Query 045291
Match_columns 682
No_of_seqs 395 out of 4465
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 20:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045291.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045291hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-65 5.9E-70 580.7 42.2 573 1-602 96-748 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.9E-61 9.9E-66 546.1 41.3 565 5-595 50-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-57 6.3E-62 511.0 45.6 568 8-599 7-627 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-54 5.4E-59 487.1 47.0 588 5-621 25-670 (680)
5 3j0a_A TOLL-like receptor 5; m 100.0 7.5E-55 2.6E-59 498.7 36.7 559 8-621 7-607 (844)
6 3t6q_A CD180 antigen; protein- 100.0 5.9E-54 2E-58 476.1 41.0 539 8-598 15-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2E-53 6.8E-58 471.8 37.3 541 7-599 13-563 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.6E-52 5.6E-57 464.5 38.6 519 5-575 33-565 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.5E-51 5.3E-56 471.3 36.8 513 4-575 23-565 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-51 9.1E-56 454.8 32.2 522 5-575 32-563 (606)
11 2z63_A TOLL-like receptor 4, v 100.0 5.7E-47 1.9E-51 417.3 34.4 517 7-575 9-536 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 2.3E-46 7.8E-51 412.4 32.1 514 32-600 8-537 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-45 3.9E-50 404.7 29.4 493 4-575 4-515 (549)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-44 6E-49 395.3 31.1 482 63-598 10-514 (549)
15 4eco_A Uncharacterized protein 100.0 9.1E-46 3.1E-50 409.4 20.9 387 126-598 198-630 (636)
16 4g8a_A TOLL-like receptor 4; l 100.0 5.1E-44 1.7E-48 399.4 34.9 544 21-617 44-622 (635)
17 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-44 1.6E-48 388.9 28.6 280 284-574 185-485 (520)
18 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-43 1.6E-47 391.5 32.0 544 5-600 52-612 (635)
19 2z7x_B TOLL-like receptor 1, v 100.0 9.4E-44 3.2E-48 386.4 25.2 465 8-550 3-485 (520)
20 4ecn_A Leucine-rich repeat pro 100.0 5.6E-42 1.9E-46 384.4 30.6 280 284-593 568-863 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 1.3E-41 4.4E-46 381.5 25.9 387 92-571 435-865 (876)
22 4eco_A Uncharacterized protein 100.0 2.5E-41 8.6E-46 373.9 26.8 414 135-596 81-602 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.9E-41 1.7E-45 368.0 27.4 460 30-574 30-514 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.4E-40 4.8E-45 364.3 25.6 466 4-550 30-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 6.1E-39 2.1E-43 342.7 27.9 370 163-575 30-413 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.1E-37 3.8E-42 332.9 27.0 387 165-599 12-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.3E-36 1.8E-40 316.6 26.5 417 57-595 10-430 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 6.5E-36 2.2E-40 315.9 23.4 426 30-580 10-439 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 4.9E-35 1.7E-39 314.0 29.1 310 284-598 51-360 (477)
30 1o6v_A Internalin A; bacterial 100.0 3.6E-34 1.2E-38 305.7 34.8 345 134-571 45-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 2E-33 6.9E-38 299.9 34.1 345 106-521 44-388 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 1.2E-34 4.1E-39 311.0 24.6 307 289-599 32-338 (477)
33 3o6n_A APL1; leucine-rich repe 100.0 1.4E-33 4.7E-38 294.3 26.3 266 286-599 114-379 (390)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6.6E-33 2.3E-37 293.2 27.5 355 104-575 38-392 (457)
35 3oja_B Anopheles plasmodium-re 100.0 1.1E-32 3.7E-37 303.3 26.0 265 286-598 120-384 (597)
36 3bz5_A Internalin-J, INLJ; leu 100.0 7.8E-32 2.7E-36 284.9 29.6 351 129-594 37-387 (457)
37 1ogq_A PGIP-2, polygalacturona 100.0 7E-33 2.4E-37 278.8 19.4 259 338-602 50-312 (313)
38 3o6n_A APL1; leucine-rich repe 100.0 2.9E-32 1E-36 284.3 24.7 310 134-547 44-353 (390)
39 4fmz_A Internalin; leucine ric 100.0 4.8E-31 1.6E-35 270.7 32.5 307 183-570 40-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 5.6E-31 1.9E-35 270.2 30.9 304 134-546 43-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 6.6E-31 2.3E-35 289.0 26.0 295 282-598 68-362 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-31 1.5E-35 265.7 13.1 255 314-574 50-308 (313)
43 1xku_A Decorin; proteoglycan, 100.0 5.1E-29 1.8E-33 253.4 28.4 268 290-567 53-329 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 8.2E-33 2.8E-37 295.8 0.1 390 134-572 2-442 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-29 7.6E-34 256.2 24.3 288 290-592 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 8.1E-29 2.8E-33 251.9 28.0 288 290-591 32-329 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 3.8E-29 1.3E-33 254.5 23.9 269 289-568 54-331 (332)
48 3zyj_A Leucine-rich repeat-con 100.0 7E-29 2.4E-33 262.7 23.6 252 315-574 44-296 (440)
49 3zyi_A Leucine-rich repeat-con 100.0 8.9E-29 3.1E-33 262.9 23.3 252 315-574 55-307 (452)
50 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-31 5.9E-36 285.5 -0.0 355 187-572 3-413 (461)
51 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.6E-33 248.3 18.1 251 317-574 10-265 (306)
52 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.8E-33 248.1 15.5 248 292-547 10-262 (306)
53 1ozn_A Reticulon 4 receptor; N 100.0 3.9E-28 1.3E-32 241.4 19.0 248 341-595 14-262 (285)
54 2z80_A TOLL-like receptor 2, v 100.0 2.1E-28 7.3E-33 251.2 16.8 282 288-575 30-319 (353)
55 3ogk_B Coronatine-insensitive 100.0 2E-29 6.9E-34 278.5 7.7 439 23-543 65-548 (592)
56 3zyj_A Leucine-rich repeat-con 100.0 3.5E-27 1.2E-31 249.7 23.5 251 340-598 45-296 (440)
57 2z80_A TOLL-like receptor 2, v 100.0 5.5E-28 1.9E-32 248.2 16.8 280 312-598 29-318 (353)
58 3zyi_A Leucine-rich repeat-con 100.0 4.1E-27 1.4E-31 250.1 24.0 228 314-546 75-303 (452)
59 3ogk_B Coronatine-insensitive 100.0 3.2E-29 1.1E-33 276.9 6.7 383 161-572 110-528 (592)
60 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-26 3.9E-31 230.7 20.3 250 337-590 31-283 (285)
61 4fcg_A Uncharacterized protein 99.9 2E-26 6.8E-31 233.0 20.3 225 338-570 81-314 (328)
62 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-28 2E-32 243.7 5.8 240 336-592 32-273 (317)
63 4fcg_A Uncharacterized protein 99.9 3.3E-26 1.1E-30 231.4 17.9 224 362-592 80-312 (328)
64 3oja_A Leucine-rich immune mol 99.9 1.3E-26 4.5E-31 247.2 11.1 247 336-599 32-287 (487)
65 1wwl_A Monocyte differentiatio 99.9 4.8E-27 1.6E-31 236.4 6.9 249 311-571 40-310 (312)
66 2z62_A TOLL-like receptor 4, v 99.9 3.8E-25 1.3E-29 218.6 19.4 227 342-575 11-242 (276)
67 2p1m_B Transport inhibitor res 99.9 6.4E-28 2.2E-32 266.7 -1.6 229 337-567 288-541 (594)
68 3o53_A Protein LRIM1, AGAP0063 99.9 6.1E-27 2.1E-31 236.2 4.8 266 291-574 12-280 (317)
69 2o6q_A Variable lymphocyte rec 99.9 2E-24 7E-29 212.4 21.6 208 363-575 16-223 (270)
70 2p1m_B Transport inhibitor res 99.9 8.4E-28 2.9E-32 265.7 -4.0 207 287-495 312-542 (594)
71 2o6q_A Variable lymphocyte rec 99.9 4.3E-24 1.5E-28 210.0 22.5 203 339-547 17-219 (270)
72 3g06_A SSPH2 (leucine-rich rep 99.9 9.1E-24 3.1E-28 229.5 27.1 248 289-581 61-308 (622)
73 1p9a_G Platelet glycoprotein I 99.9 1.6E-24 5.5E-29 214.8 18.9 205 361-574 8-212 (290)
74 1wwl_A Monocyte differentiatio 99.9 2.8E-26 9.6E-31 230.7 5.3 247 336-594 41-309 (312)
75 2z62_A TOLL-like receptor 4, v 99.9 2.2E-24 7.7E-29 213.1 18.5 225 368-598 12-241 (276)
76 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-23 1.3E-27 224.6 28.7 227 290-557 82-308 (622)
77 3oja_A Leucine-rich immune mol 99.9 2.9E-25 1E-29 236.8 11.5 244 315-575 35-287 (487)
78 1p9a_G Platelet glycoprotein I 99.9 2.4E-23 8.4E-28 206.2 20.7 200 337-546 9-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 5.4E-23 1.8E-27 202.4 17.9 206 362-580 40-245 (272)
80 3m19_A Variable lymphocyte rec 99.9 1.5E-22 5.2E-27 196.6 18.2 183 388-575 15-197 (251)
81 3rfs_A Internalin B, repeat mo 99.9 9.5E-22 3.2E-26 193.4 19.9 204 364-575 20-223 (272)
82 4glp_A Monocyte differentiatio 99.9 4.1E-22 1.4E-26 200.2 16.5 227 338-571 64-308 (310)
83 2xwt_C Thyrotropin receptor; s 99.9 3.4E-22 1.2E-26 192.7 13.4 197 363-567 31-236 (239)
84 3m19_A Variable lymphocyte rec 99.9 4.9E-21 1.7E-25 186.0 18.9 181 412-596 14-194 (251)
85 3goz_A Leucine-rich repeat-con 99.9 9.2E-23 3.1E-27 209.7 6.7 255 293-548 2-299 (362)
86 3goz_A Leucine-rich repeat-con 99.9 1.3E-22 4.6E-27 208.5 7.6 256 318-574 2-301 (362)
87 1h6u_A Internalin H; cell adhe 99.9 1.3E-20 4.4E-25 188.6 21.8 192 362-571 40-231 (308)
88 2ast_B S-phase kinase-associat 99.9 3.9E-22 1.3E-26 203.3 8.5 256 290-579 48-315 (336)
89 2xwt_C Thyrotropin receptor; s 99.9 3E-21 1E-25 186.1 13.5 196 339-543 32-236 (239)
90 2ast_B S-phase kinase-associat 99.9 1.6E-22 5.6E-27 206.1 4.8 246 339-594 48-306 (336)
91 4glp_A Monocyte differentiatio 99.9 2.4E-21 8.3E-26 194.6 13.1 227 290-546 65-307 (310)
92 2ca6_A RAN GTPase-activating p 99.8 3.3E-22 1.1E-26 207.7 6.0 245 310-574 28-320 (386)
93 1h6u_A Internalin H; cell adhe 99.8 2.5E-20 8.6E-25 186.5 18.5 192 337-547 40-231 (308)
94 4ay9_X Follicle-stimulating ho 99.8 5.2E-21 1.8E-25 195.5 13.7 242 317-569 12-258 (350)
95 2ca6_A RAN GTPase-activating p 99.8 4.1E-22 1.4E-26 207.1 5.5 244 353-597 23-319 (386)
96 2v9t_B SLIT homolog 2 protein 99.8 2.5E-20 8.6E-25 176.5 12.2 156 415-574 14-169 (220)
97 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.6E-24 171.1 15.8 179 390-580 10-188 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.1E-19 3.9E-24 185.5 15.8 240 292-543 12-256 (350)
99 2o6s_A Variable lymphocyte rec 99.8 1.5E-19 5.2E-24 170.0 14.5 162 388-558 29-190 (208)
100 2xot_A Amphoterin-induced prot 99.8 1.1E-19 3.8E-24 186.4 14.4 180 390-574 21-206 (361)
101 2v9t_B SLIT homolog 2 protein 99.8 4.5E-19 1.5E-23 167.9 15.6 153 390-547 14-166 (220)
102 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-19 4E-24 171.9 11.6 157 414-574 13-170 (220)
103 2xot_A Amphoterin-induced prot 99.8 1.9E-19 6.5E-24 184.6 13.3 181 414-598 20-206 (361)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 5.7E-19 1.9E-23 167.2 15.6 155 390-549 14-169 (220)
105 3cvr_A Invasion plasmid antige 99.8 4.8E-19 1.6E-23 190.0 16.4 186 339-555 60-252 (571)
106 3e6j_A Variable lymphocyte rec 99.8 2E-18 6.8E-23 164.6 16.7 157 414-575 21-177 (229)
107 1h6t_A Internalin B; cell adhe 99.8 5.2E-18 1.8E-22 168.1 18.2 171 385-571 44-214 (291)
108 3e6j_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 162.7 16.1 157 437-598 20-176 (229)
109 3cvr_A Invasion plasmid antige 99.8 4.4E-18 1.5E-22 182.6 16.6 184 364-577 60-250 (571)
110 1h6t_A Internalin B; cell adhe 99.8 7.6E-18 2.6E-22 166.9 15.7 170 362-547 45-214 (291)
111 1m9s_A Internalin B; cell inva 99.7 2.6E-17 8.9E-22 178.7 17.9 189 340-547 23-211 (605)
112 1m9s_A Internalin B; cell inva 99.7 4E-17 1.4E-21 177.3 16.5 189 316-522 23-211 (605)
113 4ezg_A Putative uncharacterize 99.7 3.4E-17 1.1E-21 152.3 12.4 152 384-545 41-193 (197)
114 1w8a_A SLIT protein; signaling 99.7 2.5E-17 8.5E-22 152.3 11.0 132 439-574 11-143 (192)
115 4ezg_A Putative uncharacterize 99.7 6.4E-17 2.2E-21 150.4 13.8 150 411-569 43-193 (197)
116 1xeu_A Internalin C; cellular 99.7 2.3E-17 8E-22 160.7 9.9 148 411-572 40-187 (263)
117 2wfh_A SLIT homolog 2 protein 99.7 6.6E-17 2.2E-21 149.3 11.1 167 439-618 13-179 (193)
118 1w8a_A SLIT protein; signaling 99.7 1.7E-16 5.9E-21 146.6 12.1 174 415-597 11-186 (192)
119 3sb4_A Hypothetical leucine ri 99.7 2.8E-17 9.5E-22 166.3 7.1 284 288-584 24-324 (329)
120 4fdw_A Leucine rich hypothetic 99.7 1.3E-15 4.6E-20 157.0 19.2 266 288-570 112-383 (401)
121 1xeu_A Internalin C; cellular 99.7 7.6E-17 2.6E-21 157.0 9.3 167 365-548 21-187 (263)
122 3sb4_A Hypothetical leucine ri 99.7 9.9E-17 3.4E-21 162.2 9.2 264 313-592 24-308 (329)
123 2wfh_A SLIT homolog 2 protein 99.7 5.9E-16 2E-20 142.9 13.4 127 415-546 13-139 (193)
124 1dce_A Protein (RAB geranylger 99.7 3.6E-19 1.2E-23 192.2 -9.7 202 336-563 347-566 (567)
125 2ell_A Acidic leucine-rich nuc 99.6 6.4E-16 2.2E-20 139.6 11.6 133 436-570 24-160 (168)
126 4fs7_A Uncharacterized protein 99.6 9.3E-15 3.2E-19 151.7 21.6 237 284-538 157-393 (394)
127 4fdw_A Leucine rich hypothetic 99.6 3.8E-15 1.3E-19 153.6 17.7 248 283-546 130-383 (401)
128 2je0_A Acidic leucine-rich nuc 99.6 7.9E-16 2.7E-20 136.0 10.4 128 436-565 17-148 (149)
129 4b8c_D Glucose-repressible alc 99.6 9.2E-17 3.1E-21 179.1 3.6 180 379-570 216-404 (727)
130 2o6r_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 136.2 13.3 134 438-575 9-142 (177)
131 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.9E-20 136.8 10.8 134 411-547 23-161 (168)
132 1dce_A Protein (RAB geranylger 99.6 1.2E-17 4E-22 180.4 -4.3 109 461-575 442-551 (567)
133 2je0_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 131.5 10.4 129 411-542 16-149 (149)
134 4fs7_A Uncharacterized protein 99.6 9E-14 3.1E-18 144.2 20.1 332 98-513 62-393 (394)
135 2o6r_A Variable lymphocyte rec 99.6 3.5E-14 1.2E-18 129.4 14.9 132 415-550 10-141 (177)
136 4b8c_D Glucose-repressible alc 99.6 1.7E-15 5.8E-20 168.9 5.5 188 363-567 173-369 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.2E-14 7.4E-19 130.5 9.4 131 434-570 17-153 (176)
138 3g39_A Variable lymphocyte rec 99.5 3.3E-14 1.1E-18 128.2 9.4 110 462-575 11-120 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.5 7.4E-14 2.5E-18 127.0 9.6 133 383-520 15-152 (176)
140 2r9u_A Variable lymphocyte rec 99.5 1E-13 3.5E-18 125.3 9.7 109 463-575 15-123 (174)
141 1ds9_A Outer arm dynein; leuci 99.4 1E-15 3.5E-20 142.4 -7.2 111 432-548 44-155 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 3.1E-15 1.1E-19 139.1 -5.4 145 437-587 19-180 (198)
143 3g39_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 119.1 10.4 110 485-598 10-119 (170)
144 4gt6_A Cell surface protein; l 99.4 3E-11 1E-15 125.2 23.7 135 403-545 256-390 (394)
145 2r9u_A Variable lymphocyte rec 99.4 2.3E-12 7.9E-17 116.4 10.5 109 486-598 14-122 (174)
146 2ifg_A High affinity nerve gro 99.3 1.2E-12 4.2E-17 133.4 9.1 102 441-546 13-116 (347)
147 4gt6_A Cell surface protein; l 99.3 7E-11 2.4E-15 122.4 21.9 137 425-569 254-390 (394)
148 3un9_A NLR family member X1; l 99.3 1.5E-13 5.2E-18 140.3 -1.7 94 460-553 155-259 (372)
149 3un9_A NLR family member X1; l 99.3 4.5E-13 1.5E-17 136.8 1.1 161 362-522 71-253 (372)
150 2ifg_A High affinity nerve gro 99.2 6.1E-11 2.1E-15 120.7 9.6 132 463-598 11-145 (347)
151 4h09_A Hypothetical leucine ri 99.1 5.8E-09 2E-13 107.4 22.6 145 333-484 212-356 (379)
152 4h09_A Hypothetical leucine ri 99.1 4.9E-09 1.7E-13 108.0 21.6 79 134-222 45-123 (379)
153 2ra8_A Uncharacterized protein 98.8 7.6E-09 2.6E-13 104.4 7.6 84 483-568 251-341 (362)
154 2ra8_A Uncharacterized protein 98.7 5.1E-09 1.8E-13 105.7 4.9 86 134-223 251-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 6.7E-08 2.3E-12 87.8 5.0 116 455-570 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 8E-08 2.7E-12 87.3 4.1 112 435-546 35-164 (185)
157 3rw6_A Nuclear RNA export fact 98.3 1.1E-07 3.9E-12 90.6 2.1 82 481-563 167-257 (267)
158 3e4g_A ATP synthase subunit S, 98.2 8E-07 2.7E-11 78.3 3.5 94 21-118 51-149 (176)
159 3rw6_A Nuclear RNA export fact 98.2 5.5E-07 1.9E-11 85.9 2.3 97 489-587 148-257 (267)
160 3e4g_A ATP synthase subunit S, 98.0 3.2E-06 1.1E-10 74.5 3.7 34 437-470 62-95 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 5.6E-05 1.9E-09 67.9 5.8 50 25-74 35-86 (197)
162 3rfe_A Platelet glycoprotein I 97.6 4.9E-05 1.7E-09 63.9 5.1 62 511-574 11-72 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00019 6.5E-09 64.4 5.5 113 457-569 38-169 (197)
164 3rfe_A Platelet glycoprotein I 97.3 0.00038 1.3E-08 58.4 6.3 56 488-546 12-68 (130)
165 2lz0_A Uncharacterized protein 62.9 11 0.00037 29.1 4.9 43 426-469 10-52 (100)
166 2lz0_A Uncharacterized protein 60.5 13 0.00044 28.7 4.9 48 494-543 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-65 Score=580.69 Aligned_cols=573 Identities=30% Similarity=0.396 Sum_probs=470.4
Q ss_pred CCCCCCCcEEeCCCCCcCCCCcccc--ccCCCCCCCEEecCCCCCCCccccCcccc-CCCCCCCEEeCCCCCCCcchhHH
Q 045291 1 YGGLRKLKSFGLSGVGIRDGSKLLQ--SMGSFPSLNTLDLSYNNFTDIAITTTQEL-HNFTNLEYLTLDESSLHISLLQS 77 (682)
Q Consensus 1 ~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~ 77 (682)
|+++++|++|+|++|.+ .+.+|. .++++++|++|||++|.+.+.. +..+ .++++|++|++++|.+++..+..
T Consensus 96 ~~~l~~L~~L~Ls~n~l--~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSL--SGPVTTLTSLGSCSGLKFLNVSSNTLDFPG---KVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCTTCCEEECCSSEE--EEEGGGGGGGGGCTTCCEEECCSSEEECCS---SCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred hccCCCCCEEECCCCcC--CCcCCChHHHhCCCCCCEEECcCCccCCcC---CHHHhccCCCCCEEECCCCccCCcCChh
Confidence 46789999999999998 677777 8999999999999999887653 3343 78999999999999998877776
Q ss_pred ---HhhccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCc
Q 045291 78 ---IASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRI 154 (682)
Q Consensus 78 ---~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i 154 (682)
+.++..|+++++.+|...+..+ +..+++|++|++++ +.+.+..|. +.. +++|++|++++|.+.. .+
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~--n~l~~~~~~-l~~-l~~L~~L~Ls~n~l~~---~~ 239 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSS--NNFSTGIPF-LGD-CSALQHLDISGNKLSG---DF 239 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCS--SCCCSCCCB-CTT-CCSCCEEECCSSCCCS---CH
T ss_pred hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcC--CcCCCCCcc-ccc-CCCCCEEECcCCcCCC---cc
Confidence 6788889999888888765444 46788888888888 445555555 555 8888888888888843 04
Q ss_pred ccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcc-cCCCcEEecCCCcCccccCcccc
Q 045291 155 LDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVH-LTSIEMLILSDNHFQIPISLEPL 233 (682)
Q Consensus 155 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~ 233 (682)
+ ..++++++|++|++++|.+.+..|.. .+++|++|++++|.+++.+ |..+.. +++|++|++++|.+++..+. .+
T Consensus 240 ~-~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~i-p~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~ 314 (768)
T 3rgz_A 240 S-RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPP-FF 314 (768)
T ss_dssp H-HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESC-CCCSCTTCTTCSEEECCSSEEEECCCG-GG
T ss_pred c-HHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCcc-CHHHHhhcCcCCEEECcCCcCCCccch-HH
Confidence 4 37888888888888888888766654 7788888888888888777 444444 58888888888888765553 47
Q ss_pred ccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCC-CCCEEEcCCCCCcCcCchHHHhc
Q 045291 234 FNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQH-DLEFVDLSHIKMNGEFPTWLLEN 312 (682)
Q Consensus 234 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~-~L~~L~ls~~~~~~~~~~~~~~~ 312 (682)
..+++|+.|++++|.+.+...... ......++.+.+ ..+...+.+|..+..++ +|+.|++++|.+.+.+|..+ ..
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~--l~~l~~L~~L~L-s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~-~~ 390 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDL-SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL-CQ 390 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHH--HTTCTTCCEEEC-CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTT-TC
T ss_pred hcCCCccEEECCCCcccCcCCHHH--HhcCCCCCEEeC-cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhh-hh
Confidence 788888888888888764432110 122345777777 55556667787787776 88888888888887777663 33
Q ss_pred --CCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCC
Q 045291 313 --NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ 390 (682)
Q Consensus 313 --~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 390 (682)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++.+|..+.. +++|+.|++++|.+.+..|..+..+++|+
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 678899999998888877778888889999999999888788877765 88899999999998888888888889999
Q ss_pred EEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN 470 (682)
Q Consensus 391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 470 (682)
+|++++|++.+.+|..+. .+++|++|++++|++++..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 470 ~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp EEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred EEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 999999988877776654 7889999999999998888888888899999999999988888888888999999999998
Q ss_pred cCCCCchhhh----------------------------------------------------------------------
Q 045291 471 SLSGKIPRWL---------------------------------------------------------------------- 480 (682)
Q Consensus 471 ~~~~~~~~~~---------------------------------------------------------------------- 480 (682)
++.+.+|..+
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 8876666543
Q ss_pred cCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCC
Q 045291 481 GNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLE 560 (682)
Q Consensus 481 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 560 (682)
..+++|++|+|++|++++.+|..+..+++|+.|+|++|++++ .+|..++.+++|+.|||++|++++.+|..+..+++|+
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG-SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC-CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 335779999999999999999999999999999999999998 7899999999999999999999999999999999999
Q ss_pred EEEccCccCcccCCcccccccccCcccccCCCCCCCCCCCCC
Q 045291 561 VFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLPIC 602 (682)
Q Consensus 561 ~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~~~ 602 (682)
+|++++|+++|.+|+ ..++.++....+.|||.+|+.|+..|
T Consensus 708 ~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~~C 748 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPRC 748 (768)
T ss_dssp EEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSCCC
T ss_pred EEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCcCC
Confidence 999999999999998 67889999999999999999988744
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.9e-61 Score=546.10 Aligned_cols=565 Identities=28% Similarity=0.364 Sum_probs=407.2
Q ss_pred CCCcEEeCCCCCcCCCCc---cccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhH--HHh
Q 045291 5 RKLKSFGLSGVGIRDGSK---LLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQ--SIA 79 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~---~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~--~~~ 79 (682)
.++++|+|+++++ .+. +|..+.++++|+.++++.+.+... +..++++++|++|+|++|.+++.+|. .+.
T Consensus 50 ~~v~~L~L~~~~l--~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~ 123 (768)
T 3rgz_A 50 DKVTSIDLSSKPL--NVGFSAVSSSLLSLTGLESLFLSNSHINGS----VSGFKCSASLTSLDLSRNSLSGPVTTLTSLG 123 (768)
T ss_dssp TEEEEEECTTSCC--CEEHHHHHHHTTTCTTCCEEECTTSCEEEC----CCCCCCCTTCCEEECCSSEEEEEGGGGGGGG
T ss_pred CcEEEEECCCCCc--CCccCccChhHhccCcccccCCcCCCcCCC----chhhccCCCCCEEECCCCcCCCcCCChHHHh
Confidence 3577888888877 565 777788888888888887766543 45777888888888888888777776 777
Q ss_pred hccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHH--hhcCCCCcEEEccCCCCCCCCCCcccc
Q 045291 80 SLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQII--GESMPSLKYLSLSGSILGTNSSRILDQ 157 (682)
Q Consensus 80 ~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l--~~~l~~L~~L~L~~~~l~~~~~~i~~~ 157 (682)
++..|+++++.+|...+.++.. .+.++++|++|++++ +.+.+..+... ...+++|++|++++|.+.. ..
T Consensus 124 ~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~-- 194 (768)
T 3rgz_A 124 SCSGLKFLNVSSNTLDFPGKVS-GGLKLNSLEVLDLSA--NSISGANVVGWVLSDGCGELKHLAISGNKISG----DV-- 194 (768)
T ss_dssp GCTTCCEEECCSSEEECCSSCC-SCCCCTTCSEEECCS--SCCEEETHHHHHHTTCCTTCCEEECCSSEEES----CC--
T ss_pred CCCCCCEEECcCCccCCcCCHH-HhccCCCCCEEECCC--CccCCcCChhhhhhccCCCCCEEECCCCcccc----cC--
Confidence 8888888888887776655543 236777888888877 44445444441 2236667777776666622 11
Q ss_pred cccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCC
Q 045291 158 GLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHS 237 (682)
Q Consensus 158 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 237 (682)
.+..+++|++|++++|.+.+..|. ++.+++|++|++++|.+++.+ +..+..+++|++|++++|.+++.++.. .++
T Consensus 195 ~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~ 269 (768)
T 3rgz_A 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPPL---PLK 269 (768)
T ss_dssp BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCCC---CCT
T ss_pred CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCcc---ccC
Confidence 125566666666666666655554 666666666666666665444 455566666666666666665444321 455
Q ss_pred CCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCC---
Q 045291 238 RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA--- 314 (682)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~--- 314 (682)
+|++|++++|.+.+...... ......++.+.+ ..+.+.+..|..+..+++|+.|++++|.+.+.+|...+..++
T Consensus 270 ~L~~L~L~~n~l~~~ip~~~--~~~~~~L~~L~L-s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 270 SLQYLSLAENKFTGEIPDFL--SGACDTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp TCCEEECCSSEEEESCCCCS--CTTCTTCSEEEC-CSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred CCCEEECcCCccCCccCHHH--HhhcCcCCEEEC-cCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 55555555555543322111 011134444544 333333344445555555555555555544444444344444
Q ss_pred ----------------------CCcEEEcCCCCCcccCCCCCCC--CCCccEEEccCCcCCCCCChhhhhcCCCceEEEe
Q 045291 315 ----------------------KLETLFLINDSIGGPFRLPIHP--HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI 370 (682)
Q Consensus 315 ----------------------~L~~L~l~~~~l~~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 370 (682)
+|++|++++|.+.+..+..+.. +++|++|++++|.+++.+|..+.. +++|++|++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L 425 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHL 425 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEEC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEEC
Confidence 4555555555544433434333 667888888888887777777765 889999999
Q ss_pred cCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcc
Q 045291 371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG 450 (682)
Q Consensus 371 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 450 (682)
++|.+++..|..|..+++|++|++++|.+.+.+|..+. .+++|++|++++|++++..|..+..+++|++|++++|.+.+
T Consensus 426 s~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 504 (768)
T 3rgz_A 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504 (768)
T ss_dssp CSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred cCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC
Confidence 99999888888899999999999999999877777665 78999999999999998888888899999999999999998
Q ss_pred cCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchh---------------------------
Q 045291 451 EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE--------------------------- 503 (682)
Q Consensus 451 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------------- 503 (682)
..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..
T Consensus 505 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (768)
T 3rgz_A 505 EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCC
T ss_pred cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccc
Confidence 89999999999999999999999889999999999999999999888665543
Q ss_pred -------------------------------------------ccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEEC
Q 045291 504 -------------------------------------------FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL 540 (682)
Q Consensus 504 -------------------------------------------~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l 540 (682)
+..+++|+.|+|++|++++ .+|..++.+++|+.|+|
T Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g-~ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG-YIPKEIGSMPYLFILNL 663 (768)
T ss_dssp TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS-CCCGGGGGCTTCCEEEC
T ss_pred ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc-cCCHHHhccccCCEEeC
Confidence 3335778999999999998 78899999999999999
Q ss_pred CCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCC
Q 045291 541 SYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLC 595 (682)
Q Consensus 541 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c 595 (682)
++|++++.+|..++.+++|+.||+++|++++.+|..+..+..++.+++++|+...
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence 9999999999999999999999999999999999989999999999999997553
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-57 Score=511.05 Aligned_cols=568 Identities=19% Similarity=0.178 Sum_probs=410.0
Q ss_pred cEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCccee
Q 045291 8 KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87 (682)
Q Consensus 8 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l 87 (682)
+.++.+++++ ..+|..+. +++++|+|++|.+.++. +..+.++++|++|++++|.+++..+..+.++..|+++
T Consensus 7 ~~~~cs~~~L---~~ip~~~~--~~l~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 78 (680)
T 1ziw_A 7 EVADCSHLKL---TQVPDDLP--TNITVLNLTHNQLRRLP---AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78 (680)
T ss_dssp SEEECCSSCC---SSCCSCSC--TTCSEEECCSSCCCCCC---GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEE
T ss_pred CeeECCCCCc---cccccccC--CCCcEEECCCCCCCCcC---HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEE
Confidence 4455555554 33444432 55666666666665552 2345566666666666666655555556666666666
Q ss_pred eccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCE
Q 045291 88 LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQE 167 (682)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~ 167 (682)
++.+|... .++.. +|+++++|++|++++| .+.+..+..+.. +++|++|++++|.+.. +++..++++++|++
T Consensus 79 ~L~~n~l~-~l~~~-~~~~l~~L~~L~L~~n--~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 79 NLQHNELS-QLSDK-TFAFCTNLTELHLMSN--SIQKIKNNPFVK-QKNLITLDLSHNGLSS----TKLGTQVQLENLQE 149 (680)
T ss_dssp ECCSSCCC-CCCTT-TTTTCTTCSEEECCSS--CCCCCCSCTTTT-CTTCCEEECCSSCCSC----CCCCSSSCCTTCCE
T ss_pred ECCCCccC-ccChh-hhccCCCCCEEECCCC--ccCccChhHccc-cCCCCEEECCCCcccc----cCchhhcccccCCE
Confidence 66555443 23322 3556666666666653 222222233333 6666666666665533 33335555666666
Q ss_pred EEccCCCCcccCchhhc--CCCCCCEEeccCCccccccCCchhccc---------------------------CCCcEEe
Q 045291 168 LRMADNDLRGSLPWCLA--NMTSLRILDVSFNQLTGSISSSPLVHL---------------------------TSIEMLI 218 (682)
Q Consensus 168 L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~i~~~~~~~l---------------------------~~L~~L~ 218 (682)
|++++|.+++..+..+. .+++|++|++++|.+++ +.+..+..+ ++|+.|+
T Consensus 150 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~ 228 (680)
T 1ziw_A 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228 (680)
T ss_dssp EECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEE
T ss_pred EEccCCcccccCHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEE
Confidence 66666666554444433 34566666666665552 223333322 5677777
Q ss_pred cCCCcCccccCccccccCC--CCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEc
Q 045291 219 LSDNHFQIPISLEPLFNHS--RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL 296 (682)
Q Consensus 219 L~~n~l~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l 296 (682)
+++|.+++..+ ..+..++ +|+.|++++|.+.+..... .....+++.+.+ ..+......|..+..+++|+.+++
T Consensus 229 L~~n~l~~~~~-~~~~~l~~~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~L-~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 229 LSNSQLSTTSN-TTFLGLKWTNLTMLDLSYNNLNVVGNDS---FAWLPQLEYFFL-EYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp CTTSCCCEECT-TTTGGGGGSCCCEEECTTSCCCEECTTT---TTTCTTCCEEEC-CSCCBSEECTTTTTTCTTCCEEEC
T ss_pred ccCCcccccCh-hHhhccCcCCCCEEECCCCCcCccCccc---ccCcccccEeeC-CCCccCccChhhhcCCCCccEEec
Confidence 77777765433 2344444 4888888888876543221 223346777777 555666677888899999999999
Q ss_pred CCCCCcC-----cCc---hHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCC-CCChhhhhc--CCCc
Q 045291 297 SHIKMNG-----EFP---TWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQG-HMPVEIGDI--LPSL 365 (682)
Q Consensus 297 s~~~~~~-----~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~--l~~L 365 (682)
+++...+ .+| +..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.. .++...+.. .++|
T Consensus 304 ~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L 383 (680)
T 1ziw_A 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383 (680)
T ss_dssp TTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCC
T ss_pred cchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcC
Confidence 9875443 122 2236788999999999999999888889999999999999997542 233222221 3689
Q ss_pred eEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCC
Q 045291 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG 445 (682)
Q Consensus 366 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 445 (682)
+.|++++|.+.+..+..|..+++|++|++++|.+.+.++...+.++++|++|++++|++.+..+..+..+++|+.|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 99999999999888999999999999999999998778877777899999999999999988888899999999999999
Q ss_pred CcCc--ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcc--------hhccCCCCCCEEEc
Q 045291 446 NRFV--GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIP--------VEFCQLDLLQILDI 515 (682)
Q Consensus 446 n~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L 515 (682)
|.+. +..|..+..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+ ..|.++++|+.|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 9886 4578889999999999999999998888889999999999999999986532 23788999999999
Q ss_pred cCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccc-cccccCcccccCCCCC
Q 045291 516 SDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA-QFATFNESSYEGNIFL 594 (682)
Q Consensus 516 s~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~l~~~~~~~n~~~ 594 (682)
++|+++. ..+..|.++++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+. .+++++.+++.+|||.
T Consensus 544 ~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 544 ESNGFDE-IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred CCCCCCC-CCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 9999985 5667899999999999999999988888888999999999999999987776565 6889999999999999
Q ss_pred CCCCC
Q 045291 595 CGLPL 599 (682)
Q Consensus 595 c~~~~ 599 (682)
|+|+.
T Consensus 623 c~c~~ 627 (680)
T 1ziw_A 623 CTCES 627 (680)
T ss_dssp BCCCC
T ss_pred cCCcc
Confidence 99974
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-54 Score=487.14 Aligned_cols=588 Identities=19% Similarity=0.206 Sum_probs=425.4
Q ss_pred CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCc
Q 045291 5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS 84 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 84 (682)
+++++|+|++|++ ....+..|.++++|++|+|++|.+.++. +..+.++++|++|++++|.++...+..+.++..|
T Consensus 25 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCCCCC---TTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccCccC---HHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 4678888888877 4555566777888888888888777763 4467777888888888887775555567777788
Q ss_pred ceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCccccccc--CC
Q 045291 85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLC--SL 162 (682)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~--~l 162 (682)
+++++.+|...+ ++.. +|+++++|++|++++ +.+.+..+..+.. +++|++|++++|.+.. +++..+. .+
T Consensus 100 ~~L~L~~n~l~~-~~~~-~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~~~~ 170 (680)
T 1ziw_A 100 TELHLMSNSIQK-IKNN-PFVKQKNLITLDLSH--NGLSSTKLGTQVQ-LENLQELLLSNNKIQA----LKSEELDIFAN 170 (680)
T ss_dssp SEEECCSSCCCC-CCSC-TTTTCTTCCEEECCS--SCCSCCCCCSSSC-CTTCCEEECCSSCCCC----BCHHHHGGGTT
T ss_pred CEEECCCCccCc-cChh-HccccCCCCEEECCC--CcccccCchhhcc-cccCCEEEccCCcccc----cCHHHhhcccc
Confidence 888877776643 3322 377788888888887 3444444444444 7788888888777744 4443332 45
Q ss_pred CCCCEEEccCCCCcccCchhhcCC---------------------------CCCCEEeccCCccccccCCchhcccCC--
Q 045291 163 VHLQELRMADNDLRGSLPWCLANM---------------------------TSLRILDVSFNQLTGSISSSPLVHLTS-- 213 (682)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~~~~l---------------------------~~L~~L~L~~n~l~~~i~~~~~~~l~~-- 213 (682)
++|++|++++|.+++..|..+..+ ++|++|++++|.+++.. +..+..++.
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~-~~~~~~l~~~~ 249 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS-NTTFLGLKWTN 249 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC-TTTTGGGGGSC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccC-hhHhhccCcCC
Confidence 777888888777776666655543 56778888888887444 667777654
Q ss_pred CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCC-----CCCc----c
Q 045291 214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGF-----IFPK----F 284 (682)
Q Consensus 214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~----~ 284 (682)
|++|++++|.+++.. ...+..+++|+.+++++|.+.+..... .....+++.+.+.. +.... .+|. .
T Consensus 250 L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~-~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVG-NDSFAWLPQLEYFFLEYNNIQHLFSHS---LHGLFNVRYLNLKR-SFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp CCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSCCBSEECTTT---TTTCTTCCEEECTT-CBCCC------CCEECTTT
T ss_pred CCEEECCCCCcCccC-cccccCcccccEeeCCCCccCccChhh---hcCCCCccEEeccc-hhhhcccccccccccChhh
Confidence 999999999887443 345778889999999998887543221 23334677777732 21111 2333 6
Q ss_pred cccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCc--ccCCCCCCC--CCCccEEEccCCcCCCCCChhhhh
Q 045291 285 LYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG--GPFRLPIHP--HRRLRFLDVSNNNFQGHMPVEIGD 360 (682)
Q Consensus 285 l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~ 360 (682)
+..+++|+.|++++|.+.+..+.. +..+++|++|++++|.+. ......|.. .++|+.|++++|.+.+..|..+..
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTT-TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred cccCCCCCEEECCCCccCCCChhH-hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 778999999999999999766655 789999999999998754 233333333 358999999999998666665544
Q ss_pred cCCCceEEEecCCcCCcCCC-cccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC--CcccccCCCCCC
Q 045291 361 ILPSLFSFNISTNALHGSIP-SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ--GHMFSRNFNLTN 437 (682)
Q Consensus 361 ~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~ 437 (682)
+++|+.|++++|.+.+..+ ..|.++++|++|++++|++. .++...+..+++|+.|++++|.+. +..+..+..+++
T Consensus 404 -l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~ 481 (680)
T 1ziw_A 404 -LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481 (680)
T ss_dssp -CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTT
T ss_pred -CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-eeChhhhhcCcccccchhccccccccccCCcccccCCC
Confidence 8999999999999986554 68999999999999999997 566666668999999999999886 567788999999
Q ss_pred ccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCch--------hhhcCCCCCCeecCCCCcCcCCcchhccCCCC
Q 045291 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP--------RWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL 509 (682)
Q Consensus 438 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 509 (682)
|+.|++++|.+.+..+..|.++++|++|++++|.+.+..+ ..+.++++|++|+|++|+++.+.+..|.++++
T Consensus 482 L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccC
Confidence 9999999999998888889999999999999999975422 23788999999999999999777778999999
Q ss_pred CCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhh-cCCCCCEEEccCccCcccCC--cccccccccCcc
Q 045291 510 LQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLV-ELKTLEVFSVAYNNLSGEIP--EWTAQFATFNES 586 (682)
Q Consensus 510 L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~--~~~~~~~~l~~~ 586 (682)
|+.|++++|++++ ..+..|.++++|+.|++++|++++..+..+. .+++|+.+++++|++.|.|+ .|+..|..-...
T Consensus 562 L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~ 640 (680)
T 1ziw_A 562 LKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640 (680)
T ss_dssp CCEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC--
T ss_pred cceeECCCCCCCc-CCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCc
Confidence 9999999999996 6778899999999999999999998888887 78999999999999999987 444443222211
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 045291 587 SYEGNIFLCGLPLPICISPATMPEASIGNEQDDNL 621 (682)
Q Consensus 587 ~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (682)
.+.+. .....|.+|...++......+...+
T Consensus 641 ~~~~~-----~~~~~C~~p~~~~g~~l~~~~~~~~ 670 (680)
T 1ziw_A 641 NIPEL-----SSHYLCNTPPHYHGFPVRLFDTSSC 670 (680)
T ss_dssp -----------------------------------
T ss_pred ccccc-----cCCcEECCchHHCCCcccccChhhc
Confidence 11111 0122566677666765555554443
No 5
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=7.5e-55 Score=498.67 Aligned_cols=559 Identities=19% Similarity=0.180 Sum_probs=384.8
Q ss_pred cEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcch-hHHHhhccCcce
Q 045291 8 KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISL-LQSIASLFPSLK 86 (682)
Q Consensus 8 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~ 86 (682)
+..+.+++++ ..+|. -.++|++|||++|.|+.+. +.++.++++|++|++++|...+.+ +..+.++..|++
T Consensus 7 ~~~dcs~~~L---~~vP~---lp~~l~~LdLs~N~i~~i~---~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 7 RIAFYRFCNL---TQVPQ---VLNTTERLLLSFNYIRTVT---ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp EEEEESCCCS---SCCCS---SCTTCCEEEEESCCCCEEC---SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred eEEEccCCCC---CCCCC---CCCCcCEEECCCCcCCccC---hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 4567777776 55665 4578899999999888774 568888999999999888655444 667778888888
Q ss_pred eeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHH--HhhcCCCCcEEEccCCCCCCCCCCcccccccCCCC
Q 045291 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQI--IGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH 164 (682)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~ 164 (682)
+++.+|...+..|.. |.++++|++|++++ +.+.+..+.. +.. +++|++|++++|.+... .+...++++++
T Consensus 78 L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~~-L~~L~~L~Ls~N~l~~~---~~~~~~~~L~~ 149 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDA--FQGLFHLFELRLYF--CGLSDAVLKDGYFRN-LKALTRLDLSKNQIRSL---YLHPSFGKLNS 149 (844)
T ss_dssp EECTTCCCCEECTTS--SCSCSSCCCEECTT--CCCSSCCSTTCCCSS-CSSCCEEEEESCCCCCC---CCCGGGGTCSS
T ss_pred EECCCCcCcccCHhH--ccCCcccCEeeCcC--CCCCcccccCccccc-cCCCCEEECCCCccccc---ccchhHhhCCC
Confidence 888877766544553 78888888888888 4444434433 344 88888888888887430 22236788888
Q ss_pred CCEEEccCCCCcccCchhhcCC--CCCCEEeccCCccccccCCchhcccCC------CcEEecCCCcCccccCcccc--c
Q 045291 165 LQELRMADNDLRGSLPWCLANM--TSLRILDVSFNQLTGSISSSPLVHLTS------IEMLILSDNHFQIPISLEPL--F 234 (682)
Q Consensus 165 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~i~~~~~~~l~~------L~~L~L~~n~l~~~~~~~~~--~ 234 (682)
|++|++++|.+++..+..+..+ ++|+.|++++|.+.+.. +..+..+++ |+.|++++|.+++..+.... .
T Consensus 150 L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l 228 (844)
T 3j0a_A 150 LKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228 (844)
T ss_dssp CCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred CCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc-ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence 8888888888887777777766 78888888888887555 444444444 88888888877654443221 1
Q ss_pred cCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCccccc--CCCCCEEEcCCCCCcCcCchHHHhc
Q 045291 235 NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYH--QHDLEFVDLSHIKMNGEFPTWLLEN 312 (682)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~--~~~L~~L~ls~~~~~~~~~~~~~~~ 312 (682)
....++.+.+..+....... .+......+..+.. .++|+.|++++|.+.+..+.. +..
T Consensus 229 ~~~~l~~L~l~~~~~~~~~~-------------------~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~ 288 (844)
T 3j0a_A 229 SKSQAFSLILAHHIMGAGFG-------------------FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV-FET 288 (844)
T ss_dssp CSCCBSEEECCSSCCBCSSS-------------------CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC-SSS
T ss_pred Ccccccceeccccccccccc-------------------ccccCCCChhhhhccccCCccEEECCCCcccccChhh-hhc
Confidence 22456666665433221100 00011111122222 357888888888877555554 677
Q ss_pred CCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEE
Q 045291 313 NAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQIL 392 (682)
Q Consensus 313 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 392 (682)
+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.. +++|+.|++++|.+....+..|..+++|++|
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYG-LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSS-CTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcC-CCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence 888888888888888877777888888888888888887554554444 7888888888888877777778888888888
Q ss_pred EccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccC-CccccCCCCCCEEeccCCc
Q 045291 393 DLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEI-PQSLSKCSSLEGLYLNNNS 471 (682)
Q Consensus 393 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~ 471 (682)
++++|.+. .++ .+++|+.|++++|+++... . ...+++.|++++|.+.+.. +..+.++++|++|++++|+
T Consensus 368 ~Ls~N~l~-~i~-----~~~~L~~L~l~~N~l~~l~-~---~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 368 DLRDNALT-TIH-----FIPSIPDIFLSGNKLVTLP-K---INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp EEETCCSC-CCS-----SCCSCSEEEEESCCCCCCC-C---CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred ECCCCCCC-ccc-----CCCCcchhccCCCCccccc-c---cccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 88888876 443 2677888888888877432 2 2456788888888877542 2234577888888888888
Q ss_pred CCCCchh-hhcCCCCCCeecCCCCcCc-----CCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcC
Q 045291 472 LSGKIPR-WLGNLTRLQYIIMPNNHLE-----GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545 (682)
Q Consensus 472 ~~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 545 (682)
+.+..+. .+..+++|++|++++|.++ +..+..|.++++|+.|+|++|++++ ..+..|.++++|+.|+|++|++
T Consensus 438 l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l 516 (844)
T 3j0a_A 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-LPPGVFSHLTALRGLSLNSNRL 516 (844)
T ss_dssp CCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT-CCTTSSSSCCSCSEEEEESCCC
T ss_pred ccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc-cChhHccchhhhheeECCCCCC
Confidence 7754332 3455778888888888876 3334567777888888888888876 6677778888888888888888
Q ss_pred CCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCCC--------------------CCCCC
Q 045291 546 NGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPLP--------------------ICISP 605 (682)
Q Consensus 546 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~~--------------------~~~~~ 605 (682)
++..+..+. ++|+.|++++|++++..|.. +..++.+++.+|||.|+|+.. .|.+|
T Consensus 517 ~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~---~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p 591 (844)
T 3j0a_A 517 TVLSHNDLP--ANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYP 591 (844)
T ss_dssp SSCCCCCCC--SCCCEEEEEEECCCCCCSCC---CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSC
T ss_pred CccChhhhh--ccccEEECCCCcCCCCChhH---hCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCc
Confidence 866665554 77888888888888777763 446777788888888877642 46667
Q ss_pred CCCCCCCCCCCCCCCc
Q 045291 606 ATMPEASIGNEQDDNL 621 (682)
Q Consensus 606 ~~~~~~~~~~~~~~~~ 621 (682)
....+.+....+...|
T Consensus 592 ~~~~g~~l~~~~~~~C 607 (844)
T 3j0a_A 592 DSFSGVSLFSLSTEGC 607 (844)
T ss_dssp SSSCSCCTTTCCCCCC
T ss_pred hhhCCCccccCccccC
Confidence 7666655444333333
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.9e-54 Score=476.08 Aligned_cols=539 Identities=18% Similarity=0.164 Sum_probs=339.5
Q ss_pred cEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCccee
Q 045291 8 KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87 (682)
Q Consensus 8 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l 87 (682)
+.++.++.++ ..+|..+. +++++|||++|.|+++. +.++.++++|++|++++|.+++..|..+.++..|+++
T Consensus 15 ~~~~c~~~~l---~~iP~~l~--~~l~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 86 (606)
T 3t6q_A 15 KTYNCENLGL---NEIPGTLP--NSTECLEFSFNVLPTIQ---NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL 86 (606)
T ss_dssp TEEECTTSCC---SSCCTTSC--TTCCEEECTTCCCSEEC---TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ceEECCCCCc---ccCcCCCC--CcCcEEEccCCccCcCC---hhHhccCccceEEECCCCccceeChhhccCccccCee
Confidence 5678888776 56777664 47999999999999874 5589999999999999999988888888888888888
Q ss_pred eccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCE
Q 045291 88 LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQE 167 (682)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~ 167 (682)
++.+|...+..|.. |+++++|++|++++|. +.+..+..+.. +++|++|++++|.+.. ++...+..+++|++
T Consensus 87 ~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~--i~~l~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 87 VLTANPLIFMAETA--LSGPKALKHLFFIQTG--ISSIDFIPLHN-QKTLESLYLGSNHISS----IKLPKGFPTEKLKV 157 (606)
T ss_dssp ECTTCCCSEECTTT--TSSCTTCCEEECTTSC--CSCGGGSCCTT-CTTCCEEECCSSCCCC----CCCCTTCCCTTCCE
T ss_pred eCCCCcccccChhh--hcccccccEeeccccC--cccCCcchhcc-CCcccEEECCCCcccc----cCcccccCCcccCE
Confidence 88888776544543 8888888888888843 33332333444 8888888888888854 43234556888888
Q ss_pred EEccCCCCcccCchhhcCCCCCC--EEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEcc
Q 045291 168 LRMADNDLRGSLPWCLANMTSLR--ILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYAD 245 (682)
Q Consensus 168 L~L~~n~l~~~~~~~~~~l~~L~--~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 245 (682)
|++++|.+++..+..|..+++|+ +|++++|.+++ +++..+. ..+|+.|++++|.... ..+..+.++....+.
T Consensus 158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~-~~~L~~L~l~~~~~~~----~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFD-SAVFQSLNFGGTQNLL----VIFKGLKNSTIQSLW 231 (606)
T ss_dssp EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTT-TCEEEEEECTTCSCHH----HHHHHTTTCEEEEEE
T ss_pred EEcccCcccccChhhhhhhcccceeEEecCCCccCc-cChhHhh-hccccccccCCchhHH----HHhhhccccchhhee
Confidence 88888888877778888888888 78888888874 4244443 4678888888875221 112333333332222
Q ss_pred CCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCC--CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCC
Q 045291 246 NNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQH--DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN 323 (682)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~--~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~ 323 (682)
...+.... .....+..+..+. +++.+++++|.+.+..+.. +..+++|++|++++
T Consensus 232 ~~~~~~~~-----------------------~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 287 (606)
T 3t6q_A 232 LGTFEDMD-----------------------DEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-FHCFSGLQELDLTA 287 (606)
T ss_dssp CCCCTTSC-----------------------CCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT-TTTCTTCSEEECTT
T ss_pred chhhcccc-----------------------ccccChhHhchhhcCceeEEEeecCccCccCHHH-hccccCCCEEeccC
Confidence 22111100 0001111122221 4566666666665433332 55666666666666
Q ss_pred CCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCC-cccCCCCCCCEEEccCCcCCCc
Q 045291 324 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIP-SSFGNMKFLQILDLSNNHLTGE 402 (682)
Q Consensus 324 ~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~ 402 (682)
|.+... +..+..+++|++|++++|.+.+..|..+.. +++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .
T Consensus 288 n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 364 (606)
T 3t6q_A 288 THLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-T 364 (606)
T ss_dssp SCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC-E
T ss_pred CccCCC-ChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc-c
Confidence 666543 334555666666666666665433333333 6666666666666654333 34666666666666666665 2
Q ss_pred Cc--hhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCchhh
Q 045291 403 IP--EYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRW 479 (682)
Q Consensus 403 ~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~ 479 (682)
+. ...+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence 22 2223356666666666666666656666666666666666666654433 23566666666666666666556666
Q ss_pred hcCCCCCCeecCCCCcCcCC---cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcC
Q 045291 480 LGNLTRLQYIIMPNNHLEGP---IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVEL 556 (682)
Q Consensus 480 ~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 556 (682)
+..+++|++|++++|.+++. .+..+..+++|+.|++++|++++ ..|..|..+++|++|++++|++++..|+.+..+
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 523 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTC
T ss_pred HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cChhhhccccCCCEEECCCCccCcCChhHhCcc
Confidence 66666666666666666542 22445666666666666666664 445666666666666666666666666666666
Q ss_pred CCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 557 KTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 557 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
++| .|++++|++++..|..+..+++++.+++.+||+.|+|+
T Consensus 524 ~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 524 KGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 666 66666666665555555556666666666666666664
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-53 Score=471.85 Aligned_cols=541 Identities=18% Similarity=0.158 Sum_probs=361.3
Q ss_pred CcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcce
Q 045291 7 LKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86 (682)
Q Consensus 7 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 86 (682)
-++++.+++++ ..+|..+. +++++|+|++|.++++. +..+.++++|++|++++|.+++..+..+.++..|++
T Consensus 13 ~~~~~c~~~~l---~~ip~~~~--~~l~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 13 NITYQCMDQKL---SKVPDDIP--SSTKNIDLSFNPLKILK---SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp TTEEECTTSCC---SSCCTTSC--TTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCceEccCCCc---ccCCCCCC--CCcCEEECCCCCcCEeC---hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 46788888887 56777654 89999999999998884 448999999999999999998877888888888999
Q ss_pred eeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCC
Q 045291 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ 166 (682)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~ 166 (682)
+++.+|...+..|.. |+++++|++|++++| .+.+..+..+.. +++|++|++++|.+.. .++|. .++++++|+
T Consensus 85 L~Ls~n~l~~~~p~~--~~~l~~L~~L~L~~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~ 156 (606)
T 3vq2_A 85 LILTGNPIQSFSPGS--FSGLTSLENLVAVET--KLASLESFPIGQ-LITLKKLNVAHNFIHS--CKLPA-YFSNLTNLV 156 (606)
T ss_dssp EECTTCCCCCCCTTS--STTCTTCCEEECTTS--CCCCSSSSCCTT-CTTCCEEECCSSCCCC--CCCCG-GGGTCTTCC
T ss_pred eECCCCcccccChhh--cCCcccCCEEEccCC--ccccccccccCC-CCCCCEEeCCCCcccc--eechH-hHhhcCCCC
Confidence 998888776544554 888999999999884 333333334455 8889999999888832 01554 788889999
Q ss_pred EEEccCCCCcccCchhhcCCCCCC----EEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291 167 ELRMADNDLRGSLPWCLANMTSLR----ILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242 (682)
Q Consensus 167 ~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 242 (682)
+|++++|.+++..+..++.+++|+ +|++++|.++ .+++..+... +|++|++++|.+++......+..++.++.+
T Consensus 157 ~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l 234 (606)
T 3vq2_A 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234 (606)
T ss_dssp EEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEE
T ss_pred EEEccCCcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccc
Confidence 999999988877777777666554 7899999887 5545544444 888999998888654444557778888887
Q ss_pred EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEc-CCCCCcCcCchHHHhcCCCCcEEEc
Q 045291 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL-SHIKMNGEFPTWLLENNAKLETLFL 321 (682)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l-s~~~~~~~~~~~~~~~~~~L~~L~l 321 (682)
.+..+.+........ .....+..+..+ .++.+++ ..+.+.+.+|. +..+++|+.+++
T Consensus 235 ~l~~~~~~~~~~l~~-------------------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l 292 (606)
T 3vq2_A 235 RLILGEFKDERNLEI-------------------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSL 292 (606)
T ss_dssp EEEEECCTTSCCCSC-------------------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEE
T ss_pred cccccccccCCcccc-------------------cChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEe
Confidence 775544332110000 000001111111 3444555 44555555554 556666777777
Q ss_pred CCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCC
Q 045291 322 INDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG 401 (682)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 401 (682)
+++.+.... .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|++|++++|.+.+
T Consensus 293 ~~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 293 AGVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp ESCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEE
T ss_pred cCccchhhh--hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCC
Confidence 766665543 555666777777777766 35662 2 3667777777776443322 45566777777777776652
Q ss_pred c--CchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCchh
Q 045291 402 E--IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPR 478 (682)
Q Consensus 402 ~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~ 478 (682)
. ++.. +..+++|++|++++|.+.+. +..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|.
T Consensus 365 ~~~~~~~-~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 365 SGCCSYS-DLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEECCHH-HHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred Ccchhhh-hccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 2 1333 33567777777777766543 3556666777777777777665555 5666677777777777777666666
Q ss_pred hhcCCCCCCeecCCCCcCcC-CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCC
Q 045291 479 WLGNLTRLQYIIMPNNHLEG-PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK 557 (682)
Q Consensus 479 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 557 (682)
.+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++ ..|..+..+++|++|++++|++++..|..+..++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 66677777777777777665 356666677777777777777664 5566666777777777777777766666677777
Q ss_pred CCCEEEccCccCcccCCccccccc-ccCcccccCCCCCCCCCC
Q 045291 558 TLEVFSVAYNNLSGEIPEWTAQFA-TFNESSYEGNIFLCGLPL 599 (682)
Q Consensus 558 ~L~~L~l~~n~l~~~~~~~~~~~~-~l~~~~~~~n~~~c~~~~ 599 (682)
+|+.|++++|+++ .+|..+..+. +++.+++.+||+.|+|+.
T Consensus 522 ~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 522 SLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 7777777777766 4554455554 466777777777776654
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-52 Score=464.50 Aligned_cols=519 Identities=18% Similarity=0.155 Sum_probs=433.9
Q ss_pred CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCc
Q 045291 5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS 84 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 84 (682)
+++++|+|++|.+ ....|..|+++++|++|+|++|++.++. +.+|.++++|++|++++|.+++..|..+.++..|
T Consensus 33 ~~l~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 107 (606)
T 3t6q_A 33 NSTECLEFSFNVL--PTIQNTTFSRLINLTFLDLTRCQIYWIH---EDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107 (606)
T ss_dssp TTCCEEECTTCCC--SEECTTTSTTCTTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTC
T ss_pred CcCcEEEccCCcc--CcCChhHhccCccceEEECCCCccceeC---hhhccCccccCeeeCCCCcccccChhhhcccccc
Confidence 4799999999999 6666889999999999999999999874 6689999999999999999998889999999999
Q ss_pred ceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCC
Q 045291 85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVH 164 (682)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~ 164 (682)
+++++.+|...+..+. .++++++|++|++++|. +.+.....+.. +++|++|++++|.+.. +++..++.+++
T Consensus 108 ~~L~L~~n~i~~l~~~--~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-l~~L~~L~L~~n~l~~----~~~~~~~~l~~ 178 (606)
T 3t6q_A 108 KHLFFIQTGISSIDFI--PLHNQKTLESLYLGSNH--ISSIKLPKGFP-TEKLKVLDFQNNAIHY----LSKEDMSSLQQ 178 (606)
T ss_dssp CEEECTTSCCSCGGGS--CCTTCTTCCEEECCSSC--CCCCCCCTTCC-CTTCCEEECCSSCCCE----ECHHHHHTTTT
T ss_pred cEeeccccCcccCCcc--hhccCCcccEEECCCCc--ccccCcccccC-CcccCEEEcccCcccc----cChhhhhhhcc
Confidence 9999999987653344 38999999999999954 44422233444 8999999999999966 66668999999
Q ss_pred CC--EEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCcc----ccCccccccCC-
Q 045291 165 LQ--ELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQI----PISLEPLFNHS- 237 (682)
Q Consensus 165 L~--~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~~~~- 237 (682)
|+ .|++++|.+.+..|..+.. .+|++|++++|... +..+..+.++....+....+.. .++...+..+.
T Consensus 179 L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~----~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~ 253 (606)
T 3t6q_A 179 ATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL----LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253 (606)
T ss_dssp CCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH----HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG
T ss_pred cceeEEecCCCccCccChhHhhh-ccccccccCCchhH----HHHhhhccccchhheechhhccccccccChhHhchhhc
Confidence 99 9999999999877776654 68999999999732 4455556555444433322211 11112222222
Q ss_pred -CCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCC
Q 045291 238 -RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKL 316 (682)
Q Consensus 238 -~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L 316 (682)
+++.+++++|.+.. ..+..+..+++|+.|++++|.+. .+|.. +..+++|
T Consensus 254 ~~L~~L~l~~n~l~~----------------------------~~~~~~~~l~~L~~L~l~~n~l~-~lp~~-l~~l~~L 303 (606)
T 3t6q_A 254 MSVESINLQKHYFFN----------------------------ISSNTFHCFSGLQELDLTATHLS-ELPSG-LVGLSTL 303 (606)
T ss_dssp SEEEEEECTTCCCSS----------------------------CCTTTTTTCTTCSEEECTTSCCS-CCCSS-CCSCTTC
T ss_pred CceeEEEeecCccCc----------------------------cCHHHhccccCCCEEeccCCccC-CCChh-hcccccC
Confidence 57777777776652 34556788899999999999998 67776 6788999
Q ss_pred cEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCC--CcccCCCCCCCEEEc
Q 045291 317 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSI--PSSFGNMKFLQILDL 394 (682)
Q Consensus 317 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l 394 (682)
++|++++|.+.+..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 304 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp CEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred CEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 999999999998888888899999999999999987787765566999999999999998765 778999999999999
Q ss_pred cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccc-cCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCC
Q 045291 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFS-RNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473 (682)
Q Consensus 395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 473 (682)
++|.+. .++...+..+++|++|++++|++.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|++.
T Consensus 384 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 462 (606)
T 3t6q_A 384 SYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462 (606)
T ss_dssp CSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCG
T ss_pred CCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCC
Confidence 999997 44444555899999999999999876554 4888999999999999999888999999999999999999997
Q ss_pred CC---chhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291 474 GK---IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP 550 (682)
Q Consensus 474 ~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 550 (682)
+. .+..+..+++|++|++++|.+++..|..|..+++|+.|++++|++++ ..|..+..+++| .|++++|++++..|
T Consensus 463 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp GGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCG-GGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred ccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCc-CChhHhCccccc-EEECcCCcccccCH
Confidence 62 23568899999999999999999999999999999999999999987 788999999999 99999999999999
Q ss_pred hhhhcCCCCCEEEccCccCcccCCc
Q 045291 551 HQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 551 ~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
..+..+++|+.+++++|++.|.++.
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEECSGGG
T ss_pred hhcccCCCCCEEeCCCCCccccCCc
Confidence 9999999999999999999998874
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=471.27 Aligned_cols=513 Identities=22% Similarity=0.242 Sum_probs=421.6
Q ss_pred CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCC-CccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhcc
Q 045291 4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFT-DIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLF 82 (682)
Q Consensus 4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 82 (682)
.++|++|+|++|.+ ....|..|..+++|++|||++|... .+. +.++.++++|++|+|++|.+++..|..+.++.
T Consensus 23 p~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~---~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 23 LNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTID---KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp CTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEEC---TTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccC---HHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 47899999999999 6777899999999999999999543 342 45899999999999999999988899999999
Q ss_pred CcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchh-HHHhhcCCCCcEEEccCCCCCCCCCCcccccccC
Q 045291 83 PSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFL-QIIGESMPSLKYLSLSGSILGTNSSRILDQGLCS 161 (682)
Q Consensus 83 ~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~ 161 (682)
.|+++++.+|...+.++...+++++++|++|++++ +.+.+..+ ..+.. +++|++|++++|.+.. +.+..+..
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~--N~l~~~~~~~~~~~-L~~L~~L~Ls~N~i~~----~~~~~l~~ 170 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK--NQIRSLYLHPSFGK-LNSLKSIDFSSNQIFL----VCEHELEP 170 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEES--CCCCCCCCCGGGGT-CSSCCEEEEESSCCCC----CCSGGGHH
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCC--CcccccccchhHhh-CCCCCEEECCCCcCCe----eCHHHccc
Confidence 99999999998887677666799999999999999 44444444 34555 9999999999999855 44447776
Q ss_pred C--CCCCEEEccCCCCcccCchhhcCCCC------CCEEeccCCccccccCCchhcc---cCCCcEEecCCCcCccc---
Q 045291 162 L--VHLQELRMADNDLRGSLPWCLANMTS------LRILDVSFNQLTGSISSSPLVH---LTSIEMLILSDNHFQIP--- 227 (682)
Q Consensus 162 l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~L~~n~l~~~i~~~~~~~---l~~L~~L~L~~n~l~~~--- 227 (682)
+ ++|+.|++++|.+.+..|..+..+++ |++|++++|.+++.+ +..+.. ..+++.+.++.+.....
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI-TGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTT-TSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhH-HHHHHhhcCcccccceecccccccccccc
Confidence 6 89999999999999888877776665 999999999988766 444433 35788888874433211
Q ss_pred -----cCcccccc--CCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCC
Q 045291 228 -----ISLEPLFN--HSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIK 300 (682)
Q Consensus 228 -----~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 300 (682)
.....+.. .++|+.|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~----------------------------~~~~~~~~l~~L~~L~L~~n~ 301 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFS----------------------------LNSRVFETLKDLKVLNLAYNK 301 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCE----------------------------ECSCCSSSCCCCCEEEEESCC
T ss_pred cccCCCChhhhhccccCCccEEECCCCcccc----------------------------cChhhhhcCCCCCEEECCCCc
Confidence 11112222 2678888888777653 345667888999999999999
Q ss_pred CcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCC
Q 045291 301 MNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIP 380 (682)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 380 (682)
+.+..|.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.+++.
T Consensus 302 i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~i-- 377 (844)
T 3j0a_A 302 INKIADEA-FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQTFKFLEKLQTLDLRDNALTTI-- 377 (844)
T ss_dssp CCEECTTT-TTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCSSCSCSCCCCCEEEEETCCSCCC--
T ss_pred CCCCChHH-hcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cChhhhcCCCCCCEEECCCCCCCcc--
Confidence 98766665 7899999999999999999888899999999999999999974 4444445599999999999998843
Q ss_pred cccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCC-ccccC
Q 045291 381 SSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIP-QSLSK 458 (682)
Q Consensus 381 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~ 458 (682)
..+++|+.|++++|++. .+|.. ..+++.|++++|++.+... ..+..+++|++|++++|.+.+..+ ..+..
T Consensus 378 ---~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 449 (844)
T 3j0a_A 378 ---HFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSE 449 (844)
T ss_dssp ---SSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCS
T ss_pred ---cCCCCcchhccCCCCcc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccccc
Confidence 33789999999999998 67653 5689999999999987533 234578999999999999986543 34667
Q ss_pred CCCCCEEeccCCcCC-----CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291 459 CSSLEGLYLNNNSLS-----GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK 533 (682)
Q Consensus 459 l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~ 533 (682)
+++|+.|++++|.+. +..+..|.++++|++|+|++|.+++..+..|.++++|+.|+|++|++++ ..+..+. +
T Consensus 450 ~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~--~ 526 (844)
T 3j0a_A 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLP--A 526 (844)
T ss_dssp CTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCC--S
T ss_pred CCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhh--c
Confidence 899999999999986 3445678899999999999999999999999999999999999999986 5666665 8
Q ss_pred CCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 534 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
+|+.|++++|++++..|..+ ++|+.+++++|++.|.|+-
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred cccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence 99999999999999888765 5799999999999998873
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-51 Score=454.76 Aligned_cols=522 Identities=19% Similarity=0.163 Sum_probs=429.1
Q ss_pred CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCc
Q 045291 5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS 84 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 84 (682)
+++++|+|++|.+ ....+..|.++++|++|++++|.+.++. +.++.++++|++|++++|.+++..|..+.++..|
T Consensus 32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~---~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIE---DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEEC---TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccC---HHHhhchhhcCEeECCCCcccccChhhcCCcccC
Confidence 6799999999999 6666678999999999999999999884 5589999999999999999998889999999999
Q ss_pred ceeeccCccccCcccCCCCCCCCCCCceeecCCCcccccc-chhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCC
Q 045291 85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT-SFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV 163 (682)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~ 163 (682)
+++++.+|...+..+.. ++++++|++|++++| .+.+ .+|..+.. +++|++|++++|.+.. +++..++.+.
T Consensus 107 ~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n--~l~~~~lp~~~~~-l~~L~~L~Ls~n~l~~----~~~~~~~~l~ 177 (606)
T 3vq2_A 107 ENLVAVETKLASLESFP--IGQLITLKKLNVAHN--FIHSCKLPAYFSN-LTNLVHVDLSYNYIQT----ITVNDLQFLR 177 (606)
T ss_dssp CEEECTTSCCCCSSSSC--CTTCTTCCEEECCSS--CCCCCCCCGGGGT-CTTCCEEECCSSCCCE----ECTTTTHHHH
T ss_pred CEEEccCCccccccccc--cCCCCCCCEEeCCCC--cccceechHhHhh-cCCCCEEEccCCccee----cChhhhhhhh
Confidence 99999999876533343 999999999999994 4443 46777777 9999999999999865 5555666665
Q ss_pred CCC----EEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCC
Q 045291 164 HLQ----ELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRL 239 (682)
Q Consensus 164 ~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L 239 (682)
+|+ +|++++|.+++..+..+... +|++|++++|.+.+...+..+..+++++.+++..+.+........+
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~------ 250 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF------ 250 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC------
T ss_pred ccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc------
Confidence 554 89999999997666666555 9999999999987555477889999999998876655422111100
Q ss_pred cEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEE
Q 045291 240 KIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETL 319 (682)
Q Consensus 240 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L 319 (682)
....+. ......++.+.+...+...+..|. +..+++|+.++++++.+. .+| . +..+++|++|
T Consensus 251 -----~~~~~~---------~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~-l~~~~~L~~L 312 (606)
T 3vq2_A 251 -----EPSIME---------GLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-D-VPKHFKWQSL 312 (606)
T ss_dssp -----CGGGGT---------TGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-C-CCTTCCCSEE
T ss_pred -----ChHHhh---------hhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-h-ccccccCCEE
Confidence 000000 111123344444334444445555 788899999999999986 556 3 6788999999
Q ss_pred EcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcC--CCcccCCCCCCCEEEccCC
Q 045291 320 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS--IPSSFGNMKFLQILDLSNN 397 (682)
Q Consensus 320 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l~~n 397 (682)
++++|.+..+ + .+ .+++|++|++++|...+..+ + ..+++|++|++++|.+++. .+..+..+++|++|++++|
T Consensus 313 ~l~~n~l~~l-p-~~-~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 313 SIIRCQLKQF-P-TL-DLPFLKSLTLTMNKGSISFK--K-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp EEESCCCSSC-C-CC-CCSSCCEEEEESCSSCEECC--C-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC
T ss_pred EcccccCccc-c-cC-CCCccceeeccCCcCccchh--h-ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC
Confidence 9999999554 3 45 89999999999996554442 2 2489999999999999866 3778899999999999999
Q ss_pred cCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCC-C
Q 045291 398 HLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSG-K 475 (682)
Q Consensus 398 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~ 475 (682)
.+. .++. .+..+++|+.|++++|++.+..+ ..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+ .
T Consensus 387 ~l~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 464 (606)
T 3vq2_A 387 GAI-IMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT 464 (606)
T ss_dssp SEE-EECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred ccc-cchh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc
Confidence 987 5664 34479999999999999998877 678899999999999999998899999999999999999999987 4
Q ss_pred chhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhc
Q 045291 476 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE 555 (682)
Q Consensus 476 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 555 (682)
+|..+..+++|++|++++|++++..|..|..+++|++|++++|++++ ..|..+..+++|++|++++|+++ .+|..+..
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-LDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-EEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC-cCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence 78889999999999999999999999999999999999999999997 77899999999999999999999 56666888
Q ss_pred CC-CCCEEEccCccCcccCCc
Q 045291 556 LK-TLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 556 l~-~L~~L~l~~n~l~~~~~~ 575 (682)
++ +|+.+++++|++.|.++.
T Consensus 543 l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCTTCCEEECCSCCCCCSSTT
T ss_pred hcccCcEEEccCCCcccCCcc
Confidence 87 599999999999998884
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-47 Score=417.26 Aligned_cols=517 Identities=18% Similarity=0.194 Sum_probs=365.3
Q ss_pred CcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcce
Q 045291 7 LKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLK 86 (682)
Q Consensus 7 L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 86 (682)
.+.++.++.++ ..+|..+ .+++++|++++|.++++. +.++.++++|++|++++|.+++..+..+.++..|++
T Consensus 9 ~~~~~c~~~~l---~~ip~~l--~~~l~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~ 80 (570)
T 2z63_A 9 NITYQCMELNF---YKIPDNL--PFSTKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80 (570)
T ss_dssp TTEEECCSSCC---SSCCSSS--CSSCCEEECCSCCCCEEC---TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CcEEEeCCCCc---cccCCCc--cccccEEEccCCccCccC---hhHhhCCCCceEEECCCCcCCccCcccccCchhCCE
Confidence 35667776665 5566644 367999999999988874 457888999999999999887666666666666666
Q ss_pred eeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCC
Q 045291 87 NLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQ 166 (682)
Q Consensus 87 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~ 166 (682)
+++.+|...+..+. +|+++++|++|++++|.. ....+..+.. +++|++|++++|.+.. .++|. .++++++|+
T Consensus 81 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l--~~l~~~~~~~-l~~L~~L~L~~n~l~~--~~lp~-~~~~l~~L~ 152 (570)
T 2z63_A 81 LILTGNPIQSLALG--AFSGLSSLQKLVAVETNL--ASLENFPIGH-LKTLKELNVAHNLIQS--FKLPE-YFSNLTNLE 152 (570)
T ss_dssp EECTTCCCCEECTT--TTTTCTTCCEEECTTSCC--CCSTTCSCTT-CTTCCEEECCSSCCCC--CCCCG-GGGGCTTCC
T ss_pred EeCcCCcCCccCHh--hhcCcccccccccccccc--ccCCCccccc-cccccEEecCCCccce--ecChh-hhcccCCCC
Confidence 66666654332222 366666666666666332 2111112333 6666666666666522 01333 566666666
Q ss_pred EEEccCCCCcccCchhhcCCCCC----CEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291 167 ELRMADNDLRGSLPWCLANMTSL----RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242 (682)
Q Consensus 167 ~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 242 (682)
+|++++|.+++..+..++.+++| ++|++++|.+. .+.+..+... +|+.|++++|..........+..+..++..
T Consensus 153 ~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~-~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~ 230 (570)
T 2z63_A 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230 (570)
T ss_dssp EEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEE
T ss_pred EEeCcCCccceecHHHccchhccchhhhhcccCCCCce-ecCHHHhccC-cceeEecccccccccchhhhhcCcccccee
Confidence 66666666665555555555555 56666666665 3324444433 566666666543221111223344444443
Q ss_pred EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCC--CCCEEEcCCC-CCcCcCchHHHhcCCCCcEE
Q 045291 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQH--DLEFVDLSHI-KMNGEFPTWLLENNAKLETL 319 (682)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~--~L~~L~ls~~-~~~~~~~~~~~~~~~~L~~L 319 (682)
.+....+... ..........+..+. .++.++++.+ .+.+..|.. +..+++|++|
T Consensus 231 ~l~~~~~~~~----------------------~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L 287 (570)
T 2z63_A 231 RLVLGEFRNE----------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSF 287 (570)
T ss_dssp EEEEEECCCC----------------------SSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEE
T ss_pred eeccccccCc----------------------hhhhhcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEE
Confidence 3322111100 000000111122222 2556677666 555566665 6788999999
Q ss_pred EcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcC
Q 045291 320 FLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHL 399 (682)
Q Consensus 320 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 399 (682)
++++|.+... +..+..+ +|++|++++|.+. .+|.. .+++|+.|++++|.+.+..+. ..+++|++|++++|.+
T Consensus 288 ~l~~~~l~~l-~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l 359 (570)
T 2z63_A 288 SLVSVTIERV-KDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL 359 (570)
T ss_dssp EEESCEECSC-CBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC
T ss_pred EecCccchhh-hhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc
Confidence 9999988764 4455666 9999999999997 66653 488999999999998866554 6789999999999998
Q ss_pred CCcC--chhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCc
Q 045291 400 TGEI--PEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKI 476 (682)
Q Consensus 400 ~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~ 476 (682)
.+.. +.. +.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..
T Consensus 360 ~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 360 SFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp BEEEEEEHH-HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred Ccccccccc-ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 7332 344 44799999999999999876655 8889999999999999987655 57889999999999999999888
Q ss_pred hhhhcCCCCCCeecCCCCcCc-CCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhc
Q 045291 477 PRWLGNLTRLQYIIMPNNHLE-GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE 555 (682)
Q Consensus 477 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 555 (682)
|..+.++++|++|++++|.++ +..|..+..+++|+.|++++|++++ ..|..+..+++|++|++++|++++..+..+..
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc-CChhhhhcccCCCEEeCCCCcCCCCCHHHhhc
Confidence 999999999999999999997 5688889999999999999999986 66889999999999999999999888888999
Q ss_pred CCCCCEEEccCccCcccCCc
Q 045291 556 LKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 556 l~~L~~L~l~~n~l~~~~~~ 575 (682)
+++|+.|++++|+++|.+|.
T Consensus 517 l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 517 LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCCEEECCSSCBCCCTTT
T ss_pred ccCCcEEEecCCcccCCCcc
Confidence 99999999999999999986
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-46 Score=412.44 Aligned_cols=514 Identities=20% Similarity=0.188 Sum_probs=413.5
Q ss_pred CCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCc
Q 045291 32 SLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLE 111 (682)
Q Consensus 32 ~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~ 111 (682)
..++.+.++.+++.+ |..+. +++++|++++|.+++..+..+.+++.|+++++.+|...+ ++.. +|+++++|+
T Consensus 8 ~~~~~~c~~~~l~~i----p~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~-~~~~l~~L~ 79 (570)
T 2z63_A 8 PNITYQCMELNFYKI----PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDG-AYQSLSHLS 79 (570)
T ss_dssp TTTEEECCSSCCSSC----CSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTT-TTTTCTTCC
T ss_pred CCcEEEeCCCCcccc----CCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcc-cccCchhCC
Confidence 346788888888887 55443 589999999999998888889999999999999987654 4432 489999999
Q ss_pred eeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc-cCchhhcCCCCCC
Q 045291 112 HLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLR 190 (682)
Q Consensus 112 ~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 190 (682)
+|++++| .+....+..+.. +++|++|++++|.+.. ++...++++++|++|++++|.+.+ .+|..|.++++|+
T Consensus 80 ~L~L~~n--~l~~~~~~~~~~-l~~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~ 152 (570)
T 2z63_A 80 TLILTGN--PIQSLALGAFSG-LSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152 (570)
T ss_dssp EEECTTC--CCCEECTTTTTT-CTTCCEEECTTSCCCC----STTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred EEeCcCC--cCCccCHhhhcC-cccccccccccccccc----CCCccccccccccEEecCCCccceecChhhhcccCCCC
Confidence 9999994 444444455555 9999999999999866 666678999999999999999987 4689999999999
Q ss_pred EEeccCCccccccCCchhcccCCC----cEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccc
Q 045291 191 ILDVSFNQLTGSISSSPLVHLTSI----EMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQL 266 (682)
Q Consensus 191 ~L~L~~n~l~~~i~~~~~~~l~~L----~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l 266 (682)
+|++++|.++ .+.+..+..+++| +.|++++|.+++..+ ..+... +|+.+++++|.....
T Consensus 153 ~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~-------------- 215 (570)
T 2z63_A 153 HLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLN-------------- 215 (570)
T ss_dssp EEECTTSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTT--------------
T ss_pred EEeCcCCccc-eecHHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEeccccccccc--------------
Confidence 9999999998 4546778888888 899999999885443 334433 788998888743311
Q ss_pred cceeccccCCCCCCCCcccccCCCCCEEEcCCCCCc-----CcCchHHHhcCC--CCcEEEcCCC-CCcccCCCCCCCCC
Q 045291 267 NRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMN-----GEFPTWLLENNA--KLETLFLIND-SIGGPFRLPIHPHR 338 (682)
Q Consensus 267 ~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~-----~~~~~~~~~~~~--~L~~L~l~~~-~l~~~~~~~~~~~~ 338 (682)
.++..+..+++++...+....+. ..++...+..+. .++.+++..+ .+.+..+..+..++
T Consensus 216 -------------~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 216 -------------VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp -------------HHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred -------------chhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 12333444455544443322111 122222233333 3567777776 66666677888899
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEE
Q 045291 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA 418 (682)
Q Consensus 339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 418 (682)
+|++|++++|.+. .+|..+.. + +|+.|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|+
T Consensus 283 ~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~ 353 (570)
T 2z63_A 283 NVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLD 353 (570)
T ss_dssp TCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEE
T ss_pred cccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEe
Confidence 9999999999997 67777665 5 9999999999998 4443 4788999999999998765554 4789999999
Q ss_pred ccCCcCCCcc--cccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCch-hhhcCCCCCCeecCCCCc
Q 045291 419 LSNNNLQGHM--FSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLTRLQYIIMPNNH 495 (682)
Q Consensus 419 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~ 495 (682)
+++|++.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432 (570)
T ss_dssp CCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC
T ss_pred CcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc
Confidence 9999998654 56677899999999999999865544 9999999999999999987655 578899999999999999
Q ss_pred CcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 496 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
+.+..+..+.++++|+.|++++|++++...|..+..+++|+.|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 99999999999999999999999997325788999999999999999999988899999999999999999999988888
Q ss_pred ccccccccCcccccCCCCCCCCCCC
Q 045291 576 WTAQFATFNESSYEGNIFLCGLPLP 600 (682)
Q Consensus 576 ~~~~~~~l~~~~~~~n~~~c~~~~~ 600 (682)
.+..+++++.+++.+|++.|+|+..
T Consensus 513 ~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 513 IFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HhhcccCCcEEEecCCcccCCCcch
Confidence 7888999999999999999998753
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-45 Score=404.68 Aligned_cols=493 Identities=20% Similarity=0.177 Sum_probs=334.9
Q ss_pred CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccC
Q 045291 4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP 83 (682)
Q Consensus 4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 83 (682)
|+...+.+.+++++ ..+|..+. ++|++|+|++|+++++. +.++.++++|++|++++|.+++..+..
T Consensus 4 C~~~~~c~~~~~~l---~~ip~~~~--~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~n~i~~~~~~~------ 69 (549)
T 2z81_A 4 CDASGVCDGRSRSF---TSIPSGLT--AAMKSLDLSFNKITYIG---HGDLRACANLQVLILKSSRINTIEGDA------ 69 (549)
T ss_dssp ECTTSEEECTTSCC---SSCCSCCC--TTCCEEECCSSCCCEEC---SSTTSSCTTCCEEECTTSCCCEECTTT------
T ss_pred CCCCceEECCCCcc---ccccccCC--CCccEEECcCCccCccC---hhhhhcCCcccEEECCCCCcCccChhh------
Confidence 34445667777776 56676553 78899999999888773 457888888999988888876443333
Q ss_pred cceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCC
Q 045291 84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV 163 (682)
Q Consensus 84 L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~ 163 (682)
|.++++|++|++++ +.+.+..+..+.. +++|++|++++|.+.. ..++. .+++++
T Consensus 70 --------------------~~~l~~L~~L~Ls~--n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~--~~~~~-~~~~l~ 123 (549)
T 2z81_A 70 --------------------FYSLGSLEHLDLSD--NHLSSLSSSWFGP-LSSLKYLNLMGNPYQT--LGVTS-LFPNLT 123 (549)
T ss_dssp --------------------TTTCTTCCEEECTT--SCCCSCCHHHHTT-CTTCCEEECTTCCCSS--SCSSC-SCTTCT
T ss_pred --------------------ccccccCCEEECCC--CccCccCHHHhcc-CCCCcEEECCCCcccc--cchhh-hhhccC
Confidence 55666666666666 3333333333444 6777777777776632 00232 566677
Q ss_pred CCCEEEccCCCCcccC-chhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291 164 HLQELRMADNDLRGSL-PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242 (682)
Q Consensus 164 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 242 (682)
+|++|++++|.+.+.+ +..|.++++|++|++++|.+++.+ +..+..+++|++|++++|.+. .++...+..+++|+.+
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L 201 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYL 201 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-TTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccC-hhhhhccccCceEecccCccc-ccchhhHhhcccccEE
Confidence 7777777776633333 356667777777777777766444 566666777777777776654 2222223456677777
Q ss_pred EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHH---HhcCCCCcEE
Q 045291 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWL---LENNAKLETL 319 (682)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~---~~~~~~L~~L 319 (682)
++++|.+.+.... .......+++|+.|++++|.+.+..+..+ +..+++|+.+
T Consensus 202 ~L~~n~l~~~~~~-------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l 256 (549)
T 2z81_A 202 ELRDTNLARFQFS-------------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV 256 (549)
T ss_dssp EEESCBCTTCCCC-------------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred EccCCcccccccc-------------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence 7777666532100 00111235567777777777665444432 3456677788
Q ss_pred EcCCCCCcccCC------CCCCCCCCccEEEccCCcCCCC-----CChhhhhcCCCceEEEecCCcCCcCCCcccCCCCC
Q 045291 320 FLINDSIGGPFR------LPIHPHRRLRFLDVSNNNFQGH-----MPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKF 388 (682)
Q Consensus 320 ~l~~~~l~~~~~------~~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 388 (682)
++++|.+.+... ..+..+.+++.|++.++.+... ++ .+....++|+.|++++|.+.......+..+++
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~-~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~ 335 (549)
T 2z81_A 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS-TVYSLLEKVKRITVENSKVFLVPCSFSQHLKS 335 (549)
T ss_dssp EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC-HHHHHSTTCCEEEEESSCCCCCCHHHHHHCTT
T ss_pred ccccccccccccccccchhhhhhhcccccccccccccchhhhcccch-hhhhhcccceEEEeccCccccCCHHHHhcCcc
Confidence 887776655321 2345677888888888866521 11 12233678888999888887433333457888
Q ss_pred CCEEEccCCcCCCcCchh--hhhCCCCCCEEEccCCcCCCccc--ccCCCCCCccEEECCCCcCcccCCccccCCCCCCE
Q 045291 389 LQILDLSNNHLTGEIPEY--LAVGCVNLNSLALSNNNLQGHMF--SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEG 464 (682)
Q Consensus 389 L~~L~l~~n~~~~~~~~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 464 (682)
|++|++++|++.+.++.. .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+. .+|..+..+++|++
T Consensus 336 L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRF 414 (549)
T ss_dssp CCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred ccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccE
Confidence 999999988887555432 23467888999999988886543 45677888999999999887 56777888889999
Q ss_pred EeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCc
Q 045291 465 LYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK 544 (682)
Q Consensus 465 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 544 (682)
|++++|.+.+ +|..+ .++|++|++++|++++.. ..+++|++|++++|+++. +|. ...+++|+.|++++|+
T Consensus 415 L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~--ip~-~~~l~~L~~L~Ls~N~ 484 (549)
T 2z81_A 415 LNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKT--LPD-ASLFPVLLVMKISRNQ 484 (549)
T ss_dssp EECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSS--CCC-GGGCTTCCEEECCSSC
T ss_pred EECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCc--CCC-cccCccCCEEecCCCc
Confidence 9999998873 34332 368899999999988653 578899999999999974 454 3568899999999999
Q ss_pred CCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 545 LNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 545 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
+++..|..+..+++|+.|++++|++.|.+|.
T Consensus 485 l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 485 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9988888888999999999999999988873
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-44 Score=395.26 Aligned_cols=482 Identities=15% Similarity=0.135 Sum_probs=321.3
Q ss_pred EeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEc
Q 045291 63 LTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSL 142 (682)
Q Consensus 63 L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L 142 (682)
.+.+++.++ .+|..+. ..++++++.+|...+..+. .|.++++|++|++++ +.+.+..+..+.. +++|++|++
T Consensus 10 c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~--n~i~~~~~~~~~~-l~~L~~L~L 81 (549)
T 2z81_A 10 CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHG--DLRACANLQVLILKS--SRINTIEGDAFYS-LGSLEHLDL 81 (549)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTT--SCCCEECTTTTTT-CTTCCEEEC
T ss_pred EECCCCccc-cccccCC--CCccEEECcCCccCccChh--hhhcCCcccEEECCC--CCcCccChhhccc-cccCCEEEC
Confidence 345555554 3333322 3566666666554332232 256666666666666 3333333333443 666666666
Q ss_pred cCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc-cCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCC
Q 045291 143 SGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSD 221 (682)
Q Consensus 143 ~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~ 221 (682)
++|.+.. +++..++++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+++..+..+++|++|++++
T Consensus 82 s~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 82 SDNHLSS----LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp TTSCCCS----CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CCCccCc----cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 6666644 444346666666666666666654 23455666666666666666543355445566666666666666
Q ss_pred CcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcc-cccCCCCCEEEcCCCC
Q 045291 222 NHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKF-LYHQHDLEFVDLSHIK 300 (682)
Q Consensus 222 n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-l~~~~~L~~L~ls~~~ 300 (682)
|.+++..+ ..+..+++|+.|+++.|.+.. .|.+ +..+++|+.|++++|.
T Consensus 158 n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~-----------------------------~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 158 LSLRNYQS-QSLKSIRDIHHLTLHLSESAF-----------------------------LLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp TTCCEECT-TTTTTCSEEEEEEEECSBSTT-----------------------------HHHHHHHSTTTBSEEEEESCB
T ss_pred CcccccCh-hhhhccccCceEecccCcccc-----------------------------cchhhHhhcccccEEEccCCc
Confidence 66654333 235555566666665554321 1222 2345667777777776
Q ss_pred CcCcC--chHHHhcCCCCcEEEcCCCCCcccCC----CCCCCCCCccEEEccCCcCCCCCC-----hhhhhcCCCceEEE
Q 045291 301 MNGEF--PTWLLENNAKLETLFLINDSIGGPFR----LPIHPHRRLRFLDVSNNNFQGHMP-----VEIGDILPSLFSFN 369 (682)
Q Consensus 301 ~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~-----~~~~~~l~~L~~L~ 369 (682)
+.+.. |..+...+++|+.|++++|.+.+... ..+..+++|+.+++++|.+.+... ......+++++.|+
T Consensus 208 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 287 (549)
T 2z81_A 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287 (549)
T ss_dssp CTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEE
T ss_pred cccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccc
Confidence 65421 22223445667777777666553221 122345567777777776543210 01112356777777
Q ss_pred ecCCcCCcC-----CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc---ccCCCCCCccEE
Q 045291 370 ISTNALHGS-----IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF---SRNFNLTNLKWL 441 (682)
Q Consensus 370 l~~n~i~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L 441 (682)
+.++.+... .+..+...++|++|++++|.+. .+|..++..+++|++|++++|++.+..+ ..+..+++|++|
T Consensus 288 l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp EESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred ccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 777765432 1112334568999999999997 8998887789999999999999997653 346789999999
Q ss_pred ECCCCcCcccCC--ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCc
Q 045291 442 LLEGNRFVGEIP--QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN 519 (682)
Q Consensus 442 ~l~~n~~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 519 (682)
++++|.+.+..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++... .+ .++|+.|++++|+
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~-~~--~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT-CI--PQTLEVLDVSNNN 442 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-TS--CTTCSEEECCSSC
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc-hh--cCCceEEECCCCC
Confidence 999999986532 56888999999999999998 678788899999999999999985433 22 2689999999999
Q ss_pred CCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 520 ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 520 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
+++ . ...+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|.++..+..++.+++++|++.|+|+
T Consensus 443 l~~-~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 443 LDS-F----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSC-C----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred hhh-h----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 986 2 257899999999999999 5565 4678999999999999999888888999999999999999999987
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.1e-46 Score=409.45 Aligned_cols=387 Identities=17% Similarity=0.221 Sum_probs=230.7
Q ss_pred hhHHHhhcCCCCcEEEccCCCCCCC--CC------------Cccccccc--CCCCCCEEEccCCCCcccCchhhcCCCCC
Q 045291 126 FLQIIGESMPSLKYLSLSGSILGTN--SS------------RILDQGLC--SLVHLQELRMADNDLRGSLPWCLANMTSL 189 (682)
Q Consensus 126 ~~~~l~~~l~~L~~L~L~~~~l~~~--~~------------~i~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 189 (682)
+|..+.. +++|++|+|++|.+... .. .+|. .++ ++++|++|++++|.+.+.+|..++++++|
T Consensus 198 ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 5555554 66666666666655220 00 0332 444 55555555555555555555555555555
Q ss_pred CEEeccCCc-ccc-ccCCchhccc------CCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCC
Q 045291 190 RILDVSFNQ-LTG-SISSSPLVHL------TSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTA 261 (682)
Q Consensus 190 ~~L~L~~n~-l~~-~i~~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 261 (682)
++|++++|+ +++ .+ |..+..+ ++|++|++++|.++ .
T Consensus 276 ~~L~Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~l~-~---------------------------------- 319 (636)
T 4eco_A 276 QLINVACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNNLK-T---------------------------------- 319 (636)
T ss_dssp CEEECTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSCCS-S----------------------------------
T ss_pred CEEECcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCcCC-c----------------------------------
Confidence 555555555 554 34 3444433 45555555555444 2
Q ss_pred CcccccceeccccCCCCCCCCc--ccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCC
Q 045291 262 PNFQLNRLLLSSSYGDGFIFPK--FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRR 339 (682)
Q Consensus 262 ~~~~l~~l~l~~~~~~~~~~~~--~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 339 (682)
+|. .+..+++|+.|++++|.+.+.+| . +..+++|++|++++|.+. ..+..+..+++
T Consensus 320 -------------------ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 377 (636)
T 4eco_A 320 -------------------FPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYNQIT-EIPANFCGFTE 377 (636)
T ss_dssp -------------------CCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSSEEE-ECCTTSEEECT
T ss_pred -------------------cCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCCccc-cccHhhhhhcc
Confidence 233 44555566666666666655555 2 455666666666666666 23344566666
Q ss_pred -ccEEEccCCcCCCCCChhhhh-cCCCceEEEecCCcCCcCCCcccC-------CCCCCCEEEccCCcCCCcCchhhhhC
Q 045291 340 -LRFLDVSNNNFQGHMPVEIGD-ILPSLFSFNISTNALHGSIPSSFG-------NMKFLQILDLSNNHLTGEIPEYLAVG 410 (682)
Q Consensus 340 -L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~ 410 (682)
|++|++++|.++ .+|..+.. .+++|+.|++++|.+.+..|..|. .+++|++|++++|.+. .+|..++..
T Consensus 378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~ 455 (636)
T 4eco_A 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFST 455 (636)
T ss_dssp TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHT
T ss_pred cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHcc
Confidence 777777777776 66654433 134788888888888877777776 6778888888888887 788877777
Q ss_pred CCCCCEEEccCCcCCCcccccCCCCC-------CccEEECCCCcCcccCCcccc--CCCCCCEEeccCCcCCCCchhhhc
Q 045291 411 CVNLNSLALSNNNLQGHMFSRNFNLT-------NLKWLLLEGNRFVGEIPQSLS--KCSSLEGLYLNNNSLSGKIPRWLG 481 (682)
Q Consensus 411 ~~~L~~L~l~~n~l~~~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~ 481 (682)
+++|+.|++++|+++......+.... +|++|++++|.+. .+|..+. .+++|++|++++|++.+ +|..+.
T Consensus 456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~ 533 (636)
T 4eco_A 456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533 (636)
T ss_dssp TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence 88888888888888744333332222 5666666666655 3444443 55556666666665554 455555
Q ss_pred CCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCE
Q 045291 482 NLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEV 561 (682)
Q Consensus 482 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 561 (682)
.+++|++|+|++|+ ++++|++.+ .+|..+..+++|++|++++|++. .+|..+. ++|+.
T Consensus 534 ~l~~L~~L~Ls~N~------------------~ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~ 591 (636)
T 4eco_A 534 NSSTLKGFGIRNQR------------------DAQGNRTLR-EWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISV 591 (636)
T ss_dssp GCSSCCEEECCSCB------------------CTTCCBCCC-CCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCE
T ss_pred cCCCCCEEECCCCc------------------ccccCcccc-cChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCE
Confidence 55555555554443 235666665 56777777888888888888884 5665544 67888
Q ss_pred EEccCccCcccCCccccc--ccccCcccccCCCCCCCCC
Q 045291 562 FSVAYNNLSGEIPEWTAQ--FATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 562 L~l~~n~l~~~~~~~~~~--~~~l~~~~~~~n~~~c~~~ 598 (682)
|++++|++.+.....+.. ......+.+......|+|+
T Consensus 592 L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~C~ 630 (636)
T 4eco_A 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630 (636)
T ss_dssp EECCSCTTCEEECTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred EECcCCCCccccHHhcchhhhcccceeecCCccccCCCc
Confidence 888888877644332222 1222344445555556654
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.1e-44 Score=399.44 Aligned_cols=544 Identities=21% Similarity=0.227 Sum_probs=277.0
Q ss_pred CccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccC
Q 045291 21 SKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLR 100 (682)
Q Consensus 21 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~ 100 (682)
..+|..+ .+++++||||+|+|+.+. +.+|.++++|++|+|++|.+++..+..
T Consensus 44 ~~vP~~l--p~~~~~LdLs~N~i~~l~---~~~f~~l~~L~~L~Ls~N~i~~i~~~~----------------------- 95 (635)
T 4g8a_A 44 YKIPDNL--PFSTKNLDLSFNPLRHLG---SYSFFSFPELQVLDLSRCEIQTIEDGA----------------------- 95 (635)
T ss_dssp SSCCSSS--CTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTCCCCEECTTT-----------------------
T ss_pred CccCCCC--CcCCCEEEeeCCCCCCCC---HHHHhCCCCCCEEECCCCcCCCcChhH-----------------------
Confidence 3445433 236677777777776662 336667777777777776665433333
Q ss_pred CCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc-cC
Q 045291 101 GQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SL 179 (682)
Q Consensus 101 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~ 179 (682)
|.++++|++|+|++|+ +. .++...+.++++|++|++++|.+.. +++..|+++++|++|++++|.+++ ..
T Consensus 96 ---f~~L~~L~~L~Ls~N~--l~-~l~~~~f~~L~~L~~L~Ls~N~l~~----l~~~~~~~L~~L~~L~Ls~N~l~~~~~ 165 (635)
T 4g8a_A 96 ---YQSLSHLSTLILTGNP--IQ-SLALGAFSGLSSLQKLVAVETNLAS----LENFPIGHLKTLKELNVAHNLIQSFKL 165 (635)
T ss_dssp ---TTTCTTCCEEECTTCC--CC-EECGGGGTTCTTCCEEECTTSCCCC----STTCCCTTCTTCCEEECCSSCCCCCCC
T ss_pred ---hcCCCCCCEEEccCCc--CC-CCCHHHhcCCCCCCEEECCCCcCCC----CChhhhhcCcccCeeccccCccccCCC
Confidence 4555555555555532 22 2333222225555555555555544 444445555555555555555543 23
Q ss_pred chhhcCCCCCCEEeccCCccccccCCchhcccCCCc----EEecCCCcCccccCccccccCCCCcEEEccCCcccccccc
Q 045291 180 PWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIE----MLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQ 255 (682)
Q Consensus 180 ~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 255 (682)
|..+..+++|++|++++|+++ .+.+..+..+.+++ .++++.|.++.. +.. ......++.+++.+|........
T Consensus 166 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i-~~~-~~~~~~~~~l~l~~n~~~~~~~~ 242 (635)
T 4g8a_A 166 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPG-AFKEIRLHKLTLRNNFDSLNVMK 242 (635)
T ss_dssp CGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCCCEEECTTCCCCEE-CTT-TTTTCEEEEEEEESCCSSHHHHH
T ss_pred chhhccchhhhhhcccCcccc-ccccccccchhhhhhhhhhhhcccCccccc-Ccc-cccchhhhhhhhhcccccccccc
Confidence 455555555555555555555 23244444433322 455555555421 111 11222334444444432211100
Q ss_pred cCCCCCCcccccceeccc---cCCCCCCCCcccccCCCCCEEEcCCCCCcC---cCchHHHhcCCCCcEEEcCCCCCccc
Q 045291 256 SHSLTAPNFQLNRLLLSS---SYGDGFIFPKFLYHQHDLEFVDLSHIKMNG---EFPTWLLENNAKLETLFLINDSIGGP 329 (682)
Q Consensus 256 ~~~~~~~~~~l~~l~l~~---~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~---~~~~~~~~~~~~L~~L~l~~~~l~~~ 329 (682)
..........+..+.... ...........+.....+...++..+.... ..+.. +.....++.+.+.++.+...
T Consensus 243 ~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~~~~ 321 (635)
T 4g8a_A 243 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDL-FNCLTNVSSFSLVSVTIERV 321 (635)
T ss_dssp HHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTT-TGGGTTCSEEEEESCEEEEC
T ss_pred hhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhh-hhhhcccccccccccccccc
Confidence 000000001111111100 001111112222333333433333322111 11111 33445566666665555443
Q ss_pred CCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCC--cCchhh
Q 045291 330 FRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG--EIPEYL 407 (682)
Q Consensus 330 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~ 407 (682)
.. +.....++.|++.+|.+.+ ++.. .++.|+.+++..|...... ....+++|+.+++++|.+.. ..+...
T Consensus 322 ~~--~~~~~~L~~L~l~~~~~~~-~~~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 393 (635)
T 4g8a_A 322 KD--FSYNFGWQHLELVNCKFGQ-FPTL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSD 393 (635)
T ss_dssp GG--GGSCCCCSEEEEESCEESS-CCCC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHH
T ss_pred cc--cccchhhhhhhcccccccC-cCcc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccch
Confidence 22 2334456666666666542 2211 2456666666666554322 23355666666666665531 122222
Q ss_pred hhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccC-CccccCCCCCCEEeccCCcCCCCchhhhcCCCCC
Q 045291 408 AVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEI-PQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRL 486 (682)
Q Consensus 408 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 486 (682)
. .+.+|+.+++..+..... +..+..+++|+.++++++...... ...+..+++++.++++.|.+.+..+..+..+++|
T Consensus 394 ~-~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 394 F-GTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp H-SCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred h-hhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 2 456666666666655432 233445666666666665544332 2445566666666666666666666666666666
Q ss_pred CeecCCCCcC-cCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291 487 QYIIMPNNHL-EGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA 565 (682)
Q Consensus 487 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 565 (682)
+.|++++|.+ .+..|..|..+++|++|+|++|++++ ..|..|+++++|++|+|++|++++..|..+..+++|++|+++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence 6666666653 23455566666666666666666664 455666666666666666666666666666666666666666
Q ss_pred CccCcccCCcccccc-cccCcccccCCCCCCCCCC-------------------CCCCCCCCCCCCCCCCCC
Q 045291 566 YNNLSGEIPEWTAQF-ATFNESSYEGNIFLCGLPL-------------------PICISPATMPEASIGNEQ 617 (682)
Q Consensus 566 ~n~l~~~~~~~~~~~-~~l~~~~~~~n~~~c~~~~-------------------~~~~~~~~~~~~~~~~~~ 617 (682)
+|++++..|+.+..+ .+++.+++++|||.|+|.+ ..|.+|+..++.++...+
T Consensus 551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence 666666666655554 4566666666666666643 257778877776554443
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.6e-44 Score=388.88 Aligned_cols=280 Identities=21% Similarity=0.233 Sum_probs=134.1
Q ss_pred ccccCCCCCEEEcCCCC-------CcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCC---CCCCCccEEEccCCcCCCC
Q 045291 284 FLYHQHDLEFVDLSHIK-------MNGEFPTWLLENNAKLETLFLINDSIGGPFRLPI---HPHRRLRFLDVSNNNFQGH 353 (682)
Q Consensus 284 ~l~~~~~L~~L~ls~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l~~n~~~~~ 353 (682)
.+..+++|+.+++++|. +.+.+|. +..+++|+.|+++++.+.+.....+ ...++|++|++++|.+.+.
T Consensus 185 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 262 (520)
T 2z7x_B 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAK--LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ 262 (520)
T ss_dssp CCTTCSEEEECCEEECCSTTTTHHHHHHHHG--GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred hhhcccceeeccccccccccccceeecchhh--hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence 34556677777777775 3333331 4555666666665555443111000 0023455555555555544
Q ss_pred CChhhh----hcCCCceEEEecCCcCCcCCC-cccCCC---CCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC
Q 045291 354 MPVEIG----DILPSLFSFNISTNALHGSIP-SSFGNM---KFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ 425 (682)
Q Consensus 354 ~~~~~~----~~l~~L~~L~l~~n~i~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 425 (682)
+|..++ ..+++|+.+++++|.+ ..| ..+..+ ++|++|++++|.+. .++. ...+++|++|++++|+++
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~ 337 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--PSKISPFLHLDFSNNLLT 337 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--CSSCCCCCEEECCSSCCC
T ss_pred cccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccc-cccc--hhhCCcccEEEeECCccC
Confidence 554441 2245555555555554 122 222222 34555555555543 2210 123455555555555555
Q ss_pred CcccccCCCCCCccEEECCCCcCcc--cCCccccCCCCCCEEeccCCcCCCCchh-hhcCCCCCCeecCCCCcCcCCcch
Q 045291 426 GHMFSRNFNLTNLKWLLLEGNRFVG--EIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQYIIMPNNHLEGPIPV 502 (682)
Q Consensus 426 ~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~ 502 (682)
+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..+.
T Consensus 338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGG
T ss_pred hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhh
Confidence 5444555555555555555555543 2334455555555555555555542332 244455555555555555444433
Q ss_pred hccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291 503 EFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 503 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
.+. ++|+.|++++|+++. +|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.|+
T Consensus 418 ~l~--~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 418 CLP--PRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp SCC--TTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhc--ccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 332 455555555555542 33333455555555555555553222234455555555555555555443
No 18
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.8e-43 Score=391.53 Aligned_cols=544 Identities=20% Similarity=0.189 Sum_probs=396.5
Q ss_pred CCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCc
Q 045291 5 RKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPS 84 (682)
Q Consensus 5 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 84 (682)
+++|+|+|++|.+ ....+.+|.++++|++|||++|+|+++. +.+|.++++|++|+|++|+++...+..+.++.+|
T Consensus 52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~---~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEEC---TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcC---hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 3799999999999 5555678999999999999999999884 4589999999999999999987777778888888
Q ss_pred ceeeccCccccCcccCCCCCCCCCCCceeecCCCcccccc-chhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCC
Q 045291 85 LKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT-SFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLV 163 (682)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~ 163 (682)
+++++.+|...+ ++.. .|+++++|++|++++|. +.. ..|..+.. +++|++|++++|.+.. +++.++..+.
T Consensus 127 ~~L~Ls~N~l~~-l~~~-~~~~L~~L~~L~Ls~N~--l~~~~~~~~~~~-l~~L~~L~L~~N~l~~----~~~~~l~~L~ 197 (635)
T 4g8a_A 127 QKLVAVETNLAS-LENF-PIGHLKTLKELNVAHNL--IQSFKLPEYFSN-LTNLEHLDLSSNKIQS----IYCTDLRVLH 197 (635)
T ss_dssp CEEECTTSCCCC-STTC-CCTTCTTCCEEECCSSC--CCCCCCCGGGGG-CTTCCEEECCSSCCCE----ECGGGGHHHH
T ss_pred CEEECCCCcCCC-CChh-hhhcCcccCeeccccCc--cccCCCchhhcc-chhhhhhcccCccccc----cccccccchh
Confidence 888888887654 4432 47888888888888843 332 23444444 8888888888888754 4444554443
Q ss_pred C----CCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccc-----cCccccc
Q 045291 164 H----LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIP-----ISLEPLF 234 (682)
Q Consensus 164 ~----L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~ 234 (682)
+ +..++++.|.+....+..+ ....++.+++.+|.....+.+..+..+..++...+..+..... .....+.
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 3 3367777787775444443 3345667777777654333344566666666655543322111 1111122
Q ss_pred cCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCC
Q 045291 235 NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA 314 (682)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~ 314 (682)
....+....+..+... ......+..+....+++.+++..+.+.... + +....
T Consensus 277 ~~~~l~~~~l~~~~~~-------------------------~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~--~~~~~ 328 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLD-------------------------YYLDGIIDLFNCLTNVSSFSLVSVTIERVK-D--FSYNF 328 (635)
T ss_dssp GGGGSEEEEEEEECCC-------------------------SCEEECTTTTGGGTTCSEEEEESCEEEECG-G--GGSCC
T ss_pred cccchhhhhhhhhhhc-------------------------ccccchhhhhhhhccccccccccccccccc-c--cccch
Confidence 2233333333222111 111122334556678889999888876432 2 45678
Q ss_pred CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCc--CCCcccCCCCCCCEE
Q 045291 315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHG--SIPSSFGNMKFLQIL 392 (682)
Q Consensus 315 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L 392 (682)
.++.|++.++.+..... ..+..|+.+++..|....... . ..+++|+.+++++|.+.. ..+..+..+.+|+++
T Consensus 329 ~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L 402 (635)
T 4g8a_A 329 GWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNAFS--E-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402 (635)
T ss_dssp CCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCBCC--C-CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEE
T ss_pred hhhhhhcccccccCcCc---ccchhhhhcccccccCCCCcc--c-ccccccccchhhccccccccccccchhhhhhhhhh
Confidence 89999999998876543 346788999999988763322 1 238899999999998863 345566788899999
Q ss_pred EccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCc-ccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCc
Q 045291 393 DLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH-MFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNS 471 (682)
Q Consensus 393 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 471 (682)
++..+... .++..+ ..+++|+.+++..+..... ....+..+++++.++++.|.+.+..+..+..+++|+.|++++|.
T Consensus 403 ~~~~~~~~-~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~ 480 (635)
T 4g8a_A 403 DLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 480 (635)
T ss_dssp ECCSCSEE-EECSCC-TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred hccccccc-cccccc-cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcc
Confidence 99999876 444433 4789999999998876544 34567789999999999999998889999999999999999997
Q ss_pred CC-CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291 472 LS-GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP 550 (682)
Q Consensus 472 ~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 550 (682)
+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++ ..+..|+++++|+.|++++|++++..|
T Consensus 481 ~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 481 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCB-CCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred cccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCC-CChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 54 4577889999999999999999999999999999999999999999987 778899999999999999999999999
Q ss_pred hhhhcC-CCCCEEEccCccCcccCCc-ccccc-cccCcccccCCCCCCCCCCC
Q 045291 551 HQLVEL-KTLEVFSVAYNNLSGEIPE-WTAQF-ATFNESSYEGNIFLCGLPLP 600 (682)
Q Consensus 551 ~~l~~l-~~L~~L~l~~n~l~~~~~~-~~~~~-~~l~~~~~~~n~~~c~~~~~ 600 (682)
+.+..+ ++|+.|++++|+|.|.|.- |+..| ..-...........|..|..
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~ 612 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 612 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTT
T ss_pred HHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchH
Confidence 999888 6899999999999998863 22222 11111112233467877654
No 19
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.4e-44 Score=386.45 Aligned_cols=465 Identities=17% Similarity=0.161 Sum_probs=312.6
Q ss_pred cEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCccee
Q 045291 8 KSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKN 87 (682)
Q Consensus 8 ~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l 87 (682)
++|++++|++ ..+|..+. ++|++|++++|.+.++. +..+.++++|++|++++|.+++..|..+.++..|+++
T Consensus 3 ~~l~ls~n~l---~~ip~~~~--~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGL---IHVPKDLS--QKTTILNISQNYISELW---TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCC---SSCCCSCC--TTCSEEECCSSCCCCCC---HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred ceEecCCCCc---cccccccc--ccccEEECCCCcccccC---hhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence 6789999988 35777665 89999999999988873 3578889999999999998876666666655555555
Q ss_pred eccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCE
Q 045291 88 LSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQE 167 (682)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~ 167 (682)
++.+|... .+|.. .+++|++|++++ |.+.. ..+|. .++++++|++
T Consensus 75 ~Ls~N~l~-~lp~~----~l~~L~~L~L~~---------------------------N~l~~--~~~p~-~~~~l~~L~~ 119 (520)
T 2z7x_B 75 DLSHNKLV-KISCH----PTVNLKHLDLSF---------------------------NAFDA--LPICK-EFGNMSQLKF 119 (520)
T ss_dssp ECCSSCCC-EEECC----CCCCCSEEECCS---------------------------SCCSS--CCCCG-GGGGCTTCCE
T ss_pred ecCCCcee-ecCcc----ccCCccEEeccC---------------------------Ccccc--ccchh-hhccCCcceE
Confidence 55555443 34431 445555555555 44421 00222 4444444555
Q ss_pred EEccCCCCcccCchhhcCCCCC--CEEeccCCcc--ccccCCchhcccC-CCcEEecCCCcCccccCccccccCCCCcEE
Q 045291 168 LRMADNDLRGSLPWCLANMTSL--RILDVSFNQL--TGSISSSPLVHLT-SIEMLILSDNHFQIPISLEPLFNHSRLKIF 242 (682)
Q Consensus 168 L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 242 (682)
|++++|.+++ ..+..+++| ++|++++|.+ .+.. +..+..+. +...+++++|.+.+.++...+..+++|+.+
T Consensus 120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~-~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKED-PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp EEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCC-TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred EEecCcccch---hhccccccceeeEEEeecccccccccc-cccccccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 5554444443 223334444 5555555444 3222 23333322 122344444444443333334445555555
Q ss_pred EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHh--cCCCCcEEE
Q 045291 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLE--NNAKLETLF 320 (682)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~--~~~~L~~L~ 320 (682)
++++|....... ...+.+| .+..+++|+.|+++++.+.+..+..+.. ..++|++|+
T Consensus 196 ~l~~n~~~~~~~---------------------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 196 NIKCVLEDNKCS---------------------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp CEEECCSTTTTH---------------------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred cccccccccccc---------------------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 554443100000 0000111 3456667777777777665433322211 245788888
Q ss_pred cCCCCCcccCCCCC-----CCCCCccEEEccCCcCCCCCC-hhhhhc--CCCceEEEecCCcCCcCCCcccCCCCCCCEE
Q 045291 321 LINDSIGGPFRLPI-----HPHRRLRFLDVSNNNFQGHMP-VEIGDI--LPSLFSFNISTNALHGSIPSSFGNMKFLQIL 392 (682)
Q Consensus 321 l~~~~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~-~~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 392 (682)
+++|.+.+..+..+ ..++.|+.+++++|.+ .+| ..+... -++|+.|++++|.+.... .+..+++|++|
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 88888876666665 7899999999999998 566 444432 257999999999987433 23688999999
Q ss_pred EccCCcCCCcCchhhhhCCCCCCEEEccCCcCCC--cccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccC
Q 045291 393 DLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG--HMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNN 469 (682)
Q Consensus 393 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~ 469 (682)
++++|++.+.++..+ ..+++|++|++++|++++ ..+..+..+++|++|++++|.+.+.+| ..+..+++|++|++++
T Consensus 330 ~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 330 DFSNNLLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408 (520)
T ss_dssp ECCSSCCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCS
T ss_pred EeECCccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcC
Confidence 999999986666655 479999999999999997 445678899999999999999997455 4588899999999999
Q ss_pred CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc
Q 045291 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM 549 (682)
Q Consensus 470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 549 (682)
|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|++++ ..+..+..+++|++|++++|++....
T Consensus 409 N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 409 NILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp SCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccC
Confidence 999877776554 79999999999999 566666699999999999999985 44445999999999999999998654
Q ss_pred h
Q 045291 550 P 550 (682)
Q Consensus 550 ~ 550 (682)
+
T Consensus 485 ~ 485 (520)
T 2z7x_B 485 P 485 (520)
T ss_dssp H
T ss_pred C
Confidence 3
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-42 Score=384.39 Aligned_cols=280 Identities=17% Similarity=0.125 Sum_probs=157.6
Q ss_pred ccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCC-ccEEEccCCcCCCCCChhhhh-c
Q 045291 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRR-LRFLDVSNNNFQGHMPVEIGD-I 361 (682)
Q Consensus 284 ~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~~~~-~ 361 (682)
.+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+|..+.. .
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 4445555555555555555 444 2455555555555555555 23334555555 666666666665 55543322 1
Q ss_pred CCCceEEEecCCcCCcCCCccc---C--CCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCC-
Q 045291 362 LPSLFSFNISTNALHGSIPSSF---G--NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNL- 435 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l- 435 (682)
.++|+.|++++|.+.+..|... . .+++|++|++++|.+. .+|..++..+++|+.|++++|++.......+...
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~ 721 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKD 721 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcccc
Confidence 1236677777776665444221 1 2346777777777776 6777766667777777777777764333333222
Q ss_pred ------CCccEEECCCCcCcccCCcccc--CCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCC
Q 045291 436 ------TNLKWLLLEGNRFVGEIPQSLS--KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQL 507 (682)
Q Consensus 436 ------~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 507 (682)
++|+.|++++|.+. .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+|++|+
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------ 787 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------ 787 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------
T ss_pred ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------
Confidence 25666666666665 4444444 56666666666666654 45555556666666665532
Q ss_pred CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCccc
Q 045291 508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESS 587 (682)
Q Consensus 508 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~ 587 (682)
++++|++.+ .+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|++++|++....+..++.........
T Consensus 788 ------~ls~N~l~~-~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~ 857 (876)
T 4ecn_A 788 ------DAEGNRILR-QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYV 857 (876)
T ss_dssp ------CTTCCBCCC-CCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCE
T ss_pred ------Ccccccccc-cChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchhee
Confidence 223455554 5566666666777777777766 35555443 4677777777766654444444433334444
Q ss_pred ccCCCC
Q 045291 588 YEGNIF 593 (682)
Q Consensus 588 ~~~n~~ 593 (682)
+.+|+.
T Consensus 858 L~~n~~ 863 (876)
T 4ecn_A 858 LLYDKT 863 (876)
T ss_dssp EECCTT
T ss_pred ecCCCc
Confidence 444443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-41 Score=381.51 Aligned_cols=387 Identities=17% Similarity=0.179 Sum_probs=262.4
Q ss_pred ccccCcccCCCCCCCCCCCceeecCCCcccccc-----------------chhHHHh--hcCCCCcEEEccCCCC-CCCC
Q 045291 92 YCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNT-----------------SFLQIIG--ESMPSLKYLSLSGSIL-GTNS 151 (682)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----------------~~~~~l~--~~l~~L~~L~L~~~~l-~~~~ 151 (682)
|...+ +|.. ++++++|++|++++ +.+.+ .+|..+. . +++|++|+|++|.+ +.
T Consensus 435 N~L~~-IP~~--l~~L~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~-L~~L~~L~Ls~N~l~~~-- 506 (876)
T 4ecn_A 435 NRITF-ISKA--IQRLTKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENEELSWSN-LKDLTDVELYNCPNMTQ-- 506 (876)
T ss_dssp CEEEE-ECGG--GGGCTTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGG-CTTCCEEEEESCTTCCS--
T ss_pred Ccccc-hhHH--HhcCCCCCEEECcC--CcCCCCcccccccccccccccccCChhhhhcc-CCCCCEEECcCCCCCcc--
Confidence 34443 7765 88999999999999 44555 3777764 5 99999999999987 55
Q ss_pred CCcccccccCCCCCCEEEccCCC-Ccc-cCchhhcCCC-------CCCEEeccCCccccccCCc--hhcccCCCcEEecC
Q 045291 152 SRILDQGLCSLVHLQELRMADND-LRG-SLPWCLANMT-------SLRILDVSFNQLTGSISSS--PLVHLTSIEMLILS 220 (682)
Q Consensus 152 ~~i~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~l~~~i~~~--~~~~l~~L~~L~L~ 220 (682)
+|. .++++++|++|++++|. +++ .+|..++.++ +|++|++++|.++ .+ |. .+..+++|+.|+++
T Consensus 507 --iP~-~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i-p~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 507 --LPD-FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF-PASASLQKMVKLGLLDCV 581 (876)
T ss_dssp --CCG-GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC-CCHHHHTTCTTCCEEECT
T ss_pred --ChH-HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc-CChhhhhcCCCCCEEECC
Confidence 775 89999999999999998 887 7887666554 9999999999999 88 56 89999999999999
Q ss_pred CCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCC-CCEEEcCCC
Q 045291 221 DNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHD-LEFVDLSHI 299 (682)
Q Consensus 221 ~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~-L~~L~ls~~ 299 (682)
+|.++ .++ .+..+++|+.|++++|.+. .+|..+..+++ |+.|++++|
T Consensus 582 ~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-----------------------------~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 582 HNKVR-HLE--AFGTNVKLTDLKLDYNQIE-----------------------------EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp TSCCC-BCC--CCCTTSEESEEECCSSCCS-----------------------------CCCTTSCEECTTCCEEECCSS
T ss_pred CCCcc-cch--hhcCCCcceEEECcCCccc-----------------------------cchHHHhhccccCCEEECcCC
Confidence 99998 555 5778888888888887765 24555666666 777777777
Q ss_pred CCcCcCchHHHhcCC--CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhh-cCCCceEEEecCCcCC
Q 045291 300 KMNGEFPTWLLENNA--KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD-ILPSLFSFNISTNALH 376 (682)
Q Consensus 300 ~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~i~ 376 (682)
.+. .+|.. +...+ +|+.|++++|.+.+..+... ..... .+++|+.|++++|.+.
T Consensus 630 ~L~-~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~l~---------------------~~l~~~~~~~L~~L~Ls~N~L~ 686 (876)
T 4ecn_A 630 KLK-YIPNI-FNAKSVYVMGSVDFSYNKIGSEGRNIS---------------------CSMDDYKGINASTVTLSYNEIQ 686 (876)
T ss_dssp CCC-SCCSC-CCTTCSSCEEEEECCSSCTTTTSSSCS---------------------SCTTTCCCCCEEEEECCSSCCC
T ss_pred CCC-cCchh-hhccccCCCCEEECcCCcCCCccccch---------------------hhhccccCCCcCEEEccCCcCC
Confidence 776 55543 22222 25555555555544322110 00000 1234555555555555
Q ss_pred cCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCC-------CCCCEEEccCCcCCCcccccCC--CCCCccEEECCCCc
Q 045291 377 GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGC-------VNLNSLALSNNNLQGHMFSRNF--NLTNLKWLLLEGNR 447 (682)
Q Consensus 377 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~ 447 (682)
...+..+..+++|++|++++|++. .+|...+... ++|+.|++++|+++ .+|..+. .+++|+.|++++|.
T Consensus 687 ~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 687 KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNC 764 (876)
T ss_dssp SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSC
T ss_pred ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCC
Confidence 322223334555555555555554 4554444322 26777777777666 3444444 67778888888888
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291 448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS 527 (682)
Q Consensus 448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 527 (682)
+.+ +|..+..+++|+.|++++|+ ++++|.+.+..|..+..+++|+.|+|++|++. .+|.
T Consensus 765 L~~-lp~~l~~L~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~--~Ip~ 823 (876)
T 4ecn_A 765 FSS-FPTQPLNSSQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR--KVDE 823 (876)
T ss_dssp CSS-CCCGGGGCTTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC--BCCS
T ss_pred CCc-cchhhhcCCCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCCC--ccCH
Confidence 775 57777788888888888775 55667777777777777777777777777774 3555
Q ss_pred hccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291 528 TFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571 (682)
Q Consensus 528 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 571 (682)
.+. ++|+.|+|++|++....+..+.....+..+.+.+|++..
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~ 865 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred hhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCccc
Confidence 443 577778888777776655555554455666677776653
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.5e-41 Score=373.92 Aligned_cols=414 Identities=18% Similarity=0.247 Sum_probs=340.3
Q ss_pred CCCcEEEccCCCC-CCCCCCcccccccCCCCCCEEEccCCCCc------c---------------------------cCc
Q 045291 135 PSLKYLSLSGSIL-GTNSSRILDQGLCSLVHLQELRMADNDLR------G---------------------------SLP 180 (682)
Q Consensus 135 ~~L~~L~L~~~~l-~~~~~~i~~~~l~~l~~L~~L~L~~n~l~------~---------------------------~~~ 180 (682)
.+++.|+|+++.+ +. +|+ +++++++|++|+|++|.+. + ..|
T Consensus 81 ~~V~~L~L~~~~l~g~----lp~-~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~ 155 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR----VPD-AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155 (636)
T ss_dssp CCEEEEECTTSCCEEE----ECG-GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGG
T ss_pred CCEEEEEecCcccCCc----CCh-HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCch
Confidence 5799999999999 56 775 8999999999999999652 1 001
Q ss_pred hhhc-------------------CCCCCCEEecc--CCccccccCCchhcccCCCcEEecCCCcCccc------------
Q 045291 181 WCLA-------------------NMTSLRILDVS--FNQLTGSISSSPLVHLTSIEMLILSDNHFQIP------------ 227 (682)
Q Consensus 181 ~~~~-------------------~l~~L~~L~L~--~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~------------ 227 (682)
..+. ....++.+.+. .|.+++ + |..+.++++|++|++++|.+++.
T Consensus 156 ~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~ 233 (636)
T 4eco_A 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233 (636)
T ss_dssp GGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-E-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSH
T ss_pred hhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-C-CHHHhcccCCCEEECcCCccccccccccccccccc
Confidence 1111 11122222222 567886 7 77899999999999999999874
Q ss_pred -----cCccccc--cCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCC
Q 045291 228 -----ISLEPLF--NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIK 300 (682)
Q Consensus 228 -----~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 300 (682)
+|.. ++ .+++|++|++++|.+.+ .+|..+..+++|+.|++++|+
T Consensus 234 ~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~----------------------------~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 234 YAQQYKTED-LKWDNLKDLTDVEVYNCPNLT----------------------------KLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp HHHHHTTSC-CCGGGCTTCCEEEEECCTTCS----------------------------SCCTTTTTCSSCCEEECTTCT
T ss_pred hhcccCchh-hhhcccCCCCEEEecCCcCCc----------------------------cChHHHhcCCCCCEEECcCCC
Confidence 5543 56 88999999998887653 467888999999999999998
Q ss_pred -CcC-cCchHHHhcC------CCCcEEEcCCCCCcccCCC--CCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEe
Q 045291 301 -MNG-EFPTWLLENN------AKLETLFLINDSIGGPFRL--PIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI 370 (682)
Q Consensus 301 -~~~-~~~~~~~~~~------~~L~~L~l~~~~l~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 370 (682)
+++ .+|..+ ..+ ++|++|++++|.+. ..+. .+..+++|++|++++|.+.|.+| .+. .+++|++|++
T Consensus 285 ~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L 360 (636)
T 4eco_A 285 GISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNL 360 (636)
T ss_dssp TSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEEC
T ss_pred CCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEEC
Confidence 887 788773 444 89999999999999 4455 68899999999999999998888 444 4899999999
Q ss_pred cCCcCCcCCCcccCCCCC-CCEEEccCCcCCCcCchhhhh-CCCCCCEEEccCCcCCCcccccCC-------CCCCccEE
Q 045291 371 STNALHGSIPSSFGNMKF-LQILDLSNNHLTGEIPEYLAV-GCVNLNSLALSNNNLQGHMFSRNF-------NLTNLKWL 441 (682)
Q Consensus 371 ~~n~i~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L 441 (682)
++|.++ .+|..+..+++ |++|++++|.+. .+|..+.. .+++|+.|++++|++.+..|..+. .+++|++|
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 999998 77778999999 999999999998 88875431 134899999999999998888777 78899999
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCC-------CCCeecCCCCcCcCCcchhcc--CCCCCCE
Q 045291 442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT-------RLQYIIMPNNHLEGPIPVEFC--QLDLLQI 512 (682)
Q Consensus 442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-------~L~~L~L~~n~l~~~~~~~~~--~l~~L~~ 512 (682)
++++|.+....+..+..+++|++|++++|.+....+..+.... +|++|+|++|.++ .+|..+. .+++|+.
T Consensus 439 ~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~ 517 (636)
T 4eco_A 439 NLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVG 517 (636)
T ss_dssp ECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCE
T ss_pred ECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCE
Confidence 9999999966566677899999999999999944444444333 9999999999999 5666665 9999999
Q ss_pred EEccCCcCCCCcchhhccCCCCCcEEEC------CCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcc
Q 045291 513 LDISDNNISGRLIPSTFSNLKQIESLDL------SYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNES 586 (682)
Q Consensus 513 L~Ls~n~~~~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~ 586 (682)
|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|++ +.+|..+. ++++.+
T Consensus 518 L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L 592 (636)
T 4eco_A 518 IDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVL 592 (636)
T ss_dssp EECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEE
T ss_pred EECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEE
Confidence 9999999986 7888899999999999 56888889999999999999999999999 57887544 799999
Q ss_pred cccCCCCCCC
Q 045291 587 SYEGNIFLCG 596 (682)
Q Consensus 587 ~~~~n~~~c~ 596 (682)
++++|++.|-
T Consensus 593 ~Ls~N~l~~~ 602 (636)
T 4eco_A 593 DIKDNPNISI 602 (636)
T ss_dssp ECCSCTTCEE
T ss_pred ECcCCCCccc
Confidence 9999998873
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.9e-41 Score=367.95 Aligned_cols=460 Identities=17% Similarity=0.178 Sum_probs=266.6
Q ss_pred CCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCC
Q 045291 30 FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKS 109 (682)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~ 109 (682)
+...+++|+++|+++.+ |..+. ++|++|++++|.+++..+.. |.++++
T Consensus 30 ~~~~~~l~ls~~~L~~i----p~~~~--~~L~~L~Ls~N~i~~~~~~~--------------------------~~~l~~ 77 (562)
T 3a79_B 30 NELESMVDYSNRNLTHV----PKDLP--PRTKALSLSQNSISELRMPD--------------------------ISFLSE 77 (562)
T ss_dssp ---CCEEECTTSCCCSC----CTTSC--TTCCEEECCSSCCCCCCGGG--------------------------TTTCTT
T ss_pred cCCCcEEEcCCCCCccC----CCCCC--CCcCEEECCCCCccccChhh--------------------------hccCCC
Confidence 44457777777777766 44443 67777777777665433332 445555
Q ss_pred CceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc-cCchhhcCCCC
Q 045291 110 LEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG-SLPWCLANMTS 188 (682)
Q Consensus 110 L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 188 (682)
|++|++++ +.+.+..|..+.. +++|++|++++|.+.. +|.. .+++|++|++++|.+++ ..|..|+++++
T Consensus 78 L~~L~Ls~--N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~----lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 78 LRVLRLSH--NRIRSLDFHVFLF-NQDLEYLDVSHNRLQN----ISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTK 147 (562)
T ss_dssp CCEEECCS--CCCCEECTTTTTT-CTTCCEEECTTSCCCE----ECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred ccEEECCC--CCCCcCCHHHhCC-CCCCCEEECCCCcCCc----cCcc---ccccCCEEECCCCCccccCchHhhcccCc
Confidence 55555555 2333333333333 6666666666666654 5542 56677777777777665 23466777777
Q ss_pred CCEEeccCCccccccCCchhcccCCC--cEEecCCCcC--ccccCccccccCC-CCcEEEccCCcccccccccCCCCCCc
Q 045291 189 LRILDVSFNQLTGSISSSPLVHLTSI--EMLILSDNHF--QIPISLEPLFNHS-RLKIFYADNNELNAEITQSHSLTAPN 263 (682)
Q Consensus 189 L~~L~L~~n~l~~~i~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~ 263 (682)
|++|++++|.+++ ..+..+++| ++|++++|.+ ++..+. .+..+. ..-.++++.|.+.+.
T Consensus 148 L~~L~L~~n~l~~----~~~~~l~~L~L~~L~L~~n~l~~~~~~~~-~l~~l~~~~l~l~l~~n~~~~~----------- 211 (562)
T 3a79_B 148 LTFLGLSAAKFRQ----LDLLPVAHLHLSCILLDLVSYHIKGGETE-SLQIPNTTVLHLVFHPNSLFSV----------- 211 (562)
T ss_dssp CCEEEEECSBCCT----TTTGGGTTSCEEEEEEEESSCCCCSSSCC-EEEECCEEEEEEEECSSSCCCC-----------
T ss_pred ccEEecCCCcccc----CchhhhhhceeeEEEeecccccccccCcc-cccccCcceEEEEecCccchhh-----------
Confidence 7777777777662 234444544 7777777766 433221 222222 011233444433321
Q ss_pred ccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCC-----cCcCchHHHhcCCCCcEEEcCCCCCcccCCC---CCC
Q 045291 264 FQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKM-----NGEFPTWLLENNAKLETLFLINDSIGGPFRL---PIH 335 (682)
Q Consensus 264 ~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~ 335 (682)
.....+..+++|+.+++++|.. .+.+ . .+..++.++.+++.++.+.+.... ...
T Consensus 212 ----------------~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~-~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~ 273 (562)
T 3a79_B 212 ----------------QVNMSVNALGHLQLSNIKLNDENCQRLMTFL-S-ELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273 (562)
T ss_dssp ----------------CCEEEESSEEEEEEEEEECCSTTHHHHHHHH-H-HHHSCSSCEEEEEEEEEECHHHHHHHHHHH
T ss_pred ----------------hhhhcccccceEEEecccccccccchHHHHH-H-HHhccCcceEEEecCCcCcHHHHHHHHHhh
Confidence 1122344567788888888752 1111 1 256677777777776655431100 001
Q ss_pred CCCCccEEEccCCcCCCCCChhhh----hcCCCceEEEecCCcCCcCCC-cccCC---CCCCCEEEccCCcCCCcCchhh
Q 045291 336 PHRRLRFLDVSNNNFQGHMPVEIG----DILPSLFSFNISTNALHGSIP-SSFGN---MKFLQILDLSNNHLTGEIPEYL 407 (682)
Q Consensus 336 ~~~~L~~L~l~~n~~~~~~~~~~~----~~l~~L~~L~l~~n~i~~~~~-~~~~~---l~~L~~L~l~~n~~~~~~~~~~ 407 (682)
..++|++|++++|.+.+.+|..++ ..++.|+.+++..+.+ ..| ..+.. ..+|++|++++|.+. .++ .
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~ 348 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI-HMV--C 348 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--C
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCcc-ccc--C
Confidence 123677777777777766666542 2244444444444444 122 11111 245777777777664 222 1
Q ss_pred hhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCccc--CCccccCCCCCCEEeccCCcCCCCch-hhhcCCC
Q 045291 408 AVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE--IPQSLSKCSSLEGLYLNNNSLSGKIP-RWLGNLT 484 (682)
Q Consensus 408 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~ 484 (682)
...+++|++|++++|++++..+..+..+++|++|++++|.+.+. .|..+.++++|++|++++|.+.+.+| ..+..++
T Consensus 349 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 13567777777777777776667777777777777777777653 24556777777777777777776333 3466677
Q ss_pred CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEc
Q 045291 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564 (682)
Q Consensus 485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 564 (682)
+|++|++++|++++..+..+. ++|+.|++++|+++. +|..+..+++|++|++++|+++...+..+..+++|+.|++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 777777777777655444333 577777777777763 4544457777777777777777433333667777777777
Q ss_pred cCccCcccCC
Q 045291 565 AYNNLSGEIP 574 (682)
Q Consensus 565 ~~n~l~~~~~ 574 (682)
++|++.|.|+
T Consensus 505 ~~N~~~c~c~ 514 (562)
T 3a79_B 505 HDNPWDCTCP 514 (562)
T ss_dssp CSCCBCCCHH
T ss_pred cCCCcCCCcc
Confidence 7777777665
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.4e-40 Score=364.32 Aligned_cols=466 Identities=17% Similarity=0.157 Sum_probs=304.5
Q ss_pred CCCCcEEeCCCCCcCCCCccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccC
Q 045291 4 LRKLKSFGLSGVGIRDGSKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFP 83 (682)
Q Consensus 4 l~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 83 (682)
+...++++++++++ ..+|..+. ++|++|++++|.+.++. +.++.++++|++|++++|.+++..+..+.++..
T Consensus 30 ~~~~~~l~ls~~~L---~~ip~~~~--~~L~~L~Ls~N~i~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 101 (562)
T 3a79_B 30 NELESMVDYSNRNL---THVPKDLP--PRTKALSLSQNSISELR---MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQD 101 (562)
T ss_dssp ---CCEEECTTSCC---CSCCTTSC--TTCCEEECCSSCCCCCC---GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTT
T ss_pred cCCCcEEEcCCCCC---ccCCCCCC--CCcCEEECCCCCccccC---hhhhccCCCccEEECCCCCCCcCCHHHhCCCCC
Confidence 34558999999998 44777664 89999999999999983 458999999999999999988665655555555
Q ss_pred cceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcc-cccccCC
Q 045291 84 SLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRIL-DQGLCSL 162 (682)
Q Consensus 84 L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~-~~~l~~l 162 (682)
|+++++.+|... .+|.. . +++|++|++++|.+.. ++ +..++++
T Consensus 102 L~~L~Ls~N~l~-~lp~~----~---------------------------l~~L~~L~Ls~N~l~~----l~~p~~~~~l 145 (562)
T 3a79_B 102 LEYLDVSHNRLQ-NISCC----P---------------------------MASLRHLDLSFNDFDV----LPVCKEFGNL 145 (562)
T ss_dssp CCEEECTTSCCC-EECSC----C---------------------------CTTCSEEECCSSCCSB----CCCCGGGGGC
T ss_pred CCEEECCCCcCC-ccCcc----c---------------------------cccCCEEECCCCCccc----cCchHhhccc
Confidence 555555554432 33321 3 4455555555554422 22 1244555
Q ss_pred CCCCEEEccCCCCcccCchhhcCCCCC--CEEeccCCcc--ccccCCchhcccC-CCcEEecCCCcCccccCccccccCC
Q 045291 163 VHLQELRMADNDLRGSLPWCLANMTSL--RILDVSFNQL--TGSISSSPLVHLT-SIEMLILSDNHFQIPISLEPLFNHS 237 (682)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~n~l--~~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~ 237 (682)
++|++|++++|.++.. .+..+++| ++|++++|.+ ++.. +..+..+. ..-.+++++|.+.+.++...+..++
T Consensus 146 ~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~-~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 221 (562)
T 3a79_B 146 TKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGE-TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221 (562)
T ss_dssp TTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSS-CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEE
T ss_pred CcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccC-cccccccCcceEEEEecCccchhhhhhhcccccc
Confidence 5555555555554432 22222333 5555555554 3222 33333322 1113344555544433333344455
Q ss_pred CCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHH--HhcCCC
Q 045291 238 RLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWL--LENNAK 315 (682)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~--~~~~~~ 315 (682)
+|+.+++++|....... ......+..++.++.++++++.+.+.....+ ....++
T Consensus 222 ~L~~L~l~~n~~~~~~l------------------------~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~ 277 (562)
T 3a79_B 222 HLQLSNIKLNDENCQRL------------------------MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP 277 (562)
T ss_dssp EEEEEEEECCSTTHHHH------------------------HHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSS
T ss_pred eEEEecccccccccchH------------------------HHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccc
Confidence 55555555543110000 0011223445555666665555443211111 112347
Q ss_pred CcEEEcCCCCCcccCCCCC-----CCCCCccEEEccCCcCCCCCCh-hhhhc--CCCceEEEecCCcCCcCCCcccCCCC
Q 045291 316 LETLFLINDSIGGPFRLPI-----HPHRRLRFLDVSNNNFQGHMPV-EIGDI--LPSLFSFNISTNALHGSIPSSFGNMK 387 (682)
Q Consensus 316 L~~L~l~~~~l~~~~~~~~-----~~~~~L~~L~l~~n~~~~~~~~-~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~l~ 387 (682)
|++|++++|.+.+..+..+ ..++.|+.+++..+.+ .+|. .++.. .++|++|++++|.+.... ....++
T Consensus 278 L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~ 353 (562)
T 3a79_B 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPS 353 (562)
T ss_dssp EEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCC
T ss_pred ccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCC
Confidence 7888888887775555444 5667777777777776 4553 33221 367999999999986432 226889
Q ss_pred CCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCc--ccccCCCCCCccEEECCCCcCcc-cCCccccCCCCCCE
Q 045291 388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGH--MFSRNFNLTNLKWLLLEGNRFVG-EIPQSLSKCSSLEG 464 (682)
Q Consensus 388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~ 464 (682)
+|++|++++|.+.+.++..+ ..+++|+.|++++|++++. .+..+..+++|++|++++|.+.+ ..+..+..+++|++
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~ 432 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILV 432 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCE
T ss_pred CceEEECCCCccccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCE
Confidence 99999999999986566554 4799999999999999974 35678899999999999999997 44456889999999
Q ss_pred EeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCc
Q 045291 465 LYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK 544 (682)
Q Consensus 465 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 544 (682)
|++++|.+++..|..+. ++|++|++++|+++. +|..+..+++|+.|++++|++++ ..+..+..+++|+.|++++|+
T Consensus 433 L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 433 LNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCC
Confidence 99999999876665443 799999999999995 55555599999999999999985 444459999999999999999
Q ss_pred CCCCch
Q 045291 545 LNGKMP 550 (682)
Q Consensus 545 l~~~~~ 550 (682)
+....+
T Consensus 509 ~~c~c~ 514 (562)
T 3a79_B 509 WDCTCP 514 (562)
T ss_dssp BCCCHH
T ss_pred cCCCcc
Confidence 986554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.1e-39 Score=342.68 Aligned_cols=370 Identities=19% Similarity=0.188 Sum_probs=239.2
Q ss_pred CCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEE
Q 045291 163 VHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIF 242 (682)
Q Consensus 163 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 242 (682)
++|++|++++|.+++..|..|.++++|++|++++|.+.+.+++..|..+++|++|++++|.+++..+ ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCEE
Confidence 4556666666655555555555566666666666655544444555556666666666665543222 234555555555
Q ss_pred EccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcC
Q 045291 243 YADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLI 322 (682)
Q Consensus 243 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~ 322 (682)
++++|.+.+... .+..+..+++|+.|++++|.+.+..|..++..+++|++|+++
T Consensus 109 ~L~~n~l~~~~~--------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 162 (455)
T 3v47_A 109 TLTQCNLDGAVL--------------------------SGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT 162 (455)
T ss_dssp ECTTSCCBTHHH--------------------------HSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred eCCCCCCCcccc--------------------------CcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence 555555442110 011244555666666666666655555545566666666666
Q ss_pred CCCCcccCCCCCCCC--CCccEEEccCCcCCCCCChhhh-------hcCCCceEEEecCCcCCcCCCcccCC---CCCCC
Q 045291 323 NDSIGGPFRLPIHPH--RRLRFLDVSNNNFQGHMPVEIG-------DILPSLFSFNISTNALHGSIPSSFGN---MKFLQ 390 (682)
Q Consensus 323 ~~~l~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~~~-------~~l~~L~~L~l~~n~i~~~~~~~~~~---l~~L~ 390 (682)
+|.+.+..+..+..+ .+++.|++++|.+.+..+..+. ..+++|++|++++|.+.+..+..+.. .++|+
T Consensus 163 ~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~ 242 (455)
T 3v47_A 163 FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ 242 (455)
T ss_dssp TCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEE
T ss_pred CCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcccccccee
Confidence 666655544444333 4566666666665532221110 01344555555555544433333222 14455
Q ss_pred EEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCC--CCCCccEEECCCCcCcccCCccccCCCCCCEEecc
Q 045291 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF--NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN 468 (682)
Q Consensus 391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 468 (682)
.|++++|...+... ..+.+.......+. ..++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 243 ~L~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 307 (455)
T 3v47_A 243 SLILSNSYNMGSSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307 (455)
T ss_dssp EEECTTCTTTSCCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECT
T ss_pred eEeecccccccccc---------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECC
Confidence 55555544332100 01111111111222 24689999999999998888889999999999999
Q ss_pred CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548 (682)
Q Consensus 469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 548 (682)
+|.+.+..|..+.++++|++|++++|.+++..+..|..+++|++|++++|++++ ..|..|..+++|++|++++|++++.
T Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~ 386 (455)
T 3v47_A 308 QNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSV 386 (455)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccc-cChhhccccccccEEECCCCccccC
Confidence 999998888889999999999999999998888999999999999999999986 6688999999999999999999987
Q ss_pred chhhhhcCCCCCEEEccCccCcccCCc
Q 045291 549 MPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 549 ~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
.+..+..+++|+.|++++|+++|.+|.
T Consensus 387 ~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 387 PDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CHhHhccCCcccEEEccCCCcccCCCc
Confidence 777888999999999999999999985
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-37 Score=332.92 Aligned_cols=387 Identities=18% Similarity=0.224 Sum_probs=290.7
Q ss_pred CCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEc
Q 045291 165 LQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYA 244 (682)
Q Consensus 165 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 244 (682)
-+.++.+++.++ .+|. + .++|++|++++|.++ .+.+..+..+++|++|++++|.+.+.++...+..+++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 346777777777 5555 2 378999999999998 4547889999999999999999876666666888888888888
Q ss_pred cCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCch-HHHhcCCCCcEEEcCC
Q 045291 245 DNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPT-WLLENNAKLETLFLIN 323 (682)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-~~~~~~~~L~~L~l~~ 323 (682)
++|.+... .|..+..+++|+.|++++|.+.+..+. ..+..+++|++|++++
T Consensus 87 s~n~l~~~----------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~ 138 (455)
T 3v47_A 87 DYNQFLQL----------------------------ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138 (455)
T ss_dssp TTCTTCEE----------------------------CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS
T ss_pred CCCccCcc----------------------------ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC
Confidence 88877532 355667778888888888888754332 2355677777777777
Q ss_pred CCCcccCCCC-CCCCCCccEEEccCCcCCCCCChhhhh-cCCCceEEEecCCcCCcCCCcc--------cCCCCCCCEEE
Q 045291 324 DSIGGPFRLP-IHPHRRLRFLDVSNNNFQGHMPVEIGD-ILPSLFSFNISTNALHGSIPSS--------FGNMKFLQILD 393 (682)
Q Consensus 324 ~~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~ 393 (682)
|.+.+..+.. +..+++|++|++++|.+.+..+..+.. ..++|+.|++++|.+.+..+.. +..+++|++|+
T Consensus 139 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 218 (455)
T 3v47_A 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218 (455)
T ss_dssp SBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEE
T ss_pred CccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEe
Confidence 7777665544 566777777777777776555544433 1256777777777766544322 22456677777
Q ss_pred ccCCcCCCcCchhhhhC--CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCcccc--CCCCCCEEeccC
Q 045291 394 LSNNHLTGEIPEYLAVG--CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS--KCSSLEGLYLNN 469 (682)
Q Consensus 394 l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~ 469 (682)
+++|.+.+..+..+... .++|+.|++++|...+.... .+.+....+..+. ..++|++|++++
T Consensus 219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECCS
T ss_pred cCCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEecC
Confidence 77777665555444321 25666666666655432111 1111111222222 247899999999
Q ss_pred CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc
Q 045291 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM 549 (682)
Q Consensus 470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 549 (682)
|.+.+..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ ..+..|..+++|++|++++|++++..
T Consensus 285 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred ccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccC
Confidence 99998899999999999999999999999889999999999999999999986 67889999999999999999999888
Q ss_pred hhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCC
Q 045291 550 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL 599 (682)
Q Consensus 550 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 599 (682)
|..+..+++|++|++++|+++...+..+..+++++.+++.+|++.|+|+.
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 99999999999999999999976666678899999999999999999973
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.3e-36 Score=316.57 Aligned_cols=417 Identities=25% Similarity=0.257 Sum_probs=231.6
Q ss_pred CCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCC
Q 045291 57 FTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPS 136 (682)
Q Consensus 57 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 136 (682)
.++|++|++++|.+ +.+|..++++..|+++++.+|...+.+|.. ++++++|+.+++..|. ..+
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~--~~~l~~L~~l~l~~c~--------------~~~ 72 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPG--NGEQREMAVSRLRDCL--------------DRQ 72 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTT--SCCCHHHHHHHHHHHH--------------HHT
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcc--cccchhcchhhhhhhh--------------ccC
Confidence 35555555555555 455555555555666665555555556654 7777777777666521 247
Q ss_pred CcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcE
Q 045291 137 LKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEM 216 (682)
Q Consensus 137 L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~ 216 (682)
+++|++++|.+.. +|. -.++|++|++++|.+++ +|.. +++|++|++++|.++ .+ +.. .++|++
T Consensus 73 l~~L~l~~~~l~~----lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l-~~~---~~~L~~ 135 (454)
T 1jl5_A 73 AHELELNNLGLSS----LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-AL-SDL---PPLLEY 135 (454)
T ss_dssp CSEEECTTSCCSC----CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CC-CSC---CTTCCE
T ss_pred CCEEEecCCcccc----CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cc-cCC---CCCCCE
Confidence 8889999888855 554 13689999999998885 5543 478899999999887 44 221 268899
Q ss_pred EecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEc
Q 045291 217 LILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDL 296 (682)
Q Consensus 217 L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l 296 (682)
|++++|.+++ ++ .+..+++|++|++++|.+.+ +|.. ..+|+.|++
T Consensus 136 L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~-----------------------------lp~~---~~~L~~L~L 180 (454)
T 1jl5_A 136 LGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKK-----------------------------LPDL---PPSLEFIAA 180 (454)
T ss_dssp EECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSC-----------------------------CCCC---CTTCCEEEC
T ss_pred EECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCcc-----------------------------cCCC---cccccEEEC
Confidence 9999998874 44 37788888888888887653 1211 137888888
Q ss_pred CCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCC
Q 045291 297 SHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALH 376 (682)
Q Consensus 297 s~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~ 376 (682)
++|.+.+ +|+ +..+++|++|++++|.+.+.... .++|++|++++|.+. .+|. + ..+++|++|++++|.++
T Consensus 181 ~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~-~lp~-~-~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 181 GNNQLEE-LPE--LQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE-ELPE-L-QNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CSSCCSS-CCC--CTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCS-SCCC-C-TTCTTCCEEECCSSCCS
T ss_pred cCCcCCc-Ccc--ccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCC-cccc-c-CCCCCCCEEECCCCcCC
Confidence 8888875 553 57788888888888877764321 247788888888776 5663 3 34778888888888777
Q ss_pred cCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccc
Q 045291 377 GSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSL 456 (682)
Q Consensus 377 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 456 (682)
+. |. .+++|++|++++|++. .+|. ..++|+.|++++|++++... ..++|++|++++|.+.+. +
T Consensus 251 ~l-~~---~~~~L~~L~l~~N~l~-~l~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~--- 313 (454)
T 1jl5_A 251 TL-PD---LPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C--- 313 (454)
T ss_dssp SC-CS---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C---
T ss_pred cc-cc---cccccCEEECCCCccc-ccCc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c---
Confidence 43 32 2367788888888776 4553 24677788888777765321 125777777777777642 1
Q ss_pred cCC-CCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC-cchhhccCCCC
Q 045291 457 SKC-SSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR-LIPSTFSNLKQ 534 (682)
Q Consensus 457 ~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~ 534 (682)
.+ ++|++|++++|.+.+ +|.. +++|++|++++|.+++. |. .+++|+.|++++|++++. .+|..+
T Consensus 314 -~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l----- 379 (454)
T 1jl5_A 314 -DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESV----- 379 (454)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTC-----
T ss_pred -CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHH-----
Confidence 22 477777777777764 4432 46777777777777743 33 356777777777777641 122222
Q ss_pred CcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc--cCCcccccccccCcccccCCCCCC
Q 045291 535 IESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG--EIPEWTAQFATFNESSYEGNIFLC 595 (682)
Q Consensus 535 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~~~~~n~~~c 595 (682)
..| +.|...+.+|.. +++|+.|++++|++++ .+|.+ ++.+.+.++...|
T Consensus 380 -~~L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~ 430 (454)
T 1jl5_A 380 -EDL--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVD 430 (454)
T ss_dssp -CEE--ECCC-----------------------------------------------------
T ss_pred -Hhh--hhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCC
Confidence 222 234444445442 3788999999999987 56653 3444455554444
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.5e-36 Score=315.91 Aligned_cols=426 Identities=20% Similarity=0.200 Sum_probs=191.1
Q ss_pred CCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCCCCcchhHHHhhccCcceeeccCccccCcccCCCCCCCCCC
Q 045291 30 FPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSISYCEVNGVLRGQGFPSFKS 109 (682)
Q Consensus 30 l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~l~~ 109 (682)
..+|++|++++|.+..+ |.+++++++|++|++++|.+.+..|..++++..+..+.+..|.. .+
T Consensus 10 ~~~L~~L~l~~n~l~~i----P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-------------~~ 72 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEM----PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-------------RQ 72 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-------------HT
T ss_pred cccchhhhcccCchhhC----ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-------------cC
Confidence 35555555555555444 44555555555555555555555555554444433322222211 23
Q ss_pred CceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCC
Q 045291 110 LEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSL 189 (682)
Q Consensus 110 L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 189 (682)
+++|++++|. +. .+|.. .++|++|++++|.+.. +|. .+++|++|++++|.+++ ++.. .++|
T Consensus 73 l~~L~l~~~~--l~-~lp~~----~~~L~~L~l~~n~l~~----lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L 133 (454)
T 1jl5_A 73 AHELELNNLG--LS-SLPEL----PPHLESLVASCNSLTE----LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLL 133 (454)
T ss_dssp CSEEECTTSC--CS-CCCSC----CTTCSEEECCSSCCSS----CCC----CCTTCCEEECCSSCCSC-CCSC---CTTC
T ss_pred CCEEEecCCc--cc-cCCCC----cCCCCEEEccCCcCCc----ccc----ccCCCcEEECCCCccCc-ccCC---CCCC
Confidence 4444444422 11 11110 2345555555554433 332 12445555555554442 1111 1345
Q ss_pred CEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccce
Q 045291 190 RILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRL 269 (682)
Q Consensus 190 ~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l 269 (682)
++|++++|.++ .+ + .+..+++|++|++++|.+++ ++. ...+|+.|++++|.+.+
T Consensus 134 ~~L~L~~n~l~-~l-p-~~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~------------------ 187 (454)
T 1jl5_A 134 EYLGVSNNQLE-KL-P-ELQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEE------------------ 187 (454)
T ss_dssp CEEECCSSCCS-SC-C-CCTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSS------------------
T ss_pred CEEECcCCCCC-CC-c-ccCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCc------------------
Confidence 55555555554 23 2 24555555555555555442 111 12345555555554431
Q ss_pred eccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCc
Q 045291 270 LLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNN 349 (682)
Q Consensus 270 ~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 349 (682)
+| .+..+++|+.|++++|.+.+ +|.. .++|++|++++|.+..+. .+..+++|++|++++|.
T Consensus 188 -----------l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 188 -----------LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNL 248 (454)
T ss_dssp -----------CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC
T ss_pred -----------Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCc
Confidence 12 23455556666666665553 3321 246666666666666432 36667777777777777
Q ss_pred CCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc
Q 045291 350 FQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF 429 (682)
Q Consensus 350 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 429 (682)
+. .+|. .+++|+.|++++|.+.+ +|.. +++|++|++++|++. .++. ..++|+.|++++|++++...
T Consensus 249 l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~-~l~~----~~~~L~~L~l~~N~l~~i~~ 314 (454)
T 1jl5_A 249 LK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS-GLSE----LPPNLYYLNASSNEIRSLCD 314 (454)
T ss_dssp CS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-EESC----CCTTCCEEECCSSCCSEECC
T ss_pred CC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC-cccC----cCCcCCEEECcCCcCCcccC
Confidence 76 3443 24677888888877775 3322 367888888888776 3332 13578888888888775321
Q ss_pred ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcC--CcchhccCC
Q 045291 430 SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG--PIPVEFCQL 507 (682)
Q Consensus 430 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l 507 (682)
..++|++|++++|.+.+ +|.. +++|++|++++|.++ .+|. .+++|++|++++|++++ ..|..+
T Consensus 315 ----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l--- 379 (454)
T 1jl5_A 315 ----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESV--- 379 (454)
T ss_dssp ----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTC---
T ss_pred ----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHH---
Confidence 12578888888888875 4433 578889999999888 4554 47889999999999887 445433
Q ss_pred CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC--CchhhhhcCCCCCEEEccCccCcccCCcccccc
Q 045291 508 DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG--KMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 580 (682)
Q Consensus 508 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 580 (682)
..| +.|.+.+ .+|. .+++|+.|++++|++++ .+|. +++.|++.+|.+.+..+.+...+
T Consensus 380 ---~~L--~~n~~~~-~i~~---~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~~ 439 (454)
T 1jl5_A 380 ---EDL--RMNSHLA-EVPE---LPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHETT 439 (454)
T ss_dssp ---CEE--ECCC---------------------------------------------------------------
T ss_pred ---Hhh--hhccccc-cccc---ccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHHh
Confidence 333 3455554 3444 35789999999999986 4443 46777889999888777655544
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-35 Score=314.04 Aligned_cols=310 Identities=19% Similarity=0.127 Sum_probs=256.2
Q ss_pred ccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCC
Q 045291 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILP 363 (682)
Q Consensus 284 ~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 363 (682)
.+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+..+....|..+++|++|++++|.+.+..+..+. .++
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~ 128 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGA-FNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ-DLY 128 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT-TCT
T ss_pred HccCCCCCCEEECCCCccCEeChhh-hhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc-ccc
Confidence 3445566666666666666544544 56777777777777777776666777888899999999988755555554 488
Q ss_pred CceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEEC
Q 045291 364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL 443 (682)
Q Consensus 364 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 443 (682)
+|+.|++++|.+.+..+..|.++++|++|++++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 9999999999998888888999999999999999998 677777778999999999999999888888999999999999
Q ss_pred CCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC
Q 045291 444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 523 (682)
Q Consensus 444 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 523 (682)
++|...+..+.......+|++|++++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus 208 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~- 286 (477)
T 2id5_A 208 SHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV- 286 (477)
T ss_dssp ECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-
T ss_pred CCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccce-
Confidence 9998877777666667799999999999997776789999999999999999998888889999999999999999986
Q ss_pred cchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 524 LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 524 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
..+..|.++++|+.|++++|++++..+..|..+++|+.|++++|++.|.++. ...+.......+.++...|..|
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL-LWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG-HHHHTTTTSSCCTTCCCBEEES
T ss_pred ECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch-HhHHhhhhccccCccCceeCCc
Confidence 6788999999999999999999988888889999999999999999987763 1112233345566777777654
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.6e-34 Score=305.72 Aligned_cols=345 Identities=26% Similarity=0.335 Sum_probs=238.5
Q ss_pred CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291 134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS 213 (682)
Q Consensus 134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 213 (682)
+++++.|++.++.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++ .+++ +..+++
T Consensus 45 l~~l~~L~l~~~~i~~----l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS----ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTT
T ss_pred hccccEEecCCCCCcc----Cc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCC
Confidence 4566666666666644 44 25566677777777776664433 666667777777777666 3312 666666
Q ss_pred CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCE
Q 045291 214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF 293 (682)
Q Consensus 214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~ 293 (682)
|++|++++|.+++.. .+..+++|++|++++|.+... + .+..+++|+.
T Consensus 114 L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~-----------------------------~-~~~~l~~L~~ 160 (466)
T 1o6v_A 114 LTGLTLFNNQITDID---PLKNLTNLNRLELSSNTISDI-----------------------------S-ALSGLTSLQQ 160 (466)
T ss_dssp CCEEECCSSCCCCCG---GGTTCTTCSEEEEEEEEECCC-----------------------------G-GGTTCTTCSE
T ss_pred CCEEECCCCCCCCCh---HHcCCCCCCEEECCCCccCCC-----------------------------h-hhccCCcccE
Confidence 666666666665321 144555555555555443310 0 1233444444
Q ss_pred EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291 294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN 373 (682)
Q Consensus 294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 373 (682)
|+++ +.+ ... ..+..+++|++|++++|.+.+ ++. + ..+++|+.|++++|
T Consensus 161 L~l~-~~~-------------------------~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l-~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 161 LSFG-NQV-------------------------TDL--KPLANLTTLERLDISSNKVSD-ISV-L-AKLTNLESLIATNN 209 (466)
T ss_dssp EEEE-ESC-------------------------CCC--GGGTTCTTCCEEECCSSCCCC-CGG-G-GGCTTCSEEECCSS
T ss_pred eecC-Ccc-------------------------cCc--hhhccCCCCCEEECcCCcCCC-Chh-h-ccCCCCCEEEecCC
Confidence 4443 122 221 124455666666666666652 222 2 33777888888887
Q ss_pred cCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC
Q 045291 374 ALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453 (682)
Q Consensus 374 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 453 (682)
.+.+..+ +..+++|++|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+
T Consensus 210 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 210 QISDITP--LGILTNLDELSLNGNQLK-DIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG
T ss_pred ccccccc--ccccCCCCEEECCCCCcc-cchh--hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc
Confidence 7775544 566778888888888776 4432 3468888888888888876654 6778889999999998886544
Q ss_pred ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK 533 (682)
Q Consensus 454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~ 533 (682)
+..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++ . ..+..++
T Consensus 283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~l~~l~ 353 (466)
T 1o6v_A 283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--V-SSLANLT 353 (466)
T ss_dssp --GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC--C-GGGTTCT
T ss_pred --ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCC--c-hhhccCC
Confidence 7888999999999999986544 7889999999999999997766 7789999999999999986 3 4688999
Q ss_pred CCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291 534 QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571 (682)
Q Consensus 534 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 571 (682)
+|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999998777 7889999999999999986
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-33 Score=299.94 Aligned_cols=345 Identities=26% Similarity=0.341 Sum_probs=212.0
Q ss_pred CCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcC
Q 045291 106 SFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLAN 185 (682)
Q Consensus 106 ~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 185 (682)
.++++++|+++++.. . .++. +.. +++|++|++++|.+.. +++ +.++++|++|++++|.+.+..+ +..
T Consensus 44 ~l~~l~~L~l~~~~i--~-~l~~-~~~-l~~L~~L~Ls~n~l~~----~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 110 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI--K-SIDG-VEY-LNNLTQINFSNNQLTD----ITP--LKNLTKLVDILMNNNQIADITP--LAN 110 (466)
T ss_dssp HHHTCCEEECCSSCC--C-CCTT-GGG-CTTCCEEECCSSCCCC----CGG--GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred HhccccEEecCCCCC--c-cCcc-hhh-hcCCCEEECCCCccCC----chh--hhccccCCEEECCCCccccChh--hcC
Confidence 356788888887433 2 2332 444 8889999999888865 554 8888899999999988885544 888
Q ss_pred CCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCccc
Q 045291 186 MTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQ 265 (682)
Q Consensus 186 l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 265 (682)
+++|++|++++|.++ .+ ..+..+++|++|++++|.+++. ..+..+++|+.+++++ .+..
T Consensus 111 l~~L~~L~L~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~-~~~~-------------- 169 (466)
T 1o6v_A 111 LTNLTGLTLFNNQIT-DI--DPLKNLTNLNRLELSSNTISDI---SALSGLTSLQQLSFGN-QVTD-------------- 169 (466)
T ss_dssp CTTCCEEECCSSCCC-CC--GGGTTCTTCSEEEEEEEEECCC---GGGTTCTTCSEEEEEE-SCCC--------------
T ss_pred CCCCCEEECCCCCCC-CC--hHHcCCCCCCEEECCCCccCCC---hhhccCCcccEeecCC-cccC--------------
Confidence 899999999999887 44 2378888999999999887742 2477888888888853 2211
Q ss_pred ccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEc
Q 045291 266 LNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDV 345 (682)
Q Consensus 266 l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 345 (682)
. ..+..+++|+.|++++|.+.+. +. +..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 170 ---------------~-~~~~~l~~L~~L~l~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 228 (466)
T 1o6v_A 170 ---------------L-KPLANLTTLERLDISSNKVSDI-SV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSL 228 (466)
T ss_dssp ---------------C-GGGTTCTTCCEEECCSSCCCCC-GG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEEC
T ss_pred ---------------c-hhhccCCCCCEEECcCCcCCCC-hh--hccCCCCCEEEecCCccccccc--ccccCCCCEEEC
Confidence 1 1256778888888888887643 22 5566777777777776665433 444566666666
Q ss_pred cCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC
Q 045291 346 SNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ 425 (682)
Q Consensus 346 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 425 (682)
++|.+.+ ++ .+ ..+++|+.|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|+.|++++|++.
T Consensus 229 ~~n~l~~-~~-~l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 229 NGNQLKD-IG-TL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp CSSCCCC-CG-GG-GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCS
T ss_pred CCCCccc-ch-hh-hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCccc
Confidence 6666652 22 22 235666666666666654433 555566666666666555 3332 234555555555555555
Q ss_pred CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhcc
Q 045291 426 GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFC 505 (682)
Q Consensus 426 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 505 (682)
+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++++..| +.
T Consensus 301 ~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 372 (466)
T 1o6v_A 301 DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LA 372 (466)
T ss_dssp CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hh
Confidence 4332 3445555555555555544333 44455555555555555433 234445555555555555554443 44
Q ss_pred CCCCCCEEEccCCcCC
Q 045291 506 QLDLLQILDISDNNIS 521 (682)
Q Consensus 506 ~l~~L~~L~Ls~n~~~ 521 (682)
.+++|+.|++++|+++
T Consensus 373 ~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 373 NLTRITQLGLNDQAWT 388 (466)
T ss_dssp TCTTCCEEECCCEEEE
T ss_pred cCCCCCEEeccCCccc
Confidence 4555555555555544
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=311.03 Aligned_cols=307 Identities=19% Similarity=0.161 Sum_probs=279.3
Q ss_pred CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE
Q 045291 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF 368 (682)
Q Consensus 289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 368 (682)
++++.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .+|...+..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDE-FASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhH-ccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 57999999999998665555 789999999999999999998899999999999999999998 6666655569999999
Q ss_pred EecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291 369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448 (682)
Q Consensus 369 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 448 (682)
++++|.+.+..+..|..+++|++|++++|.+. .++...+.++++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence 99999999888999999999999999999998 55555566899999999999999988888889999999999999999
Q ss_pred cccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh
Q 045291 449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST 528 (682)
Q Consensus 449 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 528 (682)
.+..+..|..+++|++|++++|+..+.++.......+|++|++++|.+++..+..|..+++|+.|+|++|++++ ..+..
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~ 267 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIST-IEGSM 267 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCE-ECTTS
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCc-cChhh
Confidence 98888899999999999999999887777777777799999999999998777889999999999999999986 66788
Q ss_pred ccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCC
Q 045291 529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL 599 (682)
Q Consensus 529 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 599 (682)
|..+++|++|++++|++.+..|..+..+++|+.|++++|.++...+..+..+.+++.+++.+||+.|+|+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 99999999999999999998899999999999999999999977776678889999999999999999864
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-33 Score=294.31 Aligned_cols=266 Identities=20% Similarity=0.243 Sum_probs=178.7
Q ss_pred ccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCc
Q 045291 286 YHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365 (682)
Q Consensus 286 ~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 365 (682)
..+++|+.|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ++. ..+++|
T Consensus 114 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~---~~l~~L 188 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSL 188 (390)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CCG---GGCTTC
T ss_pred cCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-ccc---cccccc
Confidence 34445555555555554 3444334566667777777666666555556666666666666666552 221 124455
Q ss_pred eEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCC
Q 045291 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG 445 (682)
Q Consensus 366 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 445 (682)
+.|++++|.+.+ ++ ..++|++|++++|.+...... ..++|+.|++++
T Consensus 189 ~~L~l~~n~l~~-------------------------~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~ 235 (390)
T 3o6n_A 189 FHANVSYNLLST-------------------------LA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQH 235 (390)
T ss_dssp SEEECCSSCCSE-------------------------EE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCS
T ss_pred ceeecccccccc-------------------------cC-----CCCcceEEECCCCeeeecccc---ccccccEEECCC
Confidence 555555554432 11 123455555555555433221 235677777777
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc
Q 045291 446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI 525 (682)
Q Consensus 446 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~ 525 (682)
|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++ .+..+..+++|+.|++++|++++ +
T Consensus 236 n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~--~ 310 (390)
T 3o6n_A 236 NNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--V 310 (390)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC--C
T ss_pred CCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee--c
Confidence 777643 466777888888888888887777888888888888888888875 34556778999999999999985 6
Q ss_pred hhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCCC
Q 045291 526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLPL 599 (682)
Q Consensus 526 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~~ 599 (682)
|..+..+++|+.|++++|+++... +..+++|+.|++++|++.|.+.. ..+..+....+.+++..|.++.
T Consensus 311 ~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 311 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTTC
T ss_pred CccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccchhHH--HHHHHHHhhcccccCceecccc
Confidence 667788899999999999998653 66788999999999999986543 4456667777888888887643
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.6e-33 Score=293.15 Aligned_cols=355 Identities=18% Similarity=0.201 Sum_probs=222.7
Q ss_pred CCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhh
Q 045291 104 FPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCL 183 (682)
Q Consensus 104 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 183 (682)
++++++|++|++++|. +.+ +| .+.. +++|++|++++|.+.. ++ ++.+++|++|++++|.+++. + +
T Consensus 38 ~~~l~~L~~L~Ls~n~--l~~-~~-~l~~-l~~L~~L~Ls~n~l~~----~~---~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS--ITD-MT-GIEK-LTGLTKLICTSNNITT----LD---LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp HHHHTTCCEEECCSSC--CCC-CT-TGGG-CTTCSEEECCSSCCSC----CC---CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred hhHcCCCCEEEccCCC--ccc-Ch-hhcc-cCCCCEEEccCCcCCe----Ec---cccCCCCCEEECcCCCCcee-e--c
Confidence 5567777777777743 332 33 3444 7777777777777644 32 66677777777777777653 2 6
Q ss_pred cCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCc
Q 045291 184 ANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263 (682)
Q Consensus 184 ~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 263 (682)
+.+++|++|++++|.+++ + + +..+++|++|++++|.+++ ++ +..+++|+.+++++|...+.
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~----------- 163 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-L-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITK----------- 163 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-C-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCC-----------
T ss_pred CCCCcCCEEECCCCcCCe-e-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccc-----------
Confidence 677777777777777763 4 2 6677777777777777764 22 55666777777766643211
Q ss_pred ccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEE
Q 045291 264 FQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFL 343 (682)
Q Consensus 264 ~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 343 (682)
+ .+..+++|+.|++++|.+++ +| +..+++|+.|++++|.+.+. .+..+++|+.|
T Consensus 164 -----------------~--~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L 217 (457)
T 3bz5_A 164 -----------------L--DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFL 217 (457)
T ss_dssp -----------------C--CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEE
T ss_pred -----------------c--ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEE
Confidence 1 13455667777777776664 33 44566666666666666654 35556666666
Q ss_pred EccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCc
Q 045291 344 DVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN 423 (682)
Q Consensus 344 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~ 423 (682)
++++|.+++ +| + ..+++|+.|++++|.+++.. +..+++|+.|++++| +|+.|++++|.
T Consensus 218 ~Ls~N~l~~-ip--~-~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n---------------~L~~L~l~~n~ 275 (457)
T 3bz5_A 218 DCSSNKLTE-ID--V-TPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT---------------DLLEIDLTHNT 275 (457)
T ss_dssp ECCSSCCSC-CC--C-TTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC---------------CCSCCCCTTCT
T ss_pred ECcCCcccc-cC--c-cccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC---------------CCCEEECCCCc
Confidence 666666653 44 2 23566666666666666542 234555666655443 34445556665
Q ss_pred CCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchh
Q 045291 424 LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVE 503 (682)
Q Consensus 424 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 503 (682)
+.+..+ +..+++|+.|++++|...+.+|. ..++|+.|++++| ++|++|++++|++++. .
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~ 334 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---D 334 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---C
T ss_pred cCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---c
Confidence 554444 34566777777777765555443 2344555544443 5778888888888764 2
Q ss_pred ccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 504 FCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 504 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
+..+++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|+.+++++|.++|.+|.
T Consensus 335 l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccCCcCcEEECCCCCCCC---------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 6777888888888888764 24566677777777754 2445677788999999888886
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-32 Score=303.27 Aligned_cols=265 Identities=20% Similarity=0.241 Sum_probs=178.5
Q ss_pred ccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCc
Q 045291 286 YHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSL 365 (682)
Q Consensus 286 ~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L 365 (682)
..+++|+.|++++|.+. .+|..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ++. ..+++|
T Consensus 120 ~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---~~l~~L 194 (597)
T 3oja_B 120 QNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSL 194 (597)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCG---GGCTTC
T ss_pred cCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cCh---hhhhhh
Confidence 34445555555555554 3333334556666666666666666555556666666666666665553 221 114455
Q ss_pred eEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCC
Q 045291 366 FSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG 445 (682)
Q Consensus 366 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 445 (682)
+.|++++|.+.+. .. .++|+.|++++|.+....... .++|+.|++++
T Consensus 195 ~~L~l~~n~l~~l-----~~-------------------------~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~ 241 (597)
T 3oja_B 195 FHANVSYNLLSTL-----AI-------------------------PIAVEELDASHNSINVVRGPV---NVELTILKLQH 241 (597)
T ss_dssp SEEECCSSCCSEE-----EC-------------------------CTTCSEEECCSSCCCEEECSC---CSCCCEEECCS
T ss_pred hhhhcccCccccc-----cC-------------------------CchhheeeccCCccccccccc---CCCCCEEECCC
Confidence 5555555444321 12 334555555555554332221 25677777777
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc
Q 045291 446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI 525 (682)
Q Consensus 446 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~ 525 (682)
|.+.+ +..+..+++|++|++++|.+.+..|..|..+++|++|+|++|.+++ +|..+..+++|+.|+|++|++++ +
T Consensus 242 n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~--i 316 (597)
T 3oja_B 242 NNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--V 316 (597)
T ss_dssp SCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC--C
T ss_pred CCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc--c
Confidence 77764 3567778888888888888887778888888888888888888885 45566778999999999999985 6
Q ss_pred hhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 526 PSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 526 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
|..+..+++|+.|++++|++.+.. +..+++|+.|++++|++.|.+.. ..+..+....+.+++..|+.+
T Consensus 317 ~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp GGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred CcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 777888999999999999998653 56788999999999999987543 445666667778888888763
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.8e-32 Score=284.94 Aligned_cols=351 Identities=19% Similarity=0.203 Sum_probs=251.5
Q ss_pred HHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchh
Q 045291 129 IIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPL 208 (682)
Q Consensus 129 ~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~ 208 (682)
.+.. +++|++|++++|.+.. +| +++.+++|++|++++|.+++. | ++.+++|++|++++|.+++ + + +
T Consensus 37 ~~~~-l~~L~~L~Ls~n~l~~----~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~-~--~ 102 (457)
T 3bz5_A 37 SEEQ-LATLTSLDCHNSSITD----MT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-L-D--V 102 (457)
T ss_dssp EHHH-HTTCCEEECCSSCCCC----CT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-C-C--C
T ss_pred ChhH-cCCCCEEEccCCCccc----Ch--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-e-e--c
Confidence 3444 7888888888888865 54 578888888888888888854 3 7788888888888888873 4 2 7
Q ss_pred cccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccC
Q 045291 209 VHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQ 288 (682)
Q Consensus 209 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~ 288 (682)
..+++|++|++++|.+++ ++ +..+++|+.|++++|.+.+. + +..+
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-----------------------------~--l~~l 147 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI-----------------------------D--VSHN 147 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC-----------------------------C--CTTC
T ss_pred CCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCcccee-----------------------------c--cccC
Confidence 788888888888888874 32 66778888888888876531 1 4456
Q ss_pred CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE
Q 045291 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF 368 (682)
Q Consensus 289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 368 (682)
++|+.|++++|...+.++ +..+++|++|++++|.+++.. +..+++|+.|++++|.+++. + + ..+++|+.|
T Consensus 148 ~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~-~--l-~~l~~L~~L 217 (457)
T 3bz5_A 148 TQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKL-D--L-NQNIQLTFL 217 (457)
T ss_dssp TTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCC-C--C-TTCTTCSEE
T ss_pred CcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCee-c--c-ccCCCCCEE
Confidence 678888888875544443 456777777777777777642 56667777777777777642 2 2 236777777
Q ss_pred EecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291 369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448 (682)
Q Consensus 369 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 448 (682)
++++|.+++ +| +..+++|++|++++|++.+ ++ ...+++|+.|+++.| +|+.|++++|..
T Consensus 218 ~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~ 276 (457)
T 3bz5_A 218 DCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQ 276 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTT
T ss_pred ECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC---HHHCCCCCEEeccCC--------------CCCEEECCCCcc
Confidence 777777775 33 6667777777777777763 33 124666777766554 456677777776
Q ss_pred cccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh
Q 045291 449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST 528 (682)
Q Consensus 449 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 528 (682)
.+.+| +..+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++++ . +
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l-~-- 334 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTE-L-D-- 334 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC-C-C--
T ss_pred CCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCcccc-c-c--
Confidence 65555 46678888888888887766663 3456666665554 689999999999987 3 2
Q ss_pred ccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCC
Q 045291 529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFL 594 (682)
Q Consensus 529 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~ 594 (682)
++.+++|+.|++++|++++ ++.|..|++++|.+.+. ..+..+..+++..|.+.
T Consensus 335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLT 387 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEE
T ss_pred cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEE
Confidence 8899999999999999985 35677778999999875 34456666777777654
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7e-33 Score=278.80 Aligned_cols=259 Identities=33% Similarity=0.553 Sum_probs=236.8
Q ss_pred CCccEEEccCCcCCC--CCChhhhhcCCCceEEEecC-CcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCC
Q 045291 338 RRLRFLDVSNNNFQG--HMPVEIGDILPSLFSFNIST-NALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNL 414 (682)
Q Consensus 338 ~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L 414 (682)
.+++.|++++|.+.+ .+|..+.. +++|++|++++ |.+.+..|..|..+++|++|++++|.+.+.+|..+. .+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCC
Confidence 478899999999987 78887766 89999999995 889888999999999999999999999877777654 79999
Q ss_pred CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCC-CCCEEeccCCcCCCCchhhhcCCCCCCeecCCC
Q 045291 415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCS-SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493 (682)
Q Consensus 415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 493 (682)
++|++++|++.+..+..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..|..+..++ |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999999988888899999999999999999988999999998 999999999999989999999987 99999999
Q ss_pred CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccC
Q 045291 494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI 573 (682)
Q Consensus 494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 573 (682)
|.+++..+..|..+++|+.|++++|++++ ..+ .+..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAF-DLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECC-BGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceee-ecC-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence 99999999999999999999999999986 344 4889999999999999999999999999999999999999999999
Q ss_pred CcccccccccCcccccCCCCCCCCCCCCC
Q 045291 574 PEWTAQFATFNESSYEGNIFLCGLPLPIC 602 (682)
Q Consensus 574 ~~~~~~~~~l~~~~~~~n~~~c~~~~~~~ 602 (682)
|.. ..+++++.+++.+|++.|+.|...|
T Consensus 285 p~~-~~l~~L~~l~l~~N~~lc~~p~~~C 312 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKCLCGSPLPAC 312 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred CCC-ccccccChHHhcCCCCccCCCCCCC
Confidence 994 8899999999999999999877654
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.9e-32 Score=284.28 Aligned_cols=310 Identities=19% Similarity=0.245 Sum_probs=183.2
Q ss_pred CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291 134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS 213 (682)
Q Consensus 134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 213 (682)
++++++|+++++.+.. +|...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+++..+..+++
T Consensus 44 l~~l~~l~l~~~~l~~----l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRK----LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESE----ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhh----CChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCC
Confidence 4566666666665544 55544556666666666666666555556666666666666666665 333455566666
Q ss_pred CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCE
Q 045291 214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF 293 (682)
Q Consensus 214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~ 293 (682)
|++|++++|.++ .++.. .+..+++|+.
T Consensus 119 L~~L~L~~n~l~-~l~~~----------------------------------------------------~~~~l~~L~~ 145 (390)
T 3o6n_A 119 LTVLVLERNDLS-SLPRG----------------------------------------------------IFHNTPKLTT 145 (390)
T ss_dssp CCEEECCSSCCC-CCCTT----------------------------------------------------TTTTCTTCCE
T ss_pred CCEEECCCCccC-cCCHH----------------------------------------------------HhcCCCCCcE
Confidence 666666666554 12211 1234455666
Q ss_pred EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291 294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN 373 (682)
Q Consensus 294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 373 (682)
|++++|.+.+..+.. +..+++|++|++++|.+... .+..+++|+.|++++|.+.+ ++ ..++|++|++++|
T Consensus 146 L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-~~-----~~~~L~~L~l~~n 215 (390)
T 3o6n_A 146 LSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-LA-----IPIAVEELDASHN 215 (390)
T ss_dssp EECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-EE-----CCSSCSEEECCSS
T ss_pred EECCCCccCccChhh-ccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-cC-----CCCcceEEECCCC
Confidence 666666665444443 67889999999999999875 35567899999999998863 21 2467888888888
Q ss_pred cCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC
Q 045291 374 ALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453 (682)
Q Consensus 374 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 453 (682)
.+...... ..++|++|++++|.+. ..+ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 216 ~l~~~~~~---~~~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 286 (390)
T 3o6n_A 216 SINVVRGP---VNVELTILKLQHNNLT-DTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--- 286 (390)
T ss_dssp CCCEEECC---CCSSCCEEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE---
T ss_pred eeeecccc---ccccccEEECCCCCCc-ccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc---
Confidence 87754221 2356777777777765 222 22345555555555555555545555555555555555555442
Q ss_pred ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK 533 (682)
Q Consensus 454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~ 533 (682)
++..+..+++|++|++++|++++ .|..+..+++|+.|++++|+++. .+ +..++
T Consensus 287 ----------------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~--~~--~~~~~ 339 (390)
T 3o6n_A 287 ----------------------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVT--LK--LSTHH 339 (390)
T ss_dssp ----------------------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCC--CC--CCTTC
T ss_pred ----------------------cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccce--eC--chhhc
Confidence 23333344555555555555542 23334445556666666666553 21 44556
Q ss_pred CCcEEECCCCcCCC
Q 045291 534 QIESLDLSYNKLNG 547 (682)
Q Consensus 534 ~L~~L~l~~n~l~~ 547 (682)
+|+.|++++|++..
T Consensus 340 ~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 340 TLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSEEECCSSCEEH
T ss_pred cCCEEEcCCCCccc
Confidence 66666666666653
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.8e-31 Score=270.71 Aligned_cols=307 Identities=21% Similarity=0.280 Sum_probs=186.4
Q ss_pred hcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCC
Q 045291 183 LANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAP 262 (682)
Q Consensus 183 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 262 (682)
+..+++|++|++++|.+. .+ ..+..+++|++|++++|.++... .+..+++|+.|++++|.+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~--~~~~~~~~L~~L~l~~n~i~~~~---~~~~l~~L~~L~L~~n~i------------- 100 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SI--QGIEYLTNLEYLNLNGNQITDIS---PLSNLVKLTNLYIGTNKI------------- 100 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CC--TTGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCC-------------
T ss_pred chhcccccEEEEeCCccc-cc--hhhhhcCCccEEEccCCccccch---hhhcCCcCCEEEccCCcc-------------
Confidence 345667777777777766 34 23666677777777777665221 144555555555555543
Q ss_pred cccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccE
Q 045291 263 NFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRF 342 (682)
Q Consensus 263 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 342 (682)
.+ ++. +..+++|++|++++|.+.+... +..+++|++
T Consensus 101 ---------------------------------------~~-~~~--~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~ 136 (347)
T 4fmz_A 101 ---------------------------------------TD-ISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYS 136 (347)
T ss_dssp ---------------------------------------CC-CGG--GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred ---------------------------------------cC-chH--HcCCCcCCEEECcCCcccCchh--hccCCceeE
Confidence 32 121 3344444444444444444322 445556666
Q ss_pred EEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCC
Q 045291 343 LDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN 422 (682)
Q Consensus 343 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n 422 (682)
|++++|......+. + ..+++|++|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++|+.|++++|
T Consensus 137 L~l~~n~~~~~~~~-~-~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 137 LNLGANHNLSDLSP-L-SNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVN 209 (347)
T ss_dssp EECTTCTTCCCCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSS
T ss_pred EECCCCCCcccccc-h-hhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccC
Confidence 66666644323332 2 236666666666666654332 556667777777777665 4443 335667777777777
Q ss_pred cCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcch
Q 045291 423 NLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPV 502 (682)
Q Consensus 423 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 502 (682)
.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. .
T Consensus 210 ~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~ 281 (347)
T 4fmz_A 210 QITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--S 281 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--G
T ss_pred CCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--h
Confidence 6665443 5566777777777777664433 66677777777777777643 3466777777777777777754 3
Q ss_pred hccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCc
Q 045291 503 EFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570 (682)
Q Consensus 503 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 570 (682)
.+..+++|+.|++++|++++ ..+..+..+++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 282 ~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 282 VLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGGCTTCSEEECCSSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhcCCCCCCEEECcCCcCCC-cChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 46677777777777777765 566677777777777777777776555 667777777777777764
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.6e-31 Score=270.20 Aligned_cols=304 Identities=24% Similarity=0.361 Sum_probs=169.1
Q ss_pred CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291 134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS 213 (682)
Q Consensus 134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 213 (682)
+++|++|+++++.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++ .+ ..+..+++
T Consensus 43 l~~L~~L~l~~~~i~~----~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~--~~~~~l~~ 111 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS----IQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DI--SALQNLTN 111 (347)
T ss_dssp HTTCSEEECCSSCCCC----CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CC--GGGTTCTT
T ss_pred cccccEEEEeCCcccc----ch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-Cc--hHHcCCCc
Confidence 5667777777766644 43 36666677777777776664322 666667777777776665 33 24566666
Q ss_pred CcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCE
Q 045291 214 IEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEF 293 (682)
Q Consensus 214 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~ 293 (682)
|++|++++|.+++.. .+..++ +|+.
T Consensus 112 L~~L~l~~n~i~~~~---~~~~l~----------------------------------------------------~L~~ 136 (347)
T 4fmz_A 112 LRELYLNEDNISDIS---PLANLT----------------------------------------------------KMYS 136 (347)
T ss_dssp CSEEECTTSCCCCCG---GGTTCT----------------------------------------------------TCCE
T ss_pred CCEEECcCCcccCch---hhccCC----------------------------------------------------ceeE
Confidence 666666666654211 133333 4444
Q ss_pred EEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCC
Q 045291 294 VDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTN 373 (682)
Q Consensus 294 L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 373 (682)
|++++|.....++. +..+++|++|++++|.+..... +.. +++|++|++++|
T Consensus 137 L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~-------------------------l~~L~~L~l~~n 187 (347)
T 4fmz_A 137 LNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IAN-------------------------LTDLYSLSLNYN 187 (347)
T ss_dssp EECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGG-------------------------CTTCSEEECTTS
T ss_pred EECCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hcc-------------------------CCCCCEEEccCC
Confidence 44444433222221 2333333333333333322111 222 444444444444
Q ss_pred cCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC
Q 045291 374 ALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP 453 (682)
Q Consensus 374 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 453 (682)
.+.+..+ +..+++|++|++++|.+. .++. +..+++|++|++++|++++..+ +..+++|++|++++|.+.+.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred ccccccc--ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence 4443222 444555555555555554 2222 2345555555555555554333 45566666666666666543
Q ss_pred ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCC
Q 045291 454 QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLK 533 (682)
Q Consensus 454 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~ 533 (682)
..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ..| +..++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~--~~~l~ 333 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-IRP--LASLS 333 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC-CGG--GGGCT
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc-ccC--hhhhh
Confidence 3466667777777777776643 346677777777777777777777777777777777777777765 333 66777
Q ss_pred CCcEEECCCCcCC
Q 045291 534 QIESLDLSYNKLN 546 (682)
Q Consensus 534 ~L~~L~l~~n~l~ 546 (682)
+|++|++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 7777777777765
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=6.6e-31 Score=289.02 Aligned_cols=295 Identities=20% Similarity=0.182 Sum_probs=258.4
Q ss_pred CcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhc
Q 045291 282 PKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI 361 (682)
Q Consensus 282 ~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 361 (682)
+..+..+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .+|..++..
T Consensus 68 ~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~ 145 (597)
T 3oja_B 68 AALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 145 (597)
T ss_dssp THHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred HHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhcc
Confidence 445678999999999999998665554 789999999999999999998888999999999999999998 677766666
Q ss_pred CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL 441 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 441 (682)
+++|++|++++|.+.+..|..|..+++|++|++++|.+. .++. ..+++|+.|++++|.+.+.. ..++|+.|
T Consensus 146 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~---~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L 216 (597)
T 3oja_B 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLSTLA-----IPIAVEEL 216 (597)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCG---GGCTTCSEEECCSSCCSEEE-----CCTTCSEE
T ss_pred CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcCh---hhhhhhhhhhcccCcccccc-----CCchhhee
Confidence 999999999999999988889999999999999999998 4442 35889999999999887542 45689999
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291 442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 521 (682)
Q Consensus 442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 521 (682)
++++|.+....+.. .++|+.|++++|.+.+. ..+..+++|++|+|++|.+++..|..|..+++|+.|+|++|.++
T Consensus 217 ~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 217 DASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291 (597)
T ss_dssp ECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC
T ss_pred eccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC
Confidence 99999987543322 36899999999999863 67899999999999999999999999999999999999999998
Q ss_pred CCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
+ +|..+..+++|+.|+|++|++. .+|..+..+++|+.|++++|+++.. | +..++.++.+++.+|++.|+|.
T Consensus 292 ~--l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 292 A--LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp E--EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred C--CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 5 6777788999999999999999 5677788999999999999999854 3 5678899999999999999763
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.4e-31 Score=265.67 Aligned_cols=255 Identities=26% Similarity=0.392 Sum_probs=216.3
Q ss_pred CCCcEEEcCCCCCcc--cCCCCCCCCCCccEEEccC-CcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCC
Q 045291 314 AKLETLFLINDSIGG--PFRLPIHPHRRLRFLDVSN-NNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQ 390 (682)
Q Consensus 314 ~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 390 (682)
.+++.|+++++.+.+ ..+..+..+++|++|++++ |.+.+.+|..+.. +++|++|++++|.+++..|..|..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356666666666665 4555666778888888884 7787778877765 88999999999998888888888899999
Q ss_pred EEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCC-CccEEECCCCcCcccCCccccCCCCCCEEeccC
Q 045291 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLT-NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN 469 (682)
Q Consensus 391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 469 (682)
+|++++|.+.+.+|..+. .+++|++|++++|++++..|..+..++ +|++|++++|.+.+..|..+..++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 999999998877776654 688999999999999888888888887 899999999999888888888887 99999999
Q ss_pred CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc
Q 045291 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM 549 (682)
Q Consensus 470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 549 (682)
|.+.+..|..+..+++|++|++++|.+++..+. +..+++|++|++++|++++ ..|..+..+++|+.|++++|++++.+
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~i 284 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEI 284 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC-cCChHHhcCcCCCEEECcCCcccccC
Confidence 999988899999999999999999999876665 7889999999999999986 68889999999999999999999888
Q ss_pred hhhhhcCCCCCEEEccCccCcccCC
Q 045291 550 PHQLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 550 ~~~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
|.. ..+++|+.+++++|+..|..|
T Consensus 285 p~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 285 PQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred CCC-ccccccChHHhcCCCCccCCC
Confidence 876 788999999999999766544
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=5.1e-29 Score=253.41 Aligned_cols=268 Identities=22% Similarity=0.248 Sum_probs=141.4
Q ss_pred CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369 (682)
Q Consensus 290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 369 (682)
+++.|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+ .++|++|+
T Consensus 53 ~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~---~~~L~~L~ 127 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQELR 127 (330)
T ss_dssp TCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC---CTTCCEEE
T ss_pred CCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhh---cccccEEE
Confidence 4555555555555332222 455555555555555555555555555666666666666555 444433 24566666
Q ss_pred ecCCcCCcCCCcccCCCCCCCEEEccCCcCCC-cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTG-EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448 (682)
Q Consensus 370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 448 (682)
+++|.+.+..+..|.++++|++|++++|.+.. .+....+.++++|+.|++++|+++..... + .++|++|++++|.+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~--~~~L~~L~l~~n~l 204 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-L--PPSLTELHLDGNKI 204 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-C--CTTCSEEECTTSCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-c--cccCCEEECCCCcC
Confidence 66666655555555566666666666665531 12222333455666666666555543221 1 14556666666655
Q ss_pred cccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh
Q 045291 449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST 528 (682)
Q Consensus 449 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 528 (682)
.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ..+..
T Consensus 205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~ 282 (330)
T 1xku_A 205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSND 282 (330)
T ss_dssp CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CCTTS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCc-cChhh
Confidence 5555555555566666666666555544445555556666666666555 344445555556666666665554 33333
Q ss_pred ccC------CCCCcEEECCCCcCCC--CchhhhhcCCCCCEEEccCc
Q 045291 529 FSN------LKQIESLDLSYNKLNG--KMPHQLVELKTLEVFSVAYN 567 (682)
Q Consensus 529 ~~~------l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n 567 (682)
|.. .+.++.|++++|++.. ..|..+..+++++.+++++|
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 322 2455555666555542 33445555555555555555
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.2e-33 Score=295.78 Aligned_cols=390 Identities=21% Similarity=0.133 Sum_probs=206.1
Q ss_pred CCCCcEEEccCCCCCCCCCCcccc-cccCCCCCCEEEccCCCCcc----cCchhhcCCCCCCEEeccCCccccccCCchh
Q 045291 134 MPSLKYLSLSGSILGTNSSRILDQ-GLCSLVHLQELRMADNDLRG----SLPWCLANMTSLRILDVSFNQLTGSISSSPL 208 (682)
Q Consensus 134 l~~L~~L~L~~~~l~~~~~~i~~~-~l~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~ 208 (682)
.++|++|+++++.+.. .+.. .+..+++|++|++++|.+.. .++..+..+++|++|++++|.+.+......+
T Consensus 2 ~~~l~~L~Ls~~~l~~----~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~ 77 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSD----ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 77 (461)
T ss_dssp CEEEEEEEEESCCCCH----HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred CccceehhhhhcccCc----hhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence 3567788888877743 2221 25667788888888887764 3456677778888888888877643211222
Q ss_pred cccC----CCcEEecCCCcCcccc---CccccccCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCC
Q 045291 209 VHLT----SIEMLILSDNHFQIPI---SLEPLFNHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIF 281 (682)
Q Consensus 209 ~~l~----~L~~L~L~~n~l~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 281 (682)
..++ +|++|++++|.++... ....+..+++|++|++++|.+....... +
T Consensus 78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~------------------------l 133 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL------------------------L 133 (461)
T ss_dssp HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH------------------------H
T ss_pred HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH------------------------H
Confidence 3344 5777777777765211 0122344555555555555443211000 0
Q ss_pred Ccc-cccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhh
Q 045291 282 PKF-LYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGD 360 (682)
Q Consensus 282 ~~~-l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 360 (682)
... ....++|+.|++++|.+++..+..+ +..+..+++|++|++++|.+.+..+..+..
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l---------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 192 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPL---------------------ASVLRAKPDFKELTVSNNDINEAGVRVLCQ 192 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHH---------------------HHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHH---------------------HHHHhhCCCCCEEECcCCCcchHHHHHHHH
Confidence 000 0112344555555544443221110 111223345555555555544322222211
Q ss_pred ----cCCCceEEEecCCcCCcC----CCcccCCCCCCCEEEccCCcCCCcCc----hhhhhCCCCCCEEEccCCcCCCc-
Q 045291 361 ----ILPSLFSFNISTNALHGS----IPSSFGNMKFLQILDLSNNHLTGEIP----EYLAVGCVNLNSLALSNNNLQGH- 427 (682)
Q Consensus 361 ----~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~- 427 (682)
..++|++|++++|.++.. ++..+..+++|++|++++|.+.+... ..++..+++|++|++++|+++..
T Consensus 193 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~ 272 (461)
T 1z7x_W 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG 272 (461)
T ss_dssp HHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHH
Confidence 234666666666665542 24445556666666666666542211 22222356666666666666543
Q ss_pred ---ccccCCCCCCccEEECCCCcCcccCCcccc-----CCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCc
Q 045291 428 ---MFSRNFNLTNLKWLLLEGNRFVGEIPQSLS-----KCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNH 495 (682)
Q Consensus 428 ---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~ 495 (682)
.+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 233444466666666666666533222221 225677777777776644 34555666777777777777
Q ss_pred CcCCcchhccC-----CCCCCEEEccCCcCCCC---cchhhccCCCCCcEEECCCCcCCCCchhhhh-----cCCCCCEE
Q 045291 496 LEGPIPVEFCQ-----LDLLQILDISDNNISGR---LIPSTFSNLKQIESLDLSYNKLNGKMPHQLV-----ELKTLEVF 562 (682)
Q Consensus 496 l~~~~~~~~~~-----l~~L~~L~Ls~n~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L 562 (682)
+++..+..+.. .++|+.|++++|++++. .++..+..+++|++|++++|++++.....+. ...+|+.|
T Consensus 353 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L 432 (461)
T 1z7x_W 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEE
T ss_pred cccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhe
Confidence 66544433322 55777777777776520 2455666677777777777776643222221 13456777
Q ss_pred EccCccCccc
Q 045291 563 SVAYNNLSGE 572 (682)
Q Consensus 563 ~l~~n~l~~~ 572 (682)
++.++.+...
T Consensus 433 ~~~~~~~~~~ 442 (461)
T 1z7x_W 433 VLYDIYWSEE 442 (461)
T ss_dssp ECTTCCCCHH
T ss_pred eecccccCHH
Confidence 7766666543
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.2e-29 Score=256.23 Aligned_cols=288 Identities=19% Similarity=0.213 Sum_probs=222.4
Q ss_pred CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369 (682)
Q Consensus 290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 369 (682)
.++.++++++.+. .+|..+ .++++.|++++|.+....+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTT-CTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhC-cCCCCEEE
Confidence 6888888888887 566542 367888999988888877778888888999999988888555655544 88899999
Q ss_pred ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCC--cccccCCCCCCccEEECCCCc
Q 045291 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG--HMFSRNFNLTNLKWLLLEGNR 447 (682)
Q Consensus 370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 447 (682)
+++|.++...+ .+. ++|++|++++|.+. .++...+..+++|+.|++++|.++. ..+..+..+ +|++|++++|.
T Consensus 109 L~~n~l~~l~~-~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 109 ISKNHLVEIPP-NLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp CCSSCCCSCCS-SCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred CCCCcCCccCc-ccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC
Confidence 99888874433 332 78889999998887 6776666678889999999888863 556666666 88889999888
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291 448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS 527 (682)
Q Consensus 448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 527 (682)
+.+ +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|.
T Consensus 184 l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~ 258 (332)
T 2ft3_A 184 LTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS--RVPA 258 (332)
T ss_dssp CSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--BCCT
T ss_pred CCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--ecCh
Confidence 875 444332 68888899999888777788888889999999999888888778888889999999999887 3677
Q ss_pred hccCCCCCcEEECCCCcCCCCchhhhhc------CCCCCEEEccCccCc--ccCCcccccccccCcccccCCC
Q 045291 528 TFSNLKQIESLDLSYNKLNGKMPHQLVE------LKTLEVFSVAYNNLS--GEIPEWTAQFATFNESSYEGNI 592 (682)
Q Consensus 528 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~--~~~~~~~~~~~~l~~~~~~~n~ 592 (682)
.+..+++|+.|++++|++++..+..+.. .++|+.+++++|++. +..|..+..+..++.+++++|.
T Consensus 259 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 7888888999999999888766666654 367888899999887 4455556667777777777663
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8.1e-29 Score=251.94 Aligned_cols=288 Identities=19% Similarity=0.182 Sum_probs=233.0
Q ss_pred CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369 (682)
Q Consensus 290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 369 (682)
+++.++++++.+. .+|.. -.+.++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+.. +++|++|+
T Consensus 32 ~l~~l~~~~~~l~-~lp~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCC-SCCCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEE
T ss_pred CCeEEEecCCCcc-ccCcc---CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEE
Confidence 6888999998887 56653 2368999999999999888878889999999999999998665666654 89999999
Q ss_pred ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCC--cccccCCCCCCccEEECCCCc
Q 045291 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQG--HMFSRNFNLTNLKWLLLEGNR 447 (682)
Q Consensus 370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 447 (682)
+++|.++.. |..+. ++|++|++++|.+. .++...+.++++|+.|++++|.+.. ..+..+..+++|++|++++|.
T Consensus 107 Ls~n~l~~l-~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 107 LSKNQLKEL-PEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp CCSSCCSBC-CSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred CCCCcCCcc-Chhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 999998844 43332 78999999999998 6777667789999999999998864 566778889999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291 448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS 527 (682)
Q Consensus 448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 527 (682)
+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++. +|.
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--lp~ 257 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK--VPG 257 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS--CCT
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc--CCh
Confidence 875 444432 789999999999988778889999999999999999998888888999999999999999984 777
Q ss_pred hccCCCCCcEEECCCCcCCCCchhhhhc------CCCCCEEEccCccCcc--cCCcccccccccCcccccCC
Q 045291 528 TFSNLKQIESLDLSYNKLNGKMPHQLVE------LKTLEVFSVAYNNLSG--EIPEWTAQFATFNESSYEGN 591 (682)
Q Consensus 528 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~l~~--~~~~~~~~~~~l~~~~~~~n 591 (682)
.+..+++|++|++++|++++..+..+.. .++++.+++++|++.. ..|..+..+..++.+++++|
T Consensus 258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 8889999999999999999777666643 3778899999999874 33444555666777777665
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.8e-29 Score=254.53 Aligned_cols=269 Identities=21% Similarity=0.244 Sum_probs=227.1
Q ss_pred CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE
Q 045291 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF 368 (682)
Q Consensus 289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 368 (682)
++++.|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|..++ ++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEE
T ss_pred CCCeEEECCCCcCCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEE
Confidence 57899999999998555544 788999999999999999888888999999999999999997 6776553 799999
Q ss_pred EecCCcCCcCCCcccCCCCCCCEEEccCCcCCC-cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc
Q 045291 369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTG-EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR 447 (682)
Q Consensus 369 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 447 (682)
++++|.+.+..+..|.++++|++|++++|.+.. .+....+..+ +|+.|++++|++++... .+ .++|++|++++|.
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~~--~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-DL--PETLNELHLDHNK 204 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-SS--CSSCSCCBCCSSC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-cc--cCCCCEEECCCCc
Confidence 999999998877889999999999999999852 1333444455 99999999999987443 33 3789999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291 448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS 527 (682)
Q Consensus 448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 527 (682)
+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++ ..+.
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~-~~~~ 282 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK-VGVN 282 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB-CCTT
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc-cChh
Confidence 99888889999999999999999999888888999999999999999999 667778999999999999999986 5566
Q ss_pred hccC------CCCCcEEECCCCcCC--CCchhhhhcCCCCCEEEccCcc
Q 045291 528 TFSN------LKQIESLDLSYNKLN--GKMPHQLVELKTLEVFSVAYNN 568 (682)
Q Consensus 528 ~~~~------l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~ 568 (682)
.|.. .+.|+.|++++|++. ...|..+..+++|+.+++++|.
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6654 367999999999988 6778889999999999999885
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7e-29 Score=262.72 Aligned_cols=252 Identities=22% Similarity=0.202 Sum_probs=206.1
Q ss_pred CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEc
Q 045291 315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394 (682)
Q Consensus 315 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 394 (682)
....++..+..+..+... -.++++.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~---~~~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG---ISTNTRLLNLHENQIQIIKVNSF-KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSC---CCTTCSEEECCSCCCCEECTTTT-SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCC---CCCCCcEEEccCCcCCeeCHHHh-hCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 456777777777765432 23678889999998875444444 44889999999999988887788889999999999
Q ss_pred cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc-CcccCCccccCCCCCCEEeccCCcCC
Q 045291 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR-FVGEIPQSLSKCSSLEGLYLNNNSLS 473 (682)
Q Consensus 395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~ 473 (682)
++|++. .++...+..+++|++|++++|++....+..|..+++|++|++++|. +....+..|.++++|++|++++|.++
T Consensus 120 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CSSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 999887 7777667788899999999999888777788889999999998854 44445557888899999999999887
Q ss_pred CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh
Q 045291 474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL 553 (682)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 553 (682)
.+| .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++ ..+..|.++++|+.|+|++|++++..+..+
T Consensus 199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 444 37788899999999999988888889999999999999999886 667888889999999999999998777888
Q ss_pred hcCCCCCEEEccCccCcccCC
Q 045291 554 VELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 554 ~~l~~L~~L~l~~n~l~~~~~ 574 (682)
..+++|+.|++++|++.|.|.
T Consensus 276 ~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SSCTTCCEEECCSSCEECSST
T ss_pred ccccCCCEEEcCCCCccCCCC
Confidence 888999999999999988776
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.9e-29 Score=262.88 Aligned_cols=252 Identities=20% Similarity=0.177 Sum_probs=207.2
Q ss_pred CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEc
Q 045291 315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394 (682)
Q Consensus 315 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 394 (682)
....++.++..+..+.. . -.++++.|++++|.+.+..+..+. .+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~~iP~-~--~~~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ-G--IPSNTRYLNLMENNIQMIQADTFR-HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCS-C--CCTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCC-C--CCCCccEEECcCCcCceECHHHcC-CCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 45677777777766433 2 236889999999998855555554 4889999999999998888888899999999999
Q ss_pred cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCC-cCcccCCccccCCCCCCEEeccCCcCC
Q 045291 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGN-RFVGEIPQSLSKCSSLEGLYLNNNSLS 473 (682)
Q Consensus 395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 473 (682)
++|.+. .++...+..+++|++|++++|++....+..|..+++|++|++++| .+....+..|.++++|++|++++|.+.
T Consensus 131 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 131 FDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSSCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 999987 777777778899999999999998877778888999999999884 444444557888899999999999988
Q ss_pred CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh
Q 045291 474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL 553 (682)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 553 (682)
+. | .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++ ..+..|.++++|+.|+|++|++++..+..+
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL-IERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCce-ECHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 44 4 47788899999999999988888889999999999999999886 667888889999999999999987777788
Q ss_pred hcCCCCCEEEccCccCcccCC
Q 045291 554 VELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 554 ~~l~~L~~L~l~~n~l~~~~~ 574 (682)
..+++|+.|++++|++.|.|.
T Consensus 287 ~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCTTCCEEECCSSCEECSTT
T ss_pred ccccCCCEEEccCCCcCCCCC
Confidence 888999999999999988776
No 50
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.7e-31 Score=285.54 Aligned_cols=355 Identities=17% Similarity=0.170 Sum_probs=261.8
Q ss_pred CCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCcccc--C-ccccccCCCCcEEEccCCcccccccccCCCCCCc
Q 045291 187 TSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPI--S-LEPLFNHSRLKIFYADNNELNAEITQSHSLTAPN 263 (682)
Q Consensus 187 ~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 263 (682)
++|++|++++|.+++......+..+++|++|++++|.++... . ...+..+++|++|++++|.+.....
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--------- 73 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV--------- 73 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH---------
Confidence 578999999999874332233778999999999999987321 1 1235677999999999998764211
Q ss_pred ccccceeccccCCCCCCCCcccccCC----CCCEEEcCCCCCcCc----CchHHHhcCCCCcEEEcCCCCCcccCCCC--
Q 045291 264 FQLNRLLLSSSYGDGFIFPKFLYHQH----DLEFVDLSHIKMNGE----FPTWLLENNAKLETLFLINDSIGGPFRLP-- 333 (682)
Q Consensus 264 ~~l~~l~l~~~~~~~~~~~~~l~~~~----~L~~L~ls~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-- 333 (682)
......++ +|+.|++++|.+.+. ++.. +..+++|++|++++|.+.+.....
T Consensus 74 ------------------~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 74 ------------------HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp ------------------HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred ------------------HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCcCchHHHHHHH
Confidence 01111222 699999999998753 3444 678899999999999986532221
Q ss_pred ---CCCCCCccEEEccCCcCCCCC----ChhhhhcCCCceEEEecCCcCCcCCCcccC-----CCCCCCEEEccCCcCCC
Q 045291 334 ---IHPHRRLRFLDVSNNNFQGHM----PVEIGDILPSLFSFNISTNALHGSIPSSFG-----NMKFLQILDLSNNHLTG 401 (682)
Q Consensus 334 ---~~~~~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~~~~ 401 (682)
....++|++|++++|.+++.. +..+. .+++|++|++++|.+....+..+. ..++|++|++++|.+.+
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 213 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR-AKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-HCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHh-hCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence 233568999999999987543 22233 378999999999998754333332 36689999999999874
Q ss_pred c----CchhhhhCCCCCCEEEccCCcCCCcc-----cccCCCCCCccEEECCCCcCccc----CCccccCCCCCCEEecc
Q 045291 402 E----IPEYLAVGCVNLNSLALSNNNLQGHM-----FSRNFNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLN 468 (682)
Q Consensus 402 ~----~~~~~~~~~~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~ 468 (682)
. ++..+ ..+++|++|++++|++.+.. +..+..+++|++|++++|.++.. ++..+..+++|++|+++
T Consensus 214 ~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 214 DNCRDLCGIV-ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp THHHHHHHHH-HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHHHHHH-HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECC
Confidence 3 23333 36899999999999887542 22333578999999999998754 56677778999999999
Q ss_pred CCcCCCCchhhhcC-----CCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCcCCCCcchhhcc----C-CCC
Q 045291 469 NNSLSGKIPRWLGN-----LTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGRLIPSTFS----N-LKQ 534 (682)
Q Consensus 469 ~n~~~~~~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~----~-l~~ 534 (682)
+|.+.+..+..+.. .++|++|++++|.+++. .+..+..+++|+.|++++|++++ ..+..+. . .++
T Consensus 293 ~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 293 GNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED-AGVRELCQGLGQPGSV 371 (461)
T ss_dssp TCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH-HHHHHHHHHHTSTTCC
T ss_pred CCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc-ccHHHHHHHHcCCCCc
Confidence 99987554444432 36999999999999865 45567778999999999999875 3333332 2 679
Q ss_pred CcEEECCCCcCCC----CchhhhhcCCCCCEEEccCccCccc
Q 045291 535 IESLDLSYNKLNG----KMPHQLVELKTLEVFSVAYNNLSGE 572 (682)
Q Consensus 535 L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 572 (682)
|++|++++|+++. .++..+..+++|+.|++++|+++..
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 9999999999986 6788888899999999999998754
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=248.30 Aligned_cols=251 Identities=23% Similarity=0.264 Sum_probs=197.8
Q ss_pred cEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcC--CCcccCCCCCCCEEEc
Q 045291 317 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS--IPSSFGNMKFLQILDL 394 (682)
Q Consensus 317 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l 394 (682)
+.++.+++.++.+... -.+++++|++++|.++ .+|...+..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~---~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSC---CCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCC---CCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4677777777665432 2367888888888887 66666555688888888888888743 2455667888888888
Q ss_pred cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCC
Q 045291 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLS 473 (682)
Q Consensus 395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 473 (682)
++|.+. .++..+ ..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 86 s~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 888886 566553 368888888888888876654 56778888888888888888777788888888888888888887
Q ss_pred C-CchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhh
Q 045291 474 G-KIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ 552 (682)
Q Consensus 474 ~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 552 (682)
+ ..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ ..+..+..+++|+.|++++|++.+..|..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeECCCCCCcccCHHH
Confidence 5 467778888888888888888887778888888888888888888875 55567888888888888888888888877
Q ss_pred hhcCC-CCCEEEccCccCcccCC
Q 045291 553 LVELK-TLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 553 l~~l~-~L~~L~l~~n~l~~~~~ 574 (682)
+..++ +|+.|++++|+++|.++
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGG
T ss_pred HHhhhccCCEEEccCCCeecccC
Confidence 87774 88888888888887655
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=248.14 Aligned_cols=248 Identities=21% Similarity=0.200 Sum_probs=144.1
Q ss_pred CEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCC--CChhhhhcCCCceEEE
Q 045291 292 EFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGH--MPVEIGDILPSLFSFN 369 (682)
Q Consensus 292 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~l~~L~~L~ 369 (682)
+.++.+++.++ .+|.. -.+++++|++++|.+..+....|..+++|++|++++|.+... .+..+.. +++|++|+
T Consensus 10 ~~l~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCS-SCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEE
T ss_pred CEEEcCCCCcc-cCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEE
Confidence 45555555554 34432 124566666666666655554555666666666666665421 1333333 56666666
Q ss_pred ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCch-hhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPE-YLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448 (682)
Q Consensus 370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 448 (682)
+++|.+.. .+..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 66666553 3344556666666666666665 3332 3344566666666666666655555565666666666666666
Q ss_pred cc-cCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchh
Q 045291 449 VG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPS 527 (682)
Q Consensus 449 ~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~ 527 (682)
.+ ..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++ ..+.
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~ 241 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQ 241 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB-CSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc-cCHH
Confidence 54 355556666666666666666665555566666666666666666665555556666666666666666654 4455
Q ss_pred hccCCC-CCcEEECCCCcCCC
Q 045291 528 TFSNLK-QIESLDLSYNKLNG 547 (682)
Q Consensus 528 ~~~~l~-~L~~L~l~~n~l~~ 547 (682)
.+..++ +|+.|++++|++..
T Consensus 242 ~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 242 ELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCCCCTTCCEEECTTCCEEC
T ss_pred HHHhhhccCCEEEccCCCeec
Confidence 555553 66666666666653
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.9e-28 Score=241.35 Aligned_cols=248 Identities=21% Similarity=0.226 Sum_probs=202.3
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEcc
Q 045291 341 RFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALS 420 (682)
Q Consensus 341 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~ 420 (682)
++++.+++.++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+. .++...+.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 56777777776 566543 468888888888888777778888888999999888887 4544445578889999999
Q ss_pred CCc-CCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCC
Q 045291 421 NNN-LQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGP 499 (682)
Q Consensus 421 ~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 499 (682)
+|+ +....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 887 7777778888899999999999999887788888999999999999999877777788999999999999999977
Q ss_pred cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccccc
Q 045291 500 IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ 579 (682)
Q Consensus 500 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 579 (682)
.+..|..+++|+.|++++|++++ ..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.++. ...
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~ 246 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPL 246 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHH
T ss_pred CHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHH
Confidence 77789999999999999999986 6688899999999999999999988888899999999999999999987774 122
Q ss_pred ccccCcccccCCCCCC
Q 045291 580 FATFNESSYEGNIFLC 595 (682)
Q Consensus 580 ~~~l~~~~~~~n~~~c 595 (682)
+..++......+...|
T Consensus 247 ~~~l~~~~~~~~~~~c 262 (285)
T 1ozn_A 247 WAWLQKFRGSSSEVPC 262 (285)
T ss_dssp HHHHHHCCSEECCCBE
T ss_pred HHHHHhcccccCcccc
Confidence 2334444444454444
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=251.25 Aligned_cols=282 Identities=17% Similarity=0.148 Sum_probs=229.8
Q ss_pred CCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceE
Q 045291 288 QHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS 367 (682)
Q Consensus 288 ~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 367 (682)
++.....+.+++.++ .+|..+ .++|++|++++|.+.+.....+..+++|++|++++|.+++..+..+.. +++|++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCE
T ss_pred CCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC-CCCCCE
Confidence 444556788888887 566542 358999999999999887778889999999999999998555554544 899999
Q ss_pred EEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCch-hhhhCCCCCCEEEccCC-cCCCcccccCCCCCCccEEECCC
Q 045291 368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPE-YLAVGCVNLNSLALSNN-NLQGHMFSRNFNLTNLKWLLLEG 445 (682)
Q Consensus 368 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 445 (682)
|++++|.+++..+..|.++++|++|++++|++. .++. ..+..+++|++|++++| .+....+..+..+++|++|++++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999999998776667889999999999999997 6766 55667999999999998 46766677888999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhc---cCCCCCCEEEccCCcCCC
Q 045291 446 NRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF---CQLDLLQILDISDNNISG 522 (682)
Q Consensus 446 n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~~~~ 522 (682)
|.+.+..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+ ...+.++.++++++.+++
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 99998888999999999999999999875444455678999999999999987655443 346778899999998864
Q ss_pred C---cchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 523 R---LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 523 ~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
. .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|+++|.+|.
T Consensus 264 ~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 264 ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp HHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 2 2467788999999999999999955545568899999999999999998874
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2e-29 Score=278.46 Aligned_cols=439 Identities=14% Similarity=0.048 Sum_probs=225.9
Q ss_pred cccccCCCCCCCEEecCCCCCCCccccCcccc------------CCCCCCCEEeCCCCCCCcchhHHHhhccCcceeecc
Q 045291 23 LLQSMGSFPSLNTLDLSYNNFTDIAITTTQEL------------HNFTNLEYLTLDESSLHISLLQSIASLFPSLKNLSI 90 (682)
Q Consensus 23 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l------------~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~l~~~ 90 (682)
.+..+..+++|++|+++++.........+... .++++|++|+|++|.+++..+..+...
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~--------- 135 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKA--------- 135 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHH---------
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHh---------
Confidence 44556778889999988763211000001111 156666777776666655444444332
Q ss_pred CccccCcccCCCCCCCCC-CCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEE
Q 045291 91 SYCEVNGVLRGQGFPSFK-SLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELR 169 (682)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~ 169 (682)
++ +|++|++++|.. ........+...+++|++|+|++|.+.....+........+++|++|+
T Consensus 136 ----------------~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~ 198 (592)
T 3ogk_B 136 ----------------RADDLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLN 198 (592)
T ss_dssp ----------------HGGGCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEE
T ss_pred ----------------ccccCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEE
Confidence 11 255555554321 111111222222666666666666552211110111234556666666
Q ss_pred ccCCCCc----ccCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCcc--ccCccccccCCCCcEEE
Q 045291 170 MADNDLR----GSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQI--PISLEPLFNHSRLKIFY 243 (682)
Q Consensus 170 L~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~ 243 (682)
+++|.++ ..++..+..+++|++|++++|.+. .+ +..+..+++|++|+++...... ......+..+++|+.+.
T Consensus 199 L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ 276 (592)
T 3ogk_B 199 FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-EL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG 276 (592)
T ss_dssp CTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE
T ss_pred eeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HH-HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC
Confidence 6666654 233344455666666666666665 34 4556666666666665422110 00011123334444443
Q ss_pred ccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCC
Q 045291 244 ADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN 323 (682)
Q Consensus 244 l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~ 323 (682)
+..+.. ..+|..+..+++|+.|++++|.+++.....++
T Consensus 277 l~~~~~-----------------------------~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~------------- 314 (592)
T 3ogk_B 277 LSYMGP-----------------------------NEMPILFPFAAQIRKLDLLYALLETEDHCTLI------------- 314 (592)
T ss_dssp ETTCCT-----------------------------TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHH-------------
T ss_pred ccccch-----------------------------hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHH-------------
Confidence 333211 11223333444455555555443322222222
Q ss_pred CCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecC-----------CcCCcC-CCcccCCCCCCCE
Q 045291 324 DSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNIST-----------NALHGS-IPSSFGNMKFLQI 391 (682)
Q Consensus 324 ~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-----------n~i~~~-~~~~~~~l~~L~~ 391 (682)
..+++|++|+++ +.+.+.....+...+++|++|++++ +.++.. .+..+..+++|++
T Consensus 315 -----------~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 315 -----------QKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp -----------TTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred -----------HhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 334555555555 2232222223333466677777662 334322 1222344667777
Q ss_pred EEccCCcCCCcCchhhhhCCCCCCEEEcc----CCcCCCc-----ccccCCCCCCccEEECCCCc--CcccCCccc-cCC
Q 045291 392 LDLSNNHLTGEIPEYLAVGCVNLNSLALS----NNNLQGH-----MFSRNFNLTNLKWLLLEGNR--FVGEIPQSL-SKC 459 (682)
Q Consensus 392 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~-~~l 459 (682)
|+++.|.+++.....+...+++|+.|+++ .|.+++. .+..+.++++|+.|++++|. +.+.....+ ..+
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~ 462 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYS 462 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSC
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhC
Confidence 77766666655445554456777777775 4455542 22224457778888876543 443322222 347
Q ss_pred CCCCEEeccCCcCCC-CchhhhcCCCCCCeecCCCCcCcCC-cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291 460 SSLEGLYLNNNSLSG-KIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIES 537 (682)
Q Consensus 460 ~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~ 537 (682)
++|++|++++|++++ .++..+..+++|++|+|++|.+++. .+.....+++|+.|++++|+++..........++.+..
T Consensus 463 ~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~ 542 (592)
T 3ogk_B 463 PNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNI 542 (592)
T ss_dssp TTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEE
T ss_pred ccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEE
Confidence 788888888888765 3445557788888888888887643 23344567888888998888875323333456677766
Q ss_pred EECCCC
Q 045291 538 LDLSYN 543 (682)
Q Consensus 538 L~l~~n 543 (682)
..+..+
T Consensus 543 ~~~~~~ 548 (592)
T 3ogk_B 543 ELIPSR 548 (592)
T ss_dssp EEECCC
T ss_pred EEecCc
Confidence 666554
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=3.5e-27 Score=249.67 Aligned_cols=251 Identities=24% Similarity=0.266 Sum_probs=153.9
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEc
Q 045291 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419 (682)
Q Consensus 340 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 419 (682)
.+.++.++..++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|.+. .++...+.++++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEEC
Confidence 345666666655 555543 245666666666666655566666666666666666665 444444556666666666
Q ss_pred cCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCc-CCCCchhhhcCCCCCCeecCCCCcCcC
Q 045291 420 SNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNS-LSGKIPRWLGNLTRLQYIIMPNNHLEG 498 (682)
Q Consensus 420 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~ 498 (682)
++|+++...+..+..+++|++|++++|.+....+..|.++++|++|++++|+ +....+..|.++++|++|++++|.++.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 6666666555556666666666666666665555566666666666666633 332333355666666666666666663
Q ss_pred CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccc
Q 045291 499 PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTA 578 (682)
Q Consensus 499 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 578 (682)
. | .+..+++|+.|+|++|++++ ..+..|.++++|++|++++|++++..+..|..+++|+.|++++|+++...+..+.
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred c-c-ccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 3 2 35566666666666666664 4456666666666666666666666666666666666666666666655555455
Q ss_pred cccccCcccccCCCCCCCCC
Q 045291 579 QFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 579 ~~~~l~~~~~~~n~~~c~~~ 598 (682)
.+..++.+++.+|||.|+|.
T Consensus 277 ~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp SCTTCCEEECCSSCEECSST
T ss_pred cccCCCEEEcCCCCccCCCC
Confidence 56666666666666666664
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=5.5e-28 Score=248.19 Aligned_cols=280 Identities=17% Similarity=0.147 Sum_probs=236.7
Q ss_pred cCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCE
Q 045291 312 NNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQI 391 (682)
Q Consensus 312 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 391 (682)
.|+.....+.+++.++.+.... .++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..|.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4555566888888888764422 3589999999999984 55433445999999999999999888889999999999
Q ss_pred EEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCC-cCcccCCccccCCCCCCEEeccC
Q 045291 392 LDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGN-RFVGEIPQSLSKCSSLEGLYLNN 469 (682)
Q Consensus 392 L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~ 469 (682)
|++++|++. .++...+..+++|++|++++|++++... ..+..+++|++|++++| .+....+..+.++++|++|++++
T Consensus 105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 999999998 7888777789999999999999997665 57889999999999999 46666678899999999999999
Q ss_pred CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh---ccCCCCCcEEECCCCcCC
Q 045291 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST---FSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~~l~~L~~L~l~~n~l~ 546 (682)
|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|++++ ..+.. ....+.++.++++++.+.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~~~~l~~l~L~~~~l~ 262 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-FHFSELSTGETNSLIKKFTFRNVKIT 262 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT-CCCC------CCCCCCEEEEESCBCC
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc-ccccccccccccchhhcccccccccc
Confidence 99998889999999999999999999986655556678999999999999986 33332 234677899999999887
Q ss_pred C----CchhhhhcCCCCCEEEccCccCcccCCcc-cccccccCcccccCCCCCCCCC
Q 045291 547 G----KMPHQLVELKTLEVFSVAYNNLSGEIPEW-TAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 547 ~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
+ .+|..+..+++|+.|++++|+++ .+|.. +..+++++.+++.+|++.|+|+
T Consensus 263 ~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 263 DESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5 36778899999999999999999 56654 4788999999999999999986
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=4.1e-27 Score=250.10 Aligned_cols=228 Identities=24% Similarity=0.209 Sum_probs=114.3
Q ss_pred CCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEE
Q 045291 314 AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILD 393 (682)
Q Consensus 314 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 393 (682)
++++.|++++|.+.++.+..|..+++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN-GLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc-CcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3455555555555555444555555555555555555432222222 255555555555555544444455555555555
Q ss_pred ccCCcCCCcCchhhhhCCCCCCEEEccCC-cCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcC
Q 045291 394 LSNNHLTGEIPEYLAVGCVNLNSLALSNN-NLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSL 472 (682)
Q Consensus 394 l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 472 (682)
+++|++. .++...+..+++|+.|++++| .+....+..+.++++|++|++++|.+.+. | .+..+++|++|++++|.+
T Consensus 154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCC
T ss_pred CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcC
Confidence 5555554 444444444555555555552 23333333444555555555555555432 2 244455555555555555
Q ss_pred CCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291 473 SGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 473 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
.+..|..|.++++|++|++++|.+++..+..|..+++|+.|+|++|++++ ..+..|..+++|+.|++++|++.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEccCCCcC
Confidence 54445555555555555555555555555555555555555555555543 34444455555555555555443
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3.2e-29 Score=276.86 Aligned_cols=383 Identities=13% Similarity=0.069 Sum_probs=267.2
Q ss_pred CCCCCCEEEccCCCCcccCchhhcC-CC-CCCEEeccCCc-cccccCCchhcccCCCcEEecCCCcCccccCc---cccc
Q 045291 161 SLVHLQELRMADNDLRGSLPWCLAN-MT-SLRILDVSFNQ-LTGSISSSPLVHLTSIEMLILSDNHFQIPISL---EPLF 234 (682)
Q Consensus 161 ~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L~~n~-l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~ 234 (682)
.+++|++|+|++|.+++..+..+.. ++ +|++|++++|. ++....+.....+++|++|++++|.+++.... ....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6778888888888777655555554 33 38888888775 22111022234678888888888876532110 1234
Q ss_pred cCCCCcEEEccCCcccccccccCCCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCC
Q 045291 235 NHSRLKIFYADNNELNAEITQSHSLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNA 314 (682)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~ 314 (682)
.+++|+.|+++.|.+.+... ..++..+..+++|+.|++++|.+.+ ++.. +..++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~------------------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~-~~~~~ 243 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISP------------------------KDLETIARNCRSLVSVKVGDFEILE-LVGF-FKAAA 243 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCH------------------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHH-HHHCT
T ss_pred cCCCccEEEeeccCCCccCH------------------------HHHHHHHhhCCCCcEEeccCccHHH-HHHH-Hhhhh
Confidence 67788888888777642100 0123445678899999999988874 5544 78889
Q ss_pred CCcEEEcCCCCCc---ccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCC-cccCCCCCCC
Q 045291 315 KLETLFLINDSIG---GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIP-SSFGNMKFLQ 390 (682)
Q Consensus 315 ~L~~L~l~~~~l~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~ 390 (682)
+|++|+++..... ......+..+++|+.|+++++... .+|..+ ..+++|++|++++|.++.... ..+..+++|+
T Consensus 244 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~-~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILF-PFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGG-GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred HHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHH-hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 9999999854322 222345667889999999986443 455444 448899999999999764333 4468899999
Q ss_pred EEEccCCcCCCcCchhhhhCCCCCCEEEccC-----------CcCCCcccc-cCCCCCCccEEECCCCcCcccCCccccC
Q 045291 391 ILDLSNNHLTGEIPEYLAVGCVNLNSLALSN-----------NNLQGHMFS-RNFNLTNLKWLLLEGNRFVGEIPQSLSK 458 (682)
Q Consensus 391 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-----------n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 458 (682)
+|+++ +.+.......+...+++|++|++++ +.+++.... ....+++|++|+++.+.+++..+..+..
T Consensus 322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 99999 4443333444555789999999993 456543222 2345899999999888887665555554
Q ss_pred -CCCCCEEecc----CCcCCCC-----chhhhcCCCCCCeecCCCCc--CcCCcchhc-cCCCCCCEEEccCCcCCCCcc
Q 045291 459 -CSSLEGLYLN----NNSLSGK-----IPRWLGNLTRLQYIIMPNNH--LEGPIPVEF-CQLDLLQILDISDNNISGRLI 525 (682)
Q Consensus 459 -l~~L~~L~l~----~n~~~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~ 525 (682)
+++|++|+++ .|.+++. ++..+.++++|++|++++|. +++.....+ ..+++|+.|++++|++++...
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 8999999996 5677753 45557789999999997654 665444444 348899999999999975345
Q ss_pred hhhccCCCCCcEEECCCCcCCCC-chhhhhcCCCCCEEEccCccCccc
Q 045291 526 PSTFSNLKQIESLDLSYNKLNGK-MPHQLVELKTLEVFSVAYNNLSGE 572 (682)
Q Consensus 526 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 572 (682)
+..+.++++|++|++++|+++.. ++.....+++|+.|++++|+++..
T Consensus 481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 66678899999999999998644 344556799999999999998754
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-26 Score=230.73 Aligned_cols=250 Identities=20% Similarity=0.229 Sum_probs=186.9
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCc-CCCcCchhhhhCCCCCC
Q 045291 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH-LTGEIPEYLAVGCVNLN 415 (682)
Q Consensus 337 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~ 415 (682)
.+++++|++++|.+++..+..+ ..+++|++|++++|.+++..+..|.++++|++|++++|. +. .++...+..+++|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCccCHHHc-ccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCC
Confidence 3567777777777763333333 347777788887777777667777788888888888886 54 55555555778888
Q ss_pred EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCc
Q 045291 416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH 495 (682)
Q Consensus 416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 495 (682)
+|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 88888888887777778888888888888888887767778888899999999998886666678888999999999999
Q ss_pred CcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 496 LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 496 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
+++..+..|..+++|+.|++++|++++ ..+..+..+++|+.|++++|++....+.. .....++.+..+.+.+.|..|+
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred ccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 988888889999999999999999986 66677889999999999999887543321 1112345556788899998887
Q ss_pred cccc--ccccCcccccC
Q 045291 576 WTAQ--FATFNESSYEG 590 (682)
Q Consensus 576 ~~~~--~~~l~~~~~~~ 590 (682)
.+.. +..+...++.|
T Consensus 267 ~l~g~~l~~l~~~~l~~ 283 (285)
T 1ozn_A 267 RLAGRDLKRLAANDLQG 283 (285)
T ss_dssp GGTTCBGGGSCGGGSCC
T ss_pred HhCCcChhhcCHHHhcc
Confidence 5433 34444444433
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2e-26 Score=233.04 Aligned_cols=225 Identities=20% Similarity=0.224 Sum_probs=166.8
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEE
Q 045291 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSL 417 (682)
Q Consensus 338 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 417 (682)
..++.|++++|.+. .+|..++. +++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCEE
Confidence 45667777777776 66666655 677777777777777 56666777777777777777776 6666543 57777777
Q ss_pred EccCCcCCCcccccCC---------CCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCe
Q 045291 418 ALSNNNLQGHMFSRNF---------NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQY 488 (682)
Q Consensus 418 ~l~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 488 (682)
++++|++.+..|..+. ++++|++|++++|.+. .+|..+..+++|++|++++|.+.+ +|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 7777766666555443 3778888888888777 567777778888888888888874 4556777888888
Q ss_pred ecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCcc
Q 045291 489 IIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNN 568 (682)
Q Consensus 489 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 568 (682)
|++++|.+.+..|..+..+++|+.|++++|++.+ .+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..+.
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 8888888877777778888888888888877776 667777888888888888888887888888888888888877765
Q ss_pred Cc
Q 045291 569 LS 570 (682)
Q Consensus 569 l~ 570 (682)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 54
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-28 Score=243.65 Aligned_cols=240 Identities=20% Similarity=0.198 Sum_probs=177.9
Q ss_pred CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN 415 (682)
Q Consensus 336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 415 (682)
.+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ ..++|+
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~L~ 102 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIE 102 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTTCC
T ss_pred cCCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCCcC
Confidence 34567777777777764333344 347778888888877765443 777888888888888776 443 247888
Q ss_pred EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhh-cCCCCCCeecCCCC
Q 045291 416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYIIMPNN 494 (682)
Q Consensus 416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n 494 (682)
+|++++|++++..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 8888888887665543 5678888888888887777778888888888888888887666665 46788888888888
Q ss_pred cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCc-ccC
Q 045291 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS-GEI 573 (682)
Q Consensus 495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~ 573 (682)
.+++..+ ...+++|+.|++++|++++ ++..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++. ...
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHH
T ss_pred cCccccc--ccccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCH
Confidence 8876532 2347888999999998875 4555888888999999999888 46677888888999999999888 455
Q ss_pred CcccccccccCcccccCCC
Q 045291 574 PEWTAQFATFNESSYEGNI 592 (682)
Q Consensus 574 ~~~~~~~~~l~~~~~~~n~ 592 (682)
|.++..++.++.+++.++.
T Consensus 255 ~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 255 RDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhccccceEEECCCch
Confidence 6666777777777766443
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.3e-26 Score=231.41 Aligned_cols=224 Identities=19% Similarity=0.254 Sum_probs=203.5
Q ss_pred CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL 441 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 441 (682)
.++++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+. .+++|++|++++|++. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~-~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGG-GGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHh-ccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 579999999999998 56667888999999999999998 8887664 7999999999999999 567788899999999
Q ss_pred ECCCCcCcccCCccccC---------CCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCE
Q 045291 442 LLEGNRFVGEIPQSLSK---------CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQI 512 (682)
Q Consensus 442 ~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 512 (682)
++++|.+.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCE
Confidence 99999888888876654 999999999999998 788889999999999999999996 4557999999999
Q ss_pred EEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCC
Q 045291 513 LDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNI 592 (682)
Q Consensus 513 L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~ 592 (682)
|++++|++.+ .+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++.+.+|+++..++.++.+.+..+.
T Consensus 234 L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 9999999987 788899999999999999999999999999999999999999999999999999999998888777654
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-26 Score=247.24 Aligned_cols=247 Identities=20% Similarity=0.198 Sum_probs=201.8
Q ss_pred CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCC
Q 045291 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLN 415 (682)
Q Consensus 336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 415 (682)
.+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++..+ |..+++|++|++++|.+. .++. .++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcC
Confidence 345788888888888754444444 48888999998888876554 888899999999999887 4442 47899
Q ss_pred EEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhc-CCCCCCeecCCCC
Q 045291 416 SLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG-NLTRLQYIIMPNN 494 (682)
Q Consensus 416 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n 494 (682)
.|++++|.+++..+. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+. .+++|++|+|++|
T Consensus 103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 999999999887665 357899999999999988888899999999999999999987887776 7899999999999
Q ss_pred cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc-cC
Q 045291 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG-EI 573 (682)
Q Consensus 495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~ 573 (682)
.+++..+ ...+++|+.|+|++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.| ..
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccccc--cccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence 9987633 3458999999999999986 55558899999999999999995 67778889999999999999984 45
Q ss_pred CcccccccccCccccc-------CCCCCCCCCC
Q 045291 574 PEWTAQFATFNESSYE-------GNIFLCGLPL 599 (682)
Q Consensus 574 ~~~~~~~~~l~~~~~~-------~n~~~c~~~~ 599 (682)
|.++..+..++.+.+. .+++.|.|+.
T Consensus 255 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HHHHHhCCCCcEEeccccccccCCCcccccCCc
Confidence 5666667777766665 7888887753
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=4.8e-27 Score=236.36 Aligned_cols=249 Identities=20% Similarity=0.221 Sum_probs=194.6
Q ss_pred hcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCC-CCCChhhh------hcCCCceEEEecCCcCCcCCCccc
Q 045291 311 ENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQ-GHMPVEIG------DILPSLFSFNISTNALHGSIPSSF 383 (682)
Q Consensus 311 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~~~------~~l~~L~~L~l~~n~i~~~~~~~~ 383 (682)
+...+|+++++++|.+ . .+..+. ..|+.|++++|.+. ..+|.... ..+++|++|++++|.+++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l-~-~p~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE-A-DLGQFT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT-C-CCHHHH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc-c-cHHHHH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445566666666666 2 122111 12777888888773 34565543 138899999999999998888765
Q ss_pred --CCCCCCCEEEccCCcCCCcCchhhhhCC-----CCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCccc--CCc
Q 045291 384 --GNMKFLQILDLSNNHLTGEIPEYLAVGC-----VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE--IPQ 454 (682)
Q Consensus 384 --~~l~~L~~L~l~~n~~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~ 454 (682)
..+++|++|++++|++.+. |..+. .+ ++|++|++++|++.+..+..+..+++|++|++++|.+.+. .+.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 8999999999999999854 64443 34 8999999999999998888999999999999999997654 233
Q ss_pred cc--cCCCCCCEEeccCCcCCC---CchhhhcCCCCCCeecCCCCcCcCCcc-hhccCCCCCCEEEccCCcCCCCcchhh
Q 045291 455 SL--SKCSSLEGLYLNNNSLSG---KIPRWLGNLTRLQYIIMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLIPST 528 (682)
Q Consensus 455 ~~--~~l~~L~~L~l~~n~~~~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 528 (682)
.+ ..+++|++|++++|.+.+ .....+..+++|++|++++|.+++..| ..+..+++|+.|++++|+++. +|..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~--ip~~ 271 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ--VPKG 271 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS--CCSS
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh--hhhh
Confidence 33 789999999999999983 222445678999999999999998775 456678999999999999984 5665
Q ss_pred ccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291 529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571 (682)
Q Consensus 529 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 571 (682)
+. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 55 8999999999999976 55 8889999999999999875
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.8e-25 Score=218.61 Aligned_cols=227 Identities=21% Similarity=0.251 Sum_probs=189.7
Q ss_pred EEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccC
Q 045291 342 FLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN 421 (682)
Q Consensus 342 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 421 (682)
.++..+..+. .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCC
Confidence 3555555555 566544 357889999999888777778888999999999999887 66665666789999999999
Q ss_pred CcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCC-chhhhcCCCCCCeecCCCCcCcCCc
Q 045291 422 NNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK-IPRWLGNLTRLQYIIMPNNHLEGPI 500 (682)
Q Consensus 422 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~ 500 (682)
|++++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 999888888888999999999999999877777788999999999999999863 5888999999999999999999887
Q ss_pred chhccCCCCCC----EEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 501 PVEFCQLDLLQ----ILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 501 ~~~~~~l~~L~----~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
+..+..+++|+ .|++++|++++ ..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred HHHhhhhhhccccceeeecCCCcccc-cCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 77777777776 89999999985 4445444 45899999999999988777788999999999999999998885
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=6.4e-28 Score=266.65 Aligned_cols=229 Identities=18% Similarity=0.160 Sum_probs=115.3
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcC-CCcccCCCCCCCEEEccC---------CcCCCcCchh
Q 045291 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGS-IPSSFGNMKFLQILDLSN---------NHLTGEIPEY 406 (682)
Q Consensus 337 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~---------n~~~~~~~~~ 406 (682)
+++|++|++++|.+++.....+...+++|++|++++| +... .+.....+++|++|++++ +.+++.....
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 4556666666665443222222334566666666655 2211 112222355666666632 2333222222
Q ss_pred hhhCCCCCCEEEccCCcCCCcccccCC-CCCCccEEECC--C----CcCccc-----CCccccCCCCCCEEeccCCcCCC
Q 045291 407 LAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLE--G----NRFVGE-----IPQSLSKCSSLEGLYLNNNSLSG 474 (682)
Q Consensus 407 ~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~ 474 (682)
+..++++|+.|.+..|.+++.....+. .+++|+.|+++ + +.++.. .+..+..+++|++|++++ .+++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 333466666666666666544333332 35666666666 2 233311 112245566777777765 4444
Q ss_pred CchhhhcC-CCCCCeecCCCCcCcCCcchhc-cCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhh
Q 045291 475 KIPRWLGN-LTRLQYIIMPNNHLEGPIPVEF-CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQ 552 (682)
Q Consensus 475 ~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 552 (682)
..+..+.. +++|++|+|++|.+++.....+ .++++|+.|++++|++++.........+++|+.|++++|+++......
T Consensus 446 ~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 525 (594)
T 2p1m_B 446 KVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKL 525 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHH
T ss_pred HHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHH
Confidence 44444433 6667777777776654433333 456677777777777643112223445667777777777664222222
Q ss_pred h-hcCCCCCEEEccCc
Q 045291 553 L-VELKTLEVFSVAYN 567 (682)
Q Consensus 553 l-~~l~~L~~L~l~~n 567 (682)
+ ..++.|+...+..+
T Consensus 526 l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 526 LGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHCTTEEEEEECSS
T ss_pred HHHhCCCCEEEEecCC
Confidence 3 34566655555544
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.1e-27 Score=236.19 Aligned_cols=266 Identities=15% Similarity=0.172 Sum_probs=213.6
Q ss_pred CCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEe
Q 045291 291 LEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNI 370 (682)
Q Consensus 291 L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 370 (682)
++..+++.+.+. ..+..++..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 455666666664 3344446667788888888888888766677888889999999988875443 344889999999
Q ss_pred cCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcc
Q 045291 371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVG 450 (682)
Q Consensus 371 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 450 (682)
++|.+++.. ..++|++|++++|.+. .++.. .+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 999887443 3478999999999987 44432 46789999999999998888888889999999999999987
Q ss_pred cCCccc-cCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhc
Q 045291 451 EIPQSL-SKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF 529 (682)
Q Consensus 451 ~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 529 (682)
..+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++..+ .+..+++|+.|++++|++++ +|..+
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~--l~~~~ 233 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL--IEKAL 233 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE--ECTTC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccc--hhhHh
Confidence 766666 4789999999999999854 32 3458999999999999996554 48899999999999999984 67889
Q ss_pred cCCCCCcEEECCCCcCC-CCchhhhhcCCCCCEEEccCc-cCcccCC
Q 045291 530 SNLKQIESLDLSYNKLN-GKMPHQLVELKTLEVFSVAYN-NLSGEIP 574 (682)
Q Consensus 530 ~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n-~l~~~~~ 574 (682)
..+++|+.|++++|++. +..+..+..+++|+.+++++| .+.+..|
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 99999999999999998 778888999999999999855 4454333
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2e-24 Score=212.37 Aligned_cols=208 Identities=24% Similarity=0.280 Sum_probs=183.1
Q ss_pred CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEE
Q 045291 363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLL 442 (682)
Q Consensus 363 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 442 (682)
.+.+.++++++.++. +|..+. +++++|++++|.+. .++...+..+++|++|++++|+++...+..|..+++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 467889999999885 454432 67999999999998 67766667899999999999999988777788899999999
Q ss_pred CCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCC
Q 045291 443 LEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 522 (682)
Q Consensus 443 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 522 (682)
+++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|++++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99999998777888999999999999999998888888999999999999999998888889999999999999999986
Q ss_pred CcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 523 RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 523 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
..+..|..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 172 -~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 172 -VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred -eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 6667789999999999999999987777888899999999999999988874
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=8.4e-28 Score=265.68 Aligned_cols=207 Identities=14% Similarity=0.112 Sum_probs=122.3
Q ss_pred cCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCC---------CCCcccCCCCC-CCCCCccEEEccCCcCCCCCCh
Q 045291 287 HQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLIN---------DSIGGPFRLPI-HPHRRLRFLDVSNNNFQGHMPV 356 (682)
Q Consensus 287 ~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~---------~~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~ 356 (682)
.+++|+.|++++| +.+.....+...+++|++|++.. +.+++.....+ ..+++|+.|.+..+.+++....
T Consensus 312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~ 390 (594)
T 2p1m_B 312 QCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALI 390 (594)
T ss_dssp TCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHH
T ss_pred cCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHH
Confidence 4455566666555 33222223344456666666632 22222111111 1256777777777776654444
Q ss_pred hhhhcCCCceEEEec--C----CcCCcC-----CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCC
Q 045291 357 EIGDILPSLFSFNIS--T----NALHGS-----IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQ 425 (682)
Q Consensus 357 ~~~~~l~~L~~L~l~--~----n~i~~~-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 425 (682)
.+...+++|+.|+++ + +.++.. .+..+..+++|++|++++ .+++.....+...+++|+.|++++|.++
T Consensus 391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~ 469 (594)
T 2p1m_B 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDS 469 (594)
T ss_dssp HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSS
T ss_pred HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCc
Confidence 454457888888887 3 344421 112256678888888876 5554444444445788888888888876
Q ss_pred CcccccC-CCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCchhhh-cCCCCCCeecCCCCc
Q 045291 426 GHMFSRN-FNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWL-GNLTRLQYIIMPNNH 495 (682)
Q Consensus 426 ~~~~~~~-~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~ 495 (682)
+.....+ .++++|++|++++|.+++... .....+++|++|++++|+++......+ ..+++|+...+..+.
T Consensus 470 ~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 470 DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred HHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 5544433 457888888888888854332 234557889999999998854433334 456777766666553
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.3e-24 Score=210.03 Aligned_cols=203 Identities=23% Similarity=0.295 Sum_probs=140.1
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEE
Q 045291 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA 418 (682)
Q Consensus 339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 418 (682)
..+.++++++.++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|.+. .++..++..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 4566777777766 455543 246777777777777666666777777777777777776 66666665677777777
Q ss_pred ccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcC
Q 045291 419 LSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG 498 (682)
Q Consensus 419 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 498 (682)
+++|++.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 77777776666666667777777777777776666666777777777777777775555556677777777777777776
Q ss_pred CcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291 499 PIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 499 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 547 (682)
..+..|..+++|+.|++++|++++ ..+..|..+++|+.|++++|++..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCCEEEecCCCeeC
Confidence 666667777777777777777765 455566677777777777777653
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=9.1e-24 Score=229.55 Aligned_cols=248 Identities=23% Similarity=0.271 Sum_probs=205.6
Q ss_pred CCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEE
Q 045291 289 HDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSF 368 (682)
Q Consensus 289 ~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 368 (682)
++|+.|++++|.++ .+|. .+++|++|++++|.++.+.. .+++|++|++++|.++ .+|. .+++|+.|
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT-HLPA----LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCC-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCC-CCCC----CCCCcCEE
Confidence 68999999999998 5564 57899999999999987544 6789999999999998 4555 37899999
Q ss_pred EecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcC
Q 045291 369 NISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRF 448 (682)
Q Consensus 369 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 448 (682)
++++|.+++. |. .+++|++|++++|++. .++. .+++|+.|++++|.+++.. ..+++|+.|++++|.+
T Consensus 127 ~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 127 WIFGNQLTSL-PV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQL 193 (622)
T ss_dssp ECCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred ECCCCCCCcC-CC---CCCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCC
Confidence 9999999864 33 3589999999999997 5654 4678999999999998754 3578999999999999
Q ss_pred cccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhh
Q 045291 449 VGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPST 528 (682)
Q Consensus 449 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~ 528 (682)
.+ +|. .+++|+.|++++|.+. .+|. .+++|++|++++|.+++. | ..+++|+.|++++|++++ +|.
T Consensus 194 ~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~--lp~- 258 (622)
T 3g06_A 194 AS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTS--LPM- 258 (622)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSC--CCC-
T ss_pred CC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCc--CCc-
Confidence 85 343 2579999999999998 4443 358899999999999964 3 466899999999999985 454
Q ss_pred ccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccccccc
Q 045291 529 FSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFA 581 (682)
Q Consensus 529 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 581 (682)
.+++|+.|++++|+++ .+|..+..+++|+.|++++|++++..|..+..+.
T Consensus 259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 6789999999999999 6688899999999999999999988777555443
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.6e-24 Score=214.76 Aligned_cols=205 Identities=22% Similarity=0.193 Sum_probs=172.8
Q ss_pred cCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccE
Q 045291 361 ILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKW 440 (682)
Q Consensus 361 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 440 (682)
.++++++++++++.++.. |..+ .+++++|++++|.+. .++...+..+++|+.|++++|++++..+. ..+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTAL-PPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCSSC-CSCC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccCCccEEECCCCCCCcC-CCCC--CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 478899999999998854 4333 268999999999997 56555666899999999999998875443 67889999
Q ss_pred EECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcC
Q 045291 441 LLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNI 520 (682)
Q Consensus 441 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 520 (682)
|++++|.+. .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 999999987 5677888899999999999999877778889999999999999999988888888999999999999999
Q ss_pred CCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291 521 SGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 521 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
++ ..+..|..+++|+.|++++|+++ .+|..+...++|+.+++++|++.|.+.
T Consensus 161 ~~-l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 161 TE-LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp SC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred Cc-cCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 86 66677888999999999999998 567777778899999999999988763
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2.8e-26 Score=230.73 Aligned_cols=247 Identities=26% Similarity=0.287 Sum_probs=208.5
Q ss_pred CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCC-cCCCcccC-------CCCCCCEEEccCCcCCCcCchhh
Q 045291 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALH-GSIPSSFG-------NMKFLQILDLSNNHLTGEIPEYL 407 (682)
Q Consensus 336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~ 407 (682)
..++|+.|++++|.+ .+|..+... |+.|++++|.+. ...+..+. ++++|++|++++|.+.+.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 456789999999999 788877663 899999999985 34555444 68999999999999998888876
Q ss_pred h-hCCCCCCEEEccCCcCCCcccccCCCC-----CCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCC--chhh
Q 045291 408 A-VGCVNLNSLALSNNNLQGHMFSRNFNL-----TNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK--IPRW 479 (682)
Q Consensus 408 ~-~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~ 479 (682)
+ ..+++|++|++++|++++. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 3 6799999999999999987 6666555 8999999999999988889999999999999999998754 3344
Q ss_pred h--cCCCCCCeecCCCCcCcCC---cchhccCCCCCCEEEccCCcCCCCcch-hhccCCCCCcEEECCCCcCCCCchhhh
Q 045291 480 L--GNLTRLQYIIMPNNHLEGP---IPVEFCQLDLLQILDISDNNISGRLIP-STFSNLKQIESLDLSYNKLNGKMPHQL 553 (682)
Q Consensus 480 ~--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l 553 (682)
+ ..+++|++|++++|++++. ....+..+++|+.|++++|++++ ..| ..+..+++|+.|++++|+++ .+|..+
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS-SCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc-ccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 4 8899999999999999842 23456788999999999999987 343 56777899999999999999 667666
Q ss_pred hcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCC
Q 045291 554 VELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFL 594 (682)
Q Consensus 554 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~ 594 (682)
. ++|+.|++++|++++. |. +..+++++.+++.+|++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 5 8999999999999965 77 888999999999999865
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.2e-24 Score=213.10 Aligned_cols=225 Identities=24% Similarity=0.270 Sum_probs=192.7
Q ss_pred EEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc
Q 045291 368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR 447 (682)
Q Consensus 368 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 447 (682)
.+..+..+. .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|++.+..+..+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l--~~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL--PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSS--CTTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCC--CCCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 444555554 344433 257999999999998 6666566689999999999999998888889999999999999999
Q ss_pred CcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCC-cchhccCCCCCCEEEccCCcCCCCcch
Q 045291 448 FVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGP-IPVEFCQLDLLQILDISDNNISGRLIP 526 (682)
Q Consensus 448 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~ 526 (682)
+.+..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..+..+++|+.|++++|++++ ..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~ 166 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYC 166 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCH
Confidence 9988888999999999999999999977776799999999999999999875 58899999999999999999986 566
Q ss_pred hhccCCCCCc----EEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 527 STFSNLKQIE----SLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 527 ~~~~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
..+..+++|+ +|++++|++.+..+..+ ...+|+.|++++|.++...+..+..+.+++.+++.+|++.|+|+
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 7777777777 99999999996655544 44589999999999997666666889999999999999999996
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=3.9e-23 Score=224.58 Aligned_cols=227 Identities=23% Similarity=0.265 Sum_probs=148.8
Q ss_pred CCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEE
Q 045291 290 DLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFN 369 (682)
Q Consensus 290 ~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 369 (682)
+|+.|++++|.++ .+|. .+++|++|++++|.+..+.. .+++|+.|++++|.++ .+|.. +++|+.|+
T Consensus 82 ~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~-~lp~~----l~~L~~L~ 147 (622)
T 3g06_A 82 ELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLT-SLPVL----PPGLQELS 147 (622)
T ss_dssp TCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCS-CCCCC----CTTCCEEE
T ss_pred CCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCC-cCCCC----CCCCCEEE
Confidence 3444444444443 2332 34455555555555554322 3456667777777665 34432 46777777
Q ss_pred ecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCc
Q 045291 370 ISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFV 449 (682)
Q Consensus 370 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 449 (682)
+++|.+++. |. .+++|+.|++++|.+. .+| ..+++|+.|++++|++++... .+++|+.|++++|.+.
T Consensus 148 Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 148 VSDNQLASL-PA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLT 214 (622)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCS
T ss_pred CcCCcCCCc-CC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccc
Confidence 777776643 22 3456777777777776 555 246777777777777775332 2467888888888776
Q ss_pred ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhc
Q 045291 450 GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF 529 (682)
Q Consensus 450 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 529 (682)
. +|. .+++|++|++++|.+++ +| ..+++|++|++++|.++.+.+ .+++|+.|+|++|+++. +|..+
T Consensus 215 ~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~--lp~~l 280 (622)
T 3g06_A 215 S-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTR--LPESL 280 (622)
T ss_dssp S-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCS--CCGGG
T ss_pred c-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCc--CCHHH
Confidence 3 332 24778888888888874 44 456788888888888885433 56788888888888874 57778
Q ss_pred cCCCCCcEEECCCCcCCCCchhhhhcCC
Q 045291 530 SNLKQIESLDLSYNKLNGKMPHQLVELK 557 (682)
Q Consensus 530 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 557 (682)
..+++|+.|++++|++++..|..+..++
T Consensus 281 ~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp GGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred hhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 8888888888888888887777766544
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.9e-25 Score=236.83 Aligned_cols=244 Identities=16% Similarity=0.176 Sum_probs=194.4
Q ss_pred CCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEc
Q 045291 315 KLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDL 394 (682)
Q Consensus 315 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 394 (682)
+|+.|++++|.+.+..+..|..+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 67777777777777666677777788888888887765444 3347888888888888774432 378888888
Q ss_pred cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCcccc-CCCCCCEEeccCCcCC
Q 045291 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS-KCSSLEGLYLNNNSLS 473 (682)
Q Consensus 395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~ 473 (682)
++|.+.+ ++.. .+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.++
T Consensus 107 ~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 8888873 3332 467899999999999888888888889999999999999887777775 7899999999999998
Q ss_pred CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC-CCchhh
Q 045291 474 GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN-GKMPHQ 552 (682)
Q Consensus 474 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~ 552 (682)
+..+ ...+++|++|+|++|.+++..+. +..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL--IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE--ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc--cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 5533 34689999999999999976554 8889999999999999985 6777889999999999999998 667788
Q ss_pred hhcCCCCCEEEcc-------CccCcccCCc
Q 045291 553 LVELKTLEVFSVA-------YNNLSGEIPE 575 (682)
Q Consensus 553 l~~l~~L~~L~l~-------~n~l~~~~~~ 575 (682)
+..++.|+.++++ .++..|.++.
T Consensus 258 ~~~l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred HHhCCCCcEEeccccccccCCCcccccCCc
Confidence 8888888888887 6666666554
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.4e-23 Score=206.24 Aligned_cols=200 Identities=22% Similarity=0.186 Sum_probs=92.6
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCE
Q 045291 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS 416 (682)
Q Consensus 337 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 416 (682)
++++++++++++.++ .+|..+ .++++.|++++|.+++..+..|..+++|++|++++|.+. .++.. ..+++|++
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGT 81 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCE
T ss_pred cCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCE
Confidence 344445555544444 333332 234445555555544444444444555555555555444 23222 23444555
Q ss_pred EEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcC
Q 045291 417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496 (682)
Q Consensus 417 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 496 (682)
|++++|++.. .+..+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|+|++|++
T Consensus 82 L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 5555554442 233334444555555555554444444444455555555555554444444444445555555555555
Q ss_pred cCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291 497 EGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 497 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
++..+..|..+++|+.|+|++|+++. +|..+...++|+.|++++|++.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~--ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCCCSEEECCSCCBC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCc--cChhhcccccCCeEEeCCCCcc
Confidence 44444444444555555555555442 3333334444555555555443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.4e-23 Score=202.35 Aligned_cols=206 Identities=22% Similarity=0.205 Sum_probs=164.5
Q ss_pred CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL 441 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 441 (682)
+++|+.|++++|.+... ..+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 56777777777776632 24667788888888888876 343 23467888888888888887777777788888888
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291 442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 521 (682)
Q Consensus 442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 521 (682)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|+.|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 88888888777777888888888999888888777777788889999999999888887777888899999999999988
Q ss_pred CCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccc
Q 045291 522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 580 (682)
Q Consensus 522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 580 (682)
+ ..+..+..+++|+.|++++|++.+. ++.|+.++++.|.+++.+|.+++.+
T Consensus 195 ~-~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 195 S-VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred c-cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 6 6677788889999999999988753 4568888899999999888866554
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.5e-22 Score=196.64 Aligned_cols=183 Identities=22% Similarity=0.249 Sum_probs=155.5
Q ss_pred CCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEec
Q 045291 388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL 467 (682)
Q Consensus 388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 467 (682)
..++++++++.+. .+|..+ .++++.|++++|++.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3567777777776 666543 257888888888888777777888888999999998888877788888999999999
Q ss_pred cCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291 468 NNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 468 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 547 (682)
++|.+.+..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++ ..+..|+.+++|+.|++++|++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999987777888899999999999999998888888999999999999999986 666789999999999999999998
Q ss_pred CchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 548 KMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 548 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
..+..+..+++|+.|++++|++.|...+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 8888899999999999999999987443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=9.5e-22 Score=193.41 Aligned_cols=204 Identities=24% Similarity=0.289 Sum_probs=179.5
Q ss_pred CceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEEC
Q 045291 364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL 443 (682)
Q Consensus 364 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 443 (682)
.+..+++.++.+.... ....+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 4555666666665432 3557889999999999987 5554 34699999999999999874 46788999999999
Q ss_pred CCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC
Q 045291 444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 523 (682)
Q Consensus 444 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 523 (682)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 171 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS- 171 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-
Confidence 9999998888889999999999999999998888889999999999999999998888889999999999999999986
Q ss_pred cchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 524 LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 524 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
..+..++.+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 6777789999999999999999998888899999999999999999998885
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=4.1e-22 Score=200.22 Aligned_cols=227 Identities=19% Similarity=0.186 Sum_probs=181.2
Q ss_pred CCccEEEccCCcCCCCCChhh--hhcCCCceEEEecCCcCCcCCCccc--CCCCCCCEEEccCCcCCCcCc---hhhhhC
Q 045291 338 RRLRFLDVSNNNFQGHMPVEI--GDILPSLFSFNISTNALHGSIPSSF--GNMKFLQILDLSNNHLTGEIP---EYLAVG 410 (682)
Q Consensus 338 ~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~---~~~~~~ 410 (682)
..++.+.+.++.+.......+ ...+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 356778888776652211111 1125679999999999998888877 899999999999999986444 222336
Q ss_pred CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCccc--C--CccccCCCCCCEEeccCCcCCCCchh----hhcC
Q 045291 411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGE--I--PQSLSKCSSLEGLYLNNNSLSGKIPR----WLGN 482 (682)
Q Consensus 411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~ 482 (682)
+++|++|++++|++.+..+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++ .++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 89999999999999998888999999999999999997642 1 233467899999999999997 3333 3578
Q ss_pred CCCCCeecCCCCcCcCCcchhccCC---CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCC
Q 045291 483 LTRLQYIIMPNNHLEGPIPVEFCQL---DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTL 559 (682)
Q Consensus 483 l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 559 (682)
+++|++|+|++|.+++..|..+..+ ++|++|+|++|+++. +|..+. ++|++|++++|++++. |. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~--lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ--VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS--CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc--hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 8999999999999998877776666 799999999999984 565553 7999999999999965 33 6788999
Q ss_pred CEEEccCccCcc
Q 045291 560 EVFSVAYNNLSG 571 (682)
Q Consensus 560 ~~L~l~~n~l~~ 571 (682)
+.|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999874
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.4e-22 Score=192.72 Aligned_cols=197 Identities=16% Similarity=0.152 Sum_probs=134.5
Q ss_pred CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCc-CCCcCchhhhhCCCCCCEEEccC-CcCCCcccccCCCCCCccE
Q 045291 363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNH-LTGEIPEYLAVGCVNLNSLALSN-NNLQGHMFSRNFNLTNLKW 440 (682)
Q Consensus 363 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~ 440 (682)
+++++|++++|.+++..+..|.++++|++|++++|. +. .++...+.++++|++|++++ |++++..+..|.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 467777777777776666667777777777777775 55 56655555677777777776 7777666666667777777
Q ss_pred EECCCCcCcccCCccccCCCCCC---EEeccCC-cCCCCchhhhcCCCCCC-eecCCCCcCcCCcchhccCCCCCCEEEc
Q 045291 441 LLLEGNRFVGEIPQSLSKCSSLE---GLYLNNN-SLSGKIPRWLGNLTRLQ-YIIMPNNHLEGPIPVEFCQLDLLQILDI 515 (682)
Q Consensus 441 L~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L 515 (682)
|++++|.+.+ +|. +..+++|+ +|++++| .+.+..+..|.++++|+ +|++++|+++...+..|.. ++|+.|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 7777777764 443 66666666 7777777 77655556677777777 7777777777554455555 67777777
Q ss_pred cCCc-CCCCcchhhccCC-CCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCc
Q 045291 516 SDNN-ISGRLIPSTFSNL-KQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN 567 (682)
Q Consensus 516 s~n~-~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 567 (682)
++|+ +++ ..+..|.++ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 187 ~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCccc-CCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 7774 764 455667777 7777777777777744333 4567777777665
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.9e-21 Score=185.96 Aligned_cols=181 Identities=19% Similarity=0.201 Sum_probs=165.2
Q ss_pred CCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecC
Q 045291 412 VNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIM 491 (682)
Q Consensus 412 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 491 (682)
...++++++++.++.... .+ .+.++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 14 ~~~~~l~~~~~~l~~~p~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPS-GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCS-CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCC-CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 457889999999886543 33 368999999999999888889999999999999999999888888999999999999
Q ss_pred CCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291 492 PNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571 (682)
Q Consensus 492 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 571 (682)
++|.+++..+..|..+++|++|+|++|++++ ..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 9999998888899999999999999999986 667778999999999999999998888889999999999999999998
Q ss_pred cCCcccccccccCcccccCCCCCCC
Q 045291 572 EIPEWTAQFATFNESSYEGNIFLCG 596 (682)
Q Consensus 572 ~~~~~~~~~~~l~~~~~~~n~~~c~ 596 (682)
..+..+..+.+++.+++.+|++.|+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777788899999999999999998
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=9.2e-23 Score=209.69 Aligned_cols=255 Identities=18% Similarity=0.149 Sum_probs=130.0
Q ss_pred EEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCC----CCCCCCC-CccEEEccCCcCCCCCChhhhhc----CC
Q 045291 293 FVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFR----LPIHPHR-RLRFLDVSNNNFQGHMPVEIGDI----LP 363 (682)
Q Consensus 293 ~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~----l~ 363 (682)
..+++.+.+++.+|+. +....+|++|++++|.+.+... ..+..++ +|++|++++|.+++..+..+... .+
T Consensus 2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3567788887766664 4444557777777777766544 4445555 67777777777765444444331 26
Q ss_pred CceEEEecCCcCCcCCCcc----cCCC-CCCCEEEccCCcCCCcCchhhhh---C-CCCCCEEEccCCcCCCcccc----
Q 045291 364 SLFSFNISTNALHGSIPSS----FGNM-KFLQILDLSNNHLTGEIPEYLAV---G-CVNLNSLALSNNNLQGHMFS---- 430 (682)
Q Consensus 364 ~L~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~~~~~~~~~~~~---~-~~~L~~L~l~~n~l~~~~~~---- 430 (682)
+|++|++++|.+++..+.. +..+ ++|++|++++|.+.+..+..+.. . .++|++|++++|++++....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 6667777766666544432 3333 56666666666665333222211 1 24566666666655532221
Q ss_pred cCCCCC-CccEEECCCCcCcccCCc----cccCC-CCCCEEeccCCcCCCC----chhhhcC-CCCCCeecCCCCcCcCC
Q 045291 431 RNFNLT-NLKWLLLEGNRFVGEIPQ----SLSKC-SSLEGLYLNNNSLSGK----IPRWLGN-LTRLQYIIMPNNHLEGP 499 (682)
Q Consensus 431 ~~~~l~-~L~~L~l~~n~~~~~~~~----~~~~l-~~L~~L~l~~n~~~~~----~~~~~~~-l~~L~~L~L~~n~l~~~ 499 (682)
.+...+ +|++|++++|.+.+..+. .+..+ ++|++|++++|.+.+. ++..+.. .++|++|+|++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 222233 555555555555543332 22223 3555555555555431 2333333 23555555555555543
Q ss_pred cc----hhccCCCCCCEEEccCCcCCCC------cchhhccCCCCCcEEECCCCcCCCC
Q 045291 500 IP----VEFCQLDLLQILDISDNNISGR------LIPSTFSNLKQIESLDLSYNKLNGK 548 (682)
Q Consensus 500 ~~----~~~~~l~~L~~L~Ls~n~~~~~------~~~~~~~~l~~L~~L~l~~n~l~~~ 548 (682)
.+ ..+..+++|+.|++++|.+.+. ..+..+..+++|+.|++++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 2234445555555555553220 0112334444555555555555433
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.3e-22 Score=208.48 Aligned_cols=256 Identities=19% Similarity=0.167 Sum_probs=185.8
Q ss_pred EEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCCh---hhhhcCC-CceEEEecCCcCCcCCCcccCCC-----CC
Q 045291 318 TLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPV---EIGDILP-SLFSFNISTNALHGSIPSSFGNM-----KF 388 (682)
Q Consensus 318 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l-----~~ 388 (682)
.++++.|.+++..+..+...++|++|++++|.+++..+. ..+..++ +|++|++++|.+.+..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356778888876665555666799999999998754442 2233467 89999999999887766666554 88
Q ss_pred CCEEEccCCcCCCcCchhhh---hCC-CCCCEEEccCCcCCCccccc----CCC-CCCccEEECCCCcCcccC----Ccc
Q 045291 389 LQILDLSNNHLTGEIPEYLA---VGC-VNLNSLALSNNNLQGHMFSR----NFN-LTNLKWLLLEGNRFVGEI----PQS 455 (682)
Q Consensus 389 L~~L~l~~n~~~~~~~~~~~---~~~-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~n~~~~~~----~~~ 455 (682)
|++|++++|.+.+..+..+. ..+ ++|++|++++|++++..+.. +.. .++|++|++++|.+.+.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999998755444332 233 78999999999988665543 333 358999999999887533 344
Q ss_pred ccCCC-CCCEEeccCCcCCCCchhhh----cCC-CCCCeecCCCCcCcCC----cchhccC-CCCCCEEEccCCcCCCCc
Q 045291 456 LSKCS-SLEGLYLNNNSLSGKIPRWL----GNL-TRLQYIIMPNNHLEGP----IPVEFCQ-LDLLQILDISDNNISGRL 524 (682)
Q Consensus 456 ~~~l~-~L~~L~l~~n~~~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~~~~~~ 524 (682)
+..++ +|++|++++|.+++..+..+ ..+ ++|++|+|++|.+++. ++..+.. .++|+.|+|++|++++ .
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~ 240 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG-P 240 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC-C
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc-H
Confidence 45555 89999999999887666444 445 5999999999998863 3444544 4589999999999876 3
Q ss_pred c----hhhccCCCCCcEEECCCCcCCCCchh-------hhhcCCCCCEEEccCccCcccCC
Q 045291 525 I----PSTFSNLKQIESLDLSYNKLNGKMPH-------QLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 525 ~----~~~~~~l~~L~~L~l~~n~l~~~~~~-------~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
. ...+..+++|++|++++|.+....+. .+..+++|+.||+++|++....+
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 2 24457788999999999986654443 45567788899999999876544
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.3e-20 Score=188.65 Aligned_cols=192 Identities=23% Similarity=0.359 Sum_probs=148.1
Q ss_pred CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL 441 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 441 (682)
+++|++|++++|.+... + .+..+++|++|++++|.+. .++. +..+++|++|++++|++.+. ..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 55677777777766643 2 4666777777777777776 4444 44677777777777777654 256678888888
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291 442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 521 (682)
Q Consensus 442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 521 (682)
++++|.+.+. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 8888888754 2 37888889999999988875544 7888999999999999886554 888999999999999998
Q ss_pred CCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcc
Q 045291 522 GRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSG 571 (682)
Q Consensus 522 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 571 (682)
+ . +. +..+++|++|++++|++++..+ +..+++|+.|++++|++++
T Consensus 187 ~-~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 187 D-I-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp C-C-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred c-C-hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 6 3 32 7888999999999999986553 7889999999999999975
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.9e-22 Score=203.34 Aligned_cols=256 Identities=17% Similarity=0.166 Sum_probs=151.2
Q ss_pred CCCEEEcCCCCCcCcCchHHHhcC--CCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceE
Q 045291 290 DLEFVDLSHIKMNGEFPTWLLENN--AKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS 367 (682)
Q Consensus 290 ~L~~L~ls~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 367 (682)
.++.++++++.+. +. .+..+ +.++.+++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 48 ~~~~l~l~~~~~~---~~-~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~-------------- 108 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PD-VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS-------------- 108 (336)
T ss_dssp TSSEEECTTCBCC---HH-HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH--------------
T ss_pred hheeeccccccCC---HH-HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH--------------
Confidence 3667777777654 22 23333 5566666666655554332 22345555555555544322
Q ss_pred EEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCC-cCCCc-ccccCCCCCCccEEECCC
Q 045291 368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNN-NLQGH-MFSRNFNLTNLKWLLLEG 445 (682)
Q Consensus 368 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~ 445 (682)
..+..+..+++|++|++++|.+.+..+..+. .+++|++|++++| .+++. .+..+..+++|++|++++
T Consensus 109 ----------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 109 ----------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp ----------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred ----------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 0333444445555555555544433333222 3555555555555 34431 233344556666666666
Q ss_pred C-cCccc-CCccccCCC-CCCEEeccCC--cCC-CCchhhhcCCCCCCeecCCCCc-CcCCcchhccCCCCCCEEEccCC
Q 045291 446 N-RFVGE-IPQSLSKCS-SLEGLYLNNN--SLS-GKIPRWLGNLTRLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISDN 518 (682)
Q Consensus 446 n-~~~~~-~~~~~~~l~-~L~~L~l~~n--~~~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 518 (682)
| .+.+. .+..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|
T Consensus 178 ~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 6 55543 345566677 7888888777 444 3556677778888888888888 66666777888889999999988
Q ss_pred c-CCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccccc
Q 045291 519 N-ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQ 579 (682)
Q Consensus 519 ~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 579 (682)
. +.. .....+..+++|+.|++++| +....-..+. ..+..|++++|++++..|.+.+.
T Consensus 258 ~~~~~-~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 258 YDIIP-ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCG-GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCH-HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 5 321 22235778899999999988 4432222222 23556668999999888875443
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=3e-21 Score=186.13 Aligned_cols=196 Identities=18% Similarity=0.184 Sum_probs=129.2
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCc-CCcCCCcccCCCCCCCEEEccC-CcCCCcCchhhhhCCCCCCE
Q 045291 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNA-LHGSIPSSFGNMKFLQILDLSN-NHLTGEIPEYLAVGCVNLNS 416 (682)
Q Consensus 339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~ 416 (682)
++++|++++|.++ .++...+..+++|++|++++|. ++...+..|.++++|++|++++ |++. .++...+.++++|++
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 5566666666665 3333223336666666666665 5555555666666666666666 6665 555555556666666
Q ss_pred EEccCCcCCCcccccCCCCCCcc---EEECCCC-cCcccCCccccCCCCCC-EEeccCCcCCCCchhhhcCCCCCCeecC
Q 045291 417 LALSNNNLQGHMFSRNFNLTNLK---WLLLEGN-RFVGEIPQSLSKCSSLE-GLYLNNNSLSGKIPRWLGNLTRLQYIIM 491 (682)
Q Consensus 417 L~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~l~~L~~L~L 491 (682)
|++++|++++. +. +..+++|+ +|++++| .+.+..+..|.++++|+ +|++++|.+....+..+.. ++|++|++
T Consensus 110 L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 66666666652 22 55666666 7777777 77766666677788888 8888888877433344444 78888888
Q ss_pred CCCc-CcCCcchhccCC-CCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCC
Q 045291 492 PNNH-LEGPIPVEFCQL-DLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543 (682)
Q Consensus 492 ~~n~-l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n 543 (682)
++|+ +++..+..|..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~--l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA--LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC--CCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCcccc--CChh--HhccCceeeccCc
Confidence 8884 876767778888 888888888888875 3332 5677888888776
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.6e-22 Score=206.13 Aligned_cols=246 Identities=20% Similarity=0.218 Sum_probs=193.6
Q ss_pred CccEEEccCCcCCCCCChhhhhcC--CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCE
Q 045291 339 RLRFLDVSNNNFQGHMPVEIGDIL--PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS 416 (682)
Q Consensus 339 ~L~~L~l~~n~~~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 416 (682)
.++.++++++.+. +..+.. + ++++.+++++|.+.+..+. +..+++|++|++++|.+.+......+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4788999988775 233333 4 7999999999999877665 4578999999999999874423344558999999
Q ss_pred EEccCCcCCCcccccCCCCCCccEEECCCC-cCccc-CCccccCCCCCCEEeccCC-cCCCC-chhhhcCCC-CCCeecC
Q 045291 417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGN-RFVGE-IPQSLSKCSSLEGLYLNNN-SLSGK-IPRWLGNLT-RLQYIIM 491 (682)
Q Consensus 417 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~L 491 (682)
|++++|.+++..+..+..+++|++|++++| .+++. .+..+.++++|++|++++| .+++. ++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999999888888888999999999999 56653 5667888999999999999 88754 677788999 9999999
Q ss_pred CCC--cCc-CCcchhccCCCCCCEEEccCCc-CCCCcchhhccCCCCCcEEECCCCc-CCCCchhhhhcCCCCCEEEccC
Q 045291 492 PNN--HLE-GPIPVEFCQLDLLQILDISDNN-ISGRLIPSTFSNLKQIESLDLSYNK-LNGKMPHQLVELKTLEVFSVAY 566 (682)
Q Consensus 492 ~~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~ 566 (682)
++| .++ +..+..+..+++|+.|++++|. +++ ..+..+..+++|++|++++|. +.......+..+++|+.|++++
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 999 455 3556677889999999999999 664 567788999999999999996 3322223578899999999999
Q ss_pred ccCcccCCcccccc-cccCcccccCCCCC
Q 045291 567 NNLSGEIPEWTAQF-ATFNESSYEGNIFL 594 (682)
Q Consensus 567 n~l~~~~~~~~~~~-~~l~~~~~~~n~~~ 594 (682)
| ++ .+.+..+ ..+..+++..|...
T Consensus 282 ~-i~---~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 282 I-VP---DGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp S-SC---TTCHHHHHHHSTTSEESCCCSC
T ss_pred c-cC---HHHHHHHHhhCcceEEecccCc
Confidence 9 32 1123333 34677777666544
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=194.56 Aligned_cols=227 Identities=18% Similarity=0.175 Sum_probs=135.1
Q ss_pred CCCEEEcCCCCCcCcCchHH--HhcCCCCcEEEcCCCCCcccCCCCC--CCCCCccEEEccCCcCCCCCC----hhhhhc
Q 045291 290 DLEFVDLSHIKMNGEFPTWL--LENNAKLETLFLINDSIGGPFRLPI--HPHRRLRFLDVSNNNFQGHMP----VEIGDI 361 (682)
Q Consensus 290 ~L~~L~ls~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~~L~~L~l~~n~~~~~~~----~~~~~~ 361 (682)
.++.+.+.++.++......+ +...++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+. .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence 46778888777653221111 1234668888888888887777666 778888888888888875444 1222 4
Q ss_pred CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCc--CchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCcc
Q 045291 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGE--IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLK 439 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 439 (682)
+++|++|++++|.+.+..+..|..+++|++|++++|++.+. ++... .+..+++|+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------~~~~l~~L~ 200 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL-----------------------CPHKFPAIQ 200 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS-----------------------CTTSSCCCC
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH-----------------------hhhcCCCCC
Confidence 77888888888888777777777778888888888776422 11111 112344444
Q ss_pred EEECCCCcCcccCC--c-cccCCCCCCEEeccCCcCCCCchhhhcCC---CCCCeecCCCCcCcCCcchhccCCCCCCEE
Q 045291 440 WLLLEGNRFVGEIP--Q-SLSKCSSLEGLYLNNNSLSGKIPRWLGNL---TRLQYIIMPNNHLEGPIPVEFCQLDLLQIL 513 (682)
Q Consensus 440 ~L~l~~n~~~~~~~--~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 513 (682)
+|++++|.++...+ . .+..+++|++|++++|.+.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 45555554431110 0 23445555555555555554444444443 46666666666666 3333332 567777
Q ss_pred EccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291 514 DISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 514 ~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
+|++|++++ .|. +..+++|+.|++++|+++
T Consensus 278 ~Ls~N~l~~--~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 278 DLSSNRLNR--APQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp ECCSCCCCS--CCC-TTSCCCCSCEECSSTTTS
T ss_pred ECCCCcCCC--Cch-hhhCCCccEEECcCCCCC
Confidence 777777664 222 456667777777777665
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.3e-22 Score=207.74 Aligned_cols=245 Identities=17% Similarity=0.237 Sum_probs=143.3
Q ss_pred HhcCCCCcEEEcCCCCCcccCC----CCCCCCCCccEEEccCCcC---CCCCChhhhhcCCCceEEEecCCcCCcCCCcc
Q 045291 310 LENNAKLETLFLINDSIGGPFR----LPIHPHRRLRFLDVSNNNF---QGHMPVEIGDILPSLFSFNISTNALHGSIPSS 382 (682)
Q Consensus 310 ~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~~---~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 382 (682)
+..+++|++|++++|.+..... ..+..+++|++|++++|.+ .+.+|..+.. +...
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~------------------l~~~ 89 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL------------------LLQA 89 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH------------------HHHH
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH------------------HHHH
Confidence 4566777777777777665322 2355666777777776533 2333433310 0012
Q ss_pred cCCCCCCCEEEccCCcCCCc----CchhhhhCCCCCCEEEccCCcCCCcccccC----CCC---------CCccEEECCC
Q 045291 383 FGNMKFLQILDLSNNHLTGE----IPEYLAVGCVNLNSLALSNNNLQGHMFSRN----FNL---------TNLKWLLLEG 445 (682)
Q Consensus 383 ~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~l~~ 445 (682)
+..+++|++|++++|.+.+. ++..+ ..+++|++|++++|.++...+..+ ..+ ++|++|++++
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHH-HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHH-HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 23445555555555554421 22222 234555555555555442222111 112 5667777777
Q ss_pred CcCcc-cCC---ccccCCCCCCEEeccCCcCCC-----CchhhhcCCCCCCeecCCCCcCc----CCcchhccCCCCCCE
Q 045291 446 NRFVG-EIP---QSLSKCSSLEGLYLNNNSLSG-----KIPRWLGNLTRLQYIIMPNNHLE----GPIPVEFCQLDLLQI 512 (682)
Q Consensus 446 n~~~~-~~~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~ 512 (682)
|.+.. ..+ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..++..+..+++|+.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~ 248 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence 66652 222 355566777777777777652 23335667777777777777775 455666777778888
Q ss_pred EEccCCcCCCCc----chhhcc--CCCCCcEEECCCCcCCC----Cchhhh-hcCCCCCEEEccCccCcccCC
Q 045291 513 LDISDNNISGRL----IPSTFS--NLKQIESLDLSYNKLNG----KMPHQL-VELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 513 L~Ls~n~~~~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~~ 574 (682)
|+|++|++++ . ++..+. .+++|+.|++++|.++. .+|..+ ..+++|+.|++++|++++..+
T Consensus 249 L~L~~n~i~~-~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 249 LGLNDCLLSA-RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp EECTTCCCCH-HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred EECCCCCCch-hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 8888887764 2 244553 37788888888888876 366666 557888888888888876553
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.5e-20 Score=186.55 Aligned_cols=192 Identities=21% Similarity=0.338 Sum_probs=132.4
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCE
Q 045291 337 HRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNS 416 (682)
Q Consensus 337 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~ 416 (682)
+++|++|++++|.+. .++ .+. .+++|++|++++|.+.+..+ +..+++|++|++++|++. .++. +..+++|++
T Consensus 40 l~~L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCCE
T ss_pred cCCcCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCCCCE
Confidence 445666666666665 333 232 36677777777776664433 667777777777777765 4442 335777777
Q ss_pred EEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcC
Q 045291 417 LALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHL 496 (682)
Q Consensus 417 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 496 (682)
|++++|++++.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 777777776543 26677778888888877765433 6777888888888888775433 77788888888888888
Q ss_pred cCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291 497 EGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 497 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 547 (682)
++..+ +..+++|+.|++++|++++ .+ .+..+++|+.|++++|++++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISD--VS-PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCB--CG-GGTTCTTCCEEEEEEEEEEC
T ss_pred CcChh--hcCCCCCCEEEccCCccCc--cc-cccCCCCCCEEEccCCeeec
Confidence 76544 6778888888888888875 33 37788888888888888874
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.2e-21 Score=195.51 Aligned_cols=242 Identities=20% Similarity=0.101 Sum_probs=145.0
Q ss_pred cEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCC-CcccCCCCCCCE-EEc
Q 045291 317 ETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSI-PSSFGNMKFLQI-LDL 394 (682)
Q Consensus 317 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~-L~l 394 (682)
+.++.++++++.+... + .+++++|++++|+++ .+|...+..+++|++|+|++|.+.+.+ +..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~iP~~-l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSD-L--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSCCTT-C--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCccCcC-c--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3455666666654321 1 346777777777776 555554445777777777777765433 346667776654 444
Q ss_pred cCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCC-CcCcccCCccccCCC-CCCEEeccCCcC
Q 045291 395 SNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEG-NRFVGEIPQSLSKCS-SLEGLYLNNNSL 472 (682)
Q Consensus 395 ~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~-~L~~L~l~~n~~ 472 (682)
.+|++. .++...+.++++|++|++++|++....+..+....++..|++.+ +.+....+..|..+. .++.|++++|.+
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 556665 56555566677777777777777766655555566666777654 445544445555553 466777777777
Q ss_pred CCCchhhhcCCCCCCeecCCC-CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchh
Q 045291 473 SGKIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH 551 (682)
Q Consensus 473 ~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 551 (682)
+. ++.......+|+++++.+ |.++.+.+.+|.++++|+.|++++|+++. ..+..| .+|++|.+.++.-...+|.
T Consensus 167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~-lp~~~~---~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 167 QE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPSYGL---ENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC-CCSSSC---TTCCEEECTTCTTCCCCCC
T ss_pred cC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc-cChhhh---ccchHhhhccCCCcCcCCC
Confidence 63 333333455677777754 55665555667777777777777777764 333333 3444444444433334443
Q ss_pred hhhcCCCCCEEEccCccC
Q 045291 552 QLVELKTLEVFSVAYNNL 569 (682)
Q Consensus 552 ~l~~l~~L~~L~l~~n~l 569 (682)
+..+++|+.++++++..
T Consensus 242 -l~~l~~L~~l~l~~~~~ 258 (350)
T 4ay9_X 242 -LEKLVALMEASLTYPSH 258 (350)
T ss_dssp -TTTCCSCCEEECSCHHH
T ss_pred -chhCcChhhCcCCCCcc
Confidence 56677777777765433
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=4.1e-22 Score=207.07 Aligned_cols=244 Identities=18% Similarity=0.226 Sum_probs=193.7
Q ss_pred CCChhhhhcCCCceEEEecCCcCCcCCC----cccCCCCCCCEEEccCCcC---CCcCchhh------hhCCCCCCEEEc
Q 045291 353 HMPVEIGDILPSLFSFNISTNALHGSIP----SSFGNMKFLQILDLSNNHL---TGEIPEYL------AVGCVNLNSLAL 419 (682)
Q Consensus 353 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~~---~~~~~~~~------~~~~~~L~~L~l 419 (682)
.++..+.. +++|+.|++++|.+....+ ..+..+++|++|++++|.+ .+.+|..+ +..+++|++|++
T Consensus 23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 44555544 7899999999998876533 4577899999999999754 34455444 247899999999
Q ss_pred cCCcCCC----cccccCCCCCCccEEECCCCcCcccCCcc----ccCC---------CCCCEEeccCCcCC-CCch---h
Q 045291 420 SNNNLQG----HMFSRNFNLTNLKWLLLEGNRFVGEIPQS----LSKC---------SSLEGLYLNNNSLS-GKIP---R 478 (682)
Q Consensus 420 ~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~l---------~~L~~L~l~~n~~~-~~~~---~ 478 (682)
++|.+.. ..+..+..+++|++|++++|.+....+.. +..+ ++|++|++++|++. +.++ .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9999987 35667778999999999999987543333 3334 89999999999997 3444 4
Q ss_pred hhcCCCCCCeecCCCCcCcC-----CcchhccCCCCCCEEEccCCcCCC---CcchhhccCCCCCcEEECCCCcCCCC--
Q 045291 479 WLGNLTRLQYIIMPNNHLEG-----PIPVEFCQLDLLQILDISDNNISG---RLIPSTFSNLKQIESLDLSYNKLNGK-- 548 (682)
Q Consensus 479 ~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-- 548 (682)
.+..+++|++|++++|.++. ..+..+..+++|+.|+|++|.++. ..++..+..+++|+.|+|++|+++..
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 67789999999999999983 334478899999999999999951 14678899999999999999999865
Q ss_pred --chhhhhc--CCCCCEEEccCccCcc----cCCccc-ccccccCcccccCCCCCCCC
Q 045291 549 --MPHQLVE--LKTLEVFSVAYNNLSG----EIPEWT-AQFATFNESSYEGNIFLCGL 597 (682)
Q Consensus 549 --~~~~l~~--l~~L~~L~l~~n~l~~----~~~~~~-~~~~~l~~~~~~~n~~~c~~ 597 (682)
++..+.. +++|+.|++++|+++. .+|..+ ..+++++.+++.+|+.....
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 4666644 8999999999999997 477656 45799999999999877654
No 96
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.5e-20 Score=176.52 Aligned_cols=156 Identities=22% Similarity=0.223 Sum_probs=141.3
Q ss_pred CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCC
Q 045291 415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494 (682)
Q Consensus 415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 494 (682)
+.++.+++.++.... .+ .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~-~l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NL--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCS-SC--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCC-cc--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 678889988886543 33 368999999999999888889999999999999999999888999999999999999999
Q ss_pred cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
.++...+..|.++++|+.|+|++|++++ ..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 9998888889999999999999999997 778899999999999999999998888889999999999999999998665
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.1e-19 Score=171.14 Aligned_cols=179 Identities=21% Similarity=0.206 Sum_probs=132.8
Q ss_pred CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccC
Q 045291 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN 469 (682)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 469 (682)
+.++.+++.+. .+|... .++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 34555555554 455432 34677777777777666666666777777777777777766666677788888888888
Q ss_pred CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCc
Q 045291 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKM 549 (682)
Q Consensus 470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 549 (682)
|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++ ..+..+..+++|+.|++++|.+.+
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~-- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDC-- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBCC--
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCCCeec--
Confidence 88876666667788888888888888887777778888888888888888875 556668888888888888887764
Q ss_pred hhhhhcCCCCCEEEccCccCcccCCcccccc
Q 045291 550 PHQLVELKTLEVFSVAYNNLSGEIPEWTAQF 580 (682)
Q Consensus 550 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 580 (682)
.+++|+.|+++.|.+++.+|++++.+
T Consensus 163 -----~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 -----TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -----CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -----CCCCHHHHHHHHHhCCceeeccCccc
Confidence 34578888888899988888765544
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.1e-19 Score=185.52 Aligned_cols=240 Identities=17% Similarity=0.173 Sum_probs=180.0
Q ss_pred CEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceE-EEe
Q 045291 292 EFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS-FNI 370 (682)
Q Consensus 292 ~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~-L~l 370 (682)
+.++.++++++ .+|..+ .+++++|++++|.++.+...+|.++++|++|++++|.+.+.+|...+..++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777888887 667543 3578999999999998888888899999999999998876777766666777665 566
Q ss_pred cCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccC-CcCCCcccccCCCCC-CccEEECCCCcC
Q 045291 371 STNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSN-NNLQGHMFSRNFNLT-NLKWLLLEGNRF 448 (682)
Q Consensus 371 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~~ 448 (682)
..|.++...+..|..+++|++|++++|++. .++...+....++..+++.+ +++.......|..+. .++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 778888888888999999999999999987 66655554566778888865 567666666666654 688899999998
Q ss_pred cccCCccccCCCCCCEEeccC-CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCc-CCCCcch
Q 045291 449 VGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLIP 526 (682)
Q Consensus 449 ~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~ 526 (682)
..+.+..| ...+|+++++.+ |.++...++.|.++++|++|++++|+++...+..| .+|+.|.+.++. ++ ..|
T Consensus 167 ~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~--~lP 240 (350)
T 4ay9_X 167 QEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLK--KLP 240 (350)
T ss_dssp CEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCC--CCC
T ss_pred cCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcC--cCC
Confidence 86555555 456788999875 56665555678889999999999999987666554 456666655543 43 344
Q ss_pred hhccCCCCCcEEECCCC
Q 045291 527 STFSNLKQIESLDLSYN 543 (682)
Q Consensus 527 ~~~~~l~~L~~L~l~~n 543 (682)
.+..+++|+.+++.++
T Consensus 241 -~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 -TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTTCCSCCEEECSCH
T ss_pred -CchhCcChhhCcCCCC
Confidence 4778889999998764
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=1.5e-19 Score=170.03 Aligned_cols=162 Identities=25% Similarity=0.219 Sum_probs=93.4
Q ss_pred CCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEec
Q 045291 388 FLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYL 467 (682)
Q Consensus 388 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 467 (682)
+|++|++++|.+. .++...+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 3444444444443 333333334444444444444444444444445555555555555555444445556666666666
Q ss_pred cCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291 468 NNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 468 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 547 (682)
++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.+ .+++|+.|+++.|++++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC--------CTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec--------CCCCHHHHHHHHHhCCc
Confidence 6666665555556666666666666666666555566667777777777776653 34567777777777777
Q ss_pred CchhhhhcCCC
Q 045291 548 KMPHQLVELKT 558 (682)
Q Consensus 548 ~~~~~l~~l~~ 558 (682)
.+|..++.++.
T Consensus 180 ~ip~~~~~l~~ 190 (208)
T 2o6s_A 180 VVRNSAGSVAP 190 (208)
T ss_dssp TBBCTTSSBCT
T ss_pred eeeccCccccC
Confidence 77766665544
No 100
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.1e-19 Score=186.36 Aligned_cols=180 Identities=28% Similarity=0.255 Sum_probs=137.7
Q ss_pred CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCC-CCCCccEEECCCCcCcccCCccccCCCCCCEEecc
Q 045291 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNF-NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN 468 (682)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 468 (682)
+.++++++.+. .+|..+ ...++.|++++|++++..+..+. .+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46667777665 566543 23567777777777776666666 77888888888888877777778888888888888
Q ss_pred CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhc---cCCCCCcEEECCCCcC
Q 045291 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTF---SNLKQIESLDLSYNKL 545 (682)
Q Consensus 469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~---~~l~~L~~L~l~~n~l 545 (682)
+|.+.+..+..|.++++|++|+|++|.+++..+..|..+++|+.|+|++|++++ ..+..| ..+++|+.|+|++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCC
Confidence 888876666678888888888888888887778888888888888888888875 444555 5688888899999888
Q ss_pred CCCchhhhhcCCC--CCEEEccCccCcccCC
Q 045291 546 NGKMPHQLVELKT--LEVFSVAYNNLSGEIP 574 (682)
Q Consensus 546 ~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~ 574 (682)
+...+..+..++. ++.|++++|++.|.|.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 8777777888776 4788999999887654
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=4.5e-19 Score=167.87 Aligned_cols=153 Identities=24% Similarity=0.310 Sum_probs=117.4
Q ss_pred CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccC
Q 045291 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN 469 (682)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 469 (682)
+.++++++.+. .+|..+ .++++.|++++|++++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56777777776 666543 25778888888888777777777788888888888888777777788888888888888
Q ss_pred CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291 470 NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 470 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 547 (682)
|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|++++ ..+..|..+++|+.|++++|++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcCC
Confidence 88876666667778888888888888887777778888888888888888875 556667778888888888887753
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=171.88 Aligned_cols=157 Identities=19% Similarity=0.188 Sum_probs=141.5
Q ss_pred CCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCC-ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCC
Q 045291 414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIP-QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMP 492 (682)
Q Consensus 414 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 492 (682)
-+.+++++|.++.. |..+ .+.+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 13 ~~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 35899999999865 3333 3567999999999997744 568899999999999999998888899999999999999
Q ss_pred CCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCccc
Q 045291 493 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGE 572 (682)
Q Consensus 493 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~ 572 (682)
+|.+++..+..|..+++|++|+|++|++++ ..+..|..+++|+.|++++|++++..|..+..+++|+.|++++|++.|.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999999999999999999999999997 6789999999999999999999998899999999999999999999998
Q ss_pred CC
Q 045291 573 IP 574 (682)
Q Consensus 573 ~~ 574 (682)
++
T Consensus 169 c~ 170 (220)
T 2v70_A 169 CY 170 (220)
T ss_dssp GG
T ss_pred Cc
Confidence 77
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.9e-19 Score=184.64 Aligned_cols=181 Identities=20% Similarity=0.190 Sum_probs=155.7
Q ss_pred CCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCcccc-CCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCC
Q 045291 414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLS-KCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMP 492 (682)
Q Consensus 414 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 492 (682)
-+.+++++++++... ..+ .+.++.|++++|.+.+..+..+. ++++|++|++++|.+.+..+..|..+++|++|+|+
T Consensus 20 ~~~l~c~~~~l~~iP-~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVP-QSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCC-SSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccC-ccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 368999999988644 333 35689999999999988888887 99999999999999998888889999999999999
Q ss_pred CCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhh---hcCCCCCEEEccCccC
Q 045291 493 NNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQL---VELKTLEVFSVAYNNL 569 (682)
Q Consensus 493 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~l~~n~l 569 (682)
+|++++..+..|..+++|+.|+|++|++++ ..+..|..+++|+.|+|++|+++...+..+ ..+++|+.|++++|++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 999998888899999999999999999986 668899999999999999999997666655 5699999999999999
Q ss_pred cccCCcccccccc--cCcccccCCCCCCCCC
Q 045291 570 SGEIPEWTAQFAT--FNESSYEGNIFLCGLP 598 (682)
Q Consensus 570 ~~~~~~~~~~~~~--l~~~~~~~n~~~c~~~ 598 (682)
+...+..+..+.. ++.+++.+|||.|+|.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 9544444555555 3788999999999985
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=167.16 Aligned_cols=155 Identities=22% Similarity=0.309 Sum_probs=127.0
Q ss_pred CEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCccc-ccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEecc
Q 045291 390 QILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMF-SRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLN 468 (682)
Q Consensus 390 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 468 (682)
+++++++|.+. .+|..+ ...+++|++++|++++..+ ..|..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888887 677644 3457888888888887644 456788888888888888887777788888888888888
Q ss_pred CCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCC
Q 045291 469 NNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGK 548 (682)
Q Consensus 469 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 548 (682)
+|.+.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++ ..|..|..+++|+.|++++|++...
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCcCC
Confidence 888887777788888888888888888888888888888888888888888886 5678888888888888888888754
Q ss_pred c
Q 045291 549 M 549 (682)
Q Consensus 549 ~ 549 (682)
.
T Consensus 169 c 169 (220)
T 2v70_A 169 C 169 (220)
T ss_dssp G
T ss_pred C
Confidence 3
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=4.8e-19 Score=189.99 Aligned_cols=186 Identities=26% Similarity=0.382 Sum_probs=89.0
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEE
Q 045291 339 RLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLA 418 (682)
Q Consensus 339 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~ 418 (682)
+++.|++++|.+++ +|..+ +++|+.|++++|.++ .+| ..+++|++|++++|.++ .+|. +. . +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~-~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP-A--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC-T--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh-c--CCCEEE
Confidence 45566666665553 44433 245556666665555 233 23455555555555555 2444 21 1 555555
Q ss_pred ccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcC
Q 045291 419 LSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEG 498 (682)
Q Consensus 419 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 498 (682)
+++|++++.. . .+++|+.|++++|.+.+ +|. .+++|++|++++|.+++ +|. +. ++|++|+|++|.|+.
T Consensus 127 Ls~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 127 VDNNQLTMLP-E---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCSSCCSCCC-C---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS
T ss_pred CCCCcCCCCC-C---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc
Confidence 5555555422 2 34555555555555543 222 34455555555555543 333 32 455555555555552
Q ss_pred CcchhccCCCCC-------CEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhc
Q 045291 499 PIPVEFCQLDLL-------QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVE 555 (682)
Q Consensus 499 ~~~~~~~~l~~L-------~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 555 (682)
+|. +.. +| +.|+|++|+++. +|..+..+++|+.|++++|++++.+|..+..
T Consensus 195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 195 -LPA-VPV--RNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp -CCC-CC----------CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred -hhh-HHH--hhhcccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 222 322 34 555555555542 3333334555555555555555444444443
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=2e-18 Score=164.63 Aligned_cols=157 Identities=20% Similarity=0.180 Sum_probs=128.4
Q ss_pred CCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCC
Q 045291 414 LNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493 (682)
Q Consensus 414 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 493 (682)
-+.++.++++++.... .+ .++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3455666655554332 22 36788888888888877777788888888888888888766667778889999999999
Q ss_pred CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccC
Q 045291 494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEI 573 (682)
Q Consensus 494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 573 (682)
|++++..+..|..+++|+.|+|++|+++. +|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99988888888999999999999999984 6788899999999999999999877788889999999999999999987
Q ss_pred Cc
Q 045291 574 PE 575 (682)
Q Consensus 574 ~~ 575 (682)
+.
T Consensus 176 ~~ 177 (229)
T 3e6j_A 176 RD 177 (229)
T ss_dssp GG
T ss_pred ch
Confidence 64
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=5.2e-18 Score=168.07 Aligned_cols=171 Identities=26% Similarity=0.371 Sum_probs=122.1
Q ss_pred CCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCE
Q 045291 385 NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEG 464 (682)
Q Consensus 385 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 464 (682)
.+++|++|++++|.+. .++. +..+++|+.|++++|++++..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred hcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence 4455566666665554 3332 2345666666666666665443 55667777777777776642 23677778888
Q ss_pred EeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCc
Q 045291 465 LYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNK 544 (682)
Q Consensus 465 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 544 (682)
|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++ ..+ +..+++|+.|++++|+
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCc
Confidence 88888887743 3577788888888888888765 567888889999999998886 333 8888999999999998
Q ss_pred CCCCchhhhhcCCCCCEEEccCccCcc
Q 045291 545 LNGKMPHQLVELKTLEVFSVAYNNLSG 571 (682)
Q Consensus 545 l~~~~~~~l~~l~~L~~L~l~~n~l~~ 571 (682)
++.. + .+..+++|+.|++++|+++.
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCCC-h-hhccCCCCCEEECcCCcccC
Confidence 8854 4 37888999999999998875
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=3.8e-18 Score=162.67 Aligned_cols=157 Identities=20% Similarity=0.300 Sum_probs=141.2
Q ss_pred CccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEcc
Q 045291 437 NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDIS 516 (682)
Q Consensus 437 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 516 (682)
.-+.++.+++.+. .+|..+ .++|++|++++|.+.+..|..|..+++|++|+|++|+++...+..|..+++|+.|+|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3577999998887 455444 3899999999999998889999999999999999999998888889999999999999
Q ss_pred CCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCC
Q 045291 517 DNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCG 596 (682)
Q Consensus 517 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~ 596 (682)
+|++++ ..+..|..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++...+..+..+.+++.+++.+||+.|+
T Consensus 97 ~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTV-LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCc-cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999996 66778899999999999999999 6788889999999999999999976666688899999999999999999
Q ss_pred CC
Q 045291 597 LP 598 (682)
Q Consensus 597 ~~ 598 (682)
|+
T Consensus 175 c~ 176 (229)
T 3e6j_A 175 CR 176 (229)
T ss_dssp BG
T ss_pred cc
Confidence 86
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=4.4e-18 Score=182.56 Aligned_cols=184 Identities=22% Similarity=0.320 Sum_probs=87.6
Q ss_pred CceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEEC
Q 045291 364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL 443 (682)
Q Consensus 364 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 443 (682)
+++.|++++|.+++ +|..+ .++|++|++++|.+. .+| ..+++|+.|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 45555555555554 23222 244555555555554 444 124555555555555554 222 322 5555555
Q ss_pred CCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC
Q 045291 444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 523 (682)
Q Consensus 444 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 523 (682)
++|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|++|+|++|.+++ +|. |. ++|+.|+|++|+++.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~- 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLES- 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSS-
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCc-
Confidence 5555554 232 34555555555555553 332 34555555555555554 222 33 455555555555542
Q ss_pred cchhhccCCCCC-------cEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCccc
Q 045291 524 LIPSTFSNLKQI-------ESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWT 577 (682)
Q Consensus 524 ~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 577 (682)
+|. +.. +| +.|++++|+|+ .+|..+..+++|+.|++++|++++.+|..+
T Consensus 195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 195 -LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp -CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred -hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 333 322 44 55555555555 234444445555555555555555444433
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=7.6e-18 Score=166.89 Aligned_cols=170 Identities=28% Similarity=0.345 Sum_probs=125.7
Q ss_pred CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEE
Q 045291 362 LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWL 441 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 441 (682)
+++|+.|++++|.+... + .+..+++|++|++++|++. .++. +..+++|+.|++++|++++. ..+..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 55667777777766643 2 3566677777777777776 3443 34677777777777777653 236677888888
Q ss_pred ECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCC
Q 045291 442 LLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNIS 521 (682)
Q Consensus 442 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 521 (682)
++++|.+.+. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 8888887753 4577788888888888888754 467888888888888888887655 788889999999999887
Q ss_pred CCcchhhccCCCCCcEEECCCCcCCC
Q 045291 522 GRLIPSTFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 522 ~~~~~~~~~~l~~L~~L~l~~n~l~~ 547 (682)
+ .+ .+..+++|+.|++++|++..
T Consensus 192 ~--l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 D--LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp B--CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred C--Ch-hhccCCCCCEEECcCCcccC
Confidence 5 33 47888899999999998875
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2.6e-17 Score=178.70 Aligned_cols=189 Identities=25% Similarity=0.304 Sum_probs=113.1
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEc
Q 045291 340 LRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLAL 419 (682)
Q Consensus 340 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l 419 (682)
+..+.+..+.+.+..+. ..+++|+.|++++|.+... + .+..+++|++|+|++|.+. .++. +..+++|+.|++
T Consensus 23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEEC
Confidence 33445555555433332 2256777777777776643 2 4666777777777777776 3443 345677777777
Q ss_pred cCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCC
Q 045291 420 SNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGP 499 (682)
Q Consensus 420 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 499 (682)
++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 77766653 2455666666666666666542 3455666666666666666543 3456666666666666666655
Q ss_pred cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCC
Q 045291 500 IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 500 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 547 (682)
.| +..+++|+.|+|++|++++ + ..+..+++|+.|+|++|++..
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~--l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISD--L-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB--C-GGGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCEEECcCCCCCC--C-hHHccCCCCCEEEccCCcCcC
Confidence 44 5566666666666666653 2 235566666666666666654
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=4e-17 Score=177.29 Aligned_cols=189 Identities=23% Similarity=0.325 Sum_probs=149.7
Q ss_pred CcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEcc
Q 045291 316 LETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLS 395 (682)
Q Consensus 316 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 395 (682)
+..+.+..+.+.+.. .+..++.|+.|++++|.+. .++ .+ ..+++|+.|+|++|.+.+..+ +..+++|+.|+++
T Consensus 23 l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQ-GI-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCC-CCT-TG-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCccccc--chhcCCCCCEEECcCCCCC-CCh-HH-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 334455555555432 2345778899999999887 454 33 348899999999999886654 7889999999999
Q ss_pred CCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCC
Q 045291 396 NNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGK 475 (682)
Q Consensus 396 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 475 (682)
+|.+. .++ .+..+++|+.|++++|++.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 96 ~N~l~-~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIK-DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCC-CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCC-CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 99887 555 234788999999999998864 4577889999999999998865 6788899999999999999876
Q ss_pred chhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCC
Q 045291 476 IPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 522 (682)
Q Consensus 476 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 522 (682)
.| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 66 88899999999999999865 358889999999999998875
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.4e-17 Score=152.31 Aligned_cols=152 Identities=18% Similarity=0.204 Sum_probs=73.0
Q ss_pred CCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCC
Q 045291 384 GNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLE 463 (682)
Q Consensus 384 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 463 (682)
..+++|++|++++|.+. .++ . +..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34566677777777665 555 2 23466666666666644322 2344455555555555555544444455555555
Q ss_pred EEeccCCcCCCCchhhhcCCCCCCeecCCCCc-CcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCC
Q 045291 464 GLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNH-LEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY 542 (682)
Q Consensus 464 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 542 (682)
+|++++|.+.+..+..+..+++|++|++++|. +++. + .+..+++|+.|++++|++++ .+ .+..+++|+.|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeC
Confidence 55555555544444444444444444444444 3322 1 23444444444444444432 11 333344444444444
Q ss_pred CcC
Q 045291 543 NKL 545 (682)
Q Consensus 543 n~l 545 (682)
|++
T Consensus 191 N~i 193 (197)
T 4ezg_A 191 QTI 193 (197)
T ss_dssp C--
T ss_pred ccc
Confidence 433
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=2.5e-17 Score=152.28 Aligned_cols=132 Identities=25% Similarity=0.361 Sum_probs=100.7
Q ss_pred cEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchh-hhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccC
Q 045291 439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPR-WLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 517 (682)
Q Consensus 439 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 517 (682)
++++++++.+. .+|..+. .+|++|++++|.+.+..+. .+..+++|++|+|++|.+++..|..|.++++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777665 3444332 3777777777777755543 477788888888888888877778888888888888888
Q ss_pred CcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 518 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
|++++ ..+..|.++++|+.|++++|++++..|..+..+++|+.|++++|++.|.++
T Consensus 88 N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 88875 566678888888888888888888778888888888888888888888766
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.4e-17 Score=150.42 Aligned_cols=150 Identities=18% Similarity=0.226 Sum_probs=70.7
Q ss_pred CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeec
Q 045291 411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII 490 (682)
Q Consensus 411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 490 (682)
+++|+.|++++|.+.... .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344555555555544221 34444555555555553321 22444455555555555555443444445555555555
Q ss_pred CCCCcCcCCcchhccCCCCCCEEEccCCc-CCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccC
Q 045291 491 MPNNHLEGPIPVEFCQLDLLQILDISDNN-ISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569 (682)
Q Consensus 491 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 569 (682)
+++|.+++..+..+..+++|+.|++++|+ ++. ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 55555554444445555555555555554 432 22 344455555555555555432 1 344455555555555544
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.3e-17 Score=160.65 Aligned_cols=148 Identities=26% Similarity=0.332 Sum_probs=91.4
Q ss_pred CCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeec
Q 045291 411 CVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYII 490 (682)
Q Consensus 411 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 490 (682)
+++|+.|++++|+++... .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+ ++. +.. ++|++|+
T Consensus 40 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEE
T ss_pred cCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEE
Confidence 444444444444444321 33345555555555555553322 5555666666666666553 222 222 6677777
Q ss_pred CCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCc
Q 045291 491 MPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLS 570 (682)
Q Consensus 491 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 570 (682)
+++|++++. ..+..+++|+.|++++|++++ .+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|+++
T Consensus 113 L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 113 LDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 777777654 246777788888888888775 33 577788888888888888765 55777888888888888887
Q ss_pred cc
Q 045291 571 GE 572 (682)
Q Consensus 571 ~~ 572 (682)
+.
T Consensus 186 ~~ 187 (263)
T 1xeu_A 186 NE 187 (263)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=6.6e-17 Score=149.31 Aligned_cols=167 Identities=20% Similarity=0.315 Sum_probs=132.3
Q ss_pred cEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCC
Q 045291 439 KWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518 (682)
Q Consensus 439 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 518 (682)
+.++++++.+.. +|..+ .++|++|++++|.++ .+|..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 678999999884 55544 368999999999998 67789999999999999999999998899999999999999999
Q ss_pred cCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 519 NISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 519 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
++++ ..+..|.++++|+.|+|++|+++...+..+..+++|+.|++++|++.|.+.- ..+..+...... . ..
T Consensus 89 ~l~~-i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l--~~l~~~~~~~~~-~-----~~ 159 (193)
T 2wfh_A 89 RLRC-IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM--QWLSDWVKSEYK-E-----PG 159 (193)
T ss_dssp CCCB-CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG--HHHHHHHHHSSC-C-----CS
T ss_pred ccCE-eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC--HHHHHHHHhccC-C-----CC
Confidence 9986 6778899999999999999999977777899999999999999999987652 222222111110 0 11
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 045291 599 LPICISPATMPEASIGNEQD 618 (682)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~ 618 (682)
...|.+|...++......+.
T Consensus 160 ~~~C~~P~~l~g~~l~~~~~ 179 (193)
T 2wfh_A 160 IARCAGPGEMADKLLLTTPS 179 (193)
T ss_dssp CCBEEESGGGTTCBTTTSCG
T ss_pred CcCcCCchHHCCCCcccCCh
Confidence 23567777777765544443
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.7e-16 Score=146.61 Aligned_cols=174 Identities=21% Similarity=0.236 Sum_probs=110.6
Q ss_pred CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCc-cccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCC
Q 045291 415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQ-SLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPN 493 (682)
Q Consensus 415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 493 (682)
+.+++++|+++... ..+ ..++++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip-~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIP-RDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCc-cCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555554322 222 12666777777766655443 466777777777777777766677777777888888888
Q ss_pred CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchh-hhhcCCCCCEEEccCccCccc
Q 045291 494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPH-QLVELKTLEVFSVAYNNLSGE 572 (682)
Q Consensus 494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~ 572 (682)
|++++..+..|.++++|+.|+|++|++++ ..|..|..+++|+.|++++|++....+- .+.. .++...+.++...|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~ 164 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG 164 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence 88877777777888888888888888876 5677788888888888888888755431 1111 122223445555665
Q ss_pred CCcccccccccCcccccCCCCCCCC
Q 045291 573 IPEWTAQFATFNESSYEGNIFLCGL 597 (682)
Q Consensus 573 ~~~~~~~~~~l~~~~~~~n~~~c~~ 597 (682)
.|.. +......++..+.+.|..
T Consensus 165 ~P~~---l~~~~l~~l~~~~~~C~~ 186 (192)
T 1w8a_A 165 APSK---VRDVQIKDLPHSEFKCSS 186 (192)
T ss_dssp SSTT---TTTSBGGGSCTTTCCCCC
T ss_pred CChH---HcCCChhhCcHhhcCcCC
Confidence 5542 233334455566666643
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=2.8e-17 Score=166.33 Aligned_cols=284 Identities=12% Similarity=0.053 Sum_probs=131.3
Q ss_pred CCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCc--ccCCCCCCCCCCccEEEccCCcCCCCCChhhhhc----
Q 045291 288 QHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIG--GPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDI---- 361 (682)
Q Consensus 288 ~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---- 361 (682)
+.+++.|.++++ +...-...+...+++|+.|+|++|++. ...... ++.++.+.+..+ .+|...+..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc----ccCHHHhcccccc
Confidence 345677777653 111111222222677777777777766 221111 122334444444 334444555
Q ss_pred ----CCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCc----CCCcccccCC
Q 045291 362 ----LPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNN----LQGHMFSRNF 433 (682)
Q Consensus 362 ----l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~----l~~~~~~~~~ 433 (682)
+++|+++++.+ .++.+.+.+|.++++|+++++++|.+. .++..+|.++.++..+....+. ........|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 67777777776 666566667777777777777777665 6666666666655555544421 1122223333
Q ss_pred CCCCcc-EEECCCCcCcc-cCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCC
Q 045291 434 NLTNLK-WLLLEGNRFVG-EIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 511 (682)
Q Consensus 434 ~l~~L~-~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 511 (682)
++..|+ .+.+....... ..........++..+.+.++-...........+++|+.++|++|+++.+.+.+|.++++|+
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 444444 33332211000 0000000122333333333211101111111245555555555555544444555555555
Q ss_pred EEEccCCcCCCCcchhhccCCCCCc-EEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCcccccccccC
Q 045291 512 ILDISDNNISGRLIPSTFSNLKQIE-SLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPEWTAQFATFN 584 (682)
Q Consensus 512 ~L~Ls~n~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 584 (682)
.+++.+| ++. +.+.+|.++++|+ .+++.+ .++.+.+..|.++++|+.+++++|.++..-+..+..+.+++
T Consensus 254 ~l~l~~n-i~~-I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 254 KIKLPHN-LKT-IGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EEECCTT-CCE-ECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCC
T ss_pred EEECCcc-cce-ehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchh
Confidence 5555554 332 3344555555555 555554 44434444555555555555555555443333344344433
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.67 E-value=1.3e-15 Score=157.02 Aligned_cols=266 Identities=12% Similarity=0.103 Sum_probs=199.3
Q ss_pred CCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCCCceE
Q 045291 288 QHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFS 367 (682)
Q Consensus 288 ~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 367 (682)
+..++.+.+... +. .++...|.++ +|+.+.+.++ +..+...+|.++ +|+.+.+.. .+. .++...+..+++|+.
T Consensus 112 ~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKK 184 (401)
T ss_dssp CSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCE
T ss_pred cCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCe
Confidence 356666666653 33 3444446664 6888888765 666767777774 688888875 454 455555556888888
Q ss_pred EEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc
Q 045291 368 FNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR 447 (682)
Q Consensus 368 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 447 (682)
+++.+|.++.+....|. ..+|+.+.+..+ +. .++..+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+.+ .
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 88888888877677776 578888888754 55 778888888888998888864 56566667766 6888888854 4
Q ss_pred CcccCCccccCCCCCCEEeccCCcCC-----CCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCC
Q 045291 448 FVGEIPQSLSKCSSLEGLYLNNNSLS-----GKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISG 522 (682)
Q Consensus 448 ~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 522 (682)
+..+...+|.+|++|+.+++.+|.+. ...+.+|.++++|+.+.|. +.++.+...+|.++++|+.++|..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 56567788889999999998887654 3556788889999999998 4577777788999999999999665 553
Q ss_pred CcchhhccCCCCCcEEECCCCcCCCCchhhhhcCC-CCCEEEccCccCc
Q 045291 523 RLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK-TLEVFSVAYNNLS 570 (682)
Q Consensus 523 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~ 570 (682)
+...+|.++ +|+++++.+|.+....+..|.+++ .++.+++..+.+.
T Consensus 337 -I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 -INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 567889998 899999999988877777777774 7888888887654
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=7.6e-17 Score=157.00 Aligned_cols=167 Identities=23% Similarity=0.296 Sum_probs=93.4
Q ss_pred ceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECC
Q 045291 365 LFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLE 444 (682)
Q Consensus 365 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 444 (682)
+..++++++.+++.. .+..+++|++|++++|.+. .++ . +..+++|+.|++++|++++..+ +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 444444555444322 3444555555555555554 343 1 2245555555555555554433 4555666666666
Q ss_pred CCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCc
Q 045291 445 GNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRL 524 (682)
Q Consensus 445 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 524 (682)
+|.+.+. +. +.. ++|++|++++|.+++. + .+..+++|++|++++|++++.. .+..+++|+.|++++|++++ .
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~-~ 165 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN-T 165 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB-C
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc-h
Confidence 6655542 21 112 5666666666666532 2 3666666666666666666542 46666777777777777764 2
Q ss_pred chhhccCCCCCcEEECCCCcCCCC
Q 045291 525 IPSTFSNLKQIESLDLSYNKLNGK 548 (682)
Q Consensus 525 ~~~~~~~l~~L~~L~l~~n~l~~~ 548 (682)
..+..+++|+.|++++|++...
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEECC
T ss_pred --HHhccCCCCCEEeCCCCcccCC
Confidence 5566677777777777766643
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=9.9e-17 Score=162.25 Aligned_cols=264 Identities=14% Similarity=0.100 Sum_probs=172.8
Q ss_pred CCCCcEEEcCCCCCcccCCCCCCC-CCCccEEEccCCcCC--CCCChhhhhcCCCceEEEecCCcCCcCCCcccCC----
Q 045291 313 NAKLETLFLINDSIGGPFRLPIHP-HRRLRFLDVSNNNFQ--GHMPVEIGDILPSLFSFNISTNALHGSIPSSFGN---- 385 (682)
Q Consensus 313 ~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~n~~~--~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~---- 385 (682)
..+++.|.++++ +.......+.. +++|+.|||++|++. ...+. .++.+..+.+..+. +.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~----~~~~~~~~~~~~~~---I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG----TYPNGKFYIYMANF---VPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS----SSGGGCCEEECTTE---ECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc----cccccccccccccc---cCHHHhcccccc
Confidence 345677777643 11100011111 567888888888775 11111 12223444444443 33456666
Q ss_pred ----CCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCc----CcccCCcccc
Q 045291 386 ----MKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNR----FVGEIPQSLS 457 (682)
Q Consensus 386 ----l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----~~~~~~~~~~ 457 (682)
+++|+++++.+ .+. .++..+|.+|++|+.|++.+|.+..+.+..|.++.++..+....+. .......+|.
T Consensus 96 ~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 88888888888 776 7888888888888888888888887777788777777777665532 2223445666
Q ss_pred CCCCCC-EEeccCCcCCCCchhhhc----CCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCC
Q 045291 458 KCSSLE-GLYLNNNSLSGKIPRWLG----NLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNL 532 (682)
Q Consensus 458 ~l~~L~-~L~l~~n~~~~~~~~~~~----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l 532 (682)
++.+|+ .+.+.... .++..+. ...+++.+.+.++-...........+++|+.++|++|+++. +.+.+|.++
T Consensus 174 ~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~-I~~~aF~~~ 249 (329)
T 3sb4_A 174 EGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATT-IPDFTFAQK 249 (329)
T ss_dssp ESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCE-ECTTTTTTC
T ss_pred cccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcce-ecHhhhhCC
Confidence 777777 55554432 2232221 24566666666542221111112247899999999999985 677899999
Q ss_pred CCCcEEECCCCcCCCCchhhhhcCCCCC-EEEccCccCcccCCcccccccccCcccccCCC
Q 045291 533 KQIESLDLSYNKLNGKMPHQLVELKTLE-VFSVAYNNLSGEIPEWTAQFATFNESSYEGNI 592 (682)
Q Consensus 533 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~l~~~~~~~n~ 592 (682)
++|+++++.+| +..+.+..|.++++|+ .+++.+ .++..-+..+..+..++.+++.+|.
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~ 308 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDK 308 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSC
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCc
Confidence 99999999998 8777778999999999 999999 7776666778888889888886664
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=142.88 Aligned_cols=127 Identities=28% Similarity=0.365 Sum_probs=68.4
Q ss_pred CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCC
Q 045291 415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494 (682)
Q Consensus 415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 494 (682)
+.+++++|+++... ..+ .++|++|++++|.+. .+|..|.++++|++|++++|.+++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLP-KGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCC-SCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCC-CCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555332 211 235555555555554 34455555555555555555555555555555555555555555
Q ss_pred cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
.+++..+..|.++++|+.|+|++|+++. ..+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCee
Confidence 5555555555555555555555555553 33444555555555555555554
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=3.6e-19 Score=192.19 Aligned_cols=202 Identities=17% Similarity=0.155 Sum_probs=95.9
Q ss_pred CCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCc-------------CCcCCCcccCCCCCCCEEE-ccCCcCCC
Q 045291 336 PHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNA-------------LHGSIPSSFGNMKFLQILD-LSNNHLTG 401 (682)
Q Consensus 336 ~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-------------i~~~~~~~~~~l~~L~~L~-l~~n~~~~ 401 (682)
..++|+.|++++|.+. .+|..+.. +++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred cCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 3556666666666665 56666554 5666666665443 2222333333344444443 3333221
Q ss_pred cCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhc
Q 045291 402 EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLG 481 (682)
Q Consensus 402 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 481 (682)
.+ +.+.+++|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+.
T Consensus 424 ~L-----------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 DL-----------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp HH-----------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred hh-----------hhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 11 111122222221111 124555555555553 233 555555555555555555 4444555
Q ss_pred CCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcc-hhhccCCCCCcEEECCCCcCCCCchh---hhhcCC
Q 045291 482 NLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLI-PSTFSNLKQIESLDLSYNKLNGKMPH---QLVELK 557 (682)
Q Consensus 482 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~ 557 (682)
.+++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++ .. |..+..+++|+.|++++|++++.+|. .+..++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~-~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp 560 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 560 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCS-SSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCC-CCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCc
Confidence 55555555555555554 23 45555555555555555554 22 45555555555555555555543331 122345
Q ss_pred CCCEEE
Q 045291 558 TLEVFS 563 (682)
Q Consensus 558 ~L~~L~ 563 (682)
+|+.|+
T Consensus 561 ~L~~L~ 566 (567)
T 1dce_A 561 SVSSIL 566 (567)
T ss_dssp TCSEEE
T ss_pred ccCccC
Confidence 555554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.4e-16 Score=139.65 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=84.7
Q ss_pred CCccEEECCCCcCc-ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEE
Q 045291 436 TNLKWLLLEGNRFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514 (682)
Q Consensus 436 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 514 (682)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666655 34455556666666666666666543 4556666666666666666665666666667777777
Q ss_pred ccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch---hhhhcCCCCCEEEccCccCc
Q 045291 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP---HQLVELKTLEVFSVAYNNLS 570 (682)
Q Consensus 515 Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l~ 570 (682)
+++|++++...+..+..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777641122566677777777777777765544 45666777777777777665
No 126
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=9.3e-15 Score=151.70 Aligned_cols=237 Identities=15% Similarity=0.103 Sum_probs=135.1
Q ss_pred ccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcCC
Q 045291 284 FLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDILP 363 (682)
Q Consensus 284 ~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~ 363 (682)
.|..+++|+.+.+..+.. .+++..|.++.+|+.+.+..+ +..+...+|..+..|+.+.+..+... +....+. ..
T Consensus 157 aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~-~~ 230 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALS-KT 230 (394)
T ss_dssp TTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTT-TC
T ss_pred hhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcc-cC
Confidence 355666677777655432 344445667777777776554 44455566666777776666554321 2222222 45
Q ss_pred CceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEEC
Q 045291 364 SLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLL 443 (682)
Q Consensus 364 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 443 (682)
+|+.+.+... ++......|.++..++.+.+..+.. .+....|..+..++.+......+. ...|..+.+|+.+.+
T Consensus 231 ~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 231 GVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---ccccccccccccccc
Confidence 6777766543 2334445666777777777765532 445555556667776666554322 234556666777766
Q ss_pred CCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCC
Q 045291 444 EGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGR 523 (682)
Q Consensus 444 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 523 (682)
.++ +..+...+|.++++|+.+++.++ ++.....+|.++.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-- 378 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-- 378 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG--
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE--
Confidence 554 44445566666777777766543 44344456666666666666554 55455566666666666666544 22
Q ss_pred cchhhccCCCCCcEE
Q 045291 524 LIPSTFSNLKQIESL 538 (682)
Q Consensus 524 ~~~~~~~~l~~L~~L 538 (682)
....+|.++++|+.+
T Consensus 379 ~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 QYRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGGBCTTCEEEEE
T ss_pred EhhheecCCCCCcEE
Confidence 234456666666543
No 127
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=3.8e-15 Score=153.60 Aligned_cols=248 Identities=11% Similarity=0.127 Sum_probs=203.5
Q ss_pred cccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCCCCccEEEccCCcCCCCCChhhhhcC
Q 045291 283 KFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPHRRLRFLDVSNNNFQGHMPVEIGDIL 362 (682)
Q Consensus 283 ~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l 362 (682)
..|..+ +|+.+.+..+ +. .++...|.++ +|+.+.+.+ .+..+...+|.++.+|+.+++.+|.++ .++...+. +
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~-~ 202 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFV-Y 202 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTT-T
T ss_pred hhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEe-e
Confidence 344454 6899998776 44 4555556664 699999986 777788889999999999999999987 67776666 6
Q ss_pred CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEE
Q 045291 363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLL 442 (682)
Q Consensus 363 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 442 (682)
.+|+.+.+..+ ++.+...+|.++++|+.+++..+ +. .++..+|.+ .+|+.+.+ .+.++.+...+|.++++|+.++
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEE
Confidence 89999999855 77677789999999999999875 54 788888876 79999999 4567777788999999999999
Q ss_pred CCCCcCc-----ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccC
Q 045291 443 LEGNRFV-----GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 517 (682)
Q Consensus 443 l~~n~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 517 (682)
+.++.+. .+.+.+|.+|++|+.+++.+ .+......+|.++++|+.+.|..+ ++.+...+|.++ +|+.+++++
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC
Confidence 9887764 46678999999999999994 577677788999999999999665 776778899999 999999999
Q ss_pred CcCCCCcchhhccCCC-CCcEEECCCCcCC
Q 045291 518 NNISGRLIPSTFSNLK-QIESLDLSYNKLN 546 (682)
Q Consensus 518 n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~ 546 (682)
|.+.. ..+..|.+++ +++.|++..+.+.
T Consensus 355 n~~~~-l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 355 TTPPQ-VFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SSCCB-CCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCcc-cccccccCCCCCccEEEeCHHHHH
Confidence 98875 5678888885 7889998877544
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=7.9e-16 Score=135.96 Aligned_cols=128 Identities=22% Similarity=0.229 Sum_probs=80.9
Q ss_pred CCccEEECCCCcCc-ccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEE
Q 045291 436 TNLKWLLLEGNRFV-GEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514 (682)
Q Consensus 436 ~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 514 (682)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 44555556666666666666666544 4556666666666666666655666666667777777
Q ss_pred ccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch---hhhhcCCCCCEEEcc
Q 045291 515 ISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP---HQLVELKTLEVFSVA 565 (682)
Q Consensus 515 Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~ 565 (682)
+++|++++...+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777776641123566677777777777777765544 456667777777665
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=9.2e-17 Score=179.08 Aligned_cols=180 Identities=25% Similarity=0.331 Sum_probs=84.2
Q ss_pred CCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccC
Q 045291 379 IPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSK 458 (682)
Q Consensus 379 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 458 (682)
.+..|..++.|++|+|++|.+. .++..++ .+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..+.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3455666666666666666665 5665555 5666666666666666 44555566666666666666666 44666666
Q ss_pred CCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCC-CCEEEccCCcCCCCcchhhccCCCCCcE
Q 045291 459 CSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDL-LQILDISDNNISGRLIPSTFSNLKQIES 537 (682)
Q Consensus 459 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~~~~~~~~~~~~~l~~L~~ 537 (682)
+++|++|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++ .+| ..|+.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~-~~p------~~l~~ 363 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI-PLP------HERRF 363 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC-CCC------CC---
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC-cCc------cccce
Confidence 666666666666665 44555666666666666666666665555533211 1235566666654 333 23444
Q ss_pred EECCCC--------cCCCCchhhhhcCCCCCEEEccCccCc
Q 045291 538 LDLSYN--------KLNGKMPHQLVELKTLEVFSVAYNNLS 570 (682)
Q Consensus 538 L~l~~n--------~l~~~~~~~l~~l~~L~~L~l~~n~l~ 570 (682)
|++++| .+.+..+..+..+..+....+++|-+.
T Consensus 364 l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 364 IEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp --------------------------------------CCC
T ss_pred eEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 555555 233333333444555566666666664
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=3.4e-15 Score=136.16 Aligned_cols=134 Identities=22% Similarity=0.256 Sum_probs=104.4
Q ss_pred ccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccC
Q 045291 438 LKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISD 517 (682)
Q Consensus 438 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 517 (682)
.+.++++++.+.. +|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3566666666653 33322 35778888888888766666677888888888888888877777788888899999999
Q ss_pred CcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 518 NNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 518 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
|++++ ..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus 86 N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQS-LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccc-cCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 98886 5666788888999999999998877666678889999999999999887764
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.7e-15 Score=136.84 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=99.8
Q ss_pred CCCCCEEEccCCcCC-CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCee
Q 045291 411 CVNLNSLALSNNNLQ-GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489 (682)
Q Consensus 411 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 489 (682)
.++|++|++++|++. +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777766 44555566677778888877777654 667777888888888888876677777778888888
Q ss_pred cCCCCcCcCCcc-hhccCCCCCCEEEccCCcCCCCcch---hhccCCCCCcEEECCCCcCCC
Q 045291 490 IMPNNHLEGPIP-VEFCQLDLLQILDISDNNISGRLIP---STFSNLKQIESLDLSYNKLNG 547 (682)
Q Consensus 490 ~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~ 547 (682)
++++|.+++... ..+..+++|+.|++++|++++ ..+ ..+..+++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCCCChhh
Confidence 888888876533 677888888888888888875 333 477888888888888888773
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=1.2e-17 Score=180.37 Aligned_cols=109 Identities=24% Similarity=0.328 Sum_probs=100.2
Q ss_pred CCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEEC
Q 045291 461 SLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL 540 (682)
Q Consensus 461 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l 540 (682)
.|+.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++ +| .++.+++|+.|+|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence 58999999999985 565 999999999999999999 678899999999999999999986 56 8999999999999
Q ss_pred CCCcCCCCc-hhhhhcCCCCCEEEccCccCcccCCc
Q 045291 541 SYNKLNGKM-PHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 541 ~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
++|++++.. |..+..+++|+.|++++|++++..|.
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 999999887 99999999999999999999976664
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.9e-15 Score=131.46 Aligned_cols=129 Identities=20% Similarity=0.241 Sum_probs=102.8
Q ss_pred CCCCCEEEccCCcCC-CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCee
Q 045291 411 CVNLNSLALSNNNLQ-GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYI 489 (682)
Q Consensus 411 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 489 (682)
.++|+.|++++|.++ +..+..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777888887776 55666677788888888888888765 677888889999999998887688888888899999
Q ss_pred cCCCCcCcCC-cchhccCCCCCCEEEccCCcCCCCcch---hhccCCCCCcEEECCC
Q 045291 490 IMPNNHLEGP-IPVEFCQLDLLQILDISDNNISGRLIP---STFSNLKQIESLDLSY 542 (682)
Q Consensus 490 ~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~---~~~~~l~~L~~L~l~~ 542 (682)
++++|.+++. .+..+..+++|+.|++++|++++ ..+ ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 9999988864 34778888999999999999875 333 4788889999998864
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=9e-14 Score=144.24 Aligned_cols=332 Identities=14% Similarity=0.079 Sum_probs=158.7
Q ss_pred ccCCCCCCCCCCCceeecCCCccccccchhHHHhhcCCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcc
Q 045291 98 VLRGQGFPSFKSLEHLHMSFAPIALNTSFLQIIGESMPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRG 177 (682)
Q Consensus 98 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~~l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~ 177 (682)
+... +|.+|++|+.+.+..+ . ..+....+.+|++|+.+++.++ +.. +...+|.++.+|+.+.+..+ +..
T Consensus 62 Ig~~-AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~----I~~~aF~~c~~L~~i~~p~~-l~~ 130 (394)
T 4fs7_A 62 IGYA-AFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKM----IGRCTFSGCYALKSILLPLM-LKS 130 (394)
T ss_dssp ECTT-TTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCE----ECTTTTTTCTTCCCCCCCTT-CCE
T ss_pred hHHH-HhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceE----ccchhhcccccchhhcccCc-eee
Confidence 4433 5777777777777542 1 3344444444677777777543 333 55556677777776655433 333
Q ss_pred cCchhhcCCCCCCEEeccCCccccccCCchhcccCCCcEEecCCCcCccccCccccccCCCCcEEEccCCcccccccccC
Q 045291 178 SLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTSIEMLILSDNHFQIPISLEPLFNHSRLKIFYADNNELNAEITQSH 257 (682)
Q Consensus 178 ~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 257 (682)
....+|.++..++........ .+...+|..+.+|+.+.+.++.. .++...+..+.+|+.+.+..+-
T Consensus 131 i~~~aF~~~~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~~--------- 196 (394)
T 4fs7_A 131 IGVEAFKGCDFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRNL--------- 196 (394)
T ss_dssp ECTTTTTTCCCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTTC---------
T ss_pred ecceeeecccccccccCcccc---ccchhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCCc---------
Confidence 444555555433333222222 22244566666666666654432 2333345555555555443321
Q ss_pred CCCCCcccccceeccccCCCCCCCCcccccCCCCCEEEcCCCCCcCcCchHHHhcCCCCcEEEcCCCCCcccCCCCCCCC
Q 045291 258 SLTAPNFQLNRLLLSSSYGDGFIFPKFLYHQHDLEFVDLSHIKMNGEFPTWLLENNAKLETLFLINDSIGGPFRLPIHPH 337 (682)
Q Consensus 258 ~~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 337 (682)
. .+++..+..+..|+.+.+..+...- ...+...
T Consensus 197 --------------------------------------------~-~I~~~~F~~~~~L~~i~~~~~~~~i--~~~~~~~ 229 (394)
T 4fs7_A 197 --------------------------------------------K-IIRDYCFAECILLENMEFPNSLYYL--GDFALSK 229 (394)
T ss_dssp --------------------------------------------C-EECTTTTTTCTTCCBCCCCTTCCEE--CTTTTTT
T ss_pred --------------------------------------------e-EeCchhhccccccceeecCCCceEe--ehhhccc
Confidence 1 1222223333333333333221110 1111122
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEE
Q 045291 338 RRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSL 417 (682)
Q Consensus 338 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 417 (682)
..|+.+.+... ++ .+....+..+..++.+.+..+... .....|..+..++.+....+. ++...|.++.+|+.+
T Consensus 230 ~~l~~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i 302 (394)
T 4fs7_A 230 TGVKNIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEV 302 (394)
T ss_dssp CCCCEEEECTT-CC-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEE
T ss_pred CCCceEEECCC-ce-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----ecccccccccccccc
Confidence 34444444322 11 222222233555555555444322 333455555555555554332 333444455566666
Q ss_pred EccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCc
Q 045291 418 ALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLE 497 (682)
Q Consensus 418 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 497 (682)
.+..+ +..+...+|.++.+|+.+++.++ +..+...+|.+|++|+.+++..+ +......+|.++++|+.+++..+ ++
T Consensus 303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~ 378 (394)
T 4fs7_A 303 KLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE 378 (394)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG
T ss_pred ccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE
Confidence 55433 44444455555666666666533 44344556666666666666554 44344455666666666666443 22
Q ss_pred CCcchhccCCCCCCEE
Q 045291 498 GPIPVEFCQLDLLQIL 513 (682)
Q Consensus 498 ~~~~~~~~~l~~L~~L 513 (682)
....+|.++++|+.+
T Consensus 379 -~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 379 -QYRYDFEDTTKFKWI 393 (394)
T ss_dssp -GGGGGBCTTCEEEEE
T ss_pred -EhhheecCCCCCcEE
Confidence 223456666655543
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=3.5e-14 Score=129.38 Aligned_cols=132 Identities=19% Similarity=0.227 Sum_probs=96.0
Q ss_pred CEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCC
Q 045291 415 NSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNN 494 (682)
Q Consensus 415 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 494 (682)
+.+++++++++..... ..++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4555555555543321 1356777777777777655666677777888888888777666666777888888888888
Q ss_pred cCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch
Q 045291 495 HLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP 550 (682)
Q Consensus 495 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 550 (682)
.+++..+..|..+++|+.|++++|++++ ..+..+..+++|++|++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8887777777888888888888888875 555667888888888888888886554
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1.7e-15 Score=168.87 Aligned_cols=188 Identities=23% Similarity=0.290 Sum_probs=94.6
Q ss_pred CCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCC--------cCchhhhhCCCCCCEEEccCCcCCCcccccCCC
Q 045291 363 PSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTG--------EIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFN 434 (682)
Q Consensus 363 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~--------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 434 (682)
+.++.|++.+|.+... +.. .++.++|+.|.+.+ .++...+..+++|+.|++++|.+... +..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQA-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNI-SANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCC-CGGGGG
T ss_pred CccceEEeeCCCCCcc-hhh-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCC-ChhhcC
Confidence 4677788888877653 222 23333444433321 12334444677777777777777643 333446
Q ss_pred CCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEE
Q 045291 435 LTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILD 514 (682)
Q Consensus 435 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 514 (682)
+++|++|+|++|.+. .+|..|.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|+.|+
T Consensus 246 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEe
Confidence 777777777777777 56677777777777777777777 56777777777777777777776 4455577777777777
Q ss_pred ccCCcCCCCcchhhccCCC-CCcEEECCCCcCCCCchhhhhcCCCCCEEEccCc
Q 045291 515 ISDNNISGRLIPSTFSNLK-QIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYN 567 (682)
Q Consensus 515 Ls~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 567 (682)
|++|++++ .+|..+..+. .+..+++++|.+++.+|. .|+.|+++.|
T Consensus 323 L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 323 VEGNPLEK-QFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CTTSCCCS-HHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCCccCC-CChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 77777775 5565554432 122366777777766654 3455566665
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.2e-14 Score=130.54 Aligned_cols=131 Identities=16% Similarity=0.145 Sum_probs=89.0
Q ss_pred CCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEE
Q 045291 434 NLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQIL 513 (682)
Q Consensus 434 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 513 (682)
.+.+|+.|++++|.+... +......++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..|..+++|+.|
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 456666777777666633 33222233777777777777643 456677777777777777776655556777788888
Q ss_pred EccCCcCCCCcchh--hccCCCCCcEEECCCCcCCCCchh----hhhcCCCCCEEEccCccCc
Q 045291 514 DISDNNISGRLIPS--TFSNLKQIESLDLSYNKLNGKMPH----QLVELKTLEVFSVAYNNLS 570 (682)
Q Consensus 514 ~Ls~n~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~ 570 (682)
++++|+++. .|. .+..+++|+.|++++|++.. .|. .+..+++|+.||+++|...
T Consensus 94 ~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSLVE--LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCCCC--GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcCCc--chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888887764 444 67777888888888888773 344 3777888888888888765
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=3.3e-14 Score=128.19 Aligned_cols=110 Identities=23% Similarity=0.269 Sum_probs=94.1
Q ss_pred CCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECC
Q 045291 462 LEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLS 541 (682)
Q Consensus 462 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~ 541 (682)
.+.+++++|.++ .+|..+ .++|++|+|++|.+++..+..|..+++|+.|+|++|++++ ..+..|..+++|+.|+|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECC
Confidence 467888888887 455443 3788899999999998888889999999999999999986 677788999999999999
Q ss_pred CCcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 542 YNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 542 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
+|++++..+..+..+++|+.|++++|++.|.+++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 9999988777899999999999999999988764
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=7.4e-14 Score=126.96 Aligned_cols=133 Identities=22% Similarity=0.247 Sum_probs=63.7
Q ss_pred cCCCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCC
Q 045291 383 FGNMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSL 462 (682)
Q Consensus 383 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 462 (682)
+..+++|++|++++|.+. .++. +....++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 445556666666666665 4432 222233556666665555543 344455555555555555554333334455555
Q ss_pred CEEeccCCcCCCCchh--hhcCCCCCCeecCCCCcCcCCcch---hccCCCCCCEEEccCCcC
Q 045291 463 EGLYLNNNSLSGKIPR--WLGNLTRLQYIIMPNNHLEGPIPV---EFCQLDLLQILDISDNNI 520 (682)
Q Consensus 463 ~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~~ 520 (682)
++|++++|.+. .+|. .+..+++|++|++++|.++...+. .+..+++|+.|++++|.+
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555555553 2332 344444444444444444422211 234444444444444443
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.47 E-value=1e-13 Score=125.32 Aligned_cols=109 Identities=25% Similarity=0.265 Sum_probs=90.2
Q ss_pred CEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCC
Q 045291 463 EGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSY 542 (682)
Q Consensus 463 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 542 (682)
+.+++++|.+. .+|..+. ++|++|+|++|.+++..|..|..+++|+.|+|++|++++ ..+..|..+++|+.|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCC
Confidence 57788888876 5554443 788888888888888888888899999999999999986 5666788899999999999
Q ss_pred CcCCCCchhhhhcCCCCCEEEccCccCcccCCc
Q 045291 543 NKLNGKMPHQLVELKTLEVFSVAYNNLSGEIPE 575 (682)
Q Consensus 543 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 575 (682)
|++++..+..+..+++|+.|++++|++.|.++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 999977777788899999999999999987664
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1e-15 Score=142.38 Aligned_cols=111 Identities=26% Similarity=0.254 Sum_probs=52.6
Q ss_pred CCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCC
Q 045291 432 NFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQ 511 (682)
Q Consensus 432 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 511 (682)
+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..+++|++|++++|++++. | .+..+++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~ 118 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNLR 118 (198)
T ss_dssp HHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSS
T ss_pred HhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCCC
Confidence 3344445555555544443 23 4444455555555555554 3344444445555555555555432 2 344455555
Q ss_pred EEEccCCcCCCCcch-hhccCCCCCcEEECCCCcCCCC
Q 045291 512 ILDISDNNISGRLIP-STFSNLKQIESLDLSYNKLNGK 548 (682)
Q Consensus 512 ~L~Ls~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~ 548 (682)
.|++++|++++ ..+ ..+..+++|+.|++++|++.+.
T Consensus 119 ~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 119 VLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp EEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred EEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccc
Confidence 55555555543 111 2445555555555555555433
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=3.1e-15 Score=139.06 Aligned_cols=145 Identities=23% Similarity=0.246 Sum_probs=116.1
Q ss_pred CccEEECCCCcCcccCC------ccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCC
Q 045291 437 NLKWLLLEGNRFVGEIP------QSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLL 510 (682)
Q Consensus 437 ~L~~L~l~~n~~~~~~~------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 510 (682)
.++.++++++.+.+..| ..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 34444444444444433 488899999999999999986 66 7899999999999999999 456677778999
Q ss_pred CEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch-hhhhcCCCCCEEEccCccCcccCCcc----------ccc
Q 045291 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP-HQLVELKTLEVFSVAYNNLSGEIPEW----------TAQ 579 (682)
Q Consensus 511 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~----------~~~ 579 (682)
+.|++++|++++ +| .+..+++|+.|++++|+++...+ ..+..+++|+.|++++|++.+.+|.. +..
T Consensus 96 ~~L~L~~N~l~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1ds9_A 96 EELWISYNQIAS--LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR 172 (198)
T ss_dssp SEEEEEEEECCC--HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred CEEECcCCcCCc--CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence 999999999986 45 68889999999999999996543 57889999999999999999877652 445
Q ss_pred ccccCccc
Q 045291 580 FATFNESS 587 (682)
Q Consensus 580 ~~~l~~~~ 587 (682)
++.++.++
T Consensus 173 l~~L~~Ld 180 (198)
T 1ds9_A 173 LPNLKKLD 180 (198)
T ss_dssp CSSCSEEC
T ss_pred CCCcEEEC
Confidence 56666553
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=8e-13 Score=119.08 Aligned_cols=110 Identities=22% Similarity=0.227 Sum_probs=98.2
Q ss_pred CCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEc
Q 045291 485 RLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSV 564 (682)
Q Consensus 485 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 564 (682)
+.+.+++++|.++.+ |..+ .++|+.|+|++|++++ ..+..|..+++|+.|+|++|++++..+..|..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~i-p~~~--~~~l~~L~L~~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-PTGI--PTTTQVLYLYDNQITK-LEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCcc-CccC--CCCCcEEEcCCCcCCc-cChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 457899999999964 4444 3789999999999997 67889999999999999999999888888899999999999
Q ss_pred cCccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 565 AYNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 565 ~~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
++|+++...+..+..+.+++.+++.+|++.|+|+
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999997777678889999999999999999985
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=3e-11 Score=125.17 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=71.6
Q ss_pred CchhhhhCCCCCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcC
Q 045291 403 IPEYLAVGCVNLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGN 482 (682)
Q Consensus 403 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 482 (682)
+...+|.++..|+.+.+..+ +..+....|.++++|+.+.+.. .+..+...+|.+|.+|+++++..+ ++.....+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 33444555555555555433 2223344555566666666643 334344556666666666666543 43344456666
Q ss_pred CCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcC
Q 045291 483 LTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKL 545 (682)
Q Consensus 483 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 545 (682)
+.+|+.+.|..+ ++.+...+|.++++|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH----HHTCBCCCCC----------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCCCCE
Confidence 777777776543 55555667777777777777776532 24566667777777665544
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.3e-12 Score=116.39 Aligned_cols=109 Identities=19% Similarity=0.204 Sum_probs=96.1
Q ss_pred CCeecCCCCcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEcc
Q 045291 486 LQYIIMPNNHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVA 565 (682)
Q Consensus 486 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 565 (682)
-+.+++++|.++. +|..+. ++|+.|+|++|++++ ..+..|.++++|+.|+|++|++++..+..|..+++|+.|+++
T Consensus 14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITK-LEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccc-cCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 3689999999984 454443 789999999999997 678899999999999999999998777778899999999999
Q ss_pred CccCcccCCcccccccccCcccccCCCCCCCCC
Q 045291 566 YNNLSGEIPEWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 566 ~n~l~~~~~~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
+|+++...+..+..+++++.+++.+|++.|+|+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999997666668889999999999999999875
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.35 E-value=1.2e-12 Score=133.38 Aligned_cols=102 Identities=25% Similarity=0.253 Sum_probs=47.0
Q ss_pred EECCCC-cCcccCCccccCCCCCCEEeccC-CcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhccCCCCCCEEEccCC
Q 045291 441 LLLEGN-RFVGEIPQSLSKCSSLEGLYLNN-NSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEFCQLDLLQILDISDN 518 (682)
Q Consensus 441 L~l~~n-~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 518 (682)
++.+++ .+.. +|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 4442 333 44445555555543 4444444444444455555555555544444444444445555555555
Q ss_pred cCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291 519 NISGRLIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 519 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
++++ ..+..|..++ |+.|+|.+|++.
T Consensus 91 ~l~~-~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALES-LSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSC-CCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccce-eCHHHcccCC-ceEEEeeCCCcc
Confidence 4443 3333333333 444444444444
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=7e-11 Score=122.42 Aligned_cols=137 Identities=12% Similarity=0.153 Sum_probs=92.5
Q ss_pred CCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCCCCCeecCCCCcCcCCcchhc
Q 045291 425 QGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLTRLQYIIMPNNHLEGPIPVEF 504 (682)
Q Consensus 425 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 504 (682)
..+...+|.++..|+.+.+.++.. .+...+|.++++|+.+.+.. .+......+|.++.+|+.++|..+ ++.+...+|
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred eEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence 334456777888888888876543 35667888888888888864 455455677888888888888754 665667788
Q ss_pred cCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccC
Q 045291 505 CQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNL 569 (682)
Q Consensus 505 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 569 (682)
.++.+|+.+.+..+ ++. +...+|.++++|+++++.++... ...+.....|+.+.+..+.+
T Consensus 331 ~~C~~L~~i~ip~s-v~~-I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTK-IPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEECTT-CCB-CCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred hCCCCCCEEEECcc-cCE-EhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 88888998888654 543 55678888888999888887543 24456667788887776654
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=1.5e-13 Score=140.26 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=44.0
Q ss_pred CCCCEEeccCCcCCC----CchhhhcCCCCCCeecCCCCcCcCCc----chhccCCCCCCEEEccCCcCCCC---cchhh
Q 045291 460 SSLEGLYLNNNSLSG----KIPRWLGNLTRLQYIIMPNNHLEGPI----PVEFCQLDLLQILDISDNNISGR---LIPST 528 (682)
Q Consensus 460 ~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~Ls~n~~~~~---~~~~~ 528 (682)
++|++|++++|.+++ .++..+..+++|++|+|++|.+++.. +..+...++|+.|+|++|.++.. .++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 444444444444432 12223344455555555555554321 23344455566666666665421 11223
Q ss_pred ccCCCCCcEEECCCCcCCCCchhhh
Q 045291 529 FSNLKQIESLDLSYNKLNGKMPHQL 553 (682)
Q Consensus 529 ~~~l~~L~~L~l~~n~l~~~~~~~l 553 (682)
+...++|++|+|++|.|+..-...+
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3444566666666666654333333
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=4.5e-13 Score=136.78 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=100.8
Q ss_pred CCCceEEEecCCcCCcCCCcc----cC-CCCCCCEEEccCCcCCCcCchhhhhCCCCCCEEEccCCcCCCcccccC----
Q 045291 362 LPSLFSFNISTNALHGSIPSS----FG-NMKFLQILDLSNNHLTGEIPEYLAVGCVNLNSLALSNNNLQGHMFSRN---- 432 (682)
Q Consensus 362 l~~L~~L~l~~n~i~~~~~~~----~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~---- 432 (682)
++.|+.|++++|.++...... +. ..++|++|++++|.+.......+...+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 457778888888776432222 22 235777888888777543333444445677777887777765433332
Q ss_pred -CCCCCccEEECCCCcCccc----CCccccCCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCcCcCCc---
Q 045291 433 -FNLTNLKWLLLEGNRFVGE----IPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHLEGPI--- 500 (682)
Q Consensus 433 -~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~--- 500 (682)
...++|++|++++|.++.. ++..+...++|++|++++|.+.+. ++..+...++|++|+|++|.|++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356777777777777542 334446677777777777777542 2445566677777777777776432
Q ss_pred -chhccCCCCCCEEEccCCcCCC
Q 045291 501 -PVEFCQLDLLQILDISDNNISG 522 (682)
Q Consensus 501 -~~~~~~l~~L~~L~Ls~n~~~~ 522 (682)
+..+...++|++|+|++|.|+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 2334455777777887777764
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=6.1e-11 Score=120.73 Aligned_cols=132 Identities=19% Similarity=0.262 Sum_probs=108.8
Q ss_pred CEEeccCC-cCCCCchhhhcCCCCCCeecCCC-CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEEC
Q 045291 463 EGLYLNNN-SLSGKIPRWLGNLTRLQYIIMPN-NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDL 540 (682)
Q Consensus 463 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l 540 (682)
..++++++ .++ .+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|++++ ..+..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeC
Confidence 45788888 887 5777 99999999999996 99998888999999999999999999997 77889999999999999
Q ss_pred CCCcCCCCchhhhhcCCCCCEEEccCccCcccCC-cccccccccCcccccCCCCCCCCC
Q 045291 541 SYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP-EWTAQFATFNESSYEGNIFLCGLP 598 (682)
Q Consensus 541 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~l~~~~~~~n~~~c~~~ 598 (682)
++|+|++..+..+..++ |+.|++.+|++.|.+. .|+..+.......+..+.+.|..+
T Consensus 88 ~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp CSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred CCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 99999977777776666 9999999999998776 333333333344455566777654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.12 E-value=5.8e-09 Score=107.45 Aligned_cols=145 Identities=12% Similarity=0.140 Sum_probs=86.6
Q ss_pred CCCCCCCccEEEccCCcCCCCCChhhhhcCCCceEEEecCCcCCcCCCcccCCCCCCCEEEccCCcCCCcCchhhhhCCC
Q 045291 333 PIHPHRRLRFLDVSNNNFQGHMPVEIGDILPSLFSFNISTNALHGSIPSSFGNMKFLQILDLSNNHLTGEIPEYLAVGCV 412 (682)
Q Consensus 333 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 412 (682)
.+..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +. .++..+|.++.
T Consensus 212 ~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~ 286 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS 286 (379)
T ss_dssp TTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT
T ss_pred ccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccc
Confidence 3444455555555433 22 223333333566666666554 44444556667777777776543 33 56666666777
Q ss_pred CCCEEEccCCcCCCcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccCCcCCCCchhhhcCCC
Q 045291 413 NLNSLALSNNNLQGHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNNSLSGKIPRWLGNLT 484 (682)
Q Consensus 413 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 484 (682)
+|+.+.+.++.++.+...+|.++.+|+.+.+..+ +..+...+|.+|++|+++.+..+ ++..-..+|.++.
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 7777777766666666667777777777777654 44455667777777777777654 4434445565553
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.11 E-value=4.9e-09 Score=108.00 Aligned_cols=79 Identities=8% Similarity=0.084 Sum_probs=47.8
Q ss_pred CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCcccCchhhcCCCCCCEEeccCCccccccCCchhcccCC
Q 045291 134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGSLPWCLANMTSLRILDVSFNQLTGSISSSPLVHLTS 213 (682)
Q Consensus 134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~l~~ 213 (682)
..+|+.+.+... +.. |...+|.+|.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +. .+...+|.. .+
T Consensus 45 ~~~i~~v~ip~~-vt~----Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~~ 114 (379)
T 4h09_A 45 RDRISEVRVNSG-ITS----IGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-TD 114 (379)
T ss_dssp GGGCSEEEECTT-EEE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-CC
T ss_pred ccCCEEEEeCCC-ccC----hHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-CC
Confidence 567777777542 333 66677888888888888643 554555667766 5666666543 32 343444444 36
Q ss_pred CcEEecCCC
Q 045291 214 IEMLILSDN 222 (682)
Q Consensus 214 L~~L~L~~n 222 (682)
|+.+.+..+
T Consensus 115 L~~i~lp~~ 123 (379)
T 4h09_A 115 LDDFEFPGA 123 (379)
T ss_dssp CSEEECCTT
T ss_pred cccccCCCc
Confidence 777766544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=7.6e-09 Score=104.41 Aligned_cols=84 Identities=18% Similarity=0.301 Sum_probs=45.1
Q ss_pred CCCCCeecCCCCcCcCCcchhc---cCCCCCCEEEccCCcCCCCc---chhhccCCCCCcEEECCCCcCCCCchhhhhc-
Q 045291 483 LTRLQYIIMPNNHLEGPIPVEF---CQLDLLQILDISDNNISGRL---IPSTFSNLKQIESLDLSYNKLNGKMPHQLVE- 555 (682)
Q Consensus 483 l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~- 555 (682)
+++|++|+|++|.+.+..+..+ ..+++|++|+|+.|.+++.. ++..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 4566666666665543222222 23567777777777765310 1222344577777777777766433333332
Q ss_pred CCCCCEEEccCcc
Q 045291 556 LKTLEVFSVAYNN 568 (682)
Q Consensus 556 l~~L~~L~l~~n~ 568 (682)
+ ...+++++++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 2 3456777765
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=5.1e-09 Score=105.68 Aligned_cols=86 Identities=17% Similarity=0.267 Sum_probs=53.7
Q ss_pred CCCCcEEEccCCCCCCCCCCcccccccCCCCCCEEEccCCCCccc----CchhhcCCCCCCEEeccCCccccccCCchhc
Q 045291 134 MPSLKYLSLSGSILGTNSSRILDQGLCSLVHLQELRMADNDLRGS----LPWCLANMTSLRILDVSFNQLTGSISSSPLV 209 (682)
Q Consensus 134 l~~L~~L~L~~~~l~~~~~~i~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~i~~~~~~ 209 (682)
+++|++|+|.+|.++........ ....+++|++|+|+.|.+.+. ++..+..+++|+.|+++.|.+++.. ...+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~-~~~l~ 328 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM-KKELQ 328 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH-HHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH-HHHHH
Confidence 77888888888777320000000 112467899999988888763 3334456788999999999887432 22233
Q ss_pred c-cCCCcEEecCCCc
Q 045291 210 H-LTSIEMLILSDNH 223 (682)
Q Consensus 210 ~-l~~L~~L~L~~n~ 223 (682)
. + ...++++.+.
T Consensus 329 ~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHC--CSEEECCSBC
T ss_pred HHc--CCEEEecCCc
Confidence 2 2 3568888776
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=6.7e-08 Score=87.83 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=63.3
Q ss_pred cccCCCCCCEEeccCC-cCCCC----chhhhcCCCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCcCCCC--
Q 045291 455 SLSKCSSLEGLYLNNN-SLSGK----IPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGR-- 523 (682)
Q Consensus 455 ~~~~l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~-- 523 (682)
.+...++|++|++++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.|+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444555555555555 55421 233344455666666666665532 223344445667777777766531
Q ss_pred -cchhhccCCCCCcEEEC--CCCcCCCC----chhhhhcCCCCCEEEccCccCc
Q 045291 524 -LIPSTFSNLKQIESLDL--SYNKLNGK----MPHQLVELKTLEVFSVAYNNLS 570 (682)
Q Consensus 524 -~~~~~~~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~ 570 (682)
.+...+...++|++|+| ++|.+... +.+.+...++|+.|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 12344555666777777 66666632 2234445567777777777664
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=8e-08 Score=87.33 Aligned_cols=112 Identities=10% Similarity=0.125 Sum_probs=61.5
Q ss_pred CCCccEEECCCC-cCccc----CCccccCCCCCCEEeccCCcCCCC----chhhhcCCCCCCeecCCCCcCcCC----cc
Q 045291 435 LTNLKWLLLEGN-RFVGE----IPQSLSKCSSLEGLYLNNNSLSGK----IPRWLGNLTRLQYIIMPNNHLEGP----IP 501 (682)
Q Consensus 435 l~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~ 501 (682)
.+.|++|++++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.|.+. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 344444444444 43321 223344455566666666655432 233344456666666666666543 23
Q ss_pred hhccCCCCCCEEEc--cCCcCCCCc---chhhccCCCCCcEEECCCCcCC
Q 045291 502 VEFCQLDLLQILDI--SDNNISGRL---IPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 502 ~~~~~l~~L~~L~L--s~n~~~~~~---~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
..+...++|++|+| ++|.+.... +...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 44555667777777 667775311 2344555677888888877764
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.34 E-value=1.1e-07 Score=90.63 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=42.3
Q ss_pred cCCCCCCeecCCCCcCcCC--cchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCch-------h
Q 045291 481 GNLTRLQYIIMPNNHLEGP--IPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMP-------H 551 (682)
Q Consensus 481 ~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~ 551 (682)
.++++|+.|+|++|.+++. ++..+..+++|+.|+|++|++++......+..+ +|++|+|++|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 3455666666666666552 234445566666666666666541111222222 56666666666654332 2
Q ss_pred hhhcCCCCCEEE
Q 045291 552 QLVELKTLEVFS 563 (682)
Q Consensus 552 ~l~~l~~L~~L~ 563 (682)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 344556665554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=8e-07 Score=78.33 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=61.8
Q ss_pred CccccccCCCCCCCEEecCCCCCCCccccCccccCCCCCCCEEeCCCCC-CCcchhHHHhhc----cCcceeeccCcccc
Q 045291 21 SKLLQSMGSFPSLNTLDLSYNNFTDIAITTTQELHNFTNLEYLTLDESS-LHISLLQSIASL----FPSLKNLSISYCEV 95 (682)
Q Consensus 21 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~l~~~~~~~~ 95 (682)
..+|.....-..|++||+|+|.|+... ...+..+++|++|+|++|. +++.....+..+ ..|++|++++|..+
T Consensus 51 ~~LP~~~~~~~~L~~LDLs~~~Itd~G---L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 51 NHLPTGPLDKYKIQAIDATDSCIMSIG---FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp GGSCCCSTTCCCEEEEEEESCCCCGGG---GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ccCCcccCCCceEeEEeCcCCCccHHH---HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 344544433457999999999988765 6678899999999999985 776666666653 35666666666544
Q ss_pred CcccCCCCCCCCCCCceeecCCC
Q 045291 96 NGVLRGQGFPSFKSLEHLHMSFA 118 (682)
Q Consensus 96 ~~~~~~~~~~~l~~L~~L~l~~~ 118 (682)
++..-. .+.++++|++|+++++
T Consensus 128 TD~Gl~-~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 128 TDKGII-ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CHHHHH-HGGGCTTCCEEEEESC
T ss_pred CHHHHH-HHhcCCCCCEEECCCC
Confidence 332111 1445666666666663
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.15 E-value=5.5e-07 Score=85.87 Aligned_cols=97 Identities=20% Similarity=0.217 Sum_probs=68.3
Q ss_pred ecCCCCcCc---CCcchhccCCCCCCEEEccCCcCCCC-cchhhccCCCCCcEEECCCCcCCCCchhhhhcCC--CCCEE
Q 045291 489 IIMPNNHLE---GPIPVEFCQLDLLQILDISDNNISGR-LIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELK--TLEVF 562 (682)
Q Consensus 489 L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~--~L~~L 562 (682)
++++.|... .........+++|+.|+|++|++++. .++..++.+++|+.|+|++|+|++. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 555666332 12222335688999999999999862 1236677899999999999999966 3344444 99999
Q ss_pred EccCccCcccCCc-------ccccccccCccc
Q 045291 563 SVAYNNLSGEIPE-------WTAQFATFNESS 587 (682)
Q Consensus 563 ~l~~n~l~~~~~~-------~~~~~~~l~~~~ 587 (682)
++++|++.+.+|+ .+..+++++.++
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 9999999987763 234456666554
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=3.2e-06 Score=74.46 Aligned_cols=34 Identities=6% Similarity=-0.039 Sum_probs=15.3
Q ss_pred CccEEECCCCcCcccCCccccCCCCCCEEeccCC
Q 045291 437 NLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNNN 470 (682)
Q Consensus 437 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 470 (682)
.|+.||+++|.++...-..+.++++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444332233344444455555444
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.64 E-value=5.6e-05 Score=67.91 Aligned_cols=50 Identities=12% Similarity=0.141 Sum_probs=28.0
Q ss_pred cccCCCCCCCEEecCCC-CCCCccccC-ccccCCCCCCCEEeCCCCCCCcch
Q 045291 25 QSMGSFPSLNTLDLSYN-NFTDIAITT-TQELHNFTNLEYLTLDESSLHISL 74 (682)
Q Consensus 25 ~~~~~l~~L~~L~Ls~n-~i~~~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~ 74 (682)
..+.+-+.|++|+|++| .|....... ...+..-+.|+.|+|++|.+....
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~g 86 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSE 86 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHH
Confidence 34455566777777764 555432111 114555667777777777765433
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.63 E-value=4.9e-05 Score=63.90 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=50.7
Q ss_pred CEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCCCCchhhhhcCCCCCEEEccCccCcccCC
Q 045291 511 QILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLNGKMPHQLVELKTLEVFSVAYNNLSGEIP 574 (682)
Q Consensus 511 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 574 (682)
..++.+++.++...+|..+ .++|+.|+|++|+|+.+.+..|..+++|+.|+|++|+|.|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4789999998711255433 3579999999999998888889999999999999999998665
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=0.00019 Score=64.44 Aligned_cols=113 Identities=12% Similarity=0.151 Sum_probs=62.3
Q ss_pred cCCCCCCEEeccCC-cCCC----CchhhhcCCCCCCeecCCCCcCcCC----cchhccCCCCCCEEEccCCcCCCC---c
Q 045291 457 SKCSSLEGLYLNNN-SLSG----KIPRWLGNLTRLQYIIMPNNHLEGP----IPVEFCQLDLLQILDISDNNISGR---L 524 (682)
Q Consensus 457 ~~l~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~---~ 524 (682)
.+-+.|++|++++| .+.+ .+.+.+..-+.|+.|+|++|.|.+. +.+++..-+.|+.|+|++|.|... .
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33455666666654 4432 1334445556666666666666532 223344456677777777777531 1
Q ss_pred chhhccCCCCCcEEECCCCcC---CC----CchhhhhcCCCCCEEEccCccC
Q 045291 525 IPSTFSNLKQIESLDLSYNKL---NG----KMPHQLVELKTLEVFSVAYNNL 569 (682)
Q Consensus 525 ~~~~~~~l~~L~~L~l~~n~l---~~----~~~~~l~~l~~L~~L~l~~n~l 569 (682)
+..++..-+.|++|+|++|.. .. .+.+.+..-++|..|+++.|..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 123455556677777775532 21 1234455567777777776654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.29 E-value=0.00038 Score=58.42 Aligned_cols=56 Identities=20% Similarity=0.271 Sum_probs=35.4
Q ss_pred eecCCCCcCc-CCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCCcCC
Q 045291 488 YIIMPNNHLE-GPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYNKLN 546 (682)
Q Consensus 488 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 546 (682)
.++-+++.++ ..+|..+ -++|+.|+|++|+|+. +.+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTA-LPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSS-CCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCc-cChhhhhhccccCEEEecCCCee
Confidence 5666666665 2333222 1357777777777765 55666777777777777777665
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=62.87 E-value=11 Score=29.15 Aligned_cols=43 Identities=23% Similarity=0.144 Sum_probs=20.2
Q ss_pred CcccccCCCCCCccEEECCCCcCcccCCccccCCCCCCEEeccC
Q 045291 426 GHMFSRNFNLTNLKWLLLEGNRFVGEIPQSLSKCSSLEGLYLNN 469 (682)
Q Consensus 426 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 469 (682)
.+....|.++.+|+.+.|..+ ++.+-..+|.+|.+|+.+.+.+
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 333444444555555555443 2333444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.47 E-value=13 Score=28.73 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=30.0
Q ss_pred CcCcCCcchhccCCCCCCEEEccCCcCCCCcchhhccCCCCCcEEECCCC
Q 045291 494 NHLEGPIPVEFCQLDLLQILDISDNNISGRLIPSTFSNLKQIESLDLSYN 543 (682)
Q Consensus 494 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~l~~n 543 (682)
..++.+...+|.++++|+.+.+-.+ ++. +-..+|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~-Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGL-LYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSC-CCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hhe-EcHHHHhccCCccEEEEcCC
Confidence 3445555566777777777777654 332 44566777777777777653
Done!