BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045299
         (574 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VKC|A Chain A, Solution Structure Of The B3bp Smr Domain
          Length = 135

 Score = 52.0 bits (123), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 9/121 (7%)

Query: 453 KGQLHNMQMKAAHGKAQESIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSV 512
           +G LH  +MK A+  A   I+ + N   L  N      ++DLHGLHV EA+  L   L  
Sbjct: 23  QGTLHEQKMKEANHLAAIEIFEKVNASLLPQN------VLDLHGLHVDEALEHLMRVLEK 76

Query: 513 LRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVV 572
                +  G +  + +  G G+H++G     R+  AV +YL+      ++E +PG L+V+
Sbjct: 77  KTEEFKQNGGKPYLSVITGRGNHSQGG--VARIKPAVIKYLISHS-FRFSEIKPGCLKVM 133

Query: 573 I 573
           +
Sbjct: 134 L 134


>pdb|3FAU|A Chain A, Crystal Structure Of Human Small-Muts Related Domain
 pdb|3FAU|B Chain B, Crystal Structure Of Human Small-Muts Related Domain
 pdb|3FAU|C Chain C, Crystal Structure Of Human Small-Muts Related Domain
 pdb|3FAU|D Chain D, Crystal Structure Of Human Small-Muts Related Domain
          Length = 82

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 492 IDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQR 551
           +DLHGLHV EA+  L   L       +  G +  + +  G G+H++G     R+  AV +
Sbjct: 3   LDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGG--VARIKPAVIK 60

Query: 552 YLLEEEGLDYTEPQPGLLRVVI 573
           YL+      ++E +PG L+V++
Sbjct: 61  YLISHS-FRFSEIKPGCLKVML 81


>pdb|2D9I|A Chain A, Solution Structure Of The Smr Domain Of Nedd4-Binding
           Protein 2
          Length = 96

 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 484 NGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPV 543
           +G     ++DLHGLHV EA+  L   L       +  G +  + +  G G+H++G     
Sbjct: 3   SGSSGQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGG--VA 60

Query: 544 RLPIAVQRYLLEEEGLDYTEPQPGLLRVVI 573
           R+  AV +YL+      ++E +PG L+V++
Sbjct: 61  RIKPAVIKYLISHS-FRFSEIKPGCLKVML 89


>pdb|2OUX|A Chain A, Crystal Structure Of The Soluble Part Of A Magnesium
           Transporter
 pdb|2OUX|B Chain B, Crystal Structure Of The Soluble Part Of A Magnesium
           Transporter
          Length = 286

 Score = 32.7 bits (73), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 207 DMTGEIGMIEDTEMNPVEFLASQFPGFAAESLAEVYFANGCDL 249
           ++     +IE+   N  ++LA   P +AA+ LAE Y  N  DL
Sbjct: 62  ELADXFDVIEEDNENXKDYLAEXRPSYAADXLAEXYTDNAVDL 104


>pdb|3EZ9|A Chain A, Partition Protein
 pdb|3EZ9|B Chain B, Partition Protein
 pdb|3EZF|A Chain A, Partition Protein
          Length = 403

 Score = 30.8 bits (68), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 69/173 (39%), Gaps = 18/173 (10%)

Query: 126 FPASTGSGYVLSEQQELSPHHINGNSFAEKMRFSASSYGEDPTAANFLNLSPRPWDKQIL 185
            PAS   G+V S+ +EL   H+ G +  E +R +      D     F++  P   D  +L
Sbjct: 206 IPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVADDYDFIFIDTGPH-LDPFLL 264

Query: 186 ----GSDQLREGHPYNGNSRHGFVNDMTGEIGMIEDTEMNPVEFLASQFPGFAAE----- 236
                SD L    P      H  +  +T    M+E  E   VE   S   GF ++     
Sbjct: 265 NGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR 324

Query: 237 ------SLA-EVYFANGCDLNL-TIEMLTQLELQVDGGFNQNPHSKPLSSPNL 281
                 SLA EVY +N  D +L  ++   +     D   + NP S P S+  L
Sbjct: 325 DHETSHSLAREVYASNILDSSLPRLDGFERCGESFDTVISANPQSYPGSAEAL 377


>pdb|1FDR|A Chain A, Flavodoxin Reductase From E. Coli
          Length = 248

 Score = 29.6 bits (65), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 249 LNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMDFPVLTVPDGQ 295
           L  T    T+L L++DG   Q  +S  ++SP+   ++F ++TVPDG+
Sbjct: 29  LPFTAGQFTKLGLEIDGERVQRAYSY-VNSPDNPDLEFYLVTVPDGK 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,901,962
Number of Sequences: 62578
Number of extensions: 613367
Number of successful extensions: 971
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 6
length of query: 574
length of database: 14,973,337
effective HSP length: 104
effective length of query: 470
effective length of database: 8,465,225
effective search space: 3978655750
effective search space used: 3978655750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)