BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045300
         (166 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P50520|VPS34_SCHPO Phosphatidylinositol 3-kinase vps34 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=vps34 PE=2 SV=2
          Length = 801

 Score = 34.3 bits (77), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)

Query: 89  LASQNQIGHLEFHRTKNQEAAA----GKNHMPRSNSSAAIGRIDEDKPCDFEDDLQM-KP 143
           L  ++ I    F+ T+N++A             S  + A+  +D     D +D L++  P
Sbjct: 284 LEEKDLIWKFRFYLTRNKKAMTKFLKSVVWTDSSEVNQALSLLDSWTEIDIDDALELLSP 343

Query: 144 AVVFPRSKSYAVSRRSTAA 162
           + V P+ ++YAVSR  TA+
Sbjct: 344 SFVHPKVRAYAVSRLETAS 362


>sp|A5CEN6|IF2_ORITB Translation initiation factor IF-2 OS=Orientia tsutsugamushi
          (strain Boryong) GN=infB PE=3 SV=1
          Length = 848

 Score = 30.4 bits (67), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 3  SEKRNKEGNNKLSRYLKAPVKMLI----KARDFYIRSITACSDSVVFSSAGGVPIGSVNT 58
          ++K N+EG  K    LK P KM+I     ++ F     T+ ++SV     GG    S ++
Sbjct: 2  TDKHNEEGKEK---KLKLPSKMIIGKHVDSKKFKTSYFTSHNNSVTVEIKGGRKFSSSSS 58

Query: 59 LPRSYSTNSSRSSRGDEDFRELVRANSM 86
          LP   +T  S     +E    L +A S 
Sbjct: 59 LPHKINTQISTIDEFNEKISLLKKAASF 86


>sp|P35384|CASR_BOVIN Extracellular calcium-sensing receptor OS=Bos taurus GN=CASR PE=2
            SV=1
          Length = 1085

 Score = 30.0 bits (66), Expect = 6.5,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 118  SNSSAAIGRIDEDKPCDFEDDLQMKPAVVFPRSKSYAVS 156
            S  +   G + ED   + ED  +M PA+V   S+S+ +S
Sbjct: 1034 SQETGLQGPVGEDHQLEMEDPEEMSPALVVSNSRSFVIS 1072


>sp|P30673|GH_MUHVS Envelope glycoprotein H OS=Murid herpesvirus 1 (strain Smith)
          GN=gH PE=3 SV=2
          Length = 725

 Score = 29.6 bits (65), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 33 IRSITACSDSVVFSSAGGVPIGSVNTLPRSYSTNSSRSSRGDEDFRELVRANSMKILASQ 92
          I SI  CS  VV+++    P  S NT+ + +S N SR  R DE   + V   +M     Q
Sbjct: 6  ILSIALCSTRVVYAAGAEAPRISRNTV-KLHSYNESRVCRHDESSNQTVSHAAMFTFNFQ 64

Query: 93 NQIGH 97
          +  G+
Sbjct: 65 DGDGY 69


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.125    0.343 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,518,693
Number of Sequences: 539616
Number of extensions: 1897435
Number of successful extensions: 3391
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3387
Number of HSP's gapped (non-prelim): 23
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)