Query 045300
Match_columns 166
No_of_seqs 62 out of 64
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 20:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045300.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045300hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hx0a2 c.1.8.1 (A:1-403) Anim 16.1 32 0.0023 26.1 2.1 30 59-90 63-92 (403)
2 d1g94a2 c.1.8.1 (A:1-354) Bact 14.7 37 0.0027 25.3 2.1 29 60-90 52-80 (354)
3 d1gcya2 c.1.8.1 (A:1-357) G4-a 13.8 47 0.0034 24.3 2.4 28 61-90 81-108 (357)
4 d1jaea2 c.1.8.1 (A:1-378) Anim 12.3 30 0.0022 26.1 0.9 29 60-90 62-90 (378)
5 d1k8wa3 b.122.1.1 (A:251-312) 11.0 37 0.0027 20.6 0.9 9 123-131 43-51 (62)
6 d1vlpa2 c.1.17.2 (A:150-415) N 8.6 18 0.0013 28.1 -1.8 46 16-65 41-87 (266)
7 d1wu9a1 a.245.1.1 (A:191-249) 8.2 1.2E+02 0.0089 18.4 2.6 21 18-38 13-33 (59)
8 d1eh9a3 c.1.8.1 (A:91-490) Gly 7.0 1.3E+02 0.0092 22.1 2.7 18 73-90 76-93 (400)
9 d2dlka1 g.37.1.1 (A:8-37) Zinc 6.9 51 0.0037 17.7 0.2 8 132-139 2-9 (30)
10 d1q5wa_ g.41.11.1 (A:) Npl4 {R 6.8 74 0.0054 17.3 0.8 27 35-62 5-31 (31)
No 1
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=16.10 E-value=32 Score=26.12 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=22.2
Q ss_pred cCccccccCCCCCCCchhHHHHHHHhhhhhcc
Q 045300 59 LPRSYSTNSSRSSRGDEDFRELVRANSMKILA 90 (166)
Q Consensus 59 lPrSfS~~ssr~~~~deD~~eLvRAAS~R~~g 90 (166)
.|..|.++ ++.++ .|||++||.+|=++.+.
T Consensus 63 ~~~dY~v~-~~~Gt-~~dfk~Lv~~aH~~GI~ 92 (403)
T d1hx0a2 63 QPVSYKLC-TRSGN-ENEFRDMVTRCNNVGVR 92 (403)
T ss_dssp SBSCSCSC-BTTBC-HHHHHHHHHHHHHTTCE
T ss_pred cCCCCccC-CCCCC-HHHHHHHHHHHHhcCCE
Confidence 35567765 45444 89999999999988664
No 2
>d1g94a2 c.1.8.1 (A:1-354) Bacterial alpha-amylase {Pseudoalteromonas haloplanktis (Alteromonas haloplanktis) [TaxId: 228]}
Probab=14.73 E-value=37 Score=25.30 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=21.0
Q ss_pred CccccccCCCCCCCchhHHHHHHHhhhhhcc
Q 045300 60 PRSYSTNSSRSSRGDEDFRELVRANSMKILA 90 (166)
Q Consensus 60 PrSfS~~ssr~~~~deD~~eLvRAAS~R~~g 90 (166)
|..|.+. ++.++ .+||++||.+|-++.+.
T Consensus 52 ~~dy~vd-~~~Gt-~~dfk~LV~~aH~~GI~ 80 (354)
T d1g94a2 52 PVSYELQ-SRGGN-RAQFIDMVNRCSAAGVD 80 (354)
T ss_dssp BSCSCSC-BTTBC-HHHHHHHHHHHHHTTCE
T ss_pred CCcceeC-CCCCC-HHHHHHHHHHHhccCce
Confidence 4557655 34333 89999999999998653
No 3
>d1gcya2 c.1.8.1 (A:1-357) G4-amylase (1,4-alpha-D-glucan maltotetrahydrolase) {Pseudomonas stutzeri [TaxId: 316]}
Probab=13.82 E-value=47 Score=24.29 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=20.0
Q ss_pred ccccccCCCCCCCchhHHHHHHHhhhhhcc
Q 045300 61 RSYSTNSSRSSRGDEDFRELVRANSMKILA 90 (166)
Q Consensus 61 rSfS~~ssr~~~~deD~~eLvRAAS~R~~g 90 (166)
..|.+. .+. +..+||++||.+|=+|.+.
T Consensus 81 ~dy~vd-~~~-Gt~~df~~LV~~aH~~GI~ 108 (357)
T d1gcya2 81 HDFNKN-GRY-GSDAQLRQAASALGGAGVK 108 (357)
T ss_dssp SSSCSC-SSS-CCHHHHHHHHHHHHHTTCE
T ss_pred hhcccC-ccC-CCHHHHHHHHHHHHhcCCe
Confidence 346554 333 3379999999999998763
No 4
>d1jaea2 c.1.8.1 (A:1-378) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=12.31 E-value=30 Score=26.10 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=21.1
Q ss_pred CccccccCCCCCCCchhHHHHHHHhhhhhcc
Q 045300 60 PRSYSTNSSRSSRGDEDFRELVRANSMKILA 90 (166)
Q Consensus 60 PrSfS~~ssr~~~~deD~~eLvRAAS~R~~g 90 (166)
|..|.+. ++.+ ..+||++||.+|=+|.+.
T Consensus 62 ~~dY~id-~~~G-t~~df~~LV~~aH~~GI~ 90 (378)
T d1jaea2 62 PVSYIIN-TRSG-DESAFTDMTRRCNDAGVR 90 (378)
T ss_dssp BCCSCSE-ETTE-EHHHHHHHHHHHHHTTCE
T ss_pred CccceeC-CCCC-CHHHHHHHHHHHHhcCce
Confidence 4556655 3433 379999999999988664
No 5
>d1k8wa3 b.122.1.1 (A:251-312) Pseudouridine synthase II TruB, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.97 E-value=37 Score=20.58 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=8.2
Q ss_pred ceeeccCCC
Q 045300 123 AIGRIDEDK 131 (166)
Q Consensus 123 gmGRIDED~ 131 (166)
|||.||||.
T Consensus 43 GiGei~~~g 51 (62)
T d1k8wa3 43 GMGEIDDEG 51 (62)
T ss_dssp EEEEECTTS
T ss_pred EEEEECCCC
Confidence 899999986
No 6
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.62 E-value=18 Score=28.14 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=30.7
Q ss_pred ehhhhHHHHHHhhhhHHHHhhHhhccCCccccCCCCCC-ccccccCccccc
Q 045300 16 RYLKAPVKMLIKARDFYIRSITACSDSVVFSSAGGVPI-GSVNTLPRSYST 65 (166)
Q Consensus 16 ri~~aP~R~L~kARD~YVRsmt~Ca~~~~~g~~~g~P~-~~~~~lPrSfS~ 65 (166)
+++..|...|.-+|..|+-+..|+|.-.. +--+|.|. | |+|++|--
T Consensus 41 ~v~q~~~~~~~~~raa~iggf~gTSNv~a-a~~~gip~~G---TmAHs~v~ 87 (266)
T d1vlpa2 41 LIMQGIMKAVNGNPDRNKSLLLGTSNILF-AKKYGVKPIG---TVAHEWVM 87 (266)
T ss_dssp HHHHHHHHHHHHSHHHHTTTEEEESBHHH-HHHHTCCBCC---CCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHhcCcCccccHHHH-HHHcCCCCcc---chHHHHHH
Confidence 34567888899999999987777664322 22356564 5 67888753
No 7
>d1wu9a1 a.245.1.1 (A:191-249) Microtubule-associated protein EB1, C-terminal dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.17 E-value=1.2e+02 Score=18.37 Aligned_cols=21 Identities=43% Similarity=0.616 Sum_probs=16.2
Q ss_pred hhhHHHHHHhhhhHHHHhhHh
Q 045300 18 LKAPVKMLIKARDFYIRSITA 38 (166)
Q Consensus 18 ~~aP~R~L~kARD~YVRsmt~ 38 (166)
++.-+..|-|-||||-....+
T Consensus 13 lk~~v~~lEkERdFYF~KLRd 33 (59)
T d1wu9a1 13 LKLTVEDLEKERDFYFGKLRN 33 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356678899999999876654
No 8
>d1eh9a3 c.1.8.1 (A:91-490) Glycosyltrehalose trehalohydrolase, central domain {Archaeon Sulfolobus solfataricus, km1 [TaxId: 2287]}
Probab=6.97 E-value=1.3e+02 Score=22.10 Aligned_cols=18 Identities=44% Similarity=0.573 Sum_probs=15.3
Q ss_pred CchhHHHHHHHhhhhhcc
Q 045300 73 GDEDFRELVRANSMKILA 90 (166)
Q Consensus 73 ~deD~~eLvRAAS~R~~g 90 (166)
..|||++||++|=+|.+.
T Consensus 76 t~~dlk~lv~~~h~~gi~ 93 (400)
T d1eh9a3 76 GPEGFRKLVDEAHKKGLG 93 (400)
T ss_dssp CHHHHHHHHHHHHHTTCE
T ss_pred CHHHHHHHHHHHHhcCCc
Confidence 379999999999988654
No 9
>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.95 E-value=51 Score=17.74 Aligned_cols=8 Identities=50% Similarity=0.949 Sum_probs=5.8
Q ss_pred CCcccccc
Q 045300 132 PCDFEDDL 139 (166)
Q Consensus 132 PCeF~ed~ 139 (166)
||+|.+-+
T Consensus 2 ~cdf~gc~ 9 (30)
T d2dlka1 2 PCDFPGCG 9 (30)
T ss_dssp ECSSTTTC
T ss_pred CCCCCCch
Confidence 79997543
No 10
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.79 E-value=74 Score=17.29 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=14.6
Q ss_pred hhHhhccCCccccCCCCCCccccccCcc
Q 045300 35 SITACSDSVVFSSAGGVPIGSVNTLPRS 62 (166)
Q Consensus 35 smt~Ca~~~~~g~~~g~P~~~~~~lPrS 62 (166)
.||.|..-.-- ...|.-...+..|||+
T Consensus 5 amWsC~HCTf~-N~pgtd~CeMC~LPrt 31 (31)
T d1q5wa_ 5 AMWACQHCTFM-NQPGTGHCEMCSLPRT 31 (31)
T ss_dssp CCEECSSSCCE-ECTTCSBCTTTCCBCC
T ss_pred ceeEeeeeeee-cCCCCCcchhhccCCC
Confidence 36666554322 2244445566788875
Done!