Query 045293
Match_columns 89
No_of_seqs 126 out of 1352
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 11:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.6 2.2E-14 4.7E-19 83.7 8.5 70 11-81 87-156 (160)
2 PF13499 EF-hand_7: EF-hand do 99.6 2.9E-14 6.2E-19 72.2 7.2 62 17-79 1-66 (66)
3 cd05027 S-100B S-100B: S-100B 99.5 1.7E-13 3.7E-18 73.2 8.8 67 16-83 8-81 (88)
4 cd05022 S-100A13 S-100A13: S-1 99.5 3E-13 6.6E-18 72.3 7.9 69 16-84 8-78 (89)
5 KOG0027 Calmodulin and related 99.5 4.3E-13 9.4E-18 77.9 8.4 67 14-81 83-149 (151)
6 cd05025 S-100A1 S-100A1: S-100 99.5 1.3E-12 2.7E-17 70.3 8.6 69 15-84 8-83 (92)
7 smart00027 EH Eps15 homology d 99.4 2.4E-12 5.3E-17 69.7 8.6 69 15-86 9-77 (96)
8 cd05026 S-100Z S-100Z: S-100Z 99.4 3E-12 6.5E-17 69.0 8.8 67 16-83 10-83 (93)
9 cd05029 S-100A6 S-100A6: S-100 99.4 4.3E-12 9.3E-17 67.8 8.8 68 17-84 11-82 (88)
10 cd05031 S-100A10_like S-100A10 99.4 5E-12 1.1E-16 68.2 8.5 67 15-82 7-80 (94)
11 KOG0027 Calmodulin and related 99.4 5.7E-12 1.2E-16 73.2 8.6 68 15-83 7-74 (151)
12 cd00052 EH Eps15 homology doma 99.4 7.4E-12 1.6E-16 63.2 8.0 62 19-83 2-63 (67)
13 PF13833 EF-hand_8: EF-hand do 99.3 8.1E-12 1.8E-16 60.8 6.4 52 30-81 1-53 (54)
14 cd05023 S-100A11 S-100A11: S-1 99.3 5.2E-11 1.1E-15 63.7 8.7 67 16-83 9-82 (89)
15 cd00051 EFh EF-hand, calcium b 99.3 4.7E-11 1E-15 58.5 7.4 61 18-79 2-62 (63)
16 PTZ00183 centrin; Provisional 99.3 6.2E-11 1.3E-15 68.6 8.9 68 13-81 87-154 (158)
17 PF14658 EF-hand_9: EF-hand do 99.3 4.1E-11 8.8E-16 60.3 6.8 61 21-82 3-65 (66)
18 KOG0028 Ca2+-binding protein ( 99.3 4.7E-11 1E-15 69.3 7.6 71 11-82 101-171 (172)
19 cd00213 S-100 S-100: S-100 dom 99.3 9.5E-11 2.1E-15 62.4 8.1 69 16-84 8-82 (88)
20 COG5126 FRQ1 Ca2+-binding prot 99.2 1.1E-10 2.3E-15 68.3 8.6 67 16-84 20-86 (160)
21 PTZ00184 calmodulin; Provision 99.2 1.4E-10 2.9E-15 66.4 8.7 67 13-80 81-147 (149)
22 cd00252 SPARC_EC SPARC_EC; ext 99.2 1.2E-10 2.5E-15 65.1 8.0 61 14-79 46-106 (116)
23 KOG0037 Ca2+-binding protein, 99.2 1.8E-10 4E-15 69.7 8.3 66 16-82 124-189 (221)
24 KOG0031 Myosin regulatory ligh 99.2 2.9E-10 6.3E-15 65.7 8.1 70 11-81 96-165 (171)
25 PTZ00183 centrin; Provisional 99.2 6.8E-10 1.5E-14 64.2 9.3 68 14-82 15-82 (158)
26 cd05030 calgranulins Calgranul 99.2 4.4E-10 9.6E-15 60.0 7.7 68 16-84 8-82 (88)
27 PTZ00184 calmodulin; Provision 99.1 8.3E-10 1.8E-14 63.1 9.0 67 15-82 10-76 (149)
28 KOG0030 Myosin essential light 99.1 5.5E-10 1.2E-14 63.5 7.7 73 12-85 7-81 (152)
29 KOG0034 Ca2+/calmodulin-depend 99.1 6.5E-10 1.4E-14 66.7 8.4 68 13-81 101-175 (187)
30 KOG0030 Myosin essential light 99.1 2.1E-10 4.6E-15 65.2 4.7 68 10-79 82-149 (152)
31 KOG0028 Ca2+-binding protein ( 99.0 3.2E-09 6.9E-14 61.8 8.1 67 16-83 33-99 (172)
32 KOG0037 Ca2+-binding protein, 99.0 3E-09 6.5E-14 64.5 8.0 72 14-86 55-127 (221)
33 KOG0041 Predicted Ca2+-binding 99.0 3.4E-09 7.3E-14 63.8 7.1 78 10-88 90-170 (244)
34 KOG0044 Ca2+ sensor (EF-Hand s 98.9 1.3E-08 2.7E-13 61.4 7.8 72 12-84 60-131 (193)
35 cd05024 S-100A10 S-100A10: A s 98.9 4.7E-08 1E-12 52.3 9.0 66 16-83 8-78 (91)
36 PLN02964 phosphatidylserine de 98.9 2.6E-08 5.6E-13 69.1 9.0 70 12-82 172-244 (644)
37 PF12763 EF-hand_4: Cytoskelet 98.8 6.3E-08 1.4E-12 53.2 7.8 66 14-83 8-73 (104)
38 PF00036 EF-hand_1: EF hand; 98.7 5.4E-08 1.2E-12 41.6 3.7 26 55-80 2-27 (29)
39 PF00036 EF-hand_1: EF hand; 98.7 5.1E-08 1.1E-12 41.7 3.6 27 17-44 1-27 (29)
40 PF14788 EF-hand_10: EF hand; 98.7 2.2E-07 4.7E-12 44.5 5.9 49 34-82 2-50 (51)
41 KOG0036 Predicted mitochondria 98.6 2.2E-07 4.8E-12 61.2 7.1 68 12-80 78-145 (463)
42 PF13405 EF-hand_6: EF-hand do 98.6 1.4E-07 3.1E-12 40.8 3.8 30 17-47 1-31 (31)
43 PLN02964 phosphatidylserine de 98.6 4.7E-07 1E-11 62.9 8.1 62 16-82 143-208 (644)
44 KOG0031 Myosin regulatory ligh 98.6 6.9E-07 1.5E-11 51.9 7.5 61 16-81 32-92 (171)
45 KOG0377 Protein serine/threoni 98.6 5E-07 1.1E-11 60.3 7.7 67 17-84 548-618 (631)
46 PRK12309 transaldolase/EF-hand 98.6 5E-07 1.1E-11 59.8 7.5 60 11-84 329-388 (391)
47 KOG0036 Predicted mitochondria 98.5 1.1E-06 2.3E-11 58.1 8.3 66 15-81 13-79 (463)
48 KOG0044 Ca2+ sensor (EF-Hand s 98.5 2.9E-06 6.3E-11 51.3 8.9 74 11-84 21-95 (193)
49 KOG4223 Reticulocalbin, calume 98.3 1.8E-06 4E-11 55.3 4.9 67 13-80 74-140 (325)
50 KOG0038 Ca2+-binding kinase in 98.2 4.6E-06 1E-10 48.3 5.1 64 17-81 109-177 (189)
51 PF13202 EF-hand_5: EF hand; P 98.2 3.8E-06 8.2E-11 34.6 3.2 22 19-41 2-23 (25)
52 PF13202 EF-hand_5: EF hand; P 98.1 6.5E-06 1.4E-10 33.9 3.0 25 55-79 1-25 (25)
53 PF10591 SPARC_Ca_bdg: Secrete 98.1 1.9E-06 4E-11 48.0 1.4 60 16-78 54-113 (113)
54 KOG0040 Ca2+-binding actin-bun 98.1 2.2E-05 4.8E-10 58.9 7.0 69 12-81 2246-2324(2399)
55 KOG0034 Ca2+/calmodulin-depend 98.0 9.8E-05 2.1E-09 44.6 8.1 65 20-85 70-136 (187)
56 PF13405 EF-hand_6: EF-hand do 98.0 1.8E-05 3.8E-10 34.0 3.3 28 54-81 1-28 (31)
57 KOG4223 Reticulocalbin, calume 98.0 1.3E-05 2.8E-10 51.5 3.9 58 19-77 244-301 (325)
58 KOG4251 Calcium binding protei 97.8 1.5E-05 3.3E-10 49.9 2.7 65 14-79 99-166 (362)
59 KOG0046 Ca2+-binding actin-bun 97.8 0.00038 8.3E-09 47.6 8.5 73 10-84 10-88 (627)
60 PF13833 EF-hand_8: EF-hand do 97.6 0.0002 4.3E-09 34.3 4.4 32 13-45 22-53 (54)
61 PF09279 EF-hand_like: Phospho 97.5 0.00061 1.3E-08 35.6 5.4 63 17-81 1-69 (83)
62 smart00054 EFh EF-hand, calciu 97.5 0.00021 4.6E-09 28.8 3.0 26 55-80 2-27 (29)
63 smart00054 EFh EF-hand, calciu 97.5 0.00027 5.8E-09 28.5 3.1 28 17-45 1-28 (29)
64 KOG1029 Endocytic adaptor prot 97.4 0.00044 9.5E-09 49.4 5.2 62 16-80 195-256 (1118)
65 KOG2643 Ca2+ binding protein, 97.2 0.00027 5.9E-09 47.4 2.3 58 30-87 401-459 (489)
66 KOG4065 Uncharacterized conser 97.2 0.0025 5.3E-08 35.7 5.5 66 12-78 62-142 (144)
67 KOG1955 Ral-GTPase effector RA 97.0 0.0029 6.3E-08 43.4 5.8 59 19-80 234-292 (737)
68 PF13499 EF-hand_7: EF-hand do 97.0 0.0014 3.1E-08 32.5 3.2 29 55-83 2-30 (66)
69 PF05517 p25-alpha: p25-alpha 96.8 0.024 5.1E-07 33.3 7.7 65 18-83 1-71 (154)
70 KOG0377 Protein serine/threoni 96.6 0.018 4E-07 39.2 7.3 67 16-83 464-577 (631)
71 KOG4666 Predicted phosphate ac 96.5 0.0069 1.5E-07 39.6 4.6 67 12-80 292-358 (412)
72 KOG2643 Ca2+ binding protein, 96.5 0.0024 5.1E-08 43.0 2.5 54 29-84 211-264 (489)
73 cd05029 S-100A6 S-100A6: S-100 96.2 0.022 4.8E-07 30.3 4.9 35 11-46 46-80 (88)
74 KOG3555 Ca2+-binding proteogly 96.2 0.011 2.3E-07 39.0 4.1 64 13-81 247-310 (434)
75 cd05026 S-100Z S-100Z: S-100Z 96.1 0.02 4.4E-07 30.6 4.4 33 13-46 50-82 (93)
76 KOG0042 Glycerol-3-phosphate d 96.1 0.023 5E-07 39.7 5.5 67 19-86 596-662 (680)
77 cd05025 S-100A1 S-100A1: S-100 96.1 0.024 5.1E-07 30.1 4.6 34 12-46 48-81 (92)
78 KOG1029 Endocytic adaptor prot 96.0 0.066 1.4E-06 38.9 7.7 67 15-83 12-79 (1118)
79 cd05031 S-100A10_like S-100A10 96.0 0.0098 2.1E-07 31.8 3.0 35 12-47 47-81 (94)
80 KOG0038 Ca2+-binding kinase in 96.0 0.032 7E-07 32.7 5.2 68 20-88 75-143 (189)
81 KOG4578 Uncharacterized conser 96.0 0.0053 1.1E-07 40.2 2.1 64 17-83 334-400 (421)
82 cd05023 S-100A11 S-100A11: S-1 95.9 0.03 6.5E-07 29.8 4.5 33 13-46 49-81 (89)
83 PF14788 EF-hand_10: EF hand; 95.9 0.033 7.2E-07 26.7 4.1 34 12-46 17-50 (51)
84 KOG0169 Phosphoinositide-speci 95.8 0.038 8.2E-07 39.6 5.8 70 11-81 131-200 (746)
85 cd05022 S-100A13 S-100A13: S-1 95.8 0.026 5.5E-07 30.2 3.9 30 16-46 47-76 (89)
86 cd05027 S-100B S-100B: S-100B 95.7 0.048 1E-06 29.0 4.8 35 11-46 46-80 (88)
87 cd00051 EFh EF-hand, calcium b 95.7 0.039 8.4E-07 25.9 4.1 32 11-43 31-62 (63)
88 KOG2243 Ca2+ release channel ( 95.7 0.028 6.1E-07 43.4 4.9 57 21-79 4062-4118(5019)
89 smart00027 EH Eps15 homology d 95.6 0.036 7.8E-07 29.7 4.1 34 12-46 40-73 (96)
90 cd05030 calgranulins Calgranul 95.6 0.05 1.1E-06 28.8 4.6 32 14-46 49-80 (88)
91 cd00052 EH Eps15 homology doma 95.6 0.05 1.1E-06 26.6 4.3 32 13-45 30-61 (67)
92 cd00252 SPARC_EC SPARC_EC; ext 95.3 0.048 1E-06 30.6 4.1 30 14-44 78-107 (116)
93 PF05042 Caleosin: Caleosin re 95.3 0.22 4.8E-06 29.9 6.9 64 17-81 8-124 (174)
94 PF12763 EF-hand_4: Cytoskelet 95.3 0.059 1.3E-06 29.6 4.3 34 10-44 37-70 (104)
95 KOG2562 Protein phosphatase 2 95.1 0.14 3.1E-06 35.1 6.4 56 22-81 284-343 (493)
96 cd00213 S-100 S-100: S-100 dom 95.0 0.1 2.2E-06 27.3 4.6 33 13-46 48-80 (88)
97 PF14658 EF-hand_9: EF-hand do 94.9 0.11 2.4E-06 26.2 4.4 34 11-45 30-64 (66)
98 KOG4251 Calcium binding protei 94.8 0.13 2.8E-06 32.7 5.2 61 16-77 281-341 (362)
99 KOG0035 Ca2+-binding actin-bun 94.7 0.18 4E-06 37.1 6.4 65 16-81 747-816 (890)
100 PLN02228 Phosphoinositide phos 94.4 0.57 1.2E-05 33.1 8.1 69 10-81 18-92 (567)
101 cd05024 S-100A10 S-100A10: A s 94.1 0.24 5.1E-06 26.7 4.7 34 13-47 45-78 (91)
102 KOG2871 Uncharacterized conser 93.5 0.1 2.2E-06 34.9 3.2 63 12-75 305-368 (449)
103 PLN02230 phosphoinositide phos 93.4 1 2.3E-05 32.1 8.0 70 10-81 23-102 (598)
104 KOG2562 Protein phosphatase 2 93.1 0.35 7.6E-06 33.2 5.1 71 12-83 307-381 (493)
105 KOG4666 Predicted phosphate ac 92.9 0.47 1E-05 31.4 5.4 66 16-82 259-325 (412)
106 KOG0751 Mitochondrial aspartat 92.7 0.95 2E-05 31.7 6.8 23 57-79 112-134 (694)
107 PLN02222 phosphoinositide phos 92.5 1.3 2.8E-05 31.5 7.4 69 10-81 19-90 (581)
108 KOG0751 Mitochondrial aspartat 92.3 0.49 1.1E-05 33.1 5.1 64 14-81 106-175 (694)
109 PF08976 DUF1880: Domain of un 92.3 0.18 3.9E-06 28.3 2.6 32 49-80 3-34 (118)
110 PRK12309 transaldolase/EF-hand 91.9 0.95 2.1E-05 30.6 6.0 30 47-76 328-357 (391)
111 PF09069 EF-hand_3: EF-hand; 91.5 1.3 2.8E-05 23.8 7.7 62 15-80 2-74 (90)
112 PF08726 EFhand_Ca_insen: Ca2+ 91.4 0.34 7.4E-06 24.7 2.8 56 13-77 3-65 (69)
113 KOG3866 DNA-binding protein of 90.6 0.59 1.3E-05 30.8 4.0 59 21-80 249-323 (442)
114 KOG0998 Synaptic vesicle prote 90.5 0.12 2.5E-06 38.0 0.8 63 15-80 282-344 (847)
115 KOG4347 GTPase-activating prot 89.6 0.71 1.5E-05 33.0 4.0 57 16-74 555-611 (671)
116 PLN02952 phosphoinositide phos 89.4 5 0.00011 28.8 8.0 66 13-80 35-109 (599)
117 KOG1707 Predicted Ras related/ 88.7 0.85 1.8E-05 32.4 3.8 60 16-80 315-376 (625)
118 PF12174 RST: RCD1-SRO-TAF4 (R 88.5 0.55 1.2E-05 24.0 2.2 39 46-84 18-56 (70)
119 PLN02223 phosphoinositide phos 88.4 7.1 0.00015 27.7 8.3 70 10-81 10-92 (537)
120 PLN02952 phosphoinositide phos 87.7 3.2 6.9E-05 29.7 6.2 55 29-84 12-68 (599)
121 KOG1707 Predicted Ras related/ 86.4 4.5 9.9E-05 29.0 6.3 78 2-80 180-264 (625)
122 KOG0041 Predicted Ca2+-binding 86.4 1.5 3.3E-05 27.2 3.6 29 54-82 100-128 (244)
123 PF09279 EF-hand_like: Phospho 85.8 1.4 3E-05 22.7 2.9 30 54-84 1-30 (83)
124 PF05042 Caleosin: Caleosin re 84.6 6.7 0.00015 23.7 6.7 67 13-81 93-166 (174)
125 PF14513 DAG_kinase_N: Diacylg 84.4 1.7 3.8E-05 25.1 3.1 52 31-84 5-63 (138)
126 KOG1954 Endocytosis/signaling 82.5 3.4 7.4E-05 28.3 4.2 55 19-77 447-501 (532)
127 KOG4004 Matricellular protein 80.7 0.71 1.5E-05 28.5 0.6 49 29-79 200-248 (259)
128 cd07313 terB_like_2 tellurium 79.4 5 0.00011 21.4 3.7 51 30-80 12-64 (104)
129 KOG3449 60S acidic ribosomal p 79.3 8.8 0.00019 21.4 5.3 43 20-63 5-47 (112)
130 KOG1265 Phospholipase C [Lipid 79.0 19 0.0004 27.6 7.1 66 14-80 219-298 (1189)
131 KOG0998 Synaptic vesicle prote 77.5 2 4.4E-05 31.9 2.2 68 13-83 8-75 (847)
132 KOG3555 Ca2+-binding proteogly 77.2 4 8.6E-05 27.5 3.2 63 17-80 212-277 (434)
133 PF08414 NADPH_Ox: Respiratory 77.2 9.9 0.00021 20.8 6.3 62 18-85 32-96 (100)
134 PF08461 HTH_12: Ribonuclease 76.9 7.6 0.00017 19.4 3.8 37 30-66 10-46 (66)
135 TIGR01639 P_fal_TIGR01639 Plas 76.8 7.4 0.00016 19.2 4.5 47 32-83 8-54 (61)
136 PF01023 S_100: S-100/ICaBP ty 75.9 6.4 0.00014 18.0 3.8 30 16-45 6-36 (44)
137 PF07308 DUF1456: Protein of u 75.8 8.6 0.00019 19.5 5.6 46 35-80 15-60 (68)
138 COG4103 Uncharacterized protei 74.8 15 0.00031 21.6 4.9 59 20-82 34-95 (148)
139 PF11116 DUF2624: Protein of u 74.3 11 0.00024 20.0 6.7 51 32-82 13-63 (85)
140 PRK00523 hypothetical protein; 74.2 10 0.00022 19.5 4.8 32 31-62 37-68 (72)
141 KOG0169 Phosphoinositide-speci 73.9 30 0.00064 25.7 7.0 65 14-83 170-234 (746)
142 KOG0040 Ca2+-binding actin-bun 73.9 13 0.00027 30.2 5.4 60 14-75 2294-2355(2399)
143 KOG0506 Glutaminase (contains 72.6 17 0.00037 25.7 5.4 60 20-80 90-157 (622)
144 COG3763 Uncharacterized protei 72.1 12 0.00025 19.2 5.0 33 31-63 36-68 (71)
145 PF09373 PMBR: Pseudomurein-bi 70.9 4.8 0.0001 17.2 1.8 18 67-84 2-19 (33)
146 PTZ00373 60S Acidic ribosomal 70.3 17 0.00037 20.4 6.7 50 22-77 9-58 (112)
147 PF03672 UPF0154: Uncharacteri 69.8 13 0.00027 18.7 4.8 32 31-62 29-60 (64)
148 TIGR03573 WbuX N-acetyl sugar 69.1 23 0.0005 23.5 5.4 43 31-79 300-342 (343)
149 KOG1955 Ral-GTPase effector RA 68.9 7.7 0.00017 27.5 3.2 34 11-45 260-293 (737)
150 PRK01844 hypothetical protein; 67.3 16 0.00034 18.8 4.7 32 31-62 36-67 (72)
151 PF00404 Dockerin_1: Dockerin 64.3 8.6 0.00019 14.8 2.7 14 65-78 3-16 (21)
152 TIGR01848 PHA_reg_PhaR polyhyd 63.1 24 0.00053 19.6 4.9 21 24-45 11-31 (107)
153 PF09068 EF-hand_2: EF hand; 62.0 27 0.0006 19.8 5.9 63 16-79 41-123 (127)
154 PF03979 Sigma70_r1_1: Sigma-7 61.5 16 0.00035 18.9 3.0 45 15-64 6-50 (82)
155 KOG4070 Putative signal transd 60.9 24 0.00051 21.1 3.8 66 17-83 13-87 (180)
156 cd05833 Ribosomal_P2 Ribosomal 55.9 34 0.00074 19.0 6.7 53 22-80 7-59 (109)
157 PF02761 Cbl_N2: CBL proto-onc 55.8 30 0.00066 18.4 5.9 51 30-80 19-69 (85)
158 PF07879 PHB_acc_N: PHB/PHA ac 55.5 26 0.00057 17.6 2.9 21 24-45 11-31 (64)
159 PF07499 RuvA_C: RuvA, C-termi 55.2 21 0.00046 16.4 4.0 36 37-76 4-39 (47)
160 PF04282 DUF438: Family of unk 55.0 28 0.00062 17.8 5.7 6 34-39 29-34 (71)
161 KOG4347 GTPase-activating prot 54.8 31 0.00068 25.2 4.2 34 51-84 553-586 (671)
162 PF01885 PTS_2-RNA: RNA 2'-pho 53.8 40 0.00087 20.5 4.2 35 29-63 28-62 (186)
163 PF11829 DUF3349: Protein of u 52.4 38 0.00082 18.5 3.6 50 12-62 35-85 (96)
164 PRK00819 RNA 2'-phosphotransfe 51.7 53 0.0011 19.9 4.4 35 29-63 29-63 (179)
165 KOG4403 Cell surface glycoprot 49.9 83 0.0018 22.2 5.4 65 11-80 63-128 (575)
166 PRK06402 rpl12p 50S ribosomal 49.7 45 0.00097 18.5 5.5 39 33-76 16-54 (106)
167 cd08332 CARD_CASP2 Caspase act 48.9 41 0.00088 17.8 3.8 48 30-82 31-78 (90)
168 cd08330 CARD_ASC_NALP1 Caspase 48.7 39 0.00085 17.6 4.5 51 30-85 26-76 (82)
169 PF10437 Lip_prot_lig_C: Bacte 48.1 39 0.00085 17.4 4.3 43 35-79 43-86 (86)
170 COG0848 ExbD Biopolymer transp 47.8 25 0.00054 20.3 2.5 25 65-89 103-127 (137)
171 COG5562 Phage envelope protein 46.3 16 0.00035 21.2 1.5 21 60-80 79-99 (137)
172 KOG3866 DNA-binding protein of 45.9 29 0.00064 23.2 2.8 47 35-81 225-272 (442)
173 KOG0039 Ferric reductase, NADH 45.9 85 0.0018 23.0 5.4 68 11-80 13-88 (646)
174 cd08819 CARD_MDA5_2 Caspase ac 45.4 49 0.0011 17.7 5.2 52 31-85 31-82 (88)
175 PF11020 DUF2610: Domain of un 44.7 48 0.001 17.5 3.4 50 32-81 27-77 (82)
176 PRK11858 aksA trans-homoaconit 44.6 97 0.0021 20.9 5.9 52 37-88 323-377 (378)
177 PF07261 DnaB_2: Replication i 44.6 41 0.00089 16.6 5.4 64 22-88 2-66 (77)
178 PF09454 Vps23_core: Vps23 cor 43.6 29 0.00062 17.4 2.1 19 67-85 37-55 (65)
179 TIGR02675 tape_meas_nterm tape 43.0 46 0.00099 17.0 2.8 32 14-45 11-42 (75)
180 PF08708 PriCT_1: Primase C te 42.6 45 0.00097 16.5 4.4 33 55-87 38-70 (71)
181 PF12588 PSDC: Phophatidylseri 42.3 70 0.0015 18.7 4.9 14 71-84 44-57 (141)
182 PF11593 Med3: Mediator comple 41.7 1E+02 0.0022 21.1 4.8 14 69-82 42-55 (379)
183 COG2818 Tag 3-methyladenine DN 41.5 27 0.00057 21.5 2.0 32 16-48 55-86 (188)
184 cd08324 CARD_NOD1_CARD4 Caspas 41.1 58 0.0013 17.3 5.4 50 30-84 26-75 (85)
185 PF09336 Vps4_C: Vps4 C termin 40.9 48 0.001 16.3 2.8 26 33-58 29-54 (62)
186 PF00046 Homeobox: Homeobox do 40.7 41 0.0009 15.6 5.2 44 13-61 7-50 (57)
187 PRK14981 DNA-directed RNA poly 40.2 67 0.0014 17.8 3.7 31 51-85 80-110 (112)
188 TIGR01529 argR_whole arginine 39.4 78 0.0017 18.4 4.1 34 30-63 13-46 (146)
189 PRK09389 (R)-citramalate synth 39.0 1.2E+02 0.0026 21.4 5.1 47 37-83 321-369 (488)
190 PF05099 TerB: Tellurite resis 38.1 18 0.00039 20.2 0.9 48 30-77 36-85 (140)
191 PF03997 VPS28: VPS28 protein; 38.0 97 0.0021 19.0 4.9 42 31-78 140-186 (188)
192 PLN00138 large subunit ribosom 37.9 76 0.0016 17.8 5.8 43 29-76 13-55 (113)
193 PF01316 Arg_repressor: Argini 37.8 59 0.0013 16.5 3.7 30 33-62 19-48 (70)
194 KOG2301 Voltage-gated Ca2+ cha 37.8 33 0.00072 27.9 2.5 64 16-81 1417-1484(1592)
195 cd04411 Ribosomal_P1_P2_L12p R 36.7 76 0.0017 17.5 6.9 42 34-80 17-58 (105)
196 PHA02105 hypothetical protein 36.4 59 0.0013 16.0 3.2 49 33-81 4-57 (68)
197 KOG4301 Beta-dystrobrevin [Cyt 35.7 1.3E+02 0.0028 20.6 4.6 60 22-83 116-175 (434)
198 PF09107 SelB-wing_3: Elongati 35.4 55 0.0012 15.4 2.5 31 30-65 7-37 (50)
199 PF02671 PAH: Paired amphipath 35.4 50 0.0011 14.9 2.3 16 68-83 17-32 (47)
200 COG1460 Uncharacterized protei 35.1 77 0.0017 17.9 3.1 15 70-84 96-110 (114)
201 TIGR02801 tolR TolR protein. T 34.7 61 0.0013 18.0 2.8 25 65-89 99-123 (129)
202 TIGR01446 DnaD_dom DnaD and ph 34.2 65 0.0014 15.9 5.2 55 32-88 11-66 (73)
203 KOG0713 Molecular chaperone (D 34.1 1.5E+02 0.0032 20.1 4.7 50 10-61 25-80 (336)
204 PRK09462 fur ferric uptake reg 33.9 96 0.0021 17.8 5.1 41 21-62 22-62 (148)
205 PF03874 RNA_pol_Rpb4: RNA pol 32.9 88 0.0019 17.0 4.5 29 52-84 87-115 (117)
206 KOG3077 Uncharacterized conser 32.7 1.4E+02 0.0031 19.4 7.0 67 12-79 60-127 (260)
207 KOG2351 RNA polymerase II, fou 32.0 71 0.0015 18.4 2.6 17 67-83 112-128 (134)
208 PRK09430 djlA Dna-J like membr 31.4 1.5E+02 0.0032 19.1 5.5 49 30-82 68-121 (267)
209 TIGR02804 ExbD_2 TonB system t 30.7 1E+02 0.0022 17.1 4.8 25 65-89 90-114 (121)
210 PF09873 DUF2100: Uncharacteri 30.2 1.5E+02 0.0031 18.7 5.4 18 29-46 37-54 (215)
211 cd05831 Ribosomal_P1 Ribosomal 30.1 1E+02 0.0022 16.9 5.4 43 30-77 14-56 (103)
212 TIGR02803 ExbD_1 TonB system t 30.1 78 0.0017 17.5 2.7 25 65-89 91-115 (122)
213 PF04433 SWIRM: SWIRM domain; 30.0 44 0.00095 17.3 1.6 9 31-39 51-59 (86)
214 PF01498 HTH_Tnp_Tc3_2: Transp 30.0 78 0.0017 15.5 2.8 32 31-62 11-42 (72)
215 cd07176 terB tellurite resista 29.4 45 0.00097 17.6 1.6 13 31-43 16-28 (111)
216 TIGR01425 SRP54_euk signal rec 29.0 97 0.0021 21.6 3.4 30 54-86 314-343 (429)
217 cd07316 terB_like_DjlA N-termi 28.8 97 0.0021 16.3 5.4 12 30-41 12-23 (106)
218 PRK10867 signal recognition pa 28.5 1.2E+02 0.0025 21.2 3.7 33 51-86 312-344 (433)
219 PF12419 DUF3670: SNF2 Helicas 28.5 1.2E+02 0.0027 17.3 4.0 49 30-78 80-138 (141)
220 TIGR00959 ffh signal recogniti 28.3 1.2E+02 0.0026 21.1 3.7 33 51-86 311-343 (428)
221 PF09494 Slx4: Slx4 endonuclea 28.1 85 0.0018 15.4 3.5 26 34-59 25-54 (64)
222 PF14178 YppF: YppF-like prote 27.7 89 0.0019 15.5 2.3 19 68-86 35-53 (60)
223 PRK00771 signal recognition pa 27.7 1.3E+02 0.0027 21.0 3.8 30 54-86 307-336 (437)
224 PF06207 DUF1002: Protein of u 27.6 1.3E+02 0.0028 19.0 3.5 47 35-81 173-223 (225)
225 KOG2243 Ca2+ release channel ( 27.3 47 0.001 27.5 1.8 28 58-85 4062-4089(5019)
226 cd08326 CARD_CASP9 Caspase act 27.1 1.1E+02 0.0023 16.1 3.9 49 30-83 27-75 (84)
227 smart00513 SAP Putative DNA-bi 26.9 64 0.0014 13.6 2.5 18 33-50 3-20 (35)
228 cd06403 PB1_Par6 The PB1 domai 26.8 42 0.00091 17.6 1.1 17 67-83 19-35 (80)
229 COG5069 SAC6 Ca2+-binding acti 26.8 1.4E+02 0.0029 21.6 3.7 32 19-51 488-519 (612)
230 PF08671 SinI: Anti-repressor 26.5 66 0.0014 13.5 2.0 15 74-88 4-18 (30)
231 COG0541 Ffh Signal recognition 26.1 1.3E+02 0.0029 21.2 3.6 46 38-86 298-343 (451)
232 TIGR00624 tag DNA-3-methyladen 26.0 59 0.0013 19.8 1.8 32 16-48 53-84 (179)
233 KOG2116 Protein involved in pl 25.9 79 0.0017 23.5 2.6 36 31-66 538-574 (738)
234 smart00390 GoLoco LGN motif, p 25.9 63 0.0014 13.1 1.4 14 73-86 2-15 (26)
235 PF09860 DUF2087: Uncharacteri 25.9 1E+02 0.0023 15.6 3.2 15 32-46 28-42 (71)
236 PRK11024 colicin uptake protei 25.8 1E+02 0.0022 17.6 2.7 25 65-89 109-133 (141)
237 cd06404 PB1_aPKC PB1 domain is 25.8 89 0.0019 16.6 2.2 9 36-44 58-66 (83)
238 cd08785 CARD_CARD9-like Caspas 25.7 1.2E+02 0.0025 16.1 4.1 51 30-82 27-77 (86)
239 COG2058 RPP1A Ribosomal protei 25.5 1.3E+02 0.0029 16.8 6.3 40 33-77 16-55 (109)
240 PF07128 DUF1380: Protein of u 25.0 1.5E+02 0.0033 17.3 3.3 64 19-83 10-81 (139)
241 PLN02230 phosphoinositide phos 25.0 1.4E+02 0.0029 21.9 3.6 32 51-83 27-58 (598)
242 smart00389 HOX Homeodomain. DN 24.9 85 0.0018 14.2 5.8 44 13-61 7-50 (56)
243 KOG0798 Uncharacterized conser 24.7 94 0.002 21.3 2.6 21 69-89 275-295 (380)
244 KOG0039 Ferric reductase, NADH 24.4 2E+02 0.0043 21.2 4.4 47 31-84 2-48 (646)
245 PF00808 CBFD_NFYB_HMF: Histon 24.3 1E+02 0.0022 14.9 4.1 63 13-79 3-65 (65)
246 smart00657 RPOL4c DNA-directed 24.0 1.4E+02 0.0031 16.5 3.4 29 52-84 85-113 (118)
247 PF13623 SurA_N_2: SurA N-term 23.8 1.6E+02 0.0035 17.1 4.1 34 45-78 101-144 (145)
248 PRK00441 argR arginine repress 23.8 1.6E+02 0.0036 17.2 5.5 34 30-63 15-48 (149)
249 PF02037 SAP: SAP domain; Int 23.7 78 0.0017 13.4 2.2 17 34-50 4-20 (35)
250 cd08032 LARP_7 La RNA-binding 23.6 1.1E+02 0.0024 16.1 2.3 10 30-39 36-45 (82)
251 PRK10353 3-methyl-adenine DNA 22.8 53 0.0011 20.1 1.2 31 16-47 54-84 (187)
252 PF13829 DUF4191: Domain of un 22.7 2.2E+02 0.0047 18.1 4.3 34 29-62 163-196 (224)
253 PF02472 ExbD: Biopolymer tran 22.3 1.1E+02 0.0024 16.7 2.4 50 34-89 73-122 (130)
254 PF12949 HeH: HeH/LEM domain; 22.2 78 0.0017 13.8 1.4 18 34-51 4-21 (35)
255 cd03035 ArsC_Yffb Arsenate Red 22.0 1.4E+02 0.0029 16.2 2.6 16 32-47 34-49 (105)
256 PF00619 CARD: Caspase recruit 21.7 1.3E+02 0.0027 15.1 3.9 47 31-82 28-74 (85)
257 PF05788 Orbi_VP1: Orbivirus R 21.5 1.4E+02 0.0029 23.7 3.1 37 29-65 1133-1169(1301)
258 PF08100 Dimerisation: Dimeris 21.4 66 0.0014 15.2 1.1 23 21-44 11-33 (51)
259 PF14164 YqzH: YqzH-like prote 21.4 1.3E+02 0.0028 15.1 4.2 32 15-46 7-38 (64)
260 cd08327 CARD_RAIDD Caspase act 21.4 1.5E+02 0.0033 15.9 4.9 47 30-81 32-78 (94)
261 cd01671 CARD Caspase activatio 21.3 1.3E+02 0.0027 14.9 4.0 48 30-82 24-71 (80)
262 PRK11267 biopolymer transport 21.0 1.4E+02 0.0031 17.0 2.7 25 65-89 105-129 (141)
263 PF04614 Pex19: Pex19 protein 21.0 2.1E+02 0.0046 18.2 3.7 64 17-87 147-213 (248)
264 PF10891 DUF2719: Protein of u 21.0 1.1E+02 0.0023 16.1 1.9 14 67-80 33-46 (81)
265 PRK03170 dihydrodipicolinate s 20.9 1.5E+02 0.0032 19.0 3.0 11 70-80 51-61 (292)
266 PF12486 DUF3702: ImpA domain 20.6 2E+02 0.0043 17.0 5.6 23 23-46 76-98 (148)
267 PF02885 Glycos_trans_3N: Glyc 20.5 1.3E+02 0.0028 14.7 4.4 27 33-59 14-41 (66)
268 cd00950 DHDPS Dihydrodipicolin 20.2 1.6E+02 0.0034 18.8 3.0 12 70-81 50-61 (284)
269 PF12793 SgrR_N: Sugar transpo 20.2 1.8E+02 0.0038 16.2 3.8 39 17-62 5-43 (115)
270 COG1438 ArgR Arginine represso 20.2 1.9E+02 0.0042 17.1 3.1 32 31-62 18-49 (150)
271 PF02269 TFIID-18kDa: Transcri 20.1 45 0.00097 17.8 0.4 17 64-80 49-65 (93)
272 PF04876 Tenui_NCP: Tenuivirus 20.0 1.8E+02 0.0038 17.4 2.8 30 52-81 82-111 (175)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.58 E-value=2.2e-14 Score=83.67 Aligned_cols=70 Identities=31% Similarity=0.480 Sum_probs=66.3
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
...++++++.+|+.||. +++|+|+..++..++..+|..++++++..+++.++.+++|.|+|++|+.++..
T Consensus 87 ~~~~~Eel~~aF~~fD~-d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 87 RGDKEEELREAFKLFDK-DHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cCCcHHHHHHHHHHhCC-CCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 56778999999999999 99999999999999999999999999999999999999999999999998754
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.57 E-value=2.9e-14 Score=72.18 Aligned_cols=62 Identities=29% Similarity=0.457 Sum_probs=54.3
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcH----HHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSG----FRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~----~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
+++.+|..+|. +++|.|+.+|+..++..++...+. ..+..++..+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~-d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDK-DGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHST-TSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcC-CccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 57899999999 999999999999999998865544 455566999999999999999999875
No 3
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.54 E-value=1.7e-13 Score=73.22 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=61.1
Q ss_pred HHHHHHHHHhc-CCCCCC-cccHHHHHHHHHH-----hCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 16 EQVKRYLKRYA-TDDKDG-KLRWNELKVALKD-----LGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 16 ~~l~~~f~~~d-~~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
..++++|+.|| + +++| .|+..||+.+++. ++...++.+++.+++.+|.+++|.|+|++|+.++..+.
T Consensus 8 ~~l~~aF~~fD~~-dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 8 VALIDVFHQYSGR-EGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHhccc-CCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 46799999998 8 8999 5999999999998 78888999999999999999999999999999887654
No 4
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.50 E-value=3e-13 Score=72.33 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHH-hCCCCcH-HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKD-LGLHFSG-FRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
..++.+|+.||+-+++|+|+..||+.++.. ++..++. .+++.+++.+|.+++|.|+|+||+.++..+..
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 467899999985257789999999999998 8877777 89999999999999999999999999876543
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=4.3e-13 Score=77.91 Aligned_cols=67 Identities=30% Similarity=0.446 Sum_probs=63.4
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
..++++++|+.||+ +++|+|+..||+.++..+|...+..++..++...|.+++|.|+|++|+.++..
T Consensus 83 ~~~el~eaF~~fD~-d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 83 SSEELKEAFRVFDK-DGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cHHHHHHHHHHHcc-CCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 46799999999999 99999999999999999999999999999999999999999999999998853
No 6
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.46 E-value=1.3e-12 Score=70.29 Aligned_cols=69 Identities=28% Similarity=0.245 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhc-CCCCCC-cccHHHHHHHHHH-hC----CCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 15 EEQVKRYLKRYA-TDDKDG-KLRWNELKVALKD-LG----LHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 15 ~~~l~~~f~~~d-~~~~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
.+.++++|+.|| . +++| .|+..|++.+++. ++ ..++..+++.++..+|.+++|.|+|++|+.++..+..
T Consensus 8 ~~~l~~~F~~fDd~-dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~ 83 (92)
T cd05025 8 METLINVFHAHSGK-EGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTV 83 (92)
T ss_pred HHHHHHHHHHHhcc-cCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHH
Confidence 468899999997 9 9999 5999999999975 44 3467889999999999999999999999999876543
No 7
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.43 E-value=2.4e-12 Score=69.68 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 15 EEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 15 ~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
..++..+|..+|. +++|.|+..+++.+++..+ ++..++..++..++.+++|.|+++||+.++..+.++.
T Consensus 9 ~~~l~~~F~~~D~-d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 9 KAKYEQIFRSLDK-NQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHhCC-CCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3577899999999 9999999999999998865 7888999999999999999999999999998776653
No 8
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.43 E-value=3e-12 Score=69.04 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=56.8
Q ss_pred HHHHHHHHHhc-CCCCCC-cccHHHHHHHHHHh-----CCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 16 EQVKRYLKRYA-TDDKDG-KLRWNELKVALKDL-----GLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 16 ~~l~~~f~~~d-~~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
..+.++|+.|| + +++| .|+..||+.++... ....+..++..++..+|.+++|.|+|+||+.++..+.
T Consensus 10 ~~~~~~F~~~dd~-dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGK-EGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHcc-CCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 45678899998 7 8998 59999999999762 3344677999999999999999999999999997664
No 9
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.42 E-value=4.3e-12 Score=67.80 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCC-CCcccHHHHHHHHHH---hCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 17 QVKRYLKRYATDDK-DGKLRWNELKVALKD---LGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 17 ~l~~~f~~~d~~~~-~g~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
.+..+|+.|+..++ +|+|+.+||+.++.. +|..++.+++..+++.+|.+++|+|+|+||+.++.....
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~ 82 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALAL 82 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 56788999985245 789999999999963 588899999999999999999999999999999876654
No 10
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.40 E-value=5e-12 Score=68.22 Aligned_cols=67 Identities=28% Similarity=0.292 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhc-CCCC-CCcccHHHHHHHHHH-----hCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 15 EEQVKRYLKRYA-TDDK-DGKLRWNELKVALKD-----LGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 15 ~~~l~~~f~~~d-~~~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
..+++.+|..|| . ++ +|.|+..|++.++.. ++..++..++..++..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~-dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGK-DGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhcc-CCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 467899999998 5 65 699999999999986 4667889999999999999999999999999888644
No 11
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=5.7e-12 Score=73.21 Aligned_cols=68 Identities=28% Similarity=0.408 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 15 EEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 15 ~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
..+++.+|..||+ +++|.|+..++..+++.++..++..++..++...|.+++|.|++++|+.++....
T Consensus 7 ~~el~~~F~~fD~-d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 7 ILELKEAFQLFDK-DGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHHCC-CCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 4678999999999 9999999999999999999999999999999999999999999999999997654
No 12
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.38 E-value=7.4e-12 Score=63.16 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=56.1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 19 KRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 19 ~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
+.+|..+|+ +++|.|+..|++.++...+ .+..++..++..++.+++|.|++++|+.++..+.
T Consensus 2 ~~~F~~~D~-~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDP-DGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCC-CCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 568999999 9999999999999998876 4888999999999999999999999999887654
No 13
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.34 E-value=8.1e-12 Score=60.85 Aligned_cols=52 Identities=31% Similarity=0.516 Sum_probs=48.4
Q ss_pred CCCcccHHHHHHHHHHhCCC-CcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLGLH-FSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
++|.|+.++|+.++..+|.. ++..++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888888 99999999999999999999999999999864
No 14
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.31 E-value=5.2e-11 Score=63.74 Aligned_cols=67 Identities=19% Similarity=0.177 Sum_probs=56.6
Q ss_pred HHHHHHHHH-hcCCCCCC-cccHHHHHHHHHHh-----CCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 16 EQVKRYLKR-YATDDKDG-KLRWNELKVALKDL-----GLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 16 ~~l~~~f~~-~d~~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
..+..+|+. +++ +++| .|+.+||+.++... +...++.++..+++.+|.+++|.|+|+||+.++..+.
T Consensus 9 ~~l~~~F~~y~~~-dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGK-DGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhcc-CCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 567889999 567 7775 99999999999764 3345678999999999999999999999999987654
No 15
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.29 E-value=4.7e-11 Score=58.52 Aligned_cols=61 Identities=33% Similarity=0.506 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 18 VKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 18 l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
+..+|..+|. +++|.|+..++..++..++...+...+..++..++.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~-~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDK-DGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCC-CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999 999999999999999999988999999999999999999999999998765
No 16
>PTZ00183 centrin; Provisional
Probab=99.28 E-value=6.2e-11 Score=68.60 Aligned_cols=68 Identities=29% Similarity=0.470 Sum_probs=62.4
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
..++++..+|+.+|. +++|.|+..||..++..++..++..++..++..++.+++|.|++++|..++..
T Consensus 87 ~~~~~l~~~F~~~D~-~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 87 DPREEILKAFRLFDD-DKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CcHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 456788999999999 99999999999999998888899999999999999999999999999998864
No 17
>PF14658 EF-hand_9: EF-hand domain
Probab=99.28 E-value=4.1e-11 Score=60.34 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=57.5
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHhCC-CCcHHHHHHHHHhcCCCCC-CcccHHHHHHHHHHH
Q 045293 21 YLKRYATDDKDGKLRWNELKVALKDLGL-HFSGFRAKRAVHYADVNGD-GCVDEEEMNDLVKYT 82 (89)
Q Consensus 21 ~f~~~d~~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-g~i~~~ef~~~~~~~ 82 (89)
.|..||+ ++.|.|...++...|+.++. .+.+.+++.+..++|+++. |.|+++.|+.+|+.+
T Consensus 3 ~F~~fD~-~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 3 AFDAFDT-QKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred chhhcCC-cCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHHh
Confidence 6899999 99999999999999999987 8999999999999999988 999999999999865
No 18
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=4.7e-11 Score=69.26 Aligned_cols=71 Identities=31% Similarity=0.460 Sum_probs=66.5
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
..++.+++...|+.+|- +++|.|+..+|+.+...+|.++++.++..++..++.+++|.|+-+||..+++++
T Consensus 101 e~dt~eEi~~afrl~D~-D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 101 ERDTKEEIKKAFRLFDD-DKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred ccCcHHHHHHHHHcccc-cCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 34588999999999999 999999999999999999999999999999999999999999999999998753
No 19
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.26 E-value=9.5e-11 Score=62.38 Aligned_cols=69 Identities=25% Similarity=0.237 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCC-CCCCcccHHHHHHHHHH-hCCC----CcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 16 EQVKRYLKRYATD-DKDGKLRWNELKVALKD-LGLH----FSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 16 ~~l~~~f~~~d~~-~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
+.++.+|..||+. +++|.|+..++..++.. ++.. ++..++..++..++.+++|.|+|++|+.++....+
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 5678889999983 48999999999999975 4533 45889999999999999999999999998876654
No 20
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.25 E-value=1.1e-10 Score=68.29 Aligned_cols=67 Identities=25% Similarity=0.380 Sum_probs=62.1
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
++++++|..+|+ +++|.|+..+|..+++.+|.+++..++..++..++. +.+.|+|.+|+.++....+
T Consensus 20 ~~lkeaF~l~D~-d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 20 QELKEAFQLFDR-DSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred HHHHHHHHHhCc-CCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 467888999999 999999999999999999999999999999999998 8899999999999987664
No 21
>PTZ00184 calmodulin; Provisional
Probab=99.24 E-value=1.4e-10 Score=66.39 Aligned_cols=67 Identities=27% Similarity=0.462 Sum_probs=60.1
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
...+.+..+|..+|. +++|.|+..+++.++..++..++...+..++..+|.+++|.|+|+||+.++.
T Consensus 81 ~~~~~~~~~F~~~D~-~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 81 DSEEEIKEAFKVFDR-DGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred cHHHHHHHHHHhhCC-CCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 345678899999999 9999999999999999888888999999999999999999999999988764
No 22
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.24 E-value=1.2e-10 Score=65.13 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=53.8
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
...++.-.|..+|. |++|.|+.+|+..+. .......+..++..+|.+++|.|+++||+.++
T Consensus 46 ~~~~l~w~F~~lD~-d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDG-NYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCC-CCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34578889999999 999999999999766 33557788999999999999999999999998
No 23
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.21 E-value=1.8e-10 Score=69.72 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
..++.+|+.||+ |++|.|+..||+.+|..+|..++.+..+.+++.++...+|.|.|++|+.+.-.+
T Consensus 124 ~~Wr~vF~~~D~-D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 124 NQWRNVFRTYDR-DRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHHHHHhccc-CCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHH
Confidence 467889999999 999999999999999999999999999999999998879999999999877544
No 24
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.18 E-value=2.9e-10 Score=65.68 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=65.4
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
-.++++.+..+|+.||. ++.|.|..+.++.+|...|.+++.++|+.+|..+..+..|.++|.+|+.++.+
T Consensus 96 gtdpe~~I~~AF~~FD~-~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 96 GTDPEEVILNAFKTFDD-EGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred CCCHHHHHHHHHHhcCc-cCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 34668899999999999 99999999999999999999999999999999999999999999999999863
No 25
>PTZ00183 centrin; Provisional
Probab=99.17 E-value=6.8e-10 Score=64.21 Aligned_cols=68 Identities=26% Similarity=0.440 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
...++..+|..+|. +++|.|+..+|..++..++..++...+..++..+|.+++|.|+|++|+.++...
T Consensus 15 ~~~~~~~~F~~~D~-~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 15 QKKEIREAFDLFDT-DGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHHHHHhCC-CCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 34577888999999 999999999999999988887888899999999999999999999999887543
No 26
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.16 E-value=4.4e-10 Score=60.00 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCC--CCCcccHHHHHHHHH-HhCCCCc----HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 16 EQVKRYLKRYATDD--KDGKLRWNELKVALK-DLGLHFS----GFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 16 ~~l~~~f~~~d~~~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
..+...|+.|+. . ++|.|+..||+.++. .++..++ ..++..++..+|.+++|.|+|++|+.++.....
T Consensus 8 ~~~~~~f~~y~~-~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 8 ETIINVFHQYSV-RKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHhc-cCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 456778999985 3 478999999999996 5555555 889999999999999999999999999876543
No 27
>PTZ00184 calmodulin; Provisional
Probab=99.15 E-value=8.3e-10 Score=63.09 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 15 EEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 15 ~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
.++++..|..+|. +++|.|+..+|..++..++..++...+..++..++.+++|.|+|++|+.++...
T Consensus 10 ~~~~~~~F~~~D~-~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 10 IAEFKEAFSLFDK-DGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHHcC-CCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 3567888999999 999999999999999888887888899999999999999999999999887654
No 28
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.14 E-value=5.5e-10 Score=63.54 Aligned_cols=73 Identities=16% Similarity=0.163 Sum_probs=65.9
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCC--CCCcccHHHHHHHHHHHHhc
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVN--GDGCVDEEEMNDLVKYTVKW 85 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~g~i~~~ef~~~~~~~~~~ 85 (89)
+...++++++|..||. .++|+|+...+..+++.+|.++++.++.+.+.....+ +-.+|+|++|+.+++.+.+.
T Consensus 7 ~d~~~e~ke~F~lfD~-~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDR-TGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred cchHHHHHHHHHHHhc-cCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 4556899999999999 9999999999999999999999999999999988776 44789999999999988765
No 29
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.14 E-value=6.5e-10 Score=66.68 Aligned_cols=68 Identities=26% Similarity=0.374 Sum_probs=56.7
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh-CCCCc--HH----HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL-GLHFS--GF----RAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~-~~~~~--~~----~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
..+++++-+|+.||. +++|.|+.+|+.+++..+ +...+ ++ -++.++..+|.+++|+|+++||+.++..
T Consensus 101 ~~~~Kl~faF~vYD~-~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~ 175 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDL-DGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEK 175 (187)
T ss_pred cHHHHHHHHHHHhcC-CCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHc
Confidence 344699999999999 999999999999999866 43444 33 3566789999999999999999998854
No 30
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.09 E-value=2.1e-10 Score=65.21 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=61.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 10 GLTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
....+-+.+-+.++.||+ +++|.|...|++++|..+|..+++.++..++.-.. |.+|.|+|+.|+.-+
T Consensus 82 k~q~t~edfvegLrvFDk-eg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~e-D~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDK-EGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQE-DSNGCINYEAFVKHI 149 (152)
T ss_pred cccCcHHHHHHHHHhhcc-cCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccc-ccCCcCcHHHHHHHH
Confidence 456777888999999999 99999999999999999999999999999997764 678999999998765
No 31
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=3.2e-09 Score=61.76 Aligned_cols=67 Identities=22% Similarity=0.384 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
++++..|..|++ ++.|+|...||+.+++.+|..+...++..++..+|.++.|.|+|++|...+..+.
T Consensus 33 q~i~e~f~lfd~-~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~ 99 (172)
T KOG0028|consen 33 QEIKEAFELFDP-DMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL 99 (172)
T ss_pred hhHHHHHHhhcc-CCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHH
Confidence 578999999999 9999999999999999999999999999999999999999999999999876544
No 32
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.03 E-value=3e-09 Score=64.53 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhC-CCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDLG-LHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
...++..+|...|. +..|.|+.+|+..+|.... .+++.+.++.++..+|.+..|.|+++||..+++.+..|+
T Consensus 55 ~~~~~~~~f~~vD~-d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr 127 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDR-DRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWR 127 (221)
T ss_pred ccHHHHHHHHhhCc-cccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHH
Confidence 45688999999999 9999999999999998554 678999999999999999999999999999999999885
No 33
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.99 E-value=3.4e-09 Score=63.82 Aligned_cols=78 Identities=22% Similarity=0.250 Sum_probs=67.3
Q ss_pred CCCCcHHHH---HHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 10 GLTPEEEQV---KRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 10 ~~~~~~~~l---~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
....+..+| ..+|+.||. +.||+|+..|++..+..+|.+.+.--++.+++..|.|.+|+|+|-||.-+++......
T Consensus 90 F~eFsrkqIk~~~~~Fk~yDe-~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagE 168 (244)
T KOG0041|consen 90 FSEFSRKQIKDAESMFKQYDE-DRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGE 168 (244)
T ss_pred hhHHHHHHHHHHHHHHHHhcc-cccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccc
Confidence 345566666 556899999 9999999999999999999888888999999999999999999999999998877655
Q ss_pred cC
Q 045293 87 LS 88 (89)
Q Consensus 87 ~~ 88 (89)
|+
T Consensus 169 L~ 170 (244)
T KOG0041|consen 169 LQ 170 (244)
T ss_pred cc
Confidence 43
No 34
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.91 E-value=1.3e-08 Score=61.37 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
..+..-...+|+.||. +++|.|+..||..++..+..+..++.++..|+.+|.+++|.|+++|++.+++.+..
T Consensus 60 gd~~~y~~~vF~~fD~-~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~ 131 (193)
T KOG0044|consen 60 GDASKYAELVFRTFDK-NKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQ 131 (193)
T ss_pred CCHHHHHHHHHHHhcc-cCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHH
Confidence 4445556788899999 99999999998888887776777778888899999999999999999988877654
No 35
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.91 E-value=4.7e-08 Score=52.33 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHH-h----CCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKD-L----GLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
.-+..+|+.|.. +.+.++..||+..+.. + ...-++..+..+++.+|.+++|.|+|.||+.++..+.
T Consensus 8 ~~lI~~FhkYaG--~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 8 EKMMLTFHKFAG--EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHcC--CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 356778999985 4569999999999953 2 3334577899999999999999999999999987654
No 36
>PLN02964 phosphatidylserine decarboxylase
Probab=98.87 E-value=2.6e-08 Score=69.06 Aligned_cols=70 Identities=29% Similarity=0.470 Sum_probs=61.4
Q ss_pred CCcHHH---HHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 12 TPEEEQ---VKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 12 ~~~~~~---l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
.+++++ +.++|..+|. +++|.|+.+||..++..++...+++++..+|+.+|.+++|.|+++||..++..+
T Consensus 172 ~pte~e~~fi~~mf~~~D~-DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 172 DPVETERSFARRILAIVDY-DEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCCHHHHHHHHHHHHHhCC-CCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 344454 7899999999 999999999999999888877888899999999999999999999999988763
No 37
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.82 E-value=6.3e-08 Score=53.20 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
.......+|...++ ++|.|+..+.+.++...+ ++.+.+..+|...|.+++|.++++||+-+|.-+.
T Consensus 8 e~~~y~~~F~~l~~--~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP--QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHHHCTSS--STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 34677888988776 579999999999998765 8889999999999999999999999988876553
No 38
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.67 E-value=5.4e-08 Score=41.60 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=12.4
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 55 AKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 55 ~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
++.+|+.+|.|++|.|+++||..+++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 34444444444455555555544443
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.67 E-value=5.1e-08 Score=41.68 Aligned_cols=27 Identities=30% Similarity=0.645 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALK 44 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~ 44 (89)
+++.+|+.||+ |++|.|+.+||..++.
T Consensus 1 E~~~~F~~~D~-d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDK-DGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHST-TSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCC-CCCCcCCHHHHHHHHH
Confidence 57899999999 9999999999999875
No 40
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.66 E-value=2.2e-07 Score=44.47 Aligned_cols=49 Identities=20% Similarity=0.336 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 34 LRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 34 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
++..|++.+|+.++..+++..+..+|+.+|.+++|++..+||..+++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999988754
No 41
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.62 E-value=2.2e-07 Score=61.18 Aligned_cols=68 Identities=29% Similarity=0.399 Sum_probs=62.2
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
...+.++.++|...|. +++|.|...|+.+.++.++..++++++..+++.+|+++++.|+++|+...+.
T Consensus 78 ~~~E~~l~~~F~~iD~-~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDL-EHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred HHhHHHHHHHHhhhcc-ccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 3456688999999999 9999999999999999999999999999999999999999999999977653
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.58 E-value=1.4e-07 Score=40.77 Aligned_cols=30 Identities=30% Similarity=0.651 Sum_probs=23.7
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHH-HhC
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALK-DLG 47 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~-~~~ 47 (89)
+++.+|+.||. +++|.|+.+||..++. ++|
T Consensus 1 ~l~~~F~~~D~-d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDK-DGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-T-TSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCC-CCCCcCcHHHHHHHHHHhcC
Confidence 46788888998 8889999999888887 454
No 43
>PLN02964 phosphatidylserine decarboxylase
Probab=98.58 E-value=4.7e-07 Score=62.95 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhC-CCCcHHH---HHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLG-LHFSGFR---AKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
+++++.|..+|+ +++|.+ +..+++.+| ..+++.+ ++.++..+|.+++|.|+++||+.++...
T Consensus 143 ~elkeaF~lfD~-dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 143 ESACESFDLLDP-SSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHHHHHHHHCC-CCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 567888999999 999986 888899999 5787776 8999999999999999999999998753
No 44
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.58 E-value=6.9e-07 Score=51.90 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
++++++|...|. |++|.|..++|+..+.++|..++++++..++++. .|.|+|.-|+.++-.
T Consensus 32 qEfKEAF~~mDq-nrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGe 92 (171)
T KOG0031|consen 32 QEFKEAFNLMDQ-NRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGE 92 (171)
T ss_pred HHHHHHHHHHhc-cCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHH
Confidence 467899999999 9999999999999999999889998888888754 456888878777643
No 45
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.57 E-value=5e-07 Score=60.26 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=58.7
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHh----CCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKDL----GLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
.+..+|+..|. |++|.|+.+||+.+..-+ ...++.+++.++...+|-+++|.|+++||..+++-..+
T Consensus 548 ~LetiF~~iD~-D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 548 SLETIFNIIDA-DNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hHHHHHHHhcc-CCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 45778999999 999999999999988754 45678899999999999999999999999999876544
No 46
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.56 E-value=5e-07 Score=59.77 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
.......++.+|+.+|. +++|.|+.+||.. +..+|..+|.+++|.|+++||..++..+.+
T Consensus 329 ~~~~~~~l~~aF~~~D~-dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDL-DGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred cChhhHHHHHHHHHhCC-CCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 34456788999999999 9999999999841 577899999999999999999999987765
No 47
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.53 E-value=1.1e-06 Score=58.09 Aligned_cols=66 Identities=23% Similarity=0.298 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCC-CcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 15 EEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLH-FSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 15 ~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
+.+++.+|..+|. +++|.++..++.+.+..+... +....+..++..+|.+.+|+++|.||.+.+..
T Consensus 13 ~~r~~~lf~~lD~-~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 13 DIRIRCLFKELDS-KNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHHHHhcc-CCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 3578999999999 999999999999999988754 66778889999999999999999999988864
No 48
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.49 E-value=2.9e-06 Score=51.26 Aligned_cols=74 Identities=15% Similarity=0.180 Sum_probs=62.4
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCC-CCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGL-HFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
...++.+++.+++.|-.+.+.|.++..+|+.++..... .-+..-+..+|..+|.+++|.|+|.||+..+..+.+
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r 95 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR 95 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC
Confidence 34667899999999977467999999999999998874 445567788999999999999999999998876654
No 49
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=1.8e-06 Score=55.26 Aligned_cols=67 Identities=22% Similarity=0.207 Sum_probs=59.6
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
.+++++..++.+.|. +++|+|+..|++.|+.....+....++.+-|..+|.+.+|.|+|+++...+-
T Consensus 74 e~~~rl~~l~~~iD~-~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDS-DSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred hhHHHHHHHHhhhcC-CCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 367899999999998 9999999999999999877667777888889999999999999999987664
No 50
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.22 E-value=4.6e-06 Score=48.29 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHhC-CCCcHHHHH----HHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKDLG-LHFSGFRAK----RAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~-~~~~~~~~~----~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
.+.-+|+.||- ++++.|...++...+..+. ..++.+++. +++.+.|.+++|++++.+|..++.+
T Consensus 109 K~~YAFkIYDf-d~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 109 KAKYAFKIYDF-DGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhhheeEEeec-CCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 33456788999 9999999999999998774 567777654 4678889999999999999888754
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.18 E-value=3.8e-06 Score=34.57 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=12.8
Q ss_pred HHHHHHhcCCCCCCcccHHHHHH
Q 045293 19 KRYLKRYATDDKDGKLRWNELKV 41 (89)
Q Consensus 19 ~~~f~~~d~~~~~g~i~~~el~~ 41 (89)
+.+|..+|. |++|.|+..|+.+
T Consensus 2 ~~~F~~~D~-d~DG~is~~E~~~ 23 (25)
T PF13202_consen 2 KDAFQQFDT-DGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHTT-TSSSEEEHHHHHH
T ss_pred HHHHHHHcC-CCCCcCCHHHHHH
Confidence 445566666 6666666666554
No 52
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.09 E-value=6.5e-06 Score=33.85 Aligned_cols=25 Identities=40% Similarity=0.530 Sum_probs=22.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 55 AKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 55 ~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
++.+|..+|.+++|.|+++||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4578999999999999999998764
No 53
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.06 E-value=1.9e-06 Score=48.04 Aligned_cols=60 Identities=27% Similarity=0.261 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDL 78 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 78 (89)
..+.=.|..+|. +++|.|+..|++.+...+ ..++..+..++..+|.+++|.|+..|+..+
T Consensus 54 ~~~~W~F~~LD~-n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 54 RVVHWKFCQLDR-NKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHH---T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhHhhhcC-CCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 455556999999 999999999988765533 455667899999999999999999998753
No 54
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.05 E-value=2.2e-05 Score=58.89 Aligned_cols=69 Identities=23% Similarity=0.387 Sum_probs=59.1
Q ss_pred CCcHHHH---HHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCc-------HHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 12 TPEEEQV---KRYLKRYATDDKDGKLRWNELKVALKDLGLHFS-------GFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 12 ~~~~~~l---~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
..+++.+ .-+|+.||+ +.+|.++..+|+.+|+.+|..++ +.+++.++...|++.+|.|+..+|+.+|..
T Consensus 2246 GVtEe~L~EFs~~fkhFDk-ek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDK-EKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred CCCHHHHHHHHHHHHHhch-hhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 4556555 556999999 99999999999999999997763 237899999999999999999999988854
No 55
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.00 E-value=9.8e-05 Score=44.56 Aligned_cols=65 Identities=25% Similarity=0.428 Sum_probs=40.1
Q ss_pred HHHHHhcCCCCCCc-ccHHHHHHHHHHhCCCCcHH-HHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc
Q 045293 20 RYLKRYATDDKDGK-LRWNELKVALKDLGLHFSGF-RAKRAVHYADVNGDGCVDEEEMNDLVKYTVKW 85 (89)
Q Consensus 20 ~~f~~~d~~~~~g~-i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 85 (89)
+++..|+. +++|. |+.++|.+.+......-+.. .++-.|+.+|.+++|.|+.+|+..++......
T Consensus 70 rI~~~f~~-~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 70 RIIDRFDT-DGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE 136 (187)
T ss_pred HHHHHHhc-cCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc
Confidence 34444554 44554 66666665555444333333 66667788888888888888888777766543
No 56
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.95 E-value=1.8e-05 Score=34.03 Aligned_cols=28 Identities=32% Similarity=0.579 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 54 RAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 54 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
+++.+|+.+|.+++|.|+.+||..+++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 4678999999999999999999999873
No 57
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=1.3e-05 Score=51.50 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHH
Q 045293 19 KRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMND 77 (89)
Q Consensus 19 ~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 77 (89)
.+.+...|+ |++|+++..|++.|+.-.+......+++.++...|.+.+|+++++|.+.
T Consensus 244 e~F~~~~Dk-nkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~ 301 (325)
T KOG4223|consen 244 EQFFEFRDK-NKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILE 301 (325)
T ss_pred HHHHHHhhc-CCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhh
Confidence 355667799 9999999999999998777778889999999999999999999999865
No 58
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=97.84 E-value=1.5e-05 Score=49.90 Aligned_cols=65 Identities=18% Similarity=0.238 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh-CCCCc--HHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDL-GLHFS--GFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~-~~~~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
+.+.+..+|.+.|. +.+|+|+..|++++++.- ..++. ..+-+..|...|++++|.|+|+||.--+
T Consensus 99 srrklmviFsKvDV-NtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDV-NTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHhhccc-CccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 34678899999999 999999999999999742 22222 2234456788899999999999995443
No 59
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.76 E-value=0.00038 Score=47.65 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=57.8
Q ss_pred CCCCcHHHH---HHHHHHhcCCCCCCcccHHHHHHHHHHhCC---CCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 10 GLTPEEEQV---KRYLKRYATDDKDGKLRWNELKVALKDLGL---HFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 10 ~~~~~~~~l---~~~f~~~d~~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
....+++++ +..|...| +++|+++..++..++...+. ....++++.++...+.+.+|+|+|++|+.++....
T Consensus 10 ~~~~tq~El~~l~~kF~~~d--~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD--DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLK 87 (627)
T ss_pred cccccHHHHHHHHHHHHhhc--CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhh
Confidence 345667666 45566666 68999999999999987753 33578999999999999999999999999776554
Q ss_pred h
Q 045293 84 K 84 (89)
Q Consensus 84 ~ 84 (89)
.
T Consensus 88 s 88 (627)
T KOG0046|consen 88 S 88 (627)
T ss_pred h
Confidence 4
No 60
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.63 E-value=0.0002 Score=34.35 Aligned_cols=32 Identities=28% Similarity=0.571 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKD 45 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~ 45 (89)
.+++++..+|..+|. +++|.|+..||...+..
T Consensus 22 ~s~~e~~~l~~~~D~-~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDT-DGDGYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTT-SSSSSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccc-CCCCCCCHHHHHHHHHh
Confidence 788999999999999 99999999999988753
No 61
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.49 E-value=0.00061 Score=35.62 Aligned_cols=63 Identities=11% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHhC-C-CCcHHHHHHHHHhcCCC----CCCcccHHHHHHHHHH
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKDLG-L-HFSGFRAKRAVHYADVN----GDGCVDEEEMNDLVKY 81 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~-~-~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~ 81 (89)
+|..+|..+. .+.+.++.++|...|..-. . ..+...+..++..+..+ ..+.+++++|..++..
T Consensus 1 ei~~if~~ys--~~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYS--SDKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHC--TTSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHh--CCCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 4788999994 4678999999999998654 3 46888999999887654 4688999999998853
No 62
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.49 E-value=0.00021 Score=28.85 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=15.5
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 55 AKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 55 ~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
++.+|+.+|.+++|.|++.+|..+++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 34556666666666666666666554
No 63
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.45 E-value=0.00027 Score=28.53 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKD 45 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~ 45 (89)
+++.+|..+|. +++|.|+..++..++..
T Consensus 1 ~~~~~f~~~d~-~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDK-DGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCC-CCCCcEeHHHHHHHHHh
Confidence 36789999999 99999999999988864
No 64
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.00044 Score=49.40 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
-..+.+|..+|+ ...|+++...-+.+|...+ ++...+-.+|...|.|+||+++.+||+-.|.
T Consensus 195 lKY~QlFNa~Dk-trsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 195 LKYRQLFNALDK-TRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hHHHHHhhhccc-ccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 355889999999 9999999999999988655 7788899999999999999999999987664
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.00027 Score=47.36 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=48.2
Q ss_pred CCCcccHHHHHHHHHHh-CCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhccc
Q 045293 30 KDGKLRWNELKVALKDL-GLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWRL 87 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 87 (89)
..+.|+..+|+++.... |..+++..++-+|.-+|.|+||.++.+||+.+++....-|+
T Consensus 401 Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhrgl 459 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHRGL 459 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhccc
Confidence 35678888888888654 77888777888899999999999999999999987776543
No 66
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0025 Score=35.75 Aligned_cols=66 Identities=29% Similarity=0.295 Sum_probs=47.2
Q ss_pred CCcHHHHH-HHHHHhcCCCCCCcccHHHHHHHHHHh------CC-C---CcHHHHHHH----HHhcCCCCCCcccHHHHH
Q 045293 12 TPEEEQVK-RYLKRYATDDKDGKLRWNELKVALKDL------GL-H---FSGFRAKRA----VHYADVNGDGCVDEEEMN 76 (89)
Q Consensus 12 ~~~~~~l~-~~f~~~d~~~~~g~i~~~el~~~l~~~------~~-~---~~~~~~~~~----~~~~d~~~~g~i~~~ef~ 76 (89)
..+.++++ -+|...|- ++++.++.-|+..++... |. . .++.++..+ ++.-|-+++|.|+|.||.
T Consensus 62 ~mtpeqlqfHYF~MHDl-dknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEfl 140 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDL-DKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFL 140 (144)
T ss_pred hCCHHHHhhhhhhhhcc-CcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHH
Confidence 34555553 45788899 999999999998888643 21 1 235555554 555677899999999997
Q ss_pred HH
Q 045293 77 DL 78 (89)
Q Consensus 77 ~~ 78 (89)
..
T Consensus 141 K~ 142 (144)
T KOG4065|consen 141 KR 142 (144)
T ss_pred hh
Confidence 64
No 67
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.0029 Score=43.43 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=50.4
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 19 KRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 19 ~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
...|+-..+ |..|+|+..--+.++... .++-.++..||...|.+.+|.++..|||..+.
T Consensus 234 vnQFrtvQp-Dp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 234 VNQFRTVQP-DPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HhhhhcccC-CcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 556777788 899999998888877643 47778899999999999999999999999875
No 68
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.96 E-value=0.0014 Score=32.49 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 55 AKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 55 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
++.+|..+|.+++|.|+.+||..+++...
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 67899999999999999999999987654
No 69
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.77 E-value=0.024 Score=33.26 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=48.2
Q ss_pred HHHHHHHh---cCCCCCCcccHHHHHHHHHHhC---CCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 18 VKRYLKRY---ATDDKDGKLRWNELKVALKDLG---LHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 18 l~~~f~~~---d~~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
|+.+|..| .. .+...++...|..+++..+ ..++...+..+|..+-..+...|+|++|..++..+.
T Consensus 1 L~~~F~~f~~fG~-~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 1 LEAVFKAFASFGK-KNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHHCSST-STSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-CccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 35566666 34 4566899999999999875 357788899999987666667799999999887554
No 70
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.63 E-value=0.018 Score=39.21 Aligned_cols=67 Identities=16% Similarity=0.333 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHh-CCCCc-------------------------------------------
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDL-GLHFS------------------------------------------- 51 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~-~~~~~------------------------------------------- 51 (89)
.++..-|+.+|. .+.|+|+......++..+ +.+++
T Consensus 464 sdL~~eF~~~D~-~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 464 SDLEDEFRKYDP-KKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hHHHHHHHhcCh-hhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 456778999999 999999988888777643 22211
Q ss_pred ---HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 52 ---GFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 52 ---~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
.+.+..+|..+|.|+.|.|+.+||...+.-..
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~ 577 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLS 577 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHH
Confidence 12345578889999999999999988876544
No 71
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.51 E-value=0.0069 Score=39.62 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=52.3
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
+.+.+-++-.|++|+. +-||.+...+|..++.. ..++..-.+..+|...+...+++|.+.+|..++.
T Consensus 292 ~~t~~iiq~afk~f~v-~eDg~~ge~~ls~ilq~-~lgv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 292 PVTPVIIQYAFKRFSV-AEDGISGEHILSLILQV-VLGVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred CCcHHHHHHHHHhccc-ccccccchHHHHHHHHH-hcCcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 4456677888999998 88999888888877764 3345555677788888888889999999988764
No 72
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0024 Score=43.05 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=43.6
Q ss_pred CCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 29 DKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
+.+|.|+..|..-++.-+. .++......|+++|.|++|.|+.+||..+.+-+..
T Consensus 211 g~~GLIsfSdYiFLlTlLS--~p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~s 264 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLLS--IPERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRS 264 (489)
T ss_pred CCCCeeeHHHHHHHHHHHc--cCcccceeeeeeeecCCCCcccHHHHHHHHHHHHh
Confidence 4689999999887766555 56667788899999999999999999887755443
No 73
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.21 E-value=0.022 Score=30.26 Aligned_cols=35 Identities=14% Similarity=0.319 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
...+++++.++++.+|. +++|.|+..||...+..+
T Consensus 46 ~k~t~~ev~~m~~~~D~-d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 46 SKLQDAEIAKLMEDLDR-NKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred CCCCHHHHHHHHHHhcC-CCCCCCcHHHHHHHHHHH
Confidence 34678999999999999 999999999998877654
No 74
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.16 E-value=0.011 Score=38.98 Aligned_cols=64 Identities=16% Similarity=0.085 Sum_probs=54.1
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
.-...+.=.|.++|. +.++.++..|++.+-. .-.+.-++.+|...|...+|.|+-+|++.++.+
T Consensus 247 ~CKds~gWMFnklD~-N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDT-NYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred chhhhhhhhhhcccc-ccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 445788888999999 9999999999886543 345678999999999999999999999988754
No 75
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.08 E-value=0.02 Score=30.62 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
.+..++..++..+|. +++|.|+..||..++..+
T Consensus 50 ~~~~~v~~i~~elD~-n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 50 KDPMLVDKIMNDLDS-NKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred cCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHH
Confidence 356789999999999 999999999999888755
No 76
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.06 E-value=0.023 Score=39.74 Aligned_cols=67 Identities=19% Similarity=0.140 Sum_probs=59.4
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 19 KRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 19 ~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
+.-|..+|. ++.|.++..++.++++..+..++.+.+.+++.+.+..-+|.+...||..++..+...+
T Consensus 596 ~~rf~~lD~-~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 596 KTRFAFLDA-DKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred HHHHHhhcc-hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 445778898 8999999999999999888899999999999999988899999999999998877654
No 77
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=96.06 E-value=0.024 Score=30.14 Aligned_cols=34 Identities=21% Similarity=0.463 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
..+++++..+|..+|. +++|.|+..+|..++..+
T Consensus 48 ~~s~~~v~~i~~~~D~-d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 48 QKDADAVDKIMKELDE-NGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred CCCHHHHHHHHHHHCC-CCCCcCcHHHHHHHHHHH
Confidence 3567889999999999 999999999999888754
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.066 Score=38.93 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCC-CCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 15 EEQVKRYLKRYATD-DKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 15 ~~~l~~~f~~~d~~-~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
.++-...+..|+.. .+.|+|+...-+.++...+ ++...+-++|...|.|.||+++..||.-+|+-+.
T Consensus 12 ~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~ 79 (1118)
T KOG1029|consen 12 DEERQKHDAQFGQLKPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIK 79 (1118)
T ss_pred hHHHHHHHHHHhccCCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHH
Confidence 34444444445420 3678999999999988766 6777889999999999999999999977776443
No 79
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.03 E-value=0.0098 Score=31.78 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhC
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLG 47 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~ 47 (89)
..+++++..++..+|. +++|.|+..+|..++...+
T Consensus 47 ~~s~~ei~~~~~~~D~-~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 47 QKDPMAVDKIMKDLDQ-NRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred cccHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHHH
Confidence 4567889999999999 9999999999998887654
No 80
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.03 E-value=0.032 Score=32.67 Aligned_cols=68 Identities=18% Similarity=0.310 Sum_probs=50.9
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHhCCCCc-HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcccC
Q 045293 20 RYLKRYATDDKDGKLRWNELKVALKDLGLHFS-GFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWRLS 88 (89)
Q Consensus 20 ~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~-~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 88 (89)
++-..|.. ++.|.++.++|-..+.-+....+ +-.+.-.|+-+|-++++.|.-++....+....+.++|
T Consensus 75 ri~e~FSe-DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs 143 (189)
T KOG0038|consen 75 RICEVFSE-DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELS 143 (189)
T ss_pred HHHHHhcc-CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCC
Confidence 33445566 99999999999888876543222 3344446677889999999999999999888887776
No 81
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.00 E-value=0.0053 Score=40.16 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=49.5
Q ss_pred HHHHHHHHhcCCCCCCcccHHH---HHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 17 QVKRYLKRYATDDKDGKLRWNE---LKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~e---l~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
.+.-.|..+|+ |+++.|...| |+.++..-. -.....+.+++..|.++|..|++.|+..++....
T Consensus 334 vv~w~F~qLdk-N~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 334 VVHWYFNQLDK-NSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred eeeeeeeeecc-cccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 44556899999 9999999888 455554322 3455678899999999999999999999886543
No 82
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.92 E-value=0.03 Score=29.81 Aligned_cols=33 Identities=21% Similarity=0.427 Sum_probs=28.5
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
..+.++..+++.+|. +++|.|+..||..++..+
T Consensus 49 ~~~~~~~~ll~~~D~-d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 49 KDPGVLDRMMKKLDL-NSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred CCHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHH
Confidence 456788999999999 999999999999888754
No 83
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.89 E-value=0.033 Score=26.69 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=26.4
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
...++....+|+..|+ .++|.+..+|+...++.+
T Consensus 17 ~~~~~yA~~LFq~~D~-s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 17 EMDDEYARQLFQECDK-SQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp ---HHHHHHHHHHH-S-SSSSEBEHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHhcc-cCCCCccHHHHHHHHHHh
Confidence 4556778889999999 999999999999887754
No 84
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=95.83 E-value=0.038 Score=39.65 Aligned_cols=70 Identities=23% Similarity=0.359 Sum_probs=59.9
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
....+.-+..+|..+|+ +++|.++..+...++..+...++...+..++++.+..+++++.+++|..+...
T Consensus 131 ~~~~~~wi~~~~~~ad~-~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~ 200 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADK-NKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKE 200 (746)
T ss_pred cchHHHHHHHHHHHHcc-ccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHh
Confidence 33444566788999999 99999999999999999988899999999999998888999999999887654
No 85
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=95.79 E-value=0.026 Score=30.15 Aligned_cols=30 Identities=23% Similarity=0.419 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
+++..+++.+|. |++|.|+..||..++..+
T Consensus 47 ~~v~~mi~~~D~-d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDV-NQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCC-CCCCCCcHHHHHHHHHHH
Confidence 789999999999 999999999998888754
No 86
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.71 E-value=0.048 Score=28.95 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
...+++++.++++..|+ +++|.|+..+|..++..+
T Consensus 46 ~~~~~~~v~~~i~~~D~-n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 46 EIKEQEVVDKVMETLDS-DGDGECDFQEFMAFVAMV 80 (88)
T ss_pred CCCCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHH
Confidence 34677889999999999 999999999998887654
No 87
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=95.68 E-value=0.039 Score=25.91 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVAL 43 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l 43 (89)
...+.+.+..+|..++. +++|.|+..+|..++
T Consensus 31 ~~~~~~~~~~~~~~~~~-~~~~~l~~~ef~~~~ 62 (63)
T cd00051 31 EGLSEEEIDEMIREVDK-DGDGKIDFEEFLELM 62 (63)
T ss_pred CCCCHHHHHHHHHHhCC-CCCCeEeHHHHHHHh
Confidence 45667788889999999 999999999987654
No 88
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=95.68 E-value=0.028 Score=43.44 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=48.4
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 21 YLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 21 ~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
.|+.||+ ++.|.|+..+|..++.. ..++++++++-++.-...+.+..++|++|+.-+
T Consensus 4062 tfkeydp-dgkgiiskkdf~kame~-~k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDP-DGKGIISKKDFHKAMEG-HKHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCC-CCCccccHHHHHHHHhc-cccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 4677899 99999999999998874 346788899999988888888999999998643
No 89
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.58 E-value=0.036 Score=29.66 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
..+++++..+|..+|. +++|.|+.++|..++..+
T Consensus 40 ~~~~~ev~~i~~~~d~-~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 40 GLPQTLLAKIWNLADI-DNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCHHHHHHHHHHhcC-CCCCCcCHHHHHHHHHHH
Confidence 4677889999999999 999999999999888643
No 90
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=95.57 E-value=0.05 Score=28.77 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
+++++..+|..+|. +++|.|+.++|..++..+
T Consensus 49 ~~~~v~~i~~~~D~-d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 49 NQKAIDKIFEDLDT-NQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred CHHHHHHHHHHcCC-CCCCcCcHHHHHHHHHHH
Confidence 37889999999999 999999999998877644
No 91
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=95.56 E-value=0.05 Score=26.63 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKD 45 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~ 45 (89)
.+.+++..+|..+|. +++|.|+..+|..++..
T Consensus 30 ~~~~~~~~i~~~~d~-~~~g~i~~~ef~~~~~~ 61 (67)
T cd00052 30 LPRSVLAQIWDLADT-DKDGKLDKEEFAIAMHL 61 (67)
T ss_pred CCHHHHHHHHHHhcC-CCCCcCCHHHHHHHHHH
Confidence 467888999999999 99999999999887754
No 92
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=95.33 E-value=0.048 Score=30.55 Aligned_cols=30 Identities=23% Similarity=0.409 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALK 44 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~ 44 (89)
.+..+..+|..+|. +++|.|+..|+..++.
T Consensus 78 ~e~~~~~f~~~~D~-n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 78 NEHCIKPFFESCDL-DKDGSISLDEWCYCFI 107 (116)
T ss_pred hHHHHHHHHHHHCC-CCCCCCCHHHHHHHHh
Confidence 34566778999999 9999999999999883
No 93
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.28 E-value=0.22 Score=29.86 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCC-----------------------------------------------
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKDLGLH----------------------------------------------- 49 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~----------------------------------------------- 49 (89)
.|++-..-||. |+||.|..-|--+.++.+|.+
T Consensus 8 ~LQqHvaFFDr-d~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDR-DKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCC-CCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 34444455788 999999988877777777655
Q ss_pred ------CcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 50 ------FSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 50 ------~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
+..+..+.+|..++..+.+.+++.|...+++.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 34567888888888777788898888887764
No 94
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.27 E-value=0.059 Score=29.61 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=29.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 10 GLTPEEEQVKRYLKRYATDDKDGKLRWNELKVALK 44 (89)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~ 44 (89)
...++.+.+..++...|. +++|.++..||..++.
T Consensus 37 ~S~L~~~~L~~IW~LaD~-~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 37 KSGLPRDVLAQIWNLADI-DNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HTTSSHHHHHHHHHHH-S-SSSSEEEHHHHHHHHH
T ss_pred HcCCCHHHHHHHHhhhcC-CCCCcCCHHHHHHHHH
Confidence 346778999999999999 9999999999998776
No 95
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.13 E-value=0.14 Score=35.06 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=39.2
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHh----cCCCCCCcccHHHHHHHHHH
Q 045293 22 LKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHY----ADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 22 f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~----~d~~~~g~i~~~ef~~~~~~ 81 (89)
|..+|+ +++|.|+.++++..-- ..++..-++++|.. .....+|+++|++|+.++..
T Consensus 284 FweLD~-Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA 343 (493)
T KOG2562|consen 284 FWELDT-DHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA 343 (493)
T ss_pred Hhhhcc-ccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH
Confidence 666788 9999999998875432 23456667888873 23346788999988877654
No 96
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=94.98 E-value=0.1 Score=27.27 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=28.6
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
.+.+++..++..+|. +++|.|+.++|..++...
T Consensus 48 ~~~~ei~~i~~~~d~-~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 48 KDPEAVDKIMKDLDV-NKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCHHHHHHHHHHhcc-CCCCcCcHHHHHHHHHHH
Confidence 457889999999999 999999999999888654
No 97
>PF14658 EF-hand_9: EF-hand domain
Probab=94.94 E-value=0.11 Score=26.23 Aligned_cols=34 Identities=15% Similarity=0.472 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKD-GKLRWNELKVALKD 45 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~-g~i~~~el~~~l~~ 45 (89)
..+++.++..+...+|+ ++. |.|+.++|..+++.
T Consensus 30 ~~p~e~~Lq~l~~elDP-~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 30 RSPEESELQDLINELDP-EGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCCcHHHHHHHHHHhCC-CCCCceEeHHHHHHHHHH
Confidence 36778899999999999 777 99999999998864
No 98
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=94.76 E-value=0.13 Score=32.74 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMND 77 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 77 (89)
.+.++.=..+|. +++|.++.+|+...+--.+......++..++..-|.+++..++.++...
T Consensus 281 dRkkEFeElIDs-NhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 281 DRKKEFEELIDS-NHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHHHHhhc-CCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 344444456799 9999999999998876555566667888888888999999999998754
No 99
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.67 E-value=0.18 Score=37.09 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcH-----HHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSG-----FRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
.++++.|..+++ ...|.++.+++..++..+|.+.-. .++..++...+.+..|++++.+|...+..
T Consensus 747 ~ElrAle~~~~~-~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDK-IDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHH-hhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 467899999999 888899999999999999876653 23344445556666689999999887754
No 100
>PLN02228 Phosphoinositide phospholipase C
Probab=94.40 E-value=0.57 Score=33.13 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCC--CCcHHHHHHHHHhcCCC----CCCcccHHHHHHHHHH
Q 045293 10 GLTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGL--HFSGFRAKRAVHYADVN----GDGCVDEEEMNDLVKY 81 (89)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~~~ 81 (89)
....+.+++..+|..+.. + +.++.++|...|...+. ..+...+..++..+... ..|.++.+.|..++..
T Consensus 18 ~~~~~~~ei~~if~~~s~-~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 18 KTREPPVSIKRLFEAYSR-N--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCCCcHHHHHHHHHhcC-C--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 455578999999999865 3 57999999999987642 34566788888877543 3467999999888753
No 101
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.12 E-value=0.24 Score=26.65 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhC
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLG 47 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~ 47 (89)
..+..+..++...|. |++|.|+..||-..+..+.
T Consensus 45 ~d~~~vd~im~~LD~-n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 45 NDPMAVDKIMKDLDD-CRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCHHHHHHHHHHhCC-CCCCcCcHHHHHHHHHHHH
Confidence 356788999999999 9999999999998887543
No 102
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.1 Score=34.87 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=42.1
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHH-HhcCCCCCCcccHHHH
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAV-HYADVNGDGCVDEEEM 75 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~-~~~d~~~~g~i~~~ef 75 (89)
..+.+++++.|+.+|+ .+.|+|+.+-++.++...+..+++...-.+. ...|+..-|.|-.++|
T Consensus 305 ~~~s~q~rR~f~a~d~-~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~ 368 (449)
T KOG2871|consen 305 ENPSEQLRRNFHAYDP-EDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDF 368 (449)
T ss_pred CCCCHHHHhhhhccCc-cCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccc
Confidence 3346899999999999 9999999999999888777555543322222 3345444444443333
No 103
>PLN02230 phosphoinositide phospholipase C 4
Probab=93.43 E-value=1 Score=32.06 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=50.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCC---CCcHHHHHHHHHhcCC-------CCCCcccHHHHHHHH
Q 045293 10 GLTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGL---HFSGFRAKRAVHYADV-------NGDGCVDEEEMNDLV 79 (89)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~ 79 (89)
....+..++..+|..|.. ++ +.++.++|...|...+. ..+...+..++..+.. -..+.++.+.|..++
T Consensus 23 ~~~~p~~ei~~lf~~~s~-~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL 100 (598)
T PLN02230 23 TESGPVADVRDLFEKYAD-GD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYL 100 (598)
T ss_pred ccCCCcHHHHHHHHHHhC-CC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHH
Confidence 445577899999999965 44 89999999999987652 2356667777754321 123569999998877
Q ss_pred HH
Q 045293 80 KY 81 (89)
Q Consensus 80 ~~ 81 (89)
..
T Consensus 101 ~s 102 (598)
T PLN02230 101 FS 102 (598)
T ss_pred cC
Confidence 43
No 104
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.05 E-value=0.35 Score=33.22 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=54.2
Q ss_pred CCcHHHHHHHHH----HhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 12 TPEEEQVKRYLK----RYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 12 ~~~~~~l~~~f~----~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
..+..-+.++|. .+-. ..+|.++.++|.-.+.+....-+..-++=+|+-+|.+++|.++.+|...++....
T Consensus 307 tlt~~ivdRIFs~v~r~~~~-~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~ 381 (493)
T KOG2562|consen 307 TLTERIVDRIFSQVPRGFTV-KVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQL 381 (493)
T ss_pred chhhHHHHHHHhhcccccee-eecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHH
Confidence 344445577887 2223 4678899999998888877667777788899999999999999999887776544
No 105
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=92.92 E-value=0.47 Score=31.44 Aligned_cols=66 Identities=15% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHh-CCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDL-GLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
+.++..|..||. +++|.++..|.-..+.-+ +...+..-++-.|+.++...||.+.-.+|..+++..
T Consensus 259 d~l~~~f~LFde-~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~ 325 (412)
T KOG4666|consen 259 DKLAPTFMLFDE-GTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVV 325 (412)
T ss_pred hhhhhhhheecC-CCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHh
Confidence 677889999999 999998887765555433 555667788889999999999988888887777654
No 106
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.68 E-value=0.95 Score=31.75 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=10.4
Q ss_pred HHHHhcCCCCCCcccHHHHHHHH
Q 045293 57 RAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 57 ~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
.+|..+|+.++|.+++++|..++
T Consensus 112 ~aFqlFDr~~~~~vs~~~~~~if 134 (694)
T KOG0751|consen 112 VAFQLFDRLGNGEVSFEDVADIF 134 (694)
T ss_pred HHHHHhcccCCCceehHHHHHHH
Confidence 34444444444444444444444
No 107
>PLN02222 phosphoinositide phospholipase C 2
Probab=92.47 E-value=1.3 Score=31.50 Aligned_cols=69 Identities=12% Similarity=0.132 Sum_probs=51.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCC--CCcHHHHHHHHHhcCC-CCCCcccHHHHHHHHHH
Q 045293 10 GLTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGL--HFSGFRAKRAVHYADV-NGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~g~i~~~ef~~~~~~ 81 (89)
....+..++..+|..+.. ++.++.++|...|...+. ..+.+.+..++..+.. ...+.++++.|..++..
T Consensus 19 ~~~~~~~ei~~if~~~~~---~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 19 TASEAPREIKTIFEKYSE---NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred ccCCCcHHHHHHHHHhcC---CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 344466799999999864 369999999999987653 3466778888876532 23566999999888753
No 108
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=92.34 E-value=0.49 Score=33.06 Aligned_cols=64 Identities=6% Similarity=0.095 Sum_probs=41.2
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCC------CCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGL------HFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~------~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
+......+|..||+ .++|.++.+++..++.+... +++.+-++..|.. ...-.++|.+|.+++..
T Consensus 106 pDal~~~aFqlFDr-~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~---~~~r~~ny~~f~Q~lh~ 175 (694)
T KOG0751|consen 106 PDALFEVAFQLFDR-LGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD---IRKRHLNYAEFTQFLHE 175 (694)
T ss_pred chHHHHHHHHHhcc-cCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhh---HHHHhccHHHHHHHHHH
Confidence 34455788999999 99999999999999986532 2233334443322 12234666776666643
No 109
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=92.29 E-value=0.18 Score=28.27 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=23.0
Q ss_pred CCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 49 HFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 49 ~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
.+++++++.+|.++-.+..|+|.|.||+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 46788999999999999999999999987554
No 110
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.87 E-value=0.95 Score=30.60 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=26.1
Q ss_pred CCCCcHHHHHHHHHhcCCCCCCcccHHHHH
Q 045293 47 GLHFSGFRAKRAVHYADVNGDGCVDEEEMN 76 (89)
Q Consensus 47 ~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 76 (89)
+...-...+..+|+.+|.+++|.|+.+||.
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 445556789999999999999999999996
No 111
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=91.55 E-value=1.3 Score=23.80 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh-------CC----CCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 15 EEQVKRYLKRYATDDKDGKLRWNELKVALKDL-------GL----HFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 15 ~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~-------~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
+++++.+|..+. |++|.++...|...|.++ |. ...+..++.+|.... ....|+.++|+..+.
T Consensus 2 ~dKyRylFslis--d~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 2 EDKYRYLFSLIS--DSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHHHS---TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred hHHHHHHHHHHc--CCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 467889999884 789999999888887653 22 235667788887752 345699999998775
No 112
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.36 E-value=0.34 Score=24.69 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=36.5
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCC-------CCCCcccHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADV-------NGDGCVDEEEMND 77 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~ 77 (89)
.+.+++...|+.+ . ++.++|+..+|++.|.. +.++-+...+.. ...|.++|..|+.
T Consensus 3 ~s~eqv~~aFr~l-A-~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-A-GGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-C-TSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-H-cCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 4678999999999 4 67899999999987541 112333333221 1236788988865
No 113
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=90.59 E-value=0.59 Score=30.81 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=40.5
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHH-HhC--CCCc--HHH-----------HHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 21 YLKRYATDDKDGKLRWNELKVALK-DLG--LHFS--GFR-----------AKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 21 ~f~~~d~~~~~g~i~~~el~~~l~-~~~--~~~~--~~~-----------~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
.|..+|. +++|+++..|+..++. .+. ..+. ++. -..+++..|.+.+..|+.+||+....
T Consensus 249 FF~LHD~-NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 249 FFALHDL-NSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred heeeecc-CCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 4566677 8999999999887764 221 1111 111 13367889999999999999987653
No 114
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.45 E-value=0.12 Score=38.05 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 15 EEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 15 ~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
...+.++|...|. +.+|.|+..+...++.. .+++...+..+|...+..+.|.+++++|+..+-
T Consensus 282 ~~~~~~if~q~d~-~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 282 KQKYSKIFSQVDK-DNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred HHHHHHHHHhccc-cCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhh
Confidence 3455678999999 99999999999988876 568888899999999999999999999876654
No 115
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=89.64 E-value=0.71 Score=33.02 Aligned_cols=57 Identities=21% Similarity=0.166 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEE 74 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~e 74 (89)
.-+.++|+.+|. +.+|.|+..++...|..+-.+-..+.+.-+++.++.+++ ..+.++
T Consensus 555 ~~~~rlF~l~D~-s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 555 IFLERLFRLLDD-SMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHHhccc-CCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 344778888888 888888888888888766544555567777888777766 555444
No 116
>PLN02952 phosphoinositide phospholipase C
Probab=89.43 E-value=5 Score=28.81 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=46.7
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCC--CCcHHHHHHHHHhc----C---CCCCCcccHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGL--HFSGFRAKRAVHYA----D---VNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~----d---~~~~g~i~~~ef~~~~~ 80 (89)
.+..++..+|..+.. +.+.++.++|...|...+. ..+...+..++..+ . ..+...++++.|..++.
T Consensus 35 ~~r~ei~~lf~~~~~--~~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 35 EPPDDVKDVFCKFSV--GGGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred CChHHHHHHHHHHhC--CCCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 367899999999975 3468999999999987643 35566666665433 1 11234589999988875
No 117
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=88.67 E-value=0.85 Score=32.40 Aligned_cols=60 Identities=15% Similarity=0.078 Sum_probs=41.1
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCC-cH-HHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHF-SG-FRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~-~~-~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
+.+..+|..||. ++||.++..|++.+.......+ .. .+.. .......|.++++.|...+.
T Consensus 315 ~Fl~~~f~~~D~-d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~----~t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 315 RFLVDVFEKFDR-DNDGALSPEELKDLFSTAPGSPWTSSPYKD----STVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHhccC-CCCCCcCHHHHHHHhhhCCCCCCCCCcccc----cceecccceeehhhHHHHHH
Confidence 466888999999 9999999999999998764322 10 0000 01123678888888877554
No 118
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=88.51 E-value=0.55 Score=23.99 Aligned_cols=39 Identities=13% Similarity=0.054 Sum_probs=24.7
Q ss_pred hCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 46 LGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 46 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
+...++...+..+...++.-..++|+-++|+..++.+..
T Consensus 18 l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 18 LSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVG 56 (70)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 333455555555555554445677888888888877654
No 119
>PLN02223 phosphoinositide phospholipase C
Probab=88.40 E-value=7.1 Score=27.69 Aligned_cols=70 Identities=6% Similarity=-0.062 Sum_probs=49.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHH---HHhC--CCCcHHHHHHHHHhcCCCC--------CCcccHHHHH
Q 045293 10 GLTPEEEQVKRYLKRYATDDKDGKLRWNELKVAL---KDLG--LHFSGFRAKRAVHYADVNG--------DGCVDEEEMN 76 (89)
Q Consensus 10 ~~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l---~~~~--~~~~~~~~~~~~~~~d~~~--------~g~i~~~ef~ 76 (89)
....+.+.++.+|..+. .+.|.++...+.+.+ ...+ ...+.++++.++..+-... .+.++.+.|.
T Consensus 10 ~~~~~p~~v~~~f~~~~--~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~ 87 (537)
T PLN02223 10 HPANQPDLILNFFGNEF--HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLN 87 (537)
T ss_pred CCCCCcHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHH
Confidence 34456789999999995 467889999999988 3332 3456667777776543222 2569999998
Q ss_pred HHHHH
Q 045293 77 DLVKY 81 (89)
Q Consensus 77 ~~~~~ 81 (89)
.++..
T Consensus 88 ~~L~s 92 (537)
T PLN02223 88 EFLFS 92 (537)
T ss_pred HHhcC
Confidence 88753
No 120
>PLN02952 phosphoinositide phospholipase C
Probab=87.73 E-value=3.2 Score=29.74 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=42.7
Q ss_pred CCCCcccHHHHHHHHHHhC--CCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 29 DKDGKLRWNELKVALKDLG--LHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
++.|.++..+|..+.+.+. ...+..++..+|..+..+ ++.++.++|..++...++
T Consensus 12 ~~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 12 NDSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred ccCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 3568999999988877664 233678999999998654 467999999999987665
No 121
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=86.42 E-value=4.5 Score=28.96 Aligned_cols=78 Identities=18% Similarity=0.082 Sum_probs=46.8
Q ss_pred CCCCCCCC-CCCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-hCCCCcHHHHHH---HHHhcCCC--CCCcccHHH
Q 045293 2 PLWVPKGM-GLTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKD-LGLHFSGFRAKR---AVHYADVN--GDGCVDEEE 74 (89)
Q Consensus 2 ~~~~~~~~-~~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~---~~~~~d~~--~~g~i~~~e 74 (89)
|+|.+..+ -.+-....+.++|+..|. +.+|.++..|+-..-+. ++.+++..++.. .....-++ .+..++...
T Consensus 180 PLyda~~qelkp~~v~al~RIFki~D~-d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~G 258 (625)
T KOG1707|consen 180 PLYDAEEQELKPRCVKALKRIFKISDS-DNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPG 258 (625)
T ss_pred cccccccccccHHHHHHHHHHHhhhcc-ccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccc
Confidence 55555543 222233567888888999 99999999998776654 355666554444 33333222 233456666
Q ss_pred HHHHHH
Q 045293 75 MNDLVK 80 (89)
Q Consensus 75 f~~~~~ 80 (89)
|..+..
T Consensus 259 FLfL~~ 264 (625)
T KOG1707|consen 259 FLFLNT 264 (625)
T ss_pred hHHHHH
Confidence 665543
No 122
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=86.36 E-value=1.5 Score=27.23 Aligned_cols=29 Identities=21% Similarity=0.298 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 54 RAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 54 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
.+..+|+.+|.+.||.|++.|...+|-++
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL 128 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKL 128 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHh
Confidence 45668999999999999999999888654
No 123
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=85.79 E-value=1.4 Score=22.71 Aligned_cols=30 Identities=7% Similarity=0.081 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 54 RAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 54 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
+|..+|..+.. +.+.|+.++|..+++..++
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~ 30 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQG 30 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhc
Confidence 46677777754 5677888888888876554
No 124
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=84.62 E-value=6.7 Score=23.67 Aligned_cols=67 Identities=18% Similarity=0.155 Sum_probs=45.5
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCC-----Cc--HHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLH-----FS--GFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~-----~~--~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
...+++.++|.++++ .+.+.++..|+.+.++.--.. .. .-|...++... .+.+|.+..+....++-.
T Consensus 93 Fvp~kFe~iF~kya~-~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vYDG 166 (174)
T PF05042_consen 93 FVPQKFEEIFSKYAK-TGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVYDG 166 (174)
T ss_pred CCHHHHHHHHHHhCC-CCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhcch
Confidence 345789999999998 888999999999988742111 11 22333333333 466899998887766543
No 125
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=84.40 E-value=1.7 Score=25.14 Aligned_cols=52 Identities=17% Similarity=0.034 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCC-------CCCCcccHHHHHHHHHHHHh
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYADV-------NGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-------~~~g~i~~~ef~~~~~~~~~ 84 (89)
-+.|+..||.+.-.-+. .+...++.+++++.. +.++.|+|+.|..+|+.-..
T Consensus 5 ~~~lsp~eF~qLq~y~e--ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe 63 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSE--YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLE 63 (138)
T ss_dssp -S-S-HHHHHHHHHHHH--H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT
T ss_pred eeccCHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHc
Confidence 36788888887665332 345567777777643 23457999999998875443
No 126
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.55 E-value=3.4 Score=28.30 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=42.7
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHH
Q 045293 19 KRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMND 77 (89)
Q Consensus 19 ~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 77 (89)
.++|-.+.+ -+|+|+...-+..+. ...+++..+-++|+..|.+.+|.++-+||.-
T Consensus 447 de~fy~l~p--~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 447 DEIFYTLSP--VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred Hhhhhcccc--cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 445544443 578888877776665 4568888899999999999999999999953
No 127
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=80.71 E-value=0.71 Score=28.55 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=37.2
Q ss_pred CCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 29 DKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
..+|+++..|+.-+-. -..+.+..+...|...|.+++|.|+.+|+..++
T Consensus 200 p~d~~~sh~el~pl~a--p~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 200 PIDGYLSHTELAPLRA--PLIPMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred CccccccccccccccC--CcccHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 3579999988763221 223446678889999999999999999997766
No 128
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=79.40 E-value=5 Score=21.42 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=27.2
Q ss_pred CCCcccHHHHHHHHHHhC--CCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLG--LHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
.||.++..|...+-..+. .+++..+...++..+........++.+|...+.
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 366677666554443221 245555666665555444344456666655554
No 129
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=79.26 E-value=8.8 Score=21.40 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=35.9
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcC
Q 045293 20 RYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYAD 63 (89)
Q Consensus 20 ~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 63 (89)
..|-.+.. .++...+..+++.+|..+|.....+.++.++..+.
T Consensus 5 aAYLL~~l-gGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 5 AAYLLAVL-GGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHh-cCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 44556666 67778899999999999999999999999998874
No 130
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=79.01 E-value=19 Score=27.57 Aligned_cols=66 Identities=11% Similarity=0.102 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhC----------CCCcHHHHHHHHHhcCCC----CCCcccHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDLG----------LHFSGFRAKRAVHYADVN----GDGCVDEEEMNDLV 79 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~----------~~~~~~~~~~~~~~~d~~----~~g~i~~~ef~~~~ 79 (89)
+..++.++|..+.. ++.-+++..+|..+|..-. .......+..++..+..+ .+|.++.+.|+..+
T Consensus 219 pR~eie~iF~ki~~-~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 219 PRPEIEEIFRKISG-KKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred CchhHHHHHHHhcc-CCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 34678899999877 6778999999999997532 234567889999998776 45889999998776
Q ss_pred H
Q 045293 80 K 80 (89)
Q Consensus 80 ~ 80 (89)
.
T Consensus 298 ~ 298 (1189)
T KOG1265|consen 298 M 298 (1189)
T ss_pred h
Confidence 4
No 131
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.49 E-value=2 Score=31.91 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=55.4
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
........+|+..|. .++|.|+..+-...+... .+....+-++|...|..+.|.++..+|...++...
T Consensus 8 ~~q~~~~~~~~~~d~-~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva 75 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADP-QGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVA 75 (847)
T ss_pred CccchHHHhhhccCc-ccCCcccHHHhhhhhhcc--ccchhhhhccccccccccCCccccccccccchHhh
Confidence 334667889999999 999999999888777643 47777788899999999889999999988776544
No 132
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=77.24 E-value=4 Score=27.46 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHhC---CCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKDLG---LHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
+|+.+|..+-. +.++......+..+-..+. .++=..++-.||..+|.+.++.++..|...+..
T Consensus 212 RL~dWF~~lhe-~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 212 RLRDWFKALHE-DSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred HHHHHHHHHHh-hhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc
Confidence 56778887644 4444444444433322221 122256788999999999999999999877654
No 133
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=77.22 E-value=9.9 Score=20.84 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCC---CCCCcccHHHHHHHHHHHHhc
Q 045293 18 VKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADV---NGDGCVDEEEMNDLVKYTVKW 85 (89)
Q Consensus 18 l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~---~~~g~i~~~ef~~~~~~~~~~ 85 (89)
+..=|..+ ..+|.|+...|..++ |..-+.+-+.++|..+-+ -....|+.+|+..++..+...
T Consensus 32 VE~RFd~L---a~dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD~ 96 (100)
T PF08414_consen 32 VEKRFDKL---AKDGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISDQ 96 (100)
T ss_dssp HHHHHHHH----BTTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH--
T ss_pred HHHHHHHh---CcCCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhcc
Confidence 33334444 448999999999877 444566666777755422 224679999999998877643
No 134
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=76.87 E-value=7.6 Score=19.37 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=31.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCC
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNG 66 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 66 (89)
.++.++...+...+...+..+++..+...+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 5567889999999987788899999999999887654
No 135
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=76.79 E-value=7.4 Score=19.16 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=32.6
Q ss_pred CcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 32 GKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 32 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
-.+|.+|+...+..++..++..++-.+|...-. +.-..|..+...+.
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~-----~er~k~~~M~~~L~ 54 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVHG-----IERDKFVDMQENLK 54 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-----HHHHhHHHHHHHHH
Confidence 357888999999999888888888888876542 33344555544443
No 136
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=75.94 E-value=6.4 Score=18.04 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCC-CCCcccHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDD-KDGKLRWNELKVALKD 45 (89)
Q Consensus 16 ~~l~~~f~~~d~~~-~~g~i~~~el~~~l~~ 45 (89)
..+..+|+.|..-+ ....++..||+..+..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34677888885213 3458999999988864
No 137
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=75.81 E-value=8.6 Score=19.45 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 35 RWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 35 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
+.+++..++...+..++..++..+++.-+..+--..+-..+..++.
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 4456666666667777777777777664433323334344444443
No 138
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.84 E-value=15 Score=21.60 Aligned_cols=59 Identities=15% Similarity=0.230 Sum_probs=41.1
Q ss_pred HHHHHhcCCCCCCcccHHHH---HHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 20 RYLKRYATDDKDGKLRWNEL---KVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 20 ~~f~~~d~~~~~g~i~~~el---~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
-+|+...- ||.++..|. +.++.. ..+++..++..++.....-+...+++..|...++..
T Consensus 34 Llf~Vm~A---DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 34 LLFHVMEA---DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHhc---ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 55777655 777777764 444433 456888889998888766666778888887777643
No 139
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=74.26 E-value=11 Score=20.02 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=32.7
Q ss_pred CcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 32 GKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 32 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
..++..||....+..+..++...++.++..+-...-.-.+-++=..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 346778888888888888888777777777655444444444444444433
No 140
>PRK00523 hypothetical protein; Provisional
Probab=74.18 E-value=10 Score=19.51 Aligned_cols=32 Identities=13% Similarity=0.138 Sum_probs=27.3
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
+--|+.+-++..+.+.|..+|+..+++++...
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34578888999889999999999999998776
No 141
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=73.89 E-value=30 Score=25.74 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
....++.+|+..+. .+++.+...++..+.......+ ++..+|..+..+ .+.++.+++..++...+
T Consensus 170 ~~~~~~~~f~e~~~-~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 170 SESKARRLFKESDN-SQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred hHHHHHHHHHHHHh-hccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 34566777877777 7888888888888887766554 566677666544 66777777777776554
No 142
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=73.88 E-value=13 Score=30.23 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh--CCCCcHHHHHHHHHhcCCCCCCcccHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKDL--GLHFSGFRAKRAVHYADVNGDGCVDEEEM 75 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef 75 (89)
++.++.++....|+ +.+|+|+..+....+..- ..-.+..+|...|+.++. +.-.|+.++.
T Consensus 2294 ~~p~fe~~ld~vDP-~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2294 PEPEFEEILDLVDP-NRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred CChhHHHHHHhcCC-CCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 34578888899999 999999999988877532 344566688989988886 4455555554
No 143
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=72.64 E-value=17 Score=25.75 Aligned_cols=60 Identities=20% Similarity=0.185 Sum_probs=44.2
Q ss_pred HHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc---C-----CCCCCcccHHHHHHHHH
Q 045293 20 RYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYA---D-----VNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 20 ~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---d-----~~~~g~i~~~ef~~~~~ 80 (89)
-+|..|.. .+.+.++..-|..+|++.|..-++..++.++..+ + ....+.++.+-|..++.
T Consensus 90 LLFyLiae-gq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 90 LLFYLIAE-GQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhhHHhhc-CCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 35777765 5679999999999999999888877777776443 3 23446778888877653
No 144
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.07 E-value=12 Score=19.21 Aligned_cols=33 Identities=6% Similarity=0.104 Sum_probs=27.2
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcC
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYAD 63 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 63 (89)
+--|+.+-++..+...|..+|+..++++++...
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 345788888988889999999999999887653
No 145
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=70.89 E-value=4.8 Score=17.20 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=11.5
Q ss_pred CCcccHHHHHHHHHHHHh
Q 045293 67 DGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 67 ~g~i~~~ef~~~~~~~~~ 84 (89)
.|.|+++++..+...+..
T Consensus 2 ~~~i~~~~~~d~a~rv~~ 19 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNN 19 (33)
T ss_pred CceecHHHHHHHHHHHHH
Confidence 456777777776665544
No 146
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=70.27 E-value=17 Score=20.37 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=37.8
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHH
Q 045293 22 LKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMND 77 (89)
Q Consensus 22 f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 77 (89)
|-.... .++..++.++++.+|...|..+....+..+++.+.. .+.+|.+.
T Consensus 9 YlL~~l-gG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 9 YLMCVL-GGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 333444 566678999999999999999999889988888753 45566654
No 147
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=69.78 E-value=13 Score=18.72 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=26.8
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
+--|+.+-++......|..+|+..+++++...
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34578888999889999999999999988765
No 148
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=69.15 E-value=23 Score=23.48 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
.|.|+.+|-...+.......+...++.+++.+. |+-+||..++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHHh
Confidence 466666665555555433444455555555554 5556665543
No 149
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.86 E-value=7.7 Score=27.50 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKD 45 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~ 45 (89)
.-++-++|..++...|. +.||.++..||+.++--
T Consensus 260 Sklpi~ELshIWeLsD~-d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 260 SKLPIEELSHIWELSDV-DRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCchHHHHHHHhhccc-CccccccHHHHHhhHhh
Confidence 34567899999999999 99999999999988753
No 150
>PRK01844 hypothetical protein; Provisional
Probab=67.31 E-value=16 Score=18.84 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=27.1
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
+--|+.+-++..+.+.|..+|+..+++++...
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 33578888998889999999999999988776
No 151
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=64.25 E-value=8.6 Score=14.81 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=6.5
Q ss_pred CCCCcccHHHHHHH
Q 045293 65 NGDGCVDEEEMNDL 78 (89)
Q Consensus 65 ~~~g~i~~~ef~~~ 78 (89)
+++|.|+--++..+
T Consensus 3 N~DG~vna~D~~~l 16 (21)
T PF00404_consen 3 NGDGKVNAIDLALL 16 (21)
T ss_dssp TSSSSSSHHHHHHH
T ss_pred CCCCcCCHHHHHHH
Confidence 44555544444433
No 152
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=63.13 E-value=24 Score=19.59 Aligned_cols=21 Identities=10% Similarity=0.359 Sum_probs=12.4
Q ss_pred HhcCCCCCCcccHHHHHHHHHH
Q 045293 24 RYATDDKDGKLRWNELKVALKD 45 (89)
Q Consensus 24 ~~d~~~~~g~i~~~el~~~l~~ 45 (89)
.||+ ..+.+|+.+++++.++.
T Consensus 11 LYDT-~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 11 LYDT-ETSSYVTLEDIRDLVRE 31 (107)
T ss_pred ccCC-CccceeeHHHHHHHHHC
Confidence 3455 55566666666666653
No 153
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=61.95 E-value=27 Score=19.81 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCCCC--CCcccHHHHHHHHHHhC-------CCCc-----------HHHHHHHHHhcCCCCCCcccHHHH
Q 045293 16 EQVKRYLKRYATDDK--DGKLRWNELKVALKDLG-------LHFS-----------GFRAKRAVHYADVNGDGCVDEEEM 75 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~--~g~i~~~el~~~l~~~~-------~~~~-----------~~~~~~~~~~~d~~~~g~i~~~ef 75 (89)
..+.++|+.+.. .. +..++..++..++..+- .... +-.+..++..+|++.+|.|+.-+|
T Consensus 41 ~~v~~~f~~~~l-~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 41 SNVIEAFREHGL-NQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHTT----T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHcCC-CcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 345677777654 32 56799999988887652 1111 123456788899999999999888
Q ss_pred HHHH
Q 045293 76 NDLV 79 (89)
Q Consensus 76 ~~~~ 79 (89)
...+
T Consensus 120 KvaL 123 (127)
T PF09068_consen 120 KVAL 123 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 154
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=61.55 E-value=16 Score=18.93 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCC
Q 045293 15 EEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADV 64 (89)
Q Consensus 15 ~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 64 (89)
.+.++++...- ...|+|+..++..+|.. ..++...+..++..+..
T Consensus 6 ~~~i~~Li~~g---K~~G~lT~~eI~~~L~~--~~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 6 EEAIKKLIEKG---KKKGYLTYDEINDALPE--DDLDPEQIDEIYDTLED 50 (82)
T ss_dssp HHHHHHHHHHH---HHHSS-BHHHHHHH-S---S---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH---hhcCcCCHHHHHHHcCc--cCCCHHHHHHHHHHHHH
Confidence 34555544432 24789999999998873 33677788888877643
No 155
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=60.94 E-value=24 Score=21.06 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=37.4
Q ss_pred HHHHHHHHhc----CCCCCC-cccHHHHHHHHHHhCC----CCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 17 QVKRYLKRYA----TDDKDG-KLRWNELKVALKDLGL----HFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 17 ~l~~~f~~~d----~~~~~g-~i~~~el~~~l~~~~~----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
.+.+.|+.|. . ..+| .++...+..++...+. .++.-.+...|..+....-..++|++|...+..+.
T Consensus 13 ~~~~~f~~Fa~fGd~-~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDS-KASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred hHHHHHHHHHHcCCc-cccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 3445555553 2 2334 5666777888876642 23333344445444444456788999977776544
No 156
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=55.90 E-value=34 Score=19.00 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=39.3
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 22 LKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 22 f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
|-.... .++..++.++++.+|...|..+....+..+++.+.. .+.++.+..-.
T Consensus 7 ylL~~l-~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~ 59 (109)
T cd05833 7 YLLAVL-GGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGK 59 (109)
T ss_pred HHHHHH-cCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhH
Confidence 333444 566689999999999999998988888888887753 45666665443
No 157
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=55.81 E-value=30 Score=18.39 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
.+-.|+..+|+..|.....-.+..+...+=..+|...++.|+.=||--..+
T Consensus 19 ~r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 19 KRTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp T-SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CCeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 356799999999999876444445556566678888999999777755444
No 158
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=55.51 E-value=26 Score=17.59 Aligned_cols=21 Identities=10% Similarity=0.347 Sum_probs=18.0
Q ss_pred HhcCCCCCCcccHHHHHHHHHH
Q 045293 24 RYATDDKDGKLRWNELKVALKD 45 (89)
Q Consensus 24 ~~d~~~~~g~i~~~el~~~l~~ 45 (89)
.||+ ..+.+|+.++++++++.
T Consensus 11 LYDT-~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDT-ETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccC-CCceeEeHHHHHHHHHC
Confidence 5788 88899999999998875
No 159
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=55.25 E-value=21 Score=16.38 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHH
Q 045293 37 NELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMN 76 (89)
Q Consensus 37 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 76 (89)
+|...+|..+| ++..++..++..... ...++.++.+
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~i 39 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHH
Confidence 46667777766 778888888877753 2235566544
No 160
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=54.97 E-value=28 Score=17.80 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.3
Q ss_pred ccHHHH
Q 045293 34 LRWNEL 39 (89)
Q Consensus 34 i~~~el 39 (89)
|+..|+
T Consensus 29 Vs~~EI 34 (71)
T PF04282_consen 29 VSASEI 34 (71)
T ss_pred CCHHHH
Confidence 333333
No 161
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=54.81 E-value=31 Score=25.22 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=27.7
Q ss_pred cHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 51 SGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 51 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
+..-+..+|...|.+.+|.++|.+++..+.....
T Consensus 553 s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~ 586 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA 586 (671)
T ss_pred HHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh
Confidence 3456788999999999999999999998865543
No 162
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=53.77 E-value=40 Score=20.46 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=23.1
Q ss_pred CCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcC
Q 045293 29 DKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYAD 63 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 63 (89)
+.+|++..+++-+.+..-+..++.+++..+...-+
T Consensus 28 d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~ 62 (186)
T PF01885_consen 28 DPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDD 62 (186)
T ss_dssp -TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-S
T ss_pred CCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCC
Confidence 67899999999888887666678888888886643
No 163
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=52.40 E-value=38 Score=18.45 Aligned_cols=50 Identities=12% Similarity=0.048 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhC-CCCcHHHHHHHHHhc
Q 045293 12 TPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLG-LHFSGFRAKRAVHYA 62 (89)
Q Consensus 12 ~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~ 62 (89)
.++++++.++-..+-. .+....+..++...+..+. ..++.+++.++-..+
T Consensus 35 ~Ltd~ev~~Va~~L~~-~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 35 RLTDDEVAEVAAELAA-RGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp TS-HHHHHHHHHHHHH-HTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 3566666666655543 3444445556666665443 444555665554443
No 164
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=51.66 E-value=53 Score=19.91 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=27.3
Q ss_pred CCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcC
Q 045293 29 DKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYAD 63 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 63 (89)
+.+|++..+++-+.+..-+..++.+.+..+...-+
T Consensus 29 d~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 29 DEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred CCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 67899999999988875556678888888876533
No 165
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=49.85 E-value=83 Score=22.18 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=41.0
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH-hCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKD-LGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
.-+.-+.++.+.+..|- |.+|.|+.+|--.+++. +..+-+...-.+-| -. .+..|+.+++-..+.
T Consensus 63 dklg~EAir~iHrqmDD-D~nG~Id~~ESdeFlrEdmky~~~~~kr~~~f---H~-dD~~ItVedLWeaW~ 128 (575)
T KOG4403|consen 63 DKLGYEAIRDIHRQMDD-DHNGSIDVEESDEFLREDMKYRDSTRKRSEKF---HG-DDKHITVEDLWEAWK 128 (575)
T ss_pred chhhHHHHHHHHHhccc-ccCCCcccccchHHHHHHhhcccchhhhhhhc---cC-CccceeHHHHHHHHH
Confidence 44566889999999998 99999999987777763 33322222222222 11 345677776655543
No 166
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=49.66 E-value=45 Score=18.51 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=31.8
Q ss_pred cccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHH
Q 045293 33 KLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMN 76 (89)
Q Consensus 33 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 76 (89)
.++.+.++.+|...|..+....+..+.+.+.. ++.++.+
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G-----kdIeElI 54 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED-----VNIEEAI 54 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHH
Confidence 79999999999999999999888888887742 4555554
No 167
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=48.90 E-value=41 Score=17.82 Aligned_cols=48 Identities=8% Similarity=-0.089 Sum_probs=32.8
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
+.|.++.++...+-. .....+.+..++..+.. .|.-.|..|+.+++..
T Consensus 31 ~~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L~~--RG~~AF~~F~~aL~~~ 78 (90)
T cd08332 31 QKDILTDSMAESIMA---KPTSFSQNVALLNLLPK--RGPRAFSAFCEALRET 78 (90)
T ss_pred HcCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHH--hChhHHHHHHHHHHhc
Confidence 357888877655443 33456677777777643 5667899999999764
No 168
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=48.70 E-value=39 Score=17.55 Aligned_cols=51 Identities=2% Similarity=0.019 Sum_probs=36.7
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKW 85 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 85 (89)
+.|.|+.++...+.. ...+.+.++.++..... .|...+..|+.+++.+..+
T Consensus 26 ~~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p~ 76 (82)
T cd08330 26 GKKVITQEQYSEVRA---EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEPY 76 (82)
T ss_pred HCCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhChH
Confidence 467888887665543 34567788888887754 6778999999999765543
No 169
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=48.08 E-value=39 Score=17.40 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHhCCCCcHHHHHHHHHhcCCC-CCCcccHHHHHHHH
Q 045293 35 RWNELKVALKDLGLHFSGFRAKRAVHYADVN-GDGCVDEEEMNDLV 79 (89)
Q Consensus 35 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 79 (89)
...++...|. |..++.+.+...+...+.. .-+.++-+||+.++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666664 7788899999999887543 33568888888764
No 170
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=47.81 E-value=25 Score=20.28 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=21.2
Q ss_pred CCCCcccHHHHHHHHHHHHhcccCC
Q 045293 65 NGDGCVDEEEMNDLVKYTVKWRLSN 89 (89)
Q Consensus 65 ~~~g~i~~~ef~~~~~~~~~~~~~~ 89 (89)
.+|+.++|+.++.++..++..|..+
T Consensus 103 ~aD~~v~y~~vv~vm~~l~~aG~~~ 127 (137)
T COG0848 103 RADKNVKYGTVVKVMDLLKEAGFKK 127 (137)
T ss_pred EeCCCCCHHHHHHHHHHHHHcCCce
Confidence 4677899999999999999888754
No 171
>COG5562 Phage envelope protein [General function prediction only]
Probab=46.25 E-value=16 Score=21.19 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=16.0
Q ss_pred HhcCCCCCCcccHHHHHHHHH
Q 045293 60 HYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 60 ~~~d~~~~g~i~~~ef~~~~~ 80 (89)
.....+..|..+|+||+..+-
T Consensus 79 ~al~~~qsGqttF~ef~~~la 99 (137)
T COG5562 79 TALRRHQSGQTTFEEFCSALA 99 (137)
T ss_pred HHHHHHhcCCccHHHHHHHHH
Confidence 334456789999999998774
No 172
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=45.91 E-value=29 Score=23.24 Aligned_cols=47 Identities=30% Similarity=0.442 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHh-CCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 35 RWNELKVALKDL-GLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 35 ~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
|...++.+...+ |..+..-.-+.+|...|.+++|.++-.|+-.++..
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHH
Confidence 566677666554 34444445566777788888998888877776653
No 173
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.91 E-value=85 Score=22.98 Aligned_cols=68 Identities=16% Similarity=0.243 Sum_probs=47.6
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh---CC-----CCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 11 LTPEEEQVKRYLKRYATDDKDGKLRWNELKVALKDL---GL-----HFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 11 ~~~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~---~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
....+.+++-.|..+|. .+|.++.+++..++..+ +. ....+....++...+.+..|.+.++++..++.
T Consensus 13 ~~~~d~~l~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 13 DCSYDDKLQTFFDMYDK--GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred CCChhHHHHHHHHHHhh--hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 34567889999999996 88999999988888754 11 12233445567777777777777776665554
No 174
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.40 E-value=49 Score=17.74 Aligned_cols=52 Identities=10% Similarity=-0.123 Sum_probs=36.1
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKW 85 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 85 (89)
.|.++.+....+-...+..-....++.++.... .|.=-|..|+.+++.+...
T Consensus 31 ~~ilT~~d~e~I~aa~~~~g~~~~ar~LL~~L~---rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 31 QGLLTEEDRNRIEAATENHGNESGARELLKRIV---QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred cCCCCHHHHHHHHHhccccCcHHHHHHHHHHhc---cCCcHHHHHHHHHHHcCch
Confidence 567777766665554344455777888888887 3445679999999877653
No 175
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=44.72 E-value=48 Score=17.45 Aligned_cols=50 Identities=10% Similarity=-0.085 Sum_probs=28.6
Q ss_pred CcccHHHHHHHHHH-hCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 32 GKLRWNELKVALKD-LGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 32 g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
|.-...--..||.. -|..++.+-.+.+-+.++...+..|+|+|++.+...
T Consensus 27 ~~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 27 DHHPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYALG 77 (82)
T ss_pred CCCchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33344444556643 355566655454444444445556999999876543
No 176
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=44.62 E-value=97 Score=20.94 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhc---CCCCCCcccHHHHHHHHHHHHhcccC
Q 045293 37 NELKVALKDLGLHFSGFRAKRAVHYA---DVNGDGCVDEEEMNDLVKYTVKWRLS 88 (89)
Q Consensus 37 ~el~~~l~~~~~~~~~~~~~~~~~~~---d~~~~g~i~~~ef~~~~~~~~~~~~~ 88 (89)
.-++..+..+|..++.+++..++..+ .......|+-+|+..++.....-+.+
T Consensus 323 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~~~~~~~ 377 (378)
T PRK11858 323 HALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDVRRSRKA 377 (378)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhccC
Confidence 45777788889888888887776553 22234679999999999877665543
No 177
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=44.60 E-value=41 Score=16.63 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=36.6
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhC-CCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcccC
Q 045293 22 LKRYATDDKDGKLRWNELKVALKDLG-LHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWRLS 88 (89)
Q Consensus 22 f~~~d~~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 88 (89)
|..+.. ...|.++..+...+..-+. ..++.+-+..++...-.. +..++.=...++..+...++.
T Consensus 2 ~~~~e~-~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~~--~~~~~~Yi~~Il~~W~~~gi~ 66 (77)
T PF07261_consen 2 FEFYEK-NFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALEN--NKRSFNYIEKILNNWKQKGIK 66 (77)
T ss_dssp HHHHHC-CCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC--T--SHHHHHHHHHHHHHCT--
T ss_pred HHHHHH-HcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCC
Confidence 455556 5567888887776665554 367777777777665532 334455455677777666654
No 178
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=43.64 E-value=29 Score=17.36 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.0
Q ss_pred CCcccHHHHHHHHHHHHhc
Q 045293 67 DGCVDEEEMNDLVKYTVKW 85 (89)
Q Consensus 67 ~g~i~~~ef~~~~~~~~~~ 85 (89)
+|.|+++.|+.-++...+.
T Consensus 37 ~g~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSLARE 55 (65)
T ss_dssp TTSS-HHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 5779999999888876653
No 179
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=42.98 E-value=46 Score=16.96 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 14 EEEQVKRYLKRYATDDKDGKLRWNELKVALKD 45 (89)
Q Consensus 14 ~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~ 45 (89)
+.+++..+...|..--..|.+..+|+..++..
T Consensus 11 s~e~~~~~~~ql~Q~~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 11 SAEEADGALIQLSQMLASGKLRGEEINSLLEA 42 (75)
T ss_pred CHHHHHHHHHHHHHHHHcCcccHHHHHHHHHH
Confidence 34555444444422135789999999988754
No 180
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=42.61 E-value=45 Score=16.47 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHHHhccc
Q 045293 55 AKRAVHYADVNGDGCVDEEEMNDLVKYTVKWRL 87 (89)
Q Consensus 55 ~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~ 87 (89)
+..++..+...-...++.+|...+++.+.+|..
T Consensus 38 v~~~~~~~N~~~~~PL~~~Ev~~i~kSi~k~~~ 70 (71)
T PF08708_consen 38 VLSLAQAINSNFSPPLPESEVKAIAKSIAKWTW 70 (71)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 555555544434666888888888888877643
No 181
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=42.29 E-value=70 Score=18.66 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=11.3
Q ss_pred cHHHHHHHHHHHHh
Q 045293 71 DEEEMNDLVKYTVK 84 (89)
Q Consensus 71 ~~~ef~~~~~~~~~ 84 (89)
+|++++.++..+..
T Consensus 44 ~~~~mL~~ln~i~t 57 (141)
T PF12588_consen 44 DYDEMLQLLNHIMT 57 (141)
T ss_pred cHHHHHHHHHHHHh
Confidence 79999988887764
No 182
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=41.73 E-value=1e+02 Score=21.12 Aligned_cols=14 Identities=7% Similarity=-0.028 Sum_probs=6.9
Q ss_pred cccHHHHHHHHHHH
Q 045293 69 CVDEEEMNDLVKYT 82 (89)
Q Consensus 69 ~i~~~ef~~~~~~~ 82 (89)
++-|.||+..+..+
T Consensus 42 RL~FNeFi~tma~I 55 (379)
T PF11593_consen 42 RLQFNEFIQTMANI 55 (379)
T ss_pred HHHHHHHHHHHHHh
Confidence 34455555555443
No 183
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=41.46 E-value=27 Score=21.45 Aligned_cols=32 Identities=16% Similarity=0.337 Sum_probs=25.4
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCC
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGL 48 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~ 48 (89)
+..+++|..||+ .+--..+.+++.+++...+.
T Consensus 55 e~freaF~~Fd~-~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 55 EAFREAFHGFDP-EKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred HHHHHHHhcCCH-HHHHcCCHHHHHHHHhCcch
Confidence 567888999988 77778888888888876664
No 184
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=41.14 E-value=58 Score=17.34 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=36.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
++|.|+.++...+.. .+.+.+.+++++...- ..|....+-|..+++....
T Consensus 26 ~n~~it~E~y~~V~a---~~T~qdkmRkLld~v~--akG~~~k~~F~~iL~e~~~ 75 (85)
T cd08324 26 KNDYFSTEDAEIVCA---CPTQPDKVRKILDLVQ--SKGEEVSEYFLYLLQQLAD 75 (85)
T ss_pred ccCCccHHHHHHHHh---CCCCHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHH
Confidence 578999998775543 4567788999998753 4566777888888876543
No 185
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=40.87 E-value=48 Score=16.30 Aligned_cols=26 Identities=19% Similarity=0.179 Sum_probs=18.4
Q ss_pred cccHHHHHHHHHHhCCCCcHHHHHHH
Q 045293 33 KLRWNELKVALKDLGLHFSGFRAKRA 58 (89)
Q Consensus 33 ~i~~~el~~~l~~~~~~~~~~~~~~~ 58 (89)
.|+.++|..+|+.....++..++.+.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 47888888888877666777666543
No 186
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=40.73 E-value=41 Score=15.57 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHh
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHY 61 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 61 (89)
.+.+++..+-..|.. +..++..+...+...++ ++...|..+|..
T Consensus 7 ~t~~q~~~L~~~f~~---~~~p~~~~~~~la~~l~--l~~~~V~~WF~n 50 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQE---NPYPSKEEREELAKELG--LTERQVKNWFQN 50 (57)
T ss_dssp SSHHHHHHHHHHHHH---SSSCHHHHHHHHHHHHT--SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hcccccccccccccccc--ccccccccCHHH
Confidence 445555444444443 45667777777666665 777777777753
No 187
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=40.25 E-value=67 Score=17.81 Aligned_cols=31 Identities=10% Similarity=0.170 Sum_probs=16.3
Q ss_pred cHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhc
Q 045293 51 SGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKW 85 (89)
Q Consensus 51 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 85 (89)
+.++++.++... +..++-++.-.++..+.++
T Consensus 80 ~~dElrai~~~~----~~~~~~e~l~~ILd~l~k~ 110 (112)
T PRK14981 80 TRDELRAIFAKE----RYTLSPEELDEILDIVKKY 110 (112)
T ss_pred CHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHh
Confidence 345666666544 2335556666665555443
No 188
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=39.42 E-value=78 Score=18.38 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=28.4
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcC
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYAD 63 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 63 (89)
.+...+.+|+...|...|..++...+.+.++.+.
T Consensus 13 ~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elg 46 (146)
T TIGR01529 13 EEKISTQEELVALLKAEGIEVTQATVSRDLRELG 46 (146)
T ss_pred cCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcC
Confidence 3456789999999999999999999988887754
No 189
>PRK09389 (R)-citramalate synthase; Provisional
Probab=38.96 E-value=1.2e+02 Score=21.42 Aligned_cols=47 Identities=19% Similarity=0.285 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHhcCC--CCCCcccHHHHHHHHHHHH
Q 045293 37 NELKVALKDLGLHFSGFRAKRAVHYADV--NGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 37 ~el~~~l~~~~~~~~~~~~~~~~~~~d~--~~~g~i~~~ef~~~~~~~~ 83 (89)
.-++..+..+|..++..++..++..+-. +....++-+|+..++....
T Consensus 321 ~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~ 369 (488)
T PRK09389 321 AALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVL 369 (488)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 4567777888988888888887766432 2345699999988887654
No 190
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=38.09 E-value=18 Score=20.24 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=22.1
Q ss_pred CCCcccHHHHHHHHHHh--CCCCcHHHHHHHHHhcCCCCCCcccHHHHHH
Q 045293 30 KDGKLRWNELKVALKDL--GLHFSGFRAKRAVHYADVNGDGCVDEEEMND 77 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 77 (89)
-||.++..|...+...+ ...++......+...++......+++.+|+.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 85 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLR 85 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 57888888876665544 2233444444444443322222344444443
No 191
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=37.95 E-value=97 Score=19.02 Aligned_cols=42 Identities=12% Similarity=-0.042 Sum_probs=22.7
Q ss_pred CCcccHHHHHHHHHHh-----CCCCcHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 045293 31 DGKLRWNELKVALKDL-----GLHFSGFRAKRAVHYADVNGDGCVDEEEMNDL 78 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 78 (89)
..+-....+..|+..+ +..++++++++++-.++ -.|.+|...
T Consensus 140 ~dfe~r~kl~~Wl~~Ln~m~asdeL~e~q~rqllfDle------~aY~~F~~~ 186 (188)
T PF03997_consen 140 PDFEGRSKLVEWLIKLNGMKASDELSEEQARQLLFDLE------SAYNAFYRS 186 (188)
T ss_dssp TT-CCHHHHHHHHHHHHTS-TT-B--HHHHHHHHHHHH------HHHHHHHHC
T ss_pred CCCccHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHH------HHHHHHHHH
Confidence 3444556666666654 24566777777776665 346666544
No 192
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=37.91 E-value=76 Score=17.78 Aligned_cols=43 Identities=16% Similarity=0.040 Sum_probs=33.1
Q ss_pred CCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHH
Q 045293 29 DKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMN 76 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 76 (89)
.++..++.++++.+|...|..+....+..+++.+.. .+.++.+
T Consensus 13 ~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLI 55 (113)
T PLN00138 13 GGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELI 55 (113)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHH
Confidence 456678999999999999988888888888877743 3445554
No 193
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=37.80 E-value=59 Score=16.49 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 33 KLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 33 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
.-+.+|+...|...|..+++..+.+-++.+
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL 48 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKEL 48 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHc
Confidence 457889999999999999999998887765
No 194
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=37.79 E-value=33 Score=27.86 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCc----HHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFS----GFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~----~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
++..+++..||+ +..|.|...++...++.+..++. ... +.+-..+....++.|++.+-..++.+
T Consensus 1417 ~~F~~vW~~fDp-eatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~~ 1484 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDP-EATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALTK 1484 (1592)
T ss_pred HHHHHHHHhcCh-hhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHHH
Confidence 456777888999 99999999999999998743321 111 22333445556777888777665543
No 195
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=36.73 E-value=76 Score=17.47 Aligned_cols=42 Identities=19% Similarity=0.095 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 045293 34 LRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 34 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 80 (89)
++.++++.+|...+..+....+..+++.+.. .+.++.+....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHHH
Confidence 9999999999999999999999988888742 46677765443
No 196
>PHA02105 hypothetical protein
Probab=36.43 E-value=59 Score=16.04 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=27.0
Q ss_pred cccHHHHHHHHHHhC---CCCcHHHHHHHHHhcCCCCC--CcccHHHHHHHHHH
Q 045293 33 KLRWNELKVALKDLG---LHFSGFRAKRAVHYADVNGD--GCVDEEEMNDLVKY 81 (89)
Q Consensus 33 ~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~--g~i~~~ef~~~~~~ 81 (89)
+++.++++.++..-. .++..+.+.++-..+....- -.++|+||.+++-.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccc
Confidence 356677777765332 23444445554444443322 34689999877643
No 197
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=35.68 E-value=1.3e+02 Score=20.63 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=38.6
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 22 LKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 22 f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
...+|+ .+.|.++....+.++..+-.+--.+.++-+|.... +.+|.+.+..|..++....
T Consensus 116 LaA~ds-~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl~evl 175 (434)
T KOG4301|consen 116 LAAEDS-EGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFLHEVL 175 (434)
T ss_pred HhhcCc-cCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHH
Confidence 356788 88888888877777765432222345666676654 5667777777766665543
No 198
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=35.42 E-value=55 Score=15.41 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=22.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCC
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVN 65 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 65 (89)
..|.++..+++..+. .+...+-.+++.+|..
T Consensus 7 ~~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 7 KNGEITVAEFRDLLG-----LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TTSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHT
T ss_pred cCCcCcHHHHHHHHC-----ccHHHHHHHHHHHhcc
Confidence 368899999998773 6677777777777653
No 199
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=35.37 E-value=50 Score=14.90 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=10.6
Q ss_pred CcccHHHHHHHHHHHH
Q 045293 68 GCVDEEEMNDLVKYTV 83 (89)
Q Consensus 68 g~i~~~ef~~~~~~~~ 83 (89)
+.++..+.+..+..+.
T Consensus 17 ~~~~~~~v~~~v~~Ll 32 (47)
T PF02671_consen 17 GRISRSEVIEEVSELL 32 (47)
T ss_dssp TCSCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHH
Confidence 5677887776665543
No 200
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.08 E-value=77 Score=17.87 Aligned_cols=15 Identities=20% Similarity=0.499 Sum_probs=6.7
Q ss_pred ccHHHHHHHHHHHHh
Q 045293 70 VDEEEMNDLVKYTVK 84 (89)
Q Consensus 70 i~~~ef~~~~~~~~~ 84 (89)
++-++.-.++-.+.+
T Consensus 96 ~s~E~l~~Ildiv~K 110 (114)
T COG1460 96 LSDEELDKILDIVDK 110 (114)
T ss_pred CCHHHHHHHHHHHHH
Confidence 344544444444433
No 201
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=34.68 E-value=61 Score=18.04 Aligned_cols=25 Identities=12% Similarity=0.092 Sum_probs=21.2
Q ss_pred CCCCcccHHHHHHHHHHHHhcccCC
Q 045293 65 NGDGCVDEEEMNDLVKYTVKWRLSN 89 (89)
Q Consensus 65 ~~~g~i~~~ef~~~~~~~~~~~~~~ 89 (89)
..++.++|+.++.++..+.+.|+++
T Consensus 99 ~aD~~~~~~~vv~vmd~~~~~G~~~ 123 (129)
T TIGR02801 99 RADKTVPYGEVIKVMALLKQAGIEK 123 (129)
T ss_pred EcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 3677799999999999999988764
No 202
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=34.22 E-value=65 Score=15.88 Aligned_cols=55 Identities=13% Similarity=-0.075 Sum_probs=28.4
Q ss_pred CcccHHHHHHHHHHhC-CCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcccC
Q 045293 32 GKLRWNELKVALKDLG-LHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWRLS 88 (89)
Q Consensus 32 g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 88 (89)
+.++..++..+..-+. .+++.+.+..++...-. .+..++.=...++..+.+-++.
T Consensus 11 r~ls~~e~~~i~~~~~~~~~~~evI~~ai~~a~~--~~~~~~~Yi~~Il~~W~~~gi~ 66 (73)
T TIGR01446 11 RMLSPFEMEDLKYWLDEFGNSPELIKEALKEAVS--NNKANYKYIDAILNNWKNNGIK 66 (73)
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCC
Confidence 3566555444443221 23556667766665432 2455655334566666665543
No 203
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=34.09 E-value=1.5e+02 Score=20.05 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHHHHh------cCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHh
Q 045293 10 GLTPEEEQVKRYLKRY------ATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHY 61 (89)
Q Consensus 10 ~~~~~~~~l~~~f~~~------d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 61 (89)
++.-+.++|+.+|+++ |+ |.+.---.++|+.+-.+.. -+++.+.++.+..
T Consensus 25 ~k~Asd~eIKkAYRKLALk~HPDk-Npddp~A~e~F~~in~AYE-VLsDpekRk~YD~ 80 (336)
T KOG0713|consen 25 PKNASDQEIKKAYRKLALKYHPDK-NPDDPNANEKFKEINAAYE-VLSDPEKRKHYDT 80 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCC-CCCCHHHHHHHHHHHHHHH-HhcCHHHHHHHHh
Confidence 5667788999999866 56 6666666777877766554 3566666666644
No 204
>PRK09462 fur ferric uptake regulator; Provisional
Probab=33.91 E-value=96 Score=17.76 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=27.0
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 21 YLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 21 ~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
++..+.. ..++.++.+|+...+...+..++...|-+.++.+
T Consensus 22 Il~~l~~-~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L 62 (148)
T PRK09462 22 ILEVLQE-PDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQF 62 (148)
T ss_pred HHHHHHh-CCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 3344433 3456789999998888777777777666655443
No 205
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=32.90 E-value=88 Score=17.04 Aligned_cols=29 Identities=10% Similarity=0.307 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 52 GFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 52 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
..++..++... +.+++-++.-.++..+.+
T Consensus 87 ~~El~~ii~~~----~~r~~ee~l~~iL~~v~~ 115 (117)
T PF03874_consen 87 AVELRAIIESL----ESRFSEEDLEEILDLVSK 115 (117)
T ss_dssp HHHHHHHSTTG----TTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----ccCCCHHHHHHHHHHHHH
Confidence 34444444333 335676666666655544
No 206
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.68 E-value=1.4e+02 Score=19.38 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHHh-cCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 12 TPEEEQVKRYLKRY-ATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 12 ~~~~~~l~~~f~~~-d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
..+...+.++|..+ |+ ..+..|..+.+.+.+..+|..+.+-.+.-+--.+....-+..+.+||+.-+
T Consensus 60 ~~s~~~l~~~f~~y~d~-~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~ 127 (260)
T KOG3077|consen 60 RVSEKRLEELFNQYKDP-DDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGM 127 (260)
T ss_pred cccHHHHHHHHHHhcCc-ccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHH
Confidence 35566778888776 55 444678888888888998866554332222222334445677888887644
No 207
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=31.99 E-value=71 Score=18.38 Aligned_cols=17 Identities=18% Similarity=0.480 Sum_probs=8.6
Q ss_pred CCcccHHHHHHHHHHHH
Q 045293 67 DGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 67 ~g~i~~~ef~~~~~~~~ 83 (89)
.++|+=++.-.++..++
T Consensus 112 ~nkidD~~le~iL~dls 128 (134)
T KOG2351|consen 112 ENKIDDDELEQILKDLS 128 (134)
T ss_pred ccccCHHHHHHHHHHHH
Confidence 34455555555554443
No 208
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=31.36 E-value=1.5e+02 Score=19.13 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=30.4
Q ss_pred CCCcccHHHHHHHHHHh--CCCCcHHH---HHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDL--GLHFSGFR---AKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~--~~~~~~~~---~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
-||.++..|+. ..+.+ ...++... +..+|+... ....++++|+..++..
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k---~~~~~l~~~~~~~~~~ 121 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGK---EPDFPLREKLRQFRSV 121 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhc---ccCCCHHHHHHHHHHH
Confidence 58999999987 44433 23456555 555565442 2337788888777543
No 209
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=30.75 E-value=1e+02 Score=17.06 Aligned_cols=25 Identities=8% Similarity=0.016 Sum_probs=21.0
Q ss_pred CCCCcccHHHHHHHHHHHHhcccCC
Q 045293 65 NGDGCVDEEEMNDLVKYTVKWRLSN 89 (89)
Q Consensus 65 ~~~g~i~~~ef~~~~~~~~~~~~~~ 89 (89)
..++.+.|+.++.++..+++.|.++
T Consensus 90 ~aD~~~~~~~vv~v~d~~~~~G~~~ 114 (121)
T TIGR02804 90 KSDKEAKFQDFVTITDMLKAKEHEN 114 (121)
T ss_pred EeCCCCCHhHHHHHHHHHHHcCCCe
Confidence 4567799999999999999888764
No 210
>PF09873 DUF2100: Uncharacterized protein conserved in archaea (DUF2100); InterPro: IPR019210 This entry represents various hypothetical archaeal proteins, and has no known function.
Probab=30.20 E-value=1.5e+02 Score=18.71 Aligned_cols=18 Identities=39% Similarity=0.492 Sum_probs=15.4
Q ss_pred CCCCcccHHHHHHHHHHh
Q 045293 29 DKDGKLRWNELKVALKDL 46 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~ 46 (89)
...|.|+..+|+.++..+
T Consensus 37 ak~G~Id~~e~kkav~~l 54 (215)
T PF09873_consen 37 AKPGKIDVEEFKKAVYSL 54 (215)
T ss_pred CCCCcccHHHHHHHHHHH
Confidence 578999999999998764
No 211
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=30.12 E-value=1e+02 Score=16.89 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=31.6
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMND 77 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 77 (89)
..-.++.+++..++...|.......+..+.+.+.. .+.++++.
T Consensus 14 ~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g-----k~i~elIa 56 (103)
T cd05831 14 DGIEITADNINALLKAAGVNVEPYWPGLFAKALEG-----KDIKDLLS 56 (103)
T ss_pred CCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHhh
Confidence 34578999999999999988888777777766642 44565553
No 212
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=30.08 E-value=78 Score=17.50 Aligned_cols=25 Identities=12% Similarity=0.120 Sum_probs=21.2
Q ss_pred CCCCcccHHHHHHHHHHHHhcccCC
Q 045293 65 NGDGCVDEEEMNDLVKYTVKWRLSN 89 (89)
Q Consensus 65 ~~~g~i~~~ef~~~~~~~~~~~~~~ 89 (89)
..++.+.|+.+..++..+.+.|+++
T Consensus 91 ~aD~~~~~~~vv~v~d~~~~aG~~~ 115 (122)
T TIGR02803 91 RADKTVDYGDLMKVMNLLRQAGYLK 115 (122)
T ss_pred EcCCCCCHHHHHHHHHHHHHcCCCE
Confidence 4667799999999999999988764
No 213
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=30.03 E-value=44 Score=17.28 Aligned_cols=9 Identities=11% Similarity=0.051 Sum_probs=2.3
Q ss_pred CCcccHHHH
Q 045293 31 DGKLRWNEL 39 (89)
Q Consensus 31 ~g~i~~~el 39 (89)
.+.++..+.
T Consensus 51 ~~~lt~~~~ 59 (86)
T PF04433_consen 51 NKYLTKTDA 59 (86)
T ss_dssp TS---HHHH
T ss_pred CCcccHHHH
Confidence 333333333
No 214
>PF01498 HTH_Tnp_Tc3_2: Transposase; InterPro: IPR002492 Transposase proteins are necessary for efficient DNA transposition. This family includes the amino-terminal region of Tc1, Tc1A, Tc1B and Tc2B transposases of Caenorhabditis elegans. The region encompasses the specific DNA binding and second DNA recognition domains as well as an amino-terminal region of the catalytic domain of Tc3 as described in []. Tc3 is a member of the Tc1/mariner family of transposable elements. This entry also includes histone-lysine N-methyltransferase SETMAR, which is a SET domain and mariner transposase fusion gene-containing protein. This histone methyltransferase has sequence-specific DNA-binding activity and recognises the 19-mer core of the 5'-terminal inverted repeats (TIRs) of the Hsmar1 element. This protein has DNA nicking activity, and has in vivo end joining activity and may mediate genomic integration of foreign DNA [, , , ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated, 0015074 DNA integration; PDB: 3K9K_B 3F2K_B 3K9J_B 1U78_A.
Probab=29.99 E-value=78 Score=15.50 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=16.1
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
+..++..++...+...|..++...|...+...
T Consensus 11 ~p~~s~~~i~~~l~~~~~~vS~~TI~r~L~~~ 42 (72)
T PF01498_consen 11 NPRISAREIAQELQEAGISVSKSTIRRRLREA 42 (72)
T ss_dssp -----HHHHHHHT---T--S-HHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHccCCcCHHHHHHHHHHc
Confidence 44577888877776557788888888877664
No 215
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=29.44 E-value=45 Score=17.62 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=5.6
Q ss_pred CCcccHHHHHHHH
Q 045293 31 DGKLRWNELKVAL 43 (89)
Q Consensus 31 ~g~i~~~el~~~l 43 (89)
||.++..|...+.
T Consensus 16 DG~v~~~E~~~i~ 28 (111)
T cd07176 16 DGDIDDAELQAIE 28 (111)
T ss_pred ccCCCHHHHHHHH
Confidence 4444444444333
No 216
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=28.97 E-value=97 Score=21.57 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 54 RAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 54 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
+.+++.+.+- .|..++++|..-++.+.+.|
T Consensus 314 ~~~~~~~k~~---~~~f~l~D~~~q~~~i~kmG 343 (429)
T TIGR01425 314 NEKALIEKLK---EGTFTLRDMYEQFQNLLKMG 343 (429)
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHhcc
Confidence 3444444442 46799999999988887764
No 217
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=28.84 E-value=97 Score=16.25 Aligned_cols=12 Identities=25% Similarity=0.518 Sum_probs=6.5
Q ss_pred CCCcccHHHHHH
Q 045293 30 KDGKLRWNELKV 41 (89)
Q Consensus 30 ~~g~i~~~el~~ 41 (89)
-||.++..|...
T Consensus 12 aDG~v~~~E~~~ 23 (106)
T cd07316 12 ADGRVSEAEIQA 23 (106)
T ss_pred ccCCcCHHHHHH
Confidence 356666665443
No 218
>PRK10867 signal recognition particle protein; Provisional
Probab=28.50 E-value=1.2e+02 Score=21.18 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 51 SGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 51 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
++++.+++.+.+- .|..++++|..-++.+.+.|
T Consensus 312 ~~~~~~~~~~~~~---~g~f~l~d~~~q~~~~~kmG 344 (433)
T PRK10867 312 DEEKAEKLAKKLK---KGKFDLEDFLEQLQQMKKMG 344 (433)
T ss_pred CHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcC
Confidence 3444455554443 36789999998888877764
No 219
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=28.50 E-value=1.2e+02 Score=17.34 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=33.6
Q ss_pred CCCcccHHHHHHHHHHhC---------CCCcHHHHHHHHHhcCCCCCC-cccHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLG---------LHFSGFRAKRAVHYADVNGDG-CVDEEEMNDL 78 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~---------~~~~~~~~~~~~~~~d~~~~g-~i~~~ef~~~ 78 (89)
++..|+.+||.+++..-. ..++..+++.+.+.+.....+ .++..|-+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 567889999998887431 135677888888877765544 4877766543
No 220
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=28.33 E-value=1.2e+02 Score=21.06 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=22.0
Q ss_pred cHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 51 SGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 51 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
++++...+.+.+- .|..++++|..-++.+.+.|
T Consensus 311 ~~~~~~~~~~~~~---~~~f~l~d~~~q~~~~~kmG 343 (428)
T TIGR00959 311 DEEEAKKLAEKMK---KGQFDLEDFLEQLRQIKKMG 343 (428)
T ss_pred CHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcC
Confidence 3444555554443 36799999999888877764
No 221
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=28.14 E-value=85 Score=15.37 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=14.7
Q ss_pred ccHHHHHHHHHHhCC----CCcHHHHHHHH
Q 045293 34 LRWNELKVALKDLGL----HFSGFRAKRAV 59 (89)
Q Consensus 34 i~~~el~~~l~~~~~----~~~~~~~~~~~ 59 (89)
|..+++..++...|. ..+...++.++
T Consensus 25 I~L~el~~~L~~~g~~~~~~~~~~~l~~~l 54 (64)
T PF09494_consen 25 INLEELHAWLKASGIGFDRKVDPSKLKEWL 54 (64)
T ss_pred ccHHHHHHHHHHcCCCccceeCHHHHHHHH
Confidence 666667666665555 44444444444
No 222
>PF14178 YppF: YppF-like protein
Probab=27.74 E-value=89 Score=15.49 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=13.5
Q ss_pred CcccHHHHHHHHHHHHhcc
Q 045293 68 GCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 68 g~i~~~ef~~~~~~~~~~~ 86 (89)
|.|+..||..+++.+-..|
T Consensus 35 gei~i~eYR~lvreLE~~G 53 (60)
T PF14178_consen 35 GEISINEYRNLVRELEANG 53 (60)
T ss_pred CcccHHHHHHHHHHHHHhC
Confidence 5688888888887665543
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=27.69 E-value=1.3e+02 Score=21.02 Aligned_cols=30 Identities=13% Similarity=0.097 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 54 RAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 54 ~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
+.+.+.+.+. .|..++++|..-++.+.+.|
T Consensus 307 ~~~~~~~~~~---~~~f~l~d~~~q~~~~~kmG 336 (437)
T PRK00771 307 EEEKDVEKMM---KGKFTLKDMYKQLEAMNKMG 336 (437)
T ss_pred HHHHHHHHHH---cCCcCHHHHHHHHHHHHhcC
Confidence 3444444442 36789999999888887764
No 224
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=27.62 E-value=1.3e+02 Score=19.01 Aligned_cols=47 Identities=9% Similarity=0.145 Sum_probs=30.2
Q ss_pred cHHHHHHHHHH----hCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 35 RWNELKVALKD----LGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 35 ~~~el~~~l~~----~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
+.++++.++.. .+..+++.++..+...+..=.+-.+++.+|..-+..
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 67777777653 366677777777766654444445777777665543
No 225
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=27.31 E-value=47 Score=27.49 Aligned_cols=28 Identities=11% Similarity=0.316 Sum_probs=23.2
Q ss_pred HHHhcCCCCCCcccHHHHHHHHHHHHhc
Q 045293 58 AVHYADVNGDGCVDEEEMNDLVKYTVKW 85 (89)
Q Consensus 58 ~~~~~d~~~~g~i~~~ef~~~~~~~~~~ 85 (89)
.|+++|+++.|.|+..+|...|.....+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~y 4089 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKHY 4089 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccccc
Confidence 4678899999999999999988765544
No 226
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.09 E-value=1.1e+02 Score=16.08 Aligned_cols=49 Identities=8% Similarity=-0.056 Sum_probs=33.0
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
++|.++.++...+-. .....+.+..++..... .|.-.|..|+.+++...
T Consensus 27 ~~~Vlt~~~~e~I~~---~~tr~~q~~~LLd~L~~--RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 27 SRGVFTPDMIEEIQA---AGSRRDQARQLLIDLET--RGKQAFPAFLSALRETG 75 (84)
T ss_pred hcCCCCHHHHHHHHc---CCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcC
Confidence 467778776665543 23445667777777654 46678999999997653
No 227
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=26.92 E-value=64 Score=13.58 Aligned_cols=18 Identities=50% Similarity=0.552 Sum_probs=11.4
Q ss_pred cccHHHHHHHHHHhCCCC
Q 045293 33 KLRWNELKVALKDLGLHF 50 (89)
Q Consensus 33 ~i~~~el~~~l~~~~~~~ 50 (89)
.++..+++.+++..|...
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 356677777777666443
No 228
>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The
Probab=26.85 E-value=42 Score=17.65 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=10.5
Q ss_pred CCcccHHHHHHHHHHHH
Q 045293 67 DGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 67 ~g~i~~~ef~~~~~~~~ 83 (89)
+...+|+||..++....
T Consensus 19 ~~~~~f~ef~~ll~~lH 35 (80)
T cd06403 19 NKPGKFEDFYKLLEHLH 35 (80)
T ss_pred ccCcCHHHHHHHHHHHh
Confidence 33466777777766554
No 229
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=26.82 E-value=1.4e+02 Score=21.57 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCc
Q 045293 19 KRYLKRYATDDKDGKLRWNELKVALKDLGLHFS 51 (89)
Q Consensus 19 ~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~ 51 (89)
..+|..+-+ .+...++..++..++.+++....
T Consensus 488 t~~f~h~lk-k~~~~lsdsd~~a~l~slgl~~d 519 (612)
T COG5069 488 TALFNHVLK-KDGCGLSDSDLCAWLGSLGLKGD 519 (612)
T ss_pred HHHHHHHHh-cCCCCCCHHHHHHHHHHhccccC
Confidence 455777666 45557899999999988865443
No 230
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=26.48 E-value=66 Score=13.52 Aligned_cols=15 Identities=33% Similarity=0.284 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhcccC
Q 045293 74 EMNDLVKYTVKWRLS 88 (89)
Q Consensus 74 ef~~~~~~~~~~~~~ 88 (89)
|.+.++......|+|
T Consensus 4 EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 4 EWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHcCCC
Confidence 456666666655554
No 231
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=26.14 E-value=1.3e+02 Score=21.17 Aligned_cols=46 Identities=9% Similarity=0.037 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcc
Q 045293 38 ELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWR 86 (89)
Q Consensus 38 el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 86 (89)
++..++......++.++.+.+.+.+- .|..++++|..-+....+.|
T Consensus 298 Dv~sLvEk~~~~~d~e~a~~~~~kl~---~g~FtL~Df~~Ql~~m~kmG 343 (451)
T COG0541 298 DVLSLIEKAEEVVDEEEAEKLAEKLK---KGKFTLEDFLEQLEQMKKMG 343 (451)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHccC
Confidence 34444444443444555565655553 35689999988888777653
No 232
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.00 E-value=59 Score=19.77 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCC
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLGL 48 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~ 48 (89)
+.++++|.-||. ..-...+.+++.+++..-+.
T Consensus 53 ~~fr~aF~~Fd~-~~VA~~~e~~ie~L~~d~~I 84 (179)
T TIGR00624 53 ENYRRAFSGFDI-VKVARMTDADVERLLQDDGI 84 (179)
T ss_pred HHHHHHHcCCCH-HHHhCCCHHHHHHHhcCccc
Confidence 456777877777 65566677777777665443
No 233
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=25.93 E-value=79 Score=23.49 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=29.3
Q ss_pred CCcccHHH-HHHHHHHhCCCCcHHHHHHHHHhcCCCC
Q 045293 31 DGKLRWNE-LKVALKDLGLHFSGFRAKRAVHYADVNG 66 (89)
Q Consensus 31 ~g~i~~~e-l~~~l~~~~~~~~~~~~~~~~~~~d~~~ 66 (89)
||.|+..+ |.+++-.+|..+++.-+.++|..+..++
T Consensus 538 DGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NG 574 (738)
T KOG2116|consen 538 DGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENG 574 (738)
T ss_pred CCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCC
Confidence 79999776 7888888898899888888888776543
No 234
>smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases. GEF specific for Galpha_i proteins
Probab=25.91 E-value=63 Score=13.15 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhcc
Q 045293 73 EEMNDLVKYTVKWR 86 (89)
Q Consensus 73 ~ef~~~~~~~~~~~ 86 (89)
++|..++.+.+..+
T Consensus 2 e~ffelL~r~Qs~R 15 (26)
T smart00390 2 EDLFDLLLRMQSSR 15 (26)
T ss_pred cHHHHHHHHHHhhh
Confidence 45666666655443
No 235
>PF09860 DUF2087: Uncharacterized protein conserved in bacteria (DUF2087); InterPro: IPR018656 This domain, found in various hypothetical prokaryotic proteins and transcriptional activators, has no known function.
Probab=25.88 E-value=1e+02 Score=15.62 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=8.3
Q ss_pred CcccHHHHHHHHHHh
Q 045293 32 GKLRWNELKVALKDL 46 (89)
Q Consensus 32 g~i~~~el~~~l~~~ 46 (89)
...+..|+..+|...
T Consensus 28 ~~y~E~EVN~~L~~~ 42 (71)
T PF09860_consen 28 REYSEKEVNEILKRF 42 (71)
T ss_pred CccCHHHHHHHHHHH
Confidence 344566666666544
No 236
>PRK11024 colicin uptake protein TolR; Provisional
Probab=25.77 E-value=1e+02 Score=17.57 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=20.8
Q ss_pred CCCCcccHHHHHHHHHHHHhcccCC
Q 045293 65 NGDGCVDEEEMNDLVKYTVKWRLSN 89 (89)
Q Consensus 65 ~~~g~i~~~ef~~~~~~~~~~~~~~ 89 (89)
..|+.+.|+.++.++..+.+.|.++
T Consensus 109 ~aD~~~~~~~vv~vmd~~k~aG~~~ 133 (141)
T PRK11024 109 GGAKDVPYDEIIKALNLLHSAGVKS 133 (141)
T ss_pred EcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 3567799999999999999888753
No 237
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.75 E-value=89 Score=16.57 Aligned_cols=9 Identities=33% Similarity=0.339 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 045293 36 WNELKVALK 44 (89)
Q Consensus 36 ~~el~~~l~ 44 (89)
..||..+++
T Consensus 58 ~~EL~EA~r 66 (83)
T cd06404 58 QMELEEAFR 66 (83)
T ss_pred HHHHHHHHH
Confidence 445555554
No 238
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=25.66 E-value=1.2e+02 Score=16.09 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=32.2
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
+.|.++.++...+............+..++..+.. .|.=.|..|+.++...
T Consensus 27 q~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~--rG~~Af~~F~~aL~~~ 77 (86)
T cd08785 27 QCKVLDEQDEEEVLSSPRLPIRANRTGRLLDILAT--RGKRGYVAFLESLEFY 77 (86)
T ss_pred hcCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHh--cCcchHHHHHHHHHHh
Confidence 46788888777766533322234567777777654 3455678888887644
No 239
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=25.52 E-value=1.3e+02 Score=16.77 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=33.2
Q ss_pred cccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHH
Q 045293 33 KLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMND 77 (89)
Q Consensus 33 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~ 77 (89)
.|+.+.++.++...|..+.+..++.+...+.. ++.+|.+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~idE~i~ 55 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDIDEVIK 55 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHHHHHH
Confidence 89999999999999999999999998888763 46666554
No 240
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=25.05 E-value=1.5e+02 Score=17.31 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCCC---cccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCC-C----CcccHHHHHHHHHHHH
Q 045293 19 KRYLKRYATDDKDG---KLRWNELKVALKDLGLHFSGFRAKRAVHYADVNG-D----GCVDEEEMNDLVKYTV 83 (89)
Q Consensus 19 ~~~f~~~d~~~~~g---~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~-~----g~i~~~ef~~~~~~~~ 83 (89)
+.+.+.|.. +..= ..+.+++..+......+++++++..++..++.-+ + -.|+.+-...++....
T Consensus 10 ~~L~~~y~~-dE~l~LlIWT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~~r 81 (139)
T PF07128_consen 10 RRLKRDYPN-DEPLALLIWTREDVRALADGMEYNLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIREVR 81 (139)
T ss_pred HHHHHhCCC-CCeeEEEEecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHHHH
Confidence 445555543 2211 3357777777665566788888888888776421 1 2355554455554433
No 241
>PLN02230 phosphoinositide phospholipase C 4
Probab=24.96 E-value=1.4e+02 Score=21.94 Aligned_cols=32 Identities=6% Similarity=-0.013 Sum_probs=21.7
Q ss_pred cHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHH
Q 045293 51 SGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTV 83 (89)
Q Consensus 51 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~ 83 (89)
+..++..+|..+..++ +.++.++|..++...+
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEG 58 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhC
Confidence 4457777777775333 6778888877776655
No 242
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=24.86 E-value=85 Score=14.24 Aligned_cols=44 Identities=18% Similarity=0.121 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHh
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHY 61 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 61 (89)
.+.+++..+-..|.. +. +.+..+...+...++ ++...|..+|..
T Consensus 7 ~~~~~~~~L~~~f~~-~~--~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (56)
T smart00389 7 FTPEQLEELEKEFQK-NP--YPSREEREELAAKLG--LSERQVKVWFQN 50 (56)
T ss_pred CCHHHHHHHHHHHHh-CC--CCCHHHHHHHHHHHC--cCHHHHHHhHHH
Confidence 445555555555554 34 667787777777666 667777777754
No 243
>KOG0798 consensus Uncharacterized conserved protein [Cell cycle control, cell division, chromosome partitioning]
Probab=24.69 E-value=94 Score=21.27 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=15.7
Q ss_pred cccHHHHHHHHHHHHhcccCC
Q 045293 69 CVDEEEMNDLVKYTVKWRLSN 89 (89)
Q Consensus 69 ~i~~~ef~~~~~~~~~~~~~~ 89 (89)
+++.+||+..++...-+||++
T Consensus 275 ~~~l~eF~e~W~~~lP~gm~~ 295 (380)
T KOG0798|consen 275 SFSLDEFMELWKKRLPYGMPC 295 (380)
T ss_pred cccHHHHHHHHHHhCCCCCCc
Confidence 455788888888888777764
No 244
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.39 E-value=2e+02 Score=21.18 Aligned_cols=47 Identities=26% Similarity=0.403 Sum_probs=32.6
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
++ ++.+|+. ....-.++.++-++..+|. .+|.++-+++..+++....
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~ 48 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSIS 48 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHH
Confidence 45 7777777 2223345567888888886 7888998888887765543
No 245
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=24.26 E-value=1e+02 Score=14.89 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 045293 13 PEEEQVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLV 79 (89)
Q Consensus 13 ~~~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 79 (89)
++...++++.+.- + +...++.+- ..++......+-..-..........++...|+++++..++
T Consensus 3 lP~a~vkri~k~~-~--~~~~vs~ea-~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 3 LPLARVKRIMKSD-P--DVMRVSKEA-VEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp S-HHHHHHHHHHT-S--TTSEE-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred CChHHHHHHhccC-C--CccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 4455667766652 2 223444443 3333322212222233334444445566678888776543
No 246
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=24.00 E-value=1.4e+02 Score=16.54 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHh
Q 045293 52 GFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVK 84 (89)
Q Consensus 52 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~ 84 (89)
..++..++...+ .+++=++.-.++..+.+
T Consensus 85 ~~E~~~lI~sl~----~r~~ee~l~~iL~~i~~ 113 (118)
T smart00657 85 AEEAQLLIPSLE----ERIDEEELEELLDDLSS 113 (118)
T ss_pred HHHHHHHhhhhh----ccCCHHHHHHHHHHHHH
Confidence 344555554443 23555555555544443
No 247
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=23.82 E-value=1.6e+02 Score=17.11 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=20.2
Q ss_pred HhCCCCcHHHHHHHHH----------hcCCCCCCcccHHHHHHH
Q 045293 45 DLGLHFSGFRAKRAVH----------YADVNGDGCVDEEEMNDL 78 (89)
Q Consensus 45 ~~~~~~~~~~~~~~~~----------~~d~~~~g~i~~~ef~~~ 78 (89)
.+|..++++++..++. .+-.+..|..+...|..+
T Consensus 101 klGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 101 KLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 4577777777776661 122346777776666543
No 248
>PRK00441 argR arginine repressor; Provisional
Probab=23.77 E-value=1.6e+02 Score=17.17 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=28.5
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcC
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYAD 63 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 63 (89)
..+..+.+|+...|...|...++..+.+-++.+.
T Consensus 15 ~~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~ 48 (149)
T PRK00441 15 SKEIETQEELAEELKKMGFDVTQATVSRDIKELK 48 (149)
T ss_pred HcCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcC
Confidence 3567789999999998899999999988877653
No 249
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=23.74 E-value=78 Score=13.44 Aligned_cols=17 Identities=47% Similarity=0.505 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHHhCCCC
Q 045293 34 LRWNELKVALKDLGLHF 50 (89)
Q Consensus 34 i~~~el~~~l~~~~~~~ 50 (89)
++..|++..+...|...
T Consensus 4 l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 4 LTVAELKEELKERGLST 20 (35)
T ss_dssp SHHHHHHHHHHHTTS-S
T ss_pred CcHHHHHHHHHHCCCCC
Confidence 45666777776665433
No 250
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=23.63 E-value=1.1e+02 Score=16.09 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=4.2
Q ss_pred CCCcccHHHH
Q 045293 30 KDGKLRWNEL 39 (89)
Q Consensus 30 ~~g~i~~~el 39 (89)
++|+|+.+-+
T Consensus 36 ~dG~Vpl~~i 45 (82)
T cd08032 36 RDGYIDISLL 45 (82)
T ss_pred CCCCEeHHHH
Confidence 3444444433
No 251
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=22.78 E-value=53 Score=20.13 Aligned_cols=31 Identities=13% Similarity=0.304 Sum_probs=21.2
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHHhC
Q 045293 16 EQVKRYLKRYATDDKDGKLRWNELKVALKDLG 47 (89)
Q Consensus 16 ~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~ 47 (89)
+.++++|.-||. ..--..+.+++.+++...+
T Consensus 54 e~fr~aF~~Fd~-~~VA~~~e~die~Ll~d~~ 84 (187)
T PRK10353 54 ENYRACFHQFDP-VKVAAMQEEDVERLVQDAG 84 (187)
T ss_pred HHHHHHHcCCCH-HHHhCCCHHHHHHHhcCch
Confidence 456777887877 5555667777777776544
No 252
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=22.69 E-value=2.2e+02 Score=18.14 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=27.8
Q ss_pred CCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 29 DKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
+++|.+....+..-+..+-..++..++..+-+.+
T Consensus 163 ~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 163 NGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred CCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 6789999999999999888888888877765443
No 253
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=22.30 E-value=1.1e+02 Score=16.68 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHhcccCC
Q 045293 34 LRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYTVKWRLSN 89 (89)
Q Consensus 34 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~ 89 (89)
++.+++...+.......+.. ...-...++.+.|+.+..++..+...|.++
T Consensus 73 v~~~~L~~~l~~~~~~~~~~------~~v~i~aD~~~~y~~vv~vl~~l~~~g~~~ 122 (130)
T PF02472_consen 73 VDLEELEARLKELKQKNPDP------VRVLIRADKDAPYQDVVDVLDALREAGFTK 122 (130)
T ss_dssp E-CCCHHHHHHHHCCC-TTS--------EEEEE-TTS-HHHHHHHHHHHHHTT---
T ss_pred CchHHHHHHHHHhhccCCCc------ceEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 34555666665543222221 122233456789999999999998887654
No 254
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=22.17 E-value=78 Score=13.78 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=9.3
Q ss_pred ccHHHHHHHHHHhCCCCc
Q 045293 34 LRWNELKVALKDLGLHFS 51 (89)
Q Consensus 34 i~~~el~~~l~~~~~~~~ 51 (89)
++..+++.+|...+..++
T Consensus 4 ltV~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 4 LTVAQLKRILDEHGIEFP 21 (35)
T ss_dssp --SHHHHHHHHHHT---S
T ss_pred CcHHHHHHHHHHcCCCCC
Confidence 456778888877665443
No 255
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=22.01 E-value=1.4e+02 Score=16.18 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=10.6
Q ss_pred CcccHHHHHHHHHHhC
Q 045293 32 GKLRWNELKVALKDLG 47 (89)
Q Consensus 32 g~i~~~el~~~l~~~~ 47 (89)
..++.+|+..++...|
T Consensus 34 ~p~s~~eL~~~l~~~g 49 (105)
T cd03035 34 DGLDAATLERWLAKVG 49 (105)
T ss_pred CCCCHHHHHHHHHHhC
Confidence 3457777777777655
No 256
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=21.72 E-value=1.3e+02 Score=15.12 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=32.5
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
.|.++.+|...+.. .......+..++..... .|.-.|..|+.+++..
T Consensus 28 ~~vlt~~e~e~I~~---~~t~~~k~~~LLd~l~~--kg~~a~~~F~~~L~~~ 74 (85)
T PF00619_consen 28 RGVLTEEEYEEIRS---EPTRQDKARKLLDILKR--KGPEAFDIFCQALREN 74 (85)
T ss_dssp TTSSSHHHHHHHHT---SSSHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHc---cCChHHHHHHHHHHHHH--HCHHHHHHHHHHHHhh
Confidence 67888888776554 33455667888877654 3456688888888763
No 257
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=21.54 E-value=1.4e+02 Score=23.73 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=30.6
Q ss_pred CCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCC
Q 045293 29 DKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVN 65 (89)
Q Consensus 29 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 65 (89)
--.|.|+...+..++..+|...+.+.+..+|..+..+
T Consensus 1133 VMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~ 1169 (1301)
T PF05788_consen 1133 VMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLE 1169 (1301)
T ss_pred hhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhccc
Confidence 3579999999999999999888888888877766544
No 258
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=21.41 E-value=66 Score=15.19 Aligned_cols=23 Identities=17% Similarity=0.171 Sum_probs=13.3
Q ss_pred HHHHhcCCCCCCcccHHHHHHHHH
Q 045293 21 YLKRYATDDKDGKLRWNELKVALK 44 (89)
Q Consensus 21 ~f~~~d~~~~~g~i~~~el~~~l~ 44 (89)
+|..... .+++.++..|+...+.
T Consensus 11 I~dii~~-~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 11 IPDIIHN-AGGGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHH-HTTS-BEHHHHHHTST
T ss_pred cHHHHHH-cCCCCCCHHHHHHHcC
Confidence 4555544 4457888888776554
No 259
>PF14164 YqzH: YqzH-like protein
Probab=21.37 E-value=1.3e+02 Score=15.12 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCCCCCcccHHHHHHHHHHh
Q 045293 15 EEQVKRYLKRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 15 ~~~l~~~f~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
+..++..|+.|..+...-.++..|.+.+...+
T Consensus 7 ~Kmi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 7 EKMIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 45678888888772255678888877666544
No 260
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=21.37 E-value=1.5e+02 Score=15.91 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=32.3
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
+.|.++.++...+-. ...+.+.+..++..+. ..|.-.|..|+.+++.
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp--~RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILP--SRGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHH--hhChhHHHHHHHHHHH
Confidence 467788777665443 3345667777877754 3566789999998864
No 261
>cd01671 CARD Caspase activation and recruitment domain: a protein-protein interaction domain. Caspase activation and recruitment domains (CARDs) are death domains (DDs) found associated with caspases. Caspases are aspartate-specific cysteine proteases with functions in apoptosis, immune signaling, inflammation, and host-defense mechanisms. In addition to caspases, proteins containing CARDs include adaptor proteins such as RAIDD, CARD9, and RIG-I-like helicases, which can form mutliprotein complexes and play important roles in mediating the signals to induce immune and inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.28 E-value=1.3e+02 Score=14.94 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=32.9
Q ss_pred CCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCCCCCcccHHHHHHHHHHH
Q 045293 30 KDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVNGDGCVDEEEMNDLVKYT 82 (89)
Q Consensus 30 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 82 (89)
..|.++.++...+... ......+..++..... .|.=.|..|+.+++..
T Consensus 24 ~~~vlt~~e~~~i~~~---~~~~~k~~~Lld~l~~--kg~~af~~F~~~L~~~ 71 (80)
T cd01671 24 SDGVLTEEEYEKIRSE---STRQDKARKLLDILPR--KGPKAFQSFLQALQET 71 (80)
T ss_pred HcCCCCHHHHHHHHcC---CChHHHHHHHHHHHHh--cChHHHHHHHHHHHhc
Confidence 4688888887765542 2356677888887765 4456678888888654
No 262
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=21.03 E-value=1.4e+02 Score=17.01 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=20.8
Q ss_pred CCCCcccHHHHHHHHHHHHhcccCC
Q 045293 65 NGDGCVDEEEMNDLVKYTVKWRLSN 89 (89)
Q Consensus 65 ~~~g~i~~~ef~~~~~~~~~~~~~~ 89 (89)
..++.+.|..++.++..+.+.|+.+
T Consensus 105 ~aD~~~~~~~vv~vmd~l~~aG~~~ 129 (141)
T PRK11267 105 RADKTVDYETLMKVMDTLHQAGYLK 129 (141)
T ss_pred EcCCCCCHHHHHHHHHHHHHcCCCe
Confidence 4567799999999999999888753
No 263
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=20.98 E-value=2.1e+02 Score=18.21 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhcCCC---CCCcccHHHHHHHHHHHHhccc
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYADVN---GDGCVDEEEMNDLVKYTVKWRL 87 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~---~~g~i~~~ef~~~~~~~~~~~~ 87 (89)
++..-|-.|=. .+...++.+++.+.-+... .+..|...++.. ....-.++....++.....+|-
T Consensus 147 el~~kyP~wL~-~n~~~l~~ed~~rY~~Q~~------~v~~I~~~fE~~~~~d~~~~~~~~i~~lmqemQ~~G~ 213 (248)
T PF04614_consen 147 ELRDKYPEWLE-ENKSKLSAEDYERYEKQYE------LVKEICAIFEKPPYDDEDPERREKIMELMQEMQELGQ 213 (248)
T ss_dssp HHHHHHHHHHH-HHCCCS-HHHHHHHHHHHH------HHHHHHHHHHH--TT--HHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHhHHHHH-hCcCcCCHHHHHHHHHHHH------HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHcCC
Confidence 34444444433 3455788888887666543 345555555432 2225667777888887777653
No 264
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=20.96 E-value=1.1e+02 Score=16.10 Aligned_cols=14 Identities=21% Similarity=-0.012 Sum_probs=10.9
Q ss_pred CCcccHHHHHHHHH
Q 045293 67 DGCVDEEEMNDLVK 80 (89)
Q Consensus 67 ~g~i~~~ef~~~~~ 80 (89)
.+.|+++||+.+-.
T Consensus 33 PmSIS~eeY~~LH~ 46 (81)
T PF10891_consen 33 PMSISFEEYIRLHI 46 (81)
T ss_pred ccEeeHHHHHHHHH
Confidence 46799999987754
No 265
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.92 E-value=1.5e+02 Score=19.04 Aligned_cols=11 Identities=27% Similarity=0.652 Sum_probs=4.8
Q ss_pred ccHHHHHHHHH
Q 045293 70 VDEEEMNDLVK 80 (89)
Q Consensus 70 i~~~ef~~~~~ 80 (89)
++.+|...++.
T Consensus 51 ls~~Er~~~~~ 61 (292)
T PRK03170 51 LTHEEHEELIR 61 (292)
T ss_pred CCHHHHHHHHH
Confidence 34444444443
No 266
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=20.59 E-value=2e+02 Score=16.96 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=17.2
Q ss_pred HHhcCCCCCCcccHHHHHHHHHHh
Q 045293 23 KRYATDDKDGKLRWNELKVALKDL 46 (89)
Q Consensus 23 ~~~d~~~~~g~i~~~el~~~l~~~ 46 (89)
...|. .+.++++.+|+|.++-.+
T Consensus 76 ~~le~-~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 76 NQLEE-QRGKYMTISELKTAVYQI 98 (148)
T ss_pred HHHHH-hcCCceeHHHHHHHHHHH
Confidence 44566 556679999999999754
No 267
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=20.45 E-value=1.3e+02 Score=14.68 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=10.2
Q ss_pred cccHHHHHHHHHHh-CCCCcHHHHHHHH
Q 045293 33 KLRWNELKVALKDL-GLHFSGFRAKRAV 59 (89)
Q Consensus 33 ~i~~~el~~~l~~~-~~~~~~~~~~~~~ 59 (89)
.++.+|...++..+ ...+++.++-.++
T Consensus 14 ~Ls~~e~~~~~~~i~~g~~s~~qiaAfL 41 (66)
T PF02885_consen 14 DLSREEAKAAFDAILDGEVSDAQIAAFL 41 (66)
T ss_dssp ---HHHHHHHHHHHHTTSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 44555555555433 2234444444433
No 268
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=20.24 E-value=1.6e+02 Score=18.79 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=5.6
Q ss_pred ccHHHHHHHHHH
Q 045293 70 VDEEEMNDLVKY 81 (89)
Q Consensus 70 i~~~ef~~~~~~ 81 (89)
++.+|...++..
T Consensus 50 lt~~Er~~l~~~ 61 (284)
T cd00950 50 LSDEEHEAVIEA 61 (284)
T ss_pred CCHHHHHHHHHH
Confidence 345555444443
No 269
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=20.21 E-value=1.8e+02 Score=16.20 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 17 QVKRYLKRYATDDKDGKLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 17 ~l~~~f~~~d~~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
....++..+. .....++.+|+..++. .+...++.+++.+
T Consensus 5 ~y~~L~~~~~--~~~~~vtl~elA~~l~-----cS~Rn~r~lLkkm 43 (115)
T PF12793_consen 5 QYQRLWQHYG--GQPVEVTLDELAELLF-----CSRRNARTLLKKM 43 (115)
T ss_pred HHHHHHHHcC--CCCcceeHHHHHHHhC-----CCHHHHHHHHHHH
Confidence 3444555554 3556788999888775 4556666666654
No 270
>COG1438 ArgR Arginine repressor [Transcription]
Probab=20.18 E-value=1.9e+02 Score=17.11 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=24.9
Q ss_pred CCcccHHHHHHHHHHhCCCCcHHHHHHHHHhc
Q 045293 31 DGKLRWNELKVALKDLGLHFSGFRAKRAVHYA 62 (89)
Q Consensus 31 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 62 (89)
...-+.+|+...|...|..+++..+.+.++++
T Consensus 18 ~~i~TQ~Elv~~L~~~Gi~vTQaTvSRDlkel 49 (150)
T COG1438 18 EKISTQEELVELLQEEGIEVTQATVSRDLKEL 49 (150)
T ss_pred CCCCCHHHHHHHHHHcCCeEehHHHHHHHHHc
Confidence 34447888888888888888888888887775
No 271
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=20.06 E-value=45 Score=17.83 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCCCcccHHHHHHHHH
Q 045293 64 VNGDGCVDEEEMNDLVK 80 (89)
Q Consensus 64 ~~~~g~i~~~ef~~~~~ 80 (89)
..+.++|+.++|..+++
T Consensus 49 ~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 49 RRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp -----------------
T ss_pred ccccCcCcHHHHHHHHh
Confidence 34556788888877775
No 272
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=20.01 E-value=1.8e+02 Score=17.44 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCCCCcccHHHHHHHHHH
Q 045293 52 GFRAKRAVHYADVNGDGCVDEEEMNDLVKY 81 (89)
Q Consensus 52 ~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 81 (89)
.+.+..++..-+.+.++.|++..|..+++.
T Consensus 82 ~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~ 111 (175)
T PF04876_consen 82 HSFLEHLLGGEDDSTNGLIDIGKFFDILQP 111 (175)
T ss_pred HHHHHHHhcCCcCCcccceeHHHHHHHHHH
Confidence 344555555444445677899998888874
Done!