BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045303
(1206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 86/335 (25%), Positives = 140/335 (41%), Gaps = 57/335 (17%)
Query: 109 NLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS-I 167
L+ + G+ ++I+GM G GK+ LA D + G VS V + KS +
Sbjct: 142 KLKGEPGW--VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS----VGKQDKSGL 195
Query: 168 LESIANVTVDDNNLNSLQVKL-------KERL------SGKKFLLVLDDVWNENYIRWSE 214
L + N+ + S +L K+RL + LL+LDDVW+ ++ +
Sbjct: 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFD 255
Query: 215 LRCPFVAGAAGSKIVVTTRNLVVAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRH 274
+C +I++TTR+ V + + P Y + S L +SL +
Sbjct: 256 SQC---------QILLTTRDKSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVN--MKK 303
Query: 275 QSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKN----DIWNLRDSD---- 326
L E I+ +C G PL +G LL RD P WE+ LK +R S
Sbjct: 304 ADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFKRIRKSSSYDY 361
Query: 327 --ILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMED 384
+ A+ +S L +K + S+ KD + + + +LW E ++ED
Sbjct: 362 EALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEVED 413
Query: 385 LGREFVRELHSRSLFQQSSKGAS-RFVMHDLINDL 418
+ +EFV ++SL G S R+ +HDL D
Sbjct: 414 ILQEFV----NKSLLFCDRNGKSFRYYLHDLQVDF 444
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 63/337 (18%)
Query: 110 LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK---- 165
L+ + G+ ++I+GM G GK+ LA + V+ H ++G C V K
Sbjct: 149 LKGEPGW--VTIHGMAGCGKSVLAA-----EAVRDHSLLEG--CFPGGVHWVSVGKQDKS 199
Query: 166 SILESIANVTVDDNNLNSLQVKL-------KERL------SGKKFLLVLDDVWNENYIRW 212
+L + N+ + S +L K+RL + LL+LDDVW+ ++
Sbjct: 200 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA 259
Query: 213 SELRCPFVAGAAGSKIVVTTRNLVVAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFT 272
+ +C +I++TTR+ V + + P Y + S L +SL
Sbjct: 260 FDSQC---------QILLTTRDKSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVN--M 307
Query: 273 RHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKN----DIWNLRDSD-- 326
+ L E I+ +C G PL +G LL RD P WE+ LK +R S
Sbjct: 308 KKADLPEQAHSIIKECKGSPLVVSLIGALL--RDFPNRWEYYLKQLQNKQFKRIRKSSSY 365
Query: 327 ----ILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKM 382
+ A+ +S L +K + S+ KD + + + +LW E ++
Sbjct: 366 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------TEEV 417
Query: 383 EDLGREFVRELHSRSLFQQSSKGAS-RFVMHDLINDL 418
ED+ +EFV ++SL G S R+ +HDL D
Sbjct: 418 EDILQEFV----NKSLLFCDRNGKSFRYYLHDLQVDF 450
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 136/328 (41%), Gaps = 61/328 (18%)
Query: 119 ISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK----SILESIANV 174
++I GM G GK+ LA + V+ H ++G C S + K +L + N+
Sbjct: 150 VTIYGMAGCGKSVLAA-----EAVRDHSLLEG--CFSGGVHWVSIGKQDKSGLLMKLQNL 202
Query: 175 TVDDNNLNSLQVKL-------KERL------SGKKFLLVLDDVWNENYIRWSELRCPFVA 221
+ + S +L K+RL + LL+LDDVW+ ++ + +C
Sbjct: 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQC---- 258
Query: 222 GAAGSKIVVTTRNLVVAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVG 281
+I++TTR+ V + + P + + S L +SL + + L
Sbjct: 259 -----QILLTTRDKSVTDSVMG-PKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEA 310
Query: 282 EQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKN----DIWNLRDSD------ILPAL 331
I+ +C G PL +G LL RD P W + L+ +R S + A+
Sbjct: 311 HSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAM 368
Query: 332 RVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMEDLGREFVR 391
+S L +K + S+ KD + + + +LW E ++ED+ +EFV
Sbjct: 369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------TEEVEDILQEFV- 419
Query: 392 ELHSRSLFQQSSKGASR-FVMHDLINDL 418
++SL + G S + +HDL D
Sbjct: 420 ---NKSLLFCNRNGKSFCYYLHDLQVDF 444
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 77/328 (23%), Positives = 135/328 (41%), Gaps = 61/328 (18%)
Query: 119 ISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK----SILESIANV 174
++I GM G GK+ LA + V+ H ++G C S + K +L + N+
Sbjct: 157 VTIYGMAGCGKSVLAA-----EAVRDHSLLEG--CFSGGVHWVSIGKQDKSGLLMKLQNL 209
Query: 175 TVDDNNLNSLQVKL-------KERL------SGKKFLLVLDDVWNENYIRWSELRCPFVA 221
+ + S +L K+RL + LL+LDDVW+ ++ + +C
Sbjct: 210 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQC---- 265
Query: 222 GAAGSKIVVTTRNLVVAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVG 281
+I++TT + V + + P + + S L +SL + + L
Sbjct: 266 -----QILLTTSDKSVTDSVMG-PKHVVPVESGLGREKGLEILSLFVN--MKKEDLPAEA 317
Query: 282 EQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKN----DIWNLRDSD------ILPAL 331
I+ +C G PL +G LL RD P W + L+ +R S + A+
Sbjct: 318 HSIIKECKGSPLVVSLIGALL--RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAM 375
Query: 332 RVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMEDLGREFVR 391
+S L +K + S+ KD + + + +LW E ++ED+ +EFV
Sbjct: 376 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE--------TEEVEDILQEFV- 426
Query: 392 ELHSRSLFQQSSKGASR-FVMHDLINDL 418
++SL + G S + +HDL D
Sbjct: 427 ---NKSLLFCNRNGKSFCYYLHDLQVDF 451
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 984 SLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSL 1043
+L +H+L L+++ + C L ++P L L + DC NL LP +H LT L
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Query: 1044 LDLDIRGCPSVVSFP 1058
LD+RGC ++ P
Sbjct: 280 EKLDLRGCVNLSRLP 294
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 12/148 (8%)
Query: 983 KSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTK-------LTELTIWDCE--NLKAL 1033
++LPA + +L+ L+++ I CP L PE L ST L L E +++L
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 1034 PNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRR 1093
P + NL +L L IR P P L+ L++RG + P F L+R
Sbjct: 199 PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKR 257
Query: 1094 FTICGGCPDLVSLPPFPASLTGLEISDM 1121
I C +L++LP LT LE D+
Sbjct: 258 L-ILKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 510 YSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGN 569
++ I SLP I NL++L+ L + + + L +I+ L L + L C L+ G
Sbjct: 192 WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251
Query: 570 LTKLRHLRNSNADELEEMPKGFGKLTCL 597
L+ L + L +P +LT L
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 62/174 (35%), Gaps = 19/174 (10%)
Query: 992 LHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGC 1051
L HLQ I L P+ L LT+ L+ALP + +L L +L IR C
Sbjct: 103 LSHLQHXTIDAA-GLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRAC 160
Query: 1052 PSVVSFPEDGFPT----------NLQSLEVRGLKI-SKPLPEWGFNRFTSL--RRFTICG 1098
P + PE T NLQSL + I S P SL R +
Sbjct: 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA 220
Query: 1099 GCPDLVSLPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFP 1152
P + LP L L++ L I LK L L DC L P
Sbjct: 221 LGPAIHHLP----KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
>pdb|2AAZ|A Chain A, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|B Chain B, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|C Chain C, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|D Chain D, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|E Chain E, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|F Chain F, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|G Chain G, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|H Chain H, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|I Chain I, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|J Chain J, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|K Chain K, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|L Chain L, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|M Chain M, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|N Chain N, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|O Chain O, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|P Chain P, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
Length = 317
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 5/151 (3%)
Query: 447 RHFSYSCGECDGEKRLKSVSDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFS 506
RHF + DG+ + K V ++R+ + N +D R AW+ + L LP +F
Sbjct: 132 RHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMF- 190
Query: 507 LCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQIL--PESINSLYNL-HTILLEDCWKLKKL 563
C + + G+ L CL R+ L P +I S L H I L + +
Sbjct: 191 -CQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEF 249
Query: 564 CKDMGNLTKLRHLRNSNADELEEMPKGFGKL 594
MG+ R +LE P+ F KL
Sbjct: 250 ILQMGDAHVYRDHVEPLKTQLEREPRDFPKL 280
>pdb|2JHH|C Chain C, Structure Of Globular Heads Of M-Ficolin At Acidic Ph
pdb|2JHH|F Chain F, Structure Of Globular Heads Of M-Ficolin At Acidic Ph
pdb|2JHL|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With
Sialic Acid
pdb|2JHM|F Chain F, Structure Of Globular Heads Of M-Ficolin At Neutral Ph
Length = 218
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 546 LYNLHTILLEDCWKLKKLC---KDMGNLTKLRHLRNSNAD---ELEEMPKGFGKLTCLLT 599
L HTI L DC L LC D G T + + + D + +GFG
Sbjct: 20 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGS-----Q 74
Query: 600 LGRFVVGKD-----SGSGLRELKS-LTHLRGTLEISKLENVKDVGDASEAQL 645
LG F +G D + G EL++ L G + +K ++ K +A + +L
Sbjct: 75 LGEFWLGNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADEAEKYKL 126
>pdb|2JHI|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N-
Acetyl-D-Galactosamine
pdb|2JHK|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N-
Acetyl-D-Glucosamine
Length = 218
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 17/112 (15%)
Query: 546 LYNLHTILLEDCWKLKKLC---KDMGNLTKLRHLRNSNAD---ELEEMPKGFGKLTCLLT 599
L HTI L DC L LC D G T + + + D + +GFG
Sbjct: 20 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGS-----Q 74
Query: 600 LGRFVVGKD-----SGSGLRELKS-LTHLRGTLEISKLENVKDVGDASEAQL 645
LG F +G D + G EL++ L G + +K ++ K +A + +L
Sbjct: 75 LGEFWLGNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADEAEKYKL 126
>pdb|2WNP|F Chain F, M-Ficolin Mutant Y271f
Length = 217
Score = 31.2 bits (69), Expect = 4.0, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 546 LYNLHTILLEDCWKLKKLC---KDMGNLTKLRHLRNSNAD---ELEEMPKGFGKLTCLLT 599
L HTI L DC L LC D G T + + + D + +GFG
Sbjct: 19 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGS-----Q 73
Query: 600 LGRFVVGKD-----SGSGLRELK-SLTHLRGTLEISKLENVKDVGDASEAQL 645
LG F +G D + G EL+ L G + +K ++ K +A + +L
Sbjct: 74 LGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKL 125
>pdb|2D39|A Chain A, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
pdb|2D39|B Chain B, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
pdb|2D39|C Chain C, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
Length = 237
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 17/112 (15%)
Query: 546 LYNLHTILLEDCWKLKKLC---KDMGNLTKLRHLRNSNAD---ELEEMPKGFGKLTCLLT 599
L HTI L DC L LC D G T + + + D + +GFG
Sbjct: 16 LSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGS-----Q 70
Query: 600 LGRFVVGKD-----SGSGLRELK-SLTHLRGTLEISKLENVKDVGDASEAQL 645
LG F +G D + G EL+ L G + +K ++ K +A + +L
Sbjct: 71 LGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKL 122
>pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
pdb|3EYP|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
Length = 469
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 201 LDDVWNENYIRWSELRCPFVAGAAGS--KIVVTTRNLVVAER---MRADPVYQLKKLSDD 255
+D+ ++ N +R ++++ V GA S K++ +N A + ++AD ++ L K +
Sbjct: 319 IDETFSTNLLRGAKVKATNVRGAKYSPEKMLDNEKNTYFAGKDGEVKADIIFTLPKTIEF 378
Query: 256 DCLCVLTQISLGAR 269
DCL + I LG R
Sbjct: 379 DCLMIEEVIELGHR 392
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 481 DYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIF-SLPNEIGNLKHLRCLNLSRTRIQI- 538
D +N L+ + K + +P L + +L G+++I S+P+E+G+L+ L L+LS ++
Sbjct: 638 DMSYNMLSGYIPKEI-GSMPYLFILNL-GHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 695
Query: 539 LPESINSLYNLHTILLED 556
+P+++++L L I L +
Sbjct: 696 IPQAMSALTMLTEIDLSN 713
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 492 LKMLLNHLPRLRVFSLCGYSNIFSL-PNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNL 549
LK+L +PR V L N F+L P E+ N KHL ++LS RI L +S +++ L
Sbjct: 22 LKVLPKGIPR-DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 550 HTILLE 555
T++L
Sbjct: 81 LTLILS 86
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 4/78 (5%)
Query: 481 DYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIF-SLPNEIGNLKHLRCLNLSRTRIQI- 538
D +N L+ + K + +P L + +L G+++I S+P+E+G+L+ L L+LS ++
Sbjct: 635 DMSYNMLSGYIPKEI-GSMPYLFILNL-GHNDISGSIPDEVGDLRGLNILDLSSNKLDGR 692
Query: 539 LPESINSLYNLHTILLED 556
+P+++++L L I L +
Sbjct: 693 IPQAMSALTMLTEIDLSN 710
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 27/125 (21%)
Query: 500 PRLRVFSLCGYS-NIFSLPNEIGNLKHLRCLNLSRTRI--------------QILPESIN 544
PR + SL S + +P +I L LR L LS RI + L S N
Sbjct: 52 PRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110
Query: 545 SLYNL---------HTILLEDCWKLKKLCKDMGNLTKLRHLRNSNAD--ELEEMPKGFGK 593
L N+ H L + + + +CK+ GNLTKL L S A +L+ +P
Sbjct: 111 RLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLH 170
Query: 594 LTCLL 598
L+C+L
Sbjct: 171 LSCIL 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,133,828
Number of Sequences: 62578
Number of extensions: 1377528
Number of successful extensions: 2883
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 2848
Number of HSP's gapped (non-prelim): 49
length of query: 1206
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1096
effective length of database: 8,089,757
effective search space: 8866373672
effective search space used: 8866373672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)