BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045299
(574 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2 OS=Homo sapiens GN=N4BP2 PE=1 SV=2
Length = 1770
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 9/160 (5%)
Query: 414 YSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIY 473
Y + R EA H + R + +A++AY IG K +A + +G LH +MK A+ A I+
Sbjct: 1619 YDDYRAEAFLHQQKRMECYSKAKEAYRIGKKNVATFYAQQGTLHEQKMKEANHLAAIEIF 1678
Query: 474 RQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTG 533
+ N L N ++DLHGLHV EA+ L L + G + + + G G
Sbjct: 1679 EKVNASLLPQN------VLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRG 1732
Query: 534 HHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVVI 573
+H++G R+ AV +YL+ ++E +PG L+V++
Sbjct: 1733 NHSQGGV--ARIKPAVIKYLI-SHSFRFSEIKPGCLKVML 1769
>sp|Q9UTP4|YLL3_SCHPO Smr domain-containing protein C11H11.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC11H11.03c PE=4
SV=1
Length = 206
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 18/162 (11%)
Query: 414 YSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIY 473
Y + R A A R F++A+ AY GNKA A ELS +G+L +M+ + +A +IY
Sbjct: 4 YEKFRALASKEAEKRGYLFQEAQHAYSAGNKAKAHELSQEGKLCGERMENYNRQAASAIY 63
Query: 474 RQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTG 533
L N + IDLHGL++ EA+ ++ + + R L +I VG G
Sbjct: 64 -------LYKNSQCNPDEIDLHGLYIDEAVQAVQQRIE---NCIRRGDNHL--HIIVGRG 111
Query: 534 HHTRGSRTPVRLPIAVQRYLLEEEGLDY-TEPQPGLLRVVIY 574
+H+ +R P V+ +LE++ + Y +E G R+ +Y
Sbjct: 112 NHSANHVEKLR-PAIVR--MLEQQSIKYNSEVNEG--RIYVY 148
>sp|Q08954|YP199_YEAST Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YPL199C PE=1 SV=1
Length = 240
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 18/137 (13%)
Query: 414 YSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHG---KAQE 470
Y LR A + + R+ +++ AY G+K LA ELS K + Q+K A +A E
Sbjct: 26 YQRLRRLADEAYKKRDQLSHESQTAYQQGDKKLAHELSEKSK---AQLKTAEDFNMQAAE 82
Query: 471 SIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICV 530
++ ++ N IDLHGL+V EA+ +L+ + Q+ + V
Sbjct: 83 YVF-------VENNADSSSNEIDLHGLYVKEALFILQKRIKFAIDHNEP-----QLNVIV 130
Query: 531 GTGHHTRGSRTPVRLPI 547
G G H++ ++ I
Sbjct: 131 GKGLHSQNGIAKLKPSI 147
>sp|A6L8N5|ATPA_PARD8 ATP synthase subunit alpha OS=Parabacteroides distasonis (strain
ATCC 8503 / DSM 20701 / NCTC 11152) GN=atpA PE=3 SV=1
Length = 525
Score = 36.2 bits (82), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 81/205 (39%), Gaps = 42/205 (20%)
Query: 170 ANFLNLSPRPWDKQILG-SDQLREGHPYNGNSRHGFVNDMTGEIGMIEDTEMNPVEFLAS 228
A +NL +LG +DQ++EG R ++ G IG + D NP++
Sbjct: 63 AIVMNLEEDNVGAVLLGPTDQIKEGDTVKRTGRIASIDVSEGMIGRVIDPLGNPID---- 118
Query: 229 QFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQVDGGFNQNPHSKPLSSPNLSAMD--F 286
G L T EM LE + G + P ++PL + + A+D
Sbjct: 119 ---------------GKGEILGETCEM--PLERKAPGVIFRQPVNEPLQT-GIKAVDAMI 160
Query: 287 PV------LTVPDGQTGSQKYAVDDL------QQTGNP----FRSADKENLLMFKTSSSF 330
P+ L + D QTG A+D + + GNP + + ++ + ++
Sbjct: 161 PIGRGQRELIIGDRQTGKTSIAIDTIINQRSNYEAGNPVYCIYVAIGQKGSTVAALVNTL 220
Query: 331 PSRGATDFASAVRKLASQDSGAWKY 355
+GA D+ V AS D A +Y
Sbjct: 221 QEKGAMDYTIVVSATAS-DPAAMQY 244
>sp|Q47189|EXPR_PECSS Transcriptional activator protein ExpR OS=Pectobacterium sp.
(strain SCC3193) GN=expR PE=3 SV=1
Length = 245
Score = 35.0 bits (79), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 158 FSASSYGE-DPTAANFLN-LSPRPWDKQILGSDQLREGHPYNGNSRHGFVNDMT 209
+ A++Y DP LN ++P PWD+ +L S QL+ +N + H N T
Sbjct: 58 YQANNYQHIDPVVIAALNKITPFPWDEDLLVSTQLKMSKIFNLSREHNITNGYT 111
>sp|Q28IZ3|RAB19_XENTR Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1
Length = 213
Score = 34.3 bits (77), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 364 TIGSSRSSNVSASAYNSGHGRGIYADRLQNRGSARTAPVWLETGE--AVANMYSELREEA 421
T G R ++ S Y S HG I A + R S + P W+ E AN+ L
Sbjct: 71 TAGQERFRTITQSYYRSAHG-AIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNK 129
Query: 422 RDHARLRNAYFEQA 435
D A R FE+A
Sbjct: 130 SDLAEKRQILFEEA 143
>sp|P70663|SPRL1_MOUSE SPARC-like protein 1 OS=Mus musculus GN=Sparcl1 PE=1 SV=3
Length = 650
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 27/128 (21%)
Query: 32 VPFSLRS-SSSVGSTSAT-----DATARFAG---SGSVGKAVLDRSESSISNNSDEEAHQ 82
+P S R S T+AT DAT AG + + D++E + NS+EE H+
Sbjct: 17 IPTSTRFLSDHSNPTTATLVTPEDATVPIAGVEATADIENHPSDKAEKPSALNSEEETHE 76
Query: 83 YWRHQLPDDITPDFKVLNEDESQGLGGLSL------AGLSLHDGI---------EGSRFP 127
Q D T F+V +DE G G LS+ L L +G E FP
Sbjct: 77 QSTEQ---DKTYSFEVDLKDEEDGDGDLSVDPTEGTLTLDLQEGTSEPQQKSLPENGDFP 133
Query: 128 ASTGSGYV 135
A+ + YV
Sbjct: 134 ATVSTSYV 141
>sp|Q32NQ0|RAB19_XENLA Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1
Length = 213
Score = 33.9 bits (76), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 364 TIGSSRSSNVSASAYNSGHGRGIYADRLQNRGSARTAPVWL-ETGE-AVANMYSELREEA 421
T G R ++ S Y S HG I A + R S + P W+ E G+ AN+ L
Sbjct: 71 TAGQERFRTITQSYYRSAHG-AIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNK 129
Query: 422 RDHARLRNAYFEQA 435
D A R FE+A
Sbjct: 130 SDLAEKRQILFEEA 143
>sp|P24054|SPRL1_RAT SPARC-like protein 1 OS=Rattus norvegicus GN=Sparcl1 PE=2 SV=1
Length = 634
Score = 32.3 bits (72), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 16/106 (15%)
Query: 47 ATDATARFAGSGSVGKAVLDRSESSISNNSDEEAHQYWRHQLPDDITPDFKVLNEDESQG 106
AT T + + K ++E + NS+EEAH+ Q D T F+V +DE G
Sbjct: 39 ATVPTVPAEAAADIEKHPNHKAEKPSALNSEEEAHEQSTEQ---DKTYSFEVDLKDEEDG 95
Query: 107 LGGLSLA----GLSLHDGI---------EGSRFPASTGSGYVLSEQ 139
G LS+ L L +G E + FPA+ + +V S+Q
Sbjct: 96 DGDLSVDPTERTLDLQEGTSEPQQKRLPENADFPATVSTPFVDSDQ 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,573,606
Number of Sequences: 539616
Number of extensions: 9095230
Number of successful extensions: 18290
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 18216
Number of HSP's gapped (non-prelim): 120
length of query: 574
length of database: 191,569,459
effective HSP length: 123
effective length of query: 451
effective length of database: 125,196,691
effective search space: 56463707641
effective search space used: 56463707641
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)