BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045300
         (166 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
 pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
           Acetobutylicum
          Length = 461

 Score = 26.9 bits (58), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 74  DEDFRELVRANSMKILASQNQIGHLEFHRTKNQEAAAGKNHMPRSNSSAAIGRIDEDKPC 133
           D + ++ V+ N MKIL  +  I   +F   + +   AGK      + S  +G   +D+ C
Sbjct: 206 DGEEKQKVKHNIMKILNEKYDISEEDFVSAELEIVPAGKARDYGFDRSMVMGYGQDDRIC 265

Query: 134 ---DFEDDLQMKPA 144
               FE  L+MK A
Sbjct: 266 AYTSFEAMLEMKNA 279


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.128    0.353 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,890,799
Number of Sequences: 62578
Number of extensions: 122994
Number of successful extensions: 189
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 1
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)