Query 045299
Match_columns 574
No_of_seqs 205 out of 571
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 20:56:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045299.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045299hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vkc_A NEDD4-binding protein 2 99.9 6.3E-26 2.2E-30 207.4 9.4 123 442-573 12-134 (135)
2 3fau_A NEDD4-binding protein 2 99.8 6.9E-19 2.4E-23 147.5 8.3 80 491-573 2-81 (82)
3 2d9i_A NEDD4-binding protein 2 99.7 2.2E-17 7.5E-22 142.2 10.0 86 485-573 4-89 (96)
4 3qd7_X Uncharacterized protein 99.1 6.4E-11 2.2E-15 108.9 7.4 79 487-573 45-130 (137)
5 2zqe_A MUTS2 protein; alpha/be 98.8 1.5E-08 5E-13 85.7 8.6 72 488-573 3-81 (83)
6 1wgl_A TOLL-interacting protei 96.7 0.001 3.4E-08 53.1 3.4 41 223-263 13-53 (59)
7 2dhy_A CUE domain-containing p 95.5 0.015 5.1E-07 47.6 4.7 41 222-262 21-61 (67)
8 1otr_A Protein CUE2; protein-p 95.4 0.0073 2.5E-07 46.6 2.6 37 223-259 8-44 (49)
9 1jgn_B PAIP2, polyadenylate-bi 93.4 0.025 8.6E-07 37.7 1.2 13 22-34 4-16 (26)
10 2rqh_A G1 to S phase transitio 92.6 0.046 1.6E-06 36.6 1.5 17 23-39 5-21 (26)
11 1jh4_B PAIP1, polyadenylate-bi 92.2 0.062 2.1E-06 36.3 1.8 19 20-38 2-20 (26)
12 1p3q_Q VPS9P, vacuolar protein 88.1 0.12 4.3E-06 40.6 0.7 37 223-259 16-52 (54)
13 1wj7_A Hypothetical protein (R 67.8 4.4 0.00015 35.7 3.8 35 223-258 43-77 (104)
14 3lvj_C Sulfurtransferase TUSA; 65.8 13 0.00044 30.5 6.1 68 488-573 9-78 (82)
15 2dae_A KIAA0733 protein; mitog 60.0 6.1 0.00021 32.8 3.0 37 223-259 14-50 (75)
16 1z96_A DNA-damage, UBA-domain 50.4 19 0.00066 25.1 4.1 32 223-256 8-39 (40)
17 2cp9_A EF-TS, EF-TSMT, elongat 47.6 14 0.00048 29.8 3.3 39 223-262 13-51 (64)
18 2pfc_A Hypothetical protein RV 45.2 2.2 7.5E-05 40.8 -2.1 19 81-99 108-126 (183)
19 2g3q_A Protein YBL047C; endocy 42.9 22 0.00075 25.6 3.4 26 232-257 15-40 (43)
20 1tr8_A Conserved protein (MTH1 42.5 12 0.0004 32.7 2.2 37 219-257 66-102 (102)
21 1jdq_A TM006 protein, hypothet 41.7 41 0.0014 28.7 5.5 67 489-573 26-95 (98)
22 3hz7_A Uncharacterized protein 40.9 28 0.00097 28.9 4.3 66 491-573 3-70 (87)
23 2knz_A Ubiquilin-4; cytoplasm, 36.4 31 0.001 26.3 3.5 27 232-258 22-49 (53)
24 2jy5_A Ubiquilin-1; UBA, alter 35.1 34 0.0011 26.0 3.5 32 223-256 16-48 (52)
25 1dv0_A DNA repair protein HHR2 34.5 22 0.00076 26.5 2.4 25 232-256 15-39 (47)
26 2ejs_A Autocrine motility fact 33.0 45 0.0015 26.4 4.0 33 223-256 17-49 (58)
27 1wji_A Tudor domain containing 31.7 46 0.0016 26.3 3.9 35 223-259 13-47 (63)
28 2dak_A Ubiquitin carboxyl-term 31.5 74 0.0025 24.8 5.1 27 232-258 20-46 (63)
29 1ify_A HHR23A, UV excision rep 30.6 37 0.0013 25.4 3.0 27 232-258 19-45 (49)
30 2ekf_A Ancient ubiquitous prot 28.8 52 0.0018 26.4 3.7 33 223-256 17-49 (61)
31 2i7u_A Four-alpha-helix bundle 27.9 1.2E+02 0.0043 23.5 5.6 29 416-444 3-31 (62)
32 2di0_A Activating signal coint 27.2 66 0.0022 26.5 4.2 36 223-258 17-52 (71)
33 4g3o_A E3 ubiquitin-protein li 26.7 63 0.0022 25.7 3.8 33 223-256 21-53 (58)
34 1vg5_A RSGI RUH-014, rhomboid 25.8 55 0.0019 26.9 3.5 34 223-258 33-66 (73)
35 2dkl_A Trinucleotide repeat co 25.6 1.1E+02 0.0039 25.5 5.5 29 232-260 32-60 (85)
36 1wiv_A UBP14, ubiquitin-specif 22.2 75 0.0026 25.8 3.6 26 232-257 40-65 (73)
37 2dai_A Ubadc1, ubiquitin assoc 21.6 1.7E+02 0.0058 24.3 5.8 27 232-258 40-66 (83)
38 2ekk_A UBA domain from E3 ubiq 20.9 65 0.0022 23.6 2.8 25 232-257 20-44 (47)
39 3e0j_B DNA polymerase subunit 20.2 1.1E+02 0.0037 28.1 4.7 37 496-533 31-67 (144)
40 2e2a_A Protein (enzyme IIA); h 20.1 2.7E+02 0.0092 24.2 7.0 49 424-476 17-65 (105)
No 1
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=99.92 E-value=6.3e-26 Score=207.35 Aligned_cols=123 Identities=28% Similarity=0.481 Sum_probs=91.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccCCCCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHhC
Q 045299 442 GNKALAKELSVKGQLHNMQMKAAHGKAQESIYRQRNPVELQGNGRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAG 521 (574)
Q Consensus 442 Gdka~Ak~LSekGr~~~~qmkean~kAAeaIf~~RN~~~~qG~g~~~~~~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g 521 (574)
..+++|++||++|+.|+++|+++|++||+.||++||... ..+..||||||+|+||+.+|+.+|..+....+...
T Consensus 12 ~~~~~A~~~s~~g~~~~~~~~~~~~~Aa~~If~~~N~~~------~~~~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~ 85 (135)
T 2vkc_A 12 SHMLVPRGSLQQGTLHEQKMKEANHLAAIEIFEKVNASL------LPQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNG 85 (135)
T ss_dssp -------------------CCSHHHHHHHHHHHHHHHHH------GGGTEEECTTCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC------CCCceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhC
Confidence 346799999999999999999999999999999999864 25789999999999999999999988643222223
Q ss_pred CcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCCccccCCCcEEEEEE
Q 045299 522 QRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLRVVI 573 (574)
Q Consensus 522 ~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~~f~E~n~G~L~V~L 573 (574)
....|+||||+|+||.++. ++||++|.+||. +++|+|.|.++|+++|.|
T Consensus 86 g~~~v~IIhGkG~hS~~g~--~~Lk~~V~~~L~-~~~~~~~e~g~G~~~V~L 134 (135)
T 2vkc_A 86 GKPYLSVITGRGNHSQGGV--ARIKPAVIKYLI-SHSFRFSEIKPGCLKVML 134 (135)
T ss_dssp CCSEEEEECCSCSSSCCSC--CTHHHHHHHHHH-TTTCEEEECSTTEEEEEC
T ss_pred CCeEEEEEECCCcCCCCCC--chHHHHHHHHHh-cCCCceeeCCCCeEEEEe
Confidence 3568999999999999998 999999999999 999999999999999987
No 2
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=99.77 E-value=6.9e-19 Score=147.54 Aligned_cols=80 Identities=33% Similarity=0.602 Sum_probs=61.6
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCCccccCCCcEEE
Q 045299 491 MIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEPQPGLLR 570 (574)
Q Consensus 491 ~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~~f~E~n~G~L~ 570 (574)
+|||||++|+||+.+|+++|..+............++||||+|+||.+|. ++||++|.+||. +++|+|++.++|+|+
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~~v~II~GkG~hS~~g~--~~Lk~~V~~~L~-~~~~~~~e~n~G~l~ 78 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGV--ARIKPAVIKYLI-SHSFRFSEIKPGCLK 78 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-----------CHHHHHHHHHH-HTTCCEEEEETTEEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCCCCc--chHHHHHHHHHH-hCCCceeeCCCEEEE
Confidence 69999999999999999999986532222233578999999999999998 999999999999 999999999999999
Q ss_pred EEE
Q 045299 571 VVI 573 (574)
Q Consensus 571 V~L 573 (574)
|.|
T Consensus 79 V~l 81 (82)
T 3fau_A 79 VML 81 (82)
T ss_dssp EEC
T ss_pred EEe
Confidence 986
No 3
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=99.71 E-value=2.2e-17 Score=142.19 Aligned_cols=86 Identities=31% Similarity=0.599 Sum_probs=73.9
Q ss_pred CCCCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCCccccC
Q 045299 485 GRGQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEP 564 (574)
Q Consensus 485 g~~~~~~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~~f~E~ 564 (574)
+...+.+||||||+|+||+.+|+.+|..+............|+||||+|+||.++. ++||++|.+||. +++++|.+.
T Consensus 4 ~~~~~~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~~v~IIhGkG~hS~~g~--~~Lk~~V~~~L~-~~~~~~~eg 80 (96)
T 2d9i_A 4 GSSGQNVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGV--ARIKPAVIKYLI-SHSFRFSEI 80 (96)
T ss_dssp CCCSCCEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECCCSGGGTTCT--TCHHHHHHHHHH-HTTCCEECC
T ss_pred CCCCCCeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEECcCCCCCCCc--chHHHHHHHHHh-hCCCccccC
Confidence 34578999999999999999999999886432221223468999999999999998 999999999999 999999888
Q ss_pred CCcEEEEEE
Q 045299 565 QPGLLRVVI 573 (574)
Q Consensus 565 n~G~L~V~L 573 (574)
++|+++|.|
T Consensus 81 g~Ga~~V~L 89 (96)
T 2d9i_A 81 KPGCLKVML 89 (96)
T ss_dssp STTCEEEEC
T ss_pred CCcEEEEEE
Confidence 999999987
No 4
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=99.13 E-value=6.4e-11 Score=108.92 Aligned_cols=79 Identities=22% Similarity=0.195 Sum_probs=65.9
Q ss_pred CCceeeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCC--ccc--
Q 045299 487 GQDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGL--DYT-- 562 (574)
Q Consensus 487 ~~~~~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~--~f~-- 562 (574)
..+.+|||||++++||+..|..+|.... ..| ...|+||||+|.||.++. ++||.+|.+||. ++.+ .|.
T Consensus 45 ~~~~~LDLHG~~~~EA~~~L~~fL~~a~----~~g-~r~V~IIHGKG~gs~~~~--~vLk~~V~~wL~-~~~~V~~f~~a 116 (137)
T 3qd7_X 45 PQQASLNLLRQPVEECRKMVFSFIQQAL----ADG-LRNVLIIHGKGRDDKSHA--NIVRSYVARWLT-EFDDVQAYCTA 116 (137)
T ss_dssp CGGGEEECTTCCHHHHHHHHHHHHHHHH----HTT-CSEEEEECCCCSSTTSHH--HHHHHHHHHHHH-TSTTEEEEEEC
T ss_pred CCCeEEECCCCCHHHHHHHHHHHHHHHH----HCC-CCEEEEEECCCCCCCCch--HHHHHHHHHHHh-cCCceeEEeec
Confidence 3578999999999999999999998853 234 368999999999999886 899999999999 7653 343
Q ss_pred ---cCCCcEEEEEE
Q 045299 563 ---EPQPGLLRVVI 573 (574)
Q Consensus 563 ---E~n~G~L~V~L 573 (574)
+-+.|+++|.|
T Consensus 117 ~~~~GG~Gat~V~L 130 (137)
T 3qd7_X 117 LPHHGGSGACYVAL 130 (137)
T ss_dssp CGGGTGGGEEEEEE
T ss_pred CccCCCCEEEEEEE
Confidence 34689999987
No 5
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=98.79 E-value=1.5e-08 Score=85.66 Aligned_cols=72 Identities=25% Similarity=0.360 Sum_probs=57.1
Q ss_pred CceeeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCC--cccc--
Q 045299 488 QDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGL--DYTE-- 563 (574)
Q Consensus 488 ~~~~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~--~f~E-- 563 (574)
.+.+|||||++++||...|+.+|.... ..| ...|.||+|+|. .+||.+|.+||. ++.. .|..
T Consensus 3 ~~~~lDLhG~~~~eA~~~l~~fl~~a~----~~g-~~~v~IIHGkG~--------GvLr~~V~~~L~-~~~~V~~f~~a~ 68 (83)
T 2zqe_A 3 EVKEVDLRGLTVAEALLEVDQALEEAR----ALG-LSTLRLLHGKGT--------GALRQAIREALR-RDKRVESFADAP 68 (83)
T ss_dssp -CCEEECTTCCHHHHHHHHHHHHHHHH----HTT-CSEEEEECCSTT--------SHHHHHHHHHHH-HCTTEEEEEECC
T ss_pred CccEEECCCCCHHHHHHHHHHHHHHHH----HCC-CCEEEEEECCCc--------hHHHHHHHHHHh-cCCceeEEEEcC
Confidence 367899999999999999999998853 234 468999999995 379999999999 6653 3432
Q ss_pred ---CCCcEEEEEE
Q 045299 564 ---PQPGLLRVVI 573 (574)
Q Consensus 564 ---~n~G~L~V~L 573 (574)
-..|+++|.|
T Consensus 69 ~~~GG~Gat~V~L 81 (83)
T 2zqe_A 69 PGEGGHGVTVVAL 81 (83)
T ss_dssp TTTTGGGEEEEEE
T ss_pred cccCCCEEEEEEE
Confidence 2379999987
No 6
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.70 E-value=0.001 Score=53.14 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=38.1
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHhhhhhh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQV 263 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~lE~~~ 263 (574)
|++|...||.+..+.|..+|.+|++++++||++|.++..+.
T Consensus 13 l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~ 53 (59)
T 1wgl_A 13 LKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEP 53 (59)
T ss_dssp HHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCC
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCC
Confidence 99999999999999999999999999999999997766553
No 7
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.49 E-value=0.015 Score=47.59 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=37.1
Q ss_pred chhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHhhhhh
Q 045299 222 PVEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQ 262 (574)
Q Consensus 222 plefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~lE~~ 262 (574)
-|+.|...||.+..+.|..++.+|++++++||+.|.++-.+
T Consensus 21 ~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ms~~ 61 (67)
T 2dhy_A 21 AMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQMNLE 61 (67)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhcCCC
Confidence 38999999999999999999999999999999999555543
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=95.44 E-value=0.0073 Score=46.62 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=35.1
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHhh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQL 259 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~l 259 (574)
+.+|+..||.++.+.|..++-++++|++.+|.+|-+.
T Consensus 8 v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 8 LSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 8999999999999999999999999999999999544
No 9
>1jgn_B PAIP2, polyadenylate-binding protein-interacting protein 2; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens}
Probab=93.38 E-value=0.025 Score=37.65 Aligned_cols=13 Identities=69% Similarity=0.994 Sum_probs=11.5
Q ss_pred cccCCCccccccc
Q 045299 22 TALNPNAAEFVPF 34 (574)
Q Consensus 22 t~lnpnaaefvp~ 34 (574)
..|||+|.||||-
T Consensus 4 s~lnp~akef~pg 16 (26)
T 1jgn_B 4 SNLNPNAKEFVPG 16 (26)
T ss_dssp CSSCTTCCCCCTT
T ss_pred ccCCcchhhcCCC
Confidence 4799999999995
No 10
>2rqh_A G1 to S phase transition 1; protein-protein complex, GTP-binding, nucleotide-binding, Al splicing, cytoplasm, methylation, mRNA processing; NMR {Mus musculus}
Probab=92.57 E-value=0.046 Score=36.62 Aligned_cols=17 Identities=53% Similarity=0.614 Sum_probs=14.1
Q ss_pred ccCCCcccccccccccC
Q 045299 23 ALNPNAAEFVPFSLRSS 39 (574)
Q Consensus 23 ~lnpnaaefvp~~~r~~ 39 (574)
--|=+|+|||||+|+.+
T Consensus 5 VPnv~a~eFvpsfl~gs 21 (26)
T 2rqh_A 5 VPNVHAAEFVPSFLRGP 21 (26)
T ss_dssp CCCTTCCCSSCCCSCSC
T ss_pred cCcchHHHhhHhhccCc
Confidence 34778999999999864
No 11
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=92.23 E-value=0.062 Score=36.26 Aligned_cols=19 Identities=37% Similarity=0.433 Sum_probs=15.8
Q ss_pred cccccCCCccccccccccc
Q 045299 20 KATALNPNAAEFVPFSLRS 38 (574)
Q Consensus 20 ~~t~lnpnaaefvp~~~r~ 38 (574)
|..+|-|||+||+|+-+.+
T Consensus 2 ~~S~LS~~ApeF~Psgys~ 20 (26)
T 1jh4_B 2 LMSKLSVNAPEFYPSGYSS 20 (26)
T ss_dssp CCCCSSCCCSCCCCTTCCC
T ss_pred cccccCcCCceeccCcccc
Confidence 4567999999999998763
No 12
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=88.10 E-value=0.12 Score=40.61 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=28.7
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHhh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQL 259 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~l 259 (574)
++=|.+.||.+..+-|.+++.+|++.+.+||+.|-++
T Consensus 16 ~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 16 LNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 6778999999999999999999999999999999554
No 13
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=67.79 E-value=4.4 Score=35.75 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=33.0
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQ 258 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~ 258 (574)
|..|+..| |++.+.+..|++.++.||..+|+.|-.
T Consensus 43 Vk~L~Emt-G~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 43 VKQLIDIT-GKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHT-CCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHhh-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 89999998 999999999999999999999999943
No 14
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=65.77 E-value=13 Score=30.48 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=49.9
Q ss_pred CceeeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCCccc--cCC
Q 045299 488 QDRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYT--EPQ 565 (574)
Q Consensus 488 ~~~~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~~f~--E~n 565 (574)
.+..||+-|+.=.+-+-.+++.|..+. .| ..|.|++-- +--..-|.+|+. +.|+.+. +..
T Consensus 9 ~~~~lD~rGl~CP~Pvl~~kkal~~l~-----~G--~~l~V~~dd----------~~a~~di~~~~~-~~G~~~~~~~~~ 70 (82)
T 3lvj_C 9 PDHTLDALGLRCPEPVMMVRKTVRNMQ-----PG--ETLLIIADD----------PATTRDIPGFCT-FMEHELVAKETD 70 (82)
T ss_dssp CSEEEECTTCCTTHHHHHHHHHHHTSC-----TT--CEEEEEECC----------TTHHHHHHHHHH-HTTCEEEEEECS
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHhCC-----CC--CEEEEEECC----------ccHHHHHHHHHH-HCCCEEEEEEec
Confidence 467899999999999999998887652 33 357777632 223456999999 9999984 345
Q ss_pred CcEEEEEE
Q 045299 566 PGLLRVVI 573 (574)
Q Consensus 566 ~G~L~V~L 573 (574)
.|.+.+.|
T Consensus 71 ~~~~~i~I 78 (82)
T 3lvj_C 71 GLPYRYLI 78 (82)
T ss_dssp SSSEEEEE
T ss_pred CCEEEEEE
Confidence 67777665
No 15
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.98 E-value=6.1 Score=32.83 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=33.8
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHhh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQL 259 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~l 259 (574)
+.=|+.|||-++..-|++.--.|+..|++-|++|.|-
T Consensus 14 fheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qE 50 (75)
T 2dae_A 14 LHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQE 50 (75)
T ss_dssp HHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHH
T ss_pred HHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHh
Confidence 5568999999999999999999999999999999764
No 16
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=50.44 E-value=19 Score=25.10 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=27.9
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEML 256 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L 256 (574)
|+-|++. ||+.+....++.+++++++.+|+.|
T Consensus 8 i~~L~~m--Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 8 IAQLVSM--GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHT--TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5556665 8999999999999999999999887
No 17
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=47.63 E-value=14 Score=29.84 Aligned_cols=39 Identities=15% Similarity=0.103 Sum_probs=35.2
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHhhhhh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQLELQ 262 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~lE~~ 262 (574)
|..|+.+| |.++.....|+..+++|+..+|+.|-+....
T Consensus 13 Vk~LRe~T-Gag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~~ 51 (64)
T 2cp9_A 13 LMKLRRKT-GYSFVNCKKALETCGGDLKQAEIWLHKEAQK 51 (64)
T ss_dssp HHHHHHHH-CCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHHHHHhHH
Confidence 99999999 8999999999999999999999999655433
No 18
>2pfc_A Hypothetical protein RV0098/MT0107; thioesterase, virulence, unknown function; HET: PLM; 2.30A {Mycobacterium tuberculosis}
Probab=45.17 E-value=2.2 Score=40.78 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=16.4
Q ss_pred HHHHHhhCCCCCCCCcccc
Q 045299 81 HQYWRHQLPDDITPDFKVL 99 (574)
Q Consensus 81 ~~~w~~qlpddi~pdf~~~ 99 (574)
-+||++||||=+|-+|+.-
T Consensus 108 ddf~~rQLsdiLI~~~~S~ 126 (183)
T 2pfc_A 108 DDYCQHQLSSMLIRKASSR 126 (183)
T ss_dssp HHHHHHHHHHEEEEEECCE
T ss_pred HHHHHHhccceeehhhhhh
Confidence 4799999999999997654
No 19
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=42.90 E-value=22 Score=25.62 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHH
Q 045299 232 GFAAESLAEVYFANGCDLNLTIEMLT 257 (574)
Q Consensus 232 g~s~esl~s~Y~aNg~sl~aTI~~L~ 257 (574)
||+.+.+..|+.+++.+++.+++.|-
T Consensus 15 GF~~~~a~~AL~~~~~n~e~A~~~L~ 40 (43)
T 2g3q_A 15 GFTEEEAHNALEKCNWDLEAATNFLL 40 (43)
T ss_dssp TSCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCcCHHHHHHHHH
Confidence 89999999999999999999999984
No 20
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=42.47 E-value=12 Score=32.75 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=32.9
Q ss_pred CCCchhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Q 045299 219 EMNPVEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLT 257 (574)
Q Consensus 219 ~~dplefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~ 257 (574)
..| +++|++++ |+|.+....|+-.|++|+-.+|-.|+
T Consensus 66 ~ed-i~lv~~q~-~vs~~~A~~aL~~~~gDiv~Ai~~Lt 102 (102)
T 1tr8_A 66 EDD-IELVMNQT-GASREDATRALQETGGDLAEAIMRLS 102 (102)
T ss_dssp HHH-HHHHHHHH-CCCHHHHHHHHHHTTTCHHHHHHHC-
T ss_pred HHH-HHHHHHHh-CCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 456 99999999 89999999999999999999987763
No 21
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=41.70 E-value=41 Score=28.66 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=47.9
Q ss_pred ceeeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCCccccC--C-
Q 045299 489 DRMIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYTEP--Q- 565 (574)
Q Consensus 489 ~~~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~~f~E~--n- 565 (574)
+..||+-||.=.+-+-.+++.|..+. .| ..|.|++-- +--..-|.+|+. +.|+.+... .
T Consensus 26 ~~~LD~rGl~CP~Pvl~tkkaL~~l~-----~G--e~L~Vl~dd----------~~a~~dI~~~~~-~~G~~v~~~e~~~ 87 (98)
T 1jdq_A 26 TKTLDVRGEVCPVPDVETKRALQNMK-----PG--EILEVWIDY----------PMSKERIPETVK-KLGHEVLEIEEVG 87 (98)
T ss_dssp CEEEECSSCCSSHHHHHHHHHHHTCC-----TT--CEEEEEESS----------CTHHHHHHHHHH-HSSCCEEEEEECS
T ss_pred CEEEeCCCCCCCHHHHHHHHHHHhCC-----CC--CEEEEEECC----------ccHHHHHHHHHH-HCCCEEEEEEEec
Confidence 35799999999999999998887752 33 357777533 222456999999 999998432 3
Q ss_pred CcEEEEEE
Q 045299 566 PGLLRVVI 573 (574)
Q Consensus 566 ~G~L~V~L 573 (574)
.|.+.|.|
T Consensus 88 ~g~~~i~I 95 (98)
T 1jdq_A 88 PSEWKIYI 95 (98)
T ss_dssp SSCEEEEE
T ss_pred CCEEEEEE
Confidence 57666665
No 22
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=40.91 E-value=28 Score=28.94 Aligned_cols=66 Identities=24% Similarity=0.209 Sum_probs=47.9
Q ss_pred eeecCCCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCCCCCCCCCCCCCcHHHHHHHHHhcCCCccc--cCCCcE
Q 045299 491 MIDLHGLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTGHHTRGSRTPVRLPIAVQRYLLEEEGLDYT--EPQPGL 568 (574)
Q Consensus 491 ~IDLHGLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G~HS~gG~~~arLkpAV~~~L~~e~g~~f~--E~n~G~ 568 (574)
.||+-|+.=..-+-.+++.|..+. ..| ..|.|++-- +--..-|.+|+. +.|+.+. +...|.
T Consensus 3 ~lD~rGl~CP~Pvl~~kkal~~l~----~~G--~~L~V~~dd----------~~a~~dI~~~~~-~~G~~v~~~~~~~g~ 65 (87)
T 3hz7_A 3 TIDALGQVCPIPVIRAKKALAELG----EAG--GVVTVLVDN----------DISRQNLQKMAE-GMGYQSEYLEKDNGV 65 (87)
T ss_dssp EEECTTCCTTHHHHHHHHHHHTTG----GGC--CEEEEEESS----------HHHHHHHHHHHH-HHTCEEEEEECGGGC
T ss_pred EEEcCCCCCCHHHHHHHHHHHhcc----CCC--CEEEEEECC----------ccHHHHHHHHHH-HCCCEEEEEEecCCE
Confidence 599999999999999998887651 034 357777632 223457999999 9999884 345788
Q ss_pred EEEEE
Q 045299 569 LRVVI 573 (574)
Q Consensus 569 L~V~L 573 (574)
+.|.|
T Consensus 66 ~~i~I 70 (87)
T 3hz7_A 66 IEVTI 70 (87)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77776
No 23
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=36.37 E-value=31 Score=26.29 Aligned_cols=27 Identities=37% Similarity=0.517 Sum_probs=24.3
Q ss_pred CC-cHHHHHHHHHHcCCCHHHHHHHHHh
Q 045299 232 GF-AAESLAEVYFANGCDLNLTIEMLTQ 258 (574)
Q Consensus 232 g~-s~esl~s~Y~aNg~sl~aTI~~L~~ 258 (574)
|| ..+....|+.+++++++.+|+.|-.
T Consensus 22 GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 22 GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 78 8888999999999999999999943
No 24
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=35.09 E-value=34 Score=26.01 Aligned_cols=32 Identities=38% Similarity=0.543 Sum_probs=26.7
Q ss_pred hhhhhhcCCCC-cHHHHHHHHHHcCCCHHHHHHHH
Q 045299 223 VEFLASQFPGF-AAESLAEVYFANGCDLNLTIEML 256 (574)
Q Consensus 223 lefl~s~fpg~-s~esl~s~Y~aNg~sl~aTI~~L 256 (574)
|+-|... || ..+.+..|+.+++++++.+|+.|
T Consensus 16 l~~L~~M--GF~~~~~~~~AL~~t~gn~e~A~e~L 48 (52)
T 2jy5_A 16 LEQLSAM--GFLNREANLQALIATGGDINAAIERL 48 (52)
T ss_dssp HHHHHHT--TCCCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHc--CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 4445543 78 88888999999999999999998
No 25
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=34.46 E-value=22 Score=26.55 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=24.0
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHH
Q 045299 232 GFAAESLAEVYFANGCDLNLTIEML 256 (574)
Q Consensus 232 g~s~esl~s~Y~aNg~sl~aTI~~L 256 (574)
||+...+..||.+++.+++.++..|
T Consensus 15 GF~~~~a~~Al~a~~~n~e~A~~~L 39 (47)
T 1dv0_A 15 GFPESLVIQAYFACEKNENLAANFL 39 (47)
T ss_dssp TCCHHHHHHHHTTTTSCHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 8999999999999999999999988
No 26
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.96 E-value=45 Score=26.44 Aligned_cols=33 Identities=9% Similarity=0.165 Sum_probs=31.0
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEML 256 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L 256 (574)
++-|...||-++.+.+..-+..+| |+++||+-+
T Consensus 17 v~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienI 49 (58)
T 2ejs_A 17 AHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNI 49 (58)
T ss_dssp HHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHH
Confidence 788999999999999999998888 999999988
No 27
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.67 E-value=46 Score=26.33 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=28.6
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHhh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQL 259 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~l 259 (574)
|+-|... ||+.+.+..|+.+++.+++.+++.|..-
T Consensus 13 I~~L~~M--GF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 13 LKHITEM--GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4444443 8999999999999999999999999543
No 28
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.54 E-value=74 Score=24.82 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHh
Q 045299 232 GFAAESLAEVYFANGCDLNLTIEMLTQ 258 (574)
Q Consensus 232 g~s~esl~s~Y~aNg~sl~aTI~~L~~ 258 (574)
||+.+....|+.+++.+++.+++.|..
T Consensus 20 GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 20 GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 899999999999999999999999954
No 29
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=30.64 E-value=37 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHh
Q 045299 232 GFAAESLAEVYFANGCDLNLTIEMLTQ 258 (574)
Q Consensus 232 g~s~esl~s~Y~aNg~sl~aTI~~L~~ 258 (574)
||+.+.+..|+.+++.+++.+++.|..
T Consensus 19 GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 19 GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 899999999999999999999999843
No 30
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.77 E-value=52 Score=26.38 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=30.9
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEML 256 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L 256 (574)
++-|...||-++.+.+..-+..+| |+++||+-+
T Consensus 17 v~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienI 49 (61)
T 2ekf_A 17 AQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNL 49 (61)
T ss_dssp HHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHH
Confidence 788999999999999999998888 999999988
No 31
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=27.92 E-value=1.2e+02 Score=23.53 Aligned_cols=29 Identities=28% Similarity=0.178 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Q 045299 416 ELREEARDHARLRNAYFEQARQAYLIGNK 444 (574)
Q Consensus 416 e~R~eA~~~a~~Rne~f~kAaqAyrrGdk 444 (574)
++|++|.++.....++-++|+.-..-|.+
T Consensus 3 klreeaaklfeewkklaeeaakllegggg 31 (62)
T 2i7u_A 3 KLREEAAKLFEEWKKLAEEAAKLLEGGGG 31 (62)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999998888776653
No 32
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=27.16 E-value=66 Score=26.50 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=33.9
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQ 258 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~ 258 (574)
|..|..-||.|....|......++.+.+.+|..|-+
T Consensus 17 I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 17 ISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 889999999999999999999999999999999943
No 33
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=26.72 E-value=63 Score=25.70 Aligned_cols=33 Identities=9% Similarity=0.153 Sum_probs=30.3
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHH
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEML 256 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L 256 (574)
++-|..-||-++.+.+..-...+ +|+++||+-+
T Consensus 21 ve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienI 53 (58)
T 4g3o_A 21 AHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNI 53 (58)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHH
Confidence 78899999999999999999887 8999999977
No 34
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=25.83 E-value=55 Score=26.86 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=28.4
Q ss_pred hhhhhhcCCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Q 045299 223 VEFLASQFPGFAAESLAEVYFANGCDLNLTIEMLTQ 258 (574)
Q Consensus 223 lefl~s~fpg~s~esl~s~Y~aNg~sl~aTI~~L~~ 258 (574)
|.-|... ||+.+.+..|+.+++.+++.+|+.|..
T Consensus 33 I~~L~eM--GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 33 IQKLVAM--GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHTT--TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4444443 899999999999999999999999943
No 35
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=25.57 E-value=1.1e+02 Score=25.53 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=26.0
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhhh
Q 045299 232 GFAAESLAEVYFANGCDLNLTIEMLTQLE 260 (574)
Q Consensus 232 g~s~esl~s~Y~aNg~sl~aTI~~L~~lE 260 (574)
||+.+.+..|+..++.+++.+++.|-.-.
T Consensus 32 GF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 32 GFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 89999999999999999999999995533
No 36
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.24 E-value=75 Score=25.80 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHH
Q 045299 232 GFAAESLAEVYFANGCDLNLTIEMLT 257 (574)
Q Consensus 232 g~s~esl~s~Y~aNg~sl~aTI~~L~ 257 (574)
||+.+.+..|+.+++.+++.+++.|.
T Consensus 40 GF~~~~a~~AL~~t~~nve~Ave~L~ 65 (73)
T 1wiv_A 40 GFAEDVARKALKASGGDIEKATDWVF 65 (73)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 89999999999999999999999994
No 37
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.60 E-value=1.7e+02 Score=24.33 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=25.3
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHh
Q 045299 232 GFAAESLAEVYFANGCDLNLTIEMLTQ 258 (574)
Q Consensus 232 g~s~esl~s~Y~aNg~sl~aTI~~L~~ 258 (574)
||+.+.+..|+.+++.+++.+++.|..
T Consensus 40 GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 40 GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 899999999999999999999999954
No 38
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.90 E-value=65 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.9
Q ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHH
Q 045299 232 GFAAESLAEVYFANGCDLNLTIEMLT 257 (574)
Q Consensus 232 g~s~esl~s~Y~aNg~sl~aTI~~L~ 257 (574)
||+.+....|+.++| +++.+++.|.
T Consensus 20 GF~~~~a~~AL~~~~-n~e~A~~~L~ 44 (47)
T 2ekk_A 20 GFTREHAMEALLNTS-TMEQATEYLL 44 (47)
T ss_dssp HCCHHHHHHHHHHSC-SHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcC-CHHHHHHHHH
Confidence 789999999999997 9999999984
No 39
>3e0j_B DNA polymerase subunit delta-3; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=20.24 E-value=1.1e+02 Score=28.14 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 045299 496 GLHVSEAIHVLKHELSVLRSTARAAGQRLQVYICVGTG 533 (574)
Q Consensus 496 GLhV~EAv~iLk~~L~~Lr~~ar~~g~~~~L~IITG~G 533 (574)
++||..|.++|.++...-+.. ...+...-.++|||.-
T Consensus 31 ~VhvN~AK~mL~ef~~~~~k~-~~~~~v~atYlvsG~~ 67 (144)
T 3e0j_B 31 GVHVNQAKQMLYDYVERKRKE-NSGAQLHVTYLVSGSL 67 (144)
T ss_dssp TCCHHHHHHHHHHHHHHHHHH-HSSCSCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccc-CCCCceEEEEEEEEEE
Confidence 678999999999999874321 1123456789999974
No 40
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.13 E-value=2.7e+02 Score=24.19 Aligned_cols=49 Identities=22% Similarity=0.180 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045299 424 HARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMQMKAAHGKAQESIYRQR 476 (574)
Q Consensus 424 ~a~~Rne~f~kAaqAyrrGdka~Ak~LSekGr~~~~qmkean~kAAeaIf~~R 476 (574)
-+..|..+ -+|-++.+.||...|..+-++|++. ..++|..=.+-|-++-
T Consensus 17 aG~ArS~~-~eAl~~Ak~g~fe~A~~~l~eA~~~---l~~AH~~Qt~liq~Ea 65 (105)
T 2e2a_A 17 AGDARSKL-LEALKAAENGDFAKADSLVVEAGSC---IAEAHSSQTGMLAREA 65 (105)
T ss_dssp HHHHHHHH-HHHHHHHHTTCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 34556544 4788889999999999999888864 4455555455554444
Done!