Query 045292
Match_columns 673
No_of_seqs 366 out of 1879
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 20:49:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.7 1.9E-17 6.5E-22 141.4 4.2 63 54-116 13-75 (80)
2 2da3_A Alpha-fetoprotein enhan 99.7 1.7E-17 6E-22 141.1 3.4 63 55-117 14-76 (80)
3 2r55_A STAR-related lipid tran 99.7 2.1E-15 7.3E-20 151.1 18.7 157 238-412 20-229 (231)
4 3a01_A Homeodomain-containing 99.7 2.2E-17 7.4E-22 145.3 3.3 76 54-129 13-88 (93)
5 1nk2_P Homeobox protein VND; h 99.6 8.1E-17 2.8E-21 136.6 5.4 65 55-119 6-70 (77)
6 1wh5_A ZF-HD homeobox family p 99.6 2.6E-17 9E-22 141.0 2.3 61 55-115 14-78 (80)
7 2cue_A Paired box protein PAX6 99.6 1.1E-16 3.9E-21 136.6 5.8 64 56-119 5-68 (80)
8 2kt0_A Nanog, homeobox protein 99.6 8.1E-17 2.8E-21 138.5 4.0 65 53-117 17-81 (84)
9 2dmq_A LIM/homeobox protein LH 99.6 6.9E-17 2.3E-21 137.7 3.0 63 56-118 5-67 (80)
10 1fjl_A Paired protein; DNA-bin 99.6 1.1E-16 3.7E-21 137.0 4.2 63 55-117 15-77 (81)
11 2h1k_A IPF-1, pancreatic and d 99.6 8.5E-17 2.9E-21 131.3 3.1 59 58-116 3-61 (63)
12 1puf_A HOX-1.7, homeobox prote 99.6 2.6E-16 8.8E-21 133.5 6.0 65 55-119 10-74 (77)
13 1wh7_A ZF-HD homeobox family p 99.6 6.9E-17 2.4E-21 138.5 2.2 60 55-115 14-78 (80)
14 2dmu_A Homeobox protein goosec 99.6 1.8E-16 6.1E-21 131.9 4.3 61 57-117 6-66 (70)
15 2vi6_A Homeobox protein nanog; 99.6 4.2E-17 1.4E-21 132.6 0.3 60 57-116 2-61 (62)
16 2dms_A Homeobox protein OTX2; 99.6 1.5E-16 5.2E-21 135.8 3.8 62 56-117 5-66 (80)
17 2hdd_A Protein (engrailed home 99.6 1E-16 3.5E-21 129.9 2.6 58 58-115 3-60 (61)
18 2e1o_A Homeobox protein PRH; D 99.6 2.1E-16 7.3E-21 131.5 4.3 61 57-117 6-66 (70)
19 2cra_A Homeobox protein HOX-B1 99.6 9.7E-17 3.3E-21 133.6 2.1 62 56-117 5-66 (70)
20 1ig7_A Homeotic protein MSX-1; 99.6 1.8E-16 6.3E-21 126.9 3.5 57 59-115 1-57 (58)
21 1zq3_P PRD-4, homeotic bicoid 99.6 2.4E-16 8.4E-21 130.5 3.9 62 58-119 2-63 (68)
22 2da1_A Alpha-fetoprotein enhan 99.6 1.9E-16 6.5E-21 131.6 3.2 62 56-117 5-66 (70)
23 1ahd_P Antennapedia protein mu 99.6 1.8E-16 6.1E-21 131.5 3.0 60 58-117 2-61 (68)
24 1yz8_P Pituitary homeobox 2; D 99.6 1.3E-16 4.5E-21 132.0 2.2 62 57-118 2-63 (68)
25 2da2_A Alpha-fetoprotein enhan 99.6 1.7E-16 5.7E-21 132.0 2.8 61 56-116 5-65 (70)
26 2l7z_A Homeobox protein HOX-A1 99.6 2.9E-16 1E-20 131.9 3.4 62 56-117 5-66 (73)
27 1jgg_A Segmentation protein EV 99.6 2.6E-16 8.9E-21 127.1 2.7 58 59-116 2-59 (60)
28 2djn_A Homeobox protein DLX-5; 99.6 1.7E-16 6E-21 132.0 1.7 61 56-116 5-65 (70)
29 1ftt_A TTF-1 HD, thyroid trans 99.6 3.2E-16 1.1E-20 129.8 3.1 60 58-117 2-61 (68)
30 2da4_A Hypothetical protein DK 99.6 2.4E-16 8.4E-21 134.5 2.4 61 56-116 6-70 (80)
31 1b8i_A Ultrabithorax, protein 99.6 2.7E-16 9.2E-21 134.8 1.9 62 56-117 18-79 (81)
32 1bw5_A ISL-1HD, insulin gene e 99.6 2.4E-16 8.2E-21 129.7 1.4 60 57-116 2-61 (66)
33 3rkq_A Homeobox protein NKX-2. 99.6 4.2E-16 1.4E-20 124.4 2.7 57 58-114 2-58 (58)
34 2r5y_A Homeotic protein sex co 99.6 3.1E-16 1.1E-20 136.2 1.8 61 56-116 26-86 (88)
35 2m0c_A Homeobox protein arista 99.6 6.5E-16 2.2E-20 129.7 3.3 63 55-117 6-68 (75)
36 1akh_A Protein (mating-type pr 99.6 3.7E-16 1.3E-20 126.4 1.7 59 56-114 3-61 (61)
37 1uhs_A HOP, homeodomain only p 99.6 8.5E-16 2.9E-20 128.6 3.8 59 59-117 2-61 (72)
38 3a03_A T-cell leukemia homeobo 99.6 7E-16 2.4E-20 123.0 3.0 54 63-116 2-55 (56)
39 2hi3_A Homeodomain-only protei 99.6 9.5E-16 3.2E-20 128.7 3.9 59 59-117 3-62 (73)
40 1b72_A Protein (homeobox prote 99.6 8.2E-16 2.8E-20 136.0 3.6 62 56-117 32-93 (97)
41 3a02_A Homeobox protein arista 99.6 4.9E-16 1.7E-20 125.5 1.9 57 61-117 2-58 (60)
42 2k40_A Homeobox expressed in E 99.6 8.9E-16 3E-20 126.6 2.9 59 59-117 2-60 (67)
43 2da5_A Zinc fingers and homeob 99.6 1.2E-15 4.1E-20 128.9 3.5 57 61-117 10-66 (75)
44 3nar_A ZHX1, zinc fingers and 99.6 9E-16 3.1E-20 135.6 2.6 65 56-120 23-87 (96)
45 2cuf_A FLJ21616 protein; homeo 99.5 1.8E-15 6.2E-20 133.3 4.1 63 56-118 5-82 (95)
46 2ecc_A Homeobox and leucine zi 99.5 1.2E-15 4E-20 129.5 2.6 57 61-117 6-62 (76)
47 1x2n_A Homeobox protein pknox1 99.5 3.5E-15 1.2E-19 125.1 4.4 62 56-117 5-69 (73)
48 2ly9_A Zinc fingers and homeob 99.5 2.1E-15 7E-20 126.7 2.2 60 58-117 6-65 (74)
49 2dn0_A Zinc fingers and homeob 99.5 2.4E-15 8.2E-20 127.2 1.9 59 59-117 9-67 (76)
50 1puf_B PRE-B-cell leukemia tra 99.5 6.3E-15 2.1E-19 123.5 3.6 60 59-118 2-64 (73)
51 1au7_A Protein PIT-1, GHF-1; c 99.5 2.2E-15 7.6E-20 142.8 0.9 62 55-116 84-145 (146)
52 1b72_B Protein (PBX1); homeodo 99.5 4.7E-15 1.6E-19 128.3 2.7 60 59-118 2-64 (87)
53 2dmp_A Zinc fingers and homeob 99.5 9.4E-15 3.2E-19 127.5 4.7 57 61-117 16-72 (89)
54 1k61_A Mating-type protein alp 99.5 5.2E-15 1.8E-19 119.3 2.5 55 61-115 1-58 (60)
55 2ecb_A Zinc fingers and homeob 99.5 7.5E-15 2.6E-19 128.3 3.7 54 64-117 17-70 (89)
56 2cqx_A LAG1 longevity assuranc 99.5 2.7E-15 9.4E-20 126.0 0.7 58 59-116 9-67 (72)
57 2dmn_A Homeobox protein TGIF2L 99.5 1.1E-14 3.6E-19 125.5 4.3 62 56-117 5-69 (83)
58 2da6_A Hepatocyte nuclear fact 99.5 1.4E-14 4.9E-19 129.2 5.2 64 55-118 3-87 (102)
59 1du6_A PBX1, homeobox protein 99.5 2.8E-15 9.7E-20 122.4 0.6 58 58-115 3-63 (64)
60 1e3o_C Octamer-binding transcr 99.5 4.3E-15 1.5E-19 142.8 0.9 62 55-116 98-159 (160)
61 1mnm_C Protein (MAT alpha-2 tr 99.5 1E-14 3.4E-19 126.4 3.0 59 56-114 25-86 (87)
62 1le8_B Mating-type protein alp 99.5 1E-14 3.5E-19 125.5 2.2 59 59-117 3-64 (83)
63 2xsd_C POU domain, class 3, tr 99.5 7.5E-15 2.6E-19 141.8 1.5 65 54-118 95-159 (164)
64 1wi3_A DNA-binding protein SAT 99.5 1.8E-14 6.1E-19 118.9 3.3 59 55-113 4-63 (71)
65 3d1n_I POU domain, class 6, tr 99.5 1.4E-14 4.7E-19 137.9 3.0 60 56-115 91-150 (151)
66 3nau_A Zinc fingers and homeob 99.5 1.6E-14 5.4E-19 119.1 2.7 53 65-117 11-63 (66)
67 1lfb_A Liver transcription fac 99.4 7E-15 2.4E-19 130.9 -0.6 64 55-118 6-90 (99)
68 2l9r_A Homeobox protein NKX-3. 99.4 1.1E-14 3.7E-19 121.5 0.0 55 63-117 9-63 (69)
69 1x2m_A LAG1 longevity assuranc 99.4 1.4E-14 4.9E-19 119.0 0.2 49 67-115 9-58 (64)
70 3l1p_A POU domain, class 5, tr 99.4 3.7E-14 1.3E-18 135.6 3.1 61 56-116 94-154 (155)
71 2e19_A Transcription factor 8; 99.4 3.3E-14 1.1E-18 116.8 0.6 52 64-115 9-60 (64)
72 2d5v_A Hepatocyte nuclear fact 99.4 5.2E-14 1.8E-18 135.5 0.5 63 55-117 94-156 (164)
73 3k2a_A Homeobox protein MEIS2; 99.3 1.4E-13 4.7E-18 113.9 1.2 58 64-121 4-64 (67)
74 1ic8_A Hepatocyte nuclear fact 99.2 8.2E-13 2.8E-17 130.7 -0.8 63 53-115 110-193 (194)
75 2lk2_A Homeobox protein TGIF1; 99.1 1.9E-11 6.6E-16 106.5 3.1 58 63-120 10-70 (89)
76 2h8r_A Hepatocyte nuclear fact 99.1 2.5E-11 8.5E-16 121.8 1.6 62 52-113 136-218 (221)
77 2da7_A Zinc finger homeobox pr 99.0 4.2E-11 1.4E-15 99.5 1.9 46 67-112 14-59 (71)
78 1em2_A MLN64 protein; beta bar 99.0 4E-09 1.4E-13 105.5 16.0 161 240-412 21-226 (229)
79 2pso_A STAR-related lipid tran 99.0 2.1E-09 7.1E-14 109.0 11.1 105 300-410 119-226 (237)
80 3p0l_A Steroidogenic acute reg 98.9 7.9E-09 2.7E-13 102.9 13.7 158 242-410 12-213 (221)
81 1mh3_A Maltose binding-A1 home 98.9 8E-11 2.8E-15 125.9 -0.8 57 58-114 365-421 (421)
82 1jss_A Stard4, cholesterol-reg 98.6 2.8E-07 9.6E-12 92.0 14.1 106 300-410 113-222 (224)
83 1ln1_A PC-TP, phosphatidylchol 98.6 5.2E-07 1.8E-11 88.5 13.0 107 300-411 97-209 (214)
84 2nzz_A Penetratin conjugated G 98.4 1.3E-08 4.4E-13 74.7 -2.9 20 100-119 1-20 (37)
85 3fo5_A Thioesterase, adipose a 98.4 1.7E-06 5.7E-11 89.1 11.2 84 300-386 133-223 (258)
86 3qsz_A STAR-related lipid tran 98.1 2.4E-05 8.3E-10 75.3 12.0 106 300-411 72-179 (189)
87 2e3n_A Lipid-transfer protein 97.8 9.9E-05 3.4E-09 74.7 11.3 108 300-412 120-247 (255)
88 2r55_A STAR-related lipid tran 96.8 0.015 5.1E-07 57.6 13.5 198 432-666 19-227 (231)
89 1jss_A Stard4, cholesterol-reg 96.4 0.0088 3E-07 59.3 8.7 175 457-666 42-222 (224)
90 3qsz_A STAR-related lipid tran 96.3 0.034 1.2E-06 53.0 12.2 172 458-666 3-178 (189)
91 3p0l_A Steroidogenic acute reg 95.5 0.22 7.4E-06 48.9 14.4 194 434-666 9-213 (221)
92 2pso_A STAR-related lipid tran 95.4 0.14 4.9E-06 51.3 12.8 176 456-668 48-228 (237)
93 1em2_A MLN64 protein; beta bar 95.3 0.14 4.7E-06 50.5 12.1 196 435-666 21-224 (229)
94 1ln1_A PC-TP, phosphatidylchol 95.1 0.12 4.1E-06 50.1 10.9 174 456-666 26-208 (214)
95 3fo5_A Thioesterase, adipose a 94.2 0.84 2.9E-05 46.6 14.9 182 398-608 10-202 (258)
96 2ys9_A Homeobox and leucine zi 85.6 0.26 8.9E-06 40.9 1.3 42 67-108 15-56 (70)
97 2d4r_A Hypothetical protein TT 83.8 1.7 5.9E-05 37.7 6.0 55 357-412 91-145 (147)
98 2jn6_A Protein CGL2762, transp 82.3 0.14 4.6E-06 43.9 -1.8 42 63-107 4-45 (97)
99 1ci6_A Transcription factor AT 80.3 4.8 0.00016 32.4 6.9 40 119-179 22-61 (63)
100 1hjb_A Ccaat/enhancer binding 79.9 4.1 0.00014 35.1 6.7 30 110-142 29-58 (87)
101 3tfz_A Cyclase; helix-GRIP, BE 79.1 28 0.00094 32.3 12.9 128 266-415 26-163 (172)
102 1t2k_D Cyclic-AMP-dependent tr 77.3 6.7 0.00023 31.2 6.8 39 119-178 21-59 (61)
103 2jee_A YIIU; FTSZ, septum, coi 76.8 2.5 8.7E-05 36.0 4.3 24 164-187 50-77 (81)
104 3tvq_A Multifunctional cyclase 75.2 36 0.0012 32.0 12.6 61 353-416 91-151 (169)
105 3tl1_A WHIE ORF VI, polyketide 72.8 33 0.0011 31.9 11.5 124 266-414 24-149 (159)
106 2e3n_A Lipid-transfer protein 71.8 2.8 9.5E-05 41.8 4.0 173 437-635 28-217 (255)
107 1jnm_A Proto-oncogene C-JUN; B 69.5 7.3 0.00025 31.1 5.2 39 119-178 21-59 (62)
108 2wt7_B Transcription factor MA 68.6 10 0.00034 32.9 6.2 67 96-183 17-83 (90)
109 1gu4_A CAAT/enhancer binding p 68.2 9.8 0.00033 32.1 5.9 17 124-140 40-56 (78)
110 2j5u_A MREC protein; bacterial 66.9 2.1 7.3E-05 43.5 2.0 17 163-179 44-60 (255)
111 1t17_A Conserved hypothetical 66.7 22 0.00075 31.7 8.6 123 266-412 23-145 (148)
112 2wt7_A Proto-oncogene protein 65.7 18 0.00063 28.8 6.9 24 119-142 22-45 (63)
113 3m91_A Proteasome-associated A 57.5 30 0.001 26.9 6.4 38 124-182 13-50 (51)
114 3s9g_A Protein hexim1; cyclin 57.3 11 0.00039 33.0 4.5 55 118-179 35-89 (104)
115 1l8d_A DNA double-strand break 55.1 10 0.00035 33.2 4.0 11 145-155 47-57 (112)
116 1gd2_E Transcription factor PA 53.5 27 0.00093 28.8 6.0 17 122-138 31-47 (70)
117 2qpv_A Uncharacterized protein 50.4 8.3 0.00029 36.1 2.8 31 490-520 27-57 (156)
118 3ra3_B P2F; coiled coil domain 43.7 13 0.00045 24.6 2.0 17 165-181 3-19 (28)
119 1hlv_A CENP-B, major centromer 42.3 12 0.00042 32.9 2.4 48 61-111 4-51 (131)
120 3a5t_A Transcription factor MA 42.1 3.1 0.00011 37.2 -1.5 67 96-183 27-93 (107)
121 2dgc_A Protein (GCN4); basic d 41.3 42 0.0014 26.9 5.2 17 166-182 41-57 (63)
122 2glo_A Brinker CG9653-PA; prot 41.2 11 0.00037 29.0 1.7 44 63-107 4-47 (59)
123 3p9v_A Uncharacterized protein 40.2 2.1E+02 0.0072 25.9 12.3 118 266-405 28-145 (161)
124 2d4r_A Hypothetical protein TT 39.6 9.9 0.00034 32.7 1.4 28 492-519 4-31 (147)
125 2yy0_A C-MYC-binding protein; 39.2 39 0.0013 26.3 4.5 19 162-180 19-37 (53)
126 1uii_A Geminin; human, DNA rep 39.1 62 0.0021 27.6 6.1 22 165-186 56-77 (83)
127 1gd2_E Transcription factor PA 37.2 61 0.0021 26.7 5.6 16 124-139 40-55 (70)
128 3m9b_A Proteasome-associated A 37.0 36 0.0012 34.7 5.1 19 165-183 78-96 (251)
129 2elh_A CG11849-PA, LD40883P; s 36.4 13 0.00044 31.0 1.5 43 59-106 17-59 (87)
130 1hjb_A Ccaat/enhancer binding 35.9 62 0.0021 27.7 5.7 25 162-186 50-74 (87)
131 1t6f_A Geminin; coiled-coil, c 35.8 44 0.0015 24.1 3.8 11 165-175 24-34 (37)
132 2ns9_A Hypothetical protein AP 34.5 13 0.00043 33.2 1.2 29 491-519 14-42 (157)
133 1t17_A Conserved hypothetical 34.3 19 0.00063 32.2 2.3 28 493-520 5-32 (148)
134 2pcs_A Conserved protein; stru 34.2 11 0.00038 34.1 0.8 28 492-519 5-32 (162)
135 1deb_A APC protein, adenomatou 34.1 30 0.001 26.8 3.0 26 163-188 11-36 (54)
136 3ggn_A Uncharacterized protein 33.6 17 0.00058 33.1 2.0 29 491-519 5-33 (155)
137 2leq_A Uncharacterized protein 32.0 23 0.00078 30.8 2.5 28 491-518 6-33 (146)
138 3q6a_A Uncharacterized protein 31.7 24 0.00083 31.0 2.6 27 493-519 4-30 (135)
139 1go4_E MAD1 (mitotic arrest de 30.4 1.3E+02 0.0044 26.4 6.9 69 119-187 18-93 (100)
140 1gu4_A CAAT/enhancer binding p 30.3 86 0.0029 26.3 5.6 20 164-183 52-71 (78)
141 1wlq_A Geminin; coiled-coil; 2 29.4 1.1E+02 0.0037 26.1 6.0 14 165-178 55-68 (83)
142 1jko_C HIN recombinase, DNA-in 28.7 16 0.00054 26.2 0.7 42 64-110 5-46 (52)
143 3he5_B Synzip2; heterodimeric 28.2 1.7E+02 0.0059 21.8 6.2 22 163-184 25-46 (52)
144 3m48_A General control protein 27.9 51 0.0018 23.4 3.1 24 163-186 8-31 (33)
145 1x53_A Activator of 90 kDa hea 27.4 25 0.00086 31.3 2.0 28 492-519 13-40 (145)
146 3iv1_A Tumor susceptibility ge 26.4 1.1E+02 0.0039 25.7 5.6 36 108-143 13-48 (78)
147 3tfz_A Cyclase; helix-GRIP, BE 26.1 30 0.001 32.1 2.2 29 491-519 6-34 (172)
148 3hug_A RNA polymerase sigma fa 25.7 33 0.0011 28.5 2.3 47 64-115 37-83 (92)
149 1wlq_A Geminin; coiled-coil; 2 25.2 2.9E+02 0.01 23.4 7.9 22 165-186 48-69 (83)
150 2rgt_A Fusion of LIM/homeobox 25.1 3.2 0.00011 39.0 -4.7 31 56-86 134-164 (169)
151 2dfs_A Myosin-5A; myosin-V, in 24.7 41 0.0014 41.0 3.6 61 113-183 984-1044(1080)
152 2le1_A Uncharacterized protein 24.0 41 0.0014 30.0 2.7 28 492-519 4-31 (151)
153 3hnw_A Uncharacterized protein 23.8 1.2E+02 0.0042 27.8 5.9 20 163-182 111-130 (138)
154 1tc3_C Protein (TC3 transposas 23.8 32 0.0011 24.0 1.6 40 64-108 5-44 (51)
155 2zxx_A Geminin; coiled-coil, c 23.7 2.3E+02 0.0079 23.8 7.0 20 165-184 51-70 (79)
156 1xn6_A Hypothetical protein BC 23.0 27 0.00091 30.9 1.2 27 493-519 11-37 (143)
157 3mq7_A Bone marrow stromal ant 22.7 92 0.0032 28.1 4.6 43 101-143 45-87 (121)
158 2oa5_A Hypothetical protein BQ 22.2 1.5E+02 0.005 26.6 5.7 41 122-166 10-50 (110)
159 1s7o_A Hypothetical UPF0122 pr 22.0 76 0.0026 27.9 4.0 49 63-116 21-69 (113)
160 2kew_A Uncharacterized protein 22.0 28 0.00095 31.4 1.1 28 492-519 12-39 (152)
161 1z94_A Conserved hypothetical 21.8 26 0.00088 30.7 0.8 26 494-519 7-32 (147)
162 3oja_B Anopheles plasmodium-re 21.4 1.6E+02 0.0054 32.4 7.3 21 163-183 559-579 (597)
163 1xsv_A Hypothetical UPF0122 pr 21.4 79 0.0027 27.6 4.0 50 63-117 24-73 (113)
164 2lcg_A Uncharacterized protein 20.5 28 0.00097 30.8 0.8 26 493-518 4-29 (142)
165 2wvr_A Geminin; DNA replicatio 20.1 1.6E+02 0.0055 29.0 6.1 42 123-185 104-145 (209)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-17 Score=141.44 Aligned_cols=63 Identities=30% Similarity=0.455 Sum_probs=59.2
Q ss_pred CCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 54 SQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 54 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
..+++||+|+.||.+|+..||..|+.++||+..+|.+||..|||+++||++||||||+|+|+.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 345678889999999999999999999999999999999999999999999999999999975
No 2
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.66 E-value=1.7e-17 Score=141.15 Aligned_cols=63 Identities=21% Similarity=0.351 Sum_probs=59.1
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.+++||.|+.||.+|+..||..|..++||+..++.+||.+|||+++||++||||||+|+|+++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 456678899999999999999999999999999999999999999999999999999999853
No 3
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.66 E-value=2.1e-15 Score=151.11 Aligned_cols=157 Identities=17% Similarity=0.296 Sum_probs=123.3
Q ss_pred ChHHHHHHHHHHHHHHHHhhcCCCCccc-----------------------------------------c-----hhhhh
Q 045292 238 DKPMIVELAVAAMEEFLRMAQAGDPLWT-----------------------------------------D-----QNQWS 271 (673)
Q Consensus 238 ~~~~~~~lA~~Am~El~~la~~~~plW~-----------------------------------------D-----~~~w~ 271 (673)
+++.++++|++||+||+++++. +..|. + ..+|-
T Consensus 20 ~~~~y~~~a~~~~~~~l~~~~~-~~~W~~~~~~~gv~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~r~~Wd 98 (231)
T 2r55_A 20 FQSMAAQMSEAVAEKMLQYRRD-TAGWKICREGNGVSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWD 98 (231)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC-CSSCEEEECCSSEEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHCC--CCSHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCEEEEEEccCCCCCcEEEEEEEECCCHHHHHHHHHhhCcchhhhhc
Confidence 5788999999999999999964 47897 1 12444
Q ss_pred cccccceeeeeEeEEeecccCCCCCCceeeeehhhc--ccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCC-C--CC
Q 045292 272 SVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQ--VPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR-P--SP 346 (673)
Q Consensus 272 ~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~--~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~-~--~~ 346 (673)
+.| ..+..++.++ +.-.++| ++. .++++|++|||.++||+++.++|.|+|+.+|++.-. | ..
T Consensus 99 ~~~----~~~~vle~i~--------~~~~i~~-~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~~P~~~~ 165 (231)
T 2r55_A 99 ENV----TGFEIIQSIT--------DTLCVSR-TSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLCPPKPG 165 (231)
T ss_dssp TTC----SEEEEEEECS--------SSEEEEE-EECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTTSCCCTT
T ss_pred ccc----ceeEEEEEcC--------CCEEEEE-EEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCCCCCCCC
Confidence 333 2344555553 1123344 233 445799999999999999999999999999998432 1 16
Q ss_pred CcceeecCCcceEEecC--CCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 045292 347 TSKCRRRPSGCLIQELP--NGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERL 412 (673)
Q Consensus 347 ~~~~~~~PSGclIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~l 412 (673)
++|++.++|||+|++++ +|.|+|||+.|++...+ +| +.++++.+..+...|++.|+++|+.+
T Consensus 166 ~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 166 FVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp CEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 79999999999999998 78999999999998876 55 67899999999999999999999753
No 4
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.66 E-value=2.2e-17 Score=145.25 Aligned_cols=76 Identities=29% Similarity=0.408 Sum_probs=62.2
Q ss_pred CCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHHHHHHHHHHh
Q 045292 54 SQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHENQILKAEN 129 (673)
Q Consensus 54 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en 129 (673)
..+++||+|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|++..+.+....++.+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~~~~~~~ 88 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAAN 88 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---------
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999987665555444443
No 5
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.65 E-value=8.1e-17 Score=136.56 Aligned_cols=65 Identities=34% Similarity=0.476 Sum_probs=60.2
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHER 119 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 119 (673)
.++++|.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.+..
T Consensus 6 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp SCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 45567788999999999999999999999999999999999999999999999999999986543
No 6
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=2.6e-17 Score=140.99 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=57.5
Q ss_pred CCCCcccccccChhHHHHHHHhHhc----CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKE----CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~----~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
.+++||+|+.||.+|+..||..|+. ++||+..+|.+||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567888999999999999999999 999999999999999999999999999999999874
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.1e-16 Score=136.59 Aligned_cols=64 Identities=23% Similarity=0.458 Sum_probs=59.5
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHER 119 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 119 (673)
.++||+|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 3457788999999999999999999999999999999999999999999999999999997544
No 8
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.63 E-value=8.1e-17 Score=138.49 Aligned_cols=65 Identities=29% Similarity=0.290 Sum_probs=60.2
Q ss_pred CCCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 53 PSQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 53 ~~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
...+++||.|+.||.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+++
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34566788899999999999999999999999999999999999999999999999999999853
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=6.9e-17 Score=137.69 Aligned_cols=63 Identities=24% Similarity=0.487 Sum_probs=58.9
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
.++||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 345788899999999999999999999999999999999999999999999999999999654
No 10
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.63 E-value=1.1e-16 Score=136.99 Aligned_cols=63 Identities=29% Similarity=0.580 Sum_probs=58.6
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.++++|.|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 456788899999999999999999999999999999999999999999999999999999865
No 11
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.62 E-value=8.5e-17 Score=131.28 Aligned_cols=59 Identities=29% Similarity=0.398 Sum_probs=55.6
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
+||.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 47788999999999999999999999999999999999999999999999999999985
No 12
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.62 E-value=2.6e-16 Score=133.47 Aligned_cols=65 Identities=34% Similarity=0.413 Sum_probs=60.1
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHER 119 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 119 (673)
.++.+|+|+.||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 34567788999999999999999999999999999999999999999999999999999997543
No 13
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.62 E-value=6.9e-17 Score=138.49 Aligned_cols=60 Identities=20% Similarity=0.331 Sum_probs=56.1
Q ss_pred CCCCcccccccChhHHHHHHHhHhc-----CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKE-----CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~-----~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
.+++||.|+.||.+|+..|| .|.+ ++||+..+|.+||.+|||+++||||||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678889999999999999 7999 999999999999999999999999999999999874
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.8e-16 Score=131.89 Aligned_cols=61 Identities=28% Similarity=0.553 Sum_probs=57.6
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+.||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 4577889999999999999999999999999999999999999999999999999999853
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.61 E-value=4.2e-17 Score=132.58 Aligned_cols=60 Identities=33% Similarity=0.352 Sum_probs=53.0
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
+++|.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 357788999999999999999999999999999999999999999999999999999985
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.5e-16 Score=135.76 Aligned_cols=62 Identities=27% Similarity=0.512 Sum_probs=58.6
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+++||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 45678889999999999999999999999999999999999999999999999999999854
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.61 E-value=1e-16 Score=129.85 Aligned_cols=58 Identities=31% Similarity=0.600 Sum_probs=53.2
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
+||.|+.||.+|+..||..|+.++||+..++.+||..+||+++||++||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4778899999999999999999999999999999999999999999999999999986
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=2.1e-16 Score=131.53 Aligned_cols=61 Identities=30% Similarity=0.403 Sum_probs=57.2
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+.+++|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 3466788999999999999999999999999999999999999999999999999999863
No 19
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=9.7e-17 Score=133.59 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=57.9
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
++.||+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 34577889999999999999999999999999999999999999999999999999999753
No 20
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=1.8e-16 Score=126.93 Aligned_cols=57 Identities=35% Similarity=0.481 Sum_probs=54.9
Q ss_pred cccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999987
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.60 E-value=2.4e-16 Score=130.53 Aligned_cols=62 Identities=32% Similarity=0.482 Sum_probs=58.3
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHER 119 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r 119 (673)
+||.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999999999999997543
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-16 Score=131.64 Aligned_cols=62 Identities=23% Similarity=0.429 Sum_probs=58.2
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+++||+|++||.+|+..||..|+.++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 45678889999999999999999999999999999999999999999999999999999853
No 23
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.60 E-value=1.8e-16 Score=131.46 Aligned_cols=60 Identities=28% Similarity=0.445 Sum_probs=57.3
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+||.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 477889999999999999999999999999999999999999999999999999999864
No 24
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.60 E-value=1.3e-16 Score=132.04 Aligned_cols=62 Identities=29% Similarity=0.550 Sum_probs=58.4
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
++||.|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 45778899999999999999999999999999999999999999999999999999998653
No 25
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.60 E-value=1.7e-16 Score=131.99 Aligned_cols=61 Identities=28% Similarity=0.478 Sum_probs=57.7
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
.++||+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 4567788999999999999999999999999999999999999999999999999999975
No 26
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.59 E-value=2.9e-16 Score=131.88 Aligned_cols=62 Identities=27% Similarity=0.379 Sum_probs=58.3
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.+.||+|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 45678889999999999999999999999999999999999999999999999999999853
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.59 E-value=2.6e-16 Score=127.07 Aligned_cols=58 Identities=31% Similarity=0.429 Sum_probs=55.2
Q ss_pred cccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
||.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5778999999999999999999999999999999999999999999999999999984
No 28
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-16 Score=132.05 Aligned_cols=61 Identities=33% Similarity=0.466 Sum_probs=57.4
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
.+.||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 3457788999999999999999999999999999999999999999999999999999874
No 29
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.59 E-value=3.2e-16 Score=129.84 Aligned_cols=60 Identities=40% Similarity=0.563 Sum_probs=57.4
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+||+|+.||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 577889999999999999999999999999999999999999999999999999999864
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-16 Score=134.45 Aligned_cols=61 Identities=11% Similarity=0.280 Sum_probs=57.9
Q ss_pred CCCcccccccChhHHHHHHHhHhcC----CCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKEC----PHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~----~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
+++||+|+.||.+|+..||..|+.+ +||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 4567888999999999999999999 999999999999999999999999999999999984
No 31
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.58 E-value=2.7e-16 Score=134.76 Aligned_cols=62 Identities=29% Similarity=0.443 Sum_probs=54.4
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.++||.|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 34577889999999999999999999999999999999999999999999999999999854
No 32
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.58 E-value=2.4e-16 Score=129.65 Aligned_cols=60 Identities=25% Similarity=0.516 Sum_probs=57.0
Q ss_pred CCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 57 PKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 57 kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
++||+|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|++
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 357788999999999999999999999999999999999999999999999999999875
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.58 E-value=4.2e-16 Score=124.36 Aligned_cols=57 Identities=37% Similarity=0.501 Sum_probs=54.3
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 114 (673)
+||.|+.||.+|+..||..|+.++||+..++.+||..+||+++||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 367788999999999999999999999999999999999999999999999999975
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.57 E-value=3.1e-16 Score=136.20 Aligned_cols=61 Identities=28% Similarity=0.412 Sum_probs=54.7
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
++.||+|+.||.+|+..||..|+.++||+..+|.+||..+||+++||++||||||+|+|++
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 3457788999999999999999999999999999999999999999999999999999985
No 35
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.57 E-value=6.5e-16 Score=129.75 Aligned_cols=63 Identities=29% Similarity=0.520 Sum_probs=58.7
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.++++|.|++||.+|+..||..|..++||+..++.+||..+||+++||++||||||+|+|++.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999999853
No 36
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.57 E-value=3.7e-16 Score=126.39 Aligned_cols=59 Identities=27% Similarity=0.496 Sum_probs=48.5
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 114 (673)
++++|+|++||.+|+..||..|..++||+..++.+||..+||++.||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 45677889999999999999999999999999999999999999999999999999976
No 37
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=8.5e-16 Score=128.57 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=55.4
Q ss_pred cccccccChhHHHHHHHhHhc-CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKE-CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.++|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 456789999999999999996 99999999999999999999999999999999999854
No 38
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.57 E-value=7e-16 Score=123.04 Aligned_cols=54 Identities=31% Similarity=0.481 Sum_probs=51.1
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 39
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=9.5e-16 Score=128.69 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=55.6
Q ss_pred cccccccChhHHHHHHHhHhc-CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKE-CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+++|++||.+|+..||..|+. ++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999995 99999999999999999999999999999999999854
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=8.2e-16 Score=135.98 Aligned_cols=62 Identities=31% Similarity=0.408 Sum_probs=55.5
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.+.++.|+.||.+|+..||..|..++||+..+|.+||..|||+++||++||||||+|+|++.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 45677889999999999999999999999999999999999999999999999999999864
No 41
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.56 E-value=4.9e-16 Score=125.48 Aligned_cols=57 Identities=32% Similarity=0.546 Sum_probs=50.7
Q ss_pred cccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 61 RYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 61 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 468899999999999999999999999999999999999999999999999999864
No 42
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.56 E-value=8.9e-16 Score=126.61 Aligned_cols=59 Identities=32% Similarity=0.544 Sum_probs=56.5
Q ss_pred cccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
||+|+.||++|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 67789999999999999999999999999999999999999999999999999999854
No 43
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=128.86 Aligned_cols=57 Identities=23% Similarity=0.538 Sum_probs=54.0
Q ss_pred cccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 61 RYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 61 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+|++||.+|+..||..|..++||+..++.+||.++||+++||++||||||+|+|++.
T Consensus 10 kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 10 KYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 455799999999999999999999999999999999999999999999999999864
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.55 E-value=9e-16 Score=135.55 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=57.6
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERH 120 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 120 (673)
...+|+|++||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++.+.
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcccH
Confidence 34567789999999999999999999999999999999999999999999999999999976443
No 45
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.8e-15 Score=133.29 Aligned_cols=63 Identities=25% Similarity=0.509 Sum_probs=59.2
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhC---------------CCcccEEeecccchhHHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELG---------------LEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~Lg---------------Ls~rQVkvWFQNRRaK~Kr~~~ 118 (673)
+++||.|+.||++|+..||..|+.++||+..+|.+||.+|| |++.||++||||||+|+|+++.
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999999999999 9999999999999999998654
No 46
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=1.2e-15 Score=129.50 Aligned_cols=57 Identities=23% Similarity=0.468 Sum_probs=53.6
Q ss_pred cccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 61 RYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 61 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+|.+||.+|+..||+.|..++||+..+|.+||+.+||+++||++||||||+|+|+.+
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 345699999999999999999999999999999999999999999999999999864
No 47
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=3.5e-15 Score=125.07 Aligned_cols=62 Identities=19% Similarity=0.397 Sum_probs=57.4
Q ss_pred CCCcccccccChhHHHHHHHhHhc---CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
++.|++|+.|+.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 345777889999999999999987 99999999999999999999999999999999999854
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-15 Score=126.69 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=56.6
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.++.|+.||.+|+..||..|+.++||+..++.+||.++||+++||++||||||+|+|+++
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 366788999999999999999999999999999999999999999999999999999854
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-15 Score=127.18 Aligned_cols=59 Identities=17% Similarity=0.398 Sum_probs=55.3
Q ss_pred cccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
++.|++||.+|+..||..|..++||+..++.+||+++||+++||++||||||+|+|++.
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34578899999999999999999999999999999999999999999999999999853
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.50 E-value=6.3e-15 Score=123.50 Aligned_cols=60 Identities=25% Similarity=0.538 Sum_probs=56.7
Q ss_pred cccccccChhHHHHHHHhH---hcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
||+|++||.+|+..||..| ..++||+..++.+||..+||+++||++||||||+|+|++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 6778899999999999999 99999999999999999999999999999999999998654
No 51
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.50 E-value=2.2e-15 Score=142.83 Aligned_cols=62 Identities=29% Similarity=0.454 Sum_probs=55.4
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
.+++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 45667789999999999999999999999999999999999999999999999999999974
No 52
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.50 E-value=4.7e-15 Score=128.27 Aligned_cols=60 Identities=25% Similarity=0.538 Sum_probs=56.1
Q ss_pred cccccccChhHHHHHHHhH---hcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
||+|++|+.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+|++..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 6778899999999999999 89999999999999999999999999999999999998653
No 53
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=9.4e-15 Score=127.45 Aligned_cols=57 Identities=21% Similarity=0.414 Sum_probs=52.9
Q ss_pred cccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 61 RYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 61 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
++.+||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+|++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 344599999999999999999999999999999999999999999999999998753
No 54
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.49 E-value=5.2e-15 Score=119.33 Aligned_cols=55 Identities=31% Similarity=0.555 Sum_probs=52.7
Q ss_pred cccccChhHHHHHHHhHhc---CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 61 RYHRHTQRQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 61 ~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
++++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3578999999999999999 999999999999999999999999999999999986
No 55
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=7.5e-15 Score=128.30 Aligned_cols=54 Identities=19% Similarity=0.341 Sum_probs=52.1
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+||.+|+..||+.|..++||+..+|.+||..|||+++||++||||||+|||++.
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 799999999999999999999999999999999999999999999999999853
No 56
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=2.7e-15 Score=125.98 Aligned_cols=58 Identities=26% Similarity=0.416 Sum_probs=53.5
Q ss_pred cccccccChhHHHHHHHhH-hcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFF-KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
.+++.+++.+|+..||..| ..++||+..+|.+||.++||+++||++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4455678899999999999 999999999999999999999999999999999999863
No 57
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=125.48 Aligned_cols=62 Identities=19% Similarity=0.378 Sum_probs=56.9
Q ss_pred CCCcccccccChhHHHHHHHhHhc---CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
.++||+|++|+.+|+..||..|.+ ++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 345777889999999999999988 59999999999999999999999999999999999854
No 58
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.4e-14 Score=129.19 Aligned_cols=64 Identities=16% Similarity=0.282 Sum_probs=59.2
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHh---------------------CCCcccEEeecccchhHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSREL---------------------GLEPLQVKFWFQNKRTQM 113 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~L---------------------gLs~rQVkvWFQNRRaK~ 113 (673)
.+++||.|+.|++.|+.+||+.|+.++||+..+|++||.+| +|++.+|++||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 35678889999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHH
Q 045292 114 KAQHE 118 (673)
Q Consensus 114 Kr~~~ 118 (673)
|+++.
T Consensus 83 kr~~~ 87 (102)
T 2da6_A 83 AFRQK 87 (102)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 98644
No 59
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=2.8e-15 Score=122.41 Aligned_cols=58 Identities=24% Similarity=0.481 Sum_probs=54.9
Q ss_pred CcccccccChhHHHHHHHhH---hcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFF---KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F---~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
.+++|+.|+.+|+..||..| ..++||+..++.+||.++||+++||++||||||+|+|+
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 36778899999999999999 99999999999999999999999999999999999875
No 60
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.48 E-value=4.3e-15 Score=142.80 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=54.6
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
..++||+|+.||.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 34678889999999999999999999999999999999999999999999999999999974
No 61
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.47 E-value=1e-14 Score=126.44 Aligned_cols=59 Identities=31% Similarity=0.514 Sum_probs=55.3
Q ss_pred CCCcccccccChhHHHHHHHhHhc---CCCCChHHHHHHHHHhCCCcccEEeecccchhHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 114 (673)
.+++|+|++|+.+|+..||..|.. ++||+..+|.+||.++||+++||++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 345666889999999999999999 99999999999999999999999999999999987
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.46 E-value=1e-14 Score=125.46 Aligned_cols=59 Identities=27% Similarity=0.467 Sum_probs=54.0
Q ss_pred cccccccChhHHHHHHHhHhc---CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 59 RKRYHRHTQRQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
+++|++||.+|+..||..|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 455667999999999999999 99999999999999999999999999999999999853
No 63
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.46 E-value=7.5e-15 Score=141.80 Aligned_cols=65 Identities=29% Similarity=0.468 Sum_probs=52.2
Q ss_pred CCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHH
Q 045292 54 SQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHE 118 (673)
Q Consensus 54 ~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~ 118 (673)
.++++||+|++||..|+..||+.|..++||+..+|.+||.++||+++||++||||||+|+||+..
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 34667888999999999999999999999999999999999999999999999999999998653
No 64
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=1.8e-14 Score=118.93 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=54.9
Q ss_pred CCCCcccccccChhHHHHHHHhHhc-CCCCChHHHHHHHHHhCCCcccEEeecccchhHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKE-CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQM 113 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~-~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~ 113 (673)
.+++||.|+.|+.+|+..|+..|+. ++||+...|..||.++||++++|++||||||--.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 3456888999999999999999999 9999999999999999999999999999999653
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.46 E-value=1.4e-14 Score=137.91 Aligned_cols=60 Identities=32% Similarity=0.640 Sum_probs=57.2
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
+++||+|+.||.+|+..||..|..++||+..+|.+||+++||+++||++||||||+|+||
T Consensus 91 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 91 SKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 456778899999999999999999999999999999999999999999999999999986
No 66
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=119.09 Aligned_cols=53 Identities=28% Similarity=0.463 Sum_probs=50.4
Q ss_pred cChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 65 HTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 65 fT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
-|.+|+..||..|..++||+..+|.+||..+||+++||++||||||+|+|+.+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 36899999999999999999999999999999999999999999999999853
No 67
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.44 E-value=7e-15 Score=130.89 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=53.9
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHH------------------hC---CCcccEEeecccchhHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRE------------------LG---LEPLQVKFWFQNKRTQM 113 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~------------------Lg---Ls~rQVkvWFQNRRaK~ 113 (673)
.+++||.|+.||++|+..||..|+.++||+..+|.+||.. || |++.||++||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 4567888999999999999999999999999999999999 88 99999999999999999
Q ss_pred HHHHH
Q 045292 114 KAQHE 118 (673)
Q Consensus 114 Kr~~~ 118 (673)
|+++.
T Consensus 86 k~k~~ 90 (99)
T 1lfb_A 86 AFRHK 90 (99)
T ss_dssp SCCC-
T ss_pred HHhch
Confidence 87653
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.43 E-value=1.1e-14 Score=121.55 Aligned_cols=55 Identities=31% Similarity=0.492 Sum_probs=52.4
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
..+|..|+..||+.|+.++||+..+|.+||.++||+++||++||||||+|+|+++
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4689999999999999999999999999999999999999999999999999854
No 69
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.42 E-value=1.4e-14 Score=119.05 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=46.1
Q ss_pred hhHHHHHHHhH-hcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 67 QRQIQEMEAFF-KECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 67 ~~Ql~~LE~~F-~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
+.|+..||+.| ..++||+..+|.+||++|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 67899999999999999999999999999999999985
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.42 E-value=3.7e-14 Score=135.62 Aligned_cols=61 Identities=26% Similarity=0.513 Sum_probs=57.0
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
+++||+|++|+.+|+..||..|..++||+..+|.+||.++||+++||++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4556788999999999999999999999999999999999999999999999999999973
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-14 Score=116.79 Aligned_cols=52 Identities=13% Similarity=0.299 Sum_probs=49.1
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
..+.+|+..||+.|..++||+..+|.+||+++||+++||++||||||+|.++
T Consensus 9 ~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 9 PPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 4568999999999999999999999999999999999999999999998765
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.37 E-value=5.2e-14 Score=135.46 Aligned_cols=63 Identities=27% Similarity=0.353 Sum_probs=54.6
Q ss_pred CCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 55 QHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 55 ~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
..++||+|+.||.+|+..||..|+.++||+..+|.+||.++||+++||++||||||+|+|+..
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 345678899999999999999999999999999999999999999999999999999998753
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.4e-13 Score=113.94 Aligned_cols=58 Identities=28% Similarity=0.460 Sum_probs=50.8
Q ss_pred ccChhHHHHHHHhHh---cCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHHH
Q 045292 64 RHTQRQIQEMEAFFK---ECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERHE 121 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~---~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~e 121 (673)
+|+.+|+..|+..|. .++||+..+|.+||.++||+++||++||||||+|+|+...++.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 699999999999999 9999999999999999999999999999999999998765543
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.22 E-value=8.2e-13 Score=130.71 Aligned_cols=63 Identities=17% Similarity=0.306 Sum_probs=53.7
Q ss_pred CCCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhC---------------------CCcccEEeecccchh
Q 045292 53 PSQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELG---------------------LEPLQVKFWFQNKRT 111 (673)
Q Consensus 53 ~~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~Lg---------------------Ls~rQVkvWFQNRRa 111 (673)
+..+++||.|+.|++.|+..||+.|..++||+..+|.+||..++ |++.||++||||||+
T Consensus 110 ~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~ 189 (194)
T 1ic8_A 110 LPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 189 (194)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHH
T ss_pred cccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhh
Confidence 34567788899999999999999999999999999999999999 999999999999999
Q ss_pred HHHH
Q 045292 112 QMKA 115 (673)
Q Consensus 112 K~Kr 115 (673)
++|.
T Consensus 190 ~~k~ 193 (194)
T 1ic8_A 190 EEAF 193 (194)
T ss_dssp HCC-
T ss_pred hhhc
Confidence 9875
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.12 E-value=1.9e-11 Score=106.50 Aligned_cols=58 Identities=26% Similarity=0.429 Sum_probs=53.3
Q ss_pred cccChhHHHHHHHhHhc---CCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHHHHH
Q 045292 63 HRHTQRQIQEMEAFFKE---CPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQHERH 120 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~---~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~~r~ 120 (673)
+-|+.+++..|+.+|.+ ++||+..+|.+||+++||+++||++||||||.|+|+...++
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999987 89999999999999999999999999999999999865443
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.06 E-value=2.5e-11 Score=121.77 Aligned_cols=62 Identities=19% Similarity=0.404 Sum_probs=53.2
Q ss_pred CCCCCCCcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhC---------------------CCcccEEeecccch
Q 045292 52 DPSQHPKRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELG---------------------LEPLQVKFWFQNKR 110 (673)
Q Consensus 52 ~~~~~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~Lg---------------------Ls~rQVkvWFQNRR 110 (673)
.+.++++||.|+.|++.|+..||+.|..++||+..+|++||+.+| |++.||++||||||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 345677888899999999999999999999999999999999998 89999999999999
Q ss_pred hHH
Q 045292 111 TQM 113 (673)
Q Consensus 111 aK~ 113 (673)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 864
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=4.2e-11 Score=99.47 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=44.0
Q ss_pred hhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhH
Q 045292 67 QRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQ 112 (673)
Q Consensus 67 ~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK 112 (673)
.+|+..||.+|..+++|+..++.+||..+||+.++||+||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5689999999999999999999999999999999999999999973
No 78
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.03 E-value=4e-09 Score=105.45 Aligned_cols=161 Identities=11% Similarity=0.202 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCccc---ch----hhhhcccc--cceeee-----------------------------
Q 045292 240 PMIVELAVAAMEEFLRMAQAGDPLWT---DQ----NQWSSVFC--GIVSRA----------------------------- 281 (673)
Q Consensus 240 ~~~~~lA~~Am~El~~la~~~~plW~---D~----~~w~~~Fp--~ivarA----------------------------- 281 (673)
...+++++.|+++++++... .--|- +. .-|....| +.+-|+
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~-~~~W~~~~~~~~g~~vy~~~~~~~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~Wd~~~ 99 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQ-EENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTV 99 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-GGGCEEEEECTTCCEEEEEEETTTEEEEEEEEEESSCHHHHHHHTTTCHHHHTTTCTTE
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCCEEEEecCCCCEEEEEecCCCCceEEEEEEecCCHHHHHHHHHhCccchhhccccc
Confidence 56689999999999999863 34686 11 12333222 222233
Q ss_pred eEeEEeecccCCCCCCceeeeehhhccc--CCCccCceeEEEEeeeecCCCeEEEEEEecCCCC-C--CCCcceeecCCc
Q 045292 282 MTIEVLSTGVAGNYNGALQVMTAEFQVP--SPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR-P--SPTSKCRRRPSG 356 (673)
Q Consensus 282 ~t~~vis~g~~g~~~G~lqlm~ael~~~--SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~-~--~~~~~~~~~PSG 356 (673)
...+||..-.. ++ .+ +-++..+ .+++++|||.++|+++.. ++.++|+-.|++.-. | ..++|+..+++|
T Consensus 100 ~~~~vle~~~~----~t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g 172 (229)
T 1em2_A 100 TACQILQRVED----NT-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSHSAKPPTHKYVRGENGPGG 172 (229)
T ss_dssp EEEEEEEEETT----TE-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCCTTSCCCTTSEECEECSEE
T ss_pred ceEEEEEecCC----Ce-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccCCCCCCCCCCEeeeecccE
Confidence 13334333221 12 23 4446655 578999999999999997 566999999997442 1 168999999999
Q ss_pred ceEEecC--CCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 045292 357 CLIQELP--NGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERL 412 (673)
Q Consensus 357 clIq~~~--nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~l 412 (673)
++|++++ +|.|+|||+-|++..-+ +| +.++++.+.-+.-.+++.|+.+|+.+
T Consensus 173 ~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 173 MIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp EEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999987 67899999999987765 55 67788888888888999998888754
No 79
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=98.96 E-value=2.1e-09 Score=109.01 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=80.7
Q ss_pred eeeehhhcccCCCccCceeEEEEeeee-cCCCeEEEEEEecCCC--CCCCCcceeecCCcceEEecCCCceEEEEEEeee
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQ-HSDGTWAVVDVSLDNL--RPSPTSKCRRRPSGCLIQELPNGYSKVIWVEHVE 376 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~-~~~g~w~VvDvSld~~--~~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e 376 (673)
.++|..+..|.| +++|||.++||.++ +++|.++||-.|++.- .+..++|+..+++|++|+|+++|.|+|||+-|++
T Consensus 119 ~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~g~VR~~~~~~g~~i~P~~~~~t~vt~~~~~D 197 (237)
T 2pso_A 119 EIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLLGGVRAVVMDSQYLIEPCGSGKSRLTHICRID 197 (237)
T ss_dssp EEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCCSSEECCEEEEEEEEEECSTTCEEEEEEEEEC
T ss_pred EEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCCCcEEEEEeccEEEEEECCCCCEEEEEEEEeC
Confidence 567777776665 79999999999985 7899999999999753 2226899999999999999999999999999999
Q ss_pred ecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 377 VDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 377 ~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
.. ..+|.-+..++. -.+-..++.|+.+++
T Consensus 198 p~-G~iP~~ln~~~~----~~~~~~l~~LR~~~~ 226 (237)
T 2pso_A 198 LK-GHSPEWYSKGFG----HLCAAEVARIRNSFQ 226 (237)
T ss_dssp CS-SSCTTTTTTHHH----HHHHHHHHHHHHTTS
T ss_pred CC-CCchHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 87 467766533332 222245666655433
No 80
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=98.93 E-value=7.9e-09 Score=102.85 Aligned_cols=158 Identities=19% Similarity=0.259 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCccc-------chhhhhcccc--cceeeee-----------------------------E
Q 045292 242 IVELAVAAMEEFLRMAQAGDPLWT-------DQNQWSSVFC--GIVSRAM-----------------------------T 283 (673)
Q Consensus 242 ~~~lA~~Am~El~~la~~~~plW~-------D~~~w~~~Fp--~ivarA~-----------------------------t 283 (673)
...+|++||+|++++.+ ++.-|. +..-|..-+| +.+-||. .
T Consensus 12 y~~~~~~~~~~~l~~~~-~~~gW~~~~~~~~gv~vy~~~~~~~g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~Wd~~~~~ 90 (221)
T 3p0l_A 12 YLQQGEEAMQKALGILS-NQEGWKKESQQDNGDKVMSKVVPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKE 90 (221)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTCEEEEECTTSCEEEEEECSSSCEEEEEEEEESSCHHHHHHHHTTTGGGTTTSCTTCSE
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCeEeeecCCCcEEEEEEcCCCceEEEEEEEEcCCHHHHHHHHHhccchhhhcCcchhe
Confidence 47899999999999975 445697 1112222222 2222331 3
Q ss_pred eEEeecccCCCCCCceeeeehhhc-ccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCC-C--CCCcceeecCCcceE
Q 045292 284 IEVLSTGVAGNYNGALQVMTAEFQ-VPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR-P--SPTSKCRRRPSGCLI 359 (673)
Q Consensus 284 ~~vis~g~~g~~~G~lqlm~ael~-~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~-~--~~~~~~~~~PSGclI 359 (673)
.++|..-.. + -.+.|.... .+.+++++|||.++||.++. +|.++|+-.|++.-. | ..++|+..+++|++|
T Consensus 91 ~~vle~~~~----~-t~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i 164 (221)
T 3p0l_A 91 IKVLQKIGK----D-TFITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVL 164 (221)
T ss_dssp EEEEEECSS----S-EEEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCCTTSCCCTTSEECEECSCEEEE
T ss_pred EEEEEecCC----C-eEEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccCCCCCCCCCeEEEeccceEEEE
Confidence 334443222 1 245553321 23568999999999999986 688999999987431 2 268999999999999
Q ss_pred EecCCC--ceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 360 QELPNG--YSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 360 q~~~nG--~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
+++++| .|+|||+-|++..-+ +| +.+++..+.-+.-.++..|+++|+
T Consensus 165 ~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 165 HPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp EEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988 999999999998766 44 456777777788889999988887
No 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.93 E-value=8e-11 Score=125.94 Aligned_cols=57 Identities=26% Similarity=0.500 Sum_probs=53.2
Q ss_pred CcccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHH
Q 045292 58 KRKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114 (673)
Q Consensus 58 krR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~K 114 (673)
.++.++.++.+|+..||+.|+.++||+..+|.+||+++||+++|||+||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 345667899999999999999999999999999999999999999999999999875
No 82
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=98.64 E-value=2.8e-07 Score=91.99 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=84.9
Q ss_pred eeeehhhcc-cCCCccCceeEEEEeeeecCCCeEEEEEEecCCCC-CCCCcceeecCCcceEEecCCC--ceEEEEEEee
Q 045292 300 QVMTAEFQV-PSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR-PSPTSKCRRRPSGCLIQELPNG--YSKVIWVEHV 375 (673)
Q Consensus 300 qlm~ael~~-~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~-~~~~~~~~~~PSGclIq~~~nG--~skVtwVeH~ 375 (673)
.+.|.-+.. +-|++.+|||.++|+.+..++| ++|+-+|++.-. +..++|++.+++|++|+++++| .|+|||+-|+
T Consensus 113 ~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp~~~~g~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~ 191 (224)
T 1jss_A 113 CVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWSETRPEFVRGYNHPCGWFCVPLKDSPSQSLLTGYIQT 191 (224)
T ss_dssp EEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCCCCCTTSEECEECSEEEEEEEETTEEEEEEEEEEECE
T ss_pred EEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecCCCCCCCEEEEecccEEEEEEcCCCCCceEEEEEEEe
Confidence 455655543 3457999999999999999877 788999987433 3378999999999999999875 8999999999
Q ss_pred eecCccccccchhhhcchhhHHHHHHHHHHHHHHH
Q 045292 376 EVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCE 410 (673)
Q Consensus 376 e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce 410 (673)
+..-+ +| +.+++..+.-+...++..|+.+|+
T Consensus 192 Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 192 DLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp ECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 88754 44 466777777888889999987764
No 83
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=98.55 E-value=5.2e-07 Score=88.50 Aligned_cols=107 Identities=17% Similarity=0.238 Sum_probs=86.4
Q ss_pred eeeehhhcccCCCccCceeEEEEeeeecC-CC--eEEEEEEecCCCC-C--CCCcceeecCCcceEEecCCCceEEEEEE
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQHS-DG--TWAVVDVSLDNLR-P--SPTSKCRRRPSGCLIQELPNGYSKVIWVE 373 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~~~-~g--~w~VvDvSld~~~-~--~~~~~~~~~PSGclIq~~~nG~skVtwVe 373 (673)
.++|.++..|.|+ ..|||.++|+++.++ +| .|+|+-.|++.-. | ..++|+..+++|++|++.++|.|+||++-
T Consensus 97 ~i~~~~~~~p~p~-~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~ 175 (214)
T 1ln1_A 97 TVVYWEVKYPFPM-SNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYY 175 (214)
T ss_dssp EEEEEEECCCTTS-CCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEE
T ss_pred EEEEEEEEcCCCC-CCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEE
Confidence 4789999998886 999999999999875 66 4999999986432 1 26799999999999999999999999999
Q ss_pred eeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 045292 374 HVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCER 411 (673)
Q Consensus 374 H~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~ 411 (673)
|++.. ..+|.- +++..+.-++..++..|+++|+.
T Consensus 176 ~~Dp~-G~iP~~---l~n~~~~~~~~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 176 FDNPG-GQIPSW---LINWAAKNGVPNFLKDMARACQN 209 (214)
T ss_dssp EECCS-SCCCHH---HHHHHHHTHHHHHHHHHHHHHHT
T ss_pred EECCC-CcccHH---HHHHHHHHHhHHHHHHHHHHHHh
Confidence 99987 456643 34455556677888888888764
No 84
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.37 E-value=1.3e-08 Score=74.67 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=17.7
Q ss_pred ccEEeecccchhHHHHHHHH
Q 045292 100 LQVKFWFQNKRTQMKAQHER 119 (673)
Q Consensus 100 rQVkvWFQNRRaK~Kr~~~r 119 (673)
+||+|||||||+|||+++..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 69999999999999997654
No 85
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=98.35 E-value=1.7e-06 Score=89.09 Aligned_cols=84 Identities=10% Similarity=0.119 Sum_probs=67.4
Q ss_pred eeeehhhcccCC--CccCceeEEEEeeee-cCCCe-EEEEEEecCCC--CCC-CCcceeecCCcceEEecCCCceEEEEE
Q 045292 300 QVMTAEFQVPSP--LVPTRENYFVRYCKQ-HSDGT-WAVVDVSLDNL--RPS-PTSKCRRRPSGCLIQELPNGYSKVIWV 372 (673)
Q Consensus 300 qlm~ael~~~Sp--Lvp~Re~~fLRyck~-~~~g~-w~VvDvSld~~--~~~-~~~~~~~~PSGclIq~~~nG~skVtwV 372 (673)
.++| ++..|+| ++++|||..|||.+. ..+|. ++|+-+|++.- .+. .|+|++.+|+||+|+++++|.|+||++
T Consensus 133 ~ivY-~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~ 211 (258)
T 3fo5_A 133 DAIY-HVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPEYRRGETLCSGFCLWREGDQLTKVSYY 211 (258)
T ss_dssp EEEE-EEEECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEEETTEEEEEEE
T ss_pred eEEE-EEecCCccCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEECCCCCEEEEEE
Confidence 4677 6777886 799999999999987 44775 99999998632 222 689999999999999999999999999
Q ss_pred EeeeecCccccccc
Q 045292 373 EHVEVDDRSVHNIY 386 (673)
Q Consensus 373 eH~e~d~~~v~~l~ 386 (673)
-|++ +..+|..-
T Consensus 212 ~q~d--pG~lP~~~ 223 (258)
T 3fo5_A 212 NQAT--PGVLNYVT 223 (258)
T ss_dssp ESCC--GGGHHHHH
T ss_pred EeeC--CCCCCceE
Confidence 8887 34454443
No 86
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.07 E-value=2.4e-05 Score=75.29 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=78.7
Q ss_pred eeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCC--CCCcceeecCCcceEEecCCCceEEEEEEeeee
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRP--SPTSKCRRRPSGCLIQELPNGYSKVIWVEHVEV 377 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~--~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~ 377 (673)
.++|.++..|-| +..|||.++|+.....+|...|+=.+.....| ..++|++.+++|++|++ ++|.|+||++-|++.
T Consensus 72 ~i~y~~~~~p~p-~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp 149 (189)
T 3qsz_A 72 QYHYLDNSAPWP-VSNRDGVYHFTYEKAGDGAITVRVEAVPDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASP 149 (189)
T ss_dssp EEEEEEECCSSS-CCCEEEEEEEEEEECTTSCEEEEEEECTTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECS
T ss_pred eEEEEEeecCCC-cCCcceEEEEEEEECCCCeEEEEEEcCCCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCC
Confidence 567888777765 78999999999999888876555333221112 26799999999999999 999999999999987
Q ss_pred cCccccccchhhhcchhhHHHHHHHHHHHHHHHH
Q 045292 378 DDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCER 411 (673)
Q Consensus 378 d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~ 411 (673)
.- .+|. -+++..+.-+.-..+..|+++|+.
T Consensus 150 ~G-~iP~---~lvn~~~~~~~~~~l~~L~k~~~~ 179 (189)
T 3qsz_A 150 GG-SIPS---WLANQTVVETPFGTLKALRSHLRQ 179 (189)
T ss_dssp CS-SSCH---HHHHHTTTHHHHHHHHHHHHHHTC
T ss_pred CC-CCCH---HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 63 3443 345555556667788888887764
No 87
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=97.80 E-value=9.9e-05 Score=74.73 Aligned_cols=108 Identities=12% Similarity=0.194 Sum_probs=80.5
Q ss_pred eeeehhhcccCCCccCceeEEEEeeeecC----C--CeEEEEEEecCCCC-C-C-CCcceee---cCCcceEEecC----
Q 045292 300 QVMTAEFQVPSPLVPTRENYFVRYCKQHS----D--GTWAVVDVSLDNLR-P-S-PTSKCRR---RPSGCLIQELP---- 363 (673)
Q Consensus 300 qlm~ael~~~SpLvp~Re~~fLRyck~~~----~--g~w~VvDvSld~~~-~-~-~~~~~~~---~PSGclIq~~~---- 363 (673)
.++|..+..|.|+ ..|||.++|+.++.. + +.|+|+..|++.-. | . .++|+.. +.+|++|++..
T Consensus 120 ~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~ 198 (255)
T 2e3n_A 120 IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGNQE 198 (255)
T ss_dssp EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CCCC
T ss_pred EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCCcc
Confidence 6888888888886 889999999999873 3 59999999997542 1 1 5799984 67999999873
Q ss_pred ----CCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 045292 364 ----NGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERL 412 (673)
Q Consensus 364 ----nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~l 412 (673)
++.|+||++-|++..- .+|.- +++.....+.-..+..|+++++..
T Consensus 199 l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 199 ISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYPKFLKRFTSYVQEK 247 (255)
T ss_dssp CCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhccccHHHHHHHHHHHHh
Confidence 3579999999998764 45543 345555667777888888877744
No 88
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.77 E-value=0.015 Score=57.59 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHHHHHHhhhccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhh--
Q 045292 432 EGRKSMLKLAERMVTSFCTGVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFL-- 509 (673)
Q Consensus 432 ~Gr~sll~La~Rm~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL-- 509 (673)
-.+..++++|+..+..|-.-+.. ..+|.... ..++|+|..+...+. + |.++ ++..-+++||..||++|
T Consensus 19 ~~~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~~---~-~~~~--k~~~~v~~~~~~v~~~l~~ 88 (231)
T 2r55_A 19 YFQSMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVEF---P-GNLY--RGEGIVYGTLEEVWDCVKP 88 (231)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSSS---S-SEEE--EEEEEESSCHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCCC---C-CcEE--EEEEEECCCHHHHHHHHHh
Confidence 34456999999999988876643 37898774 356899988876332 2 3444 44555599999999999
Q ss_pred cccCccchhhhhcCCCccceeeeccCCCCCCceEEEEE-eccC---CC-CCCceeEEeeeccCCCCcEE-EEeecchhhh
Q 045292 510 RDENSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLR-VNSA---NS-SQSNMLVLQESCTDSTGSYV-IYAPVDIVAM 583 (673)
Q Consensus 510 rd~~~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsll~-~~~~---~~-~~~~~~iLQes~~D~sgs~v-VyAPvD~~~~ 583 (673)
.|...|.+||-... ..+.+..|. .... |++ +... .. ...+..+|.-...+.-|+++ +.-.||-+.+
T Consensus 89 ~d~~~r~~Wd~~~~--~~~vle~i~----~~~~--i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~~ 160 (231)
T 2r55_A 89 AVGGLRVKWDENVT--GFEIIQSIT----DTLC--VSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLC 160 (231)
T ss_dssp --CCSHHHHCTTCS--EEEEEEECS----SSEE--EEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTTS
T ss_pred hCcchhhhhccccc--eeEEEEEcC----CCEE--EEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCCC
Confidence 89999999995332 233333442 1222 333 2211 11 23456666655666668775 5777876431
Q ss_pred hhhhcCCCCCC--CcccCCccEEcCCCCCCCCCCccccCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhhHHHH
Q 045292 584 NMVLSGGDPDY--VALLPSGFAILPDGPGFNGGGILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATVNSLIKCTVER 660 (673)
Q Consensus 584 ~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv~~li~~tv~~ 660 (673)
- ..+.+ +.++|+||.|-|.... .++|.+|.-+|+=... .|.. .+..+ +..-+-.++++
T Consensus 161 P-----~~~~~VR~~~~~~g~~i~p~~~~----------~~~t~vt~~~~~Dp~G~iP~~--lvn~~--~~~~~~~~~~~ 221 (231)
T 2r55_A 161 P-----PKPGFVRGFNHPCGCFCEPLPGE----------PTKTNLVTFFHTDLSGYLPQN--VVDSF--FPRSMTRFYAN 221 (231)
T ss_dssp C-----CCTTCEEEEECSEEEEEEECC------------CCCEEEEEEECEECCSSCCHH--HHHHH--HHHHHHHHHHH
T ss_pred C-----CCCCCEEEEEEeeEEEEEEeCCC----------CCcEEEEEEEEeCCCCCccHH--HHHHH--HhHhHHHHHHH
Confidence 1 11233 3478999999994211 1578888877765433 2311 11111 12234467777
Q ss_pred HHHHcC
Q 045292 661 IKAAVM 666 (673)
Q Consensus 661 Ik~Al~ 666 (673)
++.++.
T Consensus 222 Lr~~~~ 227 (231)
T 2r55_A 222 LQKAVK 227 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777653
No 89
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=96.36 E-value=0.0088 Score=59.27 Aligned_cols=175 Identities=17% Similarity=0.244 Sum_probs=98.8
Q ss_pred CCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeeccCC
Q 045292 457 AHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIANG 536 (673)
Q Consensus 457 ~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g 536 (673)
..+|..... .++|+|..+...+.+ |-+. ++..-+++||+.||++|.|...|.+||-.... .+.+-+|
T Consensus 42 ~~~W~~~~~--~~gv~vy~~~~~~~~----~~~~--k~~~~v~~~~~~v~~~l~d~~~r~~Wd~~~~~--~~vle~i--- 108 (224)
T 1jss_A 42 EDEWRVAKK--AKDVTVWRKPSEEFN----GYLY--KAQGVMDDVVNNVIDHIRPGPWRLDWDRLMTS--LDVLEHF--- 108 (224)
T ss_dssp GGGCEEEEE--ETTEEEEEEECSSSS----SEEE--EEEEEESSCHHHHHHHHSSSTTHHHHCSSEEE--EEEEEEC---
T ss_pred CCCCEEEEE--CCCEEEEEEeccCCC----ceEE--EEEEEEeCCHHHHHHHHhCcccccccccceee--EEEEEEc---
Confidence 668986643 378999998653322 3333 45555699999999999999999999953211 2333333
Q ss_pred CCCCceEEEEEeccCC---CCCCceeEEeeeccCCCCcEEEEeecchhhhhhhhcCCCCCC--CcccCCccEEcCCCCCC
Q 045292 537 RDPGNCVSLLRVNSAN---SSQSNMLVLQESCTDSTGSYVIYAPVDIVAMNMVLSGGDPDY--VALLPSGFAILPDGPGF 611 (673)
Q Consensus 537 ~~~gn~vsll~~~~~~---~~~~~~~iLQes~~D~sgs~vVyAPvD~~~~~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~ 611 (673)
+..+.|--....... ....+..++.....+..|.+++.-.||-+.+ .+.+ +.++++||.|-|.+..
T Consensus 109 -d~~~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~~vi~~~Sv~hp~~-------~~g~VR~~~~~~g~~i~p~~~~- 179 (224)
T 1jss_A 109 -EENCCVMRYTTAGQLLNIISPREFVDFSYTVGYEEGLLSCGVSVEWSET-------RPEFVRGYNHPCGWFCVPLKDS- 179 (224)
T ss_dssp -STTEEEEEEEECCBTTTTBCCEEEEEEEEEEEETTEEEEEEEECCCCCC-------CTTSEECEECSEEEEEEEETTE-
T ss_pred -CCCeEEEEEEcccccCCCCCCCeEEEEEEEEEcCCeEEEEEeeeecCCC-------CCCCEEEEecccEEEEEEcCCC-
Confidence 223344333332221 1334566666544555566666777776542 1333 3578999999983211
Q ss_pred CCCCccccCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 612 NGGGILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 612 ~~~~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
..+|.+|.-+|+=... .|..- +..+ +...+-.+++.++.++.
T Consensus 180 ---------~~~t~vt~~~~~Dp~G~iP~~l--vn~~--~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 180 ---------PSQSLLTGYIQTDLRGMIPQSA--VDTA--MASTLANFYSDLRKGLR 222 (224)
T ss_dssp ---------EEEEEEEEEECEECCSCCCHHH--HHHH--HHHHHHHHHHHHHHHTC
T ss_pred ---------CCceEEEEEEEeCCCCCccHHH--HHHH--HHHhHHHHHHHHHHHHh
Confidence 1367888666554332 23110 1111 12334456666666653
No 90
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=96.29 E-value=0.034 Score=53.05 Aligned_cols=172 Identities=10% Similarity=0.111 Sum_probs=96.4
Q ss_pred CCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeeccCCC
Q 045292 458 HAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIANGR 537 (673)
Q Consensus 458 ~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~ 537 (673)
++|..... .++|+|..+...+ . .+..-++...++.||+.||++|.|...|.+||-. +.+.--|.+
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~-~-----~~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~-----~~~~~vle~-- 67 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEG-S-----PLREFRGEVRLKAAADDVVKVLRDANAFRQWMPD-----VAASELLKA-- 67 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTT-C-----SSCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTT-----EEEEEEEEE--
T ss_pred CCCEEEEc--CCCEEEEEEeCCC-C-----CeEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHh-----cCEEEEEee--
Confidence 57986643 4689999988632 1 2234566777799999999999999999999953 333333333
Q ss_pred CCCceEEEEEeccCCCCCC-ceeEEeeeccCCCCcEEEEeecchhhhhhhhcCCCCCC--CcccCCccEEcCCCCCCCCC
Q 045292 538 DPGNCVSLLRVNSANSSQS-NMLVLQESCTDSTGSYVIYAPVDIVAMNMVLSGGDPDY--VALLPSGFAILPDGPGFNGG 614 (673)
Q Consensus 538 ~~gn~vsll~~~~~~~~~~-~~~iLQes~~D~sgs~vVyAPvD~~~~~~vm~G~d~~~--v~lLPSGF~I~Pdg~~~~~~ 614 (673)
+.+..+.-......-+-.+ +..++.....|..|.+++..-.+-+.+ ...+.+ +..+++||.|-| |.
T Consensus 68 ~~~~~i~y~~~~~p~p~~~RD~v~~~~~~~~~~g~~~i~~~~~~~~~-----P~~~~~VR~~~~~~~~~i~p-~~----- 136 (189)
T 3qsz_A 68 TDTEQYHYLDNSAPWPVSNRDGVYHFTYEKAGDGAITVRVEAVPDYL-----PLRKGKVRIPRAKGQWTLVP-DA----- 136 (189)
T ss_dssp CSSEEEEEEEECCSSSCCCEEEEEEEEEEECTTSCEEEEEEECTTSS-----CCCTTSEECCCEEEEEEEEE-CS-----
T ss_pred cCCceEEEEEeecCCCcCCcceEEEEEEEECCCCeEEEEEEcCCCcc-----CCCCCeEEeeEeeEEEEEEE-CC-----
Confidence 3334443333332212233 444444444555576554433221100 011222 457888999988 32
Q ss_pred CccccCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 615 GILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 615 ~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
++|.+|.-+|+=... .|.. .+..+ +...+-.++++++.++.
T Consensus 137 -------~~t~vt~~~~~dp~G~iP~~--lvn~~--~~~~~~~~l~~L~k~~~ 178 (189)
T 3qsz_A 137 -------DGVDVTYQMHASPGGSIPSW--LANQT--VVETPFGTLKALRSHLR 178 (189)
T ss_dssp -------SSEEEEEEEEECSCSSSCHH--HHHHT--TTHHHHHHHHHHHHHHT
T ss_pred -------CeEEEEEEEEeCCCCCCCHH--HHHHH--HHHHHHHHHHHHHHHhh
Confidence 478888777765443 2221 11111 11233457778877764
No 91
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=95.52 E-value=0.22 Score=48.92 Aligned_cols=194 Identities=13% Similarity=0.212 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHhhhccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHhhhh-ccc
Q 045292 434 RKSMLKLAERMVTSFCTGVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFL-RDE 512 (673)
Q Consensus 434 r~sll~La~Rm~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fL-rd~ 512 (673)
...-.++++.-...+..-+. ..++|.... ...++|.|..++. +|. |.++ ++..-+++||+.||++| .|.
T Consensus 9 ~~~y~~~~~~~~~~~l~~~~--~~~gW~~~~-~~~~gv~vy~~~~---~~~--g~~~--k~~~~v~~~~~~v~~~l~~d~ 78 (221)
T 3p0l_A 9 ELAYLQQGEEAMQKALGILS--NQEGWKKES-QQDNGDKVMSKVV---PDV--GKVF--RLEVVVDQPMERLYEELVERM 78 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SCTTCEEEE-ECTTSCEEEEEEC---SSS--CEEE--EEEEEESSCHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHHHHh--CCCCCeEee-ecCCCcEEEEEEc---CCC--ceEE--EEEEEEcCCHHHHHHHHHhcc
Confidence 34455666666666555544 356898763 1246788888875 221 4444 55555699999999999 487
Q ss_pred CccchhhhhcCCCccceeeeccCCCCCCceEEEEEe--cc--CCC-CCCceeEEeeeccCCCCcEEEE-eecchhhhhhh
Q 045292 513 NSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRV--NS--ANS-SQSNMLVLQESCTDSTGSYVIY-APVDIVAMNMV 586 (673)
Q Consensus 513 ~~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsll~~--~~--~~~-~~~~~~iLQes~~D~sgs~vVy-APvD~~~~~~v 586 (673)
..|.+||-... ..+.+-++. .+.. |++. .. ..+ ...+..+|.-...+. |++++. -.|+-+.+-
T Consensus 79 ~~r~~Wd~~~~--~~~vle~~~----~~t~--I~y~~~~~~~~~~v~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P-- 147 (221)
T 3p0l_A 79 EAMGEWNPNVK--EIKVLQKIG----KDTF--ITHELAAEAAGNLVGPRDFVSVRCAKRRG-STCVLAGMATDFGNMP-- 147 (221)
T ss_dssp GGTTTSCTTCS--EEEEEEECS----SSEE--EEEEEECC---CCSCCEEEEEEEEEEECS-SCEEECCEECCCTTSC--
T ss_pred chhhhcCcchh--eEEEEEecC----CCeE--EEEEeeccccCCccCCceEEEEEEEEEcC-CeEEEEEEeccCCCCC--
Confidence 89999995321 133344442 2222 3332 11 112 233556655544443 555554 345543211
Q ss_pred hcCCCCCCC--cccCCccEEcCCCCCCCCCCccccCCCCceeEEeeehhccC-Ccccccccchhhhh-hhhhhhHHHHHH
Q 045292 587 LSGGDPDYV--ALLPSGFAILPDGPGFNGGGILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATV-NSLIKCTVERIK 662 (673)
Q Consensus 587 m~G~d~~~v--~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv-~~li~~tv~~Ik 662 (673)
..+.+| .++|+||.|-|.+.+ ..+|.+|.-+|+=... .|.. -|..+ ..-+-.+++.++
T Consensus 148 ---~~~g~VR~~~~~~g~~i~p~~~~----------~~~t~vt~~~~~Dp~G~iP~~-----lvn~~~~~~~~~~~~~Lr 209 (221)
T 3p0l_A 148 ---EQKGVIRAEHGPTCMVLHPLAGS----------PSKTKLTWLLSIDLKGWLPKS-----IINQVLSQTQVDFANHLR 209 (221)
T ss_dssp ---CCTTSEECEECSCEEEEEEETTE----------EEEEEEEEEECEECCSSCCHH-----HHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCeEEEeccceEEEEEECCCC----------CCcEEEEEEEEecCCCCCCHH-----HHHHHHHHHHHHHHHHHH
Confidence 113333 578999999994321 1378888887775443 2211 11111 133446888888
Q ss_pred HHcC
Q 045292 663 AAVM 666 (673)
Q Consensus 663 ~Al~ 666 (673)
.++.
T Consensus 210 ~~~~ 213 (221)
T 3p0l_A 210 KRLE 213 (221)
T ss_dssp HHTC
T ss_pred HHHh
Confidence 8887
No 92
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=95.42 E-value=0.14 Score=51.32 Aligned_cols=176 Identities=22% Similarity=0.285 Sum_probs=100.5
Q ss_pred CCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhH-hhhhcccCccchhhhhcCCCccceeeecc
Q 045292 456 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRI-FDFLRDENSRSEWDILSNGGLVQEMAHIA 534 (673)
Q Consensus 456 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~v-f~fLrd~~~R~eWd~l~~g~~vqe~~~ia 534 (673)
...+|..... .++|+|..++.. .|.| +..-++..-++.+|+.+ +++|.| |.+||-.+-. ++.+-.|.
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~--~~~~---~~~~K~~~~v~~~~~~v~~~ll~d---r~~Wd~~~~~--~~vle~id 115 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVG--DGNP---LKLWKASVEVEAPPSVVLNRVLRE---RHLWDEDFVQ--WKVVETLD 115 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCC--SSCC---CCEEEEEEEESSCHHHHHHHHHHC---GGGTCTTBCC--CEEEEEEE
T ss_pred CCCCCEEEec--CCCeEEEEEEcC--CCCC---cEEEEEEEEEcCChHHHHHHHHhh---hhhHHhhhce--EEEEEEcC
Confidence 3457987643 578999999852 2222 23446677778777666 467777 9999954322 34444442
Q ss_pred CCCCCCceEEEEEeccCCCC-CCceeEEeeeccC-CCCcEEE-EeecchhhhhhhhcCCCCCCCcccCCccEEcCCCCCC
Q 045292 535 NGRDPGNCVSLLRVNSANSS-QSNMLVLQESCTD-STGSYVI-YAPVDIVAMNMVLSGGDPDYVALLPSGFAILPDGPGF 611 (673)
Q Consensus 535 ~g~~~gn~vsll~~~~~~~~-~~~~~iLQes~~D-~sgs~vV-yAPvD~~~~~~vm~G~d~~~v~lLPSGF~I~Pdg~~~ 611 (673)
..+.|.-.......+- ..+..++.-...| ..|++|| ...|+-+.+-. .|. =-+..+|+||.|-|.+.
T Consensus 116 ----~~~~I~y~~~~~p~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~--~g~--VR~~~~~~g~~i~P~~~-- 185 (237)
T 2pso_A 116 ----RQTEIYQYVLNSMAPHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQL--LGG--VRAVVMDSQYLIEPCGS-- 185 (237)
T ss_dssp ----TTEEEEEEEECCSSSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCC--CSS--EECCEEEEEEEEEECST--
T ss_pred ----CCcEEEEEEecCCCCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCC--CCc--EEEEEeccEEEEEECCC--
Confidence 2333443333333222 2355555544455 3476665 44566543211 111 13568899999999532
Q ss_pred CCCCccccCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhhHHHHHHHHcCCC
Q 045292 612 NGGGILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATVNSLIKCTVERIKAAVMTD 668 (673)
Q Consensus 612 ~~~~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~~~ 668 (673)
++|.||.-+|+=... .|.. +. ..+...+..++.++|.++..-
T Consensus 186 ----------~~t~vt~~~~~Dp~G~iP~~---ln--~~~~~~~~~~l~~LR~~~~~~ 228 (237)
T 2pso_A 186 ----------GKSRLTHICRIDLKGHSPEW---YS--KGFGHLCAAEVARIRNSFQPL 228 (237)
T ss_dssp ----------TCEEEEEEEEECCSSSCTTT---TT--THHHHHHHHHHHHHHHTTSCC
T ss_pred ----------CCEEEEEEEEeCCCCCchHH---HH--HHHHHHHHHHHHHHHHHHHhh
Confidence 578888887775543 2321 11 223345557899999988654
No 93
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=95.27 E-value=0.14 Score=50.55 Aligned_cols=196 Identities=8% Similarity=0.105 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeecccCChhhHh-hhhcccC
Q 045292 435 KSMLKLAERMVTSFCTGVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIPVPPRRIF-DFLRDEN 513 (673)
Q Consensus 435 ~sll~La~Rm~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf-~fLrd~~ 513 (673)
+.-++.++.....|-.-+. ...+|..... ..++++|..+...+ .|.+. ++..-+++||..|| ++|.|..
T Consensus 21 ~~y~~~~~~a~~~~~~~l~--~~~~W~~~~~-~~~g~~vy~~~~~~-----~g~~~--k~~~~v~~~~~~v~~~~~~d~~ 90 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILA--QEENWKFEKN-NEYGDTVYTIEVPF-----HGKTF--ILKTFLPCPAELVYQEVILQPE 90 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHT--TGGGCEEEEE-CTTCCEEEEEEETT-----TEEEE--EEEEEESSCHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhh--CCCCCEEEEe-cCCCCEEEEEecCC-----CCceE--EEEEEecCCHHHHHHHHHhCcc
Confidence 4444555555545444443 3468986643 23578888776531 23344 44445599999999 9999999
Q ss_pred ccchhhhhcCCCccceeeeccCCCCCCceEEEEEeccC---CC-CCCceeEEeeeccCCCCcEEEEeecchhhhhhhhcC
Q 045292 514 SRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSA---NS-SQSNMLVLQESCTDSTGSYVIYAPVDIVAMNMVLSG 589 (673)
Q Consensus 514 ~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsll~~~~~---~~-~~~~~~iLQes~~D~sgs~vVyAPvD~~~~~~vm~G 589 (673)
.|.+||-... .++.+-+|. .++.| +..+... .. ...+.+++.-...+..+-+++...|+-+.+-
T Consensus 91 ~r~~Wd~~~~--~~~vle~~~----~~t~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~~~~~vi~~~Sv~~~~~P----- 158 (229)
T 1em2_A 91 RMVLWNKTVT--ACQILQRVE----DNTLI-SYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKP----- 158 (229)
T ss_dssp HHTTTCTTEE--EEEEEEEET----TTEEE-EEEEECCBTTTTBCCEEEEEEEEEEECSSEEEEEEEECCCTTSC-----
T ss_pred chhhcccccc--eEEEEEecC----CCeEE-EEEEecCcCCCCcCCCeeEEEEEEEEcCCEEEEEEecccCCCCC-----
Confidence 9999995331 123333442 22333 2222221 22 2235555555555544556666677765321
Q ss_pred CCCC--CCcccCCccEEcCCCCCCCCCCccccCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 590 GDPD--YVALLPSGFAILPDGPGFNGGGILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 590 ~d~~--~v~lLPSGF~I~Pdg~~~~~~~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
..+. -+.++++||.|-|... +.++|.+|.-+|+=... .|.. + +.. .+...+-.+++.++.++.
T Consensus 159 ~~~~~VR~~~~~~g~~i~p~~~----------~~~~t~vt~~~~~Dp~G~iP~~-l-~n~--~~~~~~~~~~~~Lr~~~~ 224 (229)
T 1em2_A 159 PTHKYVRGENGPGGMIVLKSAS----------NPRVCTFVWILNTDLKGRLPRY-L-IHQ--SLAATMFEFAFHLRQRIS 224 (229)
T ss_dssp CCTTSEECEECSEEEEEEECSS----------CTTCEEEEEEECEECCSSSCHH-H-HHH--HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeeeecccEEEEEecCC----------CCCcEEEEEEEEECCCCCCCHH-H-HHH--HHHHHHHHHHHHHHHHHH
Confidence 1122 2457899999998321 12578888877765433 2311 0 111 112344567777777663
No 94
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=95.12 E-value=0.12 Score=50.07 Aligned_cols=174 Identities=14% Similarity=0.201 Sum_probs=98.6
Q ss_pred CCCCccccccCCCCceEEEEccCCCCCCCCCceEEEEEEeeccc-CChhhHhhhhcccCccchhhhhcCCCccceeeecc
Q 045292 456 TAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVLSAATSFWIP-VPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIA 534 (673)
Q Consensus 456 ~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl~A~tS~wLp-v~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia 534 (673)
...+|..... .++|+|..+...+ ..+...++...++ +||+.||++|.|...|.+||-.. .+.--|-
T Consensus 26 ~~~~W~~~~~--~~~v~v~~~~~~~------~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~-----~~~~vle 92 (214)
T 1ln1_A 26 AGADWQLLVE--TSGISIYRLLDKK------TGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYV-----KELYEQE 92 (214)
T ss_dssp TTTTCEEEEE--ETTEEEEEEEETT------TTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTE-----EEEEEEE
T ss_pred CCCCcEEEEE--CCCeEEEEeccCC------CCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHH-----hhEEEec
Confidence 4568987754 3579998886522 2345667777887 99999999999999999999532 2221121
Q ss_pred CCCCCCceEEEEEeccCCCCCC-ceeEEeeec-cCCCCc--E-EEEeecchhhhhhhhcCCCCCC--CcccCCccEEcCC
Q 045292 535 NGRDPGNCVSLLRVNSANSSQS-NMLVLQESC-TDSTGS--Y-VIYAPVDIVAMNMVLSGGDPDY--VALLPSGFAILPD 607 (673)
Q Consensus 535 ~g~~~gn~vsll~~~~~~~~~~-~~~iLQes~-~D~sgs--~-vVyAPvD~~~~~~vm~G~d~~~--v~lLPSGF~I~Pd 607 (673)
. .|+.|.-......-+-.+ +..++.... .|..|. + ++.-.|+-+.+ ...+.. +..+++||.|-|.
T Consensus 93 ~---~~~~i~~~~~~~p~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~-----P~~~~~VR~~~~~~~~~i~p~ 164 (214)
T 1ln1_A 93 C---NGETVVYWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQL-----GERSGVIRVKQYKQSLAIESD 164 (214)
T ss_dssp E---TTEEEEEEEECCCTTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTB-----CCCTTSEEECCEEEEEEEEEC
T ss_pred c---CCCEEEEEEEEcCCCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCC-----CCCCCcEEEEEEEEEEEEecC
Confidence 1 123333333332222233 444444332 344553 3 44556665421 112344 4578999999884
Q ss_pred CCCCCCCCccccCCCCceeEEeeehhccC-CcccccccchhhhhhhhhhhHHHHHHHHcC
Q 045292 608 GPGFNGGGILEVGSGGSLLTVAFQILVDS-VPTAKLSLGSVATVNSLIKCTVERIKAAVM 666 (673)
Q Consensus 608 g~~~~~~~~~~~~~~gsllTvaFQ~l~~~-~~~a~~~~~sv~tv~~li~~tv~~Ik~Al~ 666 (673)
+ .++|.+|.-.|+=... .|.. .+..+ +...+-.++++++.++.
T Consensus 165 ~------------~~~t~v~~~~~~Dp~G~iP~~--l~n~~--~~~~~~~~l~~l~k~~~ 208 (214)
T 1ln1_A 165 G------------KKGSKVFMYYFDNPGGQIPSW--LINWA--AKNGVPNFLKDMARACQ 208 (214)
T ss_dssp S------------SSSEEEEEEEEECCSSCCCHH--HHHHH--HHTHHHHHHHHHHHHHH
T ss_pred C------------CCceEEEEEEEECCCCcccHH--HHHHH--HHHHhHHHHHHHHHHHH
Confidence 3 1478888887776542 2211 11111 22334456777777654
No 95
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.19 E-value=0.84 Score=46.64 Aligned_cols=182 Identities=23% Similarity=0.326 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCC-CCc-cccChhhhHHHHHHHHHHHHHHhhhccCCCCCCccccccCCCCceEEEE
Q 045292 398 AKRWVATLDRQCERLASSMANNIPAG-DLC-VITSPEGRKSMLKLAERMVTSFCTGVGASTAHAWTTLSATGSDDVRVMT 475 (673)
Q Consensus 398 a~rwla~Lqr~ce~la~~~~~~~p~~-d~~-~i~~~~Gr~sll~La~Rm~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~ 475 (673)
-||.-.|+.|-=-||.-- .|.+. ... ....++-+.+=+.|+.-.+.+...-. ...+|..... .++|+|..
T Consensus 10 ~~r~~~a~ar~~~r~~r~---~~~~~~~~~~p~~~~w~~~~~~~l~~~n~~al~~l~---~~~gW~~~~~--~~gv~Vy~ 81 (258)
T 3fo5_A 10 ERRYREASARKKIRLDRK---YIVSCKQTEVPLSVPWDPSNQVYLSYNNVSSLKMLV---AKDNWVLSSE--ISQVRLYT 81 (258)
T ss_dssp CHHHHHHHHHHHHHHHHH---TCSCCCTTTSCSEEECCGGGHHHHHHHHHHHHHHHH---TCSCCEEEEE--ETTEEEEE
T ss_pred hhhhhhhhhhhhhcccce---EEEEcccCCCCcccccCcccceecccCCHHHHHhhh---ccCCCEEEec--CCCeEEEE
Confidence 356666665544444321 22221 111 12234667777777776666555332 4678987643 46899988
Q ss_pred ccCCCCCCCCCceEEEEEEeecccCChhhHhhhhcccCccchhhhhcCCCccceeeeccCCCCCCceEEEEEeccC---C
Q 045292 476 RKSMDDPGRPPGIVLSAATSFWIPVPPRRIFDFLRDENSRSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSA---N 552 (673)
Q Consensus 476 r~~~~~~g~p~g~vl~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsll~~~~~---~ 552 (673)
+.. + | .++-++..-+++||+.||++|.|...|.+||-.. ...+.+.+|. ..+.|- +.... +
T Consensus 82 ~~~---~----~-~l~~k~~~~v~~~~~~v~~~L~D~~~R~~WD~~~--~~~~vle~id----~~~ivY--~~~~p~~~~ 145 (258)
T 3fo5_A 82 LED---D----K-FLSFHMEMVVHVDAAQAFLLLSDLRQRPEWDKHY--RSVELVQQVD----EDDAIY--HVTSPALGG 145 (258)
T ss_dssp EEC---S----S-CEEEEEEEEESSCHHHHHHHHHCGGGGGGTCTTC--CEEEEEEEEE----TTEEEE--EEEECCCTT
T ss_pred EEC---C----C-ceEEEEEEEEeCCHHHHHHHHhCchhHhHhhhhc--cEEEEEEEcC----CCeEEE--EEecCCccC
Confidence 642 2 2 3566777778999999999999999999999532 1234444442 123332 33221 1
Q ss_pred CCCC-ceeEEeeecc-CCCCc-EEEE-eecchhhhhhhhcCCCCCCC--cccCCccEEcCCC
Q 045292 553 SSQS-NMLVLQESCT-DSTGS-YVIY-APVDIVAMNMVLSGGDPDYV--ALLPSGFAILPDG 608 (673)
Q Consensus 553 ~~~~-~~~iLQes~~-D~sgs-~vVy-APvD~~~~~~vm~G~d~~~v--~lLPSGF~I~Pdg 608 (673)
...+ +..+|.-... +..|. +||. -.|+-+.+- .-+.+| ..+|+||.|-|.|
T Consensus 146 ~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~P-----p~~g~VR~~~~~sg~~I~P~~ 202 (258)
T 3fo5_A 146 HTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHR-----ETPEYRRGETLCSGFCLWREG 202 (258)
T ss_dssp CSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSC-----CCTTSEECCCSSEEEEEEEEE
T ss_pred CCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCC-----CCCCCEEEEEcCcEEEEEECC
Confidence 2223 4444443323 33564 5543 345443211 123333 6899999999943
No 96
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.56 E-value=0.26 Score=40.86 Aligned_cols=42 Identities=24% Similarity=0.393 Sum_probs=37.8
Q ss_pred hhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeeccc
Q 045292 67 QRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 108 (673)
Q Consensus 67 ~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQN 108 (673)
+.-.+.|+.+|+..+.+.......|+.+..|+..|||-||-.
T Consensus 15 p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 15 PPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 334578999999999999999999999999999999999943
No 97
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=83.83 E-value=1.7 Score=37.69 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=40.6
Q ss_pred ceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 045292 357 CLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERL 412 (673)
Q Consensus 357 clIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~l 412 (673)
+-+.+.++| |+|+|..+.+....-+..++.+++..-+.=+.++.++.|.+.+|..
T Consensus 91 ~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~~ 145 (147)
T 2d4r_A 91 WVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERVLAA 145 (147)
T ss_dssp EEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345777888 9999998888764444556666665555567888999998888864
No 98
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=82.30 E-value=0.14 Score=43.87 Aligned_cols=42 Identities=12% Similarity=0.381 Sum_probs=29.5
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecc
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 107 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQ 107 (673)
..||+++....-..+.... .....++|+.+|+++..|..|.+
T Consensus 4 ~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHH
Confidence 4688888766555553320 12356899999999999999974
No 99
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=80.34 E-value=4.8 Score=32.41 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHH
Q 045292 119 RHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEID 179 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~ 179 (673)
+.....+..+.+.|..+|..|...+ .+|+.|+..|++-+.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i---------------------~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERA---------------------DSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 5566778888889999998887654 678888888887653
No 100
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=79.94 E-value=4.1 Score=35.10 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHh
Q 045292 110 RTQMKAQHERHENQILKAENQKLRAENNRYKEA 142 (673)
Q Consensus 110 RaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~ 142 (673)
|++.|++ .....+..+.+.|..||..|+..
T Consensus 29 rSR~krk---~r~~e~~~r~~~Le~EN~~Lr~~ 58 (87)
T 1hjb_A 29 KSRDKAK---MRNLETQHKVLELTAENERLQKK 58 (87)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 33334556666677776665543
No 101
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=79.10 E-value=28 Score=32.28 Aligned_cols=128 Identities=10% Similarity=0.079 Sum_probs=69.4
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCCC
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRPS 345 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~~ 345 (673)
|.++|.+.+|.+.. +++++.+.. + +.+++.+.-. ..++-|.-|+...-++.. +.. .+++. ++
T Consensus 26 D~~~~p~~~P~~~~----~~v~~~~~~----~----~~~~~~~~~~--G~~~~~~s~~~~~~~~~~-i~~-~~~~~--~g 87 (172)
T 3tfz_A 26 DVLGYADIFPPTEK----VEILEEGQG----Y----QVVRLHVDVA--GEINTWTSRRDLDPARRV-IAY-RQLET--AP 87 (172)
T ss_dssp CGGGHHHHCSSEEE----EEEEEEETT----E----EEEEEEEEET--TEEEEEEEEEEEETTTTE-EEE-EEEEC--CT
T ss_pred hHHHHHhhCcccce----EEEEecCCC----E----EEEEEEEecC--CEEEEEEEEEEEeCCCCE-EEE-EEeeC--CC
Confidence 89999999999754 555653321 1 2233332211 223434444444333322 111 12211 11
Q ss_pred CCcceeecCCcc-eEEecCCCceEEEEEEeeeecCccccccchhhhcch---------hhHHHHHHHHHHHHHHHHHHhh
Q 045292 346 PTSKCRRRPSGC-LIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSG---------LAFGAKRWVATLDRQCERLASS 415 (673)
Q Consensus 346 ~~~~~~~~PSGc-lIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg---------~afga~rwla~Lqr~ce~la~~ 415 (673)
+|. .+ .|. -+.+.++|.|+|+|.-++++....+..++.++..-. +.=+.+.-|+.|.+.+|+.+..
T Consensus 88 pf~---~~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~~~~L~~lk~~aE~~~~~ 163 (172)
T 3tfz_A 88 IVG---HM-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNSVADLNAVLGEAERRVRA 163 (172)
T ss_dssp TEE---EE-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chh---hc-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 221 11 122 256677789999999999998877777777654322 2223345778888888876654
No 102
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=77.33 E-value=6.7 Score=31.17 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHH
Q 045292 119 RHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEI 178 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el 178 (673)
......+..+.+.|..+|..|... ...|+.|++.|+..|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~---------------------i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSE---------------------VTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHh
Confidence 445667778888888888887764 367778888777664
No 103
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=76.82 E-value=2.5 Score=35.96 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=17.2
Q ss_pred HHHHHHHHhHhHHHHH----Hhhhhhhh
Q 045292 164 EQHLRIENARLREEID----RISGIAAK 187 (673)
Q Consensus 164 ~~~L~~Ena~Lk~el~----r~~~~~~~ 187 (673)
...|..||.+|++|.. |+.++.+|
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3558899999999986 45554444
No 104
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=75.19 E-value=36 Score=31.95 Aligned_cols=61 Identities=8% Similarity=0.145 Sum_probs=38.7
Q ss_pred cCCcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHHHHhhh
Q 045292 353 RPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERLASSM 416 (673)
Q Consensus 353 ~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~la~~~ 416 (673)
+=...-+.+.++| |+|+|.-+.++++.. + +-.+.+...+.=..+..|+.|++.+|+.+...
T Consensus 91 ~~g~W~f~p~~~g-t~V~~~~df~~~~~~-p-~~~~~~~~av~~~~~~~L~~LK~~aE~~~~~~ 151 (169)
T 3tvq_A 91 MNLHWTYRAVAGG-TEMRWVQEFDMKPGA-P-FDNAHMTAHLNTTTRANMERIKKIIEDRHREG 151 (169)
T ss_dssp EEEEEEEEEETTE-EEEEEEEEEEECTTC-S-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEEECCCC-EEEEEEEEEEecCCC-c-ccHHHHHHHHHhhHHHHHHHHHHHHhhhhhhc
Confidence 3345567888888 999999999997552 1 11112222222223557899999999887653
No 105
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=72.83 E-value=33 Score=31.90 Aligned_cols=124 Identities=11% Similarity=0.131 Sum_probs=64.1
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhc--ccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCC
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQ--VPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLR 343 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~--~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~ 343 (673)
|.++|-+.||.+++ .+|++.+ | . .+.+.|. +-. - -.++-++.|+...- ++..+ +..+ +.
T Consensus 24 Dve~yP~~~p~~~~----~~vl~~~--~----~--~~~~rl~~~~~~-~-G~~~~~ts~~~~d~-~~~~I--~~~~--~~ 84 (159)
T 3tl1_A 24 DIEKWPGLFSEYAS----VEVLGRD--D----D--KVTFRLTMHPDA-D-GKVWSWVSERVADP-VTRTV--RAQR--VE 84 (159)
T ss_dssp CGGGHHHHCSSEEE----EEEEEEC--S----S--EEEEEEEECCCT-T-SCCCEEEEEEEEET-TTTEE--EEEE--SS
T ss_pred hHHHhhhhhhCceE----EEEEecC--C----C--EEEEEEEEEecc-C-ceEEEEEEEEEEcC-CCCEE--EEEE--cc
Confidence 99999999998865 5667643 1 1 1233332 211 1 13454556665433 33232 2221 11
Q ss_pred CCCCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHHHHh
Q 045292 344 PSPTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERLAS 414 (673)
Q Consensus 344 ~~~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~la~ 414 (673)
+++| +.+=...-+.+.++ +|+|+|.-+.++.+.....+ +.+..-+-=..+.-|+.|++.+|+.+.
T Consensus 85 ~gPf---~~l~g~W~f~p~~~-gt~V~~~~df~~~~~~p~~~--~~~~~~~~~~~~~~L~~lK~~~E~~~~ 149 (159)
T 3tl1_A 85 TGPF---QYMNIVWEYAETAE-GTVMRWTQDFAMKPDAPVDD--AWMTDNINRNSRTQMALIRDRIEQAAG 149 (159)
T ss_dssp CTTE---EEEEEEEEEEEETT-EEEEEEEEEEEECTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCh---hhccCEEEEEECCC-CEEEEEEEEEEecCCCCCCH--HHHHHHHHhhHHHHHHHHHHHHhhhhh
Confidence 2233 33434455677877 59999999999976521111 001111111123346777777776654
No 106
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=71.78 E-value=2.8 Score=41.83 Aligned_cols=173 Identities=13% Similarity=0.170 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCccccccCCCCceEEEEccCCCCCCCCCceEE-EEEEeeccc-CChhhHhhhhcccCc
Q 045292 437 MLKLAERMVTSFCTGVGASTAHAWTTLSATGSDDVRVMTRKSMDDPGRPPGIVL-SAATSFWIP-VPPRRIFDFLRDENS 514 (673)
Q Consensus 437 ll~La~Rm~~~F~~~v~~s~~~~W~~l~~~~~~dvrv~~r~~~~~~g~p~g~vl-~A~tS~wLp-v~p~~vf~fLrd~~~ 514 (673)
+-++.+..++.+...+ ..+.+|..... .++|+|..+...+ . |.++ .-++..-++ +||+.||++|.|...
T Consensus 28 ~~~~~~e~l~~~~~~~--~~~~~W~~~~~--~~gv~vy~~~~~~-~----g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~ 98 (255)
T 2e3n_A 28 VEEMVQNHMTYSLQDV--GGDANWQLVVE--EGEMKVYRREVEE-N----GIVLDPLKATHAVKGVTGHEVCNYFWNVDV 98 (255)
T ss_dssp HHHHHHHHHHHTTSCC--TTCTTEEEEEE--ETTEEEEEECCEE-T----TEECCCEEEEEEEETCCHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhhc--CCCCCcEEEEe--CCCEEEEEEEcCC-C----CceeeeEEEEEEEcCCCHHHHHHHHhCcch
Confidence 3334444444443322 23468987643 4679999988632 2 2221 123334445 999999999999999
Q ss_pred cchhhhhcCCCccceeeeccCCCCCCceEEEEEeccCCC-CCCceeEEeeeccC----CCC--c-EEEEeecchhhhhhh
Q 045292 515 RSEWDILSNGGLVQEMAHIANGRDPGNCVSLLRVNSANS-SQSNMLVLQESCTD----STG--S-YVIYAPVDIVAMNMV 586 (673)
Q Consensus 515 R~eWd~l~~g~~vqe~~~ia~g~~~gn~vsll~~~~~~~-~~~~~~iLQes~~D----~sg--s-~vVyAPvD~~~~~~v 586 (673)
|.+||-..- .++.+-.| +.++.|--......-+ ...+..++.....+ +.| . +++.-.++-+.+-
T Consensus 99 r~~Wd~~~~--~~~vle~i----~~~~~i~y~~~~~p~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P-- 170 (255)
T 2e3n_A 99 RNDWETTIE--NFHVVETL----ADNAIIIYQTHKRVWPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAP-- 170 (255)
T ss_dssp HHHHCCSEE--EEEEEEEE----ETTEEEEEEEECCCTTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSC--
T ss_pred Hhhhhhhcc--eeEEEEEc----CCCCEEEEEEeecCCCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCC--
Confidence 999994321 12223333 1122333333332212 23355555544322 333 3 3444456543211
Q ss_pred hcCCCCCCCc-----ccCCccEEcCC-CC-CCCCCCccccCCCCceeEEeeehhcc
Q 045292 587 LSGGDPDYVA-----LLPSGFAILPD-GP-GFNGGGILEVGSGGSLLTVAFQILVD 635 (673)
Q Consensus 587 m~G~d~~~v~-----lLPSGF~I~Pd-g~-~~~~~~~~~~~~~gsllTvaFQ~l~~ 635 (673)
..+.+|- .|.+||.|.|- |. .... ..++|.+|.-.|+=..
T Consensus 171 ---~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~------~~~~t~vt~~~~~Dp~ 217 (255)
T 2e3n_A 171 ---LNNRCVRAKINVAMICQTLVSPPEGNQEISR------DNILCKITYVANVNPG 217 (255)
T ss_dssp ---CCSSSEECEEEEEEEEEEEEC---CCCCCCG------GGEEEEEEEEEEEECS
T ss_pred ---CCCCCEEEEEEeeeeeeeEeccCCCCccccc------CCCcEEEEEEEEeCCC
Confidence 1112221 36789999883 22 1111 1257888888777544
No 107
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.50 E-value=7.3 Score=31.08 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHH
Q 045292 119 RHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEI 178 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el 178 (673)
......|..+.+.|..+|..|... ...|+.|++.|+..|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~---------------------v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAST---------------------ANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
Confidence 344556667777777777776554 355666666666554
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=68.60 E-value=10 Score=32.90 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=42.6
Q ss_pred CCCcccEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhH
Q 045292 96 GLEPLQVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLR 175 (673)
Q Consensus 96 gLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk 175 (673)
||+..+|.-|=|-||+-.-+.-......+-..+...|..++..|.. +.++|+.|+++++
T Consensus 17 gls~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~---------------------e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQ---------------------QVEQLKQEVSRLA 75 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHH
Confidence 7788787777666655433322223333334456667777777654 4578889999999
Q ss_pred HHHHHhhh
Q 045292 176 EEIDRISG 183 (673)
Q Consensus 176 ~el~r~~~ 183 (673)
.|++....
T Consensus 76 ~e~d~~k~ 83 (90)
T 2wt7_B 76 RERDAYKV 83 (90)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876554
No 109
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=68.19 E-value=9.8 Score=32.08 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=8.8
Q ss_pred HHHHHhHHHHHHhHHHH
Q 045292 124 ILKAENQKLRAENNRYK 140 (673)
Q Consensus 124 ~l~~en~~L~~en~~l~ 140 (673)
.+....+.|..||..|+
T Consensus 40 e~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555543
No 110
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=66.94 E-value=2.1 Score=43.52 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=13.2
Q ss_pred hHHHHHHHHhHhHHHHH
Q 045292 163 DEQHLRIENARLREEID 179 (673)
Q Consensus 163 e~~~L~~Ena~Lk~el~ 179 (673)
+.++|+.||++|++.|.
T Consensus 44 ~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 44 EVADLKKENKDLKESLD 60 (255)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 44668889999988766
No 111
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=66.66 E-value=22 Score=31.72 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=67.7
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCCC
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRPS 345 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~~ 345 (673)
|.++|.+.+|.+.. ++|++.+..|. |. -+.+++.+- .-+.++-|..|++..-.+ ..|.-.++++
T Consensus 23 D~~~~p~~~p~~~~----~~v~~~~~~~g--~~--~~~~~~~~~--~~~~~~~~~~~v~~~~~~--~~i~~~~~~G---- 86 (148)
T 1t17_A 23 DVDAYPKFVPWITG----MRTWNGRVDGA--VS--TVDAEAQVG--FSFLREKFATRVRRDKDA--RSIDVSLLYG---- 86 (148)
T ss_dssp TTTCCSSCCSSCCC----CCEEEEEEETT--EE--EEEEEEECS--TTSSCCEEEEEEEEETTT--CEEEEEESST----
T ss_pred HHhhHHhhCCCcCe----eEEEEecCCCC--Cc--eEEEEEEEE--ecceeEEEEEEEEEcCCC--cEEEEEECCC----
Confidence 88999999999855 45665433221 11 134444442 235566677788764333 2233334443
Q ss_pred CCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHHHHHHHHH
Q 045292 346 PTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATLDRQCERL 412 (673)
Q Consensus 346 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~Lqr~ce~l 412 (673)
+|- .+=.-.-+++.++| |+|++.-+++... .++..+...-+.-.+++-+.++.+.++.+
T Consensus 87 ~f~---~~~g~w~f~~~~~g-t~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~f~~r~~~~ 145 (148)
T 1t17_A 87 PFK---RLNNGWRFMPEGDA-TRVEFVIEFAFKS----ALLDAMLAANVDRAAGKLIACFEARAQQL 145 (148)
T ss_dssp TSS---CEEEEEEEEEETTE-EEEEEEEEECCSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chh---ccEEEEEEEECCCC-eEEEEEEEEEECc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 11112234677788 9999998888752 23344443333445677777776666543
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=65.72 E-value=18 Score=28.84 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHh
Q 045292 119 RHENQILKAENQKLRAENNRYKEA 142 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~ 142 (673)
......|..+.+.|..+|..|+..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~e 45 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTE 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777654
No 113
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.46 E-value=30 Score=26.90 Aligned_cols=38 Identities=37% Similarity=0.498 Sum_probs=28.1
Q ss_pred HHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhh
Q 045292 124 ILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRIS 182 (673)
Q Consensus 124 ~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~ 182 (673)
.++.+++.|.+.|..|.+.+ ++-+.|...|++|++++.
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L---------------------~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETL---------------------KEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHhh
Confidence 46666777777777777664 567788889999988764
No 114
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=57.30 E-value=11 Score=32.97 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHH
Q 045292 118 ERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEID 179 (673)
Q Consensus 118 ~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~ 179 (673)
.-+++-.|...++.+.+||.+++...... | +-..++..+.++|+.||.+|+.|-.
T Consensus 35 LIqEYl~LE~~~s~le~e~~rlr~~~~~~----~---~~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRLRLESKRL----D---ARVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc----h---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776652111 0 1113455677788888888887754
No 115
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=55.08 E-value=10 Score=33.20 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=8.5
Q ss_pred CCCCCCCCCCC
Q 045292 145 NATCPNCGGPA 155 (673)
Q Consensus 145 ~~~C~~Cggp~ 155 (673)
...||.||.+.
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 45799999764
No 116
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=53.51 E-value=27 Score=28.78 Aligned_cols=17 Identities=12% Similarity=0.147 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHhHH
Q 045292 122 NQILKAENQKLRAENNR 138 (673)
Q Consensus 122 ~~~l~~en~~L~~en~~ 138 (673)
...|......|..++..
T Consensus 31 i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 31 LKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 117
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=50.42 E-value=8.3 Score=36.11 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=28.0
Q ss_pred EEEEEeecccCChhhHhhhhcccCccchhhh
Q 045292 490 LSAATSFWIPVPPRRIFDFLRDENSRSEWDI 520 (673)
Q Consensus 490 l~A~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 520 (673)
.+...|+-+..||+.||+|++|...-.+|..
T Consensus 27 ~~~~~si~I~ap~eeVy~~~~D~e~lP~W~~ 57 (156)
T 2qpv_A 27 QSRIIHLSVEKPWAEVYDFAANPGNMPRWAA 57 (156)
T ss_dssp CEEEEEEEESSCHHHHHHHHHCGGGGGGTCG
T ss_pred cceEEEEEEcCCHHHHHHHHHChhhHHHHHH
Confidence 3568899999999999999999999999984
No 118
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=43.67 E-value=13 Score=24.64 Aligned_cols=17 Identities=41% Similarity=0.724 Sum_probs=14.2
Q ss_pred HHHHHHHhHhHHHHHHh
Q 045292 165 QHLRIENARLREEIDRI 181 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~r~ 181 (673)
++|+..|++||+|+.-+
T Consensus 3 rrlkqknarlkqeiaal 19 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAAL 19 (28)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHH
Confidence 47899999999998754
No 119
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=42.26 E-value=12 Score=32.89 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=35.2
Q ss_pred cccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchh
Q 045292 61 RYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRT 111 (673)
Q Consensus 61 ~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRa 111 (673)
+|.+||.++...+-..+.....+. ..++|+.+|++...|..|..+++.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 456799999888777775554433 337899999999999988755443
No 120
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=42.09 E-value=3.1 Score=37.20 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCCcccEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhH
Q 045292 96 GLEPLQVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLR 175 (673)
Q Consensus 96 gLs~rQVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk 175 (673)
||++.++.-.=|-||.-.-|.-.+....+-..+.+.|..++.. +..+.++|..||+.|+
T Consensus 27 ~Ls~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~---------------------L~~e~e~L~~En~~l~ 85 (107)
T 3a5t_A 27 GLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAE---------------------LQQEVEKLASENASMK 85 (107)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---------------------TSSTTTTTTSTTSHHH
T ss_pred CCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
Confidence 6666666555444443322222222223333445555555443 4456677778888888
Q ss_pred HHHHHhhh
Q 045292 176 EEIDRISG 183 (673)
Q Consensus 176 ~el~r~~~ 183 (673)
.|++++..
T Consensus 86 ~E~~~lk~ 93 (107)
T 3a5t_A 86 LELDALRS 93 (107)
T ss_dssp HTTTSSSS
T ss_pred HHHHHHHH
Confidence 88775543
No 121
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.27 E-value=42 Score=26.93 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=7.6
Q ss_pred HHHHHHhHhHHHHHHhh
Q 045292 166 HLRIENARLREEIDRIS 182 (673)
Q Consensus 166 ~L~~Ena~Lk~el~r~~ 182 (673)
+|..||..|+.|+.++.
T Consensus 41 ~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 41 ELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 122
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=41.19 E-value=11 Score=29.04 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=31.0
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecc
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQ 107 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQ 107 (673)
..||++........+... .+......++|+++|+++.+|..|.+
T Consensus 4 ~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 4 RIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 368888877775555443 22122356899999999999999964
No 123
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=40.21 E-value=2.1e+02 Score=25.87 Aligned_cols=118 Identities=13% Similarity=0.109 Sum_probs=63.9
Q ss_pred chhhhhcccccceeeeeEeEEeecccCCCCCCceeeeehhhcccCCCccCceeEEEEeeeecCCCeEEEEEEecCCCCCC
Q 045292 266 DQNQWSSVFCGIVSRAMTIEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQHSDGTWAVVDVSLDNLRPS 345 (673)
Q Consensus 266 D~~~w~~~Fp~ivarA~t~~vis~g~~g~~~G~lqlm~ael~~~SpLvp~Re~~fLRyck~~~~g~w~VvDvSld~~~~~ 345 (673)
|.++|...||..+.- + ..+ +|....+.+++.+-. ...|+-|..||...-++. -+..+ .++ +
T Consensus 28 Dve~w~~~yp~~~p~----~--~~~-----~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~~~-~I~~~-~~~----g 88 (161)
T 3p9v_A 28 DVPKSASHFPKVDKL----V--DLG-----NNAYRWEMEKVGVDK--HAIQSVYACTYHADKEAG-KITWS-PIK----G 88 (161)
T ss_dssp CHHHHHTTSTTEEEE----E--EEE-----TTEEEEEECCBSSGG--GCBCCEEEEEEEEETTTT-EEEEE-ECT----T
T ss_pred ChhhhHhhCCCeEEE----E--EcC-----CCceEEEEEEEeeee--EEEEEEEEEEEEEcCCCC-EEEEE-Eec----C
Confidence 889999999987653 1 111 233344445554432 234888999998664333 22221 222 2
Q ss_pred CCcceeecCCcceEEecCCCceEEEEEEeeeecCccccccchhhhcchhhHHHHHHHHHH
Q 045292 346 PTSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRSVHNIYKPLVNSGLAFGAKRWVATL 405 (673)
Q Consensus 346 ~~~~~~~~PSGclIq~~~nG~skVtwVeH~e~d~~~v~~l~rpl~~sg~afga~rwla~L 405 (673)
++. +.+-.-.-+.+.++|.|+|+|.-+.|.. ..++.++..+...-+--.+++-+.+.
T Consensus 89 ~~~--~~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~af 145 (161)
T 3p9v_A 89 EGN--GVVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDTY 145 (161)
T ss_dssp STT--EEEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred ccc--eeEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 1111234457788888999999888886 12334444333222233345555555
No 124
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=39.60 E-value=9.9 Score=32.65 Aligned_cols=28 Identities=21% Similarity=0.540 Sum_probs=24.8
Q ss_pred EEEeecccCChhhHhhhhcccCccchhh
Q 045292 492 AATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 492 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
...+..++.||+.||++|.|..+..+|.
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~~~~w~ 31 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEGLKPYL 31 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHHHGGGC
T ss_pred EEEEEEeCCCHHHHHHHHhChhhhhhhc
Confidence 3467788999999999999999999996
No 125
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=39.16 E-value=39 Score=26.28 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=9.4
Q ss_pred hhHHHHHHHHhHhHHHHHH
Q 045292 162 FDEQHLRIENARLREEIDR 180 (673)
Q Consensus 162 ~e~~~L~~Ena~Lk~el~r 180 (673)
.+...|+.||+.||.++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 126
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=39.07 E-value=62 Score=27.56 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=14.9
Q ss_pred HHHHHHHhHhHHHHHHhhhhhh
Q 045292 165 QHLRIENARLREEIDRISGIAA 186 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~r~~~~~~ 186 (673)
.+|..|++.||+|++.+..++.
T Consensus 56 e~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 56 EQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777666543
No 127
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.19 E-value=61 Score=26.66 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=6.5
Q ss_pred HHHHHhHHHHHHhHHH
Q 045292 124 ILKAENQKLRAENNRY 139 (673)
Q Consensus 124 ~l~~en~~L~~en~~l 139 (673)
.+...++.+..||..|
T Consensus 40 ~le~~~~~l~~en~~L 55 (70)
T 1gd2_E 40 TLKELHSSTTLENDQL 55 (70)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444433
No 128
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=37.00 E-value=36 Score=34.66 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=16.0
Q ss_pred HHHHHHHhHhHHHHHHhhh
Q 045292 165 QHLRIENARLREEIDRISG 183 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~r~~~ 183 (673)
++++.|..+||+|++++..
T Consensus 78 k~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 78 KEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 6688899999999998765
No 129
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=36.42 E-value=13 Score=30.97 Aligned_cols=43 Identities=12% Similarity=0.295 Sum_probs=30.6
Q ss_pred cccccccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeec
Q 045292 59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWF 106 (673)
Q Consensus 59 rR~RtrfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWF 106 (673)
|+.+..|+.++....-..+... ....++|+++|+++..|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-----~s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-----ESKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-----CCHHHHHHHHCcCHHHHHHHH
Confidence 3445678998866555556432 135588999999999998885
No 130
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.88 E-value=62 Score=27.71 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhHhHHHHHHhhhhhh
Q 045292 162 FDEQHLRIENARLREEIDRISGIAA 186 (673)
Q Consensus 162 ~e~~~L~~Ena~Lk~el~r~~~~~~ 186 (673)
.+..+|+.+...|+.|+..+..+..
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666555443
No 131
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.85 E-value=44 Score=24.11 Aligned_cols=11 Identities=36% Similarity=0.480 Sum_probs=5.7
Q ss_pred HHHHHHHhHhH
Q 045292 165 QHLRIENARLR 175 (673)
Q Consensus 165 ~~L~~Ena~Lk 175 (673)
.+|+.||..|+
T Consensus 24 a~Lk~eN~eL~ 34 (37)
T 1t6f_A 24 ARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhHHHH
Confidence 34555555544
No 132
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=34.52 E-value=13 Score=33.21 Aligned_cols=29 Identities=28% Similarity=0.362 Sum_probs=26.1
Q ss_pred EEEEeecccCChhhHhhhhcccCccchhh
Q 045292 491 SAATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 491 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
....+..+|.||++||++|.|..+..+|-
T Consensus 14 ~i~~~~~i~ap~e~Vw~~l~D~~~~~~w~ 42 (157)
T 2ns9_A 14 RYEGSFEVSKTPEEVFEFLTDPKRFSRAF 42 (157)
T ss_dssp EEEEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEeeEEEEcCCHHHHHHHHcCHHHHHhhC
Confidence 45677888999999999999999999996
No 133
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=34.30 E-value=19 Score=32.23 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=25.2
Q ss_pred EEeecccCChhhHhhhhcccCccchhhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWDI 520 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd~ 520 (673)
..|..+|.||+.||+++.|-.+..+|--
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p 32 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVP 32 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCS
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCC
Confidence 4678889999999999999999999973
No 134
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=34.20 E-value=11 Score=34.10 Aligned_cols=28 Identities=14% Similarity=0.025 Sum_probs=25.1
Q ss_pred EEEeecccCChhhHhhhhcccCccchhh
Q 045292 492 AATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 492 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
...++.+|.||++||++|.|..+..+|-
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~~~~w~ 32 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSILSKCI 32 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHHHHHHS
T ss_pred EeeEEEecCCHHHHHHHhcCHHHHHhhC
Confidence 3467888999999999999999999996
No 135
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.09 E-value=30 Score=26.75 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhHHHHHHhhhhhhhc
Q 045292 163 DEQHLRIENARLREEIDRISGIAAKY 188 (673)
Q Consensus 163 e~~~L~~Ena~Lk~el~r~~~~~~~~ 188 (673)
+.+-|+.||..||+||+.-+...+|.
T Consensus 11 QVe~Lk~ENshLrrEL~dNS~~lskL 36 (54)
T 1deb_A 11 QVEALKMENSNLRQELEDNSNHLTKL 36 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHhhHHHHHHH
No 136
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=33.61 E-value=17 Score=33.06 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=26.1
Q ss_pred EEEEeecccCChhhHhhhhcccCccchhh
Q 045292 491 SAATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 491 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
....|+.++.||+.||+|+.|..+-.+|-
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~~p~w~ 33 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPGLPLLM 33 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHS
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHHhHHHh
Confidence 34678889999999999999999999997
No 137
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=31.96 E-value=23 Score=30.80 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=25.0
Q ss_pred EEEEeecccCChhhHhhhhcccCccchh
Q 045292 491 SAATSFWIPVPPRRIFDFLRDENSRSEW 518 (673)
Q Consensus 491 ~A~tS~wLpv~p~~vf~fLrd~~~R~eW 518 (673)
....+..++.||++||++|-|..+..+|
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~~~~W 33 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEIIKEY 33 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTHHHHH
T ss_pred eEEEEEEECCCHHHHHHHHcCHHHhcee
Confidence 3456778899999999999999999999
No 138
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=31.67 E-value=24 Score=30.98 Aligned_cols=27 Identities=19% Similarity=0.307 Sum_probs=24.3
Q ss_pred EEeecccCChhhHhhhhcccCccchhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
..+..++.||++||+.|-|+.+..+|-
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W~ 30 (135)
T 3q6a_A 4 ITKMQVDVPRETVFEAFVDPEKIGGFW 30 (135)
T ss_dssp EEEEEESSCHHHHHHHHHCTTTGGGTS
T ss_pred EEEEEeCCCHHHHHHHHcCHHHhcccC
Confidence 457788999999999999999999994
No 139
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=30.41 E-value=1.3e+02 Score=26.44 Aligned_cols=69 Identities=20% Similarity=0.274 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCC----CCC---CCCChhHHHHHHHHhHhHHHHHHhhhhhhh
Q 045292 119 RHENQILKAENQKLRAENNRYKEALGNATCPNCGGP----AAL---GEMSFDEQHLRIENARLREEIDRISGIAAK 187 (673)
Q Consensus 119 r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp----~~~---~~~~~e~~~L~~Ena~Lk~el~r~~~~~~~ 187 (673)
+.+...|+.|+++|+.++..|.-.+....-.....| ..| ....-..++.+.+...|+.|++++.....+
T Consensus 18 r~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 18 RLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666555444433211112222 111 111223345667777777777777664443
No 140
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=30.32 E-value=86 Score=26.27 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=8.9
Q ss_pred HHHHHHHHhHhHHHHHHhhh
Q 045292 164 EQHLRIENARLREEIDRISG 183 (673)
Q Consensus 164 ~~~L~~Ena~Lk~el~r~~~ 183 (673)
..+|+.+...|+.|+..+..
T Consensus 52 N~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 52 NERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 141
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=29.44 E-value=1.1e+02 Score=26.10 Aligned_cols=14 Identities=43% Similarity=0.430 Sum_probs=6.6
Q ss_pred HHHHHHHhHhHHHH
Q 045292 165 QHLRIENARLREEI 178 (673)
Q Consensus 165 ~~L~~Ena~Lk~el 178 (673)
..|+.||..|+.=.
T Consensus 55 ~~Lk~en~~L~elA 68 (83)
T 1wlq_A 55 ARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555554433
No 142
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=28.70 E-value=16 Score=26.17 Aligned_cols=42 Identities=10% Similarity=0.252 Sum_probs=29.7
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccch
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKR 110 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRR 110 (673)
.+++++...+...+... ....++|+.+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35666666665556543 2356899999999999999986544
No 143
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.24 E-value=1.7e+02 Score=21.84 Aligned_cols=22 Identities=45% Similarity=0.543 Sum_probs=14.3
Q ss_pred hHHHHHHHHhHhHHHHHHhhhh
Q 045292 163 DEQHLRIENARLREEIDRISGI 184 (673)
Q Consensus 163 e~~~L~~Ena~Lk~el~r~~~~ 184 (673)
++|.|..-.+.|++|+.|+...
T Consensus 25 deqnlekiianlrdeiarlene 46 (52)
T 3he5_B 25 DEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777776553
No 144
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=27.85 E-value=51 Score=23.36 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=19.2
Q ss_pred hHHHHHHHHhHhHHHHHHhhhhhh
Q 045292 163 DEQHLRIENARLREEIDRISGIAA 186 (673)
Q Consensus 163 e~~~L~~Ena~Lk~el~r~~~~~~ 186 (673)
..+.|..+|..|++|+.|+..+..
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhh
Confidence 456788999999999999887543
No 145
>1x53_A Activator of 90 kDa heat shock protein ATPase homolog 1; AHA1, HSP90,DUF704, C-terminal domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.129.3.5
Probab=27.43 E-value=25 Score=31.34 Aligned_cols=28 Identities=4% Similarity=0.127 Sum_probs=24.3
Q ss_pred EEEeecccCChhhHhhhhcccCccchhh
Q 045292 492 AATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 492 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
-..+.-++.||++||+.|-|+.+..+|-
T Consensus 13 i~~~~~i~ap~e~Vw~altdp~~~~~W~ 40 (145)
T 1x53_A 13 ITLKETFLTSPEELYRVFTTQELVQAFT 40 (145)
T ss_dssp EEEEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHHHhc
Confidence 3456677999999999999999999994
No 146
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=26.40 E-value=1.1e+02 Score=25.67 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 045292 108 NKRTQMKAQHERHENQILKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 108 NRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~ 143 (673)
+||.+.+-.+...+-..++.-.+.|+.-...|.+.+
T Consensus 13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi 48 (78)
T 3iv1_A 13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMV 48 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 467777777777777778887777877777776665
No 147
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=26.06 E-value=30 Score=32.07 Aligned_cols=29 Identities=10% Similarity=0.179 Sum_probs=26.3
Q ss_pred EEEEeecccCChhhHhhhhcccCccchhh
Q 045292 491 SAATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 491 ~A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
....|+.++.||+.||+++.|-....+|-
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~~p~~~ 34 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLGYADIF 34 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGGHHHHC
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHHHHhhC
Confidence 45678899999999999999999999996
No 148
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=25.72 E-value=33 Score=28.47 Aligned_cols=47 Identities=9% Similarity=0.133 Sum_probs=32.9
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHH
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKA 115 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr 115 (673)
.+++.+...|...|-.. ..-.++|+.+|++...|+.+...=|.+.|+
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 57788888887765443 245689999999999998776544444443
No 149
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=25.19 E-value=2.9e+02 Score=23.45 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=14.9
Q ss_pred HHHHHHHhHhHHHHHHhhhhhh
Q 045292 165 QHLRIENARLREEIDRISGIAA 186 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~r~~~~~~ 186 (673)
.++..|.+.||+|..++..+|.
T Consensus 48 e~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 48 EQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777766554
No 150
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=25.13 E-value=3.2 Score=39.02 Aligned_cols=31 Identities=3% Similarity=-0.118 Sum_probs=22.1
Q ss_pred CCCcccccccChhHHHHHHHhHhcCCCCChH
Q 045292 56 HPKRKRYHRHTQRQIQEMEAFFKECPHPDDK 86 (673)
Q Consensus 56 ~kkrR~RtrfT~~Ql~~LE~~F~~~~~Ps~~ 86 (673)
++.||.|+.|+..|++.|++.|+.+++|...
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~~ 164 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQS 164 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCcccc
Confidence 4457788899999999999999999998753
No 151
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.68 E-value=41 Score=40.96 Aligned_cols=61 Identities=16% Similarity=0.142 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhh
Q 045292 113 MKAQHERHENQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 113 ~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~ 183 (673)
.+.+..+++...++.+++++..|++.+.+...... .+++.....|..||+.|+++++.+..
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~----------~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK----------HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666655541111 12334555788899999988887774
No 152
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=24.03 E-value=41 Score=30.01 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=24.5
Q ss_pred EEEeecccCChhhHhhhhcccCccchhh
Q 045292 492 AATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 492 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
...++-++.||.+||++|.|-.+..+|.
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~~~~w~ 31 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSAIHRWH 31 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGGGGGTC
T ss_pred EEEEEEecCCHHHHHHHHhCcCcHHHhc
Confidence 3567888999999999999988888996
No 153
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.84 E-value=1.2e+02 Score=27.85 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=10.6
Q ss_pred hHHHHHHHHhHhHHHHHHhh
Q 045292 163 DEQHLRIENARLREEIDRIS 182 (673)
Q Consensus 163 e~~~L~~Ena~Lk~el~r~~ 182 (673)
+...|+.++..|+.++.++.
T Consensus 111 e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 111 EIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554
No 154
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.84 E-value=32 Score=23.97 Aligned_cols=40 Identities=8% Similarity=0.173 Sum_probs=28.3
Q ss_pred ccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeeccc
Q 045292 64 RHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQN 108 (673)
Q Consensus 64 rfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQN 108 (673)
.+++++...+...+... . ...++|+.+|++...|..|.+.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777765555555433 1 3568999999999999888753
No 155
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.68 E-value=2.3e+02 Score=23.84 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=12.8
Q ss_pred HHHHHHHhHhHHHHHHhhhh
Q 045292 165 QHLRIENARLREEIDRISGI 184 (673)
Q Consensus 165 ~~L~~Ena~Lk~el~r~~~~ 184 (673)
..|+.||..|++-++.+..+
T Consensus 51 ~~LkeEN~~L~el~~~~~~l 70 (79)
T 2zxx_A 51 ARLRKENKDLAEVAEHVQYM 70 (79)
T ss_dssp HHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777777777666655443
No 156
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=22.98 E-value=27 Score=30.89 Aligned_cols=27 Identities=4% Similarity=0.255 Sum_probs=24.3
Q ss_pred EEeecccCChhhHhhhhcccCccchhh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
..+..++.||++||+.|-|..+..+|-
T Consensus 11 ~~~~~i~ap~e~Vw~~ltd~~~~~~W~ 37 (143)
T 1xn6_A 11 KQTIVFNASIQKVWSVVSTAEGIASWF 37 (143)
T ss_dssp EEEEEESSCHHHHHHTTSCSHHHHTTS
T ss_pred EEEEEEcCCHHHHHHHHhCHhHHHHhc
Confidence 466778999999999999999999996
No 157
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=22.71 E-value=92 Score=28.12 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=19.5
Q ss_pred cEEeecccchhHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 045292 101 QVKFWFQNKRTQMKAQHERHENQILKAENQKLRAENNRYKEAL 143 (673)
Q Consensus 101 QVkvWFQNRRaK~Kr~~~r~e~~~l~~en~~L~~en~~l~e~~ 143 (673)
+.+-|-+|+-...-+....++..+-+...++|+.|...|.+.+
T Consensus 45 eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~L 87 (121)
T 3mq7_A 45 EAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKL 87 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455553333333333333333444555666666555543
No 158
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.19 E-value=1.5e+02 Score=26.56 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=23.3
Q ss_pred HHHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHH
Q 045292 122 NQILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQH 166 (673)
Q Consensus 122 ~~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~ 166 (673)
...|.++..+|+-||+.|+..++.. ..|+.. .+.+++...+
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~~--g~~~p~--d~~LTp~qKe 50 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKSS--GAVSSD--DSILTAAKRE 50 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-------------CCBCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCC--CccCCHHHHH
Confidence 3467888999999999999998653 444322 2334544443
No 159
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.01 E-value=76 Score=27.86 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=37.4
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHH
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQ 116 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~ 116 (673)
..+++.|...+...|... ..-.++|..+|+++..|+.|.+.=|.+.|+.
T Consensus 21 ~~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GGSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 358888998888876544 2356899999999999999887666665553
No 160
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=21.97 E-value=28 Score=31.43 Aligned_cols=28 Identities=11% Similarity=0.372 Sum_probs=24.6
Q ss_pred EEEeecccCChhhHhhhhcccCccchhh
Q 045292 492 AATSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 492 A~tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
...+..++.||++||++|-|..+..+|-
T Consensus 12 i~~~~~i~Ap~e~Vw~altd~~~~~~W~ 39 (152)
T 2kew_A 12 ITKSITLEAPIQKVWETVSTSEGIAKWF 39 (152)
T ss_dssp EEEEEEECSCHHHHHHHSSSSHHHHHHH
T ss_pred EEEEEEECCCHHHHHHHHhCHHHHHHhc
Confidence 3467778999999999999999999994
No 161
>1z94_A Conserved hypothetical protein; NESG, CV1439, structural genomics, PSI structure initiative; 2.10A {Chromobacterium violaceum} SCOP: d.129.3.5
Probab=21.78 E-value=26 Score=30.66 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=23.1
Q ss_pred EeecccCChhhHhhhhcccCccchhh
Q 045292 494 TSFWIPVPPRRIFDFLRDENSRSEWD 519 (673)
Q Consensus 494 tS~wLpv~p~~vf~fLrd~~~R~eWd 519 (673)
.+..++.||++||++|-|..+..+|-
T Consensus 7 ~~~~i~ap~e~Vw~altd~~~~~~W~ 32 (147)
T 1z94_A 7 LHRVLSAPPERVYRAFLDPLALAKWL 32 (147)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHS
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhhcc
Confidence 45577999999999999999999994
No 162
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.41 E-value=1.6e+02 Score=32.42 Aligned_cols=21 Identities=19% Similarity=0.419 Sum_probs=14.1
Q ss_pred hHHHHHHHHhHhHHHHHHhhh
Q 045292 163 DEQHLRIENARLREEIDRISG 183 (673)
Q Consensus 163 e~~~L~~Ena~Lk~el~r~~~ 183 (673)
..++|+.|++.+++|+..+-.
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777776554
No 163
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=21.38 E-value=79 Score=27.61 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=36.9
Q ss_pred cccChhHHHHHHHhHhcCCCCChHHHHHHHHHhCCCcccEEeecccchhHHHHHH
Q 045292 63 HRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKAQH 117 (673)
Q Consensus 63 trfT~~Ql~~LE~~F~~~~~Ps~~~r~~LA~~LgLs~rQVkvWFQNRRaK~Kr~~ 117 (673)
..+++.+...+...|-.. ..-.++|..+|+++..|+.+...=|.+.|+..
T Consensus 24 ~~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp GGSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 357888888888776544 23568999999999999988776666655543
No 164
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}
Probab=20.46 E-value=28 Score=30.80 Aligned_cols=26 Identities=8% Similarity=0.316 Sum_probs=23.5
Q ss_pred EEeecccCChhhHhhhhcccCccchh
Q 045292 493 ATSFWIPVPPRRIFDFLRDENSRSEW 518 (673)
Q Consensus 493 ~tS~wLpv~p~~vf~fLrd~~~R~eW 518 (673)
..+..++.||++||++|-|+.+..+|
T Consensus 4 ~~~~~i~ap~e~Vw~altd~~~~~~W 29 (142)
T 2lcg_A 4 TVETTVAAPVGKVWRAYTTPEDIKQW 29 (142)
T ss_dssp EEEEEESSCHHHHHHHTTCHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHhCCHHHHhcC
Confidence 45677899999999999999999999
No 165
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.05 E-value=1.6e+02 Score=28.96 Aligned_cols=42 Identities=19% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHhHHHHHhhCCCCCCCCCCCCCCCCCChhHHHHHHHHhHhHHHHHHhhhhh
Q 045292 123 QILKAENQKLRAENNRYKEALGNATCPNCGGPAALGEMSFDEQHLRIENARLREEIDRISGIA 185 (673)
Q Consensus 123 ~~l~~en~~L~~en~~l~e~~~~~~C~~Cggp~~~~~~~~e~~~L~~Ena~Lk~el~r~~~~~ 185 (673)
...+.-+.....||..|.+.+ .+|..|++.||+|++.+..++
T Consensus 104 E~RR~AL~eaLeEN~~Lh~~i---------------------e~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 104 EKRRKALYEALKENEKLHKEI---------------------EQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHH
Done!