E-value=2.9e-12 Score=139.97 Aligned_cols=114 Identities=32% Similarity=0.560 Sum_probs=97.4
Q ss_pred CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEc
Q 045291 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564 (682)
Q Consensus 485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 564 (682)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++ .+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 46788899999988888889999999999999999987 67888899999999999999999999999999999999999
Q ss_pred cCccCcccCCccccc-ccccCcccccCCCCCCCCCC
Q 045291 565 AYNNLSGEIPEWTAQ-FATFNESSYEGNIFLCGLPL 599 (682)
Q Consensus 565 ~~n~l~~~~~~~~~~-~~~l~~~~~~~n~~~c~~~~ 599 (682)
++|++++.+|..+.. ...+..+++.+|+..|+.+.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999999999876554 24556778899999998654
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=8e-13 Score=128.16 Aligned_cols=185 Identities=24% Similarity=0.266 Sum_probs=78.4
Q ss_pred CCCceEEEecCCcCCcC--CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCc-ccccCCCCCCc
Q 045291 362 LPSLFSFNISTNALHGS--IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH-MFSRNFNLTNL 438 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L 438 (682)
|++++.|+++.|-+..- +......+|+|+.|+++.|++..-.....-..+++|+.|.++.|.++.. .......+|+|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 44445555544444321 1122334445555555555443111111111244555555555554411 11222234555
Q ss_pred cEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCc-hhhhcCCCCCCeecCCCCcCcCCc-chh-----ccCCCCCC
Q 045291 439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI-PRWLGNLTRLQYIIMPNNHLEGPI-PVE-----FCQLDLLQ 511 (682)
Q Consensus 439 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~-----~~~l~~L~ 511 (682)
+.|++.+|...........-+..|++|+|++|++.... -.....++.|+.|+++.|.+.++- |+. ...+++|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 55555555322122222233445555555555544211 022344555555555555554321 111 23345566
Q ss_pred EEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291 512 ILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 512 ~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
+|++++|+|.....-..+..+++|+.|.+..|.+.
T Consensus 305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 305 YLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeecccCccccccccchhhccchhhhhhccccccc
Confidence 66666665543222233444455555555555554
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=1.1e-12 Score=131.24 Aligned_cols=195 Identities=29% Similarity=0.445 Sum_probs=134.5
Q ss_pred CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL 441 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 441 (682)
+..-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+. .+..|..|+++.|++... |..+..++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS~l-p~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLSHL-PDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhhcC-ChhhhcCc-ceeE
Confidence 334455677777776 55666666777777788888776 6776665 577788888888887743 33444454 7778
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291 442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 521 (682)
Q Consensus 442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 521 (682)
.+++|+++ .+|..++....|..||.+.|.+. .+|..+.++.+|+.|.++.|.+.. .|..++.++ |..||+|+|+++
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee
Confidence 88888776 56666667778888888888877 566667778888888888888773 444455554 788888888887
Q ss_pred CCcchhhccCCCCCcEEECCCCcCCCCchhhhhc---CCCCCEEEccCcc
Q 045291 522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE---LKTLEVFSVAYNN 568 (682)
Q Consensus 522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~ 568 (682)
.+|-.|..|+.|++|-|.+|.+. ..|..+.. ..--++|+..-++
T Consensus 225 --~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 --YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred --ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 37777888888888888888887 55554432 2233455666553
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=1.1e-11 Score=117.12 Aligned_cols=138 Identities=16% Similarity=0.244 Sum_probs=104.2
Q ss_pred CCCCCccEEECCCCcCccc----CCccccCCCCCCEEeccCCcCCC----CchhhhcCCCCCCeecCCCCcCcCC----c
Q 045291 433 FNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLSG----KIPRWLGNLTRLQYIIMPNNHLEGP----I 500 (682)
Q Consensus 433 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~ 500 (682)
...+.|+.+...+|++... +...|...+.|+.+.+..|.|.. .....|..+++|+.|||++|.++.. +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3567899999999987643 34567778899999999998753 2345678899999999999998743 3
Q ss_pred chhccCCCCCCEEEccCCcCCCCcc---hhhc-cCCCCCcEEECCCCcCCCC----chhhhhcCCCCCEEEccCccCc
Q 045291 501 PVEFCQLDLLQILDISDNNISGRLI---PSTF-SNLKQIESLDLSYNKLNGK----MPHQLVELKTLEVFSVAYNNLS 570 (682)
Q Consensus 501 ~~~~~~l~~L~~L~Ls~n~~~~~~~---~~~~-~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~ 570 (682)
..+++.+++|+.|++++|.+...-. ..++ ...++|+.|.+.+|.|+.. +...+...+.|..|+|++|.+.
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 4568889999999999998874211 1222 3468999999999998733 2234556789999999999994
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.14 E-value=4.5e-11 Score=106.30 Aligned_cols=15 Identities=27% Similarity=0.394 Sum_probs=4.0
Q ss_pred CCCCCcEEECCCCcC
Q 045291 531 NLKQIESLDLSYNKL 545 (682)
Q Consensus 531 ~l~~L~~L~l~~n~l 545 (682)
.+++|+.|++.+|++
T Consensus 111 ~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPV 125 (175)
T ss_dssp G-TT--EEE-TT-GG
T ss_pred cCCCcceeeccCCcc
Confidence 334444444444433
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.3e-11 Score=113.91 Aligned_cols=130 Identities=28% Similarity=0.299 Sum_probs=62.8
Q ss_pred CCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecC
Q 045291 412 VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIM 491 (682)
Q Consensus 412 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 491 (682)
..|+++|+++|.++. +....+-.|.++.|+++.|.+... ..+..+++|+.||+++|.+. ....+=..+-++++|.|
T Consensus 284 q~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 344555555554442 222333445555555555555432 12444555555555555554 33333344455555555
Q ss_pred CCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291 492 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 492 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 547 (682)
++|.|.+. +.+..+-+|..||+++|+|..-.....++++|.|+.+.|.+|++.+
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 55555422 2334445555555555555431222345555555555555555553
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.3e-11 Score=119.80 Aligned_cols=212 Identities=24% Similarity=0.213 Sum_probs=156.6
Q ss_pred cCCCceEEEecCCcCCcCCC-cccCCCCCCCEEEccCCcCCCcC-chhhhhCCCCCCEEEccCCcCCCccccc-CCCCCC
Q 045291 361 ILPSLFSFNISTNALHGSIP-SSFGNMKFLQILDLSNNHLTGEI-PEYLAVGCVNLNSLALSNNNLQGHMFSR-NFNLTN 437 (682)
Q Consensus 361 ~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~ 437 (682)
.+.+|+++.+.++.+..... +....+++++.||+++|-+..-. -..+...+++|+.|+++.|++....... -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 46788888898887762221 46678999999999999775211 1244557999999999999887433221 125788
Q ss_pred ccEEECCCCcCccc-CCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcc-hhccCCCCCCEEEc
Q 045291 438 LKWLLLEGNRFVGE-IPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDLLQILDI 515 (682)
Q Consensus 438 L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L 515 (682)
|+.|.++.|.++.. +......+|+|+.|++..|...........-+..|++|+|++|++.+... .....++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 99999999998732 33455678999999999995332333344567889999999999875432 34677899999999
Q ss_pred cCCcCCCCcchhh-----ccCCCCCcEEECCCCcCCCCch-hhhhcCCCCCEEEccCccCccc
Q 045291 516 SDNNISGRLIPST-----FSNLKQIESLDLSYNKLNGKMP-HQLVELKTLEVFSVAYNNLSGE 572 (682)
Q Consensus 516 s~n~~~~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 572 (682)
+.+.+++...|++ -..+++|+.|++..|++..... ..+..+++|+.|.+..|++...
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 9999986444544 4678999999999999974322 4566788899999999998753
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.11 E-value=4.8e-12 Score=126.75 Aligned_cols=196 Identities=27% Similarity=0.389 Sum_probs=159.9
Q ss_pred CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN 415 (682)
Q Consensus 336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 415 (682)
.+..-...|++.|++. .+|..+.. +-.|+.+.+..|.+. .+|..+..+..|+.++++.|+++ .+|..++ .--|+
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLk 146 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLK 146 (722)
T ss_pred cccchhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcce
Confidence 3445567899999997 88887766 778999999999988 66778889999999999999998 8888887 45699
Q ss_pred EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCc
Q 045291 416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495 (682)
Q Consensus 416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 495 (682)
.|.+++|+++. .|..++..+.|..||.+.|.+. .+|..+.++.+|+.|.+..|++. .+|..+. .-.|..||++.|+
T Consensus 147 vli~sNNkl~~-lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk 222 (722)
T KOG0532|consen 147 VLIVSNNKLTS-LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK 222 (722)
T ss_pred eEEEecCcccc-CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence 99999999985 4555668899999999999987 57788899999999999999998 5566666 4468899999999
Q ss_pred CcCCcchhccCCCCCCEEEccCCcCCCCcchhhcc---CCCCCcEEECCCCc
Q 045291 496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFS---NLKQIESLDLSYNK 544 (682)
Q Consensus 496 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~---~l~~L~~L~l~~n~ 544 (682)
++ .+|..|..++.|++|.|.+|++.+ +|..+. ..-=-+.|+..-|+
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLqS--PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQS--PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCCC--ChHHHHhccceeeeeeecchhcc
Confidence 99 788899999999999999999985 554332 12223567777664
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.09 E-value=2e-11 Score=115.49 Aligned_cols=246 Identities=17% Similarity=0.129 Sum_probs=166.8
Q ss_pred CCCCCcEEeCCCCCcC--CCCccccccCCCCCCCEEecCCCCCCCccccCcc-------ccCCCCCCCEEeCCCCCCCcc
Q 045291 3 GLRKLKSFGLSGVGIR--DGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQ-------ELHNFTNLEYLTLDESSLHIS 73 (682)
Q Consensus 3 ~l~~L~~L~L~~~~~~--~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-------~l~~l~~L~~L~L~~n~~~~~ 73 (682)
.+..+++|+|++|.++ ....+...+.+.+.|+.-++|..--.......+. ++..+++|++|+||.|-+.-.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 4567889999999874 1124456677778888888887633222111122 345677899999998887644
Q ss_pred hhHH----HhhccCcceeeccCccccCc---c--------cCCCCCCCCCCCceeecCCCcccccc--chhHHHhhcCCC
Q 045291 74 LLQS----IASLFPSLKNLSISYCEVNG---V--------LRGQGFPSFKSLEHLHMSFAPIALNT--SFLQIIGESMPS 136 (682)
Q Consensus 74 ~~~~----~~~l~~L~~l~~~~~~~~~~---~--------~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~~l~~ 136 (682)
.+.. +.++..|++|.+.+|-.--. . ......+.-+.|+++..+.|+..-.+ .+...+.. .+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~-~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS-HPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh-ccc
Confidence 4333 45567788887776643110 0 01112456689999999986653322 23344444 899
Q ss_pred CcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc----cCchhhcCCCCCCEEeccCCccccccCCch----h
Q 045291 137 LKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG----SLPWCLANMTSLRILDVSFNQLTGSISSSP----L 208 (682)
Q Consensus 137 L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~----~ 208 (682)
|+.+.+..|.+......+...++..|++|++|+|+.|.++. .+...+..+++|++|++++|.+...- ... +
T Consensus 187 leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G-a~a~~~al 265 (382)
T KOG1909|consen 187 LEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG-AIAFVDAL 265 (382)
T ss_pred cceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc-HHHHHHHH
Confidence 99999999999544444555688999999999999998875 34567778899999999999887432 222 2
Q ss_pred -cccCCCcEEecCCCcCcccc---CccccccCCCCcEEEccCCccc
Q 045291 209 -VHLTSIEMLILSDNHFQIPI---SLEPLFNHSRLKIFYADNNELN 250 (682)
Q Consensus 209 -~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~~~~~ 250 (682)
...+.|+.|.+.+|.++... -.......+.|..|.+++|.+.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 23689999999999987321 1123455788999999999883
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.3e-10 Score=121.60 Aligned_cols=198 Identities=35% Similarity=0.466 Sum_probs=105.6
Q ss_pred EEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCC-CCCEEEccCCcCCCcCchhhhhCCCCCCEEEcc
Q 045291 342 FLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMK-FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420 (682)
Q Consensus 342 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 420 (682)
.++...+.+... ...+.. ++.++.|++.+|.++... .....+. +|+.|++++|++. .++.... .+++|+.|+++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~-~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLE-LTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccC-chhhhc-ccceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence 466666655312 222222 456777777777766433 2333442 6777777777765 5543332 46666666666
Q ss_pred CCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCc
Q 045291 421 NNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI 500 (682)
Q Consensus 421 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 500 (682)
+|++....+. ....++|+.|++++|.+. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.. .
T Consensus 172 ~N~l~~l~~~-~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~ 247 (394)
T COG4886 172 FNDLSDLPKL-LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-L 247 (394)
T ss_pred Cchhhhhhhh-hhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-c
Confidence 6666643332 114556666666666665 23333333444666666666433 333445555555555555555542 2
Q ss_pred chhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchh
Q 045291 501 PVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH 551 (682)
Q Consensus 501 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 551 (682)
+..+..+++++.|++++|+++. ++. ++.+.+++.|++++|.+....+.
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~--i~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISS--ISS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred cchhccccccceeccccccccc--ccc-ccccCccCEEeccCccccccchh
Confidence 3444555556666666666553 222 55555666666666655544443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=3e-10 Score=101.06 Aligned_cols=132 Identities=21% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCCCCcEEeCCCCCcCCCCccccccC-CCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhc
Q 045291 3 GLRKLKSFGLSGVGIRDGSKLLQSMG-SFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL 81 (682)
Q Consensus 3 ~l~~L~~L~L~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l 81 (682)
+..++|+|+|.+|.| ..+ +.++ .+.+|+.||||+|.|+.+ ..+..+++|+.|++++|.++.........+
T Consensus 17 n~~~~~~L~L~~n~I---~~I-e~L~~~l~~L~~L~Ls~N~I~~l-----~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQI---STI-ENLGATLDKLEVLDLSNNQITKL-----EGLPGLPRLKTLDLSNNRISSISEGLDKNL 87 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S-------TT----TT--EEE--SS---S-CHHHHHH-
T ss_pred ccccccccccccccc---ccc-cchhhhhcCCCEEECCCCCCccc-----cCccChhhhhhcccCCCCCCccccchHHhC
Confidence 455789999999998 323 3455 578999999999999986 367889999999999999985433323467
Q ss_pred cCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccC
Q 045291 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG 144 (682)
Q Consensus 82 ~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~ 144 (682)
+.|+++.+.+|.... +.+-..++.+++|++|++.+||+.-....-..+...+|+|+.||-..
T Consensus 88 p~L~~L~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 88 PNLQELYLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp TT--EEE-TTS---S-CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCEEECcCCcCCC-hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 888888887776532 33333477788888888888776544333333444488888887644
No 34
>PLN03150 hypothetical protein; Provisional
Probab=99.05 E-value=4.9e-10 Score=122.59 Aligned_cols=114 Identities=32% Similarity=0.483 Sum_probs=103.9
Q ss_pred CCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEEC
Q 045291 461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL 540 (682)
Q Consensus 461 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l 540 (682)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++++ .+|..++.+++|+.|+|
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEEEC
Confidence 37889999999999999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred CCCcCCCCchhhhhcC-CCCCEEEccCccCcccCCc
Q 045291 541 SYNKLNGKMPHQLVEL-KTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 541 ~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~~~ 575 (682)
++|++++.+|..+... .++..+++.+|+..|..|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 9999999999988764 4678899999998876554
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.8e-10 Score=118.16 Aligned_cols=178 Identities=33% Similarity=0.458 Sum_probs=85.2
Q ss_pred CCCCEEEccCCcCCCcCchhhhhCC-CCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEE
Q 045291 387 KFLQILDLSNNHLTGEIPEYLAVGC-VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGL 465 (682)
Q Consensus 387 ~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 465 (682)
+.++.|++.+|.++ .++.... .. .+|+.|++++|++.... ..+..+++|+.|++++|++.. ++......++|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccc-cchhhcccccccccchhhhh-hhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence 44555555555554 4444332 12 15555555555555321 233345555555555555542 23222245555555
Q ss_pred eccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcC
Q 045291 466 YLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545 (682)
Q Consensus 466 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 545 (682)
++++|.+. .+|.....+..|+++.+++|.+. ..+..+..+.++..+.+++|++.. .+..++.+++++.|++++|.+
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee--ccchhccccccceeccccccc
Confidence 55555554 33333333344555555555322 223334445555555555555542 244445555555555555555
Q ss_pred CCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291 546 NGKMPHQLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 546 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
+.... +..+.+++.+++++|.++...|
T Consensus 268 ~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 268 SSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccc--ccccCccCEEeccCccccccch
Confidence 53322 4455555555555555554333
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.03 E-value=5.4e-11 Score=109.78 Aligned_cols=130 Identities=26% Similarity=0.333 Sum_probs=82.5
Q ss_pred CCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEE
Q 045291 435 LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514 (682)
Q Consensus 435 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 514 (682)
-..|+++|+++|.++ .+..++.-.|.++.|+++.|.+. .+. .++.+++|+.|||++|.++... ..-..+-+.+.|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~-Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECV-GWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhh-hhHhhhcCEeeee
Confidence 345777777777766 45555666677777777777775 222 2666777777777777766332 2234556677777
Q ss_pred ccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch-hhhhcCCCCCEEEccCccCcc
Q 045291 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP-HQLVELKTLEVFSVAYNNLSG 571 (682)
Q Consensus 515 Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~ 571 (682)
|++|.+.. -..++.+-+|..||+++|+|..... ..++++|-|+++.+.+||+.+
T Consensus 359 La~N~iE~---LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIET---LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhh---hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 77777642 3455666677777777777764432 456667777777777777764
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.9e-09 Score=78.63 Aligned_cols=57 Identities=40% Similarity=0.603 Sum_probs=22.6
Q ss_pred CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCC
Q 045291 486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543 (682)
Q Consensus 486 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n 543 (682)
|++|++++|+++.+.+..|.++++|++|++++|+++. ..+.+|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCC
Confidence 3334444444433333334444444444444444432 33333444444444444443
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=2.4e-09 Score=78.12 Aligned_cols=61 Identities=38% Similarity=0.602 Sum_probs=56.5
Q ss_pred CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccC
Q 045291 508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569 (682)
Q Consensus 508 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 569 (682)
|+|++|++++|+++. ..+.+|.++++|++|++++|+++...++.|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~-i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE-ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc-cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 579999999999985 6678999999999999999999988889999999999999999975
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=6.2e-09 Score=116.38 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=24.2
Q ss_pred CcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCc
Q 045291 282 PKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG 327 (682)
Q Consensus 282 ~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 327 (682)
+.|....++|+.+.+..+.....+.+. ...+..++.+.+..+.+.
T Consensus 763 l~~~~f~~~L~~l~l~~~~~~e~~i~~-~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 763 LTWLLFAPHLTSLSLVSCRLLEDIIPK-LKALLELKELILPFNKLE 807 (889)
T ss_pred cchhhccCcccEEEEecccccccCCCH-HHHhhhcccEEecccccc
Confidence 334445677888888877655443333 344555554444443333
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=5.4e-10 Score=117.01 Aligned_cols=246 Identities=23% Similarity=0.231 Sum_probs=131.6
Q ss_pred cCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCE
Q 045291 312 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQI 391 (682)
Q Consensus 312 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 391 (682)
.+..++.+.+..|.+... ...+..+.+++.|++.+|.+.. +...+ ..+++|+.|++++|.|+... .+..++.|+.
T Consensus 70 ~l~~l~~l~l~~n~i~~~-~~~l~~~~~l~~l~l~~n~i~~-i~~~l-~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~ 144 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-LNHLSKLKSLEALDLYDNKIEK-IENLL-SSLVNLQVLDLSFNKITKLE--GLSTLTLLKE 144 (414)
T ss_pred HhHhHHhhccchhhhhhh-hcccccccceeeeeccccchhh-cccch-hhhhcchheecccccccccc--chhhccchhh
Confidence 344555555666655541 1224455666777777776652 22211 22566777777777666443 2344555666
Q ss_pred EEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291 392 LDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN 470 (682)
Q Consensus 392 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 470 (682)
|++++|.+. .+...- .+..|+.+++++|++..... . ...+.+++.+++.+|.+... ..+..+..+..+++..|
T Consensus 145 L~l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 145 LNLSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred heeccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 677777665 333321 25666666666666664433 1 23556666666666665432 22233334444456666
Q ss_pred cCCCCchhhhcCCCC--CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291 471 SLSGKIPRWLGNLTR--LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548 (682)
Q Consensus 471 ~~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 548 (682)
.+...-+ +..+.. |+.+++++|++... +..+..+..+..|++.+|++.. -..+...+.+..+....|++...
T Consensus 219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 219 KISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISN---LEGLERLPKLSELWLNDNKLALS 292 (414)
T ss_pred cceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccc---cccccccchHHHhccCcchhcch
Confidence 5542211 122222 66777777776632 2445556667777777776653 22344555666666666665522
Q ss_pred ---chhh-hhcCCCCCEEEccCccCcccCC
Q 045291 549 ---MPHQ-LVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 549 ---~~~~-l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
.... ....+.+..+.+.+|+.....+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhhhccccccccccccccccccCccccccc
Confidence 1111 3345666677777777665444
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.76 E-value=6.2e-09 Score=116.41 Aligned_cols=161 Identities=26% Similarity=0.292 Sum_probs=99.8
Q ss_pred CCCCCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhh
Q 045291 1 YGGLRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIAS 80 (682)
Q Consensus 1 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~ 80 (682)
|..++.|++|||++|.- ..++|..++.+-+|+||||+.+.|+.+ |..+++++.|.+|++..+......+.....
T Consensus 567 f~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L~~t~I~~L----P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDLSDTGISHL----PSGLGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred HhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccccCCCcccc----chHHHHHHhhheeccccccccccccchhhh
Confidence 45688888888888765 578888888888888888888888877 788888888888888887765555666666
Q ss_pred ccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCc----EEEccCCCCCCCCCCccc
Q 045291 81 LFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLK----YLSLSGSILGTNSSRILD 156 (682)
Q Consensus 81 l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~----~L~L~~~~l~~~~~~i~~ 156 (682)
+.+|+++.+...........-..+.++.+|+.+.... ... .+...+.. ++.|+ .+.+.++.... ..
T Consensus 641 L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~--~s~--~~~e~l~~-~~~L~~~~~~l~~~~~~~~~----~~- 710 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI--SSV--LLLEDLLG-MTRLRSLLQSLSIEGCSKRT----LI- 710 (889)
T ss_pred cccccEEEeeccccccchhhHHhhhcccchhhheeec--chh--HhHhhhhh-hHHHHHHhHhhhhcccccce----ee-
Confidence 8888888776554211111100144555555555533 111 11111111 23322 22322222211 22
Q ss_pred ccccCCCCCCEEEccCCCCcc
Q 045291 157 QGLCSLVHLQELRMADNDLRG 177 (682)
Q Consensus 157 ~~l~~l~~L~~L~L~~n~l~~ 177 (682)
..+..+.+|+.|.+.++.+..
T Consensus 711 ~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 711 SSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred cccccccCcceEEEEcCCCch
Confidence 267778888888888887753
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=1.6e-09 Score=113.46 Aligned_cols=224 Identities=25% Similarity=0.253 Sum_probs=104.2
Q ss_pred hcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCC
Q 045291 311 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ 390 (682)
Q Consensus 311 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 390 (682)
..+.+++.+++.+|.+..+... +..+++|+.|++++|.|+...+-. .++.|+.|++++|.|.... .+..++.|+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~l~---~l~~L~~L~l~~N~i~~~~--~~~~l~~L~ 165 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEGLS---TLTLLKELNLSGNLISDIS--GLESLKSLK 165 (414)
T ss_pred ccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccchh---hccchhhheeccCcchhcc--CCccchhhh
Confidence 3455566666666665553321 344556666666666655322221 1444666666666655321 233455566
Q ss_pred EEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCC--CCCEEecc
Q 045291 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS--SLEGLYLN 468 (682)
Q Consensus 391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~l~ 468 (682)
.+++++|.+. .+.......+.+++.+.+.+|.+..... +..+..+..+++..|.+...-+ +..+. .|+.++++
T Consensus 166 ~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~ 240 (414)
T KOG0531|consen 166 LLDLSYNRIV-DIENDELSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLS 240 (414)
T ss_pred cccCCcchhh-hhhhhhhhhccchHHHhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcc
Confidence 6666666554 3333101245556666666665543221 1123333334555555543211 11112 25566666
Q ss_pred CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC--cch-hhccCCCCCcEEECCCCcC
Q 045291 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR--LIP-STFSNLKQIESLDLSYNKL 545 (682)
Q Consensus 469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~--~~~-~~~~~l~~L~~L~l~~n~l 545 (682)
+|++. ..+..+..+..+..|++.+|++.... .+...+.+..+....|++... ... ......+.++...+..|.+
T Consensus 241 ~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 241 GNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred cCccc-cccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 66654 33234445555566666665554321 123344455555555554310 001 1133445555566666555
Q ss_pred CCC
Q 045291 546 NGK 548 (682)
Q Consensus 546 ~~~ 548 (682)
...
T Consensus 318 ~~~ 320 (414)
T KOG0531|consen 318 RKI 320 (414)
T ss_pred ccc
Confidence 543
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.59 E-value=2.9e-08 Score=92.10 Aligned_cols=86 Identities=24% Similarity=0.286 Sum_probs=56.0
Q ss_pred CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCcccc-CCCCCCCEEeCCCCCCCcchhH-HHhhc
Q 045291 4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL-HNFTNLEYLTLDESSLHISLLQ-SIASL 81 (682)
Q Consensus 4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~-~~~~l 81 (682)
++.++++||.+|.|+|-.++...+.++|+|++||||.|.+... ...+ --.++|++|-|.+..+.-...+ .+..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~----I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l 145 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD----IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL 145 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc----cccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence 4567788888888865556666777888888888888877654 3333 2466788888877776543322 23445
Q ss_pred cCcceeeccCcc
Q 045291 82 FPSLKNLSISYC 93 (682)
Q Consensus 82 ~~L~~l~~~~~~ 93 (682)
+.++++.++.|+
T Consensus 146 P~vtelHmS~N~ 157 (418)
T KOG2982|consen 146 PKVTELHMSDNS 157 (418)
T ss_pred hhhhhhhhccch
Confidence 555555555553
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.55 E-value=3.6e-09 Score=109.37 Aligned_cols=198 Identities=23% Similarity=0.252 Sum_probs=120.3
Q ss_pred CCCCCEEEccCCcCCCcC-chhhhhCCCCCCEEEccCCcCCCcccccCCCC-CCccEEECCCCcCc----------ccCC
Q 045291 386 MKFLQILDLSNNHLTGEI-PEYLAVGCVNLNSLALSNNNLQGHMFSRNFNL-TNLKWLLLEGNRFV----------GEIP 453 (682)
Q Consensus 386 l~~L~~L~l~~n~~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~----------~~~~ 453 (682)
+++++.+.+-.-.-.+.. |-.+| .+.+|++|.+.++.+... ..+..+ ..|+.|.- .|.+. +.+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~if-pF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIF-PFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceec-cccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccc
Confidence 344455544332221122 44555 578999999999887631 111111 12333322 22221 0111
Q ss_pred ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh-hccCC
Q 045291 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS-TFSNL 532 (682)
Q Consensus 454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~-~~~~l 532 (682)
.++ .+-.|...+.+.|.+. .+...++-++.|+.|+|++|++++.. .+..++.|+.|||++|.+.. +|. .-.++
T Consensus 159 ns~-~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc 232 (1096)
T KOG1859|consen 159 NSP-VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH--VPQLSMVGC 232 (1096)
T ss_pred cch-hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc--ccccchhhh
Confidence 111 1345677778888876 66777778888888888888887553 67778888888888888874 332 22334
Q ss_pred CCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC-cccccccccCcccccCCCCCCC
Q 045291 533 KQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP-EWTAQFATFNESSYEGNIFLCG 596 (682)
Q Consensus 533 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~~~~~~n~~~c~ 596 (682)
. |+.|.+++|.++.. .++.++.+|+.||+++|-+.+.-. ..+..+..+..+.++|||..|.
T Consensus 233 ~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred h-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 3 88888888888743 456778888888888887764211 1133456677788888887774
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=2.4e-09 Score=110.69 Aligned_cols=199 Identities=27% Similarity=0.254 Sum_probs=94.9
Q ss_pred CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhc---
Q 045291 5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASL--- 81 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l--- 81 (682)
+++++|.+-+..-.+... |-.+..|..|++|.|.++.++.... ...+. ..|+.|. -+|+++ .+-..+..+
T Consensus 84 qkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~L~~~~G--L~~lr--~qLe~LI-C~~Sl~-Al~~v~ascggd 156 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCDLSTAKG--LQELR--HQLEKLI-CHNSLD-ALRHVFASCGGD 156 (1096)
T ss_pred hhheeeeecccCCCCCCC-CceeccccceeeEEecCcchhhhhh--hHHHH--Hhhhhhh-hhccHH-HHHHHHHHhccc
Confidence 455566665554322122 6667778888888888887765410 11111 1233331 122221 111111111
Q ss_pred -------cCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCc
Q 045291 82 -------FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRI 154 (682)
Q Consensus 82 -------~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i 154 (682)
-+|.....+.|.. ..+ +.++.-++.|+.|+|+.|.. .. .+.+.. ++.|++|||+.|.+.. +
T Consensus 157 ~~ns~~Wn~L~~a~fsyN~L-~~m--D~SLqll~ale~LnLshNk~--~~--v~~Lr~-l~~LkhLDlsyN~L~~----v 224 (1096)
T KOG1859|consen 157 ISNSPVWNKLATASFSYNRL-VLM--DESLQLLPALESLNLSHNKF--TK--VDNLRR-LPKLKHLDLSYNCLRH----V 224 (1096)
T ss_pred cccchhhhhHhhhhcchhhH-HhH--HHHHHHHHHhhhhccchhhh--hh--hHHHHh-cccccccccccchhcc----c
Confidence 0122222222222 111 22355556666666666332 11 123333 6666666666666644 4
Q ss_pred ccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCc
Q 045291 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQ 225 (682)
Q Consensus 155 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~ 225 (682)
|.-....|+ |+.|++++|.++.. ..+.++.+|+.||+++|-|++.-.-..++.+..|+.|+|.+|++-
T Consensus 225 p~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 225 PQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 433333443 66666666665522 235556666666666666654322234555666666666666654
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=2.1e-08 Score=92.95 Aligned_cols=209 Identities=16% Similarity=0.146 Sum_probs=108.2
Q ss_pred CccEEEccCCcCCCCCC-hhhhhcCCCceEEEecCCcCCc--CCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291 339 RLRFLDVSNNNFQGHMP-VEIGDILPSLFSFNISTNALHG--SIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN 415 (682)
Q Consensus 339 ~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 415 (682)
.++-|.+.++.|...-. ..+...+..++++|+..|.|+. .+...+.++|.|++|+++.|++...+...- ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceE
Confidence 34455555555542222 1233446677777777777762 233445677777788887777763332221 2456777
Q ss_pred EEEccCCcCCC-cccccCCCCCCccEEECCCCcCccc--CCccccCC-CCCCEEeccCCcCCC--CchhhhcCCCCCCee
Q 045291 416 SLALSNNNLQG-HMFSRNFNLTNLKWLLLEGNRFVGE--IPQSLSKC-SSLEGLYLNNNSLSG--KIPRWLGNLTRLQYI 489 (682)
Q Consensus 416 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l-~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L 489 (682)
.|.+.+..+.- .....+..+|.++.|.++.|..... ........ +.++++....|...- ..-..-.-.|++..+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv 204 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV 204 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence 77777665542 2223344577777777777754321 11111111 244455554443210 000011223556666
Q ss_pred cCCCCcCcCCcc-hhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291 490 IMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548 (682)
Q Consensus 490 ~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 548 (682)
.+..|.+..... ..+..++.+-.|+|+.|+|.+...-+.+.++++|..|.++++++...
T Consensus 205 ~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 205 FVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred eeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 666665554322 23444555556666666665433335556666666666666666533
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.9e-09 Score=99.83 Aligned_cols=162 Identities=20% Similarity=0.150 Sum_probs=79.4
Q ss_pred CCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCc
Q 045291 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLE 111 (682)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~ 111 (682)
+|++||||...|+.... ..-++.|.+|+.|++.++.+.+.+...+.+...|+.++++.++-.++......+.+|+.|.
T Consensus 186 Rlq~lDLS~s~it~stl--~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTL--HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHH--HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 47777777776654310 1245667777777777777776666666666666666666665544333222345566666
Q ss_pred eeecCCCccccccchhHH-HhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCC-CcccCchhhcCCCCC
Q 045291 112 HLHMSFAPIALNTSFLQI-IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADND-LRGSLPWCLANMTSL 189 (682)
Q Consensus 112 ~L~l~~~~~~~~~~~~~~-l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L 189 (682)
.|++++ +...+..... +..--++|+.|+++++.-.-....+.. -...|++|.+|||+.|. ++......|.+++.|
T Consensus 264 ~LNlsW--c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 264 ELNLSW--CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hcCchH--hhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 666665 3322222111 111123555555555432000000110 11345555555555442 222222334445555
Q ss_pred CEEeccCCc
Q 045291 190 RILDVSFNQ 198 (682)
Q Consensus 190 ~~L~L~~n~ 198 (682)
++|.++.|.
T Consensus 341 ~~lSlsRCY 349 (419)
T KOG2120|consen 341 QHLSLSRCY 349 (419)
T ss_pred eeeehhhhc
Confidence 555555554
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.7e-09 Score=95.82 Aligned_cols=180 Identities=23% Similarity=0.185 Sum_probs=123.2
Q ss_pred CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCc-CCCCCChhhhhcCCCceEE
Q 045291 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN-FQGHMPVEIGDILPSLFSF 368 (682)
Q Consensus 290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L 368 (682)
.++.+|++...++..--..++..|.+|+.+.++++.+.+.....+....+|+.|+++.+. ++..-...++..++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 478899999888766566678889999999999999988777777888899999999874 3322234456668889999
Q ss_pred EecCCcCCcCCCc-ccC-CCCCCCEEEccCCcCC--CcCchhhhhCCCCCCEEEccCCc-CCCcccccCCCCCCccEEEC
Q 045291 369 NISTNALHGSIPS-SFG-NMKFLQILDLSNNHLT--GEIPEYLAVGCVNLNSLALSNNN-LQGHMFSRNFNLTNLKWLLL 443 (682)
Q Consensus 369 ~l~~n~i~~~~~~-~~~-~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 443 (682)
+++-|.+...... ... --++|+.|+++|+.-. ..--..+...+++|..||++.|. ++......|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 9998876533211 111 1256888888886422 11122334468888888888763 45445556667778888888
Q ss_pred CCCcCcccCCcc---ccCCCCCCEEeccCCc
Q 045291 444 EGNRFVGEIPQS---LSKCSSLEGLYLNNNS 471 (682)
Q Consensus 444 ~~n~~~~~~~~~---~~~l~~L~~L~l~~n~ 471 (682)
+.|-. +.|.. +...++|.+|++-++-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 77753 44543 3455777777776654
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=8.1e-08 Score=87.97 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=63.5
Q ss_pred ccccCCCCCCCEEecCCCCCCCccccCcc-ccCCCCCCCEEeCCCCCCC---cchhHHHhhccCcceeeccCccccCccc
Q 045291 24 LQSMGSFPSLNTLDLSYNNFTDIAITTTQ-ELHNFTNLEYLTLDESSLH---ISLLQSIASLFPSLKNLSISYCEVNGVL 99 (682)
Q Consensus 24 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 99 (682)
...+..+..++.+|||+|.|....+.... -+.+-.+|+..+++.-... ..+++.+.-+ .+
T Consensus 23 ~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~L----------------l~ 86 (388)
T COG5238 23 VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVML----------------LK 86 (388)
T ss_pred HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHH----------------HH
Confidence 34455577888888888888765321111 3455677777776643221 1222222111 11
Q ss_pred CCCCCCCCCCCceeecCCCccccccchhHHHh---hcCCCCcEEEccCCCCCC
Q 045291 100 RGQGFPSFKSLEHLHMSFAPIALNTSFLQIIG---ESMPSLKYLSLSGSILGT 149 (682)
Q Consensus 100 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~---~~l~~L~~L~L~~~~l~~ 149 (682)
++.+||+|+..+||. +++...+|+.+. ++-+.|.+|.+++|.++.
T Consensus 87 ---aLlkcp~l~~v~LSD--NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 87 ---ALLKCPRLQKVDLSD--NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred ---HHhcCCcceeeeccc--cccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 267889999999998 566555554432 237789999999888855
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=7.1e-08 Score=78.97 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=39.0
Q ss_pred CCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEE
Q 045291 460 SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLD 539 (682)
Q Consensus 460 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 539 (682)
..|...++++|.+....+..-...+..+.+++++|.|+ ..|..+..++.|+.|+++.|++.. .|..+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHhc
Confidence 34444455555554222222223334555555555555 223335555555555555555542 344444455555555
Q ss_pred CCCCcCC
Q 045291 540 LSYNKLN 546 (682)
Q Consensus 540 l~~n~l~ 546 (682)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555444
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.23 E-value=1.3e-07 Score=77.47 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=99.3
Q ss_pred CCCEEeccCCcCCCCchh---hhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291 461 SLEGLYLNNNSLSGKIPR---WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIES 537 (682)
Q Consensus 461 ~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~ 537 (682)
.+..+++++|++. -+++ .+.....|+..+|++|.+.+..+..-...+..+.|++++|.|+. +|..+..+++|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhh
Confidence 4566788888765 3343 34556778888999999996666655667789999999999985 7888999999999
Q ss_pred EECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccC-cccccCCCCCCCCC
Q 045291 538 LDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN-ESSYEGNIFLCGLP 598 (682)
Q Consensus 538 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~~~~~~n~~~c~~~ 598 (682)
|+++.|++. ..|+.+..+.++..|+..+|... .+|.. ...++.. ...+..+||.-+|+
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~d-l~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVD-LFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHH-HhccccHHHHHhcCCcccccCc
Confidence 999999999 67888888999999999999887 45542 2223322 23456667666554
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.13 E-value=2.9e-07 Score=89.73 Aligned_cols=234 Identities=20% Similarity=0.138 Sum_probs=121.7
Q ss_pred CCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCC-CCCccccCcccc-CCCCCCCEEeCCCCC-CCcchhHHH-hhc
Q 045291 6 KLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNN-FTDIAITTTQEL-HNFTNLEYLTLDESS-LHISLLQSI-ASL 81 (682)
Q Consensus 6 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l-~~l~~L~~L~L~~n~-~~~~~~~~~-~~l 81 (682)
.||+|.++++.--....+-.....+|++++|++.++. +++. ...++ .++.+|++|++..|. ++......+ ..+
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~---s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS---SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH---HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 4677777776431122333445678888888888775 2222 12223 357788888887743 444333322 456
Q ss_pred cCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCccccc---
Q 045291 82 FPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQG--- 158 (682)
Q Consensus 82 ~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~--- 158 (682)
++|.++.++++..++.-.....+.+++.++.+.+.+|- .............+..+..+++..|.. +.+.+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~~------lTD~~~~~ 288 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCNQ------LTDEDLWL 288 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhcc------ccchHHHH
Confidence 77777777777766553333335566667777666531 111111112222255566666666644 11111
Q ss_pred -ccCCCCCCEEEccCCCC-cccCchhh-cCCCCCCEEeccCCccccccCCchh-cccCCCcEEecCCCcCccccCcc-cc
Q 045291 159 -LCSLVHLQELRMADNDL-RGSLPWCL-ANMTSLRILDVSFNQLTGSISSSPL-VHLTSIEMLILSDNHFQIPISLE-PL 233 (682)
Q Consensus 159 -l~~l~~L~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~l~~~i~~~~~-~~l~~L~~L~L~~n~l~~~~~~~-~~ 233 (682)
-..+..|++|+.+++.- ++..-..+ .++++|+.|-+++++--+......+ .+.+.|+.+++..+.......+. .-
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 13456777777776543 22222233 3567777777777752112112222 34566777777666543221111 12
Q ss_pred ccCCCCcEEEccCCcc
Q 045291 234 FNHSRLKIFYADNNEL 249 (682)
Q Consensus 234 ~~~~~L~~L~l~~~~~ 249 (682)
.+++.|+.+.++.+..
T Consensus 369 ~~C~~lr~lslshce~ 384 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCEL 384 (483)
T ss_pred cCCchhccCChhhhhh
Confidence 3456666666665543
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.09 E-value=1.9e-07 Score=91.06 Aligned_cols=210 Identities=20% Similarity=0.145 Sum_probs=90.0
Q ss_pred ccCCCCCEEEcCCCC-CcCcCchHHHhcCCCCcEEEcCCCC-CcccCCC-CCCCCCCccEEEccCCc-CCCCCChhhhhc
Q 045291 286 YHQHDLEFVDLSHIK-MNGEFPTWLLENNAKLETLFLINDS-IGGPFRL-PIHPHRRLRFLDVSNNN-FQGHMPVEIGDI 361 (682)
Q Consensus 286 ~~~~~L~~L~ls~~~-~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~-~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~ 361 (682)
..+++++.|.+.++. +++..-..+...+++++++++..|. +++.... .-.++++|++|+++.+. +.+.--..+..+
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 466777777777775 3333334445567777777776632 2221111 11245666666666653 222222233344
Q ss_pred CCCceEEEecCCcCCcC--CCcccCCCCCCCEEEccCC-cCCCcCchhhhhCCCCCCEEEccCCcC-CCcccccC-CCCC
Q 045291 362 LPSLFSFNISTNALHGS--IPSSFGNMKFLQILDLSNN-HLTGEIPEYLAVGCVNLNSLALSNNNL-QGHMFSRN-FNLT 436 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~-~~l~ 436 (682)
+..++.+.+.+|.-.+. +...-..+..+.++++..| .+++.-...+..++.+|+.|+.+++.- +......+ .+.+
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 44555554444321110 0001122333444444443 222221122233455556665555432 22111111 2345
Q ss_pred CccEEECCCCcCccc--CCccccCCCCCCEEeccCCcCCC--CchhhhcCCCCCCeecCCCCc
Q 045291 437 NLKWLLLEGNRFVGE--IPQSLSKCSSLEGLYLNNNSLSG--KIPRWLGNLTRLQYIIMPNNH 495 (682)
Q Consensus 437 ~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~ 495 (682)
+|+.|.+.+|+..+. ....-.+++.|+.+++.++.... .+...-.+++.|+.+.+++|.
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce 383 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE 383 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh
Confidence 556665555542111 00111234555555555554321 111112334555555555443
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.94 E-value=4e-06 Score=77.14 Aligned_cols=240 Identities=21% Similarity=0.134 Sum_probs=124.8
Q ss_pred ccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCC---CCCCh------
Q 045291 286 YHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ---GHMPV------ 356 (682)
Q Consensus 286 ~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~---~~~~~------ 356 (682)
..+..++.+++|+|.|......|+.....+.+. |+..+++.-... +.++.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~---------------------L~vvnfsd~ftgr~kde~~~~L~~Ll 85 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRN---------------------LRVVNFSDAFTGRDKDELYSNLVMLL 85 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcc---------------------eeEeehhhhhhcccHHHHHHHHHHHH
Confidence 346778899999999877666665433333222 222222221100 01111
Q ss_pred -hhhhcCCCceEEEecCCcCCcCCCc----ccCCCCCCCEEEccCCcCCCcCch-----hhh--------hCCCCCCEEE
Q 045291 357 -EIGDILPSLFSFNISTNALHGSIPS----SFGNMKFLQILDLSNNHLTGEIPE-----YLA--------VGCVNLNSLA 418 (682)
Q Consensus 357 -~~~~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~-----~~~--------~~~~~L~~L~ 418 (682)
.+. .||.|+..++++|.+....|. .+++-+.|++|.+++|.+. .+.. .++ ..-|.|++.+
T Consensus 86 ~aLl-kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 86 KALL-KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHh-cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 111 255666666666655433332 2344455666666666543 2111 110 1245566666
Q ss_pred ccCCcCCCccc----ccCCCCCCccEEECCCCcCcccC-----CccccCCCCCCEEeccCCcCCCC----chhhhcCCCC
Q 045291 419 LSNNNLQGHMF----SRNFNLTNLKWLLLEGNRFVGEI-----PQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTR 485 (682)
Q Consensus 419 l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~ 485 (682)
...|++..... ..+..-.+|+.+.+..|.+...- -..+..+.+|+.||+.+|-++-. ....+...+.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 66666553221 12222346666777666654221 11223356777777777766522 2233344566
Q ss_pred CCeecCCCCcCcCCcchh----c--cCCCCCCEEEccCCcCCCCcchh------hccCCCCCcEEECCCCcCCCC
Q 045291 486 LQYIIMPNNHLEGPIPVE----F--CQLDLLQILDISDNNISGRLIPS------TFSNLKQIESLDLSYNKLNGK 548 (682)
Q Consensus 486 L~~L~L~~n~l~~~~~~~----~--~~l~~L~~L~Ls~n~~~~~~~~~------~~~~l~~L~~L~l~~n~l~~~ 548 (682)
|+.|.+.+|-++..-... | ...++|..|...+|.+.+..+.. .-.+++-|..|.+.+|.+...
T Consensus 244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 777777777666433322 2 23477778888887665422221 124678888899999998843
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.2e-05 Score=53.44 Aligned_cols=39 Identities=36% Similarity=0.592 Sum_probs=23.5
Q ss_pred CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCc
Q 045291 5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDI 46 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 46 (682)
++|++|++++|++ .++|..++++++|++|++++|+|+.+
T Consensus 1 ~~L~~L~l~~N~i---~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQI---TDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS----SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCC---cccCchHhCCCCCCEEEecCCCCCCC
Confidence 4566667776666 34555566666666666666666643
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=3e-06 Score=92.73 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=24.4
Q ss_pred cCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEc
Q 045291 287 HQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFL 321 (682)
Q Consensus 287 ~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l 321 (682)
.+|+|+.||.|+..+...+-+.+...-++|+.+..
T Consensus 248 ~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 248 VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred cCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 36688999999888877666665555566665543
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.88 E-value=2.5e-05 Score=69.00 Aligned_cols=126 Identities=25% Similarity=0.272 Sum_probs=81.2
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEcc
Q 045291 341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420 (682)
Q Consensus 341 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 420 (682)
+++++++.++. ..........+...+|+++|.+... ..|..++.|.+|.+.+|+|+ .+...+..-+++|+.|.+.
T Consensus 22 ~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred ccccccccccc--chhhccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 45566665543 1112333355777888888887633 35667788888888888887 6666666667788888888
Q ss_pred CCcCCCcc-cccCCCCCCccEEECCCCcCcccC---CccccCCCCCCEEeccCCc
Q 045291 421 NNNLQGHM-FSRNFNLTNLKWLLLEGNRFVGEI---PQSLSKCSSLEGLYLNNNS 471 (682)
Q Consensus 421 ~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~l~~n~ 471 (682)
+|++.... ...+..+|+|++|.+-+|++...- -..+..+++|+.||+.+=.
T Consensus 97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 88776321 234456778888888777765321 1345667777777776543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.7e-05 Score=52.64 Aligned_cols=38 Identities=42% Similarity=0.587 Sum_probs=32.6
Q ss_pred CCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCc
Q 045291 31 PSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHI 72 (682)
Q Consensus 31 ~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 72 (682)
++|++|++++|+|+.+ ++.++++++|++|++++|.++.
T Consensus 1 ~~L~~L~l~~N~i~~l----~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDL----PPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSH----GGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCccc----CchHhCCCCCCEEEecCCCCCC
Confidence 5799999999999988 6679999999999999999873
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.83 E-value=3.9e-05 Score=67.81 Aligned_cols=110 Identities=18% Similarity=0.179 Sum_probs=85.2
Q ss_pred CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291 134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS 213 (682)
Q Consensus 134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 213 (682)
..+...+||++|.+.. ++ .|..+++|..|.+.+|+|+.+.|.--.-+++|+.|.+.+|+|..--.-..+..+++
T Consensus 41 ~d~~d~iDLtdNdl~~----l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~ 114 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK----LD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPK 114 (233)
T ss_pred ccccceecccccchhh----cc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCc
Confidence 6678899999999854 33 57889999999999999998777766667899999999998873222345778899
Q ss_pred CcEEecCCCcCccccC--ccccccCCCCcEEEccCCcc
Q 045291 214 IEMLILSDNHFQIPIS--LEPLFNHSRLKIFYADNNEL 249 (682)
Q Consensus 214 L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~~~~~ 249 (682)
|+.|.+-+|+.+.... .-.+..+++|+.|++.+-..
T Consensus 115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999999998863221 12367889999999877543
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=9.3e-05 Score=74.57 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=29.9
Q ss_pred cCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291 312 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN 373 (682)
Q Consensus 312 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 373 (682)
.+.+++.|++++|.+.... .-..+|++|.+++|.-...+|..+ .++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 3466677777766655542 123356666666643323444433 235666666665
No 61
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.75 E-value=7.7e-05 Score=64.15 Aligned_cols=37 Identities=30% Similarity=0.521 Sum_probs=12.9
Q ss_pred cccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEc
Q 045291 381 SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419 (682)
Q Consensus 381 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 419 (682)
..|.++++|+.+.+..+ +. .++..++.++++++.+.+
T Consensus 29 ~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 29 NAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEE
T ss_pred hhccccccccccccccc-cc-ccceeeeecccccccccc
Confidence 34444444444444332 22 333334433434444444
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.74 E-value=6.6e-05 Score=64.56 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=30.6
Q ss_pred ccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCC
Q 045291 382 SFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSS 461 (682)
Q Consensus 382 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 461 (682)
.|.++++|+.+.+.. .+. .++...|.++++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 445555555555543 233 444444444545555555442 3333334444444444444433 222222333444444
Q ss_pred CCEEecc
Q 045291 462 LEGLYLN 468 (682)
Q Consensus 462 L~~L~l~ 468 (682)
|+.+++.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 4444443
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00013 Score=73.45 Aligned_cols=134 Identities=13% Similarity=0.134 Sum_probs=79.0
Q ss_pred CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCC-cCCCcccccCCCCCCccE
Q 045291 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN-NLQGHMFSRNFNLTNLKW 440 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~ 440 (682)
+++++.|++++|.++.. |. -.++|++|.+++|.-...+|..+ .++|+.|++++| .+. .. .+.|+.
T Consensus 51 ~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sL------P~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GL------PESVRS 116 (426)
T ss_pred hcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cc------ccccce
Confidence 67889999999877743 41 23468999998754333666543 357888888887 443 22 235777
Q ss_pred EECCCCcCcccCCccccC-CCCCCEEeccCCcCC--CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccC
Q 045291 441 LLLEGNRFVGEIPQSLSK-CSSLEGLYLNNNSLS--GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 517 (682)
Q Consensus 441 L~l~~n~~~~~~~~~~~~-l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 517 (682)
|+++.+.... +.. .++|+.|.+.+++.. ...|. .-.++|++|++++|... ..|..+. .+|+.|+++.
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 7776654431 111 235667777543211 01111 11257888888877765 3343333 5788888877
Q ss_pred Cc
Q 045291 518 NN 519 (682)
Q Consensus 518 n~ 519 (682)
+.
T Consensus 187 n~ 188 (426)
T PRK15386 187 EQ 188 (426)
T ss_pred cc
Confidence 63
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.62 E-value=5.8e-05 Score=82.84 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=91.5
Q ss_pred CCCcEEeCCCCCcCCCCccccccCC-CCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccC
Q 045291 5 RKLKSFGLSGVGIRDGSKLLQSMGS-FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP 83 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 83 (682)
.+|++|++++.... ...+|..++. +|+|+.|.+++-.+.... -.....++++|+.||+++++++.. ..+.++.+
T Consensus 122 ~nL~~LdI~G~~~~-s~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELF-SNGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchh-hccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccCc--HHHhcccc
Confidence 47888888887654 4566666544 889999988887665432 022455788899999988888643 66777777
Q ss_pred cceeeccCccccCc-ccCCCCCCCCCCCceeecCCCccccccchhH---HHhhcCCCCcEEEccCCCC
Q 045291 84 SLKNLSISYCEVNG-VLRGQGFPSFKSLEHLHMSFAPIALNTSFLQ---IIGESMPSLKYLSLSGSIL 147 (682)
Q Consensus 84 L~~l~~~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~l~~~l~~L~~L~L~~~~l 147 (682)
|+.|-+.+-.+... ...+ +-++++|++||+|..+......+.. ..+..+|+||.||.+++.+
T Consensus 197 Lq~L~mrnLe~e~~~~l~~--LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLID--LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HHHHhccCCCCCchhhHHH--HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 87777665554331 1112 6678999999999854332222222 2234589999999999887
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00033 Score=64.92 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=26.0
Q ss_pred CCCCCeecCCCC--cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291 483 LTRLQYIIMPNN--HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 483 l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
+++|+.|.++.| .+.+..+.....+++|++|++++|+|.-...-.-+..+.+|..|++.+|..+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 344444444444 2322222222333555555555555431001112233444555555555444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=3.5e-05 Score=71.37 Aligned_cols=101 Identities=27% Similarity=0.235 Sum_probs=55.8
Q ss_pred CCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcc-hhccCCCCCCEE
Q 045291 435 LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDLLQIL 513 (682)
Q Consensus 435 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 513 (682)
+.+.+.|+..+|.+.++ .....++.|+.|.|+-|.|+..-| +..|++|++|+|..|.|.+... .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556666666666543 334456666666666666654433 5566666666666666654322 224566666666
Q ss_pred EccCCcCCCCcch----hhccCCCCCcEEE
Q 045291 514 DISDNNISGRLIP----STFSNLKQIESLD 539 (682)
Q Consensus 514 ~Ls~n~~~~~~~~----~~~~~l~~L~~L~ 539 (682)
.|..|+-.+...+ ..+.-+++|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666654431111 2345555555554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=0.00014 Score=78.77 Aligned_cols=63 Identities=29% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCCceEEEecCCc-CCcCCCcccC-CCCCCCEEEccCCc-CCCcCchhhhhCCCCCCEEEccCCcC
Q 045291 362 LPSLFSFNISTNA-LHGSIPSSFG-NMKFLQILDLSNNH-LTGEIPEYLAVGCVNLNSLALSNNNL 424 (682)
Q Consensus 362 l~~L~~L~l~~n~-i~~~~~~~~~-~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~l 424 (682)
+++|+.++++.+. ++...-..+. .+++|++|.+.++. +++..-..+...++.|++|+++.|..
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555566665555 3322211221 25556666655554 34333344444555666666665543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=5.4e-05 Score=70.18 Aligned_cols=100 Identities=24% Similarity=0.257 Sum_probs=58.0
Q ss_pred CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCc-hhhhcCCCCCCee
Q 045291 411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKI-PRWLGNLTRLQYI 489 (682)
Q Consensus 411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L 489 (682)
+.+.++|+..+|.+.++. ....++.|+.|.|+-|.++.. ..+..|+.|++|+|..|.|.+.- -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 445566666666666432 223566677777777776543 34566677777777777665321 1234566777777
Q ss_pred cCCCCcCcCCcc-----hhccCCCCCCEEE
Q 045291 490 IMPNNHLEGPIP-----VEFCQLDLLQILD 514 (682)
Q Consensus 490 ~L~~n~l~~~~~-----~~~~~l~~L~~L~ 514 (682)
+|..|.=.+.-+ ..+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 776665443322 2245566666665
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.63 E-value=0.0014 Score=60.85 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=39.6
Q ss_pred CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCC--CCCCccccCccccCCCCCCCEEeCCCCCCCc-chhHHHhh
Q 045291 4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYN--NFTDIAITTTQELHNFTNLEYLTLDESSLHI-SLLQSIAS 80 (682)
Q Consensus 4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~ 80 (682)
+..|..|++.+..+.... .+-.+|+|++|.+|.| .++.-. .....++++|++|+++.|++.. .-......
T Consensus 42 ~~~le~ls~~n~gltt~~----~~P~Lp~LkkL~lsdn~~~~~~~l---~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT----NFPKLPKLKKLELSDNYRRVSGGL---EVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred ccchhhhhhhccceeecc----cCCCcchhhhhcccCCcccccccc---eehhhhCCceeEEeecCCccccccccchhhh
Confidence 344455555544442212 2334666677777766 333221 2233445677777777776652 11222334
Q ss_pred ccCcceeeccCcc
Q 045291 81 LFPSLKNLSISYC 93 (682)
Q Consensus 81 l~~L~~l~~~~~~ 93 (682)
+.+|..+++..|.
T Consensus 115 l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 115 LENLKSLDLFNCS 127 (260)
T ss_pred hcchhhhhcccCC
Confidence 4445555544444
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.00073 Score=73.07 Aligned_cols=114 Identities=21% Similarity=0.032 Sum_probs=50.4
Q ss_pred CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCC-CC-CCccccCccccCCCCCCCEEeCCCCC-CCcchhHHHhh
Q 045291 4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYN-NF-TDIAITTTQELHNFTNLEYLTLDESS-LHISLLQSIAS 80 (682)
Q Consensus 4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n-~i-~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~ 80 (682)
+++|+.|.+..+.-.....+-.....+++|+.|+++++ .. .............+.+|+.|+++++. ++......+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666666532101113345556666666666652 11 11100001123345666666666655 44444444432
Q ss_pred -ccCcceeeccCccccCcccCCCCCCCCCCCceeecCC
Q 045291 81 -LFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSF 117 (682)
Q Consensus 81 -l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 117 (682)
++.|+++.+..+..++...-......++.|++|++++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 4455555533333221111111133455566666655
No 71
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.84 E-value=0.0001 Score=77.27 Aligned_cols=191 Identities=26% Similarity=0.253 Sum_probs=87.9
Q ss_pred CCEEecCCCCCCCccccCc-cccCCCCCCCEEeCCCCCCCcchhHHHhh----c-cCcceeeccCccccCc----ccCCC
Q 045291 33 LNTLDLSYNNFTDIAITTT-QELHNFTNLEYLTLDESSLHISLLQSIAS----L-FPSLKNLSISYCEVNG----VLRGQ 102 (682)
Q Consensus 33 L~~L~Ls~n~i~~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~~~~----l-~~L~~l~~~~~~~~~~----~~~~~ 102 (682)
+.+|.|.+|.+..-..... ..+.....|..|++++|.+.+.....+.. . ..++++.+..|..... +.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~-- 166 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA-- 166 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH--
Confidence 5555566665554321111 13445556666666666554322222211 1 1222233333332211 111
Q ss_pred CCCCCCCCceeecCCCcccccc--chhHHHhh---cCCCCcEEEccCCCCCCCCCCcccccccCCCC-CCEEEccCCCCc
Q 045291 103 GFPSFKSLEHLHMSFAPIALNT--SFLQIIGE---SMPSLKYLSLSGSILGTNSSRILDQGLCSLVH-LQELRMADNDLR 176 (682)
Q Consensus 103 ~~~~l~~L~~L~l~~~~~~~~~--~~~~~l~~---~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~-L~~L~L~~n~l~ 176 (682)
.+.....++.++++.|...-.+ ..+..+.+ ...++++|++.+|.++.......+..+...+. +++|++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 1444556666666663322111 11122221 25566777777776643222333334555555 566777766665
Q ss_pred cc----CchhhcCC-CCCCEEeccCCccccccC---CchhcccCCCcEEecCCCcCc
Q 045291 177 GS----LPWCLANM-TSLRILDVSFNQLTGSIS---SSPLVHLTSIEMLILSDNHFQ 225 (682)
Q Consensus 177 ~~----~~~~~~~l-~~L~~L~L~~n~l~~~i~---~~~~~~l~~L~~L~L~~n~l~ 225 (682)
+. ....+..+ ..+++++++.|.+++.-. ...+..++.++.+.+++|++.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 32 22334444 566677777776653210 122334556666666666654
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.28 E-value=0.013 Score=32.05 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=4.8
Q ss_pred CcEEeCCCCCc
Q 045291 7 LKSFGLSGVGI 17 (682)
Q Consensus 7 L~~L~L~~~~~ 17 (682)
|++|+|++|++
T Consensus 2 L~~Ldls~n~l 12 (22)
T PF00560_consen 2 LEYLDLSGNNL 12 (22)
T ss_dssp ESEEEETSSEE
T ss_pred ccEEECCCCcC
Confidence 34444444444
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.99 E-value=0.0011 Score=69.85 Aligned_cols=182 Identities=26% Similarity=0.293 Sum_probs=81.8
Q ss_pred ceEEEecCCcCCcC----CCcccCCCCCCCEEEccCCcCCCcCchhhhhCC----CCCCEEEccCCcCCCcc----cccC
Q 045291 365 LFSFNISTNALHGS----IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGC----VNLNSLALSNNNLQGHM----FSRN 432 (682)
Q Consensus 365 L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~L~~L~l~~n~l~~~~----~~~~ 432 (682)
+..+.+.+|.+... +...+...+.|+.|++++|.+.+.....+..++ ..++.|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56667777776533 223445566777777777776533222222222 23444555555554321 2223
Q ss_pred CCCCCccEEECCCCcCccc----CCcccc----CCCCCCEEeccCCcCCCC----chhhhcCCCC-CCeecCCCCcCcCC
Q 045291 433 FNLTNLKWLLLEGNRFVGE----IPQSLS----KCSSLEGLYLNNNSLSGK----IPRWLGNLTR-LQYIIMPNNHLEGP 499 (682)
Q Consensus 433 ~~l~~L~~L~l~~n~~~~~----~~~~~~----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~-L~~L~L~~n~l~~~ 499 (682)
.....++.++++.|.+... ++..+. ...++++|.+.+|.++.. ....+...++ +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3345555566655554210 112222 244555555555554421 1112223333 44455555555432
Q ss_pred c----chhccCC-CCCCEEEccCCcCCCCc---chhhccCCCCCcEEECCCCcCC
Q 045291 500 I----PVEFCQL-DLLQILDISDNNISGRL---IPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 500 ~----~~~~~~l-~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
. ...+..+ ..++.++++.|.|+... ....+..++.++.+.++.|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 1 1122223 34455555555554311 1223344445555555555544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.59 E-value=0.033 Score=30.48 Aligned_cols=21 Identities=48% Similarity=0.596 Sum_probs=17.0
Q ss_pred CCCEEecCCCCCCCccccCccccCC
Q 045291 32 SLNTLDLSYNNFTDIAITTTQELHN 56 (682)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~ 56 (682)
+|++|||++|+++.+ |++|++
T Consensus 1 ~L~~Ldls~n~l~~i----p~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSI----PSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEE----GTTTTT
T ss_pred CccEEECCCCcCEeC----ChhhcC
Confidence 589999999999976 556654
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.85 E-value=0.11 Score=26.24 Aligned_cols=14 Identities=57% Similarity=0.721 Sum_probs=5.8
Q ss_pred CCCEEecCCCCCCC
Q 045291 32 SLNTLDLSYNNFTD 45 (682)
Q Consensus 32 ~L~~L~Ls~n~i~~ 45 (682)
+|++|+|++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 45555555555443
No 76
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.32 E-value=0.38 Score=27.48 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=7.9
Q ss_pred CCCcEEECCCCcCCCC
Q 045291 533 KQIESLDLSYNKLNGK 548 (682)
Q Consensus 533 ~~L~~L~l~~n~l~~~ 548 (682)
++|+.|+|++|+|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555533
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.32 E-value=0.38 Score=27.48 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=7.9
Q ss_pred CCCcEEECCCCcCCCC
Q 045291 533 KQIESLDLSYNKLNGK 548 (682)
Q Consensus 533 ~~L~~L~l~~n~l~~~ 548 (682)
++|+.|+|++|+|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555533
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.98 E-value=0.4 Score=27.35 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=13.5
Q ss_pred CCCCEEEccCCcCCCcCchhhh
Q 045291 387 KFLQILDLSNNHLTGEIPEYLA 408 (682)
Q Consensus 387 ~~L~~L~l~~n~~~~~~~~~~~ 408 (682)
++|++|++++|++. .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45667777777666 6666554
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.98 E-value=0.4 Score=27.35 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=13.5
Q ss_pred CCCCEEEccCCcCCCcCchhhh
Q 045291 387 KFLQILDLSNNHLTGEIPEYLA 408 (682)
Q Consensus 387 ~~L~~L~l~~n~~~~~~~~~~~ 408 (682)
++|++|++++|++. .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45667777777666 6666554
No 80
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.53 E-value=0.34 Score=60.22 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=31.5
Q ss_pred ECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291 539 DLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 539 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
||++|+|+.+.+..|..+++|+.|+|++|||.|.|.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 578899997777888889999999999999998777
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.47 E-value=0.13 Score=46.24 Aligned_cols=81 Identities=19% Similarity=0.121 Sum_probs=39.4
Q ss_pred CCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCc-chhc-cCCCCCCEEEccCCc-CCCCcchhhccCCCCCcE
Q 045291 461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPI-PVEF-CQLDLLQILDISDNN-ISGRLIPSTFSNLKQIES 537 (682)
Q Consensus 461 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~ 537 (682)
.++.++-+++.|..+--+.+.+++.++.|.+.+|.--+.. -+-+ ...++|+.|+|++|. ||+ .--..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~-~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD-GGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech-hHHHHHHHhhhhHH
Confidence 3456666666665444445555666666666555322110 0001 123556666666553 443 22334445555555
Q ss_pred EECCC
Q 045291 538 LDLSY 542 (682)
Q Consensus 538 L~l~~ 542 (682)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 55543
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.72 E-value=0.28 Score=44.14 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=19.2
Q ss_pred CCCCceeecCCCccccccchhHHHhhcCCCCcEEEccC
Q 045291 107 FKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSG 144 (682)
Q Consensus 107 l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~ 144 (682)
.++|+.|++++|+ .++..-...+.. +++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~-rIT~~GL~~L~~-lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCP-RITDGGLACLLK-LKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCC-eechhHHHHHHH-hhhhHHHHhcC
Confidence 3566666666653 233333444444 66666666554
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.17 E-value=0.031 Score=51.06 Aligned_cols=87 Identities=15% Similarity=0.096 Sum_probs=58.7
Q ss_pred CCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCC
Q 045291 432 NFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 511 (682)
Q Consensus 432 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 511 (682)
+......+.||++.|++. .+...|+.++.|..|+++.|.+. ..|..+.....+..+++..|..+ ..|..+...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 334556677777777654 33445666667777777777776 66667777777777777777666 5666677777777
Q ss_pred EEEccCCcCC
Q 045291 512 ILDISDNNIS 521 (682)
Q Consensus 512 ~L~Ls~n~~~ 521 (682)
.+++.+|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 7777777654
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.46 E-value=0.028 Score=51.35 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=38.3
Q ss_pred CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEc
Q 045291 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564 (682)
Q Consensus 485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 564 (682)
..+.||++.|++- .....|+-++.|..|+++.|++. ..|..+.....+..+++..|..+ ..|..+...+.++++++
T Consensus 43 r~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 43 RVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred eeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 3344444444433 22223444444555555555543 24444554555555555555444 33444445555555555
Q ss_pred cCccCc
Q 045291 565 AYNNLS 570 (682)
Q Consensus 565 ~~n~l~ 570 (682)
-+|++.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 555543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.13 E-value=0.56 Score=26.13 Aligned_cols=14 Identities=64% Similarity=0.890 Sum_probs=5.6
Q ss_pred CCCCEEecCCCCCC
Q 045291 31 PSLNTLDLSYNNFT 44 (682)
Q Consensus 31 ~~L~~L~Ls~n~i~ 44 (682)
++|++|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555554443
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.70 E-value=1.3 Score=25.37 Aligned_cols=16 Identities=44% Similarity=0.609 Sum_probs=10.7
Q ss_pred CCCCEEecCCCCCCCc
Q 045291 31 PSLNTLDLSYNNFTDI 46 (682)
Q Consensus 31 ~~L~~L~Ls~n~i~~~ 46 (682)
.+|++|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 5677777777776654
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=75.29 E-value=22 Score=36.81 Aligned_cols=17 Identities=35% Similarity=0.290 Sum_probs=12.9
Q ss_pred CCCCCEEecCCCCCCCc
Q 045291 30 FPSLNTLDLSYNNFTDI 46 (682)
Q Consensus 30 l~~L~~L~Ls~n~i~~~ 46 (682)
-+.++++|++.|.+..-
T Consensus 164 npr~r~~dls~npi~dk 180 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDK 180 (553)
T ss_pred cchhhhhccCCCccccc
Confidence 45688899999887664
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.27 E-value=20 Score=37.13 Aligned_cols=108 Identities=18% Similarity=0.080 Sum_probs=51.9
Q ss_pred CCCCcEEEccCCCCC-CCCCCcccccccCCCCCCEEEccCCCCcccCchhhc---CCCCCCEEeccCCccccccCCchhc
Q 045291 134 MPSLKYLSLSGSILG-TNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLA---NMTSLRILDVSFNQLTGSISSSPLV 209 (682)
Q Consensus 134 l~~L~~L~L~~~~l~-~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~i~~~~~~ 209 (682)
.+.+++++++.|.++ .....|+...+. +.++.|.+++.+...+. .-..+.+++++.|...+.+ +..+.
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~p-------l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddi-p~~~n 235 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGNP-------LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDI-PRTLN 235 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCCc-------cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccc-hhHHH
Confidence 566788888888773 322233321111 55555655533211111 1124677788887766555 33322
Q ss_pred c---cCCCcEEecCCCcCccccCcc--ccccCCCCcEEEccCCcc
Q 045291 210 H---LTSIEMLILSDNHFQIPISLE--PLFNHSRLKIFYADNNEL 249 (682)
Q Consensus 210 ~---l~~L~~L~L~~n~l~~~~~~~--~~~~~~~L~~L~l~~~~~ 249 (682)
. -.-++.++.+...+....... ..+..+++....++.|..
T Consensus 236 ~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 236 KKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred HhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 2 123556666555443211111 133445566655555543
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=70.35 E-value=2 Score=53.93 Aligned_cols=54 Identities=20% Similarity=0.373 Sum_probs=43.1
Q ss_pred EccCccCcccCCcccccccccCcccccCCCCCCCCCCC-------------------CCCCCCCCCCCCCCCC
Q 045291 563 SVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP-------------------ICISPATMPEASIGNE 616 (682)
Q Consensus 563 ~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~-------------------~~~~~~~~~~~~~~~~ 616 (682)
||++|+|+..-+..+..+.+++.+++.+|||.|+|.+. .|..|...++.++...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l 73 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGI 73 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccC
Confidence 68999999766667777889999999999999999763 4777877777655443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.20 E-value=4.2 Score=23.67 Aligned_cols=15 Identities=60% Similarity=0.837 Sum_probs=8.4
Q ss_pred CCCCEEecCCCCCCC
Q 045291 31 PSLNTLDLSYNNFTD 45 (682)
Q Consensus 31 ~~L~~L~Ls~n~i~~ 45 (682)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 355666666665543
No 91
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=54.20 E-value=9.5 Score=21.81 Aligned_cols=16 Identities=44% Similarity=0.742 Sum_probs=11.6
Q ss_pred CCCCEEecCCCCCCCc
Q 045291 31 PSLNTLDLSYNNFTDI 46 (682)
Q Consensus 31 ~~L~~L~Ls~n~i~~~ 46 (682)
++|++|++++|+++..
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 4677788888877765
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=47.11 E-value=15 Score=38.88 Aligned_cols=87 Identities=23% Similarity=0.134 Sum_probs=48.3
Q ss_pred HhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCC--CCCCEEeccCCccccccC--C
Q 045291 130 IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANM--TSLRILDVSFNQLTGSIS--S 205 (682)
Q Consensus 130 l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~i~--~ 205 (682)
...+.+.+..++|++|.+-.. ..+.. --..-|+|+.|+|++|.........+.++ ..|++|-+.+|.+..... .
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~L-d~~ss-lsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s 290 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHL-DALSS-LSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRS 290 (585)
T ss_pred hhcCCcceeeeecccchhhch-hhhhH-HHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhH
Confidence 344477788888888887220 00111 11234788888888883222222233332 467888888888764431 1
Q ss_pred chhc----ccCCCcEEe
Q 045291 206 SPLV----HLTSIEMLI 218 (682)
Q Consensus 206 ~~~~----~l~~L~~L~ 218 (682)
..+. .+|+|..||
T Consensus 291 ~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 291 EYVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHHhcchheeec
Confidence 1222 467777665
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.98 E-value=20 Score=20.29 Aligned_cols=11 Identities=55% Similarity=0.661 Sum_probs=6.4
Q ss_pred CCCCEEecCCC
Q 045291 31 PSLNTLDLSYN 41 (682)
Q Consensus 31 ~~L~~L~Ls~n 41 (682)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45556666655
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.91 E-value=13 Score=39.18 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=37.6
Q ss_pred CCCCCCCEEecCCCCCCCccccCcccc-CCCCCCCEEeCCCC--CCCcchhHHHhhccCcceeeccCccccC
Q 045291 28 GSFPSLNTLDLSYNNFTDIAITTTQEL-HNFTNLEYLTLDES--SLHISLLQSIASLFPSLKNLSISYCEVN 96 (682)
Q Consensus 28 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~l~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 96 (682)
.++|.+..++|++|++..+.. ..++ ...++|..|+|++| .+.....-.-.+..+|+++.+-+|...+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~--~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDA--LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhh--hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456677777777777665531 1122 34677777777777 3322211111233467777777776654
No 95
>PF15102 TMEM154: TMEM154 protein family
Probab=29.97 E-value=35 Score=29.18 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=3.8
Q ss_pred eeeEEecccc
Q 045291 645 VLYVNSYWRR 654 (682)
Q Consensus 645 ~~~~~~~~~~ 654 (682)
+++++++||.
T Consensus 78 lv~~~kRkr~ 87 (146)
T PF15102_consen 78 LVIYYKRKRT 87 (146)
T ss_pred heeEEeeccc
Confidence 3333344433
No 96
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=28.07 E-value=22 Score=29.27 Aligned_cols=29 Identities=17% Similarity=0.155 Sum_probs=16.0
Q ss_pred hhhhhhHhhhhheeeEEecccceeEEEee
Q 045291 633 TSYIIVIFGIVIVLYVNSYWRRRWFYFVE 661 (682)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (682)
+++.+++++..+.+++++|.|++.....+
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~~~~~~ 135 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTKLPLQD 135 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeecccCchhh
Confidence 33444444555556666777766655443
No 97
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=27.07 E-value=42 Score=28.97 Aligned_cols=6 Identities=17% Similarity=0.191 Sum_probs=2.2
Q ss_pred hhhhhh
Q 045291 629 ITFTTS 634 (682)
Q Consensus 629 ~~~~~~ 634 (682)
++++++
T Consensus 52 IGvVVG 57 (154)
T PF04478_consen 52 IGVVVG 57 (154)
T ss_pred EEEEec
Confidence 333333
No 98
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=23.71 E-value=77 Score=31.64 Aligned_cols=10 Identities=10% Similarity=0.152 Sum_probs=3.8
Q ss_pred eeeEEecccc
Q 045291 645 VLYVNSYWRR 654 (682)
Q Consensus 645 ~~~~~~~~~~ 654 (682)
.+.+.|++.+
T Consensus 291 aYli~Rrr~~ 300 (306)
T PF01299_consen 291 AYLIGRRRSR 300 (306)
T ss_pred hheeEecccc
Confidence 3333343333
Done!