Query 045292
Match_columns 673
No_of_seqs 366 out of 1879
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 11:45:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 1.1E-70 2.5E-75 555.1 17.0 172 239-410 1-229 (229)
2 KOG0842 Transcription factor t 99.7 1.3E-16 2.8E-21 167.5 8.0 67 54-120 149-215 (307)
3 KOG0483 Transcription factor H 99.6 1.3E-16 2.7E-21 159.1 6.2 80 63-142 55-134 (198)
4 KOG0488 Transcription factor B 99.6 7.1E-16 1.5E-20 163.9 5.0 66 54-119 168-233 (309)
5 PF01852 START: START domain; 99.6 1.6E-14 3.5E-19 143.0 13.6 156 244-410 1-205 (206)
6 KOG0485 Transcription factor N 99.5 5E-15 1.1E-19 146.7 6.5 64 54-117 100-163 (268)
7 KOG0487 Transcription factor A 99.5 2.3E-15 5E-20 158.3 4.1 66 55-120 232-297 (308)
8 KOG0843 Transcription factor E 99.5 3.4E-15 7.3E-20 144.6 3.9 64 57-120 101-164 (197)
9 KOG0489 Transcription factor z 99.5 1.4E-15 3.1E-20 158.4 1.2 64 56-119 157-220 (261)
10 KOG0494 Transcription factor C 99.5 1.2E-14 2.6E-19 147.2 6.3 72 58-129 140-212 (332)
11 smart00234 START in StAR and p 99.5 3.3E-13 7.1E-18 134.0 16.2 99 311-410 104-205 (206)
12 KOG0850 Transcription factor D 99.5 2.2E-14 4.8E-19 143.7 6.6 64 55-118 119-182 (245)
13 KOG0484 Transcription factor P 99.5 1.1E-14 2.4E-19 129.5 1.3 65 54-118 13-77 (125)
14 KOG0492 Transcription factor M 99.5 5.5E-14 1.2E-18 138.7 5.6 63 56-118 142-204 (246)
15 KOG0848 Transcription factor C 99.4 3.1E-14 6.7E-19 144.9 2.6 65 56-120 197-261 (317)
16 PF00046 Homeobox: Homeobox do 99.4 5.9E-14 1.3E-18 112.7 2.5 57 59-115 1-57 (57)
17 KOG2251 Homeobox transcription 99.4 1.3E-13 2.8E-18 137.7 4.9 68 53-120 32-99 (228)
18 KOG0493 Transcription factor E 99.3 6.4E-13 1.4E-17 134.8 4.3 59 59-117 247-305 (342)
19 KOG0844 Transcription factor E 99.3 2.8E-12 6E-17 132.6 5.1 62 57-118 180-241 (408)
20 KOG0486 Transcription factor P 99.3 4.9E-12 1.1E-16 131.6 6.1 60 57-116 111-170 (351)
21 KOG3802 Transcription factor O 99.2 3.1E-12 6.8E-17 137.4 3.7 62 55-116 291-352 (398)
22 smart00389 HOX Homeodomain. DN 99.2 3E-12 6.5E-17 102.0 2.3 55 60-114 2-56 (56)
23 cd00086 homeodomain Homeodomai 99.2 3.9E-12 8.5E-17 102.0 2.8 57 60-116 2-58 (59)
24 COG5576 Homeodomain-containing 99.2 4E-12 8.7E-17 123.0 3.4 64 56-119 49-112 (156)
25 TIGR01565 homeo_ZF_HD homeobox 99.2 1.2E-11 2.6E-16 100.8 5.4 53 58-110 1-57 (58)
26 KOG0491 Transcription factor B 99.2 2.5E-12 5.5E-17 123.0 -0.4 64 57-120 99-162 (194)
27 KOG4577 Transcription factor L 99.1 5.2E-11 1.1E-15 122.5 5.3 72 58-129 167-238 (383)
28 KOG0847 Transcription factor, 99.0 4.7E-11 1E-15 118.9 1.5 63 56-118 165-227 (288)
29 cd00177 START Lipid-binding ST 98.9 2.3E-08 5.1E-13 96.8 14.1 104 299-407 84-190 (193)
30 KOG0490 Transcription factor, 98.8 1.7E-09 3.6E-14 109.4 3.9 63 55-117 57-119 (235)
31 cd08871 START_STARD10-like Lip 98.7 3.1E-07 6.7E-12 93.3 15.8 117 299-421 93-212 (222)
32 cd08868 START_STARD1_3_like Ch 98.7 4.5E-07 9.7E-12 91.3 15.1 159 242-412 6-208 (208)
33 KOG0849 Transcription factor P 98.6 2.7E-08 5.9E-13 108.2 3.5 65 54-118 172-236 (354)
34 KOG1168 Transcription factor A 98.6 3.6E-08 7.8E-13 102.0 4.0 61 56-116 307-367 (385)
35 cd08867 START_STARD4_5_6-like 98.6 1.4E-06 3.1E-11 87.6 15.3 96 310-409 105-205 (206)
36 cd08909 START_STARD13-like C-t 98.5 1.4E-06 3E-11 88.3 12.1 81 299-380 95-178 (205)
37 cd08904 START_STARD6-like Lipi 98.4 2.3E-06 4.9E-11 86.7 13.0 132 243-380 4-178 (204)
38 cd08869 START_RhoGAP C-termina 98.3 7.3E-06 1.6E-10 82.3 12.2 83 300-384 88-173 (197)
39 KOG0775 Transcription factor S 98.2 6E-07 1.3E-11 92.8 3.5 51 65-115 183-233 (304)
40 cd08905 START_STARD1-like Chol 98.1 2.8E-05 6E-10 78.9 12.8 157 242-410 6-207 (209)
41 cd08903 START_STARD5-like Lipi 98.1 6.4E-05 1.4E-09 76.2 15.1 99 307-409 99-205 (208)
42 cd08906 START_STARD3-like Chol 97.9 0.00014 3.1E-09 73.8 13.5 104 301-410 97-207 (209)
43 cd08902 START_STARD4-like Lipi 97.9 0.00017 3.8E-09 72.8 13.1 161 243-408 4-200 (202)
44 KOG0774 Transcription factor P 97.8 1.4E-05 2.9E-10 82.3 3.1 58 59-116 189-249 (334)
45 cd08908 START_STARD12-like C-t 97.8 0.0002 4.4E-09 72.7 11.1 83 300-384 96-180 (204)
46 PLN00188 enhanced disease resi 97.7 0.00047 1E-08 80.4 14.6 118 247-382 239-365 (719)
47 PF05920 Homeobox_KN: Homeobox 97.6 1.3E-05 2.7E-10 60.9 -0.4 34 79-112 7-40 (40)
48 cd08874 START_STARD9-like C-te 97.5 0.00062 1.3E-08 69.2 9.8 96 282-383 78-181 (205)
49 cd08907 START_STARD8-like C-te 97.5 0.00042 9.1E-09 70.2 8.4 70 311-380 106-178 (205)
50 KOG0490 Transcription factor, 97.4 0.00014 3E-09 73.6 4.2 67 52-118 147-213 (235)
51 KOG2252 CCAAT displacement pro 97.3 0.00015 3.1E-09 81.7 3.5 56 58-113 420-475 (558)
52 cd08877 START_2 Uncharacterize 97.3 0.0085 1.8E-07 60.7 15.4 107 300-410 92-213 (215)
53 cd08876 START_1 Uncharacterize 97.1 0.0061 1.3E-07 60.2 12.1 105 300-409 87-194 (195)
54 cd08910 START_STARD2-like Lipi 97.0 0.0042 9.2E-08 63.0 9.8 106 300-410 94-205 (207)
55 cd08869 START_RhoGAP C-termina 96.9 0.041 8.8E-07 55.4 16.3 174 456-667 17-196 (197)
56 cd08871 START_STARD10-like Lip 96.8 0.041 8.8E-07 56.1 15.4 175 456-666 21-201 (222)
57 cd08870 START_STARD2_7-like Li 96.8 0.018 3.8E-07 58.4 12.5 107 299-410 97-207 (209)
58 cd08911 START_STARD7-like Lipi 96.5 0.03 6.5E-07 56.8 12.0 105 300-410 93-205 (207)
59 cd08907 START_STARD8-like C-te 96.4 0.2 4.3E-06 51.1 17.2 175 455-666 24-203 (205)
60 cd08872 START_STARD11-like Cer 96.4 0.067 1.5E-06 55.5 14.2 105 300-409 99-224 (235)
61 cd08873 START_STARD14_15-like 96.2 0.031 6.8E-07 58.1 10.4 76 300-376 123-203 (235)
62 KOG1146 Homeobox protein [Gene 96.1 0.0022 4.7E-08 78.5 1.6 61 58-118 903-963 (1406)
63 cd08904 START_STARD6-like Lipi 95.7 0.14 3.1E-06 52.1 12.3 149 457-635 21-176 (204)
64 cd08874 START_STARD9-like C-te 95.4 0.17 3.7E-06 51.6 11.7 152 455-635 19-176 (205)
65 cd08868 START_STARD1_3_like Ch 95.3 0.85 1.9E-05 46.0 16.2 176 457-666 23-206 (208)
66 cd00177 START Lipid-binding ST 95.2 0.39 8.6E-06 46.3 13.2 147 458-635 15-165 (193)
67 KOG0773 Transcription factor M 95.2 0.028 6E-07 61.1 5.6 61 58-118 239-302 (342)
68 cd08914 START_STARD15-like Lip 94.9 0.14 3.1E-06 53.3 9.5 81 302-385 125-211 (236)
69 cd08876 START_1 Uncharacterize 94.7 1.3 2.7E-05 43.8 15.5 149 455-635 14-167 (195)
70 smart00234 START in StAR and p 94.7 0.61 1.3E-05 46.3 13.1 150 457-635 18-173 (206)
71 cd08903 START_STARD5-like Lipi 94.4 0.95 2.1E-05 46.0 14.0 178 456-666 20-206 (208)
72 cd08913 START_STARD14-like Lip 94.4 0.18 4E-06 52.6 8.9 72 312-385 139-215 (240)
73 cd08877 START_2 Uncharacterize 94.3 1.7 3.7E-05 44.0 15.7 117 444-576 10-129 (215)
74 cd08909 START_STARD13-like C-t 94.2 1.3 2.7E-05 45.4 14.4 173 458-666 27-203 (205)
75 PF11569 Homez: Homeodomain le 94.1 0.013 2.9E-07 47.7 -0.1 42 69-110 9-50 (56)
76 cd08908 START_STARD12-like C-t 94.1 1.2 2.6E-05 45.6 13.9 172 459-666 28-202 (204)
77 cd08914 START_STARD15-like Lip 93.1 0.83 1.8E-05 47.7 11.0 57 455-521 53-109 (236)
78 cd08867 START_STARD4_5_6-like 92.4 5.7 0.00012 39.9 15.8 162 439-635 9-178 (206)
79 cd08873 START_STARD14_15-like 92.4 1.2 2.6E-05 46.6 11.0 66 456-533 53-118 (235)
80 cd08906 START_STARD3-like Chol 92.2 4.1 8.9E-05 41.5 14.5 130 457-606 24-160 (209)
81 cd08875 START_ArGLABRA2_like C 92.1 2.9 6.3E-05 43.6 13.3 188 436-643 3-205 (229)
82 cd08902 START_STARD4-like Lipi 91.1 1.5 3.2E-05 44.9 9.6 59 455-521 20-78 (202)
83 cd08870 START_STARD2_7-like Li 90.6 3 6.5E-05 42.2 11.6 109 457-576 21-133 (209)
84 KOG4005 Transcription factor X 90.2 1.7 3.6E-05 45.2 9.1 60 107-180 82-143 (292)
85 PRK09413 IS2 repressor TnpA; R 90.0 1.2 2.7E-05 41.4 7.6 40 63-107 11-51 (121)
86 PF01852 START: START domain; 89.9 3.3 7.1E-05 40.9 11.0 166 440-635 2-173 (206)
87 KOG4196 bZIP transcription fac 88.8 2.5 5.4E-05 40.2 8.5 86 63-182 22-108 (135)
88 cd08864 SRPBCC_DUF3074 DUF3074 87.6 3.2 6.9E-05 42.5 9.3 120 250-384 53-184 (208)
89 cd08911 START_STARD7-like Lipi 84.6 7.4 0.00016 39.4 10.2 179 456-666 19-205 (207)
90 cd08910 START_STARD2-like Lipi 83.8 1.5 3.2E-05 44.6 4.7 93 455-563 22-116 (207)
91 KOG3623 Homeobox transcription 82.0 0.69 1.5E-05 54.4 1.6 47 70-116 568-614 (1007)
92 PF06005 DUF904: Protein of un 81.7 5 0.00011 34.5 6.3 44 117-181 15-58 (72)
93 PF02183 HALZ: Homeobox associ 81.4 3.8 8.2E-05 32.2 5.0 24 117-140 2-25 (45)
94 PF04218 CENP-B_N: CENP-B N-te 80.9 1.1 2.5E-05 35.9 2.1 46 59-109 1-46 (53)
95 PLN00188 enhanced disease resi 79.0 9.6 0.00021 45.6 9.6 120 497-636 234-362 (719)
96 cd08913 START_STARD14-like Lip 78.6 2.7 5.8E-05 44.1 4.5 57 455-521 56-112 (240)
97 PRK15422 septal ring assembly 75.6 9.4 0.0002 33.4 6.2 60 114-187 12-75 (79)
98 cd08905 START_STARD1-like Chol 74.0 1.1E+02 0.0023 31.2 15.4 76 437-522 6-82 (209)
99 TIGR00219 mreC rod shape-deter 72.2 6.8 0.00015 42.0 5.6 43 121-180 67-109 (283)
100 cd08860 TcmN_ARO-CYC_like N-te 72.1 45 0.00098 31.9 10.7 123 266-411 22-144 (146)
101 cd08872 START_STARD11-like Cer 71.7 10 0.00022 39.5 6.7 64 451-521 19-84 (235)
102 PRK13922 rod shape-determining 70.1 8.1 0.00018 40.7 5.6 41 121-179 70-110 (276)
103 PF02183 HALZ: Homeobox associ 69.7 12 0.00026 29.4 5.0 39 124-183 2-40 (45)
104 COG3074 Uncharacterized protei 68.6 17 0.00036 31.2 6.0 58 116-187 14-75 (79)
105 smart00338 BRLZ basic region l 67.5 22 0.00047 29.4 6.5 39 119-178 25-63 (65)
106 PF00170 bZIP_1: bZIP transcri 63.9 31 0.00067 28.4 6.8 24 119-142 25-48 (64)
107 PF06156 DUF972: Protein of un 62.8 16 0.00035 33.8 5.3 47 123-183 11-57 (107)
108 KOG4343 bZIP transcription fac 62.4 19 0.00042 41.6 6.8 22 162-183 316-337 (655)
109 KOG2761 START domain-containin 60.8 43 0.00093 34.8 8.5 74 300-374 101-183 (219)
110 PF12711 Kinesin-relat_1: Kine 60.7 22 0.00049 31.7 5.6 46 125-185 22-67 (86)
111 TIGR03752 conj_TIGR03752 integ 59.3 16 0.00035 41.8 5.6 63 64-143 41-103 (472)
112 PF14389 Lzipper-MIP1: Leucine 58.8 87 0.0019 27.9 9.1 71 110-183 5-75 (88)
113 PRK13169 DNA replication intia 57.6 22 0.00047 33.2 5.2 22 161-182 35-56 (110)
114 PF10604 Polyketide_cyc2: Poly 57.4 32 0.00069 30.9 6.4 50 357-410 89-139 (139)
115 COG4026 Uncharacterized protei 55.4 43 0.00092 35.0 7.3 49 114-183 143-191 (290)
116 cd07821 PYR_PYL_RCAR_like Pyra 54.5 26 0.00057 31.4 5.3 50 356-409 90-139 (140)
117 PF01527 HTH_Tnp_1: Transposas 53.0 1.2 2.5E-05 37.3 -3.6 43 60-106 2-44 (76)
118 KOG3119 Basic region leucine z 49.8 29 0.00063 37.0 5.4 30 159-188 226-255 (269)
119 KOG0288 WD40 repeat protein Ti 48.9 43 0.00093 37.8 6.6 55 115-183 22-76 (459)
120 PF14197 Cep57_CLD_2: Centroso 46.1 62 0.0013 27.7 5.8 21 161-181 46-66 (69)
121 KOG4571 Activating transcripti 45.9 50 0.0011 35.7 6.4 27 117-143 245-271 (294)
122 KOG0709 CREB/ATF family transc 45.7 1.9E+02 0.0041 33.3 11.1 98 62-186 218-317 (472)
123 PRK13729 conjugal transfer pil 45.4 69 0.0015 36.9 7.8 60 106-179 62-121 (475)
124 COG1792 MreC Cell shape-determ 45.2 55 0.0012 35.2 6.7 44 119-180 65-108 (284)
125 KOG1146 Homeobox protein [Gene 44.8 10 0.00022 48.0 1.2 87 58-157 444-530 (1406)
126 KOG0971 Microtubule-associated 44.5 77 0.0017 39.1 8.2 57 124-186 336-392 (1243)
127 PF15058 Speriolin_N: Sperioli 42.8 46 0.001 33.9 5.2 40 122-183 7-46 (200)
128 PF10482 CtIP_N: Tumour-suppre 42.4 11 0.00025 35.1 0.9 33 121-153 43-75 (120)
129 cd07822 SRPBCC_4 Ligand-bindin 41.7 48 0.001 29.7 4.9 51 357-410 91-141 (141)
130 cd07819 SRPBCC_2 Ligand-bindin 41.1 18 0.00039 32.7 2.0 30 491-520 3-32 (140)
131 PF04967 HTH_10: HTH DNA bindi 41.0 35 0.00075 27.7 3.3 37 65-101 1-39 (53)
132 cd08865 SRPBCC_10 Ligand-bindi 41.0 15 0.00033 32.8 1.5 27 493-519 2-28 (140)
133 PRK14872 rod shape-determining 40.7 40 0.00087 37.2 4.9 41 121-179 58-98 (337)
134 cd08866 SRPBCC_11 Ligand-bindi 39.9 70 0.0015 29.3 5.8 49 358-410 94-143 (144)
135 PF10604 Polyketide_cyc2: Poly 39.9 25 0.00054 31.6 2.8 133 493-665 5-138 (139)
136 cd07823 SRPBCC_5 Ligand-bindin 39.5 12 0.00026 35.1 0.6 26 494-519 3-28 (146)
137 smart00340 HALZ homeobox assoc 39.5 30 0.00066 26.9 2.6 19 165-183 15-33 (44)
138 PF07407 Seadorna_VP6: Seadorn 39.4 40 0.00088 36.9 4.5 20 122-141 34-53 (420)
139 cd07818 SRPBCC_1 Ligand-bindin 37.6 53 0.0012 30.4 4.7 51 359-410 99-149 (150)
140 cd07821 PYR_PYL_RCAR_like Pyra 36.8 24 0.00052 31.7 2.1 27 493-519 4-30 (140)
141 cd07817 SRPBCC_8 Ligand-bindin 36.1 22 0.00049 32.1 1.8 28 493-520 3-30 (139)
142 PF04880 NUDE_C: NUDE protein, 36.1 41 0.00089 33.6 3.7 18 164-181 26-43 (166)
143 PRK10884 SH3 domain-containing 35.9 77 0.0017 32.6 5.8 19 125-143 130-148 (206)
144 cd08901 SRPBCC_CalC_Aha1-like_ 35.8 20 0.00044 33.3 1.5 27 492-518 2-28 (136)
145 KOG3755 SATB1 matrix attachmen 35.4 9.4 0.0002 44.6 -0.9 44 74-117 708-758 (769)
146 cd07825 SRPBCC_7 Ligand-bindin 35.2 26 0.00056 32.2 2.1 27 493-519 3-29 (144)
147 cd07817 SRPBCC_8 Ligand-bindin 34.9 94 0.002 28.0 5.7 52 359-410 87-138 (139)
148 cd08866 SRPBCC_11 Ligand-bindi 34.7 22 0.00047 32.7 1.5 27 493-519 2-28 (144)
149 KOG3119 Basic region leucine z 34.5 89 0.0019 33.3 6.2 15 165-179 239-253 (269)
150 KOG1962 B-cell receptor-associ 34.3 1.1E+02 0.0023 32.0 6.4 20 163-182 180-199 (216)
151 cd08862 SRPBCC_Smu440-like Lig 34.1 27 0.00058 31.6 2.0 30 491-520 2-31 (138)
152 cd05018 CoxG Carbon monoxide d 33.9 18 0.0004 32.8 0.9 27 494-520 5-31 (144)
153 TIGR03752 conj_TIGR03752 integ 33.9 97 0.0021 35.7 6.6 28 116-143 69-96 (472)
154 KOG4571 Activating transcripti 33.8 1.1E+02 0.0024 33.1 6.7 27 158-184 258-284 (294)
155 PRK10884 SH3 domain-containing 33.8 62 0.0013 33.3 4.7 15 125-139 137-151 (206)
156 PRK06266 transcription initiat 33.7 35 0.00077 34.2 2.9 36 145-180 136-171 (178)
157 cd08865 SRPBCC_10 Ligand-bindi 33.1 76 0.0016 28.3 4.8 50 358-410 90-139 (140)
158 cd08861 OtcD1_ARO-CYC_like N-t 32.4 76 0.0017 29.0 4.8 51 358-410 91-141 (142)
159 cd07812 SRPBCC START/RHO_alpha 32.0 27 0.00059 30.1 1.6 26 494-519 3-28 (141)
160 cd01106 HTH_TipAL-Mta Helix-Tu 32.0 1.5E+02 0.0034 26.4 6.5 36 62-110 36-71 (103)
161 PF07989 Microtub_assoc: Micro 31.3 1.2E+02 0.0025 26.4 5.3 59 120-184 7-65 (75)
162 cd07814 SRPBCC_CalC_Aha1-like 31.3 24 0.00052 31.8 1.2 27 493-519 3-29 (139)
163 KOG2761 START domain-containin 31.2 62 0.0013 33.7 4.2 59 454-520 25-84 (219)
164 cd07818 SRPBCC_1 Ligand-bindin 30.4 87 0.0019 29.0 4.8 31 492-522 4-34 (150)
165 PRK00888 ftsB cell division pr 29.8 67 0.0014 29.5 3.8 41 101-142 16-56 (105)
166 cd07819 SRPBCC_2 Ligand-bindin 29.6 3.8E+02 0.0081 23.9 8.8 115 266-408 23-139 (140)
167 PF07106 TBPIP: Tat binding pr 29.6 99 0.0021 30.3 5.2 42 102-143 56-102 (169)
168 PF14662 CCDC155: Coiled-coil 29.3 1.2E+02 0.0026 31.1 5.7 57 108-178 83-139 (193)
169 cd07813 COQ10p_like Coenzyme Q 29.2 1.2E+02 0.0025 27.8 5.4 118 266-411 20-137 (138)
170 cd06171 Sigma70_r4 Sigma70, re 28.1 20 0.00044 26.6 0.1 41 64-109 10-50 (55)
171 TIGR02449 conserved hypothetic 27.8 2.5E+02 0.0053 24.0 6.5 40 122-182 9-48 (65)
172 PF04545 Sigma70_r4: Sigma-70, 27.6 38 0.00082 26.2 1.6 37 64-105 4-40 (50)
173 cd07822 SRPBCC_4 Ligand-bindin 27.5 44 0.00095 30.0 2.2 26 494-519 4-29 (141)
174 PF07716 bZIP_2: Basic region 27.4 2E+02 0.0043 22.9 5.7 38 109-177 17-54 (54)
175 PHA03162 hypothetical protein; 27.3 33 0.00071 32.9 1.3 25 156-180 14-38 (135)
176 KOG4005 Transcription factor X 27.0 99 0.0021 32.6 4.8 49 118-180 102-150 (292)
177 KOG3156 Uncharacterized membra 26.9 2.2E+02 0.0048 29.6 7.2 48 119-186 93-140 (220)
178 PF00170 bZIP_1: bZIP transcri 25.9 2.7E+02 0.0058 22.8 6.4 18 164-181 42-59 (64)
179 PRK00888 ftsB cell division pr 25.5 1.2E+02 0.0026 27.8 4.7 33 108-140 29-61 (105)
180 COG4467 Regulator of replicati 24.7 1.4E+02 0.0031 27.8 4.9 19 162-180 36-54 (114)
181 KOG4343 bZIP transcription fac 24.6 97 0.0021 36.2 4.6 22 122-143 311-332 (655)
182 PHA01817 hypothetical protein 24.3 1E+02 0.0022 33.5 4.4 27 237-264 210-236 (479)
183 COG1675 TFA1 Transcription ini 24.1 69 0.0015 32.3 3.0 38 146-183 133-170 (176)
184 PF06785 UPF0242: Uncharacteri 24.1 96 0.0021 34.3 4.2 73 105-189 54-126 (401)
185 cd07820 SRPBCC_3 Ligand-bindin 24.1 47 0.001 30.7 1.8 26 494-519 3-28 (137)
186 PTZ00454 26S protease regulato 23.3 2.1E+02 0.0046 32.2 7.0 45 118-183 20-64 (398)
187 TIGR00219 mreC rod shape-deter 23.3 3E+02 0.0064 29.6 7.8 43 125-185 64-107 (283)
188 COG3413 Predicted DNA binding 23.3 57 0.0012 33.1 2.4 38 64-101 155-194 (215)
189 KOG4403 Cell surface glycoprot 23.2 2.5E+02 0.0055 32.2 7.3 20 163-182 303-322 (575)
190 cd08898 SRPBCC_CalC_Aha1-like_ 22.8 55 0.0012 29.9 2.0 28 493-520 4-31 (145)
191 PF09726 Macoilin: Transmembra 22.6 5.1E+02 0.011 31.6 10.4 7 309-315 668-674 (697)
192 PRK03975 tfx putative transcri 22.2 67 0.0015 31.2 2.4 47 63-115 5-51 (141)
193 PF12824 MRP-L20: Mitochondria 22.0 1.8E+02 0.0039 28.9 5.5 45 62-108 83-127 (164)
194 cd00569 HTH_Hin_like Helix-tur 22.0 84 0.0018 20.5 2.3 37 64-105 5-41 (42)
195 PF07334 IFP_35_N: Interferon- 22.0 86 0.0019 27.5 2.8 15 167-181 5-19 (76)
196 cd04765 HTH_MlrA-like_sg2 Heli 21.9 1.2E+02 0.0026 27.3 3.9 63 61-142 35-98 (99)
197 COG5481 Uncharacterized conser 21.9 1.2E+02 0.0025 25.5 3.4 53 123-183 7-59 (67)
198 KOG4196 bZIP transcription fac 21.4 5.8E+02 0.013 24.7 8.3 22 165-186 98-119 (135)
199 smart00340 HALZ homeobox assoc 21.2 1.2E+02 0.0027 23.7 3.1 26 118-143 3-28 (44)
200 PRK00118 putative DNA-binding 21.2 1.9E+02 0.0041 26.7 5.0 48 64-116 17-64 (104)
201 PF06005 DUF904: Protein of un 21.0 3.6E+02 0.0079 23.2 6.4 23 119-141 24-46 (72)
202 PF05494 Tol_Tol_Ttg2: Toluene 20.9 1.4E+02 0.003 29.1 4.4 56 282-342 85-140 (170)
203 TIGR02209 ftsL_broad cell divi 20.7 3.2E+02 0.0069 23.3 6.2 22 167-189 50-71 (85)
204 TIGR02894 DNA_bind_RsfA transc 20.7 3.5E+02 0.0076 27.0 7.0 18 165-182 128-145 (161)
205 PF10224 DUF2205: Predicted co 20.5 5.5E+02 0.012 22.7 7.5 22 162-183 44-65 (80)
206 cd07824 SRPBCC_6 Ligand-bindin 20.4 61 0.0013 30.3 1.7 36 494-534 5-40 (146)
207 cd05018 CoxG Carbon monoxide d 20.4 2.1E+02 0.0046 25.8 5.3 103 266-390 22-124 (144)
208 PF02724 CDC45: CDC45-like pro 20.3 1.5E+02 0.0032 35.5 5.2 36 64-99 196-234 (622)
209 cd08893 SRPBCC_CalC_Aha1-like_ 20.2 54 0.0012 29.5 1.3 25 495-519 5-29 (136)
210 PHA03155 hypothetical protein; 20.1 44 0.00095 31.3 0.7 23 158-180 11-33 (115)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=1.1e-70 Score=555.09 Aligned_cols=172 Identities=66% Similarity=1.161 Sum_probs=167.4
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCccc-----------------------------------------------------
Q 045292 239 KPMIVELAVAAMEEFLRMAQAGDPLWT----------------------------------------------------- 265 (673)
Q Consensus 239 ~~~~~~lA~~Am~El~~la~~~~plW~----------------------------------------------------- 265 (673)
|++|++||++||+||++||++++|||+
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 578999999999999999999999999
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCC--
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR-- 343 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~-- 343 (673)
|.++|.++||+||+||+|++||++|.+|++||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~~ 160 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQTA 160 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred --CCCCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 344 --PSPTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 344 --~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
+.+++||||+|||||||||+|||||||||||+|||++.+|.+||++++||+||||+||+++||||||
T Consensus 161 p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 161 PPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred CCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 3368999999999999999999999999999999999999999999999999999999999999997
No 2
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription]
Probab=99.66 E-value=1.3e-16 Score=167.54 Aligned_cols=67 Identities=36% Similarity=0.535 Sum_probs=62.6
Q ss_pred CCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHH
Q 045292 54 SQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERH 120 (673)
Q Consensus 54 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 120 (673)
.+++|||+|.-||..|+.+||+.|++++|++..+|++||..|+|++.||||||||||.|.||+++.+
T Consensus 149 ~~~~kRKrRVLFSqAQV~ELERRFrqQRYLSAPERE~LA~~LrLT~TQVKIWFQNrRYK~KR~~~dk 215 (307)
T KOG0842|consen 149 GKRKKRKRRVLFSQAQVYELERRFRQQRYLSAPEREHLASSLRLTPTQVKIWFQNRRYKTKRQQKDK 215 (307)
T ss_pred ccccccccccccchhHHHHHHHHHHhhhccccHhHHHHHHhcCCCchheeeeeecchhhhhhhhhhh
Confidence 4677888889999999999999999999999999999999999999999999999999999976654
No 3
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=99.65 E-value=1.3e-16 Score=159.12 Aligned_cols=80 Identities=34% Similarity=0.592 Sum_probs=75.7
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENNRYKEA 142 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~ 142 (673)
.|||.+|+..||+.|+...+..+.++..||++|||.+|||++||||||||||.++.+.++..|+.+++.|+.++..|+..
T Consensus 55 ~Rlt~eQ~~~LE~~F~~~~~L~p~~K~~LAk~LgL~pRQVavWFQNRRARwK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e 134 (198)
T KOG0483|consen 55 RRLTSEQVKFLEKSFESEKKLEPERKKKLAKELGLQPRQVAVWFQNRRARWKTKQLEKDYESLKRQLESLRSENDRLQSE 134 (198)
T ss_pred ccccHHHHHHhHHhhccccccChHHHHHHHHhhCCChhHHHHHHhhccccccchhhhhhHHHHHHHHHHHhhhhhHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999988876543
No 4
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only]
Probab=99.59 E-value=7.1e-16 Score=163.86 Aligned_cols=66 Identities=35% Similarity=0.482 Sum_probs=62.1
Q ss_pred CCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHH
Q 045292 54 SQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHER 119 (673)
Q Consensus 54 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 119 (673)
..||+||.|+.||..|+..||+.|++.+|.+..+|.+||+.|||+..|||+||||||+||||+..+
T Consensus 168 ~pkK~RksRTaFT~~Ql~~LEkrF~~QKYLS~~DR~~LA~~LgLTdaQVKtWfQNRRtKWKrq~a~ 233 (309)
T KOG0488|consen 168 TPKKRRKSRTAFSDHQLFELEKRFEKQKYLSVADRIELAASLGLTDAQVKTWFQNRRTKWKRQTAE 233 (309)
T ss_pred CCcccccchhhhhHHHHHHHHHHHHHhhcccHHHHHHHHHHcCCchhhHHHHHhhhhHHHHHHHHh
Confidence 347888899999999999999999999999999999999999999999999999999999997554
No 5
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.58 E-value=1.6e-14 Score=142.99 Aligned_cols=156 Identities=25% Similarity=0.370 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHhhcCCCCccc--------------------------------------------ch-hhhhcccccce
Q 045292 244 ELAVAAMEEFLRMAQAGDPLWT--------------------------------------------DQ-NQWSSVFCGIV 278 (673)
Q Consensus 244 ~lA~~Am~El~~la~~~~plW~--------------------------------------------D~-~~w~~~Fp~iv 278 (673)
++|.++|.+++++++.++.-|. |. .+|-+++-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~--- 77 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCV--- 77 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEE---
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchh---
Confidence 5899999999999999999998 22 26776663
Q ss_pred eeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCC----CCCcceeecC
Q 045292 279 SRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRP----SPTSKCRRRP 354 (673)
Q Consensus 279 arA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~----~~~~~~~~~P 354 (673)
.+..++.++. +..|..++.++..++|+.| |||.++|++++.++|.++|+..|++.-.. ..++|+..++
T Consensus 78 -~~~~le~~~~------~~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~ 149 (206)
T PF01852_consen 78 -EAEVLEQIDE------DTDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILI 149 (206)
T ss_dssp -EEEEEEEEET------TEEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEES
T ss_pred -hheeeeecCC------CCeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeee
Confidence 5566666663 2678888888999999999 99999999999999999999999975432 2679999999
Q ss_pred CcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 355 SGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 355 SGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
||++|++.++|.|+||+|-|++..-+..+-+++.++.+...-..+.+.+.|++|++
T Consensus 150 s~~~i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T PF01852_consen 150 SGWVIRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKKQKK 205 (206)
T ss_dssp EEEEEEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCT
T ss_pred EeEEEEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999899999999999999999999999988765
No 6
>KOG0485 consensus Transcription factor NKX-5.1/HMX1, contains HOX domain [Transcription]
Probab=99.55 E-value=5e-15 Score=146.72 Aligned_cols=64 Identities=30% Similarity=0.420 Sum_probs=60.5
Q ss_pred CCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 54 SQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 54 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
++.+|||.|+.|+..|+..||..|+..+|.+..+|..||++|.|++.||||||||||.||||+-
T Consensus 100 g~~RKKktRTvFSraQV~qLEs~Fe~krYLSsaeRa~LA~sLqLTETQVKIWFQNRRnKwKRq~ 163 (268)
T KOG0485|consen 100 GDDRKKKTRTVFSRAQVFQLESTFELKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQY 163 (268)
T ss_pred cccccccchhhhhHHHHHHHHHHHHHHhhhhHHHHhHHHHhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999999953
No 7
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription]
Probab=99.54 E-value=2.3e-15 Score=158.27 Aligned_cols=66 Identities=35% Similarity=0.406 Sum_probs=60.9
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERH 120 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 120 (673)
.+.-||||..+|+.|+.+||+.|..|.|.+.+.|.+|++.|+|++|||||||||||+|+||..++.
T Consensus 232 ~~~~RKKRcPYTK~QtlELEkEFlfN~YitkeKR~ElSr~lNLTeRQVKIWFQNRRMK~KK~~re~ 297 (308)
T KOG0487|consen 232 ARRGRKKRCPYTKHQTLELEKEFLFNMYITKEKRLELSRTLNLTERQVKIWFQNRRMKEKKVNREN 297 (308)
T ss_pred ccccccccCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccchhheeeeehhhhhHHhhhhhhh
Confidence 356677888999999999999999999999999999999999999999999999999999976543
No 8
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=99.53 E-value=3.4e-15 Score=144.58 Aligned_cols=64 Identities=30% Similarity=0.446 Sum_probs=60.9
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERH 120 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 120 (673)
+.||.||.||.+|+..||..|+.+.|....+|++||+.|+|++.||||||||||+|.||++.+.
T Consensus 101 ~~kr~RT~ft~~Ql~~LE~~F~~~~Yvvg~eR~~LA~~L~LsetQVkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 101 RPKRIRTAFTPEQLLKLEHAFEGNQYVVGAERKQLAQSLSLSETQVKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred CCCccccccCHHHHHHHHHHHhcCCeeechHHHHHHHHcCCChhHhhhhhhhhhHHHHHHHHHh
Confidence 6788899999999999999999999999999999999999999999999999999999987665
No 9
>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only]
Probab=99.53 E-value=1.4e-15 Score=158.38 Aligned_cols=64 Identities=28% Similarity=0.433 Sum_probs=59.7
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHER 119 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 119 (673)
.+.||.|+.||..|+.+||+.|+.++|.+..+|.+||..|.|+++||||||||||+||||..+.
T Consensus 157 ~~~kR~RtayT~~QllELEkEFhfN~YLtR~RRiEiA~~L~LtErQIKIWFQNRRMK~Kk~~k~ 220 (261)
T KOG0489|consen 157 GKSKRRRTAFTRYQLLELEKEFHFNKYLTRSRRIEIAHALNLTERQIKIWFQNRRMKWKKENKA 220 (261)
T ss_pred CCCCCCCcccchhhhhhhhhhhccccccchHHHHHHHhhcchhHHHHHHHHHHHHHHHHHhhcc
Confidence 3468889999999999999999999999999999999999999999999999999999996543
No 10
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only]
Probab=99.52 E-value=1.2e-14 Score=147.16 Aligned_cols=72 Identities=31% Similarity=0.475 Sum_probs=64.4
Q ss_pred Cccc-ccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHHHHHHHHHHh
Q 045292 58 KRKR-YHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENQILKAEN 129 (673)
Q Consensus 58 krR~-RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en 129 (673)
|||. ||.||..|+..||+.|++.+||+...|+-||-++.|.+.+|+|||||||+||||..++.-.....+|+
T Consensus 140 kRRh~RTiFT~~Qle~LEkaFkeaHYPDv~Are~la~ktelpEDRIqVWfQNRRAKWRk~Ek~wg~sT~maey 212 (332)
T KOG0494|consen 140 KRRHFRTIFTSYQLEELEKAFKEAHYPDVYAREMLADKTELPEDRIQVWFQNRRAKWRKTEKRWGGSTIMAEY 212 (332)
T ss_pred ccccccchhhHHHHHHHHHHHhhccCccHHHHHHHhhhccCchhhhhHHhhhhhHHhhhhhhhcCcchhhhhh
Confidence 4444 88999999999999999999999999999999999999999999999999999998887666555554
No 11
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.51 E-value=3.3e-13 Score=133.99 Aligned_cols=99 Identities=44% Similarity=0.706 Sum_probs=90.6
Q ss_pred CCccCceeEEEEeeeecCCCeEEEEEEecCCCCC---CCCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccch
Q 045292 311 PLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRP---SPTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYK 387 (673)
Q Consensus 311 pLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~---~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~r 387 (673)
| ++.|||.++|++++.++|.|+|+..|++.-.. ..++|+..++||++|+++++|.|+|||+.|++..-+..+-+.+
T Consensus 104 p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn 182 (206)
T smart00234 104 P-VSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGNGPSKVTWVSHADLKGWLPHWLVR 182 (206)
T ss_pred c-CCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCCCCeEEEEEEEEecCCCccceeeh
Confidence 5 55699999999999999999999999975431 2679999999999999999999999999999999997788999
Q ss_pred hhhcchhhHHHHHHHHHHHHHHH
Q 045292 388 PLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 388 pl~~sg~afga~rwla~Lqr~ce 410 (673)
.++.++....+++|.+.|+++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 183 SLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999986
No 12
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription]
Probab=99.50 E-value=2.2e-14 Score=143.67 Aligned_cols=64 Identities=31% Similarity=0.447 Sum_probs=60.4
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
.||.||.||.|+.-|+..|.+.|++++|+-..+|.+||..|||+..||||||||||.|.||..+
T Consensus 119 ~KK~RKPRTIYSS~QLqaL~rRFQkTQYLALPERAeLAAsLGLTQTQVKIWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 119 GKKVRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLKK 182 (245)
T ss_pred cccccCCcccccHHHHHHHHHHHhhcchhcCcHHHHHHHHhCCchhHhhhhhhhhHHHHHHHHh
Confidence 4677888999999999999999999999999999999999999999999999999999999654
No 13
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription]
Probab=99.47 E-value=1.1e-14 Score=129.49 Aligned_cols=65 Identities=29% Similarity=0.543 Sum_probs=60.9
Q ss_pred CCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 54 SQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 54 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
.++|+||-|+.||..|+.+||+.|.+.+||+.-.|++||.++.|++..|||||||||+|.+|+.+
T Consensus 13 ekrKQRRIRTTFTS~QLkELErvF~ETHYPDIYTREEiA~kidLTEARVQVWFQNRRAKfRKQEr 77 (125)
T KOG0484|consen 13 EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREEIALKIDLTEARVQVWFQNRRAKFRKQER 77 (125)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHhhcCCcchhHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHH
Confidence 35778889999999999999999999999999999999999999999999999999999998643
No 14
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only]
Probab=99.46 E-value=5.5e-14 Score=138.66 Aligned_cols=63 Identities=37% Similarity=0.515 Sum_probs=59.3
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
+..||.|+.||..|+..||+.|++.+|.+..+|.+++..|.|++.||||||||||+|.||.++
T Consensus 142 k~nRkPRtPFTtqQLlaLErkfrekqYLSiaEraefSsSL~LTeTqVKIWFQNRRAKaKRlQe 204 (246)
T KOG0492|consen 142 KPNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSSSLELTETQVKIWFQNRRAKAKRLQE 204 (246)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhHhhhhhHHHHHhhhhhhhhhhhheehhhhhhhHHHHHHHH
Confidence 446788999999999999999999999999999999999999999999999999999999654
No 15
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription]
Probab=99.44 E-value=3.1e-14 Score=144.88 Aligned_cols=65 Identities=31% Similarity=0.437 Sum_probs=59.4
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERH 120 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 120 (673)
|.|-|-|..+|..|..+||+.|..++|....++.+||..|||++|||||||||||+|+||.++++
T Consensus 197 RTkDKYRvVYTDhQRLELEKEfh~SryITirRKSELA~~LgLsERQVKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 197 RTKDKYRVVYTDHQRLELEKEFHTSRYITIRRKSELAATLGLSERQVKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred ecccceeEEecchhhhhhhhhhccccceeeehhHHHHHhhCccHhhhhHhhhhhhHHHHHHHHHH
Confidence 34556678899999999999999999999999999999999999999999999999999976654
No 16
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=99.42 E-value=5.9e-14 Score=112.74 Aligned_cols=57 Identities=42% Similarity=0.789 Sum_probs=54.7
Q ss_pred cccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
||+|+.||.+|+..||..|..++||+..++..||.++||++.||+.||+|||+++|+
T Consensus 1 kr~r~~~t~~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~V~~WF~nrR~k~kk 57 (57)
T PF00046_consen 1 KRKRTRFTKEQLKVLEEYFQENPYPSKEEREELAKELGLTERQVKNWFQNRRRKEKK 57 (57)
T ss_dssp SSSSSSSSHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHhccccccccccccccccccccccccCHHHhHHHhCc
Confidence 567889999999999999999999999999999999999999999999999999986
No 17
>KOG2251 consensus Homeobox transcription factor [Transcription]
Probab=99.41 E-value=1.3e-13 Score=137.66 Aligned_cols=68 Identities=28% Similarity=0.546 Sum_probs=63.8
Q ss_pred CCCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHH
Q 045292 53 PSQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERH 120 (673)
Q Consensus 53 ~~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 120 (673)
...||.||.||+|+..|+++||+.|.+..||+...|++||.+|+|.+.+|||||+|||+|+|+++..+
T Consensus 32 ~~pRkqRRERTtFtr~QlevLe~LF~kTqYPDv~~rEelAlklnLpeSrVqVWFKNRRAK~r~qq~qq 99 (228)
T KOG2251|consen 32 SGPRKQRRERTTFTRKQLEVLEALFAKTQYPDVFMREELALKLNLPESRVQVWFKNRRAKCRRQQQQQ 99 (228)
T ss_pred ccchhcccccceecHHHHHHHHHHHHhhcCccHHHHHHHHHHhCCchhhhhhhhccccchhhHhhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999976543
No 18
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=99.33 E-value=6.4e-13 Score=134.80 Aligned_cols=59 Identities=37% Similarity=0.633 Sum_probs=55.9
Q ss_pred cccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
||.|+.||.+|++.|...|++++|.....|++||.+|+|.+.||||||||+|+|.||..
T Consensus 247 KRPRTAFtaeQL~RLK~EF~enRYlTEqRRQ~La~ELgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 247 KRPRTAFTAEQLQRLKAEFQENRYLTEQRRQELAQELGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred cCccccccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcCHHHhhHHhhhhhhhhhhcc
Confidence 45688999999999999999999999999999999999999999999999999999853
No 19
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=99.27 E-value=2.8e-12 Score=132.56 Aligned_cols=62 Identities=31% Similarity=0.387 Sum_probs=58.5
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
.-||-||.||.+||..||+.|-+..|-+.+.|.+||..|+|++..|||||||||+|+|||..
T Consensus 180 qmRRYRTAFTReQIaRLEKEFyrENYVSRprRcELAAaLNLPEtTIKVWFQNRRMKDKRQRl 241 (408)
T KOG0844|consen 180 QMRRYRTAFTREQIARLEKEFYRENYVSRPRRCELAAALNLPETTIKVWFQNRRMKDKRQRL 241 (408)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhccccCchhhhHHHhhCCCcceeehhhhhchhhhhhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999743
No 20
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription]
Probab=99.26 E-value=4.9e-12 Score=131.64 Aligned_cols=60 Identities=30% Similarity=0.551 Sum_probs=58.0
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
|+||.|+.||..|+.+||..|+++.||+...|++||...+|++..|++||.|||+||+|.
T Consensus 111 KqrrQrthFtSqqlqele~tF~rNrypdMstrEEIavwtNlTE~rvrvwfknrrakwrkr 170 (351)
T KOG0486|consen 111 KQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 170 (351)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccCCccchhhHHHhhccccchhhhhhcccchhhhhhh
Confidence 678889999999999999999999999999999999999999999999999999999984
No 21
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription]
Probab=99.24 E-value=3.1e-12 Score=137.38 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=58.9
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
+.|||||||.++...+..||+.|.+|++|+..++.+||.+|+|++..|+|||+|||.|+||.
T Consensus 291 ~~RkRKKRTSie~~vr~aLE~~F~~npKPt~qEIt~iA~~L~leKEVVRVWFCNRRQkeKR~ 352 (398)
T KOG3802|consen 291 QSRKRKKRTSIEVNVRGALEKHFLKNPKPTSQEITHIAESLQLEKEVVRVWFCNRRQKEKRI 352 (398)
T ss_pred cccccccccceeHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccceEEEEeeccccccccC
Confidence 34788889999999999999999999999999999999999999999999999999999984
No 22
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=99.24 E-value=3e-12 Score=101.97 Aligned_cols=55 Identities=40% Similarity=0.719 Sum_probs=51.6
Q ss_pred ccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHH
Q 045292 60 KRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114 (673)
Q Consensus 60 R~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 114 (673)
+.|++++++|+..||..|..++||+..++.+||.++||+..||+.||+|||++.|
T Consensus 2 k~r~~~~~~~~~~L~~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~ 56 (56)
T smart00389 2 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAAKLGLSERQVKVWFQNRRAKWK 56 (56)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHhHHHHhhccC
Confidence 4566799999999999999999999999999999999999999999999998754
No 23
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=99.23 E-value=3.9e-12 Score=101.96 Aligned_cols=57 Identities=42% Similarity=0.778 Sum_probs=53.6
Q ss_pred ccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 60 KRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 60 R~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
+++..++.+|+..||+.|..++||+..++..||.++||+++||+.||+|||.+.|+.
T Consensus 2 ~~r~~~~~~~~~~Le~~f~~~~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~~~~~~ 58 (59)
T cd00086 2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58 (59)
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcc
Confidence 456689999999999999999999999999999999999999999999999998863
No 24
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=99.23 E-value=4e-12 Score=122.97 Aligned_cols=64 Identities=33% Similarity=0.535 Sum_probs=58.5
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHER 119 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 119 (673)
.+.+++|+|.|.+|+.+|++.|+.++||+...|.+|+..++|+++-||+||||||++.|++...
T Consensus 49 ~~~~~~r~R~t~~Q~~vL~~~F~i~p~Ps~~~r~~L~~~lnm~~ksVqIWFQNkR~~~k~~~~~ 112 (156)
T COG5576 49 SPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRSG 112 (156)
T ss_pred CcCcccceechHHHHHHHHHHhccCCCCCHHHHHHHHHhcCCChhhhhhhhchHHHHHHHhccc
Confidence 3446677789999999999999999999999999999999999999999999999999987554
No 25
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=99.23 E-value=1.2e-11 Score=100.79 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=50.6
Q ss_pred CcccccccChhHHHHHHHhHhcCCC----CChHHHHHHHHHhCCCcccEEeecccch
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPH----PDDKQRKELSRELGLEPLQVKFWFQNKR 110 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~----Ps~~~r~~LA~~LgLs~rQVkvWFQNRR 110 (673)
+||.||.||++|+..||..|..++| |+...+.+||.++||++++||+||||-+
T Consensus 1 ~kR~RT~Ft~~Q~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vvKVWfqN~k 57 (58)
T TIGR01565 1 KKRRRTKFTAEQKEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVFKVWMHNNK 57 (58)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHeeeecccCC
Confidence 4788999999999999999999999 9999999999999999999999999964
No 26
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only]
Probab=99.19 E-value=2.5e-12 Score=123.02 Aligned_cols=64 Identities=31% Similarity=0.464 Sum_probs=59.4
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERH 120 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 120 (673)
+++|-|+.|+..|+..||+.|+..+|.+..+|.+||..|+|+++|||.||||||+|.||.+++.
T Consensus 99 ~r~K~Rtvfs~~ql~~l~~rFe~QrYLS~~e~~ELan~L~LS~~QVKTWFQNrRMK~Kk~~r~~ 162 (194)
T KOG0491|consen 99 RRRKARTVFSDPQLSGLEKRFERQRYLSTPERQELANALSLSETQVKTWFQNRRMKHKKQQRNN 162 (194)
T ss_pred HhhhhcccccCccccccHHHHhhhhhcccHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567789999999999999999999999999999999999999999999999999999976543
No 27
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=99.12 E-value=5.2e-11 Score=122.54 Aligned_cols=72 Identities=24% Similarity=0.413 Sum_probs=65.5
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHHHHHHHHHHh
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENQILKAEN 129 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en 129 (673)
.||.|+.+|..|++.|...|+..++|....|++|+.++||..|.|||||||||+|+||.++..-..++-+-.
T Consensus 167 nKRPRTTItAKqLETLK~AYn~SpKPARHVREQLsseTGLDMRVVQVWFQNRRAKEKRLKKDAGR~RWgqyf 238 (383)
T KOG4577|consen 167 NKRPRTTITAKQLETLKQAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKRLKKDAGRTRWGQYF 238 (383)
T ss_pred cCCCcceeeHHHHHHHHHHhcCCCchhHHHHHHhhhccCcceeehhhhhhhhhHHHHhhhhhcchhHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999988776665665544
No 28
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=99.05 E-value=4.7e-11 Score=118.85 Aligned_cols=63 Identities=30% Similarity=0.508 Sum_probs=57.9
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
.++|..|..|+..|+..||+.|++.+|+-..+|.+||..+|+++.||+|||||||+||||+..
T Consensus 165 G~rk~srPTf~g~qi~~le~~feqtkylaG~~ra~lA~~lgmteSqvkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 165 GQRKQSRPTFTGHQIYQLERKFEQTKYLAGADRAQLAQELNMTESQVKVWFQNRRTKWRKKHA 227 (288)
T ss_pred ccccccCCCccchhhhhhhhhhhhhhcccchhHHHhhccccccHHHHHHHHhcchhhhhhhhc
Confidence 345666778999999999999999999999999999999999999999999999999999653
No 29
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.90 E-value=2.3e-08 Score=96.75 Aligned_cols=104 Identities=25% Similarity=0.362 Sum_probs=88.0
Q ss_pred eeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCC--CCC-CCcceeecCCcceEEecCCCceEEEEEEee
Q 045292 299 LQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNL--RPS-PTSKCRRRPSGCLIQELPNGYSKVIWVEHV 375 (673)
Q Consensus 299 lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~--~~~-~~~~~~~~PSGclIq~~~nG~skVtwVeH~ 375 (673)
..++|..+..|.| +++|||.++|++.+.++|.++++-.|+|.- ... .++|++.+++|++|+++++|.|+||++-|+
T Consensus 84 ~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~~~~~vt~~~~~ 162 (193)
T cd00177 84 TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDPGKTKVTYVLQV 162 (193)
T ss_pred eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCCCCEEEEEEEee
Confidence 6889999999999 999999999999999999999999999873 222 679999999999999999999999999999
Q ss_pred eecCccccccchhhhcchhhHHHHHHHHHHHH
Q 045292 376 EVDDRSVHNIYKPLVNSGLAFGAKRWVATLDR 407 (673)
Q Consensus 376 e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr 407 (673)
+..-+.. ..++++.+.-.+..++..++.
T Consensus 163 D~~g~iP----~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 163 DPKGSIP----KSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred CCCCCcc----HHHHHhhhhhccHHHHHHHHH
Confidence 9886533 455666666777777776644
No 30
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=98.85 E-value=1.7e-09 Score=109.37 Aligned_cols=63 Identities=27% Similarity=0.393 Sum_probs=59.5
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
..++|+.|+.|+..|+++||+.|++.+||+...|+.||..+++++..|++||||||+||+++.
T Consensus 57 ~~~~rr~rt~~~~~ql~~ler~f~~~h~Pd~~~r~~la~~~~~~e~rVqvwFqnrrak~r~~~ 119 (235)
T KOG0490|consen 57 KFSKRCARCKFTISQLDELERAFEKVHLPCFACRECLALLLTGDEFRVQVWFQNRRAKDRKEE 119 (235)
T ss_pred hccccccCCCCCcCHHHHHHHhhcCCCcCccchHHHHhhcCCCCeeeeehhhhhhcHhhhhhh
Confidence 456788899999999999999999999999999999999999999999999999999999864
No 31
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.72 E-value=3.1e-07 Score=93.34 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=97.4
Q ss_pred eeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCC-C--CCCcceeecCCcceEEecCCCceEEEEEEee
Q 045292 299 LQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR-P--SPTSKCRRRPSGCLIQELPNGYSKVIWVEHV 375 (673)
Q Consensus 299 lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~-~--~~~~~~~~~PSGclIq~~~nG~skVtwVeH~ 375 (673)
..++|..+..|-| |..|||.++|..+..+ |..+|+..|++.-. | ..++|.....+|++|++.+++.|+|||+-|+
T Consensus 93 ~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~~~t~vt~~~~~ 170 (222)
T cd08871 93 NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGPKGCTLTYVTQN 170 (222)
T ss_pred CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCCCCEEEEEEEec
Confidence 3788988888988 8999999999998876 88889999987431 1 2679999999999999999999999999999
Q ss_pred eecCccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhhccCCC
Q 045292 376 EVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERLASSMANNIP 421 (673)
Q Consensus 376 e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~la~~~~~~~p 421 (673)
+..-+ +|. -+++....-++-.++..|+++|+.....++..-|
T Consensus 171 Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~~ 212 (222)
T cd08871 171 DPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPEWKAKNNP 212 (222)
T ss_pred CCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 98765 443 3466667777889999999999999888776655
No 32
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.67 E-value=4.5e-07 Score=91.30 Aligned_cols=159 Identities=16% Similarity=0.237 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccc-----c--hhhhhccccc--ceeeee-----------------------------E
Q 045292 242 IVELAVAAMEEFLRMAQAGDPLWT-----D--QNQWSSVFCG--IVSRAM-----------------------------T 283 (673)
Q Consensus 242 ~~~lA~~Am~El~~la~~~~plW~-----D--~~~w~~~Fp~--ivarA~-----------------------------t 283 (673)
...+++.|++|++.+.. ++-|- | ..-|+...|+ .+.||. .
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~i~i~~r~~~~~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~ 83 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWGDVVYSRNVPGVGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE 83 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCCCEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHcCccccceecCcccc
Confidence 46789999999999954 55897 2 1234443443 233442 2
Q ss_pred eEEeecccCCCCCCceeeeehhhccc-CCCccCceeEEEEeeeecCCCeEEEEEEecCCC-CC--CCCcceeecCCcceE
Q 045292 284 IEVLSTGVAGNYNGALQVMTAEFQVP-SPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNL-RP--SPTSKCRRRPSGCLI 359 (673)
Q Consensus 284 ~~vis~g~~g~~~G~lqlm~ael~~~-SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~-~~--~~~~~~~~~PSGclI 359 (673)
.++|..-. +...++|.-+..+ .++|..|||.++|+.++.+ |.++|+..|++.- .| ..++|+...++|++|
T Consensus 84 ~~~i~~~d-----~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i 157 (208)
T cd08868 84 CKIIQVID-----DNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWIL 157 (208)
T ss_pred eEEEEEec-----CCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEE
Confidence 22333221 2223455333322 3589999999999999866 6789999998732 22 267999999999999
Q ss_pred EecCC--CceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 045292 360 QELPN--GYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERL 412 (673)
Q Consensus 360 q~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~l 412 (673)
+++++ +.|+|+|+-|++..-+ +|.- ++++.+.-+.-.|++.|+++|+.|
T Consensus 158 ~p~~~~~~~t~v~~~~~~Dp~G~-iP~~---lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 158 RPLPNNPNKCNFTWLLNTDLKGW-LPQY---LVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred EECCCCCCceEEEEEEEECCCCC-Ccce---eeehhhHHHHHHHHHHHHHHHhhC
Confidence 99987 6899999999987755 4432 378888889999999999998753
No 33
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription]
Probab=98.58 E-value=2.7e-08 Score=108.24 Aligned_cols=65 Identities=32% Similarity=0.587 Sum_probs=60.1
Q ss_pred CCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 54 SQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 54 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
.+++.+|.|+.|+..|+..||+.|+.++||+...|++||+++++++..|++||+|||++++|+..
T Consensus 172 ~~~~~rr~rtsft~~Q~~~le~~f~rt~yP~i~~Re~La~~i~l~e~riqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 172 LQRGGRRNRTSFSPSQLEALEECFQRTPYPDIVGRETLAKETGLPEPRVQVWFQNRRAKWRRQHR 236 (354)
T ss_pred ccccccccccccccchHHHHHHHhcCCCCCchhhHHHHhhhccCCchHHHHHHhhhhhhhhhccc
Confidence 35667777899999999999999999999999999999999999999999999999999998643
No 34
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription]
Probab=98.58 E-value=3.6e-08 Score=101.97 Aligned_cols=61 Identities=23% Similarity=0.465 Sum_probs=57.0
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
..|||+|+.+.....+.||++|..++.|+.+.+..+|++|.|.+..|+|||+|.|.|.||.
T Consensus 307 ~ekKRKRTSIAAPEKRsLEayFavQPRPS~EkIAaIAekLDLKKNVVRVWFCNQRQKQKRm 367 (385)
T KOG1168|consen 307 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 367 (385)
T ss_pred cccccccccccCcccccHHHHhccCCCCchhHHHHHHHhhhhhhceEEEEeeccHHHHHHh
Confidence 3467888999999999999999999999999999999999999999999999999999884
No 35
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.57 E-value=1.4e-06 Score=87.57 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=79.0
Q ss_pred CCCccCceeEEEEeeeecCCCeEEEEEEecCCCC--CC-CCcceeecCCcceEEecC--CCceEEEEEEeeeecCccccc
Q 045292 310 SPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR--PS-PTSKCRRRPSGCLIQELP--NGYSKVIWVEHVEVDDRSVHN 384 (673)
Q Consensus 310 SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~--~~-~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~ 384 (673)
.++|.+|||.++||.++.++|.++++-.|++.-. +. .++|+...++|++|++.+ ++.|+|||+-|++..- .+|
T Consensus 105 ~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG-~iP- 182 (206)
T cd08867 105 MGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRG-MIP- 182 (206)
T ss_pred cCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCC-CCc-
Confidence 3579999999999999999999999999995332 22 679999999999999986 5789999999998764 333
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHH
Q 045292 385 IYKPLVNSGLAFGAKRWVATLDRQC 409 (673)
Q Consensus 385 l~rpl~~sg~afga~rwla~Lqr~c 409 (673)
+-++++.++=+.--|+..|++|.
T Consensus 183 --~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 183 --QSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred --HHHHHhhhhhhHHHHHHHHHHhc
Confidence 45677777777888999998774
No 36
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.47 E-value=1.4e-06 Score=88.28 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=68.5
Q ss_pred eeeeehhhcccCCCccCceeEEEEeeee-cCCCeEEEEEEecCCCCC--CCCcceeecCCcceEEecCCCceEEEEEEee
Q 045292 299 LQVMTAEFQVPSPLVPTRENYFVRYCKQ-HSDGTWAVVDVSLDNLRP--SPTSKCRRRPSGCLIQELPNGYSKVIWVEHV 375 (673)
Q Consensus 299 lqlm~ael~~~SpLvp~Re~~fLRyck~-~~~g~w~VvDvSld~~~~--~~~~~~~~~PSGclIq~~~nG~skVtwVeH~ 375 (673)
..+.|--+.-|-|+ |.|||+.+|+-++ +++|..+|+..|++.... ..+||+..+-+||+|+|+++|.|+||++-|+
T Consensus 95 tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~~g~trvt~i~~v 173 (205)
T cd08909 95 TEVYQYVLNCMAPH-PSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCGSGKSRLTHICRV 173 (205)
T ss_pred cEEEEEEeecCCCC-CCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECCCCCEEEEEEEEe
Confidence 46677777666675 9999999999765 579999999999987643 3679999999999999999999999999999
Q ss_pred eecCc
Q 045292 376 EVDDR 380 (673)
Q Consensus 376 e~d~~ 380 (673)
+..-+
T Consensus 174 DpkG~ 178 (205)
T cd08909 174 DLKGH 178 (205)
T ss_pred cCCCC
Confidence 87543
No 37
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=98.45 E-value=2.3e-06 Score=86.74 Aligned_cols=132 Identities=18% Similarity=0.245 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCccc-------chhhhh--cccccceeeee----------------------------EeE
Q 045292 243 VELAVAAMEEFLRMAQAGDPLWT-------DQNQWS--SVFCGIVSRAM----------------------------TIE 285 (673)
Q Consensus 243 ~~lA~~Am~El~~la~~~~plW~-------D~~~w~--~~Fp~ivarA~----------------------------t~~ 285 (673)
..|+++|++|++++-+ +.-.|- ....|. .-|.+=+-|+. ..+
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~k~~~~~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~ 82 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVVKTSKKITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYK 82 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEEecCCceEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhccccccee
Confidence 5789999999999976 567897 111122 12333333332 222
Q ss_pred EeecccCCCCCCceeeeehhhc-ccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCC--CC-CCcceeecCCcceEEe
Q 045292 286 VLSTGVAGNYNGALQVMTAEFQ-VPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR--PS-PTSKCRRRPSGCLIQE 361 (673)
Q Consensus 286 vis~g~~g~~~G~lqlm~ael~-~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~--~~-~~~~~~~~PSGclIq~ 361 (673)
+|..- ++...+.|.-++ .+-++|-+|||..+||.++.++|.++|+..|++.-. +. .++|++..|+||+|+|
T Consensus 83 iie~I-----d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~p 157 (204)
T cd08904 83 MLQRI-----DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSP 157 (204)
T ss_pred eEEEe-----CCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEE
Confidence 33321 122245665554 455789999999999999999999999999997543 22 6899999999999999
Q ss_pred cCCC--ceEEEEEEeeeecCc
Q 045292 362 LPNG--YSKVIWVEHVEVDDR 380 (673)
Q Consensus 362 ~~nG--~skVtwVeH~e~d~~ 380 (673)
.+++ +|+++|+-++++.-+
T Consensus 158 l~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 158 LPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred CCCCCCceEEEEEEEeCCCCC
Confidence 9874 899999999877644
No 38
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.29 E-value=7.3e-06 Score=82.27 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=68.6
Q ss_pred eeeehhhcccCCCccCceeEEEEeeee-cCCCeEEEEEEecCC--CCCCCCcceeecCCcceEEecCCCceEEEEEEeee
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQ-HSDGTWAVVDVSLDN--LRPSPTSKCRRRPSGCLIQELPNGYSKVIWVEHVE 376 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~-~~~g~w~VvDvSld~--~~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e 376 (673)
.+.|..+..|-| +++|||..+|+++. .++|..+|.=.|++. ..|..++|++.+++|++|++.++|.|+||++-|+|
T Consensus 88 ~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~~~~t~vty~~~~D 166 (197)
T cd08869 88 EVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCGSGKSRVTHICRVD 166 (197)
T ss_pred EEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECCCCCeEEEEEEEEC
Confidence 577877777777 59999999998875 678899999999953 33338899999999999999999999999999998
Q ss_pred ecCccccc
Q 045292 377 VDDRSVHN 384 (673)
Q Consensus 377 ~d~~~v~~ 384 (673)
.-- .+|.
T Consensus 167 p~G-~iP~ 173 (197)
T cd08869 167 LRG-RSPE 173 (197)
T ss_pred CCC-CCCc
Confidence 643 3444
No 39
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=98.25 E-value=6e-07 Score=92.76 Aligned_cols=51 Identities=25% Similarity=0.569 Sum_probs=46.8
Q ss_pred cChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 65 HTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 65 fT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
|...-...|..+|.+++||+..++.+||+.+||+..||-.||.|||+|+|.
T Consensus 183 FKekSR~~LrewY~~~~YPsp~eKReLA~aTgLt~tQVsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 183 FKEKSRSLLREWYLQNPYPSPREKRELAEATGLTITQVSNWFKNRRQRDRA 233 (304)
T ss_pred hhHhhHHHHHHHHhcCCCCChHHHHHHHHHhCCchhhhhhhhhhhhhhhhh
Confidence 444557899999999999999999999999999999999999999999984
No 40
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.14 E-value=2.8e-05 Score=78.86 Aligned_cols=157 Identities=14% Similarity=0.213 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccc----c---hhhhhcccccc--eeeee-----------------------------E
Q 045292 242 IVELAVAAMEEFLRMAQAGDPLWT----D---QNQWSSVFCGI--VSRAM-----------------------------T 283 (673)
Q Consensus 242 ~~~lA~~Am~El~~la~~~~plW~----D---~~~w~~~Fp~i--varA~-----------------------------t 283 (673)
...++.+|++|++++.+ .+..|- + -.-|+.-+|+. +-|+. -
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~ 84 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAENGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKE 84 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecCCCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceecccchH
Confidence 36889999999999985 666897 1 12345555533 22332 1
Q ss_pred eEEeecccCCCCCCceeeeehhhcccCC--CccCceeEEEEeeeecCCCeEEEEEEecCCCC--CC-CCcceeecCCcce
Q 045292 284 IEVLSTGVAGNYNGALQVMTAEFQVPSP--LVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR--PS-PTSKCRRRPSGCL 358 (673)
Q Consensus 284 ~~vis~g~~g~~~G~lqlm~ael~~~Sp--Lvp~Re~~fLRyck~~~~g~w~VvDvSld~~~--~~-~~~~~~~~PSGcl 358 (673)
.++|.... ..--++|. ..+|.| +|..|||..+|+.++.+++. +++..|.+.-. +. .++|++..++|++
T Consensus 85 ~~vl~~id-----~~~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~~-~~~~~s~~~~~~P~~~~~VR~~~~~~~w~ 157 (209)
T cd08905 85 VKILQRIG-----KDTLITHE-VAAETAGNVVGPRDFVSVRCAKRRGSTC-VLAGMATHFGLMPEQKGFIRAENGPTCIV 157 (209)
T ss_pred HHHHhhcC-----CCceEEEE-EeccCCCCccCccceEEEEEEEEcCCcE-EEEEEeecCCCCCCCCCeEEEEeeccEEE
Confidence 11222111 11134564 557766 79999999999999986654 45566754321 22 6899999999999
Q ss_pred EEecCC--CceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 359 IQELPN--GYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 359 Iq~~~n--G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
|+++++ |.|+|+|+-|+|..-+ +|. .|++..++=..--++..|+++.+
T Consensus 158 l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 158 LRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred EEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 999988 9999999999987765 443 45777777777788888887754
No 41
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.12 E-value=6.4e-05 Score=76.17 Aligned_cols=99 Identities=17% Similarity=0.312 Sum_probs=74.5
Q ss_pred cccCC---CccCceeEEEEeeeecCCCeEEEEEEecCC-CCC--CCCcceeecCCcceEEecC--CCceEEEEEEeeeec
Q 045292 307 QVPSP---LVPTRENYFVRYCKQHSDGTWAVVDVSLDN-LRP--SPTSKCRRRPSGCLIQELP--NGYSKVIWVEHVEVD 378 (673)
Q Consensus 307 ~~~Sp---Lvp~Re~~fLRyck~~~~g~w~VvDvSld~-~~~--~~~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d 378 (673)
..|.| +|.+|||..+|+.++.++|.++|.-.|... .-| ..++|++..|+|++|.+.+ ++.|+|+|+-|++..
T Consensus 99 ~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk 178 (208)
T cd08903 99 VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPDKTQLVSFFQTDLS 178 (208)
T ss_pred ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEEeccC
Confidence 44555 699999999999999999998887778765 222 2789999999999999995 458999999888764
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHH
Q 045292 379 DRSVHNIYKPLVNSGLAFGAKRWVATLDRQC 409 (673)
Q Consensus 379 ~~~v~~l~rpl~~sg~afga~rwla~Lqr~c 409 (673)
..+| +.++++.++=+..-.+..|+++.
T Consensus 179 -G~iP---~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 179 -GYLP---QTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred -CCcC---HHHHHHHhhHHHHHHHHHHHHHH
Confidence 2455 34565544445556677776654
No 42
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=97.93 E-value=0.00014 Score=73.83 Aligned_cols=104 Identities=15% Similarity=0.281 Sum_probs=76.9
Q ss_pred eeehhhcccCC--CccCceeEEEEeeeecCCCeEEEEEEecCCC-CC-C-CCcceeecCCcceEEec--CCCceEEEEEE
Q 045292 301 VMTAEFQVPSP--LVPTRENYFVRYCKQHSDGTWAVVDVSLDNL-RP-S-PTSKCRRRPSGCLIQEL--PNGYSKVIWVE 373 (673)
Q Consensus 301 lm~ael~~~Sp--Lvp~Re~~fLRyck~~~~g~w~VvDvSld~~-~~-~-~~~~~~~~PSGclIq~~--~nG~skVtwVe 373 (673)
+.| +.-.|.+ .|..|||-.+|+.++.+++ ++++..|++.- .| . .++|.+..++|++|++. .+|.|+|||+-
T Consensus 97 i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~ 174 (209)
T cd08906 97 VSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWIL 174 (209)
T ss_pred EEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEE
Confidence 345 5555554 6899999999999998888 56777887532 12 2 68999999999999985 57799999999
Q ss_pred eeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 374 HVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 374 H~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
|+|..- .+|. .+++..++=..--.+..|+++.+
T Consensus 175 ~~Dp~G-~lP~---~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 175 NTDLKG-RLPR---YLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred ecCCCC-CCCH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 998765 3432 45666666666667777766544
No 43
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=97.90 E-value=0.00017 Score=72.77 Aligned_cols=161 Identities=15% Similarity=0.207 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCccc------chhhhhc---ccccceeeeeEeE---------Eeeccc-CCCCCCce----
Q 045292 243 VELAVAAMEEFLRMAQAGDPLWT------DQNQWSS---VFCGIVSRAMTIE---------VLSTGV-AGNYNGAL---- 299 (673)
Q Consensus 243 ~~lA~~Am~El~~la~~~~plW~------D~~~w~~---~Fp~ivarA~t~~---------vis~g~-~g~~~G~l---- 299 (673)
..+|.++-+++++--+.++-.|- |..-|.. -|++=+-|+.++= .+.-+. -+.+|..+
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~k~~~~~~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~ 83 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVAKKSKDVTVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMD 83 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEEEeCCCEEEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccchhhhee
Confidence 56787888889987666999997 4444444 6777777774221 111110 00122222
Q ss_pred ---------eee-ehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCCC-CCcceeecCCcceEEecCCC--c
Q 045292 300 ---------QVM-TAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRPS-PTSKCRRRPSGCLIQELPNG--Y 366 (673)
Q Consensus 300 ---------qlm-~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~~-~~~~~~~~PSGclIq~~~nG--~ 366 (673)
.++ |.=.-.+-++|-+|||.-+||+++.++|. +.|=||++.-.+- .++|++..|+||++.|.+|| .
T Consensus 84 Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k 162 (202)
T cd08902 84 IIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSH 162 (202)
T ss_pred HhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCCCeEeecccccEEEEEECCCCCCc
Confidence 122 44444667799999999999999999998 7778998764322 78999999999999999988 6
Q ss_pred eEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHH
Q 045292 367 SKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQ 408 (673)
Q Consensus 367 skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ 408 (673)
|+.||+-++|+.-+ |=+-++++.++=..=-....|+++
T Consensus 163 ~~~t~~lq~DLkG~----LPqsiIdq~~~~~~~~F~~~Lrk~ 200 (202)
T cd08902 163 SLLTGYIQTDLRGM----LPQSAVDTAMASTLVNFYSDLKKA 200 (202)
T ss_pred eEEEEEEEecCCCC----ccHHHHHHHhhHHHHHHHHHHHHh
Confidence 77889999877755 234456555554444445555443
No 44
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription]
Probab=97.78 E-value=1.4e-05 Score=82.29 Aligned_cols=58 Identities=24% Similarity=0.547 Sum_probs=53.3
Q ss_pred cccccccChhHHHHHHHhHh---cCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFK---ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~---~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
+|+|..|+..-.++|..+|. .+|||+...+++||+++|++-.||-.||.|+|-++||.
T Consensus 189 rRKRRNFsK~aTeiLneyF~~h~~nPYPSee~K~eLAkqCnItvsQvsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 189 RRKRRNFSKQATEILNEYFYSHLSNPYPSEEAKEELAKQCNITVSQVSNWFGNKRIRYKKN 249 (334)
T ss_pred HHhhcccchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHcCceehhhccccccceeehhhh
Confidence 45666899999999999995 58999999999999999999999999999999999984
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=97.76 E-value=0.0002 Score=72.68 Aligned_cols=83 Identities=18% Similarity=0.284 Sum_probs=68.3
Q ss_pred eeeehhhcccCCCccCceeEEEEeee-ecCCCeEEEEEEecCCC-CCCCCcceeecCCcceEEecCCCceEEEEEEeeee
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCK-QHSDGTWAVVDVSLDNL-RPSPTSKCRRRPSGCLIQELPNGYSKVIWVEHVEV 377 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck-~~~~g~w~VvDvSld~~-~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~ 377 (673)
.+.|..+..|-| +|.|||.++|-.+ +.++|..+|+-.|++.- .|-.++|++.+-+|++|+++++|.|+||.+-|+|-
T Consensus 96 ~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g~g~t~vtyi~~~DP 174 (204)
T cd08908 96 EIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCGSGKSKLTYMCRIDL 174 (204)
T ss_pred eEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcCceEEEEEeeEEEEEECCCCcEEEEEEEEeCC
Confidence 578888889988 7999999997665 57899999999988643 23346999999999999999999999999999975
Q ss_pred cCccccc
Q 045292 378 DDRSVHN 384 (673)
Q Consensus 378 d~~~v~~ 384 (673)
-- .+|.
T Consensus 175 gG-~iP~ 180 (204)
T cd08908 175 RG-HMPE 180 (204)
T ss_pred CC-CCcH
Confidence 32 3443
No 46
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.72 E-value=0.00047 Score=80.37 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=86.4
Q ss_pred HHHHHHHHHhhcCCCCcccchhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhc--ccCCCccCceeEEEEee
Q 045292 247 VAAMEEFLRMAQAGDPLWTDQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQ--VPSPLVPTRENYFVRYC 324 (673)
Q Consensus 247 ~~Am~El~~la~~~~plW~D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~--~~SpLvp~Re~~fLRyc 324 (673)
-+++=|+++-.....+.| |. . +..++-|+-| +|...++|.-++ .+...+-+|||+++||-
T Consensus 239 pE~Ifd~Vm~~~~~R~eW-D~-----~----~~~~~vIE~I--------D~htdI~Y~~~~~~~~~~~ispRDFV~~Ryw 300 (719)
T PLN00188 239 CEEIFELVMSMDGTRFEW-DC-----S----FQYGSLVEEV--------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYW 300 (719)
T ss_pred HHHHHHHHhccCcccccc-hh-----c----ccceEEEEEe--------cCCeEEEEEEeccccccCccCcceeEEEEEE
Confidence 344445554333355566 32 2 3445555544 355677877775 45567778999999999
Q ss_pred eecCCCeEEEEEEecCCCCC---CCCcceeecCCcceEEecC--C--CceEEEEEEeeeecCccc
Q 045292 325 KQHSDGTWAVVDVSLDNLRP---SPTSKCRRRPSGCLIQELP--N--GYSKVIWVEHVEVDDRSV 382 (673)
Q Consensus 325 k~~~~g~w~VvDvSld~~~~---~~~~~~~~~PSGclIq~~~--n--G~skVtwVeH~e~d~~~v 382 (673)
+..+||+++|+=+|+..-.- ..|+|++..|+||+|.|++ + -.|.|+|+-|++..-|..
T Consensus 301 rr~eDGsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~ 365 (719)
T PLN00188 301 RRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV 365 (719)
T ss_pred EEcCCCcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc
Confidence 99999999999999875431 1689999999999999964 3 379999999999998874
No 47
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=97.58 E-value=1.3e-05 Score=60.94 Aligned_cols=34 Identities=32% Similarity=0.691 Sum_probs=28.9
Q ss_pred cCCCCChHHHHHHHHHhCCCcccEEeecccchhH
Q 045292 79 ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ 112 (673)
Q Consensus 79 ~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK 112 (673)
.+|||+..++.+||+++||+.+||..||-|.|.|
T Consensus 7 ~nPYPs~~ek~~L~~~tgls~~Qi~~WF~NaRrR 40 (40)
T PF05920_consen 7 HNPYPSKEEKEELAKQTGLSRKQISNWFINARRR 40 (40)
T ss_dssp TSGS--HHHHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCCHHHHHHHHHHhHcc
Confidence 4699999999999999999999999999998865
No 48
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=97.46 E-value=0.00062 Score=69.22 Aligned_cols=96 Identities=17% Similarity=0.198 Sum_probs=70.4
Q ss_pred eEeEEeecccCCCCCCceeeeehhhcccCCC-ccCceeEEEEeeeecCCCeEEEEEEecCC-CCC--C-CCcceeecCCc
Q 045292 282 MTIEVLSTGVAGNYNGALQVMTAEFQVPSPL-VPTRENYFVRYCKQHSDGTWAVVDVSLDN-LRP--S-PTSKCRRRPSG 356 (673)
Q Consensus 282 ~t~~vis~g~~g~~~G~lqlm~ael~~~SpL-vp~Re~~fLRyck~~~~g~w~VvDvSld~-~~~--~-~~~~~~~~PSG 356 (673)
.+.+||..-. ....++|.....|=|+ ++.|||..+|-....+++.. |.=.|++. ..| . .++|.+.+++|
T Consensus 78 ~~~~vl~~~~-----~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~v-i~~~SV~~~~~P~~~~~~VR~~~~~~g 151 (205)
T cd08874 78 KTARIHKTFT-----EDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSV-VACQSVYDKSMPEPGRSLVRGEILPSA 151 (205)
T ss_pred hheeeeeecC-----CCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEE-EEEEecccccCCCCCCCeEEeeeEeee
Confidence 5566776433 2335677766655555 39999999996555555554 66688876 433 2 58999999999
Q ss_pred ceEEec---CCCceEEEEEEeeeecCcccc
Q 045292 357 CLIQEL---PNGYSKVIWVEHVEVDDRSVH 383 (673)
Q Consensus 357 clIq~~---~nG~skVtwVeH~e~d~~~v~ 383 (673)
++|+++ ++|.|+||.+-|+|.--..+|
T Consensus 152 w~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 152 WILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred EEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 999999 999999999999997643444
No 49
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.46 E-value=0.00042 Score=70.20 Aligned_cols=70 Identities=20% Similarity=0.263 Sum_probs=59.6
Q ss_pred CCccCceeEEEEeee-ecCCCeEEEEEEecCCCCCC--CCcceeecCCcceEEecCCCceEEEEEEeeeecCc
Q 045292 311 PLVPTRENYFVRYCK-QHSDGTWAVVDVSLDNLRPS--PTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDR 380 (673)
Q Consensus 311 pLvp~Re~~fLRyck-~~~~g~w~VvDvSld~~~~~--~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~ 380 (673)
+.+|+|||.+||.-+ .+..|.-+|+.+|++....- +-+|+--+-|||||++++.|.|+||-+-|++..-+
T Consensus 106 ~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g~g~s~ltyi~rvD~rG~ 178 (205)
T cd08907 106 APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCGMGRSRLTHICRADLRGR 178 (205)
T ss_pred CCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECCCCCeEEEEEEEeCCCCC
Confidence 568999999999864 46788999999999865432 33999999999999999999999999999987544
No 50
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only]
Probab=97.39 E-value=0.00014 Score=73.55 Aligned_cols=67 Identities=30% Similarity=0.662 Sum_probs=60.5
Q ss_pred CCCCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 52 DPSQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 52 ~~~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
.....+.++.|+.++..|+..++..|...++|+...+.+|+..+|++++.+++||||+|++.|+...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~~~~~~~~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 147 GPSNKKPRRPRTTFTENQLEVLETVFRATPKPDADDREQLAEETGLSERVIQVWFQNRRAKLRKHKR 213 (235)
T ss_pred CCCccccCCCccccccchhHhhhhcccCCCCCchhhHHHHHHhcCCChhhhhhhcccHHHHHHhhcc
Confidence 3445667788899999999999999999999999999999999999999999999999999998543
No 51
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription]
Probab=97.31 E-value=0.00015 Score=81.75 Aligned_cols=56 Identities=29% Similarity=0.385 Sum_probs=52.7
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQM 113 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~ 113 (673)
.||.|..||..|.+.|.++|+++++|+....+.|+.+|||...-|..||-|-|.|.
T Consensus 420 ~KKPRlVfTd~QkrTL~aiFke~~RPS~Emq~tIS~qL~L~~sTV~NfFmNaRRRs 475 (558)
T KOG2252|consen 420 TKKPRLVFTDIQKRTLQAIFKENKRPSREMQETISQQLNLELSTVINFFMNARRRS 475 (558)
T ss_pred CCCceeeecHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCcHHHHHHHHHhhhhhc
Confidence 46678999999999999999999999999999999999999999999999988775
No 52
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.27 E-value=0.0085 Score=60.74 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=81.0
Q ss_pred eeeehhhcccCCCccCceeEEE-Eeeeec-CCCeEEEEEEecCCCC------------CC-CCcceeecCCcceEEecCC
Q 045292 300 QVMTAEFQVPSPLVPTRENYFV-RYCKQH-SDGTWAVVDVSLDNLR------------PS-PTSKCRRRPSGCLIQELPN 364 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fL-Ryck~~-~~g~w~VvDvSld~~~------------~~-~~~~~~~~PSGclIq~~~n 364 (673)
++.|..+-+|-| +..||+.+. +.+..+ ++|..+|+=.|++.-. .. .++|.....+|++|+++++
T Consensus 92 ~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~~ 170 (215)
T cd08877 92 KVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPISP 170 (215)
T ss_pred EEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcCC
Confidence 577877777888 888999975 556677 8999999999997322 12 5789999999999999999
Q ss_pred CceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 365 GYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 365 G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
|.|+|+++-|++-.-+-+|.= |++...--.+...+..|++.|+
T Consensus 171 ~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~k~~~ 213 (215)
T cd08877 171 TKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQKAAK 213 (215)
T ss_pred CCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999966332226653 3444455566677777777665
No 53
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=97.10 E-value=0.0061 Score=60.21 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=74.0
Q ss_pred eeeehhhcccCCCccCceeEEEEeeeec-CCCeEEEEEEecCCCCC--CCCcceeecCCcceEEecCCCceEEEEEEeee
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQH-SDGTWAVVDVSLDNLRP--SPTSKCRRRPSGCLIQELPNGYSKVIWVEHVE 376 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~~-~~g~w~VvDvSld~~~~--~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e 376 (673)
.++|..+..|=| +..|||.+.|..... ++|..+|.=.|.+...| ..++|++.+.+|+.|++.++|.|+|+++-|++
T Consensus 87 ~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~d 165 (195)
T cd08876 87 RSVYTVIDLPWP-VKDRDMVLRSTTEQDADDGSVTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYAD 165 (195)
T ss_pred EEEEEEEecccc-cCCceEEEEEEEEEcCCCCEEEEEeecCCccCCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeC
Confidence 456666666555 789999987654433 36777777667654322 26789999999999999999999999999998
Q ss_pred ecCccccccchhhhcchhhHHHHHHHHHHHHHH
Q 045292 377 VDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQC 409 (673)
Q Consensus 377 ~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~c 409 (673)
..-+-..-+.+.+ ..=+...++++|+++|
T Consensus 166 p~g~iP~~lv~~~----~~~~~~~~l~~l~~~~ 194 (195)
T cd08876 166 PGGSIPGWLANAF----AKDAPYNTLENLRKQL 194 (195)
T ss_pred CCCCCCHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 8644333343433 3345668888887654
No 54
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=96.97 E-value=0.0042 Score=62.98 Aligned_cols=106 Identities=17% Similarity=0.296 Sum_probs=83.3
Q ss_pred eeeehhhcccCCCccCceeEEEEeeee-cCCC--eEEEEEEecCCCC-C--CCCcceeecCCcceEEecCCCceEEEEEE
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQ-HSDG--TWAVVDVSLDNLR-P--SPTSKCRRRPSGCLIQELPNGYSKVIWVE 373 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~-~~~g--~w~VvDvSld~~~-~--~~~~~~~~~PSGclIq~~~nG~skVtwVe 373 (673)
.++|..+..|-| +..|||.++|-... ..+| .|+|+..|.+.-. | ..++|+...-+|++|++..++.|+|+++-
T Consensus 94 ~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~~~t~i~~~~ 172 (207)
T cd08910 94 TVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGKKGSKVFMYY 172 (207)
T ss_pred EEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCCCceEEEEEE
Confidence 678999999999 99999999964443 3344 6888888875321 1 26899999999999999988999999999
Q ss_pred eeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 374 HVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 374 H~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
|.+-. ..+|. -+++.-...+...|+..|+..|.
T Consensus 173 ~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 173 FDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred EeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHh
Confidence 98842 24543 25777788899999999988875
No 55
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=96.92 E-value=0.041 Score=55.38 Aligned_cols=174 Identities=20% Similarity=0.229 Sum_probs=103.0
Q ss_pred CCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeeccC
Q 045292 456 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIAN 535 (673)
Q Consensus 456 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~ 535 (673)
..++|.... ..++|+|.+|+..++ . .+..-++..-++.+|+.||+.|.| .|.+||...-. .+.+-.|
T Consensus 17 ~~~~W~~~~--~~~gi~I~~k~~~~~--~---~l~~~K~~~~v~a~~~~v~~~l~d--~r~~Wd~~~~~--~~vie~i-- 83 (197)
T cd08869 17 KSKGWVSVS--SSDHVELAFKKVDDG--H---PLRLWRASTEVEAPPEEVLQRILR--ERHLWDDDLLQ--WKVVETL-- 83 (197)
T ss_pred ccCCceEEe--cCCcEEEEEEeCCCC--C---cEEEEEEEEEeCCCHHHHHHHHHH--HHhccchhhhe--EEEEEEe--
Confidence 467898553 356999999997431 1 234457888889999999999988 68999953211 2333333
Q ss_pred CCCCCceEEEEEeccCCCCC-CceeEEeeeccC-CCCcEEEEe-ecchh-hhhhhhcCCCCCC--CcccCCccEEcCCCC
Q 045292 536 GRDPGNCVSLLRVNSANSSQ-SNMLVLQESCTD-STGSYVIYA-PVDIV-AMNMVLSGGDPDY--VALLPSGFAILPDGP 609 (673)
Q Consensus 536 g~~~gn~vsll~~~~~~~~~-~~~~iLQes~~D-~sgs~vVyA-PvD~~-~~~~vm~G~d~~~--v~lLPSGF~I~Pdg~ 609 (673)
+..+.|--...+...+.. .++.+++-...| ..|++++.. -|+-+ .+ -+.+ +..+++||.|-|.+.
T Consensus 84 --d~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~-------p~g~VR~~~~~~g~~i~p~~~ 154 (197)
T cd08869 84 --DEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPV-------PLGGVRAVVLASRYLIEPCGS 154 (197)
T ss_pred --cCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCC-------CCCCEEEEEEeeeEEEEECCC
Confidence 233444433333332333 355555443433 446665433 23221 00 0122 356889999998542
Q ss_pred CCCCCCccccCCCCceeEEeeehhccCCcccccccchhhhhhhhhhhHHHHHHHHcCC
Q 045292 610 GFNGGGILEVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVMT 667 (673)
Q Consensus 610 ~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~~ 667 (673)
++|.+|--.|+=... .+.-=-+-..+.+++..+++|++.+.|
T Consensus 155 ------------~~t~vty~~~~Dp~G----~iP~wl~N~~~~~~~~~~~~l~~~~~~ 196 (197)
T cd08869 155 ------------GKSRVTHICRVDLRG----RSPEWYNKVYGHLCARELLRIRDSFRQ 196 (197)
T ss_pred ------------CCeEEEEEEEECCCC----CCCceeecchHhHHHHHHHHHHhhccC
Confidence 477787766665432 221112455568999999999998875
No 56
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=96.80 E-value=0.041 Score=56.09 Aligned_cols=175 Identities=19% Similarity=0.342 Sum_probs=101.6
Q ss_pred CCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeeccc-CChhhHhhhhcccCccchhhhhcCCCccceeeecc
Q 045292 456 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIP-VPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIA 534 (673)
Q Consensus 456 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 534 (673)
..++|..... .++|+|..++..+ +.+...++...++ +||+.+|++|.|...|.+||..... .+.+..+
T Consensus 21 ~~~~W~~~~~--~~gi~iy~r~~~~------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e--~~~ie~~- 89 (222)
T cd08871 21 STDGWKLKYN--KNNVKVWTKNPEN------SSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE--SFDICQL- 89 (222)
T ss_pred CCCCcEEEEc--CCCeEEEEeeCCC------CceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce--eEEEEEc-
Confidence 3458996643 4679999988632 3444555666664 9999999999999999999964322 2334343
Q ss_pred CCCCCCceEEEEEeccCC-CCCCceeEEeeeccCCCCcEEEEe-ecchhhhhhhhcCCCCCC--CcccCCccEEcCCCCC
Q 045292 535 NGRDPGNCVSLLRVNSAN-SSQSNMLVLQESCTDSTGSYVIYA-PVDIVAMNMVLSGGDPDY--VALLPSGFAILPDGPG 610 (673)
Q Consensus 535 ~g~~~gn~vsll~~~~~~-~~~~~~~iLQes~~D~sgs~vVyA-PvD~~~~~~vm~G~d~~~--v~lLPSGF~I~Pdg~~ 610 (673)
+.++.|.-...+..- -...+.++++....+. |+++|++ .++-+.+ ...+.+ +..+.+||.|-|.+
T Consensus 90 ---d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~-----P~~~g~VR~~~~~~g~~i~p~~-- 158 (222)
T cd08871 90 ---NPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKY-----PPRKGFVRAISLLTGYLIRPTG-- 158 (222)
T ss_pred ---CCCCEEEEEEeECCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCC-----CCCCCeEEeEEEccEEEEEECC--
Confidence 344556555544322 2334666666655445 7766543 3432211 011122 23567888887743
Q ss_pred CCCCCccccCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 611 FNGGGILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 611 ~~~~~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
.++|.+|.-+|+=... .|..-.+. .+....-.++++++.|+.
T Consensus 159 ----------~~~t~vt~~~~~Dp~G~IP~~lvN~----~~~~~~~~~l~~l~k~~~ 201 (222)
T cd08871 159 ----------PKGCTLTYVTQNDPKGSLPKWVVNK----ATTKLAPKVMKKLHKAAL 201 (222)
T ss_pred ----------CCCEEEEEEEecCCCCCcCHHHHHH----HHHHHhHHHHHHHHHHHH
Confidence 1478888877776553 33321221 112334467888887764
No 57
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=96.78 E-value=0.018 Score=58.36 Aligned_cols=107 Identities=15% Similarity=0.164 Sum_probs=89.6
Q ss_pred eeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCC-CCCC-CCcceeecCCcceEEec--CCCceEEEEEEe
Q 045292 299 LQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDN-LRPS-PTSKCRRRPSGCLIQEL--PNGYSKVIWVEH 374 (673)
Q Consensus 299 lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~-~~~~-~~~~~~~~PSGclIq~~--~nG~skVtwVeH 374 (673)
..++|..+..|-|+ -.||+.+.|-..+..+|..+|+=.|++. ..|. .++|.+.+=||++|++. .+|.++++++-|
T Consensus 97 ~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~ 175 (209)
T cd08870 97 TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYF 175 (209)
T ss_pred cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEE
Confidence 37899999999988 8999999997777779999998888875 3333 68999999999999999 789999999999
Q ss_pred eeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 375 VEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 375 ~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
.+- ...+|. -|++.....|...||..|++.|.
T Consensus 176 ~dp-~G~IP~---wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 176 HNP-DGGIPR---ELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred ECC-CCCCCH---HHHHHHHHhhhHHHHHHHHHHHh
Confidence 973 234654 46888899999999999988885
No 58
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=96.51 E-value=0.03 Score=56.77 Aligned_cols=105 Identities=12% Similarity=0.142 Sum_probs=83.5
Q ss_pred eeeehhhcccCCCccCceeEEEEeeeecC-CCeEEEEEEecCC-CCCC--CCcceeecCCcceEEecC---CCceEEEEE
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQHS-DGTWAVVDVSLDN-LRPS--PTSKCRRRPSGCLIQELP---NGYSKVIWV 372 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~~~-~g~w~VvDvSld~-~~~~--~~~~~~~~PSGclIq~~~---nG~skVtwV 372 (673)
.++|..+..|-|+ -.||+.+.|-..+.+ +|.++|+-.|++. ..|. .++|.....+|++|++.. +++|+|+++
T Consensus 93 ~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~ 171 (207)
T cd08911 93 EIIYWEMQWPKPF-ANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLT 171 (207)
T ss_pred EEEEEEEECCCCC-CCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEE
Confidence 7899999999996 899999998876665 5677898888874 2232 689999999999999984 678999988
Q ss_pred EeeeecCc-cccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 373 EHVEVDDR-SVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 373 eH~e~d~~-~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
-|. |+. .+|.- +++.-...+.-.||..|++-|.
T Consensus 172 ~~~--dPgG~IP~~---lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 172 YFD--NPGVNIPSY---ITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred EEe--CCCCccCHH---HHHHHHHhhccHHHHHHHHHHh
Confidence 885 665 46653 4666677888889999988775
No 59
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=96.44 E-value=0.2 Score=51.12 Aligned_cols=175 Identities=22% Similarity=0.280 Sum_probs=102.5
Q ss_pred CCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeeccc-CChhhHhhhhcccCccchhhh-hcCCCccceeee
Q 045292 455 STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIP-VPPRRIFDFLRDENSRSEWDI-LSNGGLVQEMAH 532 (673)
Q Consensus 455 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~-l~~g~~vqe~~~ 532 (673)
....+|.... ..++|.|.++|..+ |.|.-++.| |+=+| +|.+.|+|.|+| |..||. |..... |..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d--~~~l~lwk~---s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~---Ie~ 90 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD--GHPLRLWKV---STEVEAPPSVVLQRVLRE---RHLWDEDLLHSQV---IEA 90 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC--CCceEEEEE---EEEecCCCHHHHHHHhhc---hhhhhHHHHhhhh---hee
Confidence 4556898763 36789999999754 556555554 44457 999999999999 999994 333332 223
Q ss_pred ccCCCCCCceEEEEEeccCCCCCCceeEEeeec-cC-CCCcEEEEee-cchhhhhhhhcCCCCCCCcccCCccEEcCCCC
Q 045292 533 IANGRDPGNCVSLLRVNSANSSQSNMLVLQESC-TD-STGSYVIYAP-VDIVAMNMVLSGGDPDYVALLPSGFAILPDGP 609 (673)
Q Consensus 533 ia~g~~~gn~vsll~~~~~~~~~~~~~iLQes~-~D-~sgs~vVyAP-vD~~~~~~vm~G~d~~~v~lLPSGF~I~Pdg~ 609 (673)
| ++.|.|-=.-.+...+-.+--|+++-++ +| +.|++++.+- |+=+.- -+.|| --...|=|||-|=|.|
T Consensus 91 L----d~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~--pp~~g--VRa~~l~sgYlIep~g- 161 (205)
T cd08907 91 L----ENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNP--QLEAG--VRAVLLTSQYLIEPCG- 161 (205)
T ss_pred e----cCCCEEEEEEecCCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcC--CCCCC--eEEEEEeccEEEEECC-
Confidence 3 4455555555554445555667777776 44 5687766652 221110 01111 1122344777777744
Q ss_pred CCCCCCccccCCCCceeEEeeehhccCCcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 610 GFNGGGILEVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 610 ~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
+|+|.||=-.|+=...... .-| ...-..|++.-+.||++.+.
T Consensus 162 -----------~g~s~ltyi~rvD~rG~~P-~Wy---nk~~g~~~a~~l~~ir~sF~ 203 (205)
T cd08907 162 -----------MGRSRLTHICRADLRGRSP-DWY---NKVFGHLCAMEVARIRDSFP 203 (205)
T ss_pred -----------CCCeEEEEEEEeCCCCCCc-HHH---HHhHHHHHHHHHHHHHhhcc
Confidence 2578888666654432111 112 12235677788999998764
No 60
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=96.42 E-value=0.067 Score=55.54 Aligned_cols=105 Identities=12% Similarity=0.195 Sum_probs=73.0
Q ss_pred eeeehhhcccCCCccCceeEEEEeeeecCC-------CeEEEEEEecCCCC--CC-CCcceee---cCCcceEEec----
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQHSD-------GTWAVVDVSLDNLR--PS-PTSKCRR---RPSGCLIQEL---- 362 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~~~~-------g~w~VvDvSld~~~--~~-~~~~~~~---~PSGclIq~~---- 362 (673)
.+.|..+-.|=| +..|||.++|+.++.++ +.|+|+..|++.-. +. .++|++. +=.|.+|.+=
T Consensus 99 ~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~ 177 (235)
T cd08872 99 LIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQ 177 (235)
T ss_pred EEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcc
Confidence 567877778888 69999999999999876 78999999986432 11 6788775 2233333331
Q ss_pred ----CCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHH
Q 045292 363 ----PNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQC 409 (673)
Q Consensus 363 ----~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~c 409 (673)
.||.|+||++-|++---+ +|. .+++.....++-.+|..|--++
T Consensus 178 ~~t~~~~~~~ity~~~~dPgG~-iP~---wvvn~~~k~~~P~~l~~~~~~~ 224 (235)
T cd08872 178 EITRDNILCKITYVANVNPGGW-APA---SVLRAVYKREYPKFLKRFTSYV 224 (235)
T ss_pred cccCCCCeEEEEEEEEeCCCCC-ccH---HHHHHHHHhhchHHHHHHHHHH
Confidence 588999999999975444 332 3355555666777777775443
No 61
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=96.22 E-value=0.031 Score=58.11 Aligned_cols=76 Identities=9% Similarity=0.088 Sum_probs=59.5
Q ss_pred eeeehhhcccCCCccCceeEEEEeeeecCCC--eEEEEEEecC-CCCC-C-CCcceeecCCcceEEecCCCceEEEEEEe
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQHSDG--TWAVVDVSLD-NLRP-S-PTSKCRRRPSGCLIQELPNGYSKVIWVEH 374 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~~~~g--~w~VvDvSld-~~~~-~-~~~~~~~~PSGclIq~~~nG~skVtwVeH 374 (673)
.++|..+-.|. -+.+|||.++|+.++..++ ..+|.=.|+. ...| . .++|++.+=+|++|++.++|.|+||.+-|
T Consensus 123 ~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~ 201 (235)
T cd08873 123 GIYHTTMPSLT-SEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDCGTCTEVSYYNE 201 (235)
T ss_pred EEEEEEcCCCC-CCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECCCCcEEEEEEEE
Confidence 45666555555 4789999999999984433 3777777765 3332 2 78999999999999999999999999999
Q ss_pred ee
Q 045292 375 VE 376 (673)
Q Consensus 375 ~e 376 (673)
++
T Consensus 202 ~d 203 (235)
T cd08873 202 TN 203 (235)
T ss_pred cC
Confidence 86
No 62
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=96.14 E-value=0.0022 Score=78.53 Aligned_cols=61 Identities=21% Similarity=0.400 Sum_probs=57.1
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
+++.|++++..|+..+...|....+|...+.+.|...++++++.|++||||-|+|.|+..+
T Consensus 903 r~a~~~~~~d~qlk~i~~~~~~q~~~~~~~~E~l~~~~~~~~~~i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 903 RRAYRTQESDLQLKIIKACYEAQRTPTMQECEVLEEPIGLPKRVIQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hhhhccchhHHHHHHHHHHHhhccCChHHHHHhhcccccCCcchhHHhhhhhhhhhhhhhh
Confidence 5777899999999999999999999999999999999999999999999999999998644
No 63
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=95.69 E-value=0.14 Score=52.15 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=93.0
Q ss_pred CCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeeccCC
Q 045292 457 AHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIANG 536 (673)
Q Consensus 457 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g 536 (673)
.++|... ..++++.|..+++.+..| =-.++.--+|.+|+.||+||.|..+|.+||-.+.. .+.+-+|
T Consensus 21 ~~gWk~~--k~~~~~~v~~k~~~~~~g------kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~--~~iie~I--- 87 (204)
T cd08904 21 TSGWKVV--KTSKKITVSWKPSRKYHG------NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQV--YKMLQRI--- 87 (204)
T ss_pred ccCCeEE--ecCCceEEEEEEcCCCCc------eEEEEEEEecCCHHHHHHHHhccchhhhhcccccc--eeeEEEe---
Confidence 4899877 345889999998765443 22455666799999999999999999999963332 3344444
Q ss_pred CCCCceEEEEEeccC--C-CCCCceeEEeeec-cCCCCcEEE-EeecchhhhhhhhcCCCCCCC--cccCCccEEcCCCC
Q 045292 537 RDPGNCVSLLRVNSA--N-SSQSNMLVLQESC-TDSTGSYVI-YAPVDIVAMNMVLSGGDPDYV--ALLPSGFAILPDGP 609 (673)
Q Consensus 537 ~~~gn~vsll~~~~~--~-~~~~~~~iLQes~-~D~sgs~vV-yAPvD~~~~~~vm~G~d~~~v--~lLPSGF~I~Pdg~ 609 (673)
+...+|...+..+. + -...+.+.+|-.. .+. +.+++ +.-|+-+.+- -.+..| -..|+||.|.|...
T Consensus 88 -d~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~-~~~ii~~~sv~Hp~~P-----p~~g~VRa~n~~~G~~i~pl~~ 160 (204)
T cd08904 88 -DSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEG-NMNIVSSVSVEYPQCP-----PSSNYIRGYNHPCGYVCSPLPE 160 (204)
T ss_pred -CCCcEEEEEecccccCCcccCceEEEEEEEEEeCC-CEEEEEEEecccCCCC-----CCCCcEEEeeeccEEEEEECCC
Confidence 55667777665421 1 1234666666532 243 44444 4444443210 123333 37899999999332
Q ss_pred CCCCCCccccCCCCceeEEeeehhcc
Q 045292 610 GFNGGGILEVGSGGSLLTVAFQILVD 635 (673)
Q Consensus 610 ~~~~~~~~~~~~~gsllTvaFQ~l~~ 635 (673)
. .++|.||.-+|+=..
T Consensus 161 ~----------p~~t~l~~~~~~Dlk 176 (204)
T cd08904 161 N----------PAYSKLVMFVQPELR 176 (204)
T ss_pred C----------CCceEEEEEEEeCCC
Confidence 1 247999999995443
No 64
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=95.41 E-value=0.17 Score=51.56 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=80.7
Q ss_pred CCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeecc
Q 045292 455 STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIA 534 (673)
Q Consensus 455 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 534 (673)
-...+|. +. ...++|+|.++.. +|...|. ++ .+ -+++||+.|+++|.|...|.+||..... ++.+-.+
T Consensus 19 ~~~~gW~-l~-~~~~gI~Vy~k~~---~~~~~~~-~g-e~--~v~as~~~v~~ll~D~~~r~~Wd~~~~~--~~vl~~~- 86 (205)
T cd08874 19 QATAGWS-YQ-CLEKDVVIYYKVF---NGTYHGF-LG-AG--VIKAPLATVWKAVKDPRTRFLYDTMIKT--ARIHKTF- 86 (205)
T ss_pred hccCCcE-EE-ecCCCEEEEEecC---CCCcceE-EE-EE--EEcCCHHHHHHHHhCcchhhhhHHhhhh--eeeeeec-
Confidence 4567994 43 3457899999864 2334444 44 33 3499999999999999999999964322 1112122
Q ss_pred CCCCCCceEEEEEeccCCC-----CCCceeEEeeeccCCCCcEEE-EeecchhhhhhhhcCCCCCCCcccCCccEEcCCC
Q 045292 535 NGRDPGNCVSLLRVNSANS-----SQSNMLVLQESCTDSTGSYVI-YAPVDIVAMNMVLSGGDPDYVALLPSGFAILPDG 608 (673)
Q Consensus 535 ~g~~~gn~vsll~~~~~~~-----~~~~~~iLQes~~D~sgs~vV-yAPvD~~~~~~vm~G~d~~~v~lLPSGF~I~Pdg 608 (673)
+.. ..|++.....+ ...++.+|+ ++.+.-+..++ ---|+-+.+- ..+.+-=-+..+++|+.|.|.-
T Consensus 87 ---~~d--~~i~y~~~~~Pwp~~~~~RDfV~l~-~~~~~~~~~vi~~~SV~~~~~P--~~~~~~VR~~~~~~gw~i~P~~ 158 (205)
T cd08874 87 ---TED--ICLVYLVHETPLCLLKQPRDFCCLQ-VEAKEGELSVVACQSVYDKSMP--EPGRSLVRGEILPSAWILEPVT 158 (205)
T ss_pred ---CCC--eEEEEEEecCCCCCCCCCCeEEEEE-EEEECCCcEEEEEEecccccCC--CCCCCeEEeeeEeeeEEEEECc
Confidence 333 23444332111 334666666 55444444333 1112111000 0000011234678888888831
Q ss_pred CCCCCCCccccCCCCceeEEeeehhcc
Q 045292 609 PGFNGGGILEVGSGGSLLTVAFQILVD 635 (673)
Q Consensus 609 ~~~~~~~~~~~~~~gsllTvaFQ~l~~ 635 (673)
. .+.+.|.||--+|+=-.
T Consensus 159 ~---------~g~~~t~vty~~q~DPg 176 (205)
T cd08874 159 V---------EGNQYTRVIYIAQVALC 176 (205)
T ss_pred c---------CCCCcEEEEEEEEECCC
Confidence 0 01246777777776544
No 65
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=95.27 E-value=0.85 Score=45.97 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=94.3
Q ss_pred CCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhh-cccCccchhhhhcCCCccceeeeccC
Q 045292 457 AHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFL-RDENSRSEWDILSNGGLVQEMAHIAN 535 (673)
Q Consensus 457 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL-rd~~~R~eWd~l~~g~~vqe~~~ia~ 535 (673)
..+|.... +..++|.|.+|... | .|-+ .++...+|+||..||++| .|...|.+||..+.. ++.+-.+
T Consensus 23 ~~~W~l~~-~~~~~i~i~~r~~~---~--~~~~--~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~--~~~i~~~-- 90 (208)
T cd08868 23 DPGWKLEK-NTTWGDVVYSRNVP---G--VGKV--FRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLE--CKIIQVI-- 90 (208)
T ss_pred CCCceEEE-ecCCCCEEEEEEcC---C--CceE--EEEEEEEcCCHHHHHHHHHcCccccceecCcccc--eEEEEEe--
Confidence 44898663 33348999999863 2 2333 455556799999999865 588999999965433 3344444
Q ss_pred CCCCCceEEEEEeccC--CC-CCCceeEEeeeccCCCCcEEE-EeecchhhhhhhhcCCCCCC--CcccCCccEEcCCCC
Q 045292 536 GRDPGNCVSLLRVNSA--NS-SQSNMLVLQESCTDSTGSYVI-YAPVDIVAMNMVLSGGDPDY--VALLPSGFAILPDGP 609 (673)
Q Consensus 536 g~~~gn~vsll~~~~~--~~-~~~~~~iLQes~~D~sgs~vV-yAPvD~~~~~~vm~G~d~~~--v~lLPSGF~I~Pdg~ 609 (673)
+....|--...... .+ ...+.+.++-..-+. +.++| ...|+-+.+ ...+.+ +..+++||.|-|.+.
T Consensus 91 --d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~-----P~~~g~VR~~~~~~~~~i~p~~~ 162 (208)
T cd08868 91 --DDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAM-----PPTKNYVRGENGPGCWILRPLPN 162 (208)
T ss_pred --cCCcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccCCCC-----CCCCCeEEEeccccEEEEEECCC
Confidence 22334433222221 11 234566665544333 55544 444443211 112222 457889999998543
Q ss_pred CCCCCCccccCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 610 GFNGGGILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 610 ~~~~~~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
+ .++|.+|.-+++=... .|.--.+. + +-..+-.++..++.++.
T Consensus 163 ~----------~~~t~v~~~~~~Dp~G~iP~~lvN~--~--~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 163 N----------PNKCNFTWLLNTDLKGWLPQYLVDQ--A--LASVLLDFMKHLRKRIA 206 (208)
T ss_pred C----------CCceEEEEEEEECCCCCCcceeeeh--h--hHHHHHHHHHHHHHHHh
Confidence 1 1467777555444332 23221111 1 11233467777777664
No 66
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=95.23 E-value=0.39 Score=46.27 Aligned_cols=147 Identities=20% Similarity=0.295 Sum_probs=90.5
Q ss_pred CCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeeccCCC
Q 045292 458 HAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIANGR 537 (673)
Q Consensus 458 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~ 537 (673)
++|..+.. .++|+|..++..+. .+...++..-++.|+..|+++|.|...|.+||-..... ..+..+.
T Consensus 15 ~~W~~~~~--~~~v~vy~~~~~~~------~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~--~vl~~~~--- 81 (193)
T cd00177 15 EGWKLVKE--KDGVKIYTKPYEDS------GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEF--EVIEEID--- 81 (193)
T ss_pred CCeEEEEE--CCcEEEEEecCCCC------CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEE--EEEEEeC---
Confidence 58987743 34899888776431 23455667777999999999999999999999432222 2333332
Q ss_pred CCCceEEEEEeccCC-CCCCceeEEeeeccCCCC-cEEEEeecchhhhhhhhcCCCCCCC--cccCCccEEcCCCCCCCC
Q 045292 538 DPGNCVSLLRVNSAN-SSQSNMLVLQESCTDSTG-SYVIYAPVDIVAMNMVLSGGDPDYV--ALLPSGFAILPDGPGFNG 613 (673)
Q Consensus 538 ~~gn~vsll~~~~~~-~~~~~~~iLQes~~D~sg-s~vVyAPvD~~~~~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~~ 613 (673)
.+..|........- ....+++++.....+..| -+++..++|.+.. ...+..| .++++||.|-|.+
T Consensus 82 -~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~-----p~~~~~vR~~~~~~~~~i~~~~----- 150 (193)
T cd00177 82 -EHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSH-----PKEKGYVRAEIKLSGWIIEPLD----- 150 (193)
T ss_pred -CCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCC-----CCCCCcEEEEEEccEEEEEECC-----
Confidence 22444444444332 233477777776666644 5667777776411 1112333 3668888888851
Q ss_pred CCccccCCCCceeEEeeehhcc
Q 045292 614 GGILEVGSGGSLLTVAFQILVD 635 (673)
Q Consensus 614 ~~~~~~~~~gsllTvaFQ~l~~ 635 (673)
.++|.+|.-+|+=..
T Consensus 151 -------~~~~~vt~~~~~D~~ 165 (193)
T cd00177 151 -------PGKTKVTYVLQVDPK 165 (193)
T ss_pred -------CCCEEEEEEEeeCCC
Confidence 257888887777544
No 67
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]
Probab=95.21 E-value=0.028 Score=61.09 Aligned_cols=61 Identities=25% Similarity=0.403 Sum_probs=51.3
Q ss_pred CcccccccChhHHHHHHHhHhc---CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
++|++..+......+|+.+..+ .+||+..++..|++++||+..||..||-|.|-|..+-..
T Consensus 239 ~~r~~~~lP~~a~~ilr~Wl~~h~~~PYPse~~K~~La~~TGLs~~Qv~NWFINaR~R~w~p~~ 302 (342)
T KOG0773|consen 239 KWRPQRGLPKEAVSILRAWLFEHLLHPYPSDDEKLMLAKQTGLSRPQVSNWFINARVRLWKPMI 302 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCcchhccccchhcCCCcccCCchhhhcccccCCchH
Confidence 4555667999999999987443 579999999999999999999999999999988776544
No 68
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=94.90 E-value=0.14 Score=53.30 Aligned_cols=81 Identities=11% Similarity=0.061 Sum_probs=62.8
Q ss_pred eehhhcccC-CCccCceeEEEEeeeecC-CCe-EEEEEEecCC-CCCC--CCcceeecCCcceEEecCCCceEEEEEEee
Q 045292 302 MTAEFQVPS-PLVPTRENYFVRYCKQHS-DGT-WAVVDVSLDN-LRPS--PTSKCRRRPSGCLIQELPNGYSKVIWVEHV 375 (673)
Q Consensus 302 m~ael~~~S-pLvp~Re~~fLRyck~~~-~g~-w~VvDvSld~-~~~~--~~~~~~~~PSGclIq~~~nG~skVtwVeH~ 375 (673)
+|...-.|- |+ ..|||-++|-..+.. +|. ++|.=.|+.. ..|. .++|++.+=+|++|++.++|.|+||.+-|+
T Consensus 125 vY~~~~pPw~Pv-k~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~ 203 (236)
T cd08914 125 IYHITCPIVNND-KPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQI 203 (236)
T ss_pred EEEEecCCCCCC-CCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEc
Confidence 455443443 44 899999987776665 885 8888888866 4443 789999999999999999999999999999
Q ss_pred eecCcccccc
Q 045292 376 EVDDRSVHNI 385 (673)
Q Consensus 376 e~d~~~v~~l 385 (673)
+ +..+|..
T Consensus 204 d--Pg~lp~~ 211 (236)
T cd08914 204 S--ASILPYF 211 (236)
T ss_pred C--Cccchhe
Confidence 5 4556544
No 69
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.74 E-value=1.3 Score=43.78 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=83.2
Q ss_pred CCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeecc
Q 045292 455 STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIA 534 (673)
Q Consensus 455 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 534 (673)
+++.+|..... .++|+|..++..+ +.+..-+++..++.||+.+|+++.|..+|.+||--.-. .+.+-.+
T Consensus 14 ~~~~~W~~~~~--~~~v~v~~~~~~~------~~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~--~~vie~~- 82 (195)
T cd08876 14 APDGDWQLVKD--KDGIKVYTRDVEG------SPLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKE--SRVLKRT- 82 (195)
T ss_pred CCCCCCEEEec--CCCeEEEEEECCC------CCeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcce--EEEeecC-
Confidence 44555987753 4799999988632 22455677778999999999999999999999943211 1222222
Q ss_pred CCCCCCceEEEEEeccCCC-CCCceeEEeeeccCC-CCcEEEEee-cchhhhhhhhcCCCCC--CCcccCCccEEcCCCC
Q 045292 535 NGRDPGNCVSLLRVNSANS-SQSNMLVLQESCTDS-TGSYVIYAP-VDIVAMNMVLSGGDPD--YVALLPSGFAILPDGP 609 (673)
Q Consensus 535 ~g~~~gn~vsll~~~~~~~-~~~~~~iLQes~~D~-sgs~vVyAP-vD~~~~~~vm~G~d~~--~v~lLPSGF~I~Pdg~ 609 (673)
+.++.+..++....-+ ...+..+...-..+. .|.+++..- ++.. -...+. ..-.+..||.|-|.+.
T Consensus 83 ---~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~------~P~~~~~vR~~~~~~~~~i~~~~~ 153 (195)
T cd08876 83 ---DDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA------LPEQKGYVRIKTVEGQWTFTPLGN 153 (195)
T ss_pred ---CCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc------CCCCCCeEEceeceeeEEEEECCC
Confidence 2224555555543221 122344444333332 344433321 2110 000111 1345667788887431
Q ss_pred CCCCCCccccCCCCceeEEeeehhcc
Q 045292 610 GFNGGGILEVGSGGSLLTVAFQILVD 635 (673)
Q Consensus 610 ~~~~~~~~~~~~~gsllTvaFQ~l~~ 635 (673)
++|.+|.-.|+-..
T Consensus 154 ------------~~t~vt~~~~~dp~ 167 (195)
T cd08876 154 ------------GKTRVTYQAYADPG 167 (195)
T ss_pred ------------CeEEEEEEEEeCCC
Confidence 46888877766544
No 70
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=94.66 E-value=0.61 Score=46.30 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=87.3
Q ss_pred CCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhh-HhhhhcccCccchhhhhcCCCccceeeeccC
Q 045292 457 AHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRR-IFDFLRDENSRSEWDILSNGGLVQEMAHIAN 535 (673)
Q Consensus 457 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~-vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~ 535 (673)
.++|..... +.+++.+..+...+ + ..+-..++...++.+++. +.++|.|...|.+||-.... ++.+-.+.
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~~--~---~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~--~~~ie~~~- 88 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSPG--R---SPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK--AETLEVID- 88 (206)
T ss_pred CCccEEccc-cCCcceEEEEccCC--C---CceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc--EEEEEEEC-
Confidence 468987653 23444444444321 1 136788888999988886 66899999999999954332 33334442
Q ss_pred CCCCCceEEEEEeccCC-C-CCCceeEEeeeccCCCCcEEEEe-ecchhhhhhhhcCCCCCCC--cccCCccEEcCCCCC
Q 045292 536 GRDPGNCVSLLRVNSAN-S-SQSNMLVLQESCTDSTGSYVIYA-PVDIVAMNMVLSGGDPDYV--ALLPSGFAILPDGPG 610 (673)
Q Consensus 536 g~~~gn~vsll~~~~~~-~-~~~~~~iLQes~~D~sgs~vVyA-PvD~~~~~~vm~G~d~~~v--~lLPSGF~I~Pdg~~ 610 (673)
.++.|-....+..- + ...+..++.-...+..|+++|.+ .++-+.. ...+..| .++|+||.|-|.+.
T Consensus 89 ---~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~-----p~~~~~VR~~~~~~~~~i~p~~~- 159 (206)
T smart00234 89 ---NGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTS-----PPTSGYVRAENLPSGLLIEPLGN- 159 (206)
T ss_pred ---CCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCC-----CCCCCceEEEEeceEEEEEECCC-
Confidence 23444444333221 2 23467777666667777766654 5554321 0123333 58999999999443
Q ss_pred CCCCCccccCCCCceeEEeeehhcc
Q 045292 611 FNGGGILEVGSGGSLLTVAFQILVD 635 (673)
Q Consensus 611 ~~~~~~~~~~~~gsllTvaFQ~l~~ 635 (673)
+.|.+|.-.|+=..
T Consensus 160 -----------~~t~vt~~~~~D~~ 173 (206)
T smart00234 160 -----------GPSKVTWVSHADLK 173 (206)
T ss_pred -----------CCeEEEEEEEEecC
Confidence 24666666555433
No 71
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=94.42 E-value=0.95 Score=45.98 Aligned_cols=178 Identities=17% Similarity=0.160 Sum_probs=94.0
Q ss_pred CCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhccc--CccchhhhhcCCCccceeeec
Q 045292 456 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDE--NSRSEWDILSNGGLVQEMAHI 533 (673)
Q Consensus 456 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~--~~R~eWd~l~~g~~vqe~~~i 533 (673)
..++|.... ..++|+|.+|++...+|. + .++-.-+|++|+.||++|.|. ..|.+||..+.. ++.+-+|
T Consensus 20 ~~~~W~~~~--~~~~i~v~~~~~~~~~~~----~--~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~--~~vle~i 89 (208)
T cd08903 20 DESGWKTCR--RTNEVAVSWRPSAEFAGN----L--YKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKD--FEVVEAI 89 (208)
T ss_pred cccCCEEEE--cCCCEEEEeeecCCCCCc----E--EEEEEEecCCHHHHHHHHHhccchhhhhhhhcccc--EEEEEEe
Confidence 567898775 347999999987554542 2 455556699999999999854 478999964433 3344444
Q ss_pred cCCCCCCceEEEEEeccC--C-CCCCceeEEeeeccCCCCcEEEEee-cchhhhhhhhcCCCCCCCc--ccCCccEEcCC
Q 045292 534 ANGRDPGNCVSLLRVNSA--N-SSQSNMLVLQESCTDSTGSYVIYAP-VDIVAMNMVLSGGDPDYVA--LLPSGFAILPD 607 (673)
Q Consensus 534 a~g~~~gn~vsll~~~~~--~-~~~~~~~iLQes~~D~sgs~vVyAP-vD~~~~~~vm~G~d~~~v~--lLPSGF~I~Pd 607 (673)
+....|..++.... + -...++++++-.-.+..|.+++... ++-+.+ ...+..|- .-|+|+.+.|-
T Consensus 90 ----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~-----P~~~~~VR~~~~~~g~~~~~~ 160 (208)
T cd08903 90 ----SDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLC-----PPQAGFVRGFNHPCGCFCEPV 160 (208)
T ss_pred ----cCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCC-----CCCCCeEEEeeeccEEEEEEC
Confidence 23333333222111 1 2334666666554556676665542 222110 01233332 45577777661
Q ss_pred CCCCCCCCccccCCCCceeEEeeehhccCCcccccccchhhh-hhhhhhhHHHHHHHHcC
Q 045292 608 GPGFNGGGILEVGSGGSLLTVAFQILVDSVPTAKLSLGSVAT-VNSLIKCTVERIKAAVM 666 (673)
Q Consensus 608 g~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~a~~~~~sv~t-v~~li~~tv~~Ik~Al~ 666 (673)
.. +.++|.+|.-+|+=-. -.+...-|.. +...+-.|.+.++.+|.
T Consensus 161 ~~----------~~~~t~v~~~~~~Dpk----G~iP~~lvn~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08903 161 PG----------EPDKTQLVSFFQTDLS----GYLPQTVVDSFFPASMAEFYNNLTKAVK 206 (208)
T ss_pred CC----------CCCceEEEEEEEeccC----CCcCHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 11 1146777766555433 2222111111 11233456677776664
No 72
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=94.36 E-value=0.18 Score=52.63 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=54.0
Q ss_pred CccCceeEEEEeeeecCC-C-eEEEEEEec--CCCCCC-CCcceeecCCcceEEecCCCceEEEEEEeeeecCcccccc
Q 045292 312 LVPTRENYFVRYCKQHSD-G-TWAVVDVSL--DNLRPS-PTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNI 385 (673)
Q Consensus 312 Lvp~Re~~fLRyck~~~~-g-~w~VvDvSl--d~~~~~-~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l 385 (673)
-+..|||-.++...+.++ | .++|+=.|+ +..-+. .++|.+.+..|++|++.++|.|+||++-|++ +..+|..
T Consensus 139 pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~ 215 (240)
T cd08913 139 HGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYI 215 (240)
T ss_pred CCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHH
Confidence 588999999998866543 4 455544444 442222 7899999999999999999999999999998 3355543
No 73
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=94.34 E-value=1.7 Score=44.02 Aligned_cols=117 Identities=18% Similarity=0.226 Sum_probs=78.6
Q ss_pred HHHHHhhhccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcC
Q 045292 444 MVTSFCTGVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSN 523 (673)
Q Consensus 444 m~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~ 523 (673)
++..|...+.. .++|.... ..++|+|..|...+ +.+++.+.-..++.|+..++++|+|-..+.+|+-.+.
T Consensus 10 ~~~~~~~~l~~--~~~W~~~~--~~~~i~v~~r~~~~------~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~ 79 (215)
T cd08877 10 IMQENLKDLDE--SDGWTLQK--ESEGIRVYYKFEPD------GSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCI 79 (215)
T ss_pred HHHHHHhcccC--CCCcEEec--cCCCeEEEEEeCCC------CCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccce
Confidence 34455656655 67898774 34799999998733 4489999999999999999999999999999995422
Q ss_pred CCccceeeeccCCCCCCceEEEEEeccCC-CCCCceeEEeee--ccCCCCcEEEEe
Q 045292 524 GGLVQEMAHIANGRDPGNCVSLLRVNSAN-SSQSNMLVLQES--CTDSTGSYVIYA 576 (673)
Q Consensus 524 g~~vqe~~~ia~g~~~gn~vsll~~~~~~-~~~~~~~iLQes--~~D~sgs~vVyA 576 (673)
. ...+..+ +..+.|..+++...= -...++++.... ..|..|+++|+.
T Consensus 80 ~--~~~l~~~----~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~ 129 (215)
T cd08877 80 R--SKKVKQL----GRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQIVILL 129 (215)
T ss_pred e--eEEEeec----CCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCCEEEEE
Confidence 1 2233333 345678888776432 122345544333 244678776655
No 74
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=94.24 E-value=1.3 Score=45.42 Aligned_cols=173 Identities=21% Similarity=0.268 Sum_probs=95.4
Q ss_pred CCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhh-hcCCCccceeeeccCC
Q 045292 458 HAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDI-LSNGGLVQEMAHIANG 536 (673)
Q Consensus 458 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~-l~~g~~vqe~~~ia~g 536 (673)
.+|..+. ..+++.+..+|.. +|.|. =--++++=+|.||..|+..+-+ .|.+||. +..+.. +-+|
T Consensus 27 k~w~~~~--~~~~~e~~ykK~~--d~~~l---k~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~---ie~l--- 91 (205)
T cd08909 27 KGWISCS--SSDNTELAYKKVG--DGNPL---RLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKV---VETL--- 91 (205)
T ss_pred cCCcccC--CcCCeEEEEecCC--CCCce---EEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEE---EEEe---
Confidence 4677663 3578888888864 33342 2345677789777777665544 6999994 333322 2222
Q ss_pred CCCCceEEEEEeccCCCCCC-ceeEEeeeccC-CCCcEEE-EeecchhhhhhhhcCCCCCCCcccCCccEEcCCCCCCCC
Q 045292 537 RDPGNCVSLLRVNSANSSQS-NMLVLQESCTD-STGSYVI-YAPVDIVAMNMVLSGGDPDYVALLPSGFAILPDGPGFNG 613 (673)
Q Consensus 537 ~~~gn~vsll~~~~~~~~~~-~~~iLQes~~D-~sgs~vV-yAPvD~~~~~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~ 613 (673)
+..+.|=-..++...+-.+ +..+++-..+| +.|++++ +..|+-+.-.. .|+. -..++=+||.|-|-|.
T Consensus 92 -d~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~--~g~V--Ra~~~~~gylI~P~~~---- 162 (205)
T cd08909 92 -DKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPL--LGGV--RAVVLDSQYLIEPCGS---- 162 (205)
T ss_pred -CCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCC--CCcE--EEEEEcCcEEEEECCC----
Confidence 2224444444444333333 45555543345 5787643 33444331111 1222 3455668888888332
Q ss_pred CCccccCCCCceeEEeeehhccCCcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 614 GGILEVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 614 ~~~~~~~~~gsllTvaFQ~l~~~~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
|+|.||---|+= |.-.+.-=-+..++.|++.-+.||++.+.
T Consensus 163 --------g~trvt~i~~vD----pkG~~P~W~~n~~g~~~~~~~~~~r~sf~ 203 (205)
T cd08909 163 --------GKSRLTHICRVD----LKGHSPEWYNKGFGHLCAAEAARIRNSFQ 203 (205)
T ss_pred --------CCEEEEEEEEec----CCCCChHHHHHhHHHHHHHHHHHHHhhcc
Confidence 467666544443 33233222345567888899999998764
No 75
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=94.14 E-value=0.013 Score=47.72 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=31.3
Q ss_pred HHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccch
Q 045292 69 QIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 110 (673)
Q Consensus 69 Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRR 110 (673)
.++.|+++|...+++.......|..+.+|+..||+.||-.|+
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAERM 50 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHHHS
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHHhc
Confidence 356799999999999999999999999999999999996554
No 76
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=94.11 E-value=1.2 Score=45.56 Aligned_cols=172 Identities=23% Similarity=0.299 Sum_probs=97.3
Q ss_pred CccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeeccCCCC
Q 045292 459 AWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIANGRD 538 (673)
Q Consensus 459 ~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~~ 538 (673)
+|..+. ..+.+.++.+|.. +|.| +.--+.++-+|.+|..|...|-|+ |.+||...-- ++.+..+ +
T Consensus 28 ~w~~~~--~~~~~el~~~k~~--~gs~---l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e--~~vIe~l----d 92 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVS--EGPP---LRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLD--SKVIEIL----D 92 (204)
T ss_pred CCcccC--CCCcEEEEEeccC--CCCC---cEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhh--eEeeEec----C
Confidence 677663 3678999999863 4433 566777888898888888777775 9999953211 2333333 3
Q ss_pred CCceEEEEEeccCCCCCC-ceeEEeeeccC-CCCcEEEEee-cchhhhhhhhcCCCCCCCcccCCccEEcCCCCCCCCCC
Q 045292 539 PGNCVSLLRVNSANSSQS-NMLVLQESCTD-STGSYVIYAP-VDIVAMNMVLSGGDPDYVALLPSGFAILPDGPGFNGGG 615 (673)
Q Consensus 539 ~gn~vsll~~~~~~~~~~-~~~iLQes~~D-~sgs~vVyAP-vD~~~~~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~~~ 615 (673)
+.+.|-=..++..-+-.+ ++.+++-..+| .-|++++... |+-+.+- .++ --+..+-+|+.|-|.
T Consensus 93 ~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P--~~~---VR~~~~~~~w~i~P~-------- 159 (204)
T cd08908 93 SQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAP--VAG---VRVNVLLSRYLIEPC-------- 159 (204)
T ss_pred CCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCC--cCc---eEEEEEeeEEEEEEC--------
Confidence 333333333333333333 55555443343 4578777775 4433211 000 012223344444442
Q ss_pred ccccCCCCceeEEeeehhccCCcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 616 ILEVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 616 ~~~~~~~gsllTvaFQ~l~~~~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
+.|+|-||--.|+= |...+..=-+-..+.|++.-+.||++.+.
T Consensus 160 ----g~g~t~vtyi~~~D----PgG~iP~W~~N~~g~~~~~~~~~~r~sf~ 202 (204)
T cd08908 160 ----GSGKSKLTYMCRID----LRGHMPEWYTKSFGHLCAAEVVKIRDSFS 202 (204)
T ss_pred ----CCCcEEEEEEEEeC----CCCCCcHHHHhhHHHHHHHHHHHHHhhcc
Confidence 22578887654443 44444444556678889999999998764
No 77
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=93.12 E-value=0.83 Score=47.74 Aligned_cols=57 Identities=19% Similarity=0.341 Sum_probs=46.0
Q ss_pred CCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhh
Q 045292 455 STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDIL 521 (673)
Q Consensus 455 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 521 (673)
...++|..- ...++|+|-++. + +-+++-+.-+-+++|++.+|++|.|...|.+||..
T Consensus 53 a~~~~W~l~--~dkdgIkVytr~-----~---s~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVT--STVEKIKIYTLE-----E---HDVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEE--EccCCEEEEEec-----C---CCcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHh
Confidence 446889754 345789999984 1 12578888888899999999999999999999953
No 78
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=92.44 E-value=5.7 Score=39.94 Aligned_cols=162 Identities=19% Similarity=0.226 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhhhccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcc--cCccc
Q 045292 439 KLAERMVTSFCTGVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRD--ENSRS 516 (673)
Q Consensus 439 ~La~Rm~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd--~~~R~ 516 (673)
++.|.|..-|.. .++|.... ..++|+|.+++..+.. + -..++..-+|.+|+.||++|.| +..|.
T Consensus 9 ~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~~~----~--~~~k~~~~i~~~~~~v~~~l~d~~~~~r~ 74 (206)
T cd08867 9 KLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTEFT----G--HLYRAEGIVDALPEKVIDVIIPPCGGLRL 74 (206)
T ss_pred HHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCCCC----C--EEEEEEEEEcCCHHHHHHHHHhcCccccc
Confidence 445555555542 27898774 3478999998643211 2 2346667779999999999999 89999
Q ss_pred hhhhhcCCCccceeeeccCCCCCCceEEEEEeccC--C-CCCCceeEEeeeccCCCCcEEEEe-ecchhhhhhhhcCCCC
Q 045292 517 EWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSA--N-SSQSNMLVLQESCTDSTGSYVIYA-PVDIVAMNMVLSGGDP 592 (673)
Q Consensus 517 eWd~l~~g~~vqe~~~ia~g~~~gn~vsll~~~~~--~-~~~~~~~iLQes~~D~sgs~vVyA-PvD~~~~~~vm~G~d~ 592 (673)
+||.... ..+.+..| ++.+.|........ . -...+...+|-......|++++.. -|+-+.+ ...+
T Consensus 75 ~Wd~~~~--~~~~le~i----d~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~-----p~~~ 143 (206)
T cd08867 75 KWDKSLK--HYEVLEKI----SEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPER-----PPTP 143 (206)
T ss_pred ccccccc--ceEEEEEe----CCCeEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCC-----CCCC
Confidence 9995432 24555555 33444433322111 1 123456666654333335665542 3333311 1123
Q ss_pred CCC--cccCCccEEcCCCCCCCCCCccccCCCCceeEEeeehhcc
Q 045292 593 DYV--ALLPSGFAILPDGPGFNGGGILEVGSGGSLLTVAFQILVD 635 (673)
Q Consensus 593 ~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQ~l~~ 635 (673)
.+| ..+++||.|-|.... .++|.+|--+|+=..
T Consensus 144 ~~VR~~~~~~g~~i~p~~~~----------~~~t~~~~~~~~Dpk 178 (206)
T cd08867 144 GFVRGYNHPCGYFCSPLKGS----------PDKSFLVLYVQTDLR 178 (206)
T ss_pred CcEEEEeecCEEEEEECCCC----------CCceEEEEEEEeccC
Confidence 333 357888888874321 135767766665443
No 79
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=92.43 E-value=1.2 Score=46.58 Aligned_cols=66 Identities=26% Similarity=0.431 Sum_probs=48.4
Q ss_pred CCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeec
Q 045292 456 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHI 533 (673)
Q Consensus 456 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~i 533 (673)
..++|... ...++|+|.++.+ ..+++-+.=+-+++|++.||++|.|...|.+||. +...++.+..|
T Consensus 53 ~~~~W~l~--~~k~gIkVytr~~--------s~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~--~~~e~evI~~i 118 (235)
T cd08873 53 AKSDWTVA--SSTTSVTLYTLEQ--------DGVLSFCVELKVQTCASDAFDLLSDPFKRPEWDP--HGRSCEEVKRV 118 (235)
T ss_pred ccCCCEEE--EcCCCEEEEEecC--------CCceEEEEEEEecCCHHHHHHHHhCcchhhhhhh--cccEEEEEEEe
Confidence 46789754 3457899999873 2345555555589999999999999999999996 22334555555
No 80
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=92.20 E-value=4.1 Score=41.54 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=75.8
Q ss_pred CCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhh-hhcccCccchhhhhcCCCccceeeeccC
Q 045292 457 AHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFD-FLRDENSRSEWDILSNGGLVQEMAHIAN 535 (673)
Q Consensus 457 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~-fLrd~~~R~eWd~l~~g~~vqe~~~ia~ 535 (673)
.++|..-. ...++|+|-++...+ . | .+-+.-+-+++||+.||+ .|.|...|.+||.-.. .++.+..|
T Consensus 24 ~~~W~l~~-~~~~gi~V~s~~~~~-~----~--~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~--~~~vi~~~-- 91 (209)
T cd08906 24 EENWKFEK-NNDNGDTVYTLEVPF-H----G--KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVS--ACQVLQRV-- 91 (209)
T ss_pred ccCCEEEE-ecCCCCEEEEeccCC-C----C--cEEEEEEEEcCCHHHHHHHHHhChhhccccCccch--hhhheeec--
Confidence 35897442 235789999876522 1 2 444777778999999985 7899999999994221 13344443
Q ss_pred CCCCCceEEEEEeccC---CC-CCCceeEEeeeccCCCCcEEEEeecchhhhhhhhcCCCCCCC--cccCCccEEcC
Q 045292 536 GRDPGNCVSLLRVNSA---NS-SQSNMLVLQESCTDSTGSYVIYAPVDIVAMNMVLSGGDPDYV--ALLPSGFAILP 606 (673)
Q Consensus 536 g~~~gn~vsll~~~~~---~~-~~~~~~iLQes~~D~sgs~vVyAPvD~~~~~~vm~G~d~~~v--~lLPSGF~I~P 606 (673)
++.+.|. ..+... ++ ...++.++.-..-+..+..++...++.+.+ ...+.+| ...++||.|.|
T Consensus 92 --~~~~~i~-Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~i~~~~sv~~~~~-----P~~~~~VR~~~~~~G~~i~~ 160 (209)
T cd08906 92 --DDNTLVS-YDVAAGAAGGVVSPRDFVNVRRIERRRDRYVSAGISTTHSHK-----PPLSKYVRGENGPGGFVVLK 160 (209)
T ss_pred --cCCcEEE-EEEccccccCCCCCCceEEEEEEEecCCcEEEEEEEEecCCC-----CCCCCeEEEeeeccEEEEEE
Confidence 2333433 232221 12 334676765544555554445444444321 1233444 35899999998
No 81
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=92.10 E-value=2.9 Score=43.56 Aligned_cols=188 Identities=18% Similarity=0.225 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCccccccCCC-----CceEEEEccCCCCCCCCC-ceEEEEEEeecccCChhhHhhhh
Q 045292 436 SMLKLAERMVTSFCTGVGASTAHAWTTLSATGS-----DDVRVMTRKSMDDPGRPP-GIVLSAATSFWIPVPPRRIFDFL 509 (673)
Q Consensus 436 sll~La~Rm~~~F~~~v~~s~~~~W~~l~~~~~-----~dvrv~~r~~~~~~g~p~-g~vl~A~tS~wLpv~p~~vf~fL 509 (673)
-++.||..-+.-|- .+.-...-.|.+..+.+. |....+.... ..+ .|. ..+..+-++-.+++.|..|.++|
T Consensus 3 ~~~~lA~~am~Ell-~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~-~~~-~~~~~~~eASR~~glV~m~~~~lVe~l 79 (229)
T cd08875 3 GLLELAEEAMDELL-KLAQGGEPLWIKSPGMKPEILNPDEYERMFPRH-GGS-KPGGFTTEASRACGLVMMNAIKLVEIL 79 (229)
T ss_pred HHHHHHHHHHHHHH-HHhccCCCCceecCCCCccccCHHHHhhcccCc-CCC-CCCCCeEEEEeeeEEEecCHHHHHHHH
Confidence 37889999999998 444555778998765532 2222222221 111 233 45788888999999999999999
Q ss_pred cccCccch-hhhhcCCCccceeeeccCCCCCCceEEEEEeccCCC----CCCceeEEeeeccCCCCcEEEEe-ecchhhh
Q 045292 510 RDENSRSE-WDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANS----SQSNMLVLQESCTDSTGSYVIYA-PVDIVAM 583 (673)
Q Consensus 510 rd~~~R~e-Wd~l~~g~~vqe~~~ia~g~~~gn~vsll~~~~~~~----~~~~~~iLQes~~D~sgs~vVyA-PvD~~~~ 583 (673)
.|..++.+ .+-.+.-..+-++..=..|.+.+..+.|+..+-.-+ .-.+..+|.-|.--+-|+.+|-- .+|-..
T Consensus 80 mD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~- 158 (229)
T cd08875 80 MDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQ- 158 (229)
T ss_pred hChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeecccc-
Confidence 99655555 443333222222222222234566788876652211 23478999888777788876643 444210
Q ss_pred hhhhcCCCCC---CCcccCCccEEcCCCCCCCCCCccccCCCCceeEEeeehhccCCcccccc
Q 045292 584 NMVLSGGDPD---YVALLPSGFAILPDGPGFNGGGILEVGSGGSLLTVAFQILVDSVPTAKLS 643 (673)
Q Consensus 584 ~~vm~G~d~~---~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~a~~~ 643 (673)
+...+. .--.+||||-|=| . .+|+|.+|+-=++-++..+.-.+|
T Consensus 159 ----~~p~~~~~~r~~~~PSGcLIq~----~--------~nG~SkVtwVeH~e~d~~~~~~l~ 205 (229)
T cd08875 159 ----TAPPPASFVRCRRLPSGCLIQD----M--------PNGYSKVTWVEHVEVDEKPVHLLY 205 (229)
T ss_pred ----cCCCCCCccEEEEecCcEEEEE----C--------CCCceEEEEEEEEeccCCcccccc
Confidence 111122 2348999999977 1 126799998888877765444443
No 82
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=91.08 E-value=1.5 Score=44.89 Aligned_cols=59 Identities=24% Similarity=0.309 Sum_probs=41.9
Q ss_pred CCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhh
Q 045292 455 STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDIL 521 (673)
Q Consensus 455 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 521 (673)
-..++|...... +||.|..+.+....|.- -= +---++.-|+.|+||+.+..+|.+||-.
T Consensus 20 ~~~~~Wkl~k~~--~~~~v~~k~~~ef~gkl----~R--~Egvv~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 20 ILEEEWRVAKKS--KDVTVWRKPSEEFGGYL----YK--AQGVVEDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred ccccCcEEEEeC--CCEEEEEecCCcCCCce----EE--EEEEecCCHHHHHHHHhcccchhcccch
Confidence 367899866433 88999999885544421 11 1112278889999999999999999953
No 83
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=90.63 E-value=3 Score=42.24 Aligned_cols=109 Identities=16% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCccccccCCC--CceEEEEccCCCCCCCCCceEEEEEEeeccc-CChhhHhhhhcccCccchhhhhcCCCccceeeec
Q 045292 457 AHAWTTLSATGS--DDVRVMTRKSMDDPGRPPGIVLSAATSFWIP-VPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHI 533 (673)
Q Consensus 457 ~~~W~~l~~~~~--~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~i 533 (673)
+++|.......+ .+|+|-.|+..+ . .+.--++...++ +||+.|+++|.|...|.+||... .|.--|
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~~-s-----~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~~l 89 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPKG-T-----GLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETV-----IEHETL 89 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccCC-C-----CceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhhe-----eeEEEE
Confidence 378998754332 237777766532 1 234456666774 89999999999999999999533 333333
Q ss_pred cCCCCCCceEEEEEeccCCC-CCCceeEEeeeccCCCCcEEEEe
Q 045292 534 ANGRDPGNCVSLLRVNSANS-SQSNMLVLQESCTDSTGSYVIYA 576 (673)
Q Consensus 534 a~g~~~gn~vsll~~~~~~~-~~~~~~iLQes~~D~sgs~vVyA 576 (673)
....+.++.|--......-+ ...+..+....+.|.-|++++..
T Consensus 90 e~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~i~~ 133 (209)
T cd08870 90 EEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRSYVCVT 133 (209)
T ss_pred EecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCEEEEEE
Confidence 33223244444333332222 22345544445666566666655
No 84
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=90.20 E-value=1.7 Score=45.19 Aligned_cols=60 Identities=28% Similarity=0.314 Sum_probs=35.0
Q ss_pred ccchhHHHHHHH--HHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHH
Q 045292 107 QNKRTQMKAQHE--RHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDR 180 (673)
Q Consensus 107 QNRRaK~Kr~~~--r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r 180 (673)
||-|-|.|-... +.+-..|..+|++|+.||+.|+... ..+-.+.+.|..+...|++||..
T Consensus 82 QtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n--------------~~L~~~n~el~~~le~~~~~l~~ 143 (292)
T KOG4005|consen 82 QTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAIN--------------ESLLAKNHELDSELELLRQELAE 143 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhhHHHHHHHHHHHHHHHh
Confidence 444554444333 3444566777777777777777654 22334555666666666666653
No 85
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=90.04 E-value=1.2 Score=41.37 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=26.8
Q ss_pred cccChhHHHHH-HHhHhcCCCCChHHHHHHHHHhCCCcccEEeecc
Q 045292 63 HRHTQRQIQEM-EAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 107 (673)
Q Consensus 63 trfT~~Ql~~L-E~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQ 107 (673)
.+||.++.... ...+.. . ....++|+++|+++.++..|.+
T Consensus 11 r~ys~EfK~~aV~~~~~~-g----~sv~evA~e~gIs~~tl~~W~r 51 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEP-G----MTVSLVARQHGVAASQLFLWRK 51 (121)
T ss_pred CCCCHHHHHHHHHHHHcC-C----CCHHHHHHHHCcCHHHHHHHHH
Confidence 35777765433 333432 2 2356789999999999999943
No 86
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=89.90 E-value=3.3 Score=40.95 Aligned_cols=166 Identities=21% Similarity=0.320 Sum_probs=94.7
Q ss_pred HHHHHHHHHhhhccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhh
Q 045292 440 LAERMVTSFCTGVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 440 La~Rm~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
|+.+.+..|.. ......++|.........++.+ ++... +.+ ..+...++..-++.++..+|..|.+... +||
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~~--~~~~~--~~~-~~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd 73 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVYY--KKVSP--SDS-CPIKMFKAEGVVPASPEQVVEDLLDDRE--QWD 73 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEEE--EEEEC--SSS-TSCEEEEEEEEESSCHHHHHHHHHCGGG--HHS
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEEE--EEeCc--ccc-ccceEEEEEEEEcCChHHHHHHHHhhHh--hcc
Confidence 45555555653 3355677999886333444443 33311 111 2456678888889888877777776433 999
Q ss_pred hhcCCCccceeeeccCCCCCCceEEEEEeccCC--C-CCCceeEEeeeccCCCCcEEE-EeecchhhhhhhhcCCCCCCC
Q 045292 520 ILSNGGLVQEMAHIANGRDPGNCVSLLRVNSAN--S-SQSNMLVLQESCTDSTGSYVI-YAPVDIVAMNMVLSGGDPDYV 595 (673)
Q Consensus 520 ~l~~g~~vqe~~~ia~g~~~gn~vsll~~~~~~--~-~~~~~~iLQes~~D~sgs~vV-yAPvD~~~~~~vm~G~d~~~v 595 (673)
-... .++.+-.+ +++..|.....+..- + ...+..+++-...+.-|++++ +..||-+..... .+..|
T Consensus 74 ~~~~--~~~~le~~----~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~----~~~~V 143 (206)
T PF01852_consen 74 KMCV--EAEVLEQI----DEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPN----SKGYV 143 (206)
T ss_dssp TTEE--EEEEEEEE----ETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-----TTSE
T ss_pred cchh--hheeeeec----CCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccceEEEEEeeecccccccc----ccCcc
Confidence 5432 23334444 233556555544322 2 224666666655566676554 458877642221 23333
Q ss_pred --cccCCccEEcCCCCCCCCCCccccCCCCceeEEeeehhcc
Q 045292 596 --ALLPSGFAILPDGPGFNGGGILEVGSGGSLLTVAFQILVD 635 (673)
Q Consensus 596 --~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQ~l~~ 635 (673)
-+++|||.|-|.+. +.|.+|.-.|+=..
T Consensus 144 R~~~~~s~~~i~~~~~------------~~~~vt~~~~~D~~ 173 (206)
T PF01852_consen 144 RAEILISGWVIRPLGD------------GRTRVTYVSQVDPK 173 (206)
T ss_dssp EEEEESEEEEEEEETT------------CEEEEEEEEEEESS
T ss_pred eeeeeeEeEEEEEccC------------CCceEEEEEEECCC
Confidence 38999999999433 34888877775544
No 87
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=88.83 E-value=2.5 Score=40.19 Aligned_cols=86 Identities=26% Similarity=0.336 Sum_probs=51.1
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHh-CCCcccEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHH
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSREL-GLEPLQVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENNRYKE 141 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L-gLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e 141 (673)
.+|+.+++..+ . -.+|=+.| |++...|-.|=|.||+-.-+-=......+--.+.+.|..++..|.+
T Consensus 22 d~lsDd~Lvsm------------S-VReLNr~LrG~~reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~q 88 (135)
T KOG4196|consen 22 DRLSDDELVSM------------S-VRELNRHLRGLSREEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQ 88 (135)
T ss_pred CCcCHHHHHHh------------h-HHHHHHHhcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888877665 1 22344444 8888889899888887543321111111222233445555555544
Q ss_pred hhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhh
Q 045292 142 ALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRIS 182 (673)
Q Consensus 142 ~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~ 182 (673)
|.++|+.||++++.|++-..
T Consensus 89 ---------------------qv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 89 ---------------------QVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888877443
No 88
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=87.59 E-value=3.2 Score=42.50 Aligned_cols=120 Identities=18% Similarity=0.165 Sum_probs=81.2
Q ss_pred HHHHHHhhc-CCCCcccchhhhhccccccee-eeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEe-eee
Q 045292 250 MEEFLRMAQ-AGDPLWTDQNQWSSVFCGIVS-RAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRY-CKQ 326 (673)
Q Consensus 250 m~El~~la~-~~~plW~D~~~w~~~Fp~iva-rA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRy-ck~ 326 (673)
+.|-++... ..|.-|+ +.|.+ ....+++...+. ++...+.|....+|-| +.+|||..|.. +..
T Consensus 53 ~~~~l~~~h~~~E~~~i---------~~v~~~~~~~l~~~~~~~----~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~ 118 (208)
T cd08864 53 FREGLRDTHTEYEKEYV---------HEIGAYDLEPVEVDGEGD----GVVTYLVQLTYKFPFP-LSPRVFNELVHIKSD 118 (208)
T ss_pred HHhhhhHhHHhhhhhch---------hhhccceeEEeeecCCCc----cceEEEEEEEEECCCC-CCCcEEEEEEEeecc
Confidence 556555543 5777887 33333 334455444222 2356788888889999 89999999999 666
Q ss_pred cCC-CeEEEEEEecCCCC-C---CCCcceeecCCcceEEecCC---CceEEEEEEeeeecCc-cccc
Q 045292 327 HSD-GTWAVVDVSLDNLR-P---SPTSKCRRRPSGCLIQELPN---GYSKVIWVEHVEVDDR-SVHN 384 (673)
Q Consensus 327 ~~~-g~w~VvDvSld~~~-~---~~~~~~~~~PSGclIq~~~n---G~skVtwVeH~e~d~~-~v~~ 384 (673)
.+. ..++|+.++++.-. + ..++|++ .=||..|+..|. +-..|+|+==...|+. .||.
T Consensus 119 ~~~~~~~i~vs~p~~~~~~p~~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 119 LDPASEFMVVSLPITPPLVESLYENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred CCCCCeEEEEEEEecCCcCCccCCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 652 67788999886432 2 2678887 789999998875 4789999983344554 3554
No 89
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=84.63 E-value=7.4 Score=39.45 Aligned_cols=179 Identities=16% Similarity=0.226 Sum_probs=92.5
Q ss_pred CCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecc-cCChhhHhhhhcccCccchhhhhcCCCccceeeecc
Q 045292 456 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWI-PVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIA 534 (673)
Q Consensus 456 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wL-pv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 534 (673)
-..+|..... .++|+|-.|...+ . |+ .--++...+ ++|++.+|++|.|...|.+||-.. ++.--|.
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~-s----~~-~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~-----~~~~~le 85 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPG-T----GL-YEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATA-----VELEVVD 85 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCC-C----Cc-EEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhh-----eeEEEEE
Confidence 3456987643 4679998887643 2 22 345554545 899999999999999999999533 3333333
Q ss_pred CCCCCCceEEEEEeccCCC-CCCceeEEeeeccCCC-CcEEEEe-ecchhhhhhhhcCCCCC--CCcccCCccEEcCCCC
Q 045292 535 NGRDPGNCVSLLRVNSANS-SQSNMLVLQESCTDST-GSYVIYA-PVDIVAMNMVLSGGDPD--YVALLPSGFAILPDGP 609 (673)
Q Consensus 535 ~g~~~gn~vsll~~~~~~~-~~~~~~iLQes~~D~s-gs~vVyA-PvD~~~~~~vm~G~d~~--~v~lLPSGF~I~Pdg~ 609 (673)
+..+.++.|--.+....-+ ...+..+-+-...|.. |.++|.. -|+-+.. ..-+. -|..+.+|+.|-|.+.
T Consensus 86 ~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~-----P~~~g~VRv~~~~~~~~i~p~~~ 160 (207)
T cd08911 86 EDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSY-----PESPKKVRVEDYWSYMVIRPHKS 160 (207)
T ss_pred ccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCC-----CCCCCCEEEEEeEEEEEEEeCCC
Confidence 3223344444444332212 2234444443356654 4434442 1221100 01111 2445677777777532
Q ss_pred CCCCCCccccCCCCceeEEeeehhccCCcccccccchhh--hhhhhhhhHHHHHHHHcC
Q 045292 610 GFNGGGILEVGSGGSLLTVAFQILVDSVPTAKLSLGSVA--TVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 610 ~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~a~~~~~sv~--tv~~li~~tv~~Ik~Al~ 666 (673)
. +.+|+-++.-++ .+ |...+. .++. .+...+-.++++++.|..
T Consensus 161 ~---------~~~~~~~~~~~~--~d--PgG~IP-~~lvN~~~~~~~~~~l~~l~~a~~ 205 (207)
T cd08911 161 F---------DEPGFEFVLTYF--DN--PGVNIP-SYITSWVAMSGMPDFLERLRNAAL 205 (207)
T ss_pred C---------CCCCeEEEEEEE--eC--CCCccC-HHHHHHHHHhhccHHHHHHHHHHh
Confidence 1 114665654333 22 222221 1222 223445567888888763
No 90
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=83.85 E-value=1.5 Score=44.62 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=58.9
Q ss_pred CCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeeccc-CChhhHhhhhcccCccchhhhhcCCCccceeeec
Q 045292 455 STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIP-VPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHI 533 (673)
Q Consensus 455 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~i 533 (673)
-.+.+|..... .++|+|-.|...+ ..+.--++...++ ++|+.++++|.|...|.+||..+ .++...
T Consensus 22 ~~~~~W~l~~~--~~~i~Vy~r~~~~------s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~-----~~~~~~ 88 (207)
T cd08910 22 LDGAAWELLVE--SSGISIYRLLDEQ------SGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYV-----KELYEK 88 (207)
T ss_pred CCCCCeEEEEe--cCCeEEEEeccCC------CCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHH-----Hhheee
Confidence 44467987743 4689998887632 2334677777888 89999999999999999999643 222221
Q ss_pred cCCCCCCceEEEEEeccCC-CCCCceeEEee
Q 045292 534 ANGRDPGNCVSLLRVNSAN-SSQSNMLVLQE 563 (673)
Q Consensus 534 a~g~~~gn~vsll~~~~~~-~~~~~~~iLQe 563 (673)
..+++.|--.+....- -...++.+++.
T Consensus 89 ---~~~~~~i~y~~~k~PwPvs~RD~V~~r~ 116 (207)
T cd08910 89 ---ECDGETVIYWEVKYPFPLSNRDYVYIRQ 116 (207)
T ss_pred ---cCCCCEEEEEEEEcCCCCCCceEEEEEE
Confidence 1335555555544322 23345655554
No 91
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=82.02 E-value=0.69 Score=54.44 Aligned_cols=47 Identities=17% Similarity=0.425 Sum_probs=43.7
Q ss_pred HHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 70 IQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 70 l~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
...|...|..|..|+..+...+|.+.||+.+.||.||+++++....-
T Consensus 568 ~sllkayyaln~~ps~eelskia~qvglp~~vvk~wfE~~~a~e~sv 614 (1007)
T KOG3623|consen 568 TSLLKAYYALNGLPSEEELSKIAQQVGLPFAVVKAWFEDEEAEEMSV 614 (1007)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhcccHHHHHHHHHhhhhhhhhh
Confidence 78899999999999999999999999999999999999998877653
No 92
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=81.69 E-value=5 Score=34.54 Aligned_cols=44 Identities=30% Similarity=0.474 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHh
Q 045292 117 HERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRI 181 (673)
Q Consensus 117 ~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~ 181 (673)
+.-.....|+.+++.|+.+|..+.+. ...|+.||.+|++|....
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e---------------------~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEE---------------------NEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 33455667888888888888888754 577999999999887643
No 93
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=81.40 E-value=3.8 Score=32.15 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHH
Q 045292 117 HERHENQILKAENQKLRAENNRYK 140 (673)
Q Consensus 117 ~~r~e~~~l~~en~~L~~en~~l~ 140 (673)
+.+.++..|++.++.|++++..|.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~ 25 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLK 25 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888777654
No 94
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere. Within the N-terminal 125 residues, there is a DNA-binding region, which binds to a corresponding 17bp CENP-B box sequence. CENP-B dimers either bind two separate DNA molecules or alternatively, they may bind two CENP-B boxes on one DNA molecule, with the intervening stretch of DNA forming a loop structure. The CENP-B DNA-binding domain consists of two repeating domains, RP1 and RP2. This family corresponds to RP1 has been shown to consist of four helices in a helix-turn-helix structure [].; GO: 0003677 DNA binding, 0000775 chromosome, centromeric region; PDB: 1BW6_A 1HLV_A 2ELH_A.
Probab=80.93 E-value=1.1 Score=35.89 Aligned_cols=46 Identities=20% Similarity=0.337 Sum_probs=34.1
Q ss_pred cccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccc
Q 045292 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 109 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNR 109 (673)
||+|..+|.++...+-..++..+ ....+|+++|++..+|..|..||
T Consensus 1 krkR~~LTl~eK~~iI~~~e~g~-----s~~~ia~~fgv~~sTv~~I~K~k 46 (53)
T PF04218_consen 1 KRKRKSLTLEEKLEIIKRLEEGE-----SKRDIAREFGVSRSTVSTILKNK 46 (53)
T ss_dssp SSSSSS--HHHHHHHHHHHHCTT------HHHHHHHHT--CCHHHHHHHCH
T ss_pred CCCCccCCHHHHHHHHHHHHcCC-----CHHHHHHHhCCCHHHHHHHHHhH
Confidence 45677899998888878888775 46789999999999999998874
No 95
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=79.04 E-value=9.6 Score=45.60 Aligned_cols=120 Identities=23% Similarity=0.371 Sum_probs=69.7
Q ss_pred cccCChhhHhhhhcccC-ccchhhhh-cCCCccceeeeccCCCCCCceEEEEEeccC----CCCCCceeEEeeeccCCCC
Q 045292 497 WIPVPPRRIFDFLRDEN-SRSEWDIL-SNGGLVQEMAHIANGRDPGNCVSLLRVNSA----NSSQSNMLVLQESCTDSTG 570 (673)
Q Consensus 497 wLpv~p~~vf~fLrd~~-~R~eWd~l-~~g~~vqe~~~ia~g~~~gn~vsll~~~~~----~~~~~~~~iLQes~~D~sg 570 (673)
-++.+|+.||++|-+.. .|.|||.. ..|..++++ +...+|.--++... --...+..++.--.-+.-|
T Consensus 234 VV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~I-------D~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 234 VVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEV-------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred EecCCHHHHHHHHhccCcccccchhcccceEEEEEe-------cCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 45899999999997444 99999954 334444444 33445553343311 1122456666655566778
Q ss_pred cEEE-EeecchhhhhhhhcCCCCCCC--cccCCccEEcCCCCCCCCCCccccCCCCceeEEeeehhccC
Q 045292 571 SYVI-YAPVDIVAMNMVLSGGDPDYV--ALLPSGFAILPDGPGFNGGGILEVGSGGSLLTVAFQILVDS 636 (673)
Q Consensus 571 s~vV-yAPvD~~~~~~vm~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQ~l~~~ 636 (673)
+|++ |-+|.-+.- +--+.+| -+-|+||.|.|--... +..+|+||--+|+=...
T Consensus 307 sYvil~~Sv~Hp~c-----PP~kG~VRg~~~pGGwiIsPL~~~~--------g~~r~lv~~~lqtDlkG 362 (719)
T PLN00188 307 SYVVLFRSREHENC-----GPQPGFVRAHLESGGFNISPLKPRN--------GRPRTQVQHLMQIDLKG 362 (719)
T ss_pred cEEEeeeeeecCCC-----CCCCCeEEEEEeCCEEEEEECCCCC--------CCCceEEEEEEEEccCc
Confidence 7766 555554310 0012222 3779999999932211 12578888877776543
No 96
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=78.59 E-value=2.7 Score=44.05 Aligned_cols=57 Identities=26% Similarity=0.385 Sum_probs=42.4
Q ss_pred CCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhh
Q 045292 455 STAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDIL 521 (673)
Q Consensus 455 s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l 521 (673)
...++|..-.. .++|+|-++... . +++-++-+-+++|++.||++|.|...|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s-----~---~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED-----K---FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC-----C---ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhh
Confidence 45668975532 488999995531 1 134456667799999999999999999999953
No 97
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=75.64 E-value=9.4 Score=33.44 Aligned_cols=60 Identities=22% Similarity=0.391 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHH----Hhhhhhhh
Q 045292 114 KAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEID----RISGIAAK 187 (673)
Q Consensus 114 Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~----r~~~~~~~ 187 (673)
|-++.-.....|+-+.+.|++.|..+.+.. ..+......|..||.+||+|.. |+.++.++
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~--------------~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEV--------------QNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444556677888888888888887765 2222345669999999999985 56665544
No 98
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=73.98 E-value=1.1e+02 Score=31.17 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhc-ccCcc
Q 045292 437 MLKLAERMVTSFCTGVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLR-DENSR 515 (673)
Q Consensus 437 ll~La~Rm~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLr-d~~~R 515 (673)
-.++++.....|-.-.+ ..++|.... .+.++++|.++...+ . | --.+.-.-+|+|++.||++|. |-..+
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~~W~~~~-~~~~gi~v~s~~~~~-~----~--k~~k~e~~i~~~~~~l~~~l~~d~e~~ 75 (209)
T cd08905 6 YIKQGEEALQKSLSILQ--DQEGWKTEI-VAENGDKVLSKVVPD-I----G--KVFRLEVVVDQPLDNLYSELVDRMEQM 75 (209)
T ss_pred HHHHHHHHHHHHHHHhc--cccCCEEEE-ecCCCCEEEEEEcCC-C----C--cEEEEEEEecCCHHHHHHHHHhchhhh
Confidence 34455555555554442 456898663 335677888866532 2 1 334455667999999996666 56999
Q ss_pred chhhhhc
Q 045292 516 SEWDILS 522 (673)
Q Consensus 516 ~eWd~l~ 522 (673)
.+|+..+
T Consensus 76 ~~W~~~~ 82 (209)
T cd08905 76 GEWNPNV 82 (209)
T ss_pred ceecccc
Confidence 9999543
No 99
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=72.20 E-value=6.8 Score=41.99 Aligned_cols=43 Identities=37% Similarity=0.432 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHH
Q 045292 121 ENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDR 180 (673)
Q Consensus 121 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r 180 (673)
....+++||++|++|+..+++++ ....+.|+.||++||+.|.-
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~-----------------~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQL-----------------EILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHhcC
Confidence 33456677777777776664443 11223488999999998763
No 100
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=72.06 E-value=45 Score=31.91 Aligned_cols=123 Identities=15% Similarity=0.209 Sum_probs=61.0
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCCC
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRPS 345 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~~ 345 (673)
|..+|-+.||.++. ++|++.|..|- | ....++...+ ..+.-|.=|.+ +....|-|.=......
T Consensus 22 Dv~~~P~~~~~~~~----~~~l~~~~~~~--~----~r~~i~~~~~--g~~~~w~s~~~--~~~~~~~i~~~~~~~~--- 84 (146)
T cd08860 22 DIATWPDLFSEYAE----AEVLEEDGDTV--R----FRLTMHPDAN--GTVWSWVSERT--LDPVNRTVRARRVETG--- 84 (146)
T ss_pred hhhhhhhhccceEE----EEEEEecCCeE--E----EEEEEEeccC--CEEEEEEEEEE--ecCCCcEEEEEEecCC---
Confidence 99999999999865 66777543321 1 1111222222 12222222433 2333443331122111
Q ss_pred CCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 045292 346 PTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCER 411 (673)
Q Consensus 346 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~ 411 (673)
+| ..+=-...+++.++| |+|++.-+++...-. .+.-+++..-.--.-..=+++|.+.+|+
T Consensus 85 p~---~~m~~~W~f~~~~~g-T~V~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 85 PF---AYMNIRWEYTEVPEG-TRMRWVQDFEMKPGA--PVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred Cc---ceeeeeEEEEECCCC-EEEEEEEEEEECCCC--ccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 11 222233456888887 999999998865311 2222333332233344556666666665
No 101
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=71.69 E-value=10 Score=39.51 Aligned_cols=64 Identities=17% Similarity=0.451 Sum_probs=47.4
Q ss_pred hccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEE-EEEEeeccc-CChhhHhhhhcccCccchhhhh
Q 045292 451 GVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVL-SAATSFWIP-VPPRRIFDFLRDENSRSEWDIL 521 (673)
Q Consensus 451 ~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl-~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l 521 (673)
+.-+-..++|..... .++|+|-.|...+ . |+++ .-++..-++ ++++.++++|.|...|.+||.-
T Consensus 19 ~~~~~~~~~W~l~~~--~~gikVy~r~~~~-s----g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~ 84 (235)
T cd08872 19 ALEDVGADGWQLFAE--EGEMKVYRREVEE-D----GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETT 84 (235)
T ss_pred HHccCCCCCCEEEEe--CCceEEEEEECCC-C----CceeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhh
Confidence 334555668987643 5689999887643 2 2332 367777788 9999999999999999999963
No 102
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=70.07 E-value=8.1 Score=40.75 Aligned_cols=41 Identities=34% Similarity=0.405 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHH
Q 045292 121 ENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEID 179 (673)
Q Consensus 121 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~ 179 (673)
....+++||++|++|+..++... .+.++|+.||.+|++.|.
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~------------------~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRL------------------QELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhc
Confidence 34456666667777766666554 234567888888888765
No 103
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.72 E-value=12 Score=29.38 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=29.8
Q ss_pred HHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 124 ILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 124 ~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
++..+++.|+.....|+... ..|..||..|+.|+..+.+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~---------------------~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEY---------------------DSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Confidence 46677888888888887653 6688888888888887765
No 104
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.62 E-value=17 Score=31.24 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHH----Hhhhhhhh
Q 045292 116 QHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEID----RISGIAAK 187 (673)
Q Consensus 116 ~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~----r~~~~~~~ 187 (673)
++.-.-...|+-+.+.|++.|..|.+.. .+.....+.|..||..||+|-. |+.++..|
T Consensus 14 qqAvdTI~LLQmEieELKEknn~l~~e~--------------q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGk 75 (79)
T COG3074 14 QQAIDTITLLQMEIEELKEKNNSLSQEV--------------QNAQHQREALERENEQLKEEQNGWQERLRALLGK 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHhHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445567777888888887776654 2223345668899999998864 55555444
No 105
>smart00338 BRLZ basic region leucin zipper.
Probab=67.46 E-value=22 Score=29.39 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHH
Q 045292 119 RHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEI 178 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el 178 (673)
......|..+...|..+|..|...+ .+|..|+..|++++
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~---------------------~~l~~e~~~lk~~~ 63 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEI---------------------ERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 4445566777777777777776543 56777777777765
No 106
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.89 E-value=31 Score=28.41 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHh
Q 045292 119 RHENQILKAENQKLRAENNRYKEA 142 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~ 142 (673)
......|....+.|..+|..|+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~ 48 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKE 48 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777666554
No 107
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=62.81 E-value=16 Score=33.76 Aligned_cols=47 Identities=30% Similarity=0.425 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 123 QILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 123 ~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
..+.+....+.++...|+..+ .++-.+..+|+.||+.|++.|.....
T Consensus 11 ~~le~~l~~l~~~~~~LK~~~--------------~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 11 DQLEQQLGQLLEELEELKKQL--------------QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444445555555555544 22334556777888888877776544
No 108
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=62.40 E-value=19 Score=41.62 Aligned_cols=22 Identities=27% Similarity=0.558 Sum_probs=18.4
Q ss_pred hhHHHHHHHHhHhHHHHHHhhh
Q 045292 162 FDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 162 ~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
.|.++|+.||+.||++|.-+..
T Consensus 316 ~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 316 SENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHhhhHHHHHHHHHHhh
Confidence 5788999999999999886544
No 109
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=60.78 E-value=43 Score=34.81 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=55.2
Q ss_pred eeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCC-C--CCCcceeecCCcceEE-----ecCCC-ceEEE
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR-P--SPTSKCRRRPSGCLIQ-----ELPNG-YSKVI 370 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~-~--~~~~~~~~~PSGclIq-----~~~nG-~skVt 370 (673)
.++|-+.+.|.|+- .||+-++|-.-..++..-+||-.|+..-- | ...+|..-.=||.+|+ +-++| .|.++
T Consensus 101 ~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~ 179 (219)
T KOG2761|consen 101 EVVYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYL 179 (219)
T ss_pred eEEEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEE
Confidence 78999999998876 59999998888877777788877775321 1 1458888999999999 55555 34555
Q ss_pred EEEe
Q 045292 371 WVEH 374 (673)
Q Consensus 371 wVeH 374 (673)
|.+|
T Consensus 180 ~~~~ 183 (219)
T KOG2761|consen 180 YFHN 183 (219)
T ss_pred EEEC
Confidence 5544
No 110
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=60.68 E-value=22 Score=31.71 Aligned_cols=46 Identities=33% Similarity=0.502 Sum_probs=33.6
Q ss_pred HHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhhhh
Q 045292 125 LKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIA 185 (673)
Q Consensus 125 l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~~~ 185 (673)
+.+++..|..|.+-|++.+ +.-++.-+...||.+|++|+.|+..+.
T Consensus 22 ~~~e~~~L~eEI~~Lr~qv---------------e~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQV---------------EHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred hHHHHHHHHHHHHHHHHHH---------------HhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666654 345678889999999999999987754
No 111
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=59.28 E-value=16 Score=41.81 Aligned_cols=63 Identities=21% Similarity=0.327 Sum_probs=30.6
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~ 143 (673)
.+++++++.|.. +-.-|...-|.-.++- |-.+.+-+....+|+.|++||+.|+.....+.+..
T Consensus 41 ~ltpee~kalGi---egDTP~DTlrTlva~~--------------k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 41 ELSPEELKALGI---EGDTPADTLRTLVAEV--------------KELRKRLAKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred cCCcchhHhcCC---CCCCccchHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 466777655533 2234544444444421 12222333345566666666666665544444443
No 112
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=58.82 E-value=87 Score=27.87 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 110 RTQMKAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 110 RaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
..+.++...+++-..|+...++-..-+..|..++....++-+..| ..+....+.|..|.|.|..|+.++..
T Consensus 5 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~---~~lp~~~keLL~EIA~lE~eV~~LE~ 75 (88)
T PF14389_consen 5 ALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSP---SSLPKKAKELLEEIALLEAEVAKLEQ 75 (88)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcc---ccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888888888888888888888877665543333 35677888899999999999877654
No 113
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=57.61 E-value=22 Score=33.18 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=16.5
Q ss_pred ChhHHHHHHHHhHhHHHHHHhh
Q 045292 161 SFDEQHLRIENARLREEIDRIS 182 (673)
Q Consensus 161 ~~e~~~L~~Ena~Lk~el~r~~ 182 (673)
-.+..+|+.||..||+.|+++.
T Consensus 35 ~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 35 LEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3456778888888888888763
No 114
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=57.37 E-value=32 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=28.8
Q ss_pred ceEEecCCCceEEEEEEeeeecCcccc-ccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 357 CLIQELPNGYSKVIWVEHVEVDDRSVH-NIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 357 clIq~~~nG~skVtwVeH~e~d~~~v~-~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
+.+.+.++| |.|+|..|++. .+. .+..+++...+.=..++.|+.|.+++|
T Consensus 89 ~~~~~~~~g-t~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 89 WRFEPVGDG-TRVTWTVEFEP---GLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EEEEEETTT-EEEEEEEEEEE---SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCC-EEEEEEEEEEE---eccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 457788877 99999999997 221 222333332222224555666655554
No 115
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.43 E-value=43 Score=34.97 Aligned_cols=49 Identities=33% Similarity=0.505 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 114 KAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 114 Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
|-+...+++..|..+++.+.++...+++.+ .+|..||++|.+++.++-+
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erl---------------------k~le~E~s~LeE~~~~l~~ 191 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERL---------------------KRLEVENSRLEEMLKKLPG 191 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhchh
Confidence 334445566666666777777666666654 6788888888888876543
No 116
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=54.48 E-value=26 Score=31.40 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=33.7
Q ss_pred cceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHH
Q 045292 356 GCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQC 409 (673)
Q Consensus 356 GclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~c 409 (673)
-+-+.+.++|.|+|+|..+.+.... +..+++...+-=+-...|+.|.++|
T Consensus 90 ~~~~~~~~~~~t~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~L~~~~ 139 (140)
T cd07821 90 TIRVTPEGDGGTRVTWTAEFDPPEG----LTDELARAFLTGVYRAGLAALKAAL 139 (140)
T ss_pred EEEEEECCCCccEEEEEEEEecCCC----cchHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557788888899999999887755 3345555544445566666666554
No 117
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=53.00 E-value=1.2 Score=37.35 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=27.5
Q ss_pred ccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeec
Q 045292 60 KRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWF 106 (673)
Q Consensus 60 R~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWF 106 (673)
++|++||+++...+-..+... .....++|+++|+++.++..|-
T Consensus 2 ~~r~~ys~e~K~~~v~~~~~~----g~sv~~va~~~gi~~~~l~~W~ 44 (76)
T PF01527_consen 2 RKRRRYSPEFKLQAVREYLES----GESVSEVAREYGISPSTLYNWR 44 (76)
T ss_dssp -SS----HHHHHHHHHHHHHH----HCHHHHHHHHHTS-HHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCceEeeecccccccccccHHH
Confidence 345679998887776666221 3567789999999999998883
No 118
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=49.85 E-value=29 Score=37.00 Aligned_cols=30 Identities=17% Similarity=0.369 Sum_probs=20.1
Q ss_pred CCChhHHHHHHHHhHhHHHHHHhhhhhhhc
Q 045292 159 EMSFDEQHLRIENARLREEIDRISGIAAKY 188 (673)
Q Consensus 159 ~~~~e~~~L~~Ena~Lk~el~r~~~~~~~~ 188 (673)
.+.+|.+.|+.++.+|++|+..+..+...+
T Consensus 226 ~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 226 ELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566667777777888877777655444
No 119
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=48.91 E-value=43 Score=37.78 Aligned_cols=55 Identities=29% Similarity=0.275 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 115 AQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 115 r~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
..+.++....+.+++..+++|.+.++..+ ...+.+.++|+.||..|.+|.-+..+
T Consensus 22 laq~~k~~s~~~aq~~~~~a~~~ai~a~~--------------~~~E~~l~~Lq~e~~~l~e~~v~~~a 76 (459)
T KOG0288|consen 22 LAQCEKAQSRLSAQLVILRAESRAIKAKL--------------QEKELELNRLQEENTQLNEERVREEA 76 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566778888888899888888776 55566778888999998888877544
No 120
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=46.14 E-value=62 Score=27.67 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHhHhHHHHHHh
Q 045292 161 SFDEQHLRIENARLREEIDRI 181 (673)
Q Consensus 161 ~~e~~~L~~Ena~Lk~el~r~ 181 (673)
..+..+|+.|+..|++|++..
T Consensus 46 ~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 46 YEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346678888888888887653
No 121
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=45.94 E-value=50 Score=35.67 Aligned_cols=27 Identities=26% Similarity=0.355 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 045292 117 HERHENQILKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 117 ~~r~e~~~l~~en~~L~~en~~l~e~~ 143 (673)
++|.+...+..|.+.|..+|.+||+..
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa 271 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQA 271 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666677777777877777777654
No 122
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=45.70 E-value=1.9e+02 Score=33.31 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=53.6
Q ss_pred ccccChhHHHHHHHh-HhcC-CCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 045292 62 YHRHTQRQIQEMEAF-FKEC-PHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENNRY 139 (673)
Q Consensus 62 RtrfT~~Ql~~LE~~-F~~~-~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l 139 (673)
--++|.+....|.+. |... .+|.-+.-+++-++. |.|.|+|+-.+|..+.++++.+-.+....
T Consensus 218 ~L~LteeEkrLL~kEG~slPs~lPLTKaEEriLKrv--------------RRKIrNK~SAQESRrkKkeYid~LE~rv~- 282 (472)
T KOG0709|consen 218 PLVLTEEEKRLLTKEGYSLPSKLPLTKAEERILKRV--------------RRKIRNKRSAQESRRKKKEYIDGLESRVS- 282 (472)
T ss_pred ceeccHHHHHHHHhccCcCcccCCchHHHHHHHHHH--------------HHHHHhhhhhHHHHHhHhhHHHHHhhhhh-
Confidence 446888888888665 3222 345555555555444 44445544445555555554333221100
Q ss_pred HHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhhhhh
Q 045292 140 KEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAA 186 (673)
Q Consensus 140 ~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~~~~ 186 (673)
.|-. -.-++.++.++|..+|.-|-++|.++.++..
T Consensus 283 ----------~~ta--eNqeL~kkV~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 283 ----------AFTA--ENQELQKKVEELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred ----------hccc--CcHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 0110 0123456678899999999999988776543
No 123
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.40 E-value=69 Score=36.94 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHH
Q 045292 106 FQNKRTQMKAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEID 179 (673)
Q Consensus 106 FQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~ 179 (673)
|-.+..+.+-.+.+.....+++++++++.|.+.+.... .+.+...+.|..||.+|+++++
T Consensus 62 FddkVnqSALteqQ~kasELEKqLaaLrqElq~~saq~--------------~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 62 FDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLNKQR--------------GDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444544445556667777777776665333332 2334455678889999998874
No 124
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=45.24 E-value=55 Score=35.18 Aligned_cols=44 Identities=30% Similarity=0.322 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHH
Q 045292 119 RHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDR 180 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r 180 (673)
-.+...+..+|+.|++++..+.+.. .+.++|+.||.+||+.|.-
T Consensus 65 ~~~~~~~~~en~~Lk~~l~~~~~~~------------------~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 65 LKSLKDLALENEELKKELAELEQLL------------------EEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHhHHHHHHhHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHhCC
Confidence 3455566667777777766665443 4567788888888888763
No 125
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=44.76 E-value=10 Score=47.98 Aligned_cols=87 Identities=18% Similarity=0.192 Sum_probs=65.9
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENN 137 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~ 137 (673)
.+-.+++++.-|...|..+|+...+|.-.++..++.-|++..|.+-.||+++++++.+...+. ++-.
T Consensus 444 ~~~~s~r~~~~~t~~L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~-------------arg~ 510 (1406)
T KOG1146|consen 444 PLLESKRSLEGQTVVLHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRL-------------ARGE 510 (1406)
T ss_pred hhhhhhcccccceeeeecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccc-------------cccc
Confidence 344567788999999999999999999999999999999999999999999888888754332 1112
Q ss_pred HHHHhhCCCCCCCCCCCCCC
Q 045292 138 RYKEALGNATCPNCGGPAAL 157 (673)
Q Consensus 138 ~l~e~~~~~~C~~Cggp~~~ 157 (673)
...--....-|-.|...+..
T Consensus 511 ~~~~~~~p~~C~~C~~sttt 530 (1406)
T KOG1146|consen 511 VYRCPGKPYPCRACNYSTTT 530 (1406)
T ss_pred cccCCCCcccceeeeeeeec
Confidence 22223344458888877643
No 126
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=44.53 E-value=77 Score=39.14 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=39.2
Q ss_pred HHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhhhhh
Q 045292 124 ILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAA 186 (673)
Q Consensus 124 ~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~~~~ 186 (673)
.++..++.|..+..-|+.++.+. |....+.-+.+..||..+|+|||+-|-|+..+.+
T Consensus 336 ~lkEr~deletdlEILKaEmeek------G~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA 392 (1243)
T KOG0971|consen 336 ALKERVDELETDLEILKAEMEEK------GSDGQAASSYQFKQLEQQNARLKDALVRLRDLSA 392 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc------CCCCcccchHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 34444555556666667777555 3333344578999999999999999998876543
No 127
>PF15058 Speriolin_N: Speriolin N terminus
Probab=42.83 E-value=46 Score=33.94 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=29.5
Q ss_pred HHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 122 NQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 122 ~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
+.-++.++++|..||.+||+.. +|..||++||.-|...+.
T Consensus 7 yeGlrhqierLv~ENeeLKKlV----------------------rLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLV----------------------RLIRENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHH----------------------HHHHHHHHHHHHHHHhhc
Confidence 3456677888888888888764 477888988887766554
No 128
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=42.44 E-value=11 Score=35.14 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCC
Q 045292 121 ENQILKAENQKLRAENNRYKEALGNATCPNCGG 153 (673)
Q Consensus 121 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cgg 153 (673)
.|++++.++..|++-...|...++...|..|-+
T Consensus 43 knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~V 75 (120)
T PF10482_consen 43 KNQQLREQQKTLHENIKVLENRLRAGLCDRCTV 75 (120)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 456777777788888888889999999999975
No 129
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=41.68 E-value=48 Score=29.73 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.6
Q ss_pred ceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 357 CLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 357 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
+.+.+.++|.|+|+|..... .....++.+++...+.=+-+.|++.|.++||
T Consensus 91 ~~~~~~~~~~T~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 91 FELEPLGDGGTRFVHRETFS---GLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred EEEEEcCCCcEEEEEeeEEE---EEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 34677767889998864222 1122345666777777888888888888875
No 130
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=41.11 E-value=18 Score=32.72 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=26.7
Q ss_pred EEEEeecccCChhhHhhhhcccCccchhhh
Q 045292 491 SAATSFWIPVPPRRIFDFLRDENSRSEWDI 520 (673)
Q Consensus 491 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 520 (673)
....|+.++.||..||++|.|.....+|.-
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p 32 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVEAYPEWSP 32 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChhhhhhhCc
Confidence 346788999999999999999999999983
No 131
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=40.98 E-value=35 Score=27.73 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=31.0
Q ss_pred cChhHHHHHHHhHhcCCC--CChHHHHHHHHHhCCCccc
Q 045292 65 HTQRQIQEMEAFFKECPH--PDDKQRKELSRELGLEPLQ 101 (673)
Q Consensus 65 fT~~Ql~~LE~~F~~~~~--Ps~~~r~~LA~~LgLs~rQ 101 (673)
+|+.|.+.|...|+..-| |-.....+||+++|+++.-
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA~~lgis~st 39 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELAEELGISKST 39 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHHHHhCCCHHH
Confidence 578999999999988754 6667778999999999854
No 132
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=40.98 E-value=15 Score=32.84 Aligned_cols=27 Identities=33% Similarity=0.640 Sum_probs=24.4
Q ss_pred EEeecccCChhhHhhhhcccCccchhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
..++-++.||..||++|.|-.+..+|.
T Consensus 2 ~~~~~i~ap~~~Vw~~l~d~~~~~~w~ 28 (140)
T cd08865 2 EESIVIERPVEEVFAYLADFENAPEWD 28 (140)
T ss_pred ceEEEEcCCHHHHHHHHHCccchhhhc
Confidence 356778999999999999999999997
No 133
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=40.65 E-value=40 Score=37.24 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=24.3
Q ss_pred HHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHH
Q 045292 121 ENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEID 179 (673)
Q Consensus 121 e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~ 179 (673)
....+++||++|++||..|+.++ .+.+.++.||.+|++.+.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l------------------~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERL------------------KSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHhhc
Confidence 34456666666666666665554 123456677887775543
No 134
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=39.90 E-value=70 Score=29.29 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=34.9
Q ss_pred eEEecCC-CceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 358 LIQELPN-GYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 358 lIq~~~n-G~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
-+++.++ |.+.|+|--|++... .+ +-++++.-+-=+.++.+++|+++||
T Consensus 94 ~~~~~~~~~~t~v~~~~~~~~~~-~~---p~~l~~~~~~~~~~~~l~~lr~~ae 143 (144)
T cd08866 94 RLEPLADGGGTLLTYEVEVKPDF-FA---PVFLVEFVLRQDLPTNLLAIRAEAE 143 (144)
T ss_pred EEEECCCCCeEEEEEEEEEEeCC-CC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678887 789999977777543 33 3366766666677788888877776
No 135
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=39.89 E-value=25 Score=31.57 Aligned_cols=133 Identities=19% Similarity=0.248 Sum_probs=67.5
Q ss_pred EEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeeccCCCCCCceEEEEEeccCCCCCCceeEEeeeccCCCCcE
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANSSQSNMLVLQESCTDSTGSY 572 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsll~~~~~~~~~~~~~iLQes~~D~sgs~ 572 (673)
..++-+|+||+.||++|.|.....+|.- .+..+-.+. +.++ -....++..+. ..+-.+-.-.|+.+..
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~-----~~~~~~~~~-~~~~-~~~~~~~~~g~-----~~~~~~i~~~~~~~~~ 72 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWP-----GVKSVELLS-GGGP-GTERTVRVAGR-----GTVREEITEYDPEPRR 72 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTST-----TEEEEEEEE-ECST-EEEEEEEECSC-----SEEEEEEEEEETTTTE
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhh-----ceEEEEEcc-cccc-ceeEEEEeccc-----cceeEEEEEecCCCcE
Confidence 4567789999999999999999999973 223332222 1111 11244544321 2334444444544566
Q ss_pred EEEeecchhhhhhhhcCCCCCCCcccCCccEEcCCCCCCCCCCccccCCCCceeEEeeehhccCCccccc-ccchhhhhh
Q 045292 573 VIYAPVDIVAMNMVLSGGDPDYVALLPSGFAILPDGPGFNGGGILEVGSGGSLLTVAFQILVDSVPTAKL-SLGSVATVN 651 (673)
Q Consensus 573 vVyAPvD~~~~~~vm~G~d~~~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQ~l~~~~~~a~~-~~~sv~tv~ 651 (673)
+.|.-+ . .+.. -+=.-|.+.|+| +||.+|.-+.+-. .....+ ..---..+.
T Consensus 73 ~~~~~~--~-------~~~~----~~~~~~~~~~~~-------------~gt~v~~~~~~~~--~~~~~~~~~~~~~~~~ 124 (139)
T PF10604_consen 73 ITWRFV--P-------SGFT----NGTGRWRFEPVG-------------DGTRVTWTVEFEP--GLPGWLAGPLLRPAVK 124 (139)
T ss_dssp EEEEEE--S-------SSSC----EEEEEEEEEEET-------------TTEEEEEEEEEEE--SCTTSCHHHHHHHHHH
T ss_pred EEEEEE--e-------ccee----EEEEEEEEEEcC-------------CCEEEEEEEEEEE--eccchhhHHHHHHHHH
Confidence 666543 0 0000 001113444421 3588876666654 111222 111223445
Q ss_pred hhhhhHHHHHHHHc
Q 045292 652 SLIKCTVERIKAAV 665 (673)
Q Consensus 652 ~li~~tv~~Ik~Al 665 (673)
..+...++++|+.+
T Consensus 125 ~~~~~~l~~l~~~~ 138 (139)
T PF10604_consen 125 RIVREALENLKRAA 138 (139)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 56777888888765
No 136
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=39.51 E-value=12 Score=35.10 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=23.4
Q ss_pred EeecccCChhhHhhhhcccCccchhh
Q 045292 494 TSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 494 tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
-++.+|.||++||+||.|......|.
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~ 28 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCL 28 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcC
Confidence 47889999999999999999888885
No 137
>smart00340 HALZ homeobox associated leucin zipper.
Probab=39.47 E-value=30 Score=26.93 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=13.8
Q ss_pred HHHHHHHhHhHHHHHHhhh
Q 045292 165 QHLRIENARLREEIDRISG 183 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~r~~~ 183 (673)
+.|..||.||+.|++.+.+
T Consensus 15 e~LteeNrRL~ke~~eLra 33 (44)
T smart00340 15 ESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4567777788888777766
No 138
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.41 E-value=40 Score=36.91 Aligned_cols=20 Identities=45% Similarity=0.547 Sum_probs=9.3
Q ss_pred HHHHHHHhHHHHHHhHHHHH
Q 045292 122 NQILKAENQKLRAENNRYKE 141 (673)
Q Consensus 122 ~~~l~~en~~L~~en~~l~e 141 (673)
+..|++||++|+.||..|+.
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~ 53 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKI 53 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHH
Confidence 34444444444444444443
No 139
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=37.63 E-value=53 Score=30.40 Aligned_cols=51 Identities=16% Similarity=0.068 Sum_probs=30.7
Q ss_pred EEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 359 IQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 359 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
+++. +|+|+|+|..+.++.-.....++.+++...+.=...+.|..|.+++|
T Consensus 99 ~~~~-~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 149 (150)
T cd07818 99 LEPV-GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLE 149 (150)
T ss_pred EEEc-CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 5667 45699999999887755444455555544433334555555555444
No 140
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=36.76 E-value=24 Score=31.66 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=24.2
Q ss_pred EEeecccCChhhHhhhhcccCccchhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
..+.-+++||+.||++|.|..+..+|.
T Consensus 4 ~~~~~i~a~~~~V~~~l~d~~~~~~w~ 30 (140)
T cd07821 4 TVSVTIDAPADKVWALLSDFGGLHKWH 30 (140)
T ss_pred EEEEEECCCHHHHHHHHhCcCchhhhc
Confidence 356778999999999999999999997
No 141
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=36.12 E-value=22 Score=32.12 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=25.5
Q ss_pred EEeecccCChhhHhhhhcccCccchhhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWDI 520 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 520 (673)
..++.++.||+.||++|.|.....+|.-
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~~~~w~~ 30 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFENLPRFMS 30 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhhhHHHhh
Confidence 4678889999999999999999999984
No 142
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=36.10 E-value=41 Score=33.56 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=4.1
Q ss_pred HHHHHHHHhHhHHHHHHh
Q 045292 164 EQHLRIENARLREEIDRI 181 (673)
Q Consensus 164 ~~~L~~Ena~Lk~el~r~ 181 (673)
.+.|++|++|||||+..+
T Consensus 26 KE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHCH----------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 143
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.90 E-value=77 Score=32.64 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=10.6
Q ss_pred HHHHhHHHHHHhHHHHHhh
Q 045292 125 LKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 125 l~~en~~L~~en~~l~e~~ 143 (673)
.++....|+++|+.|++++
T Consensus 130 ~~~~~~~L~~~n~~L~~~l 148 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQL 148 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555666666665554
No 144
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=35.81 E-value=20 Score=33.31 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=25.5
Q ss_pred EEEeecccCChhhHhhhhcccCccchh
Q 045292 492 AATSFWIPVPPRRIFDFLRDENSRSEW 518 (673)
Q Consensus 492 A~tS~wLpv~p~~vf~fLrd~~~R~eW 518 (673)
|.+++.++.||++||+.|-|+.+-.+|
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W 28 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKF 28 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccc
Confidence 678999999999999999999999998
No 145
>KOG3755 consensus SATB1 matrix attachment region binding protein [Transcription]
Probab=35.45 E-value=9.4 Score=44.58 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHhHhcCCCCChHHHHHHHHHhCC-------CcccEEeecccchhHHHHHH
Q 045292 74 EAFFKECPHPDDKQRKELSRELGL-------EPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 74 E~~F~~~~~Ps~~~r~~LA~~LgL-------s~rQVkvWFQNRRaK~Kr~~ 117 (673)
+..|-++++++.....+--+++.+ ..+.|++||.|||.+.|+.+
T Consensus 708 ~~w~~k~~s~s~~~v~eYkee~~~~~~~e~~~~kn~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 708 HHWKLKTRSGSWVDVAEYKEEELLMPYEEKFESKNVQFWFKVRREEEKRLK 758 (769)
T ss_pred hhheecccCchhHHHHHhhHHhhcchhhhhhhhcchHHHHHHHHHHHhhhh
Confidence 555667777877766665555544 45789999999999999853
No 146
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=35.20 E-value=26 Score=32.23 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=24.1
Q ss_pred EEeecccCChhhHhhhhcccCccchhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
..+.-++.||+.||++|-|..+..+|.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~~~~W~ 29 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRRHPEID 29 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccccceeC
Confidence 356667999999999999999999997
No 147
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.86 E-value=94 Score=27.98 Aligned_cols=52 Identities=10% Similarity=0.025 Sum_probs=30.5
Q ss_pred EEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 359 IQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 359 Iq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
+++.++|.|+||+--|.+......-.++-+++..-.-=..+.+|..|.++.|
T Consensus 87 f~~~~~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 87 FRPAPGRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred EEECCCCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 4677777899999999887643332344444433333344555555555443
No 148
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=34.72 E-value=22 Score=32.72 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=25.2
Q ss_pred EEeecccCChhhHhhhhcccCccchhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
.+++.++.||..||+.|.|-.+..+|.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~ 28 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFI 28 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhC
Confidence 468899999999999999999999998
No 149
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=34.50 E-value=89 Score=33.34 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=7.3
Q ss_pred HHHHHHHhHhHHHHH
Q 045292 165 QHLRIENARLREEID 179 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~ 179 (673)
++|+.|+..|++-+.
T Consensus 239 ~~l~~el~~~~~~~~ 253 (269)
T KOG3119|consen 239 EQLKKELATLRRLFL 253 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555554443
No 150
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=34.25 E-value=1.1e+02 Score=31.98 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=9.3
Q ss_pred hHHHHHHHHhHhHHHHHHhh
Q 045292 163 DEQHLRIENARLREEIDRIS 182 (673)
Q Consensus 163 e~~~L~~Ena~Lk~el~r~~ 182 (673)
+...|+.+-+.+.+|++|+.
T Consensus 180 ~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 180 KVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHcccHHHHHH
Confidence 33344444444455555543
No 151
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=34.13 E-value=27 Score=31.55 Aligned_cols=30 Identities=23% Similarity=0.526 Sum_probs=26.2
Q ss_pred EEEEeecccCChhhHhhhhcccCccchhhh
Q 045292 491 SAATSFWIPVPPRRIFDFLRDENSRSEWDI 520 (673)
Q Consensus 491 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 520 (673)
+...++-++.||..||+++.|.....+|.-
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~ 31 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTP 31 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccC
Confidence 345678899999999999999999999983
No 152
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=33.92 E-value=18 Score=32.81 Aligned_cols=27 Identities=26% Similarity=0.453 Sum_probs=24.4
Q ss_pred EeecccCChhhHhhhhcccCccchhhh
Q 045292 494 TSFWIPVPPRRIFDFLRDENSRSEWDI 520 (673)
Q Consensus 494 tS~wLpv~p~~vf~fLrd~~~R~eWd~ 520 (673)
.++-++.||+.||+||.|..+..+|.-
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p 31 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIP 31 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhcc
Confidence 567789999999999999999999983
No 153
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.92 E-value=97 Score=35.73 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 045292 116 QHERHENQILKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 116 ~~~r~e~~~l~~en~~L~~en~~l~e~~ 143 (673)
++.|.+...+.++|+.|++||++|++..
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456677778888888888888887654
No 154
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=33.80 E-value=1.1e+02 Score=33.09 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=16.8
Q ss_pred CCCChhHHHHHHHHhHhHHHHHHhhhh
Q 045292 158 GEMSFDEQHLRIENARLREEIDRISGI 184 (673)
Q Consensus 158 ~~~~~e~~~L~~Ena~Lk~el~r~~~~ 184 (673)
+.++..+++||.+-..|.+|++.+..+
T Consensus 258 ~~Le~rN~~LK~qa~~lerEI~ylKql 284 (294)
T KOG4571|consen 258 EGLEKRNEELKDQASELEREIRYLKQL 284 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777766777777666543
No 155
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.76 E-value=62 Score=33.30 Aligned_cols=15 Identities=47% Similarity=0.415 Sum_probs=5.6
Q ss_pred HHHHhHHHHHHhHHH
Q 045292 125 LKAENQKLRAENNRY 139 (673)
Q Consensus 125 l~~en~~L~~en~~l 139 (673)
|+.+|+.|+++...+
T Consensus 137 L~~~n~~L~~~l~~~ 151 (206)
T PRK10884 137 LKEENQKLKNQLIVA 151 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 156
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=33.66 E-value=35 Score=34.18 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=28.1
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHH
Q 045292 145 NATCPNCGGPAALGEMSFDEQHLRIENARLREEIDR 180 (673)
Q Consensus 145 ~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r 180 (673)
.-.||.||++...-+-+...+.|+....+|++++.+
T Consensus 136 ~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~~~ 171 (178)
T PRK06266 136 GFRCPQCGEMLEEYDNSELIKELKEQIKELEEELKL 171 (178)
T ss_pred CCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHhcc
Confidence 456999999988777777777788888888888764
No 157
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=33.11 E-value=76 Score=28.27 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=29.9
Q ss_pred eEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 358 LIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 358 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
-+.+.++ +|.|+|-.+++. ..+..++.+++...+.=+-++++..|.+.+|
T Consensus 90 ~~~~~~~-~t~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e 139 (140)
T cd08865 90 TFEPVGG-GTRVRYTAELEP--GGFARLLDPLMAPAFRRRARAALENLKALLE 139 (140)
T ss_pred EEEEcCC-ceEEEEEEEEcc--chhHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 3667766 499999998876 3333455555544444445556666655443
No 158
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=32.43 E-value=76 Score=28.97 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=29.6
Q ss_pred eEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 358 LIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 358 lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
.+++.++|.|+|||.-+++.... ++ +.-+++..-+.=--.+.|++|.+++|
T Consensus 91 ~~~~~~~~~t~Vt~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~lk~~~E 141 (142)
T cd08861 91 RFEPLGGGGTRVTLRHDFTLGID-SP-EAVPWIRRALDRNSRAELAALRAAAE 141 (142)
T ss_pred EEEECCCCcEEEEEEEEEEECCC-Cc-hhHHHHHHHHccccHHHHHHHHHHhh
Confidence 46777778899999999987632 22 33333322222233455555555544
No 159
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=31.98 E-value=27 Score=30.10 Aligned_cols=26 Identities=38% Similarity=0.838 Sum_probs=23.4
Q ss_pred EeecccCChhhHhhhhcccCccchhh
Q 045292 494 TSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 494 tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
.++-++.||+.||++|.|..+..+|.
T Consensus 3 ~~~~i~a~~~~v~~~l~d~~~~~~~~ 28 (141)
T cd07812 3 ASIEIPAPPEAVWDLLSDPERWPEWS 28 (141)
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhC
Confidence 46677999999999999999999997
No 160
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=31.96 E-value=1.5e+02 Score=26.44 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=22.6
Q ss_pred ccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccch
Q 045292 62 YHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 110 (673)
Q Consensus 62 RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRR 110 (673)
+..|+.+++..|..... .+.+|++..+++-+++...
T Consensus 36 ~R~y~~~di~~l~~i~~-------------lr~~g~~l~~i~~~~~~~~ 71 (103)
T cd01106 36 YRLYTEEDLERLQQILF-------------LKELGFSLKEIKELLKDPS 71 (103)
T ss_pred ceeeCHHHHHHHHHHHH-------------HHHcCCCHHHHHHHHHcCc
Confidence 44699999988854432 3445666666666665543
No 161
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.33 E-value=1.2e+02 Score=26.40 Aligned_cols=59 Identities=24% Similarity=0.312 Sum_probs=40.3
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhhh
Q 045292 120 HENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGI 184 (673)
Q Consensus 120 ~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~~ 184 (673)
..-..|+.||-.|+-...-|.+.+. -.+|....++..+.-.|+.|++.|+.|+++....
T Consensus 7 ~~i~~L~KENF~LKLrI~fLee~l~------~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~ 65 (75)
T PF07989_consen 7 EQIDKLKKENFNLKLRIYFLEERLQ------KLGPESIEELLKENIELKVEVESLKRELQEKKKL 65 (75)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH------hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777774 2234444555666777888888888888876543
No 162
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=31.28 E-value=24 Score=31.83 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.3
Q ss_pred EEeecccCChhhHhhhhcccCccchhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
..|+.++.||+.||++|.|..+.++|.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~~~~w~ 29 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPELLAQWF 29 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHHHHhhh
Confidence 357778999999999999999999996
No 163
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=31.22 E-value=62 Score=33.69 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=39.2
Q ss_pred CCCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeeccc-CChhhHhhhhcccCccchhhh
Q 045292 454 ASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIP-VPPRRIFDFLRDENSRSEWDI 520 (673)
Q Consensus 454 ~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~ 520 (673)
+-++.+|..+... .+++|....-+ ..| | =...|-+ -++ ++|..|+||+-|..-|.+||.
T Consensus 25 ~~~~~~We~~~~k--~~~~i~~q~~~-~~g-~-~~Yk~~~---vfeDvtp~~~~Dv~~D~eYRkkWD~ 84 (219)
T KOG2761|consen 25 CDAGQGWELVMDK--STPSIWRQRRP-KTG-L-YEYKSRT---VFEDVTPEIVRDVQWDDEYRKKWDD 84 (219)
T ss_pred cCcccchhhhccc--CCceEEEEccc-CCC-C-EEEEEEE---EEcCCCHHHHHHHHhhhHHHHHHHH
Confidence 5677899877433 35556552111 123 2 2344443 345 999999999999999999995
No 164
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=30.38 E-value=87 Score=28.95 Aligned_cols=31 Identities=26% Similarity=0.580 Sum_probs=26.6
Q ss_pred EEEeecccCChhhHhhhhcccCccchhhhhc
Q 045292 492 AATSFWIPVPPRRIFDFLRDENSRSEWDILS 522 (673)
Q Consensus 492 A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~ 522 (673)
...|+-++.||++||+++.|..+..+|.-..
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~ 34 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKNWPEWSPWE 34 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCcccCcccCchh
Confidence 3567778999999999999999999998533
No 165
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=29.76 E-value=67 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=21.4
Q ss_pred cEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Q 045292 101 QVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENNRYKEA 142 (673)
Q Consensus 101 QVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~ 142 (673)
+...||++.=- .+-.+.+++...+++++++++++|..|+..
T Consensus 16 ~y~l~~g~~G~-~~~~~l~~q~~~~~~e~~~l~~~n~~L~~e 56 (105)
T PRK00888 16 QYSLWFGKNGI-LDYWRVNDQVAAQQQTNAKLKARNDQLFAE 56 (105)
T ss_pred HHHHhccCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578865411 111122344555666677777666665544
No 166
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.60 E-value=3.8e+02 Score=23.94 Aligned_cols=115 Identities=15% Similarity=0.189 Sum_probs=57.8
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCe--EEEEEEecCCCC
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGT--WAVVDVSLDNLR 343 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~--w~VvDvSld~~~ 343 (673)
|.+.|.+.+|.+.. ++++..+.. |.-...+ +.+ ...+.++-+.++|...- +.. |-+.+ +.
T Consensus 23 D~~~~~~w~p~~~~----~~~~~~~~~----~~~~~~~--~~~--~~~~~~~~~~~~~~~~~-~~~i~~~~~~----~~- 84 (140)
T cd07819 23 DVEAYPEWSPKVKS----VEVLLRDND----GRPEMVR--IGV--GAYGIKDTYALEYTWDG-AGSVSWTLVE----GE- 84 (140)
T ss_pred ChhhhhhhCcceEE----EEEeccCCC----CCEEEEE--EEE--eeeeEEEEEEEEEEEcC-CCcEEEEEec----cc-
Confidence 89999999998643 555554432 2211222 222 12244555556765532 222 22211 11
Q ss_pred CCCCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHH
Q 045292 344 PSPTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQ 408 (673)
Q Consensus 344 ~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ 408 (673)
.+..+. .-+-+.+.++ +|+|+|.-+++..- .+ ...++..-.--+.+.-+..|.++
T Consensus 85 --~~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~~ 139 (140)
T cd07819 85 --GNRSQE---GSYTLTPKGD-GTRVTFDLTVELTV-PL---PGFLKRKAEPLVLDEALKGLKKR 139 (140)
T ss_pred --ceeEEE---EEEEEEECCC-CEEEEEEEEEEecC-CC---CHHHHHHhhhHHHHHHHHhHhhh
Confidence 111111 2356788877 59999999998743 23 33334333344444555555443
No 167
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.58 E-value=99 Score=30.28 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=24.3
Q ss_pred EEeecccchhHH-----HHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 045292 102 VKFWFQNKRTQM-----KAQHERHENQILKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 102 VkvWFQNRRaK~-----Kr~~~r~e~~~l~~en~~L~~en~~l~e~~ 143 (673)
.+|||.|...-. .-.....+...++.++..+..+...+...+
T Consensus 56 qkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 56 QKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred eEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888765422 222233445666666666666666666655
No 168
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=29.29 E-value=1.2e+02 Score=31.08 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=31.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHH
Q 045292 108 NKRTQMKAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEI 178 (673)
Q Consensus 108 NRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el 178 (673)
||+--...++...+++.|-.+.+.|..||..+.... +.+....++|..+++-|+.++
T Consensus 83 ~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~--------------~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 83 NRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAER--------------DGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh--------------hhHHHHHHHHHHhhHHHHHHH
Confidence 344444444455555556666666666665555443 334455556666666666665
No 169
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=29.17 E-value=1.2e+02 Score=27.85 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=63.9
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCCC
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRPS 345 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~~ 345 (673)
|.+.|.+.+|++.. +++++.+. ++ +.+++.+..|. -.|++. .|++-. .+. .+ -=.++++.
T Consensus 20 D~~~~~~~~p~~~~----~~vl~~~~----~~----~~~~~~~~~~~-~~~~~~-~~~~~~-~~~-~i-~~~~~~g~--- 79 (138)
T cd07813 20 DVERYPEFLPWCTA----SRVLERDE----DE----LEAELTVGFGG-IRESFT-SRVTLV-PPE-SI-EAELVDGP--- 79 (138)
T ss_pred HHHhhhhhcCCccc----cEEEEcCC----CE----EEEEEEEeecc-ccEEEE-EEEEec-CCC-EE-EEEecCCC---
Confidence 88899999999855 56666433 12 22222333232 234443 343321 233 32 11223321
Q ss_pred CCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 045292 346 PTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCER 411 (673)
Q Consensus 346 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~ 411 (673)
+ ..+=--..+++.++|.|+|+|.-|++..-. ++.++++.-+.=..++-|.++.+.|++
T Consensus 80 -~---~~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~f~~~~~~ 137 (138)
T cd07813 80 -F---KHLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDAFEKRAKQ 137 (138)
T ss_pred -h---hhceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 112234567889999999999999998632 333444333333466777777776664
No 170
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=28.13 E-value=20 Score=26.55 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=30.8
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccc
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNK 109 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNR 109 (673)
.+++.+...++..|... ..-.++|..+|++...|+.|...-
T Consensus 10 ~l~~~~~~~~~~~~~~~-----~~~~~ia~~~~~s~~~i~~~~~~~ 50 (55)
T cd06171 10 KLPEREREVILLRFGEG-----LSYEEIAEILGISRSTVRQRLHRA 50 (55)
T ss_pred hCCHHHHHHHHHHHhcC-----CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46788888888887533 245678999999999998876543
No 171
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=27.77 E-value=2.5e+02 Score=23.96 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhh
Q 045292 122 NQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRIS 182 (673)
Q Consensus 122 ~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~ 182 (673)
-..|-..++.|+.||..|++.. ..+..|++.|.+..+-+.
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~---------------------~~~~~ER~~L~ekne~Ar 48 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQE---------------------KTWREERAQLLEKNEQAR 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Confidence 3455556667777777776643 456667777766655443
No 172
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=27.60 E-value=38 Score=26.17 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=28.1
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEee
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFW 105 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvW 105 (673)
.+++.+...|...|... ..-.++|+.+|++...|+.+
T Consensus 4 ~L~~~er~vi~~~y~~~-----~t~~eIa~~lg~s~~~V~~~ 40 (50)
T PF04545_consen 4 QLPPREREVIRLRYFEG-----LTLEEIAERLGISRSTVRRI 40 (50)
T ss_dssp TS-HHHHHHHHHHHTST------SHHHHHHHHTSCHHHHHHH
T ss_pred hCCHHHHHHHHHHhcCC-----CCHHHHHHHHCCcHHHHHHH
Confidence 47889999999999433 34678999999999877654
No 173
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=27.49 E-value=44 Score=29.96 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=23.7
Q ss_pred EeecccCChhhHhhhhcccCccchhh
Q 045292 494 TSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 494 tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
.+.-++.||+.||++|.|..+..+|.
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~ 29 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWN 29 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccC
Confidence 46667999999999999999999998
No 174
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=27.39 E-value=2e+02 Score=22.94 Aligned_cols=38 Identities=34% Similarity=0.530 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHH
Q 045292 109 KRTQMKAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREE 177 (673)
Q Consensus 109 RRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~e 177 (673)
+|.+.|+ +.....+..+...|..+|.. |+.+++.|+.|
T Consensus 17 ~r~R~rk---k~~~~~le~~~~~L~~en~~----------------------------L~~~i~~L~~E 54 (54)
T PF07716_consen 17 RRSRQRK---KQREEELEQEVQELEEENEQ----------------------------LRQEIAQLERE 54 (54)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHhcc
No 175
>PHA03162 hypothetical protein; Provisional
Probab=27.32 E-value=33 Score=32.94 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=20.2
Q ss_pred CCCCCChhHHHHHHHHhHhHHHHHH
Q 045292 156 ALGEMSFDEQHLRIENARLREEIDR 180 (673)
Q Consensus 156 ~~~~~~~e~~~L~~Ena~Lk~el~r 180 (673)
..+++..+.++|+.||..||+.+.+
T Consensus 14 tmEeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 14 TMEDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888888999999999988764
No 176
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=26.95 E-value=99 Score=32.63 Aligned_cols=49 Identities=33% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHH
Q 045292 118 ERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDR 180 (673)
Q Consensus 118 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r 180 (673)
...++..|+.+|+.|++.|+.|.... .++..+.+.|+.|.+.||++.+.
T Consensus 102 L~een~~L~~en~~Lr~~n~~L~~~n--------------~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 102 LTEENEILQNENDSLRAINESLLAKN--------------HELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh--------------HHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555666666666666655554433 22333456788899999987653
No 177
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.87 E-value=2.2e+02 Score=29.63 Aligned_cols=48 Identities=19% Similarity=0.317 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhhhhh
Q 045292 119 RHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIAA 186 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~~~~ 186 (673)
+.-..+++...++++.|...+... +-..|+.||..|+.|++|+..-..
T Consensus 93 ~~v~~QQ~~~f~kiRsel~S~e~s--------------------EF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 93 EKVSYQQKVDFAKIRSELVSIERS--------------------EFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888887776443 345588888888888888766433
No 178
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=25.86 E-value=2.7e+02 Score=22.84 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=9.4
Q ss_pred HHHHHHHHhHhHHHHHHh
Q 045292 164 EQHLRIENARLREEIDRI 181 (673)
Q Consensus 164 ~~~L~~Ena~Lk~el~r~ 181 (673)
...|+.++..|++++..+
T Consensus 42 n~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 42 NEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555544
No 179
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=25.54 E-value=1.2e+02 Score=27.84 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=15.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHH
Q 045292 108 NKRTQMKAQHERHENQILKAENQKLRAENNRYK 140 (673)
Q Consensus 108 NRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~ 140 (673)
.+..+.+....++++..++++|+.|+.|...|+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333344444445555555555555554443
No 180
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=24.67 E-value=1.4e+02 Score=27.81 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=12.9
Q ss_pred hhHHHHHHHHhHhHHHHHH
Q 045292 162 FDEQHLRIENARLREEIDR 180 (673)
Q Consensus 162 ~e~~~L~~Ena~Lk~el~r 180 (673)
-+...|++||..||+-|..
T Consensus 36 EEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 36 EENTALRLENEKLRERLGE 54 (114)
T ss_pred HhhHHHHhhHHHHHHHhCC
Confidence 3456677777777777654
No 181
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=24.63 E-value=97 Score=36.18 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=15.2
Q ss_pred HHHHHHHhHHHHHHhHHHHHhh
Q 045292 122 NQILKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 122 ~~~l~~en~~L~~en~~l~e~~ 143 (673)
-+++-+||+.|+.||..|+..+
T Consensus 311 Lq~ll~Ene~Lk~ENatLk~qL 332 (655)
T KOG4343|consen 311 LQALLSENEQLKKENATLKRQL 332 (655)
T ss_pred HHHHHHHHHHHHhhhHHHHHHH
Confidence 3456677777777777777665
No 182
>PHA01817 hypothetical protein
Probab=24.26 E-value=1e+02 Score=33.53 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCcc
Q 045292 237 ADKPMIVELAVAAMEEFLRMAQAGDPLW 264 (673)
Q Consensus 237 ~~~~~~~~lA~~Am~El~~la~~~~plW 264 (673)
..-+-++.||..||.||+++.+ +.--|
T Consensus 210 dsgssllalakqamqellkkvq-dalqw 236 (479)
T PHA01817 210 DSGSSLLALAKQAMQELLKKVQ-DALQW 236 (479)
T ss_pred CcchhHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 3456789999999999999987 33344
No 183
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.14 E-value=69 Score=32.27 Aligned_cols=38 Identities=32% Similarity=0.458 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 146 ATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 146 ~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
-.||.||.....-+-+.....|..+..+|.+++++...
T Consensus 133 F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~~l~~~~~ 170 (176)
T COG1675 133 FTCPKCGEDLEEYDSSEEIEELESELDELEEELERNDK 170 (176)
T ss_pred CCCCCCCchhhhccchHHHHHHHHHHHHHHHHHhcccc
Confidence 46999999887777778888888888888888887554
No 184
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=24.14 E-value=96 Score=34.25 Aligned_cols=73 Identities=15% Similarity=0.304 Sum_probs=45.5
Q ss_pred ecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhhh
Q 045292 105 WFQNKRTQMKAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGI 184 (673)
Q Consensus 105 WFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~~ 184 (673)
||=-=|.++|+ .+....+.|+....|+.+.+..|++-- . ...+.+.|.+||+..|..|+.+|-++.++
T Consensus 54 wff~i~~re~q-lk~aa~~llq~kirk~~e~~eglr~i~-----e------s~~e~q~e~~qL~~qnqkL~nqL~~~~~v 121 (401)
T PF06785_consen 54 WFFAIGRREKQ-LKTAAGQLLQTKIRKITEKDEGLRKIR-----E------SVEERQQESEQLQSQNQKLKNQLFHVREV 121 (401)
T ss_pred HHHHhhHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHH-----H------HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66444444443 234455666677777766665554321 0 11445677888999999999999888876
Q ss_pred hhhcc
Q 045292 185 AAKYV 189 (673)
Q Consensus 185 ~~~~~ 189 (673)
..+.-
T Consensus 122 f~k~k 126 (401)
T PF06785_consen 122 FMKTK 126 (401)
T ss_pred HHHhc
Confidence 65543
No 185
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=24.05 E-value=47 Score=30.68 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.4
Q ss_pred EeecccCChhhHhhhhcccCccchhh
Q 045292 494 TSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 494 tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
.|+.++.||+.||+|+.|...-.+|.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~~~~~~ 28 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDNLERLT 28 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcchHHhcC
Confidence 57789999999999999988888877
No 186
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=23.34 E-value=2.1e+02 Score=32.21 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 118 ERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 118 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
.+.....++.+++.+..++..+... ..+++.|..+|++|+.++..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 20 LYEKLKELEKELEFLDIQEEYIKEE---------------------QKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhC
Confidence 3444445566677777777666554 35677888888888888765
No 187
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.33 E-value=3e+02 Score=29.62 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=27.1
Q ss_pred HHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChh-HHHHHHHHhHhHHHHHHhhhhh
Q 045292 125 LKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFD-EQHLRIENARLREEIDRISGIA 185 (673)
Q Consensus 125 l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e-~~~L~~Ena~Lk~el~r~~~~~ 185 (673)
.-.....+.+||++|++++ .+ .+++......|++|.+|+..+.
T Consensus 64 ~~~~~~~l~~EN~~Lr~e~------------------~~l~~~~~~~~~~l~~EN~rLr~LL 107 (283)
T TIGR00219 64 NLKDVNNLEYENYKLRQEL------------------LKKNQQLEILTQNLKQENVRLRELL 107 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667788888888765 12 2444455555777877777643
No 188
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=23.31 E-value=57 Score=33.14 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=32.7
Q ss_pred ccChhHHHHHHHhHhcCC--CCChHHHHHHHHHhCCCccc
Q 045292 64 RHTQRQIQEMEAFFKECP--HPDDKQRKELSRELGLEPLQ 101 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~--~Ps~~~r~~LA~~LgLs~rQ 101 (673)
.+|+.|++.|...|+..- +|-.....+||+++|+++.-
T Consensus 155 ~LTdrQ~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISkst 194 (215)
T COG3413 155 DLTDRQLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKST 194 (215)
T ss_pred cCCHHHHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHHH
Confidence 699999999999999875 47777778999999999864
No 189
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=23.20 E-value=2.5e+02 Score=32.16 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=11.5
Q ss_pred hHHHHHHHHhHhHHHHHHhh
Q 045292 163 DEQHLRIENARLREEIDRIS 182 (673)
Q Consensus 163 e~~~L~~Ena~Lk~el~r~~ 182 (673)
+.++++.|.+.|+.+|.++.
T Consensus 303 e~e~~rkelE~lR~~L~kAE 322 (575)
T KOG4403|consen 303 ENETSRKELEQLRVALEKAE 322 (575)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666543
No 190
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.83 E-value=55 Score=29.91 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=25.4
Q ss_pred EEeecccCChhhHhhhhcccCccchhhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWDI 520 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 520 (673)
..++.++.||++||+.+.|..+..+|-.
T Consensus 4 ~~~i~i~a~~e~Vw~~~td~~~~~~W~~ 31 (145)
T cd08898 4 ERTILIDAPRERVWRALTDPEHFGQWFG 31 (145)
T ss_pred EEEEEecCCHHHHHHHhcChhhhhhccc
Confidence 4678899999999999999999999973
No 191
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.64 E-value=5.1e+02 Score=31.60 Aligned_cols=7 Identities=29% Similarity=0.548 Sum_probs=2.8
Q ss_pred cCCCccC
Q 045292 309 PSPLVPT 315 (673)
Q Consensus 309 ~SpLvp~ 315 (673)
++|..|.
T Consensus 668 ~~~~~~~ 674 (697)
T PF09726_consen 668 ITPPTPH 674 (697)
T ss_pred CCCCCcc
Confidence 3444443
No 192
>PRK03975 tfx putative transcriptional regulator; Provisional
Probab=22.23 E-value=67 Score=31.20 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=34.8
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
..+|+.|...|+..+ +. ....++|+.+|++...|+.|-++.+.+.|+
T Consensus 5 ~~Lt~rqreVL~lr~-~G-----lTq~EIAe~LGiS~~tVs~ie~ra~kkLr~ 51 (141)
T PRK03975 5 SFLTERQIEVLRLRE-RG-----LTQQEIADILGTSRANVSSIEKRARENIEK 51 (141)
T ss_pred cCCCHHHHHHHHHHH-cC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 468999999998843 22 345689999999999999887654444443
No 193
>PF12824 MRP-L20: Mitochondrial ribosomal protein subunit L20; InterPro: IPR024388 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents the essential mitochondrial ribosomal protein L20 family from fungi [].
Probab=22.05 E-value=1.8e+02 Score=28.92 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=36.4
Q ss_pred ccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeeccc
Q 045292 62 YHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 108 (673)
Q Consensus 62 RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQN 108 (673)
...+|+++++++.+.-.++ |..-.+..||+++|+++.-|.+=.+-
T Consensus 83 ~y~Lt~e~i~Eir~LR~~D--P~~wTr~~LAkkF~~S~~fV~~v~~~ 127 (164)
T PF12824_consen 83 KYHLTPEDIQEIRRLRAED--PEKWTRKKLAKKFNCSPLFVSMVAPA 127 (164)
T ss_pred cccCCHHHHHHHHHHHHcC--chHhhHHHHHHHhCCCHHHHHHhcCC
Confidence 3579999999999888777 56677889999999998776665543
No 194
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=21.97 E-value=84 Score=20.54 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=24.9
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEee
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFW 105 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvW 105 (673)
.++.++...+...|.... ...++++.+|++...|..|
T Consensus 5 ~~~~~~~~~i~~~~~~~~-----s~~~ia~~~~is~~tv~~~ 41 (42)
T cd00569 5 KLTPEQIEEARRLLAAGE-----SVAEIARRLGVSRSTLYRY 41 (42)
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCCCHHHHHHh
Confidence 356666666666665332 4567899999988777655
No 195
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.97 E-value=86 Score=27.49 Aligned_cols=15 Identities=53% Similarity=0.897 Sum_probs=8.1
Q ss_pred HHHHHhHhHHHHHHh
Q 045292 167 LRIENARLREEIDRI 181 (673)
Q Consensus 167 L~~Ena~Lk~el~r~ 181 (673)
|..||++||+||+++
T Consensus 5 i~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 5 IQEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555543
No 196
>cd04765 HTH_MlrA-like_sg2 Helix-Turn-Helix DNA binding domain of putative MlrA-like transcription regulators. Putative helix-turn-helix (HTH) MlrA-like transcription regulators (subgroup 2), N-terminal domain. The MlrA protein, also known as YehV, has been shown to control cell-cell aggregation by co-regulating the expression of curli and extracellular matrix production in Escherichia coli and Salmonella typhimurium. These proteins belong to the MerR superfamily of transcription regulators that promote expression of several stress regulon genes by reconfiguring the spacer between the -35 and -10 promoter elements. Their conserved N-terminal domains contain predicted HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.93 E-value=1.2e+02 Score=27.31 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=35.6
Q ss_pred cccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhH-HHHHHHHHHHHHHHHHhHHHHHHhHHH
Q 045292 61 RYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ-MKAQHERHENQILKAENQKLRAENNRY 139 (673)
Q Consensus 61 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK-~Kr~~~r~e~~~l~~en~~L~~en~~l 139 (673)
.+..||.+++..|... ..|.+..|++-.+|+-+..+.... +.+. .+......+++|...|
T Consensus 35 g~R~Yt~~di~~l~~I------------~~llr~~G~~l~~i~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~l 95 (99)
T cd04765 35 GRRYYRPKDVELLLLI------------KHLLYEKGYTIEGAKQALKEDGAAAIREE-------EAEERLPSIRAELLDL 95 (99)
T ss_pred CCeeeCHHHHHHHHHH------------HHHHHHCCCCHHHHHHHHHhccccccchh-------hHHHHHHHHHHHHHHH
Confidence 3447999999888433 234556666666666665543332 2222 3444555566666665
Q ss_pred HHh
Q 045292 140 KEA 142 (673)
Q Consensus 140 ~e~ 142 (673)
++.
T Consensus 96 ~~~ 98 (99)
T cd04765 96 RDQ 98 (99)
T ss_pred Hhc
Confidence 543
No 197
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=21.87 E-value=1.2e+02 Score=25.48 Aligned_cols=53 Identities=15% Similarity=0.398 Sum_probs=35.6
Q ss_pred HHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 123 QILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 123 ~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
..++.....|++|...+..+.+..+-..|. ..+.++++...-.||+++.++..
T Consensus 7 aeirl~~arLrqeH~D~DaaInAmi~~~cD--------~L~iqRmKkKKLAlKDki~~lED 59 (67)
T COG5481 7 AEIRLTLARLRQEHADFDAAINAMIATGCD--------ALRIQRMKKKKLALKDKITKLED 59 (67)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhCCc--------HHHHHHHHHHHHhHHHHHHHHHH
Confidence 335555666666666666666555555564 24677888888888999888765
No 198
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=21.40 E-value=5.8e+02 Score=24.71 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=15.7
Q ss_pred HHHHHHHhHhHHHHHHhhhhhh
Q 045292 165 QHLRIENARLREEIDRISGIAA 186 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~r~~~~~~ 186 (673)
.+++.|...++..++++...+-
T Consensus 98 s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 98 SRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 3466777888888888876443
No 199
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.18 E-value=1.2e+02 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhh
Q 045292 118 ERHENQILKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 118 ~r~e~~~l~~en~~L~~en~~l~e~~ 143 (673)
.+.+..-|+.-.+.|.+||.+|+.++
T Consensus 3 TEvdCe~LKrcce~LteeNrRL~ke~ 28 (44)
T smart00340 3 TEVDCELLKRCCESLTEENRRLQKEV 28 (44)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777888888877766543
No 200
>PRK00118 putative DNA-binding protein; Validated
Probab=21.16 E-value=1.9e+02 Score=26.68 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=34.6
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
.+++.|...+...|... ....++|+.+|+++..|+.|...-|.+.|+.
T Consensus 17 ~L~ekqRevl~L~y~eg-----~S~~EIAe~lGIS~~TV~r~L~RArkkLr~~ 64 (104)
T PRK00118 17 LLTEKQRNYMELYYLDD-----YSLGEIAEEFNVSRQAVYDNIKRTEKLLEDY 64 (104)
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 35677777776666654 3456799999999999998887655555543
No 201
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.97 E-value=3.6e+02 Score=23.23 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHH
Q 045292 119 RHENQILKAENQKLRAENNRYKE 141 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e 141 (673)
+.++..|+.+|..|..+|..|++
T Consensus 24 q~e~eeLke~n~~L~~e~~~L~~ 46 (72)
T PF06005_consen 24 QMENEELKEKNNELKEENEELKE 46 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444444443
No 202
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=20.90 E-value=1.4e+02 Score=29.08 Aligned_cols=56 Identities=27% Similarity=0.471 Sum_probs=29.6
Q ss_pred eEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCC
Q 045292 282 MTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNL 342 (673)
Q Consensus 282 ~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~ 342 (673)
..+++++....+..+|.--.+.+++..... .|. -+-|--...+|.|-|.||.++++
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~V~t~i~~~~g-~~i----~v~y~l~~~~g~Wki~Dv~ieGv 140 (170)
T PF05494_consen 85 QSVEVLSEPPNGRKGGNRAIVRTEIISKDG-QPI----PVDYRLRKKDGKWKIYDVIIEGV 140 (170)
T ss_dssp -EEEE------S-TT-SEEEEEEEEEET-T-EEE----EEEEEEEEETTEEEEEEEEETTE
T ss_pred CeEEEEeccCCCCCCCCEEEEEEEEEcCCC-CcE----EEEEEEEEcCCCeEEEEEEEcce
Confidence 456777655555434445566666666654 333 33343333789999999999975
No 203
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=20.69 E-value=3.2e+02 Score=23.29 Aligned_cols=22 Identities=41% Similarity=0.520 Sum_probs=10.2
Q ss_pred HHHHHhHhHHHHHHhhhhhhhcc
Q 045292 167 LRIENARLREEIDRISGIAAKYV 189 (673)
Q Consensus 167 L~~Ena~Lk~el~r~~~~~~~~~ 189 (673)
|+.|...|.+ .+|+..+|.+.+
T Consensus 50 L~~ei~~l~~-~~rIe~~Ar~~l 71 (85)
T TIGR02209 50 LQLEVAELSR-HERIEKIAKKQL 71 (85)
T ss_pred HHHHHHHHcC-HHHHHHHHHHhc
Confidence 3333344433 344555566554
No 204
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.68 E-value=3.5e+02 Score=27.03 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=9.3
Q ss_pred HHHHHHHhHhHHHHHHhh
Q 045292 165 QHLRIENARLREEIDRIS 182 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~r~~ 182 (673)
+.|..++..+++++.-+-
T Consensus 128 ~~L~~~~~~~~eDY~~L~ 145 (161)
T TIGR02894 128 EKLRQRLSTIEEDYQTLI 145 (161)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555443
No 205
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=20.47 E-value=5.5e+02 Score=22.72 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.4
Q ss_pred hhHHHHHHHHhHhHHHHHHhhh
Q 045292 162 FDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 162 ~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
.+..+|..||..|++=+.-+..
T Consensus 44 ~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 44 EENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888776654
No 206
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=20.41 E-value=61 Score=30.31 Aligned_cols=36 Identities=31% Similarity=0.606 Sum_probs=28.8
Q ss_pred EeecccCChhhHhhhhcccCccchhhhhcCCCccceeeecc
Q 045292 494 TSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIA 534 (673)
Q Consensus 494 tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 534 (673)
+++-++.||+.||+.+.|..+-.+|.- .+.++-.+.
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~~~~w~~-----~v~~~~~~~ 40 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAESWPDWWP-----GVERVVELE 40 (146)
T ss_pred EEEEecCCHHHHHHHHhChhhcchhhh-----ceEEEEEcc
Confidence 577789999999999999999999994 344444444
No 207
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=20.37 E-value=2.1e+02 Score=25.76 Aligned_cols=103 Identities=11% Similarity=0.176 Sum_probs=50.4
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCCC
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRPS 345 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~~ 345 (673)
|.+.|.+-+|++.. +++++. |...+ +....+ .|+ ..|.-...+|+..-++..+++.-..-. +.
T Consensus 22 D~~~~~~w~p~~~~----~~~~~~-------~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 84 (144)
T cd05018 22 DPEVLARCIPGCES----LEKIGP-------NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPPESYTITGEGKG---GA 84 (144)
T ss_pred CHHHHHhhccchhh----ccccCC-------CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCCcEEEEEEEEcC---CC
Confidence 88889998988764 455541 11111 111111 222 223222355554344455544422111 11
Q ss_pred CCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccchhhh
Q 045292 346 PTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLV 390 (673)
Q Consensus 346 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~ 390 (673)
.+ ...=--+-+.+. +|+|+|+|.-+++... .+..+..+++
T Consensus 85 ~~---~~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 85 GF---VKGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred ce---EEEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 11 111122446777 6679999999999653 3444444444
No 208
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=20.33 E-value=1.5e+02 Score=35.53 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=25.4
Q ss_pred ccChhHHHHHHHhHhcCCC---CChHHHHHHHHHhCCCc
Q 045292 64 RHTQRQIQEMEAFFKECPH---PDDKQRKELSRELGLEP 99 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~---Ps~~~r~~LA~~LgLs~ 99 (673)
+.-.+....++..|.+..+ |..-....||.+++=..
T Consensus 196 ~~~~~~~~~i~~yY~~gs~~g~ssa~~~y~La~~l~r~~ 234 (622)
T PF02724_consen 196 REREEYREEIEKYYSQGSYYGKSSAVLMYELASSLGRDD 234 (622)
T ss_pred HHHHHHHHHHHHHHhcCceecccHHHHHHHHHHHhCCCc
Confidence 3345556678888877653 77778889999987443
No 209
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=20.24 E-value=54 Score=29.52 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=22.8
Q ss_pred eecccCChhhHhhhhcccCccchhh
Q 045292 495 SFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 495 S~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
+.-++.||++||+.|-|..+..+|.
T Consensus 5 ~~~i~ap~e~Vw~~~td~~~~~~W~ 29 (136)
T cd08893 5 VTYIRATPEKVWQALTDPEFTRQYW 29 (136)
T ss_pred EEEecCCHHHHHHHHcCchhhhhee
Confidence 5567999999999999999999995
No 210
>PHA03155 hypothetical protein; Provisional
Probab=20.11 E-value=44 Score=31.33 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.7
Q ss_pred CCCChhHHHHHHHHhHhHHHHHH
Q 045292 158 GEMSFDEQHLRIENARLREEIDR 180 (673)
Q Consensus 158 ~~~~~e~~~L~~Ena~Lk~el~r 180 (673)
+++..+.++|+.||..||+.+.+
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 67788899999999999998764
Done!