Query 045300
Match_columns 166
No_of_seqs 62 out of 64
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:57:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3esi_A Uncharacterized protein 19.9 29 0.00099 25.9 0.6 11 124-134 119-129 (129)
2 4gqr_A Pancreatic alpha-amylas 14.2 81 0.0028 26.1 2.1 29 60-90 64-92 (496)
3 3egr_A Phenylacetate-COA oxyge 8.0 94 0.0032 22.5 0.3 20 21-40 33-52 (96)
4 3oq4_A DBF4, protein DNA52; DD 7.9 83 0.0028 24.1 -0.0 13 22-34 72-84 (134)
5 3oq0_A DBF4, protein DNA52; DD 7.7 85 0.0029 24.5 -0.0 12 23-34 90-101 (151)
6 4ayb_C DNA-directed RNA polyme 6.6 42 0.0014 28.7 -2.6 55 28-84 55-114 (395)
7 3tq7_B Microtubule-associated 6.3 3.4E+02 0.012 18.9 2.6 21 18-38 13-33 (82)
8 4e61_A Protein BIM1; EB1-like 5.8 3.6E+02 0.012 19.7 2.6 21 18-38 30-50 (106)
9 1kn7_A RCK4, voltage-gated pot 5.5 1.7E+02 0.0059 20.3 0.6 11 37-47 14-24 (78)
10 3e1r_A Centrosomal protein of 5.3 2.5E+02 0.0085 18.7 1.2 12 27-38 30-41 (58)
No 1
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum}
Probab=19.89 E-value=29 Score=25.91 Aligned_cols=11 Identities=45% Similarity=0.936 Sum_probs=5.6
Q ss_pred eeeccCCCCCc
Q 045300 124 IGRIDEDKPCD 134 (166)
Q Consensus 124 mGRIDED~PCe 134 (166)
+++||||.||.
T Consensus 119 l~~~~~~~~~~ 129 (129)
T 3esi_A 119 LTPIMEDNPCQ 129 (129)
T ss_dssp EEETTC-----
T ss_pred EEEeCCCCCCC
Confidence 79999999993
No 2
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=14.22 E-value=81 Score=26.12 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=21.9
Q ss_pred CccccccCCCCCCCchhHHHHHHHhhhhhcc
Q 045300 60 PRSYSTNSSRSSRGDEDFRELVRANSMKILA 90 (166)
Q Consensus 60 PrSfS~~ssr~~~~deD~~eLvRAAS~R~~g 90 (166)
|.+|.++ +|.++ .|||++||.+|=+|.+.
T Consensus 64 ~~dy~i~-~~~Gt-~~df~~lv~~aH~~Gi~ 92 (496)
T 4gqr_A 64 PVSYKLC-TRSGN-EDEFRNMVTRCNNVGVR 92 (496)
T ss_dssp BSCSCSC-BTTBC-HHHHHHHHHHHHHTTCE
T ss_pred ccCceeC-CCCCC-HHHHHHHHHHHHHCCCE
Confidence 5667766 45443 89999999999988664
No 3
>3egr_A Phenylacetate-COA oxygenase subunit PAAB; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; 2.65A {Ralstonia eutropha JMP134}
Probab=7.97 E-value=94 Score=22.55 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=15.1
Q ss_pred HHHHHHhhhhHHHHhhHhhc
Q 045300 21 PVKMLIKARDFYIRSITACS 40 (166)
Q Consensus 21 P~R~L~kARD~YVRsmt~Ca 40 (166)
+=-+|..|||+|.|-.-+++
T Consensus 33 ~e~Al~~Ar~~f~RR~e~vs 52 (96)
T 3egr_A 33 AQQALHMARDVYTRRQEGVS 52 (96)
T ss_dssp HHHHHHHHHHHTTTTCTTCE
T ss_pred HHHHHHHHHHHhccccCCce
Confidence 45689999999999654443
No 4
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=7.86 E-value=83 Score=24.10 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=10.8
Q ss_pred HHHHHhhhhHHHH
Q 045300 22 VKMLIKARDFYIR 34 (166)
Q Consensus 22 ~R~L~kARD~YVR 34 (166)
-=||.|||++|||
T Consensus 72 ~DIL~rAr~~~mK 84 (134)
T 3oq4_A 72 TDILSRAKKNYMK 84 (134)
T ss_dssp TSHHHHHHHTTCE
T ss_pred chHHHHHHHcCCe
Confidence 3489999999876
No 5
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=7.73 E-value=85 Score=24.52 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=10.4
Q ss_pred HHHHhhhhHHHH
Q 045300 23 KMLIKARDFYIR 34 (166)
Q Consensus 23 R~L~kARD~YVR 34 (166)
=||.|||++|||
T Consensus 90 DIL~rAr~~~mK 101 (151)
T 3oq0_A 90 DILSRAKKNYMK 101 (151)
T ss_dssp SHHHHHHHTTCE
T ss_pred hHHHHHHHcCCe
Confidence 489999999876
No 6
>4ayb_C DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_C 4b1o_C 4b1p_Y 2waq_C 2wb1_C 3hkz_C 2pmz_C
Probab=6.60 E-value=42 Score=28.69 Aligned_cols=55 Identities=24% Similarity=0.294 Sum_probs=29.4
Q ss_pred hhhHHHHhhHhhccCCcc--ccCCCCCCccccccCccccccCCC---CCCCchhHHHHHHHh
Q 045300 28 ARDFYIRSITACSDSVVF--SSAGGVPIGSVNTLPRSYSTNSSR---SSRGDEDFRELVRAN 84 (166)
Q Consensus 28 ARD~YVRsmt~Ca~~~~~--g~~~g~P~~~~~~lPrSfS~~ssr---~~~~deD~~eLvRAA 84 (166)
...-|.|++..=+..||. .-+.|.|++|+ || |+|-.+=.. -+-+-..+.||+.|.
T Consensus 55 ~~~~y~r~lv~pGEAVGiIAAQSIGEPgTQl-TL-rTFH~gGva~~nvT~GlPRl~Ei~~a~ 114 (395)
T 4ayb_C 55 AIKEYSEGLIAPGEAIGIVAAQSVGEPGTQM-TL-RTFHFAGIRELNVTLGLPRLIEIVDAK 114 (395)
T ss_dssp HHHHHHHTBCCTTCCHHHHHHHHHHHHHHTC-C--------------CCCSHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCCchHhHHHHhhcCCchhhh-cc-ccceeeeecceeeecCccceEEecccc
Confidence 334588887555555553 22589999999 99 999864211 112357899999743
No 7
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=6.35 E-value=3.4e+02 Score=18.85 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=16.5
Q ss_pred hhhHHHHHHhhhhHHHHhhHh
Q 045300 18 LKAPVKMLIKARDFYIRSITA 38 (166)
Q Consensus 18 ~~aP~R~L~kARD~YVRsmt~ 38 (166)
|+.-+--|-|-||||-.....
T Consensus 13 Lk~~ve~lEkERDFYF~KLRd 33 (82)
T 3tq7_B 13 LKLTVDGLEKERDFYFSKLRD 33 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999877654
No 8
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=5.82 E-value=3.6e+02 Score=19.69 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.8
Q ss_pred hhhHHHHHHhhhhHHHHhhHh
Q 045300 18 LKAPVKMLIKARDFYIRSITA 38 (166)
Q Consensus 18 ~~aP~R~L~kARD~YVRsmt~ 38 (166)
|+.-+.-|-|-||||-....+
T Consensus 30 Lk~~ve~lEkERDFYF~KLRd 50 (106)
T 4e61_A 30 YKGTVSTLEIEREFYFNKLRD 50 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999877655
No 9
>1kn7_A RCK4, voltage-gated potassium channel protein KV1.4; inactivation domain, membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1 PDB: 1zto_A*
Probab=5.49 E-value=1.7e+02 Score=20.26 Aligned_cols=11 Identities=9% Similarity=0.549 Sum_probs=8.2
Q ss_pred HhhccCCcccc
Q 045300 37 TACSDSVVFSS 47 (166)
Q Consensus 37 t~Ca~~~~~g~ 47 (166)
.||..+++||.
T Consensus 14 sgcnsh~pygy 24 (78)
T 1kn7_A 14 SGCNSHMPYGY 24 (78)
T ss_dssp TTTSCCCCCSG
T ss_pred ccccccCCchH
Confidence 47888888766
No 10
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=5.31 E-value=2.5e+02 Score=18.68 Aligned_cols=12 Identities=25% Similarity=0.742 Sum_probs=8.9
Q ss_pred hhhhHHHHhhHh
Q 045300 27 KARDFYIRSITA 38 (166)
Q Consensus 27 kARD~YVRsmt~ 38 (166)
--|..||+|+..
T Consensus 30 qqReayV~gll~ 41 (58)
T 3e1r_A 30 QQREVYVKGLLA 41 (58)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 357889998864
Done!