Query 045303
Match_columns 1206
No_of_seqs 709 out of 5142
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 11:52:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.3E-74 9.2E-79 688.6 43.3 703 2-730 37-798 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.6E-58 3.4E-63 591.2 55.9 691 86-901 181-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.2E-38 2.6E-43 411.9 26.3 486 493-1127 86-584 (968)
4 PF00931 NB-ARC: NB-ARC domain 100.0 7.1E-39 1.5E-43 352.3 15.3 276 94-376 1-285 (287)
5 PLN00113 leucine-rich repeat r 100.0 1E-37 2.3E-42 403.1 26.2 509 445-1082 70-589 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 4.1E-31 8.9E-36 268.8 -13.9 465 496-1099 64-538 (565)
7 KOG4194 Membrane glycoprotein 99.9 6E-28 1.3E-32 257.1 5.1 135 969-1106 293-431 (873)
8 KOG4194 Membrane glycoprotein 99.9 1.6E-27 3.5E-32 253.8 3.2 128 969-1098 317-448 (873)
9 KOG0618 Serine/threonine phosp 99.9 5.6E-28 1.2E-32 272.3 -6.2 220 967-1197 285-510 (1081)
10 KOG0472 Leucine-rich repeat pr 99.9 6.7E-27 1.5E-31 238.3 -7.5 230 491-742 82-313 (565)
11 KOG0618 Serine/threonine phosp 99.9 4.1E-26 8.9E-31 257.3 -6.9 321 706-1099 158-486 (1081)
12 KOG0444 Cytoskeletal regulator 99.9 1.1E-25 2.4E-30 241.2 -4.1 365 498-1058 5-379 (1255)
13 KOG0444 Cytoskeletal regulator 99.9 4.6E-25 1E-29 236.4 -5.5 368 522-1153 5-380 (1255)
14 PLN03210 Resistant to P. syrin 99.9 2.9E-21 6.2E-26 248.6 22.2 111 992-1108 777-887 (1153)
15 KOG4237 Extracellular matrix p 99.6 4.6E-17 9.9E-22 167.1 -2.7 53 971-1027 446-498 (498)
16 PRK15387 E3 ubiquitin-protein 99.6 6.7E-15 1.4E-19 174.4 13.2 256 500-842 201-458 (788)
17 PRK15387 E3 ubiquitin-protein 99.6 2.9E-14 6.2E-19 169.1 15.9 52 681-738 203-254 (788)
18 PRK04841 transcriptional regul 99.6 2.3E-13 5E-18 176.0 25.3 297 85-423 10-332 (903)
19 KOG4237 Extracellular matrix p 99.5 1.9E-15 4.2E-20 155.3 -1.8 325 685-1077 52-399 (498)
20 PRK15370 E3 ubiquitin-protein 99.4 2.3E-13 5.1E-18 162.9 10.4 181 500-738 178-358 (754)
21 COG2909 MalT ATP-dependent tra 99.4 4.8E-12 1E-16 144.7 20.2 300 85-425 15-340 (894)
22 KOG0617 Ras suppressor protein 99.4 4E-15 8.7E-20 134.4 -3.8 101 498-600 31-132 (264)
23 PRK00411 cdc6 cell division co 99.4 9.4E-11 2E-15 135.1 26.0 300 86-402 27-358 (394)
24 PRK15370 E3 ubiquitin-protein 99.3 2.6E-12 5.6E-17 154.0 9.7 182 500-739 199-380 (754)
25 KOG0617 Ras suppressor protein 99.3 2E-13 4.3E-18 123.6 -2.6 161 964-1153 28-190 (264)
26 TIGR02928 orc1/cdc6 family rep 99.3 2.1E-10 4.6E-15 130.8 19.6 303 87-403 13-351 (365)
27 TIGR03015 pepcterm_ATPase puta 99.2 1.6E-09 3.4E-14 117.8 22.4 182 116-302 43-242 (269)
28 TIGR00635 ruvB Holliday juncti 99.2 5.1E-10 1.1E-14 123.8 17.1 276 89-405 4-292 (305)
29 PF01637 Arch_ATPase: Archaeal 99.2 2.3E-10 4.9E-15 122.1 13.8 195 91-297 1-233 (234)
30 PRK00080 ruvB Holliday junctio 99.2 4.8E-10 1E-14 124.4 16.2 279 87-405 23-313 (328)
31 KOG4658 Apoptotic ATPase [Sign 99.1 5.1E-11 1.1E-15 145.3 7.2 106 498-604 543-651 (889)
32 PTZ00112 origin recognition co 99.1 7.8E-09 1.7E-13 119.6 20.6 306 87-402 753-1086(1164)
33 COG3899 Predicted ATPase [Gene 99.0 4.9E-09 1.1E-13 128.9 19.3 310 90-422 1-385 (849)
34 cd00116 LRR_RI Leucine-rich re 99.0 8E-11 1.7E-15 132.3 1.8 40 496-536 19-63 (319)
35 cd00116 LRR_RI Leucine-rich re 98.9 4.1E-11 9E-16 134.6 -4.5 36 1133-1169 276-318 (319)
36 PF05729 NACHT: NACHT domain 98.9 4.7E-09 1E-13 104.9 10.7 143 117-265 1-163 (166)
37 PTZ00202 tuzin; Provisional 98.9 1.6E-06 3.4E-11 93.4 26.5 170 82-265 255-434 (550)
38 PF14580 LRR_9: Leucine-rich r 98.7 9.8E-09 2.1E-13 99.5 4.1 82 497-582 16-99 (175)
39 COG2256 MGS1 ATPase related to 98.7 5.8E-07 1.2E-11 95.0 16.2 204 114-343 46-268 (436)
40 PRK06893 DNA replication initi 98.7 2.3E-07 5E-12 96.7 13.1 156 116-302 39-207 (229)
41 COG4886 Leucine-rich repeat (L 98.6 2.6E-08 5.6E-13 115.1 5.8 182 496-743 112-294 (394)
42 COG1474 CDC6 Cdc6-related prot 98.6 2.9E-06 6.3E-11 93.7 21.2 253 88-352 16-291 (366)
43 KOG3207 Beta-tubulin folding c 98.6 4.7E-09 1E-13 110.8 -0.7 110 989-1098 168-280 (505)
44 PF05496 RuvB_N: Holliday junc 98.6 1E-06 2.3E-11 86.9 15.2 184 87-303 22-226 (233)
45 PF14580 LRR_9: Leucine-rich r 98.6 2.8E-08 6.1E-13 96.4 4.0 106 498-607 40-152 (175)
46 KOG0532 Leucine-rich repeat (L 98.6 3.7E-09 8E-14 115.0 -2.8 174 495-736 93-270 (722)
47 PF13401 AAA_22: AAA domain; P 98.6 1.4E-07 3E-12 89.7 8.2 118 115-234 3-125 (131)
48 PRK13342 recombination factor 98.6 2.4E-06 5.1E-11 98.0 19.8 178 88-299 11-197 (413)
49 COG3903 Predicted ATPase [Gene 98.6 2E-07 4.3E-12 99.4 9.8 291 115-424 13-315 (414)
50 PRK14960 DNA polymerase III su 98.6 1.8E-06 4E-11 99.3 18.1 194 88-297 14-219 (702)
51 KOG1259 Nischarin, modulator o 98.6 8.4E-09 1.8E-13 102.8 -1.2 85 496-582 210-318 (490)
52 PRK04195 replication factor C 98.5 4.4E-06 9.5E-11 97.9 21.0 248 88-375 13-271 (482)
53 PRK07003 DNA polymerase III su 98.5 2E-06 4.3E-11 100.1 17.5 196 88-299 15-222 (830)
54 KOG3207 Beta-tubulin folding c 98.5 1.3E-08 2.8E-13 107.5 -0.2 203 968-1173 120-341 (505)
55 PLN03150 hypothetical protein; 98.5 1.1E-07 2.3E-12 114.7 7.3 105 971-1075 420-526 (623)
56 PRK14961 DNA polymerase III su 98.5 3.1E-06 6.8E-11 95.0 18.0 190 88-294 15-216 (363)
57 TIGR03420 DnaA_homol_Hda DnaA 98.5 9E-07 1.9E-11 93.3 12.9 176 89-301 15-204 (226)
58 PF13191 AAA_16: AAA ATPase do 98.5 1.9E-07 4.2E-12 95.0 7.4 47 90-139 1-47 (185)
59 PRK05564 DNA polymerase III su 98.5 3.3E-06 7.2E-11 93.2 17.1 178 89-296 4-188 (313)
60 KOG1259 Nischarin, modulator o 98.5 2.3E-08 5E-13 99.8 -0.1 126 1037-1170 280-411 (490)
61 PRK14949 DNA polymerase III su 98.5 3.2E-06 6.9E-11 100.6 17.3 195 88-298 15-221 (944)
62 PLN03150 hypothetical protein; 98.5 1.6E-07 3.5E-12 113.1 6.8 105 994-1098 419-524 (623)
63 PRK12402 replication factor C 98.5 4.2E-06 9.2E-11 94.5 17.8 196 88-296 14-224 (337)
64 KOG0532 Leucine-rich repeat (L 98.4 6.1E-09 1.3E-13 113.4 -5.8 99 491-593 112-210 (722)
65 PRK14957 DNA polymerase III su 98.4 8.5E-06 1.8E-10 94.3 18.9 186 88-300 15-223 (546)
66 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.8E-12 73.7 4.3 60 993-1052 1-60 (61)
67 PRK14963 DNA polymerase III su 98.4 7.8E-07 1.7E-11 102.8 10.3 195 88-295 13-214 (504)
68 PRK12323 DNA polymerase III su 98.4 4.8E-06 1E-10 95.7 15.5 195 88-295 15-222 (700)
69 PRK14956 DNA polymerase III su 98.4 2.9E-06 6.3E-11 95.1 13.4 191 87-293 16-217 (484)
70 PRK08691 DNA polymerase III su 98.4 3.4E-06 7.4E-11 98.2 14.4 192 88-295 15-217 (709)
71 PRK00440 rfc replication facto 98.4 7.8E-06 1.7E-10 91.6 17.2 181 88-295 16-200 (319)
72 COG4886 Leucine-rich repeat (L 98.4 3.3E-07 7E-12 106.0 5.7 170 993-1169 116-288 (394)
73 PLN03025 replication factor C 98.4 4.1E-06 8.8E-11 92.7 14.1 180 88-292 12-194 (319)
74 PRK09112 DNA polymerase III su 98.4 6.7E-06 1.5E-10 90.6 15.3 199 85-298 19-240 (351)
75 PRK06645 DNA polymerase III su 98.4 8.7E-06 1.9E-10 93.6 16.4 193 88-293 20-224 (507)
76 PRK07471 DNA polymerase III su 98.4 1.5E-05 3.2E-10 88.4 17.7 198 87-298 17-238 (365)
77 PRK08727 hypothetical protein; 98.3 8.2E-06 1.8E-10 85.3 14.7 148 117-295 42-201 (233)
78 PRK05896 DNA polymerase III su 98.3 1.6E-05 3.4E-10 91.9 17.9 198 87-300 14-223 (605)
79 cd00009 AAA The AAA+ (ATPases 98.3 3.5E-06 7.6E-11 82.4 11.2 125 92-236 1-131 (151)
80 PRK08903 DnaA regulatory inact 98.3 6.9E-06 1.5E-10 86.3 13.5 153 115-302 41-203 (227)
81 PRK07994 DNA polymerase III su 98.3 1.8E-05 3.8E-10 93.1 18.0 196 87-298 14-221 (647)
82 KOG2028 ATPase related to the 98.3 1.2E-05 2.7E-10 83.1 14.1 157 114-292 160-330 (554)
83 TIGR02397 dnaX_nterm DNA polym 98.3 3.2E-05 6.9E-10 88.0 19.5 183 88-298 13-218 (355)
84 PRK14958 DNA polymerase III su 98.3 2.1E-05 4.6E-10 91.4 18.0 195 88-298 15-221 (509)
85 PF14516 AAA_35: AAA-like doma 98.3 0.00016 3.5E-09 80.0 24.1 203 86-305 8-246 (331)
86 KOG4341 F-box protein containi 98.3 5.1E-08 1.1E-12 102.6 -3.2 228 860-1098 188-435 (483)
87 PF13173 AAA_14: AAA domain 98.3 1.9E-06 4E-11 80.8 7.6 118 117-256 3-126 (128)
88 PRK07940 DNA polymerase III su 98.3 1.9E-05 4E-10 88.4 16.5 190 89-296 5-211 (394)
89 PRK14962 DNA polymerase III su 98.3 1.2E-05 2.6E-10 92.2 15.3 197 88-301 13-222 (472)
90 COG2255 RuvB Holliday junction 98.3 1.2E-05 2.7E-10 80.9 13.0 266 88-405 25-314 (332)
91 PRK14951 DNA polymerase III su 98.3 3.7E-05 8E-10 90.3 18.9 195 88-295 15-222 (618)
92 PRK15386 type III secretion pr 98.2 3.4E-06 7.5E-11 92.1 9.5 58 1111-1172 156-214 (426)
93 PRK14964 DNA polymerase III su 98.2 3.6E-05 7.8E-10 87.8 17.7 178 87-294 11-213 (491)
94 TIGR00678 holB DNA polymerase 98.2 2.9E-05 6.2E-10 78.8 15.4 90 194-293 95-186 (188)
95 KOG2227 Pre-initiation complex 98.2 3.7E-05 8.1E-10 83.1 16.3 179 86-266 147-339 (529)
96 PF13855 LRR_8: Leucine rich r 98.2 1.7E-06 3.6E-11 68.6 4.8 61 969-1029 1-61 (61)
97 PRK14969 DNA polymerase III su 98.2 3.8E-05 8.3E-10 90.0 17.6 196 88-299 15-222 (527)
98 KOG4341 F-box protein containi 98.2 5.7E-08 1.2E-12 102.2 -5.2 33 705-737 139-175 (483)
99 PF05621 TniB: Bacterial TniB 98.2 5.4E-05 1.2E-09 79.0 16.2 204 89-296 34-259 (302)
100 PRK09087 hypothetical protein; 98.2 3.3E-05 7.2E-10 79.8 14.7 143 116-300 44-197 (226)
101 KOG0989 Replication factor C, 98.2 5.9E-06 1.3E-10 84.1 8.7 184 87-291 34-223 (346)
102 PRK08084 DNA replication initi 98.2 2.8E-05 6.1E-10 81.4 14.4 154 116-300 45-211 (235)
103 KOG2120 SCF ubiquitin ligase, 98.2 4.9E-08 1.1E-12 97.6 -5.9 158 525-738 186-350 (419)
104 PRK14955 DNA polymerase III su 98.2 3.2E-05 6.9E-10 88.0 15.9 200 88-297 15-228 (397)
105 PRK13341 recombination factor 98.2 1.1E-05 2.3E-10 97.2 12.4 173 88-293 27-212 (725)
106 PRK14959 DNA polymerase III su 98.2 0.0001 2.2E-09 86.0 19.4 198 88-302 15-225 (624)
107 PRK09111 DNA polymerase III su 98.1 4.5E-05 9.8E-10 89.9 16.7 197 87-296 22-231 (598)
108 TIGR02903 spore_lon_C ATP-depe 98.1 2.4E-05 5.2E-10 93.5 14.7 202 88-299 153-396 (615)
109 PRK05642 DNA replication initi 98.1 3.5E-05 7.5E-10 80.6 13.8 156 116-302 45-212 (234)
110 TIGR01242 26Sp45 26S proteasom 98.1 2.1E-05 4.6E-10 88.8 12.8 181 87-292 120-328 (364)
111 PRK07133 DNA polymerase III su 98.1 7.4E-05 1.6E-09 88.5 17.0 194 88-299 17-221 (725)
112 PRK14970 DNA polymerase III su 98.1 0.00011 2.4E-09 83.4 17.3 177 88-293 16-204 (367)
113 PRK14952 DNA polymerase III su 98.1 0.00014 3E-09 85.3 18.2 198 88-301 12-223 (584)
114 PF00308 Bac_DnaA: Bacterial d 98.0 9E-05 2E-09 76.4 14.7 163 115-299 33-209 (219)
115 PRK14950 DNA polymerase III su 98.0 5.9E-05 1.3E-09 90.2 15.3 195 88-298 15-221 (585)
116 PRK14954 DNA polymerase III su 98.0 4.1E-05 8.8E-10 90.4 13.6 201 88-297 15-228 (620)
117 TIGR03345 VI_ClpV1 type VI sec 98.0 3E-05 6.4E-10 96.1 13.1 182 88-292 186-390 (852)
118 PRK14953 DNA polymerase III su 98.0 0.00023 4.9E-09 82.4 19.3 189 88-296 15-218 (486)
119 cd01128 rho_factor Transcripti 98.0 1.1E-05 2.3E-10 84.1 7.2 91 115-206 15-114 (249)
120 PRK07764 DNA polymerase III su 98.0 0.00011 2.3E-09 89.9 16.6 190 88-294 14-217 (824)
121 PRK06305 DNA polymerase III su 98.0 0.00014 3.1E-09 83.6 16.8 183 88-298 16-223 (451)
122 PRK08451 DNA polymerase III su 98.0 0.00017 3.7E-09 83.1 17.4 193 88-296 13-216 (535)
123 KOG0531 Protein phosphatase 1, 98.0 1E-06 2.2E-11 101.7 -0.7 100 496-600 91-191 (414)
124 PRK15386 type III secretion pr 98.0 2.4E-05 5.3E-10 85.6 9.2 138 991-1169 50-188 (426)
125 PRK14087 dnaA chromosomal repl 98.0 0.00015 3.3E-09 83.3 15.8 170 116-301 141-322 (450)
126 TIGR02881 spore_V_K stage V sp 97.9 0.00014 3.1E-09 77.9 14.4 161 90-266 7-192 (261)
127 KOG0531 Protein phosphatase 1, 97.9 1.2E-06 2.5E-11 101.2 -1.8 98 498-600 70-167 (414)
128 TIGR02639 ClpA ATP-dependent C 97.9 8.2E-05 1.8E-09 91.8 14.1 157 89-265 182-358 (731)
129 COG3267 ExeA Type II secretory 97.9 0.00039 8.5E-09 69.7 15.9 180 115-301 50-248 (269)
130 CHL00181 cbbX CbbX; Provisiona 97.9 0.0004 8.7E-09 74.7 17.3 162 90-267 24-211 (287)
131 PRK09376 rho transcription ter 97.9 2.6E-05 5.7E-10 84.3 8.1 91 115-206 168-267 (416)
132 PRK14971 DNA polymerase III su 97.9 0.0002 4.2E-09 85.4 16.3 191 88-293 16-217 (614)
133 KOG1909 Ran GTPase-activating 97.9 1.4E-06 3E-11 90.0 -1.5 90 492-582 22-131 (382)
134 PRK06647 DNA polymerase III su 97.9 0.00054 1.2E-08 80.7 19.3 192 88-295 15-217 (563)
135 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 58.1 3.2 33 525-557 2-34 (44)
136 PHA02544 44 clamp loader, smal 97.9 8E-05 1.7E-09 82.9 12.0 147 88-263 20-171 (316)
137 PRK03992 proteasome-activating 97.9 9.8E-05 2.1E-09 83.6 12.4 180 88-292 130-337 (389)
138 PRK14948 DNA polymerase III su 97.9 0.0004 8.7E-09 82.7 17.8 195 88-296 15-220 (620)
139 PF12799 LRR_4: Leucine Rich r 97.9 1.1E-05 2.3E-10 58.1 2.8 41 500-541 1-41 (44)
140 KOG2120 SCF ubiquitin ligase, 97.9 1E-07 2.2E-12 95.5 -10.4 178 969-1168 185-373 (419)
141 PRK06620 hypothetical protein; 97.9 0.00039 8.4E-09 71.3 15.1 136 117-296 45-187 (214)
142 KOG1909 Ran GTPase-activating 97.8 2.5E-06 5.3E-11 88.3 -1.4 89 492-582 50-168 (382)
143 PF05673 DUF815: Protein of un 97.8 0.00036 7.7E-09 70.5 13.8 127 85-238 23-154 (249)
144 CHL00095 clpC Clp protease ATP 97.8 8.3E-05 1.8E-09 92.9 11.7 156 89-264 179-353 (821)
145 PRK05563 DNA polymerase III su 97.8 0.00054 1.2E-08 81.1 17.7 191 87-294 14-216 (559)
146 PRK11331 5-methylcytosine-spec 97.8 8.9E-05 1.9E-09 82.3 10.0 111 89-211 175-288 (459)
147 KOG1859 Leucine-rich repeat pr 97.8 8E-07 1.7E-11 99.9 -5.9 193 969-1172 84-293 (1096)
148 TIGR02880 cbbX_cfxQ probable R 97.8 0.00059 1.3E-08 73.5 16.1 161 90-266 23-209 (284)
149 PRK07399 DNA polymerase III su 97.8 0.00067 1.5E-08 73.9 16.5 195 89-297 4-220 (314)
150 PRK14965 DNA polymerase III su 97.8 0.00072 1.6E-08 80.5 17.8 197 87-299 14-222 (576)
151 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00027 5.9E-09 88.6 15.0 157 89-265 173-349 (852)
152 PRK10865 protein disaggregatio 97.7 0.00025 5.4E-09 88.5 14.1 157 88-265 177-354 (857)
153 TIGR00767 rho transcription te 97.7 0.00013 2.8E-09 79.6 9.8 91 115-206 167-266 (415)
154 PRK11034 clpA ATP-dependent Cl 97.7 0.00022 4.8E-09 86.5 12.8 157 89-265 186-362 (758)
155 KOG2543 Origin recognition com 97.7 0.0012 2.6E-08 69.9 15.9 167 88-264 5-192 (438)
156 PRK05707 DNA polymerase III su 97.7 0.00067 1.4E-08 74.3 14.8 168 115-298 21-203 (328)
157 PRK14088 dnaA chromosomal repl 97.7 0.00082 1.8E-08 77.3 16.2 160 116-298 130-305 (440)
158 TIGR00362 DnaA chromosomal rep 97.7 0.00084 1.8E-08 77.3 15.8 161 116-298 136-310 (405)
159 PTZ00361 26 proteosome regulat 97.6 0.00023 5E-09 80.4 9.3 158 89-266 183-368 (438)
160 TIGR00602 rad24 checkpoint pro 97.5 0.0005 1.1E-08 81.2 11.9 52 87-139 82-133 (637)
161 PRK12422 chromosomal replicati 97.5 0.0028 6.1E-08 72.7 17.5 155 116-292 141-307 (445)
162 PTZ00494 tuzin-like protein; P 97.5 0.033 7.1E-07 60.7 23.6 171 82-265 364-544 (664)
163 TIGR03689 pup_AAA proteasome A 97.5 0.0014 3E-08 75.4 14.2 167 89-265 182-378 (512)
164 PRK00149 dnaA chromosomal repl 97.5 0.0013 2.8E-08 76.7 14.2 160 115-298 147-322 (450)
165 COG0593 DnaA ATPase involved i 97.5 0.0013 2.9E-08 72.5 13.0 136 115-269 112-261 (408)
166 KOG4579 Leucine-rich repeat (L 97.4 4.4E-05 9.6E-10 67.8 1.1 94 494-590 47-141 (177)
167 PRK08769 DNA polymerase III su 97.4 0.0044 9.6E-08 67.2 16.6 187 96-299 11-209 (319)
168 PF00004 AAA: ATPase family as 97.4 0.00017 3.6E-09 68.5 5.0 21 119-139 1-21 (132)
169 PRK06871 DNA polymerase III su 97.4 0.0055 1.2E-07 66.6 17.0 174 97-293 10-198 (325)
170 KOG1514 Origin recognition com 97.4 0.0046 1E-07 70.9 16.6 204 88-298 395-621 (767)
171 PRK07952 DNA replication prote 97.4 0.0015 3.3E-08 67.8 12.0 103 116-234 99-204 (244)
172 PRK08058 DNA polymerase III su 97.4 0.0032 6.9E-08 69.7 15.3 163 90-264 6-181 (329)
173 smart00382 AAA ATPases associa 97.4 0.00079 1.7E-08 65.1 9.6 88 117-208 3-91 (148)
174 CHL00176 ftsH cell division pr 97.4 0.0016 3.5E-08 77.7 13.7 180 87-291 181-387 (638)
175 TIGR01241 FtsH_fam ATP-depende 97.4 0.0029 6.3E-08 74.7 15.5 187 87-298 53-267 (495)
176 PRK14086 dnaA chromosomal repl 97.4 0.0027 5.9E-08 73.9 14.5 159 117-297 315-487 (617)
177 COG1222 RPT1 ATP-dependent 26S 97.3 0.0074 1.6E-07 63.7 15.9 178 89-292 151-357 (406)
178 KOG4579 Leucine-rich repeat (L 97.3 1.5E-05 3.2E-10 70.7 -3.1 101 499-602 26-130 (177)
179 COG5238 RNA1 Ran GTPase-activa 97.3 2.8E-05 6.1E-10 77.3 -2.1 256 497-800 27-316 (388)
180 COG0466 Lon ATP-dependent Lon 97.3 0.002 4.4E-08 74.1 12.2 165 88-265 322-508 (782)
181 PTZ00454 26S protease regulato 97.3 0.0025 5.4E-08 71.8 13.0 180 88-292 144-351 (398)
182 PRK06090 DNA polymerase III su 97.3 0.0088 1.9E-07 64.8 16.6 177 96-298 10-201 (319)
183 KOG2982 Uncharacterized conser 97.3 0.00011 2.4E-09 74.2 1.9 85 969-1053 71-158 (418)
184 PF13177 DNA_pol3_delta2: DNA 97.3 0.003 6.5E-08 61.7 11.7 120 93-236 1-143 (162)
185 TIGR02640 gas_vesic_GvpN gas v 97.3 0.008 1.7E-07 64.3 15.8 21 118-138 23-43 (262)
186 KOG2982 Uncharacterized conser 97.2 0.0005 1.1E-08 69.7 5.8 83 496-582 67-157 (418)
187 COG0542 clpA ATP-binding subun 97.2 0.0012 2.7E-08 78.3 9.9 139 88-234 490-643 (786)
188 PF10443 RNA12: RNA12 protein; 97.2 0.0063 1.4E-07 66.9 14.5 200 94-309 1-289 (431)
189 PRK07993 DNA polymerase III su 97.2 0.01 2.2E-07 65.3 16.3 177 96-295 9-201 (334)
190 PRK10536 hypothetical protein; 97.2 0.0031 6.8E-08 64.8 11.2 136 89-236 55-214 (262)
191 TIGR02639 ClpA ATP-dependent C 97.2 0.0031 6.7E-08 78.1 13.4 134 88-234 453-603 (731)
192 PRK08116 hypothetical protein; 97.1 0.0011 2.5E-08 70.5 7.9 103 117-234 115-220 (268)
193 KOG0991 Replication factor C, 97.1 0.0099 2.2E-07 58.3 12.8 46 87-138 25-70 (333)
194 KOG1859 Leucine-rich repeat pr 97.1 8.2E-05 1.8E-09 84.3 -1.3 87 491-582 178-265 (1096)
195 KOG0741 AAA+-type ATPase [Post 97.1 0.0079 1.7E-07 66.3 13.4 130 114-264 536-685 (744)
196 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0021 4.5E-08 80.1 10.4 138 88-234 565-718 (852)
197 COG1223 Predicted ATPase (AAA+ 97.1 0.0075 1.6E-07 60.2 12.0 178 88-291 120-318 (368)
198 KOG2004 Mitochondrial ATP-depe 97.1 0.0018 3.9E-08 74.0 8.6 107 88-206 410-516 (906)
199 TIGR00763 lon ATP-dependent pr 97.0 0.0048 1E-07 76.9 13.2 165 89-265 320-505 (775)
200 KOG3665 ZYG-1-like serine/thre 97.0 0.00036 7.7E-09 84.0 3.1 80 500-581 122-205 (699)
201 KOG1644 U2-associated snRNP A' 97.0 0.0012 2.6E-08 63.4 5.9 79 1018-1098 43-122 (233)
202 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0033 7.2E-08 79.1 11.7 137 88-234 564-717 (852)
203 PRK10865 protein disaggregatio 97.0 0.0066 1.4E-07 76.0 14.1 139 88-234 567-720 (857)
204 PRK13531 regulatory ATPase Rav 97.0 0.0031 6.7E-08 71.0 9.9 44 88-139 19-62 (498)
205 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0095 2.1E-07 67.0 13.4 181 87-292 188-396 (802)
206 PRK09183 transposase/IS protei 97.0 0.012 2.6E-07 62.5 14.0 23 116-138 102-124 (259)
207 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00074 1.6E-08 73.1 4.7 50 90-139 52-101 (361)
208 PRK10787 DNA-binding ATP-depen 97.0 0.0019 4.1E-08 79.4 8.9 166 88-265 321-506 (784)
209 PRK12377 putative replication 97.0 0.0031 6.7E-08 65.8 9.1 102 116-234 101-205 (248)
210 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0051 1.1E-07 71.0 11.7 181 89-292 228-429 (489)
211 COG1373 Predicted ATPase (AAA+ 97.0 0.011 2.3E-07 67.1 14.1 146 118-297 39-191 (398)
212 COG2812 DnaX DNA polymerase II 96.9 0.0034 7.3E-08 71.6 9.7 188 88-292 15-214 (515)
213 PRK04296 thymidine kinase; Pro 96.9 0.002 4.3E-08 65.0 7.1 113 117-236 3-117 (190)
214 KOG3665 ZYG-1-like serine/thre 96.9 0.00078 1.7E-08 81.1 4.6 110 466-583 145-262 (699)
215 PRK08939 primosomal protein Dn 96.9 0.0024 5.3E-08 69.2 7.9 122 93-234 135-260 (306)
216 CHL00095 clpC Clp protease ATP 96.9 0.0045 9.8E-08 77.7 11.3 137 88-234 508-661 (821)
217 PF04665 Pox_A32: Poxvirus A32 96.9 0.0017 3.6E-08 66.5 5.9 35 118-154 15-49 (241)
218 TIGR01650 PD_CobS cobaltochela 96.9 0.027 5.9E-07 60.6 15.1 238 89-355 45-318 (327)
219 COG0470 HolB ATPase involved i 96.8 0.0068 1.5E-07 68.1 11.2 146 90-255 2-171 (325)
220 PRK06964 DNA polymerase III su 96.8 0.007 1.5E-07 66.3 10.7 93 194-298 131-225 (342)
221 COG2607 Predicted ATPase (AAA+ 96.8 0.0059 1.3E-07 60.5 8.9 124 84-234 55-182 (287)
222 PRK08181 transposase; Validate 96.8 0.0017 3.8E-08 68.5 5.9 101 117-235 107-209 (269)
223 KOG2228 Origin recognition com 96.8 0.012 2.5E-07 61.6 11.4 172 89-265 24-219 (408)
224 KOG0744 AAA+-type ATPase [Post 96.8 0.015 3.3E-07 60.2 11.9 81 116-206 177-261 (423)
225 KOG1644 U2-associated snRNP A' 96.8 0.002 4.4E-08 61.9 5.2 102 995-1098 44-149 (233)
226 PF01695 IstB_IS21: IstB-like 96.7 0.0019 4E-08 64.1 5.1 102 115-234 46-149 (178)
227 PRK08118 topology modulation p 96.7 0.0028 6.1E-08 62.2 6.1 34 118-151 3-37 (167)
228 PF00158 Sigma54_activat: Sigm 96.7 0.0068 1.5E-07 59.3 8.5 133 91-235 1-144 (168)
229 TIGR01243 CDC48 AAA family ATP 96.7 0.0093 2E-07 74.3 11.7 181 88-293 177-382 (733)
230 PRK06526 transposase; Provisio 96.7 0.0021 4.5E-08 67.7 5.1 24 116-139 98-121 (254)
231 TIGR01243 CDC48 AAA family ATP 96.7 0.019 4E-07 71.6 14.3 179 89-292 453-657 (733)
232 PF14532 Sigma54_activ_2: Sigm 96.6 0.0019 4.2E-08 61.4 4.2 107 92-234 1-109 (138)
233 PLN00020 ribulose bisphosphate 96.6 0.035 7.6E-07 59.9 13.6 26 114-139 146-171 (413)
234 PRK12608 transcription termina 96.6 0.012 2.7E-07 64.2 10.4 102 97-205 119-230 (380)
235 PF02562 PhoH: PhoH-like prote 96.6 0.013 2.9E-07 58.6 9.9 127 94-235 5-156 (205)
236 TIGR02902 spore_lonB ATP-depen 96.6 0.013 2.9E-07 69.2 11.6 44 89-138 65-108 (531)
237 PF07693 KAP_NTPase: KAP famil 96.6 0.058 1.2E-06 60.5 16.4 43 94-139 1-43 (325)
238 TIGR02237 recomb_radB DNA repa 96.6 0.0073 1.6E-07 62.5 8.4 49 114-165 10-58 (209)
239 COG0542 clpA ATP-binding subun 96.6 0.0065 1.4E-07 72.4 8.7 158 88-265 169-346 (786)
240 PF00448 SRP54: SRP54-type pro 96.6 0.0065 1.4E-07 61.2 7.6 88 116-205 1-93 (196)
241 PRK06921 hypothetical protein; 96.5 0.0074 1.6E-07 64.2 8.1 37 116-154 117-154 (266)
242 KOG1969 DNA replication checkp 96.5 0.0076 1.6E-07 69.4 8.4 84 114-215 324-407 (877)
243 PF07728 AAA_5: AAA domain (dy 96.5 0.0013 2.8E-08 62.9 2.0 85 119-216 2-86 (139)
244 PRK11034 clpA ATP-dependent Cl 96.5 0.0086 1.9E-07 73.1 9.4 119 89-219 458-581 (758)
245 PRK08699 DNA polymerase III su 96.5 0.0063 1.4E-07 66.7 7.2 71 194-264 112-184 (325)
246 PRK00771 signal recognition pa 96.5 0.12 2.6E-06 58.9 17.6 88 114-204 93-184 (437)
247 KOG2035 Replication factor C, 96.5 0.014 3.1E-07 59.1 8.9 207 90-318 14-258 (351)
248 PRK05541 adenylylsulfate kinas 96.4 0.0049 1.1E-07 61.7 5.9 36 115-152 6-41 (176)
249 KOG1051 Chaperone HSP104 and r 96.4 0.014 3E-07 70.7 10.5 120 89-219 562-684 (898)
250 PRK09361 radB DNA repair and r 96.4 0.0096 2.1E-07 62.4 8.2 46 114-162 21-66 (225)
251 cd00544 CobU Adenosylcobinamid 96.4 0.0058 1.2E-07 59.8 5.8 79 119-204 2-82 (169)
252 PRK07261 topology modulation p 96.4 0.0074 1.6E-07 59.7 6.5 66 118-206 2-68 (171)
253 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.015 3.1E-07 55.7 7.8 116 117-235 3-138 (159)
254 cd01393 recA_like RecA is a b 96.3 0.018 4E-07 60.4 9.5 91 114-205 17-124 (226)
255 PRK11889 flhF flagellar biosyn 96.3 0.049 1.1E-06 59.7 12.5 90 115-206 240-331 (436)
256 KOG0734 AAA+-type ATPase conta 96.3 0.014 3E-07 64.5 8.4 52 88-139 303-360 (752)
257 TIGR03499 FlhF flagellar biosy 96.3 0.014 3E-07 62.9 8.6 87 115-204 193-281 (282)
258 KOG0730 AAA+-type ATPase [Post 96.2 0.015 3.2E-07 66.6 8.5 178 90-292 435-637 (693)
259 PRK06696 uridine kinase; Valid 96.2 0.0061 1.3E-07 63.5 5.3 44 93-139 2-45 (223)
260 PRK15455 PrkA family serine pr 96.2 0.0036 7.7E-08 71.4 3.7 51 89-139 76-126 (644)
261 PF13207 AAA_17: AAA domain; P 96.2 0.0034 7.3E-08 58.3 3.0 21 118-138 1-21 (121)
262 COG0464 SpoVK ATPases of the A 96.1 0.045 9.8E-07 65.0 12.8 133 114-266 274-424 (494)
263 cd01394 radB RadB. The archaea 96.1 0.017 3.7E-07 60.2 8.1 43 114-158 17-59 (218)
264 PF13604 AAA_30: AAA domain; P 96.1 0.015 3.3E-07 58.9 7.4 104 117-235 19-131 (196)
265 cd00983 recA RecA is a bacter 96.0 0.01 2.2E-07 64.1 6.0 85 114-205 53-143 (325)
266 PRK06835 DNA replication prote 96.0 0.0058 1.3E-07 66.8 4.2 102 117-234 184-288 (329)
267 COG1484 DnaC DNA replication p 96.0 0.016 3.6E-07 61.0 7.4 82 115-213 104-185 (254)
268 TIGR01817 nifA Nif-specific re 96.0 0.045 9.7E-07 65.6 11.9 49 87-139 194-242 (534)
269 KOG0733 Nuclear AAA ATPase (VC 96.0 0.075 1.6E-06 60.2 12.3 154 93-266 515-693 (802)
270 PRK04132 replication factor C 96.0 0.12 2.5E-06 63.6 15.1 157 122-298 570-732 (846)
271 KOG0728 26S proteasome regulat 96.0 0.17 3.6E-06 50.4 13.2 154 91-265 148-331 (404)
272 cd01123 Rad51_DMC1_radA Rad51_ 96.0 0.026 5.6E-07 59.7 8.7 50 114-163 17-70 (235)
273 COG1618 Predicted nucleotide k 95.9 0.0064 1.4E-07 56.3 3.3 25 116-140 5-29 (179)
274 KOG0731 AAA+-type ATPase conta 95.9 0.1 2.2E-06 62.1 13.9 185 86-295 308-521 (774)
275 PF03215 Rad17: Rad17 cell cyc 95.9 0.044 9.4E-07 63.9 10.9 60 88-152 18-77 (519)
276 PHA02244 ATPase-like protein 95.9 0.028 6.1E-07 61.1 8.6 22 118-139 121-142 (383)
277 KOG2123 Uncharacterized conser 95.9 0.00057 1.2E-08 68.6 -3.8 103 498-604 17-126 (388)
278 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.6E-08 37.2 1.0 18 526-543 2-19 (22)
279 PRK08233 hypothetical protein; 95.9 0.023 5.1E-07 57.3 7.6 24 116-139 3-26 (182)
280 KOG2739 Leucine-rich acidic nu 95.9 0.0029 6.2E-08 63.9 0.8 38 992-1029 64-103 (260)
281 KOG2739 Leucine-rich acidic nu 95.9 0.0034 7.4E-08 63.4 1.3 104 499-606 42-154 (260)
282 PRK12724 flagellar biosynthesi 95.8 0.036 7.7E-07 61.7 9.2 24 115-138 222-245 (432)
283 PRK12727 flagellar biosynthesi 95.8 0.021 4.5E-07 65.2 7.5 89 115-205 349-438 (559)
284 PRK05703 flhF flagellar biosyn 95.8 0.059 1.3E-06 61.5 11.3 87 116-204 221-308 (424)
285 PRK11608 pspF phage shock prot 95.8 0.027 5.8E-07 62.3 8.4 46 89-138 6-51 (326)
286 TIGR02012 tigrfam_recA protein 95.8 0.015 3.2E-07 62.9 6.1 85 114-205 53-143 (321)
287 COG2884 FtsE Predicted ATPase 95.8 0.084 1.8E-06 50.7 10.1 59 182-242 142-204 (223)
288 COG5238 RNA1 Ran GTPase-activa 95.8 0.0023 4.9E-08 64.2 -0.2 199 968-1170 29-284 (388)
289 PHA00729 NTP-binding motif con 95.8 0.015 3.2E-07 59.0 5.6 24 115-138 16-39 (226)
290 KOG0735 AAA+-type ATPase [Post 95.8 0.068 1.5E-06 61.6 11.2 165 115-299 430-617 (952)
291 PF07724 AAA_2: AAA domain (Cd 95.8 0.0057 1.2E-07 60.1 2.6 40 116-157 3-43 (171)
292 KOG0735 AAA+-type ATPase [Post 95.8 0.53 1.1E-05 54.7 18.1 179 89-292 667-870 (952)
293 cd01131 PilT Pilus retraction 95.7 0.015 3.3E-07 59.1 5.3 109 117-236 2-110 (198)
294 TIGR02974 phageshock_pspF psp 95.6 0.028 6.1E-07 62.0 7.6 45 91-139 1-45 (329)
295 PRK06067 flagellar accessory p 95.6 0.032 6.8E-07 58.9 7.6 87 114-205 23-130 (234)
296 PRK07132 DNA polymerase III su 95.6 0.6 1.3E-05 50.4 17.2 153 116-298 18-185 (299)
297 PF10236 DAP3: Mitochondrial r 95.6 0.29 6.4E-06 53.5 15.0 49 246-295 258-306 (309)
298 PRK14722 flhF flagellar biosyn 95.6 0.039 8.4E-07 61.0 8.2 90 115-206 136-226 (374)
299 PRK14974 cell division protein 95.6 0.079 1.7E-06 58.1 10.5 90 115-207 139-234 (336)
300 cd01120 RecA-like_NTPases RecA 95.6 0.048 1E-06 53.8 8.4 39 118-158 1-39 (165)
301 PRK15429 formate hydrogenlyase 95.5 0.057 1.2E-06 66.8 10.5 136 88-235 375-521 (686)
302 PRK09354 recA recombinase A; P 95.5 0.025 5.5E-07 61.6 6.4 85 114-205 58-148 (349)
303 TIGR01425 SRP54_euk signal rec 95.5 0.36 7.8E-06 54.5 15.6 26 114-139 98-123 (429)
304 PRK12726 flagellar biosynthesi 95.5 0.064 1.4E-06 58.6 9.2 91 114-206 204-296 (407)
305 TIGR02238 recomb_DMC1 meiotic 95.5 0.042 9.2E-07 59.8 8.0 58 114-172 94-155 (313)
306 PF08423 Rad51: Rad51; InterP 95.4 0.032 7E-07 59.1 6.9 56 115-171 37-96 (256)
307 COG0572 Udk Uridine kinase [Nu 95.4 0.032 7E-07 55.7 6.4 25 114-138 6-30 (218)
308 PRK12723 flagellar biosynthesi 95.4 0.058 1.2E-06 60.3 9.0 89 115-206 173-265 (388)
309 PRK09270 nucleoside triphospha 95.4 0.057 1.2E-06 56.6 8.7 26 113-138 30-55 (229)
310 PRK10733 hflB ATP-dependent me 95.4 0.055 1.2E-06 65.8 9.6 159 88-266 151-336 (644)
311 cd01122 GP4d_helicase GP4d_hel 95.4 0.11 2.4E-06 56.3 11.2 53 115-170 29-81 (271)
312 PRK05800 cobU adenosylcobinami 95.4 0.016 3.5E-07 56.8 4.1 80 118-204 3-85 (170)
313 PRK07667 uridine kinase; Provi 95.4 0.021 4.6E-07 57.8 5.1 38 98-139 3-40 (193)
314 PRK05439 pantothenate kinase; 95.4 0.082 1.8E-06 57.0 9.6 26 113-138 83-108 (311)
315 PRK10867 signal recognition pa 95.3 0.051 1.1E-06 61.7 8.3 25 114-138 98-122 (433)
316 TIGR00064 ftsY signal recognit 95.3 0.062 1.3E-06 57.4 8.6 89 114-205 70-164 (272)
317 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.022 4.7E-07 61.2 5.0 51 88-138 60-110 (358)
318 TIGR00959 ffh signal recogniti 95.3 0.055 1.2E-06 61.4 8.5 25 115-139 98-122 (428)
319 COG0468 RecA RecA/RadA recombi 95.3 0.076 1.6E-06 56.0 8.9 90 113-204 57-150 (279)
320 KOG0727 26S proteasome regulat 95.3 0.13 2.8E-06 51.2 9.7 51 89-139 155-212 (408)
321 cd03228 ABCC_MRP_Like The MRP 95.2 0.11 2.5E-06 51.4 9.7 24 116-139 28-51 (171)
322 cd03238 ABC_UvrA The excision 95.2 0.13 2.7E-06 50.9 9.8 114 116-239 21-153 (176)
323 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.14 3E-06 49.0 9.9 103 116-238 26-130 (144)
324 cd03214 ABC_Iron-Siderophores_ 95.2 0.16 3.4E-06 50.9 10.7 120 116-238 25-161 (180)
325 KOG0729 26S proteasome regulat 95.2 0.16 3.4E-06 51.1 10.1 50 89-138 177-233 (435)
326 KOG0736 Peroxisome assembly fa 95.2 0.55 1.2E-05 55.2 15.7 151 89-259 672-850 (953)
327 cd01133 F1-ATPase_beta F1 ATP 95.2 0.045 9.8E-07 57.4 6.8 88 115-204 68-172 (274)
328 PRK05022 anaerobic nitric oxid 95.1 0.075 1.6E-06 63.1 9.4 49 87-139 185-233 (509)
329 COG1136 SalX ABC-type antimicr 95.1 0.18 4E-06 51.2 10.7 59 183-242 148-210 (226)
330 TIGR00708 cobA cob(I)alamin ad 95.1 0.11 2.4E-06 50.3 8.7 117 117-235 6-140 (173)
331 KOG0652 26S proteasome regulat 95.1 0.73 1.6E-05 46.4 14.3 50 89-138 171-227 (424)
332 COG1121 ZnuC ABC-type Mn/Zn tr 95.1 0.15 3.2E-06 52.6 10.0 120 117-238 31-202 (254)
333 PF03308 ArgK: ArgK protein; 95.0 0.023 5.1E-07 58.0 4.1 64 97-164 14-77 (266)
334 cd03115 SRP The signal recogni 95.0 0.089 1.9E-06 52.4 8.3 21 118-138 2-22 (173)
335 PRK13695 putative NTPase; Prov 95.0 0.035 7.6E-07 55.3 5.4 22 118-139 2-23 (174)
336 PF01583 APS_kinase: Adenylyls 95.0 0.025 5.5E-07 53.8 4.0 24 116-139 2-25 (156)
337 PF03969 AFG1_ATPase: AFG1-lik 95.0 0.031 6.7E-07 62.0 5.3 80 114-211 60-143 (362)
338 cd03247 ABCC_cytochrome_bd The 95.0 0.17 3.6E-06 50.7 10.1 24 116-139 28-51 (178)
339 cd01129 PulE-GspE PulE/GspE Th 95.0 0.045 9.8E-07 58.3 6.3 82 117-208 81-162 (264)
340 COG4608 AppF ABC-type oligopep 95.0 0.094 2E-06 54.1 8.2 124 115-242 38-177 (268)
341 COG0563 Adk Adenylate kinase a 94.9 0.046 1E-06 54.0 5.8 22 118-139 2-23 (178)
342 PF13238 AAA_18: AAA domain; P 94.9 0.017 3.8E-07 54.3 2.8 21 119-139 1-21 (129)
343 KOG2123 Uncharacterized conser 94.9 0.0045 9.8E-08 62.4 -1.3 81 495-577 36-123 (388)
344 TIGR00390 hslU ATP-dependent p 94.9 0.071 1.5E-06 59.1 7.6 52 88-139 11-70 (441)
345 COG1102 Cmk Cytidylate kinase 94.9 0.061 1.3E-06 50.1 6.0 43 118-173 2-44 (179)
346 TIGR00554 panK_bact pantothena 94.9 0.11 2.5E-06 55.5 9.1 25 114-138 60-84 (290)
347 cd02019 NK Nucleoside/nucleoti 94.9 0.019 4E-07 46.6 2.5 22 118-139 1-22 (69)
348 COG4618 ArpD ABC-type protease 94.9 0.058 1.3E-06 60.0 6.8 22 117-138 363-384 (580)
349 PF07726 AAA_3: ATPase family 94.9 0.016 3.4E-07 52.4 2.0 28 119-148 2-29 (131)
350 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.14 3E-06 54.0 9.5 50 114-167 19-68 (237)
351 PRK00889 adenylylsulfate kinas 94.8 0.069 1.5E-06 53.3 6.8 25 115-139 3-27 (175)
352 cd03216 ABC_Carb_Monos_I This 94.8 0.13 2.8E-06 50.5 8.6 114 117-238 27-145 (163)
353 PF00154 RecA: recA bacterial 94.8 0.048 1E-06 58.8 5.9 85 114-205 51-141 (322)
354 cd03223 ABCD_peroxisomal_ALDP 94.8 0.27 5.9E-06 48.4 10.9 24 116-139 27-50 (166)
355 TIGR00150 HI0065_YjeE ATPase, 94.8 0.044 9.4E-07 50.6 4.8 41 95-139 5-45 (133)
356 PF12775 AAA_7: P-loop contain 94.7 0.024 5.3E-07 60.5 3.5 34 99-139 23-56 (272)
357 TIGR02236 recomb_radA DNA repa 94.7 0.12 2.6E-06 57.2 9.1 57 114-171 93-153 (310)
358 TIGR02239 recomb_RAD51 DNA rep 94.7 0.13 2.9E-06 56.2 9.2 57 114-171 94-154 (316)
359 PLN03187 meiotic recombination 94.7 0.17 3.7E-06 55.6 10.0 58 114-172 124-185 (344)
360 cd03230 ABC_DR_subfamily_A Thi 94.7 0.13 2.7E-06 51.2 8.4 24 116-139 26-49 (173)
361 KOG1947 Leucine rich repeat pr 94.7 0.0016 3.5E-08 78.1 -6.4 40 1136-1175 402-444 (482)
362 COG1875 NYN ribonuclease and A 94.7 0.1 2.3E-06 55.4 7.8 133 92-236 227-389 (436)
363 CHL00206 ycf2 Ycf2; Provisiona 94.7 0.14 3.1E-06 66.6 10.4 25 115-139 1629-1653(2281)
364 cd02025 PanK Pantothenate kina 94.7 0.097 2.1E-06 54.1 7.6 21 118-138 1-21 (220)
365 COG1428 Deoxynucleoside kinase 94.7 0.023 4.9E-07 55.9 2.7 25 116-140 4-28 (216)
366 PF00485 PRK: Phosphoribulokin 94.7 0.023 5E-07 57.8 3.0 22 118-139 1-22 (194)
367 PF13671 AAA_33: AAA domain; P 94.6 0.026 5.7E-07 54.2 3.2 21 118-138 1-21 (143)
368 cd02027 APSK Adenosine 5'-phos 94.6 0.07 1.5E-06 51.4 6.0 21 118-138 1-21 (149)
369 KOG0473 Leucine-rich repeat pr 94.6 0.0029 6.3E-08 62.0 -3.5 86 496-583 38-123 (326)
370 PLN03186 DNA repair protein RA 94.6 0.2 4.4E-06 55.2 10.2 58 114-172 121-182 (342)
371 PTZ00088 adenylate kinase 1; P 94.6 0.036 7.9E-07 57.3 4.2 22 118-139 8-29 (229)
372 TIGR01420 pilT_fam pilus retra 94.6 0.06 1.3E-06 60.1 6.3 86 117-208 123-208 (343)
373 PTZ00301 uridine kinase; Provi 94.6 0.04 8.7E-07 56.1 4.4 23 116-138 3-25 (210)
374 COG1703 ArgK Putative periplas 94.6 0.037 8E-07 57.3 4.1 64 99-166 38-101 (323)
375 PRK04301 radA DNA repair and r 94.5 0.12 2.6E-06 57.1 8.5 57 114-171 100-160 (317)
376 COG4088 Predicted nucleotide k 94.5 0.099 2.1E-06 50.8 6.5 23 117-139 2-24 (261)
377 TIGR03878 thermo_KaiC_2 KaiC d 94.5 0.11 2.4E-06 55.4 7.8 41 114-156 34-74 (259)
378 cd03246 ABCC_Protease_Secretio 94.5 0.17 3.6E-06 50.4 8.6 23 116-138 28-50 (173)
379 KOG3347 Predicted nucleotide k 94.5 0.052 1.1E-06 49.6 4.3 72 116-197 7-78 (176)
380 PF06309 Torsin: Torsin; Inte 94.4 0.063 1.4E-06 48.4 4.8 51 89-139 25-76 (127)
381 PRK05480 uridine/cytidine kina 94.4 0.034 7.4E-07 57.4 3.6 26 114-139 4-29 (209)
382 PF13306 LRR_5: Leucine rich r 94.4 0.13 2.8E-06 48.2 7.3 58 989-1048 8-65 (129)
383 KOG0743 AAA+-type ATPase [Post 94.4 0.63 1.4E-05 51.6 13.2 68 228-302 341-413 (457)
384 PRK05201 hslU ATP-dependent pr 94.4 0.1 2.2E-06 58.0 7.2 52 88-139 14-73 (443)
385 PRK06762 hypothetical protein; 94.4 0.032 6.9E-07 55.2 3.2 23 116-138 2-24 (166)
386 PF08433 KTI12: Chromatin asso 94.4 0.035 7.6E-07 58.9 3.7 23 117-139 2-24 (270)
387 PF13306 LRR_5: Leucine rich r 94.4 0.14 3.1E-06 48.0 7.5 116 970-1092 13-129 (129)
388 cd03282 ABC_MSH4_euk MutS4 hom 94.3 0.1 2.2E-06 53.1 6.8 120 116-242 29-158 (204)
389 COG1419 FlhF Flagellar GTP-bin 94.3 0.17 3.7E-06 55.5 8.7 89 115-205 202-291 (407)
390 PRK06547 hypothetical protein; 94.3 0.039 8.4E-07 54.3 3.6 26 114-139 13-38 (172)
391 PRK05973 replicative DNA helic 94.3 0.1 2.2E-06 53.9 6.7 49 115-167 63-111 (237)
392 TIGR02858 spore_III_AA stage I 94.3 0.24 5.2E-06 52.7 9.6 127 97-238 97-232 (270)
393 PRK05917 DNA polymerase III su 94.3 0.77 1.7E-05 48.9 13.3 132 97-252 5-154 (290)
394 PRK05986 cob(I)alamin adenolsy 94.3 0.15 3.2E-06 50.3 7.4 118 116-235 22-158 (191)
395 PRK10875 recD exonuclease V su 94.2 0.18 4E-06 60.2 9.6 23 116-138 167-189 (615)
396 cd02021 GntK Gluconate kinase 94.2 0.34 7.3E-06 46.9 9.8 22 118-139 1-22 (150)
397 TIGR00235 udk uridine kinase. 94.1 0.043 9.4E-07 56.5 3.7 25 114-138 4-28 (207)
398 PTZ00035 Rad51 protein; Provis 94.1 0.3 6.4E-06 54.1 10.3 57 114-171 116-176 (337)
399 COG0529 CysC Adenylylsulfate k 94.1 0.091 2E-06 49.8 5.2 25 114-138 21-45 (197)
400 PF00560 LRR_1: Leucine Rich R 94.1 0.032 6.9E-07 33.1 1.5 21 548-569 1-21 (22)
401 PF13481 AAA_25: AAA domain; P 94.1 0.22 4.7E-06 50.8 8.7 41 117-157 33-81 (193)
402 PF00910 RNA_helicase: RNA hel 94.0 0.032 6.9E-07 50.1 2.2 21 119-139 1-21 (107)
403 COG2842 Uncharacterized ATPase 94.0 0.37 8E-06 50.3 10.0 121 85-218 68-188 (297)
404 PRK07276 DNA polymerase III su 94.0 1.5 3.3E-05 46.9 15.1 69 194-263 103-173 (290)
405 COG0541 Ffh Signal recognition 94.0 1.9 4.1E-05 47.8 15.7 74 98-174 79-157 (451)
406 COG0396 sufC Cysteine desulfur 94.0 0.5 1.1E-05 47.3 10.3 26 116-141 30-55 (251)
407 PRK06731 flhF flagellar biosyn 94.0 0.34 7.3E-06 51.4 10.0 90 116-207 75-166 (270)
408 PRK05342 clpX ATP-dependent pr 94.0 0.083 1.8E-06 59.9 5.8 50 89-138 71-130 (412)
409 PRK10820 DNA-binding transcrip 94.0 0.14 3E-06 60.9 7.9 48 87-138 202-249 (520)
410 cd03222 ABC_RNaseL_inhibitor T 94.0 0.4 8.7E-06 47.4 10.0 23 116-138 25-47 (177)
411 PRK04040 adenylate kinase; Pro 94.0 0.043 9.4E-07 55.0 3.2 23 116-138 2-24 (188)
412 cd01121 Sms Sms (bacterial rad 94.0 0.31 6.6E-06 54.6 10.1 83 115-205 81-168 (372)
413 PRK10463 hydrogenase nickel in 93.9 0.28 6E-06 52.1 9.2 87 114-206 102-195 (290)
414 cd01125 repA Hexameric Replica 93.9 0.25 5.5E-06 52.2 9.1 21 118-138 3-23 (239)
415 PRK13539 cytochrome c biogenes 93.9 0.26 5.7E-06 50.7 9.0 24 116-139 28-51 (207)
416 PRK14723 flhF flagellar biosyn 93.9 0.33 7.1E-06 58.7 10.8 87 116-205 185-273 (767)
417 cd03281 ABC_MSH5_euk MutS5 hom 93.9 0.078 1.7E-06 54.5 5.0 23 116-138 29-51 (213)
418 COG2019 AdkA Archaeal adenylat 93.9 0.054 1.2E-06 50.7 3.3 23 116-138 4-26 (189)
419 PRK10416 signal recognition pa 93.9 0.2 4.3E-06 54.8 8.3 25 115-139 113-137 (318)
420 TIGR03575 selen_PSTK_euk L-ser 93.9 0.13 2.9E-06 56.1 6.9 21 119-139 2-22 (340)
421 COG1936 Predicted nucleotide k 93.8 0.042 9.2E-07 52.0 2.6 20 118-137 2-21 (180)
422 PRK03846 adenylylsulfate kinas 93.8 0.14 3E-06 52.2 6.7 25 114-138 22-46 (198)
423 PRK04328 hypothetical protein; 93.8 0.25 5.4E-06 52.3 8.8 41 114-156 21-61 (249)
424 COG1066 Sms Predicted ATP-depe 93.8 0.22 4.9E-06 54.1 8.2 83 115-206 92-179 (456)
425 PF01078 Mg_chelatase: Magnesi 93.8 0.11 2.4E-06 51.8 5.5 42 89-138 3-44 (206)
426 PRK14721 flhF flagellar biosyn 93.7 0.28 6E-06 55.4 9.2 88 115-204 190-278 (420)
427 cd02028 UMPK_like Uridine mono 93.7 0.11 2.4E-06 51.8 5.5 22 118-139 1-22 (179)
428 cd00267 ABC_ATPase ABC (ATP-bi 93.7 0.29 6.4E-06 47.7 8.5 118 117-240 26-145 (157)
429 PRK09435 membrane ATPase/prote 93.7 0.21 4.5E-06 54.6 8.0 37 99-139 43-79 (332)
430 cd03229 ABC_Class3 This class 93.7 0.26 5.6E-06 49.3 8.2 23 116-138 26-48 (178)
431 PRK06002 fliI flagellum-specif 93.6 0.31 6.7E-06 55.2 9.3 87 115-204 164-263 (450)
432 PRK03839 putative kinase; Prov 93.6 0.051 1.1E-06 54.6 2.9 22 118-139 2-23 (180)
433 PF00006 ATP-synt_ab: ATP synt 93.5 0.15 3.3E-06 51.9 6.2 83 116-204 15-114 (215)
434 TIGR01360 aden_kin_iso1 adenyl 93.5 0.06 1.3E-06 54.6 3.4 24 115-138 2-25 (188)
435 PF06745 KaiC: KaiC; InterPro 93.5 0.074 1.6E-06 55.7 4.1 86 114-204 17-124 (226)
436 TIGR01447 recD exodeoxyribonuc 93.5 0.26 5.7E-06 58.8 9.1 22 117-138 161-182 (586)
437 PRK08533 flagellar accessory p 93.5 0.3 6.5E-06 51.0 8.5 49 115-167 23-71 (230)
438 cd03217 ABC_FeS_Assembly ABC-t 93.5 0.39 8.5E-06 49.1 9.3 24 116-139 26-49 (200)
439 PRK00625 shikimate kinase; Pro 93.4 0.054 1.2E-06 53.3 2.7 21 118-138 2-22 (173)
440 COG0003 ArsA Predicted ATPase 93.4 0.1 2.3E-06 56.5 5.1 48 116-165 2-49 (322)
441 PRK13765 ATP-dependent proteas 93.4 0.14 2.9E-06 61.4 6.5 75 88-172 30-104 (637)
442 TIGR02329 propionate_PrpR prop 93.4 0.18 3.8E-06 59.3 7.3 47 89-139 212-258 (526)
443 PF00625 Guanylate_kin: Guanyl 93.4 0.086 1.9E-06 53.0 4.2 37 116-154 2-38 (183)
444 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.35 7.6E-06 50.8 9.0 40 115-156 19-58 (229)
445 COG0465 HflB ATP-dependent Zn 93.4 0.65 1.4E-05 54.3 11.6 184 86-294 147-357 (596)
446 PF03193 DUF258: Protein of un 93.3 0.11 2.5E-06 49.6 4.6 36 95-139 23-58 (161)
447 KOG1532 GTPase XAB1, interacts 93.3 0.064 1.4E-06 54.3 3.0 28 113-140 16-43 (366)
448 PRK11388 DNA-binding transcrip 93.3 0.26 5.7E-06 60.7 9.1 48 88-139 324-371 (638)
449 COG0714 MoxR-like ATPases [Gen 93.3 0.16 3.6E-06 56.5 6.7 64 89-165 24-87 (329)
450 PRK15453 phosphoribulokinase; 93.3 0.32 6.8E-06 51.1 8.1 24 115-138 4-27 (290)
451 PF13245 AAA_19: Part of AAA d 93.3 0.074 1.6E-06 43.9 2.9 22 117-138 11-32 (76)
452 PF13504 LRR_7: Leucine rich r 93.3 0.043 9.3E-07 30.1 1.0 15 525-539 2-16 (17)
453 cd03283 ABC_MutS-like MutS-lik 93.3 0.11 2.3E-06 52.9 4.7 22 117-138 26-47 (199)
454 TIGR02524 dot_icm_DotB Dot/Icm 93.3 0.093 2E-06 58.4 4.6 88 117-208 135-225 (358)
455 COG0467 RAD55 RecA-superfamily 93.3 0.091 2E-06 56.4 4.4 51 114-168 21-71 (260)
456 COG4181 Predicted ABC-type tra 93.2 0.87 1.9E-05 43.1 9.9 83 159-242 122-214 (228)
457 PRK06995 flhF flagellar biosyn 93.2 0.43 9.3E-06 54.9 9.8 89 115-205 255-344 (484)
458 cd00227 CPT Chloramphenicol (C 93.2 0.068 1.5E-06 53.3 3.0 23 117-139 3-25 (175)
459 cd03215 ABC_Carb_Monos_II This 93.1 0.39 8.4E-06 48.2 8.5 24 116-139 26-49 (182)
460 TIGR02788 VirB11 P-type DNA tr 93.1 0.15 3.2E-06 56.1 5.8 87 116-207 144-230 (308)
461 COG5635 Predicted NTPase (NACH 93.1 0.12 2.6E-06 65.2 5.7 139 116-258 222-371 (824)
462 cd02024 NRK1 Nicotinamide ribo 93.1 0.059 1.3E-06 53.6 2.4 22 118-139 1-22 (187)
463 PRK00131 aroK shikimate kinase 93.1 0.071 1.5E-06 53.3 3.0 24 116-139 4-27 (175)
464 TIGR02655 circ_KaiC circadian 93.0 0.25 5.5E-06 58.1 8.0 62 98-167 249-310 (484)
465 COG2274 SunT ABC-type bacterio 93.0 0.39 8.5E-06 58.4 9.7 23 116-138 499-521 (709)
466 KOG2170 ATPase of the AAA+ sup 93.0 0.25 5.5E-06 51.2 6.7 112 89-216 82-199 (344)
467 TIGR00764 lon_rel lon-related 93.0 0.23 5.1E-06 59.7 7.7 74 88-172 17-91 (608)
468 TIGR01359 UMP_CMP_kin_fam UMP- 93.0 0.061 1.3E-06 54.3 2.4 21 118-138 1-21 (183)
469 KOG0651 26S proteasome regulat 93.0 0.12 2.5E-06 53.7 4.3 26 114-139 164-189 (388)
470 PRK12339 2-phosphoglycerate ki 92.9 0.086 1.9E-06 53.1 3.4 24 116-139 3-26 (197)
471 TIGR02322 phosphon_PhnN phosph 92.9 0.078 1.7E-06 53.2 3.0 23 117-139 2-24 (179)
472 PRK15424 propionate catabolism 92.8 0.29 6.3E-06 57.5 7.9 47 89-139 219-265 (538)
473 COG1224 TIP49 DNA helicase TIP 92.8 0.38 8.1E-06 51.1 7.7 48 88-139 38-88 (450)
474 PLN02348 phosphoribulokinase 92.8 0.55 1.2E-05 52.0 9.5 25 114-138 47-71 (395)
475 PRK08972 fliI flagellum-specif 92.8 0.43 9.3E-06 53.8 8.8 86 115-204 161-261 (444)
476 KOG0473 Leucine-rich repeat pr 92.8 0.0069 1.5E-07 59.4 -4.4 87 513-601 30-117 (326)
477 KOG0742 AAA+-type ATPase [Post 92.8 1.1 2.4E-05 48.5 11.2 27 113-139 381-407 (630)
478 KOG0739 AAA+-type ATPase [Post 92.7 0.33 7.1E-06 50.0 7.0 97 89-206 133-236 (439)
479 cd01135 V_A-ATPase_B V/A-type 92.7 0.37 8E-06 50.6 7.7 91 115-205 68-176 (276)
480 PRK14737 gmk guanylate kinase; 92.7 0.1 2.2E-06 52.2 3.6 25 115-139 3-27 (186)
481 cd00984 DnaB_C DnaB helicase C 92.7 0.54 1.2E-05 49.9 9.4 53 115-170 12-64 (242)
482 cd02023 UMPK Uridine monophosp 92.6 0.074 1.6E-06 54.4 2.5 21 118-138 1-21 (198)
483 PRK11823 DNA repair protein Ra 92.6 0.7 1.5E-05 53.5 10.6 39 115-155 79-117 (446)
484 PRK10751 molybdopterin-guanine 92.5 0.13 2.7E-06 50.2 3.8 25 115-139 5-29 (173)
485 PF13479 AAA_24: AAA domain 92.5 0.44 9.6E-06 49.1 8.1 20 117-136 4-23 (213)
486 KOG1947 Leucine rich repeat pr 92.5 0.013 2.8E-07 70.3 -3.9 110 968-1077 187-308 (482)
487 TIGR00455 apsK adenylylsulfate 92.5 0.55 1.2E-05 47.2 8.7 24 115-138 17-40 (184)
488 PF03266 NTPase_1: NTPase; In 92.5 0.11 2.5E-06 50.8 3.5 21 119-139 2-22 (168)
489 COG4133 CcmA ABC-type transpor 92.5 0.82 1.8E-05 44.3 8.8 22 117-138 29-50 (209)
490 TIGR01313 therm_gnt_kin carboh 92.4 0.38 8.2E-06 47.3 7.2 21 119-139 1-21 (163)
491 COG3640 CooC CO dehydrogenase 92.4 0.16 3.5E-06 50.8 4.4 21 118-138 2-22 (255)
492 PRK14738 gmk guanylate kinase; 92.4 0.13 2.9E-06 52.7 4.0 25 114-138 11-35 (206)
493 cd01136 ATPase_flagellum-secre 92.3 0.81 1.8E-05 49.9 10.0 85 116-204 69-168 (326)
494 PRK08927 fliI flagellum-specif 92.3 0.54 1.2E-05 53.2 8.9 86 115-204 157-257 (442)
495 PRK06217 hypothetical protein; 92.3 0.092 2E-06 52.8 2.7 22 118-139 3-24 (183)
496 PRK10923 glnG nitrogen regulat 92.3 0.43 9.3E-06 56.6 8.8 47 89-139 138-184 (469)
497 COG0194 Gmk Guanylate kinase [ 92.3 0.2 4.2E-06 48.5 4.6 24 116-139 4-27 (191)
498 COG2401 ABC-type ATPase fused 92.3 0.18 3.9E-06 54.5 4.7 50 90-139 372-432 (593)
499 TIGR00041 DTMP_kinase thymidyl 92.3 0.44 9.6E-06 48.5 7.7 23 117-139 4-26 (195)
500 PRK09519 recA DNA recombinatio 92.3 0.42 9.2E-06 58.0 8.5 85 114-205 58-148 (790)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-74 Score=688.57 Aligned_cols=703 Identities=31% Similarity=0.462 Sum_probs=521.3
Q ss_pred HHHHHHHHHHHhhcccCchHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHhhcC--C----------cccc-CCCcc--
Q 045303 2 LEMIQAVLAESEDRQTRETSVKTWLDNLQNLAYDVQDVLDEFETEALRRELLLQE--P----------AAAD-QPSSS-- 66 (1206)
Q Consensus 2 l~~~~~~l~~a~~~~~~~~~~~~w~~~~~~~~~~~ed~ld~~~~~~~~~~~~~~~--~----------~~~~-~~~~~-- 66 (1206)
|..+|++++||++++.+...+..|.+.+++++|++||.++.+..+....+....- . .... .....
T Consensus 37 L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~ 116 (889)
T KOG4658|consen 37 LKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYK 116 (889)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHh
Confidence 6789999999999999999999999999999999999999998876554222100 0 0000 00000
Q ss_pred --------------ccc------cCCCcCCCCCcccccCCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCC
Q 045303 67 --------------ANT------IGKSRDMGQRLPTTSLVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGG 126 (1206)
Q Consensus 67 --------------~~~------~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~G 126 (1206)
+.. .+.........++.+.....+ ||.++.++++...|.+.+ ..+++|+||||
T Consensus 117 ~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGG 189 (889)
T KOG4658|consen 117 YGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGG 189 (889)
T ss_pred HHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCc
Confidence 000 011011111122333333334 999999999999997653 38999999999
Q ss_pred CcHHHHHHHHhcCcc-cccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCC--CCHHHHHHHHHHHhCCCceEEEEeC
Q 045303 127 VGKTTLAQLVYNDDR-VQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDD--NNLNSLQVKLKERLSGKKFLLVLDD 203 (1206)
Q Consensus 127 iGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l~~~~~LlvlDd 203 (1206)
+||||||++++++.. ++.+|+.++||.+|+.++...+..+|++.++...... ...++.+..+.+.|+++|++||+||
T Consensus 190 vGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDD 269 (889)
T KOG4658|consen 190 VGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDD 269 (889)
T ss_pred ccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEec
Confidence 999999999999887 9999999999999999999999999999987754332 3346888999999999999999999
Q ss_pred CCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHH
Q 045303 204 VWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGE 282 (1206)
Q Consensus 204 v~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (1206)
||+.. +|+.+..+++....||+|++|||+..|+.. ++....++++.|+++|||++|.+.++.... ...+..+++|+
T Consensus 270 IW~~~--dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak 346 (889)
T KOG4658|consen 270 IWEEV--DWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAK 346 (889)
T ss_pred ccccc--cHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHH
Confidence 99975 699999999999899999999999999988 777889999999999999999999976533 33445899999
Q ss_pred HHHHhcCCcchHHHHHHhhhCCCCChhHHHHHHhhhccc----cC--CCCchHHHHHhhcCCChhHHHHHhhhcCCCCCc
Q 045303 283 QIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKNDIWN----LR--DSDILPALRVSYHFLPPQLKQCFAYCSLFPKDY 356 (1206)
Q Consensus 283 ~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~----~~--~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp~~~ 356 (1206)
+++++|+|+|||++++|+.|+.+....+|+++.....+. .+ .+.+..++..||+.||++.|.||+|||+||+||
T Consensus 347 ~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~ 426 (889)
T KOG4658|consen 347 EVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDY 426 (889)
T ss_pred HHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCccc
Confidence 999999999999999999999999999999999865443 21 237899999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHcCCcccccCCCCHHHHHHHHHHHHHhCCccccccC--CCCceeehHHHHHHHHHhhc-----cceEE
Q 045303 357 EFQEEEIILLWTAEGFLDQEYSGRKMEDLGREFVRELHSRSLFQQSSK--GASRFVMHDLINDLARWAAG-----ELYFR 429 (1206)
Q Consensus 357 ~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~--~~~~~~~H~lv~~~~~~~~~-----~~~~~ 429 (1206)
.|+.+.++.+|+|+||+.....+..++++|++|+.+||+++|++.... ...++.|||+||++|.++|+ +++..
T Consensus 427 ~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~i 506 (889)
T KOG4658|consen 427 EIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQI 506 (889)
T ss_pred ccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceE
Confidence 999999999999999999877788999999999999999999988662 35689999999999999999 55544
Q ss_pred eccc--cccccccccccceeEEEEecCCCccccccccccCCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEe
Q 045303 430 MEDT--LAGENRQKFSQSLRHFSYSCGECDGEKRLKSVSDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSL 507 (1206)
Q Consensus 430 ~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L 507 (1206)
+... ....+.......+|++++++.... ....-..++++++|.+..... -...+...+|..++.|+||||
T Consensus 507 v~~~~~~~~~~~~~~~~~~rr~s~~~~~~~---~~~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 507 VSDGVGLSEIPQVKSWNSVRRMSLMNNKIE---HIAGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred EECCcCccccccccchhheeEEEEeccchh---hccCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEEC
Confidence 4332 111122234567899999876432 233344666899999887631 123445677999999999999
Q ss_pred cCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccC
Q 045303 508 CGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEM 587 (1206)
Q Consensus 508 ~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~ 587 (1206)
++|..+..+|++|++|.+||||+++++.|+.+|..+.+|+.|.+|++..+.....+|..+..|.+||+|.+.... ...-
T Consensus 579 s~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~ 657 (889)
T KOG4658|consen 579 SGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSND 657 (889)
T ss_pred CCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccc
Confidence 999999999999999999999999999999999999999999999999998777777777889999999987654 2222
Q ss_pred CcccCCcCccccCCceEeCCCCCCCcccccCcccCC---ceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcc
Q 045303 588 PKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLR---GTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSER 664 (1206)
Q Consensus 588 p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~---~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 664 (1206)
...++.+.+|++|....+...+...+..+..+..|. ..+.+ .. .........+..+.+|+.|.+..+...+.
T Consensus 658 ~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~---~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~ 732 (889)
T KOG4658|consen 658 KLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI---EG--CSKRTLISSLGSLGNLEELSILDCGISEI 732 (889)
T ss_pred hhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh---cc--cccceeecccccccCcceEEEEcCCCchh
Confidence 223455566666654444333321122222222221 11111 11 12233445567777888888877665422
Q ss_pred hhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCC--CCCCCCCCCCCCce
Q 045303 665 CEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMS--TSLPSVGQLPFLKE 730 (1206)
Q Consensus 665 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~--~~l~~l~~l~~L~~ 730 (1206)
.............++++..+.+..+.....+.|.. ..++|+.|.+..|.. ..+|....+..++.
T Consensus 733 ~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~--f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~ 798 (889)
T KOG4658|consen 733 VIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL--FAPHLTSLSLVSCRLLEDIIPKLKALLELKE 798 (889)
T ss_pred hcccccccchhhhHHHHHHHHhhccccccccchhh--ccCcccEEEEecccccccCCCHHHHhhhccc
Confidence 11000000000012233444444444444455543 467777777777776 44454555555554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.6e-58 Score=591.16 Aligned_cols=691 Identities=21% Similarity=0.268 Sum_probs=451.1
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEE---cCC-----
Q 045303 86 VTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCV---SDD----- 157 (1206)
Q Consensus 86 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~----- 157 (1206)
...+.+|||++.++++..++.-. .+++++|+|+||||+||||||+++|+ ++..+|++.+|+.. ...
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~----~~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLE----SEEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHccc----cCceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 34567999999999999988543 34689999999999999999999998 67788888877642 110
Q ss_pred ------CC-hHHHHHHHHHhccCCCC-CCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEE
Q 045303 158 ------FD-VPRVTKSILESIANVTV-DDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIV 229 (1206)
Q Consensus 158 ------~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~il 229 (1206)
.. ...+..+++..+..... .... ...+++.++++|+||||||||+. ..|+.+.......++|++||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 00 12233444444322211 1111 24577888999999999999875 46777766555567899999
Q ss_pred EEccchHHHhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCChh
Q 045303 230 VTTRNLVVAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPR 309 (1206)
Q Consensus 230 iTtr~~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 309 (1206)
||||+..++..++..+.|+++.++++||+++|++.||+.. .++.+..+++++|+++|+|+||||+++|++|+++ +..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 9999999987777778999999999999999999998754 3455678899999999999999999999999986 678
Q ss_pred HHHHHHhhhccccCCCCchHHHHHhhcCCCh-hHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCCCCHHHHHHH
Q 045303 310 DWEFVLKNDIWNLRDSDILPALRVSYHFLPP-QLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMEDLGRE 388 (1206)
Q Consensus 310 ~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~-~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~ 388 (1206)
+|+.++.+.... .+..|.++|+.||+.|++ ..|.||+++|+|+.++.++ .+..|++.+.... +.
T Consensus 406 ~W~~~l~~L~~~-~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~ 470 (1153)
T PLN03210 406 DWMDMLPRLRNG-LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NI 470 (1153)
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hh
Confidence 999998865432 344899999999999986 5999999999999886553 4667777654432 22
Q ss_pred HHHHHHhCCccccccCCCCceeehHHHHHHHHHhhccceE-------Eeccc-ccc-ccccccccceeEEEEecCCCccc
Q 045303 389 FVRELHSRSLFQQSSKGASRFVMHDLINDLARWAAGELYF-------RMEDT-LAG-ENRQKFSQSLRHFSYSCGECDGE 459 (1206)
Q Consensus 389 ~l~~L~~~~ll~~~~~~~~~~~~H~lv~~~~~~~~~~~~~-------~~~~~-~~~-~~~~~~~~~~r~ls~~~~~~~~~ 459 (1206)
.++.|++++|++... .++.||+++|++|+++++++.. -+... ... .....-.+.++.+++........
T Consensus 471 ~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred ChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 388999999998753 3699999999999999876531 11000 000 00011234567777665433211
Q ss_pred -cccccccCCCCceEecccCCcccccchhhHHHHHHHhccC-CceeEEEecCCCCcccCCccccCccccceeeccccccc
Q 045303 460 -KRLKSVSDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHL-PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQ 537 (1206)
Q Consensus 460 -~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~ 537 (1206)
.....+.++.+|+.|.+...............+.. |..+ .+||.|.+.++ .+..+|..| .+.+|+.|++++|.++
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCcccc
Confidence 11234667888888876543100001111222333 3333 46999999998 888999877 5789999999999999
Q ss_pred cccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCcccCCcCccccCCceEeCCCCCCCccccc
Q 045303 538 ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELK 617 (1206)
Q Consensus 538 ~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~ 617 (1206)
.+|..+..+++|+.|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+.|++..+.
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~----------- 692 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCE----------- 692 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCC-----------
Confidence 9999899999999999998877888874 8889999999999988788899888888888888543321
Q ss_pred CcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCC
Q 045303 618 SLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSW 697 (1206)
Q Consensus 618 ~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 697 (1206)
.+..+. ..+ ++++|+.|++++|..... ++ ....+|+.|++.++.+..+|..
T Consensus 693 ~L~~Lp-------------------~~i-~l~sL~~L~Lsgc~~L~~-------~p--~~~~nL~~L~L~~n~i~~lP~~ 743 (1153)
T PLN03210 693 NLEILP-------------------TGI-NLKSLYRLNLSGCSRLKS-------FP--DISTNISWLDLDETAIEEFPSN 743 (1153)
T ss_pred CcCccC-------------------CcC-CCCCCCEEeCCCCCCccc-------cc--cccCCcCeeecCCCcccccccc
Confidence 111110 111 456777777776542110 00 0134667777777766666665
Q ss_pred cCCCCCCCccEEEEcccCCCCCC---------CCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEeccCccc
Q 045303 698 LGDSSFSKLARLELRLCMSTSLP---------SVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMRE 768 (1206)
Q Consensus 698 ~~~~~~~~L~~L~L~~~~~~~l~---------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 768 (1206)
+ .+++|+.|.+.++....+. .....++|+.|++++|.....++..+.. +++|+.|++++|..
T Consensus 744 ~---~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~------L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 744 L---RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN------LHKLEHLEIENCIN 814 (1153)
T ss_pred c---cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC------CCCCCEEECCCCCC
Confidence 4 3566666666654331110 0112345555555555444433333222 44444444444443
Q ss_pred ccccccCCCCCcccccCCcccEEeeccCcccccCCCCCCCCccEEEEecccCccccccCCCCcceEEecCCCcceecCcc
Q 045303 769 WEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRLLLLETLDITSCHQLLVTIQCLPALSELQIDGCKRVVFSSPH 848 (1206)
Q Consensus 769 l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 848 (1206)
++.+.. ...+++|+.|++++|+.+. .+|.... +|+.|++++|.+..+
T Consensus 815 L~~LP~-------~~~L~sL~~L~Ls~c~~L~-~~p~~~~---------------------nL~~L~Ls~n~i~~i---- 861 (1153)
T PLN03210 815 LETLPT-------GINLESLESLDLSGCSRLR-TFPDIST---------------------NISDLNLSRTGIEEV---- 861 (1153)
T ss_pred cCeeCC-------CCCccccCEEECCCCCccc-ccccccc---------------------ccCEeECCCCCCccC----
Confidence 333211 0023444444444444443 3443333 455555555443322
Q ss_pred hhhhhhhhhcCCCCCcceeeeccCCChhhhc-ccCCCCCCCeEEEeccCCCcCC
Q 045303 849 LVHAVNAWMQNSSTSLESLAIGRCDSLTYIA-RIQLPPSLKRLTIYWCHNLKSL 901 (1206)
Q Consensus 849 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~l~~~ 901 (1206)
|. ....+++|+.|++++|+.++.++ ....+++|+.+++++|.++..+
T Consensus 862 -----P~-si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 862 -----PW-WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred -----hH-HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 11 12345566666666666665542 2234456666666666665543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-38 Score=411.87 Aligned_cols=486 Identities=18% Similarity=0.179 Sum_probs=282.7
Q ss_pred HHHhccCCceeEEEecCCCCcccCCccc-cCccccceeeccccccc-cccccccccccccEEecCCCcccccccccccCC
Q 045303 493 KMLLNHLPRLRVFSLCGYSNIFSLPNEI-GNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNL 570 (1206)
Q Consensus 493 ~~~~~~~~~L~~L~L~~~~~~~~lp~~~-~~l~~L~~L~Ls~n~i~-~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L 570 (1206)
+..|..+++|++|+|++|.....+|..+ ..+++|++|+|++|.+. .+|. ..+++|++|+|++|.....+|..++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 3457788888888888884334677654 48888888888888887 5554 467888888888886666778888888
Q ss_pred CccceeecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCC
Q 045303 571 TKLRHLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVN 650 (1206)
Q Consensus 571 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~ 650 (1206)
++|++|++++|.+...+|..++++++|++|++..+. .....+..+..+++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~------------------------------l~~~~p~~l~~l~~ 213 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ------------------------------LVGQIPRELGQMKS 213 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCC------------------------------CcCcCChHHcCcCC
Confidence 888888888888666777778888877777543321 11122344556667
Q ss_pred CCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCC-CCCCCcCCCCCCCccEEEEcccCC-CCCC-CCCCCCC
Q 045303 651 LQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGT-KFPSWLGDSSFSKLARLELRLCMS-TSLP-SVGQLPF 727 (1206)
Q Consensus 651 L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~-~~l~-~l~~l~~ 727 (1206)
|+.|++++|.+....+ ..+..+++|+.|++++|... .+|..+. .+++|+.|++++|.+ ..+| .++.+++
T Consensus 214 L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~L~~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 285 (968)
T PLN00113 214 LKWIYLGYNNLSGEIP------YEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFLYQNKLSGPIPPSIFSLQK 285 (968)
T ss_pred ccEEECcCCccCCcCC------hhHhcCCCCCEEECcCceeccccChhHh--CCCCCCEEECcCCeeeccCchhHhhccC
Confidence 7777777665432111 12233445555555555443 3344443 345555555555554 2232 3444555
Q ss_pred CceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCC---
Q 045303 728 LKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLP--- 804 (1206)
Q Consensus 728 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp--- 804 (1206)
|+.|++++|......+..+ ..+++|+.|++++ |.+.+.+|
T Consensus 286 L~~L~Ls~n~l~~~~p~~~------------------------------------~~l~~L~~L~l~~-n~~~~~~~~~~ 328 (968)
T PLN00113 286 LISLDLSDNSLSGEIPELV------------------------------------IQLQNLEILHLFS-NNFTGKIPVAL 328 (968)
T ss_pred cCEEECcCCeeccCCChhH------------------------------------cCCCCCcEEECCC-CccCCcCChhH
Confidence 5555555444332222211 1234444444444 33333333
Q ss_pred CCCCCccEEEEeccc---CccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhccc
Q 045303 805 RRLLLLETLDITSCH---QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARI 881 (1206)
Q Consensus 805 ~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 881 (1206)
..+++|+.|++++|. ..+..+..+++|+.|++++|.+.... +.. +..+++|+.|++++|...
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~--------p~~-~~~~~~L~~L~l~~n~l~------ 393 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--------PEG-LCSSGNLFKLILFSNSLE------ 393 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC--------Chh-HhCcCCCCEEECcCCEec------
Confidence 123333334333333 12222333444444444444322110 000 011222333333222110
Q ss_pred CCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCccc
Q 045303 882 QLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLES 961 (1206)
Q Consensus 882 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~ 961 (1206)
..++......++|+.|++++|.....
T Consensus 394 ------------------------------------------------------~~~p~~~~~~~~L~~L~L~~n~l~~~ 419 (968)
T PLN00113 394 ------------------------------------------------------GEIPKSLGACRSLRRVRLQDNSFSGE 419 (968)
T ss_pred ------------------------------------------------------ccCCHHHhCCCCCCEEECcCCEeeeE
Confidence 00110111113566666666655544
Q ss_pred chhhc-CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCC
Q 045303 962 LAERL-DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNL 1040 (1206)
Q Consensus 962 ~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 1040 (1206)
++..+ ..++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+ ..++|+.|++++|.+.+.+|..+.++
T Consensus 420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhh
Confidence 44433 34778888888888877777777778888888888887777776554 34778888888888887788778888
Q ss_pred CccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeec
Q 045303 1041 TSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEIS 1119 (1206)
Q Consensus 1041 ~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~ 1119 (1206)
++|++|+|++|.+.+.+|.. ..+++|++|+|++|.+++.+|. .+..+++|+.|+|++ |.....+|..+..+..|...
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~l 576 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA-SFSEMPVLSQLDLSQ-NQLSGEIPKNLGNVESLVQV 576 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh-hHhCcccCCEEECCC-CcccccCChhHhcCcccCEE
Confidence 88888888888887777765 6677888888888888877776 677788888888875 33334556544444333333
Q ss_pred cCCCCccc
Q 045303 1120 DMPDLECL 1127 (1206)
Q Consensus 1120 ~~~~~~~~ 1127 (1206)
++++|.+.
T Consensus 577 ~ls~N~l~ 584 (968)
T PLN00113 577 NISHNHLH 584 (968)
T ss_pred eccCCcce
Confidence 33333333
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.1e-39 Score=352.26 Aligned_cols=276 Identities=38% Similarity=0.652 Sum_probs=222.3
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccC
Q 045303 94 REKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIAN 173 (1206)
Q Consensus 94 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 173 (1206)
||.++++|.++|.... .+.++|+|+|+||+||||||++++++.+.+.+|+.++|+.++...+..+++..++.++..
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 478999999999999999999999876688999999999999999999999999999987
Q ss_pred CCC---CCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHhhcCC-CCceeC
Q 045303 174 VTV---DDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMRA-DPVYQL 249 (1206)
Q Consensus 174 ~~~---~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~~~~-~~~~~l 249 (1206)
... ...+.++....+++.+.++++||||||||+.. .|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccccccccccccccccc
Confidence 643 45677889999999999999999999998764 788887777777779999999999988766554 678999
Q ss_pred CCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCChhHHHHHHhhhccccC-----C
Q 045303 250 KKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKNDIWNLR-----D 324 (1206)
Q Consensus 250 ~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~~~-----~ 324 (1206)
++|+++||++||.+.++... ....+...+.+++|+++|+|+||||+++|++++.+....+|..+++....... .
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999986544 12334456789999999999999999999999666577889998865443332 2
Q ss_pred CCchHHHHHhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccc
Q 045303 325 SDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQE 376 (1206)
Q Consensus 325 ~~v~~~l~~s~~~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~ 376 (1206)
..+..++..||+.||++.|+||.+||+||+++.|+.+.++++|+++|++...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 3799999999999999999999999999999999999999999999998753
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-37 Score=403.08 Aligned_cols=509 Identities=17% Similarity=0.170 Sum_probs=349.1
Q ss_pred ceeEEEEecCCCccccccccccCCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEecCCCCcccCCccccCcc
Q 045303 445 SLRHFSYSCGECDGEKRLKSVSDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIFSLPNEIGNLK 524 (1206)
Q Consensus 445 ~~r~ls~~~~~~~~~~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~ 524 (1206)
.++.+.+........ ....+..+++|+.|.+.+.. +...++...+..+++|++|+|++|.....+|. +.++
T Consensus 70 ~v~~L~L~~~~i~~~-~~~~~~~l~~L~~L~Ls~n~------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~ 140 (968)
T PLN00113 70 RVVSIDLSGKNISGK-ISSAIFRLPYIQTINLSNNQ------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP 140 (968)
T ss_pred cEEEEEecCCCcccc-CChHHhCCCCCCEEECCCCc------cCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence 466666655432221 12346678899998876642 22345667788999999999999955456664 5689
Q ss_pred ccceeeccccccc-cccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCcccCCcCccccCCce
Q 045303 525 HLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGRF 603 (1206)
Q Consensus 525 ~L~~L~Ls~n~i~-~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~ 603 (1206)
+|++|+|++|.+. .+|..++++++|++|+|++|.....+|..++++++|++|++++|.+...+|..++++++|++|++.
T Consensus 141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence 9999999999998 789999999999999999997778899999999999999999999778889999999999999654
Q ss_pred EeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccE
Q 045303 604 VVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQE 683 (1206)
Q Consensus 604 ~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~ 683 (1206)
.+.. ....+..+.++++|+.|++++|.+... .+..+..+++|+.
T Consensus 221 ~n~l------------------------------~~~~p~~l~~l~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~ 264 (968)
T PLN00113 221 YNNL------------------------------SGEIPYEIGGLTSLNHLDLVYNNLTGP------IPSSLGNLKNLQY 264 (968)
T ss_pred CCcc------------------------------CCcCChhHhcCCCCCEEECcCceeccc------cChhHhCCCCCCE
Confidence 3221 112334467778888888888765432 2234455678888
Q ss_pred EEEEecCCC-CCCCCcCCCCCCCccEEEEcccCC-CCCC-CCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccE
Q 045303 684 LTITGYGGT-KFPSWLGDSSFSKLARLELRLCMS-TSLP-SVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLET 760 (1206)
Q Consensus 684 L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~-~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~ 760 (1206)
|++++|.+. .+|.++. .+++|+.|++++|.+ ..+| .++.+++|+.|++++|......+..+.. +++|+.
T Consensus 265 L~L~~n~l~~~~p~~l~--~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~------l~~L~~ 336 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS------LPRLQV 336 (968)
T ss_pred EECcCCeeeccCchhHh--hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc------CCCCCE
Confidence 888888765 4666665 678899999998888 4455 5788889999999888766655544443 677777
Q ss_pred EeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCC---CCCCccEEEEeccc---CccccccCCCCcceE
Q 045303 761 LSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPR---RLLLLETLDITSCH---QLLVTIQCLPALSEL 834 (1206)
Q Consensus 761 L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L 834 (1206)
|+++++....... ...+.+++|+.|++++ |++.+.+|. .+++|+.|++++|. ..+..+..+++|+.|
T Consensus 337 L~L~~n~l~~~~p------~~l~~~~~L~~L~Ls~-n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 337 LQLWSNKFSGEIP------KNLGKHNNLTVLDLST-NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred EECcCCCCcCcCC------hHHhCCCCCcEEECCC-CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 7777764322211 1334467778888877 566666663 34566666666665 233445556666666
Q ss_pred EecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCeEEEeccCCCcCCcCcccccccccCC
Q 045303 835 QIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGC 914 (1206)
Q Consensus 835 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 914 (1206)
++++|.+.... + ..+..+++|+.|++++|.....++
T Consensus 410 ~L~~n~l~~~~--------p-~~~~~l~~L~~L~Ls~N~l~~~~~----------------------------------- 445 (968)
T PLN00113 410 RLQDNSFSGEL--------P-SEFTKLPLVYFLDISNNNLQGRIN----------------------------------- 445 (968)
T ss_pred ECcCCEeeeEC--------C-hhHhcCCCCCEEECcCCcccCccC-----------------------------------
Confidence 66665433211 1 112334444555554443211110
Q ss_pred CCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCc
Q 045303 915 TSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHH 994 (1206)
Q Consensus 915 ~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 994 (1206)
......++|+.|++++|.....+|......+|+.|++++|.+.+.+|..+.++++
T Consensus 446 -------------------------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 446 -------------------------SRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred -------------------------hhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence 0001123455555555555555555555567777777777777777777777778
Q ss_pred cceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeC
Q 045303 995 LQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRG 1073 (1206)
Q Consensus 995 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~ 1073 (1206)
|+.|+|++|.+.+.+|..+.++++|++|+|++|.+.+.+|..|..+++|+.|+|++|++.+.+|.. ..+++|+.|++++
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 888888888777777777777778888888888777777777777788888888888777766655 6677778888888
Q ss_pred cCCCCCCCc
Q 045303 1074 LKISKPLPE 1082 (1206)
Q Consensus 1074 n~l~~~~p~ 1082 (1206)
|.+.+.+|.
T Consensus 581 N~l~~~~p~ 589 (968)
T PLN00113 581 NHLHGSLPS 589 (968)
T ss_pred CcceeeCCC
Confidence 877777775
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=4.1e-31 Score=268.82 Aligned_cols=465 Identities=22% Similarity=0.262 Sum_probs=256.0
Q ss_pred hccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccce
Q 045303 496 LNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 575 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 575 (1206)
+..+..|.||++++| .+..+|.+++.+..++.|+.++|++..+|..++.+.+|..|+.++| ....+|++++.+..|+.
T Consensus 64 l~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLED 141 (565)
T ss_pred hhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhh
Confidence 344444555555554 4444555555555555555555555555555555555555555554 44444445555555555
Q ss_pred eecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceE
Q 045303 576 LRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALS 655 (1206)
Q Consensus 576 L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 655 (1206)
++..+|+ +..+|.+++.+.+ |..++
T Consensus 142 l~~~~N~-i~slp~~~~~~~~------------------------------------------------------l~~l~ 166 (565)
T KOG0472|consen 142 LDATNNQ-ISSLPEDMVNLSK------------------------------------------------------LSKLD 166 (565)
T ss_pred hhccccc-cccCchHHHHHHH------------------------------------------------------HHHhh
Confidence 5544444 4444444444443 44444
Q ss_pred EeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecC
Q 045303 656 LEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISG 735 (1206)
Q Consensus 656 l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~ 735 (1206)
+.+|.+...++.... +..|++++...|....+|..++ .+.+|..|++.+|.+..+|.|+++..|++|+++.
T Consensus 167 ~~~n~l~~l~~~~i~-------m~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 167 LEGNKLKALPENHIA-------MKRLKHLDCNSNLLETLPPELG--GLESLELLYLRRNKIRFLPEFPGCSLLKELHVGE 237 (565)
T ss_pred ccccchhhCCHHHHH-------HHHHHhcccchhhhhcCChhhc--chhhhHHHHhhhcccccCCCCCccHHHHHHHhcc
Confidence 444443332222211 3467777777787888999887 7899999999999999999999999999999987
Q ss_pred CCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCC---CCCCccE
Q 045303 736 MDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPR---RLLLLET 812 (1206)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~ 812 (1206)
|.+. ..+.+.. ..+++|..|++++ |+++ ..|+ .+.+|++
T Consensus 238 N~i~-~lpae~~-----------------------------------~~L~~l~vLDLRd-Nklk-e~Pde~clLrsL~r 279 (565)
T KOG0472|consen 238 NQIE-MLPAEHL-----------------------------------KHLNSLLVLDLRD-NKLK-EVPDEICLLRSLER 279 (565)
T ss_pred cHHH-hhHHHHh-----------------------------------cccccceeeeccc-cccc-cCchHHHHhhhhhh
Confidence 6532 2222211 1256667777777 7777 6774 3466777
Q ss_pred EEEeccc--CccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeee-ccCCChhhhcccCCCCCCCe
Q 045303 813 LDITSCH--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAI-GRCDSLTYIARIQLPPSLKR 889 (1206)
Q Consensus 813 L~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l-~~~~~l~~~~~~~~~~~L~~ 889 (1206)
|++++|. .++..++++ .|+.|-+.||++..+...-+.+-.. .-|++|.= ..|..+..-...
T Consensus 280 LDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~-------~vLKyLrs~~~~dglS~se~~-------- 343 (565)
T KOG0472|consen 280 LDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQ-------EVLKYLRSKIKDDGLSQSEGG-------- 343 (565)
T ss_pred hcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHH-------HHHHHHHHhhccCCCCCCccc--------
Confidence 7777776 567777777 7888888888765443211111000 00111100 000000000000
Q ss_pred EEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCC---CCccccceEEecccCCcccchhhc
Q 045303 890 LTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNG---NLPQALKYLGVESCSKLESLAERL 966 (1206)
Q Consensus 890 L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~---~~~~~L~~L~l~~~~~l~~~~~~~ 966 (1206)
.-....+..........+ .+.+.|++++.. ++.+|... .-..-+...+++.|...+......
T Consensus 344 -------~e~~~t~~~~~~~~~~~~-------i~tkiL~~s~~q-lt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~ 408 (565)
T KOG0472|consen 344 -------TETAMTLPSESFPDIYAI-------ITTKILDVSDKQ-LTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV 408 (565)
T ss_pred -------ccccCCCCCCcccchhhh-------hhhhhhcccccc-cccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence 000000000000000000 011222222211 11111100 000124455555554332221111
Q ss_pred CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCee
Q 045303 967 DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDL 1046 (1206)
Q Consensus 967 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 1046 (1206)
....+...-+..++..+-+|..+..+++|..|+|++| .+..+|..++.+..||.|+++.|++. .+|..+..+..|+.+
T Consensus 409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtl 486 (565)
T KOG0472|consen 409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETL 486 (565)
T ss_pred HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHH
Confidence 2233333334445555666777788888888888887 67777888888888888888888654 467777777777777
Q ss_pred eeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecC
Q 045303 1047 DIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGG 1099 (1206)
Q Consensus 1047 ~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~ 1099 (1206)
-.++|++....++. ..+.+|.+|||.+|.+. .+|. .++++++|++|.++||
T Consensus 487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp-~LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPP-ILGNMTNLRHLELDGN 538 (565)
T ss_pred HhccccccccChHHhhhhhhcceeccCCCchh-hCCh-hhccccceeEEEecCC
Confidence 77777766554442 77888888888888887 4555 6888888888888873
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=6e-28 Score=257.10 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=106.1
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
++|+.|++++|.+...-+..+..+++|+.|+|++|.+...-+..|..+..|++|+|+.|.+...-...|..+++|++|||
T Consensus 293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 66777888888887777777778888888888888777766677777888888888888887766677888888888888
Q ss_pred ecCCCCccCCCC----CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceec
Q 045303 1049 RGCPSVVSFPED----GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSL 1106 (1206)
Q Consensus 1049 ~~n~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~l 1106 (1206)
++|.+...+.+. ..+++|+.|++.+|++. .+|...|.++++|++|+|.+ |.+.++
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~--NaiaSI 431 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGD--NAIASI 431 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceecCCC--Ccceee
Confidence 888887666544 55788888888888886 67777888888888888854 555544
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.6e-27 Score=253.83 Aligned_cols=128 Identities=14% Similarity=0.119 Sum_probs=105.5
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccc---cccCCCCccCe
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALP---NCMHNLTSLLD 1045 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~ 1045 (1206)
++|+.|++++|++...-+..|..+..|++|.|++|.+...-...|..+.+|++|||++|.+...+. ..|.++++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 567777888888877778889999999999999997766555578889999999999998876553 45788999999
Q ss_pred eeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1046 LDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1046 L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
|++.+|++..+.... ..+++|+.|||.+|.+...-|. .|..+ .|++|.+..
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n-AFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN-AFEPM-ELKELVMNS 448 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeeccc-ccccc-hhhhhhhcc
Confidence 999999876533333 7899999999999999865555 89988 999998854
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=5.6e-28 Score=272.26 Aligned_cols=220 Identities=20% Similarity=0.182 Sum_probs=146.5
Q ss_pred CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCC-CCC-CccEEEeccccCccccccccCCCCccC
Q 045303 967 DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGL-PST-KLTELTIWDCENLKALPNCMHNLTSLL 1044 (1206)
Q Consensus 967 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~ 1044 (1206)
...+|+.|...+|.. ..+|....++++|++|+|..|++ ..+|..+. -.. +|..|+.+.|.+.......=..++.|+
T Consensus 285 ~~~~L~~l~~~~nel-~yip~~le~~~sL~tLdL~~N~L-~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq 362 (1081)
T KOG0618|consen 285 RITSLVSLSAAYNEL-EYIPPFLEGLKSLRTLDLQSNNL-PSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQ 362 (1081)
T ss_pred hhhhHHHHHhhhhhh-hhCCCcccccceeeeeeehhccc-cccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHH
Confidence 346666666666654 34555566678888888888744 34444322 222 366666666655443222223567788
Q ss_pred eeeeecCCCCccC-CCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCC
Q 045303 1045 DLDIRGCPSVVSF-PEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPD 1123 (1206)
Q Consensus 1045 ~L~L~~n~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~ 1123 (1206)
.|++.+|.+.... |....+.+|+.|+|++|++. .+|...+.++..|+.|+||| |.++.+|.....+..|+.+.+..
T Consensus 363 ~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSG--NkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 363 ELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSG--NKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhccc--chhhhhhHHHHhhhhhHHHhhcC
Confidence 8999999887654 44477889999999999886 67877888899999999987 78888888777777777666665
Q ss_pred Ccccc-CCCCCcCcccccccccCCCCCCCCC-CCCc-cccceecccCChhhHHhhccCCCCCCCcccccCeeEECcc
Q 045303 1124 LECLS-SIGENLTSLKYLYLIDCPKLKYFPE-QGLP-KSLLQLHIKGCPLIEERCRKDEGKYWPMISHIPCVEINFR 1197 (1206)
Q Consensus 1124 ~~~~~-~~~~~l~~L~~L~l~~n~~l~~l~~-~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1197 (1206)
|.+.. .....+++|+.+|++.| .++.+.. ...| ++|++||++||+.+. -+.+..+..+++..++|+.+
T Consensus 440 N~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~-----~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 440 NQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLV-----FDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CceeechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcccc-----cchhhhHHhhhhhheecccC
Confidence 55432 13357899999999977 5665442 3456 899999999998521 12233445555555555544
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=6.7e-27 Score=238.29 Aligned_cols=230 Identities=24% Similarity=0.257 Sum_probs=182.3
Q ss_pred HHHHHhccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCC
Q 045303 491 VLKMLLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNL 570 (1206)
Q Consensus 491 ~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L 570 (1206)
.++..+..+..+..|+.++| .+..+|+.++.+..|+.|+.++|.+..+|++++.+-.|+.|+..+| .+..+|+++..+
T Consensus 82 ~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~ 159 (565)
T KOG0472|consen 82 QLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNL 159 (565)
T ss_pred hCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHH
Confidence 34556788889999999999 9999999999999999999999999999999999999999999999 899999999999
Q ss_pred CccceeecCCCCccccCCcccCCcCccccCCceEeCCCC-CCCcccccCcccCCceeEEecccCCCCcccccccccCCCC
Q 045303 571 TKLRHLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDS-GSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKV 649 (1206)
Q Consensus 571 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~-~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~ 649 (1206)
.+|..|++.+|. ++.+|...-+++.|++|+...+.-.. +..++.+.+|.-|. +..+ .+ .....|.+++
T Consensus 160 ~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~Ly-------L~~N-ki--~~lPef~gcs 228 (565)
T KOG0472|consen 160 SKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLY-------LRRN-KI--RFLPEFPGCS 228 (565)
T ss_pred HHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHH-------hhhc-cc--ccCCCCCccH
Confidence 999999999999 88888876669999999765543222 33344444443221 1111 11 1122577788
Q ss_pred CCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC-CCCCCCCC
Q 045303 650 NLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP-SVGQLPFL 728 (1206)
Q Consensus 650 ~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L 728 (1206)
.|.+|+++.|.+... ..+..+.++++..|++..|+++++|..+. .+.+|++|++++|.++.+| .+|++ .|
T Consensus 229 ~L~Elh~g~N~i~~l------pae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL 299 (565)
T KOG0472|consen 229 LLKELHVGENQIEML------PAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HL 299 (565)
T ss_pred HHHHHHhcccHHHhh------HHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-ee
Confidence 888888887764322 12234567899999999999999999886 6889999999999998887 69999 99
Q ss_pred ceeeecCCCCceee
Q 045303 729 KELDISGMDGVVSV 742 (1206)
Q Consensus 729 ~~L~L~~~~~~~~~ 742 (1206)
+.|.+.||+.-++-
T Consensus 300 ~~L~leGNPlrTiR 313 (565)
T KOG0472|consen 300 KFLALEGNPLRTIR 313 (565)
T ss_pred eehhhcCCchHHHH
Confidence 99999999865544
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=4.1e-26 Score=257.31 Aligned_cols=321 Identities=24% Similarity=0.218 Sum_probs=185.8
Q ss_pred ccEEEEcccCC-CCCC-CCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccc
Q 045303 706 LARLELRLCMS-TSLP-SVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDE 783 (1206)
Q Consensus 706 L~~L~L~~~~~-~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 783 (1206)
++.+++..|.+ ..+. .+..+.. .|+|++|... .... . .+++|+.+....+.. ..+. -
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dl--s------~~~~l~~l~c~rn~l-s~l~---------~ 216 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDL--S------NLANLEVLHCERNQL-SELE---------I 216 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhh--h------hccchhhhhhhhccc-ceEE---------e
Confidence 56666666666 3333 4555544 6899888755 2111 1 156666666554332 1111 1
Q ss_pred cCCcccEEeeccCcccccCCC-CCCCCccEEEEeccc--CccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCC
Q 045303 784 VFPKLRKLSLRHCDKLQGTLP-RRLLLLETLDITSCH--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNS 860 (1206)
Q Consensus 784 ~~~~L~~L~l~~c~~l~~~lp-~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 860 (1206)
.-++|+.|+.++|. ++...+ ....+|++++++.+. .++..+..+.+|+.++..+|.+..+... ...
T Consensus 217 ~g~~l~~L~a~~n~-l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r----------i~~ 285 (1081)
T KOG0618|consen 217 SGPSLTALYADHNP-LTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLR----------ISR 285 (1081)
T ss_pred cCcchheeeeccCc-ceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHH----------Hhh
Confidence 24788888888854 332333 234568888888877 5666677788888888888765433211 122
Q ss_pred CCCcceeeeccCCChhhhcccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCcccccc
Q 045303 861 STSLESLAIGRCDSLTYIARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTR 940 (1206)
Q Consensus 861 ~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~ 940 (1206)
..+|+.|.+..|..-...+......+|+.|++..+. +..++ . ..+..+
T Consensus 286 ~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp-------------------~----------~~l~v~-- 333 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLP-------------------D----------NFLAVL-- 333 (1081)
T ss_pred hhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccc-------------------h----------HHHhhh--
Confidence 355666666665432222223335666666665543 11110 0 000000
Q ss_pred CCCCccccceEEecccCCcccchhh--cCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCC
Q 045303 941 NGNLPQALKYLGVESCSKLESLAER--LDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTK 1018 (1206)
Q Consensus 941 ~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 1018 (1206)
..++..++.+.+ .+...+.. .....|+.|++.+|.+....-..+.++++|+.|+|+||.+.......+.++..
T Consensus 334 ----~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 334 ----NASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred ----hHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 012222222222 22222221 12366788888888877766666778888888888888443333334666778
Q ss_pred ccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCC-CCccCCCCCCCcceEEee
Q 045303 1019 LTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKP-LPEWGFNRFTSLRRFTIC 1097 (1206)
Q Consensus 1019 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~ls 1097 (1206)
|++|+||+|++. .+|..+.+++.|++|...+|.+.. +|....++.|+.+|+|.|.++.. +|. ... -++|++||++
T Consensus 409 LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fPe~~~l~qL~~lDlS~N~L~~~~l~~-~~p-~p~LkyLdlS 484 (1081)
T KOG0618|consen 409 LEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FPELAQLPQLKVLDLSCNNLSEVTLPE-ALP-SPNLKYLDLS 484 (1081)
T ss_pred hHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-chhhhhcCcceEEecccchhhhhhhhh-hCC-Ccccceeecc
Confidence 888888888765 466777888888888888887654 66667788888888888887733 232 221 2678888887
Q ss_pred cC
Q 045303 1098 GG 1099 (1206)
Q Consensus 1098 ~~ 1099 (1206)
||
T Consensus 485 GN 486 (1081)
T KOG0618|consen 485 GN 486 (1081)
T ss_pred CC
Confidence 73
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=1.1e-25 Score=241.18 Aligned_cols=365 Identities=22% Similarity=0.294 Sum_probs=239.5
Q ss_pred cCCceeEEEecCCCCc-ccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCcccee
Q 045303 498 HLPRLRVFSLCGYSNI-FSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 576 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L 576 (1206)
-++-+|-.|+++|..- ..+|.+...|++++.|.|..+.+..+|+.++.|.+|++|.+++| .+..+-..+..|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhhHHH
Confidence 3566777888888433 46788888888999999988888888988888999999999888 666666778888888888
Q ss_pred ecCCCCc-cccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceE
Q 045303 577 RNSNADE-LEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALS 655 (1206)
Q Consensus 577 ~l~~n~~-~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 655 (1206)
.+.+|+. ...+|.+|.+|..|..| +
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~l------------------------------------------------------D 109 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTIL------------------------------------------------------D 109 (1255)
T ss_pred hhhccccccCCCCchhcccccceee------------------------------------------------------e
Confidence 8888772 13456555555544444 4
Q ss_pred EeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC-CCCCCCCCceeeec
Q 045303 656 LEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP-SVGQLPFLKELDIS 734 (1206)
Q Consensus 656 l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~ 734 (1206)
|+.|.+.. .+..+....++-.|++++|++..+|..++ ..+..|-.|+|++|.+..+| ....+.+|++|.|+
T Consensus 110 LShNqL~E-------vP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 110 LSHNQLRE-------VPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cchhhhhh-------cchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcC
Confidence 44443321 22233334567778888888888887776 36778888999999996666 57888889999998
Q ss_pred CCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCC---CCCCCcc
Q 045303 735 GMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLP---RRLLLLE 811 (1206)
Q Consensus 735 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l~~L~ 811 (1206)
+|+..... |+ ...+|++|+.|.+++.++--..+| +.+.+|.
T Consensus 182 ~NPL~hfQ---------------Lr---------------------QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~ 225 (1255)
T KOG0444|consen 182 NNPLNHFQ---------------LR---------------------QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLR 225 (1255)
T ss_pred CChhhHHH---------------Hh---------------------cCccchhhhhhhcccccchhhcCCCchhhhhhhh
Confidence 88743211 10 111245555566665333222455 2345555
Q ss_pred EEEEeccc--CccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCe
Q 045303 812 TLDITSCH--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKR 889 (1206)
Q Consensus 812 ~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 889 (1206)
.++++.|. ..|..+..+++|..|++++|++..+... .....+|++|+++.|
T Consensus 226 dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~----------~~~W~~lEtLNlSrN----------------- 278 (1255)
T KOG0444|consen 226 DVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT----------EGEWENLETLNLSRN----------------- 278 (1255)
T ss_pred hccccccCCCcchHHHhhhhhhheeccCcCceeeeecc----------HHHHhhhhhhccccc-----------------
Confidence 55555554 4444555666666666666654443211 000122233333222
Q ss_pred EEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchhh-cCC
Q 045303 890 LTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAER-LDN 968 (1206)
Q Consensus 890 L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~ 968 (1206)
. ++.+|.. ...
T Consensus 279 -------------------------------------------------------------------Q-Lt~LP~avcKL 290 (1255)
T KOG0444|consen 279 -------------------------------------------------------------------Q-LTVLPDAVCKL 290 (1255)
T ss_pred -------------------------------------------------------------------h-hccchHHHhhh
Confidence 1 1111111 112
Q ss_pred CCcceeeeccccCc-CcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeee
Q 045303 969 TSLEEITILNLENL-KSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLD 1047 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 1047 (1206)
+.|+.|...+|+.. ..+|++++.+..|+.+..++| .++.+|++++.|..|+.|.|+.|++. .+|+.+.-++.|+.||
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLD 368 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLD 368 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceee
Confidence 55566666666553 367888888999999999887 68888999999999999999888766 4788888899999999
Q ss_pred eecCCCCccCC
Q 045303 1048 IRGCPSVVSFP 1058 (1206)
Q Consensus 1048 L~~n~~~~~~~ 1058 (1206)
+..|+-.-..|
T Consensus 369 lreNpnLVMPP 379 (1255)
T KOG0444|consen 369 LRENPNLVMPP 379 (1255)
T ss_pred ccCCcCccCCC
Confidence 99988765444
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=4.6e-25 Score=236.41 Aligned_cols=368 Identities=21% Similarity=0.299 Sum_probs=239.3
Q ss_pred Cccccceeeccccccc--cccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCcccCCcCcccc
Q 045303 522 NLKHLRCLNLSRTRIQ--ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGFGKLTCLLT 599 (1206)
Q Consensus 522 ~l~~L~~L~Ls~n~i~--~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 599 (1206)
-|+-.|-.|+++|.++ .+|..+..++.++-|.|... .+..+|+.++.|.+|++|.+++|+ +..+...
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt-~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGE--------- 73 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRT-KLEQVPEELSRLQKLEHLSMAHNQ-LISVHGE--------- 73 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechh-hhhhChHHHHHHhhhhhhhhhhhh-hHhhhhh---------
Confidence 3455677889999988 78999999999999999888 889999999999999999999988 3333222
Q ss_pred CCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCC
Q 045303 600 LGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHR 679 (1206)
Q Consensus 600 L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~ 679 (1206)
+..++.|+.+.++.|.+.
T Consensus 74 ---------------------------------------------Ls~Lp~LRsv~~R~N~LK----------------- 91 (1255)
T KOG0444|consen 74 ---------------------------------------------LSDLPRLRSVIVRDNNLK----------------- 91 (1255)
T ss_pred ---------------------------------------------hccchhhHHHhhhccccc-----------------
Confidence 222333444444433321
Q ss_pred CccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC-CCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCc
Q 045303 680 DVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP-SVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSL 758 (1206)
Q Consensus 680 ~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L 758 (1206)
...+|..++ .+..|+.|+|++|.+...| .+....++-.|+|++|++-++....|.
T Consensus 92 -----------nsGiP~diF--~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfi----------- 147 (1255)
T KOG0444|consen 92 -----------NSGIPTDIF--RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFI----------- 147 (1255)
T ss_pred -----------cCCCCchhc--ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHH-----------
Confidence 125666666 5777888888888886555 577777778888887764433222211
Q ss_pred cEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCC---CCCCccEEEEecccCccccccCCCCcceEE
Q 045303 759 ETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPR---RLLLLETLDITSCHQLLVTIQCLPALSELQ 835 (1206)
Q Consensus 759 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 835 (1206)
.+..|-.|+|++ |++. .+|. .+..|++|.+++|+.....+..+|+++
T Consensus 148 -------------------------nLtDLLfLDLS~-NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt--- 197 (1255)
T KOG0444|consen 148 -------------------------NLTDLLFLDLSN-NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT--- 197 (1255)
T ss_pred -------------------------hhHhHhhhcccc-chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch---
Confidence 144566677777 7777 6663 445556666665554333333332221
Q ss_pred ecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCeEEEeccCCCcCCcCcccccccccCCC
Q 045303 836 IDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCT 915 (1206)
Q Consensus 836 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~ 915 (1206)
+|+.|++++.
T Consensus 198 ---------------------------sL~vLhms~T------------------------------------------- 207 (1255)
T KOG0444|consen 198 ---------------------------SLSVLHMSNT------------------------------------------- 207 (1255)
T ss_pred ---------------------------hhhhhhcccc-------------------------------------------
Confidence 2222222211
Q ss_pred CccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCcc
Q 045303 916 SLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHL 995 (1206)
Q Consensus 916 ~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 995 (1206)
.. ...++|++|..| .+|..++++.|+ +..+|..+..+++|
T Consensus 208 -----------------qR-----Tl~N~Ptsld~l-----------------~NL~dvDlS~N~-Lp~vPecly~l~~L 247 (1255)
T KOG0444|consen 208 -----------------QR-----TLDNIPTSLDDL-----------------HNLRDVDLSENN-LPIVPECLYKLRNL 247 (1255)
T ss_pred -----------------cc-----hhhcCCCchhhh-----------------hhhhhccccccC-CCcchHHHhhhhhh
Confidence 00 012334444333 556666666654 35667788888888
Q ss_pred ceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCc-cCCCC-CCCCCcCeEEEeC
Q 045303 996 QKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVV-SFPED-GFPTNLQSLEVRG 1073 (1206)
Q Consensus 996 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~~~~-~~~~~L~~L~Ls~ 1073 (1206)
+.|+||+|.+.+ +........+|++|++|.|+++ .+|+.+..++.|+.|.+.+|++.- -+|.. +.+.+|+++..++
T Consensus 248 rrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan 325 (1255)
T KOG0444|consen 248 RRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN 325 (1255)
T ss_pred heeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc
Confidence 888888886543 3344455578888888888755 578888888888888888887631 23433 7788888888888
Q ss_pred cCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCC
Q 045303 1074 LKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPE 1153 (1206)
Q Consensus 1074 n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~ 1153 (1206)
|.+. ..|+ .+..|..|+.|.|+ ||.+..+|+.+ .-++.|+.||+..||.+.--|.
T Consensus 326 N~LE-lVPE-glcRC~kL~kL~L~--~NrLiTLPeaI---------------------HlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 326 NKLE-LVPE-GLCRCVKLQKLKLD--HNRLITLPEAI---------------------HLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccc-cCch-hhhhhHHHHHhccc--ccceeechhhh---------------------hhcCCcceeeccCCcCccCCCC
Confidence 8775 6776 68888888888883 67777777533 2467788888888988876664
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=2.9e-21 Score=248.61 Aligned_cols=111 Identities=30% Similarity=0.549 Sum_probs=62.5
Q ss_pred CCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEE
Q 045303 992 LHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEV 1071 (1206)
Q Consensus 992 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L 1071 (1206)
.++|+.|+|++|+....+|..+.++++|+.|+|++|...+.+|..+ ++++|+.|++++|.....+|. .+.+|+.|+|
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~L 853 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNL 853 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeEC
Confidence 3455666666665555555555556666666666655555555444 455666666666655444443 2345666666
Q ss_pred eCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCC
Q 045303 1072 RGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP 1108 (1206)
Q Consensus 1072 s~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~ 1108 (1206)
++|.+. .+|. .+..+++|+.|++++ |+++..+|.
T Consensus 854 s~n~i~-~iP~-si~~l~~L~~L~L~~-C~~L~~l~~ 887 (1153)
T PLN03210 854 SRTGIE-EVPW-WIEKFSNLSFLDMNG-CNNLQRVSL 887 (1153)
T ss_pred CCCCCc-cChH-HHhcCCCCCEEECCC-CCCcCccCc
Confidence 666654 3444 355566666666654 566655554
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=4.6e-17 Score=167.10 Aligned_cols=53 Identities=15% Similarity=-0.038 Sum_probs=35.0
Q ss_pred cceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccc
Q 045303 971 LEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDC 1027 (1206)
Q Consensus 971 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1027 (1206)
..++++.+|.+. .+|.. .+.+| .+++++|++...-...|.++++|.+|-|+.|
T Consensus 446 ~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 446 VTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 344555555442 34443 45677 7888888776655567788888888888765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=6.7e-15 Score=174.38 Aligned_cols=256 Identities=20% Similarity=0.134 Sum_probs=163.8
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecC
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNS 579 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 579 (1206)
..-.+|+|+++ .+..+|..+. .+|+.|++++|+|+.+|.. +++|++|++++| .+..+|.. .++|+.|+++
T Consensus 201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeecc
Confidence 45678999999 8889998776 5899999999999999863 689999999999 77778753 4688999999
Q ss_pred CCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeec
Q 045303 580 NADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWS 659 (1206)
Q Consensus 580 ~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 659 (1206)
+|. +..+|... ++|+.|++..+. + ..+ + ...++|+.|++++|
T Consensus 271 ~N~-L~~Lp~lp---~~L~~L~Ls~N~------L------t~L-------------------P---~~p~~L~~LdLS~N 312 (788)
T PRK15387 271 SNP-LTHLPALP---SGLCKLWIFGNQ------L------TSL-------------------P---VLPPGLQELSVSDN 312 (788)
T ss_pred CCc-hhhhhhch---hhcCEEECcCCc------c------ccc-------------------c---ccccccceeECCCC
Confidence 998 66666533 233344222111 0 000 0 01246778888877
Q ss_pred CCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCCCc
Q 045303 660 ARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMDGV 739 (1206)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~~ 739 (1206)
.+...+. .+.+|+.|++++|.+..+|.. ..+|+.|+|++|.+..+|.+ .++|+.|++++|...
T Consensus 313 ~L~~Lp~----------lp~~L~~L~Ls~N~L~~LP~l-----p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~ 375 (788)
T PRK15387 313 QLASLPA----------LPSELCKLWAYNNQLTSLPTL-----PSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLT 375 (788)
T ss_pred ccccCCC----------CcccccccccccCcccccccc-----ccccceEecCCCccCCCCCC--Ccccceehhhccccc
Confidence 6653221 134577777777777777642 24677888888887666653 356777777776543
Q ss_pred eeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCCCCCccEEEEeccc
Q 045303 740 VSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRLLLLETLDITSCH 819 (1206)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~ 819 (1206)
. ++. ..++|+.|++++|. +..+. ...++|+.|++++ |+++ .+|..+.+|+.|++++|.
T Consensus 376 ~-LP~---------l~~~L~~LdLs~N~-Lt~LP---------~l~s~L~~LdLS~-N~Ls-sIP~l~~~L~~L~Ls~Nq 433 (788)
T PRK15387 376 S-LPA---------LPSGLKELIVSGNR-LTSLP---------VLPSELKELMVSG-NRLT-SLPMLPSGLLSLSVYRNQ 433 (788)
T ss_pred c-Ccc---------cccccceEEecCCc-ccCCC---------CcccCCCEEEccC-CcCC-CCCcchhhhhhhhhccCc
Confidence 2 111 02456666666653 22211 1134677777777 5666 566555566667776665
Q ss_pred --CccccccCCCCcceEEecCCCcc
Q 045303 820 --QLLVTIQCLPALSELQIDGCKRV 842 (1206)
Q Consensus 820 --~~~~~~~~l~~L~~L~l~~~~~~ 842 (1206)
.+|..+..+++|+.|++++|++.
T Consensus 434 Lt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 434 LTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred ccccChHHhhccCCCeEECCCCCCC
Confidence 44555666666677777666543
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.56 E-value=2.9e-14 Score=169.07 Aligned_cols=52 Identities=29% Similarity=0.352 Sum_probs=30.9
Q ss_pred ccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCCC
Q 045303 681 VQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMDG 738 (1206)
Q Consensus 681 L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~ 738 (1206)
-..|+++++.+..+|..+. .+|+.|.+.+|.++.+|.+ +++|++|++++|..
T Consensus 203 ~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L 254 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP----AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL 254 (788)
T ss_pred CcEEEcCCCCCCcCCcchh----cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc
Confidence 4455666666666666543 3566666666666655542 45666666666543
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.56 E-value=2.3e-13 Score=175.97 Aligned_cols=297 Identities=17% Similarity=0.196 Sum_probs=186.9
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcC-CCChHHH
Q 045303 85 LVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSD-DFDVPRV 163 (1206)
Q Consensus 85 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~ 163 (1206)
|...+.+|-|+.-.+.+.+ . ...+++.|+|++|.||||++.++... ++.++|+++.. ..++..+
T Consensus 10 p~~~~~~~~R~rl~~~l~~----~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f 74 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG----A-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERF 74 (903)
T ss_pred CCCccccCcchHHHHHHhc----c-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHH
Confidence 3445678888865555532 1 25689999999999999999998752 22689999864 4466677
Q ss_pred HHHHHHhccCCCCC-------------CCCHHHHHHHHHHHhC--CCceEEEEeCCCccCHhhHHhhhccCCC-CCCCcE
Q 045303 164 TKSILESIANVTVD-------------DNNLNSLQVKLKERLS--GKKFLLVLDDVWNENYIRWSELRCPFVA-GAAGSK 227 (1206)
Q Consensus 164 ~~~i~~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~~~~ 227 (1206)
...++..+...... ..+.......+...+. +++++||+||+...+......+...+.. ...+.+
T Consensus 75 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~ 154 (903)
T PRK04841 75 ASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLT 154 (903)
T ss_pred HHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeE
Confidence 77777766421111 0222333333333333 6799999999987653443333333333 346778
Q ss_pred EEEEccchH-H--HhhcCCCCceeCC----CCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHh
Q 045303 228 IVVTTRNLV-V--AERMRADPVYQLK----KLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGG 300 (1206)
Q Consensus 228 iliTtr~~~-~--~~~~~~~~~~~l~----~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 300 (1206)
+|||||... . ..........++. +|+.+|+.++|...... +-..+.+.+|++.|+|+|+++..++.
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~~~t~Gwp~~l~l~~~ 227 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLCDDVEGWATALQLIAL 227 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHHHHhCChHHHHHHHHH
Confidence 889999842 1 1111112244555 99999999999875421 11246678899999999999999987
Q ss_pred hhCCCCChhHHHHHHhhhccccCCCCchHHHHH-hhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCC
Q 045303 301 LLRGRDDPRDWEFVLKNDIWNLRDSDILPALRV-SYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSG 379 (1206)
Q Consensus 301 ~l~~~~~~~~w~~~~~~~~~~~~~~~v~~~l~~-s~~~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~ 379 (1206)
.+........ ..... ........+...+.. .++.||++.++++...|+++ . +..+. +..+.+.
T Consensus 228 ~~~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~--~~~~l------~~~l~~~---- 291 (903)
T PRK04841 228 SARQNNSSLH--DSARR-LAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-S--MNDAL------IVRVTGE---- 291 (903)
T ss_pred HHhhCCCchh--hhhHh-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-c--CCHHH------HHHHcCC----
Confidence 7754422100 00110 001112245555544 48999999999999999986 3 33222 1111111
Q ss_pred CCHHHHHHHHHHHHHhCCcccc-ccCCCCceeehHHHHHHHHHhh
Q 045303 380 RKMEDLGREFVRELHSRSLFQQ-SSKGASRFVMHDLINDLARWAA 423 (1206)
Q Consensus 380 ~~~~~~~~~~l~~L~~~~ll~~-~~~~~~~~~~H~lv~~~~~~~~ 423 (1206)
+.+.+.+++|.+.+++.. .+.+..+|+.|+++++++++..
T Consensus 292 ----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ----ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ----CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 124677999999999653 3334458999999999999875
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.49 E-value=1.9e-15 Score=155.32 Aligned_cols=325 Identities=16% Similarity=0.152 Sum_probs=192.9
Q ss_pred EEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC--CCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEe
Q 045303 685 TITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP--SVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLS 762 (1206)
Q Consensus 685 ~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 762 (1206)
+.++-+.+++|..+ .+.-+.+.|+.|.++.+| .|+.+++|+.|+|++|.+..+.+.+|.| +++|..|.
T Consensus 52 dCr~~GL~eVP~~L----P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~G------L~~l~~Lv 121 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL----PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKG------LASLLSLV 121 (498)
T ss_pred EccCCCcccCcccC----CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhh------hHhhhHHH
Confidence 44455666788765 357889999999998887 6999999999999999988888888877 66666666
Q ss_pred ccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCCCCCccEEEEecccCccccccCCCCcceEEecCCCcc
Q 045303 763 FSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRLLLLETLDITSCHQLLVTIQCLPALSELQIDGCKRV 842 (1206)
Q Consensus 763 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~ 842 (1206)
+.+++.++++.. +.++.+..|+.|.+.- +++. . .....|..++++..|.+-+|.+-
T Consensus 122 lyg~NkI~~l~k-----~~F~gL~slqrLllNa-n~i~-C-----------------ir~~al~dL~~l~lLslyDn~~q 177 (498)
T KOG4237|consen 122 LYGNNKITDLPK-----GAFGGLSSLQRLLLNA-NHIN-C-----------------IRQDALRDLPSLSLLSLYDNKIQ 177 (498)
T ss_pred hhcCCchhhhhh-----hHhhhHHHHHHHhcCh-hhhc-c-----------------hhHHHHHHhhhcchhcccchhhh
Confidence 655444443322 1222233344443333 2222 1 22234566666666666665533
Q ss_pred eecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCcccccc
Q 045303 843 VFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSA 922 (1206)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 922 (1206)
.+ ....+..+..++++++..++.+.. .+|+++.=..-.+.....+... .........
T Consensus 178 ~i---------~~~tf~~l~~i~tlhlA~np~icd-------CnL~wla~~~a~~~ietsgarc-------~~p~rl~~~ 234 (498)
T KOG4237|consen 178 SI---------CKGTFQGLAAIKTLHLAQNPFICD-------CNLPWLADDLAMNPIETSGARC-------VSPYRLYYK 234 (498)
T ss_pred hh---------ccccccchhccchHhhhcCccccc-------cccchhhhHHhhchhhccccee-------cchHHHHHH
Confidence 33 333445567777777777664322 2222221000000000000000 000000000
Q ss_pred ccceEEEe--ccCCccccccCCCCccccceEEecccCCcccchh--hcCCCCcceeeeccccCcCcccccccCCCcccee
Q 045303 923 TLEHLEVS--SCSNLAFLTRNGNLPQALKYLGVESCSKLESLAE--RLDNTSLEEITILNLENLKSLPAGLHNLHHLQKI 998 (1206)
Q Consensus 923 ~l~~L~l~--~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 998 (1206)
..+.++-. .|. ++.+ +..+ .+.|.....-|. +-..++|+.|++++|.+...-+.+|.+...+++|
T Consensus 235 Ri~q~~a~kf~c~-~esl------~s~~----~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 235 RINQEDARKFLCS-LESL------PSRL----SSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred Hhcccchhhhhhh-HHhH------HHhh----ccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 00111000 000 0000 0000 111111111111 2234899999999999999999999999999999
Q ss_pred eccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCcc-----------------CCCCC
Q 045303 999 WIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVS-----------------FPEDG 1061 (1206)
Q Consensus 999 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~~ 1061 (1206)
.|..|++-..-...|.++..|+.|+|.+|+++..-|..|..+.+|.+|+|-.|++... .|.-.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ 383 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence 9999977666666788899999999999999999999999999999999998886531 11124
Q ss_pred CCCCcCeEEEeCcCCC
Q 045303 1062 FPTNLQSLEVRGLKIS 1077 (1206)
Q Consensus 1062 ~~~~L~~L~Ls~n~l~ 1077 (1206)
.+..++.+.++++.+.
T Consensus 384 ~p~~~~~~~~~dv~~~ 399 (498)
T KOG4237|consen 384 SPGFVRQIPISDVAFG 399 (498)
T ss_pred CCchhccccchhcccc
Confidence 5567778888776654
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.3e-13 Score=162.86 Aligned_cols=181 Identities=22% Similarity=0.247 Sum_probs=114.9
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecC
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNS 579 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 579 (1206)
.+..+|+++++ .+..+|..+. ++|+.|+|++|.|+.+|..+. .+|++|++++| .+..+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECc
Confidence 45788999998 8888997665 689999999999999998764 58999999998 6778887654 479999999
Q ss_pred CCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeec
Q 045303 580 NADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWS 659 (1206)
Q Consensus 580 ~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 659 (1206)
+|. +..+|..+. ++|+.|++..+. +..+ +..+. .+|+.|++++|
T Consensus 250 ~N~-L~~LP~~l~--s~L~~L~Ls~N~------------L~~L-------------------P~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 250 INR-ITELPERLP--SALQSLDLFHNK------------ISCL-------------------PENLP--EELRYLSVYDN 293 (754)
T ss_pred CCc-cCcCChhHh--CCCCEEECcCCc------------cCcc-------------------ccccC--CCCcEEECCCC
Confidence 998 667776553 345555332111 0000 00111 25666777666
Q ss_pred CCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCCC
Q 045303 660 ARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMDG 738 (1206)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~ 738 (1206)
.+...+. .+ +++|+.|++++|.+..+|..+ .++|+.|++++|.++.+|.- -.++|+.|++++|.+
T Consensus 294 ~Lt~LP~-------~l--p~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L 358 (754)
T PRK15370 294 SIRTLPA-------HL--PSGITHLNVQSNSLTALPETL----PPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQI 358 (754)
T ss_pred ccccCcc-------cc--hhhHHHHHhcCCccccCCccc----cccceeccccCCccccCChh-hcCcccEEECCCCCC
Confidence 6543221 01 135666666666666665443 24666666666666555521 124666666666553
No 21
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.44 E-value=4.8e-12 Score=144.67 Aligned_cols=300 Identities=19% Similarity=0.212 Sum_probs=194.1
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-CChHHH
Q 045303 85 LVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-FDVPRV 163 (1206)
Q Consensus 85 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~ 163 (1206)
|..+...|-|..-. +.|... ...|.+.|..++|.||||++.+.+. + ...-..+.|++++.. .++..+
T Consensus 15 P~~~~~~v~R~rL~----~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF 82 (894)
T COG2909 15 PVRPDNYVVRPRLL----DRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARF 82 (894)
T ss_pred CCCcccccccHHHH----HHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHH
Confidence 33455667776644 444332 3679999999999999999999975 2 223346899998765 578888
Q ss_pred HHHHHHhccCCCC-------------CCCCHHHHHHHHHHHhC--CCceEEEEeCCCccCHhhHHh-hhccCCCCCCCcE
Q 045303 164 TKSILESIANVTV-------------DDNNLNSLQVKLKERLS--GKKFLLVLDDVWNENYIRWSE-LRCPFVAGAAGSK 227 (1206)
Q Consensus 164 ~~~i~~~l~~~~~-------------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~-l~~~l~~~~~~~~ 227 (1206)
...++..++.-.+ ...+...+...+...+. .++..+||||..-........ +...+....++-.
T Consensus 83 ~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~ 162 (894)
T COG2909 83 LSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLT 162 (894)
T ss_pred HHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeE
Confidence 8888888763221 22344445555555554 468999999997655434333 2223334457889
Q ss_pred EEEEccchHHH---hhcCCCCceeCC----CCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHh
Q 045303 228 IVVTTRNLVVA---ERMRADPVYQLK----KLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGG 300 (1206)
Q Consensus 228 iliTtr~~~~~---~~~~~~~~~~l~----~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 300 (1206)
+|||||...-. +.--....+++. .|+.+|+.++|..... .+-....++.+.+..+|.+-|+..++-
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aL 235 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIAL 235 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHH
Confidence 99999985422 111112223332 4899999999987641 122346688999999999999999998
Q ss_pred hhCCCCChhHHHHHHhhhccccCCCCch-HHHHHhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCC
Q 045303 301 LLRGRDDPRDWEFVLKNDIWNLRDSDIL-PALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSG 379 (1206)
Q Consensus 301 ~l~~~~~~~~w~~~~~~~~~~~~~~~v~-~~l~~s~~~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~ 379 (1206)
.+++..+.+.-...+.. . ..-|. -....-++.||+++|..+..+|+++.= ...++.. +
T Consensus 236 a~~~~~~~~q~~~~LsG----~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~-----L------- 294 (894)
T COG2909 236 ALRNNTSAEQSLRGLSG----A-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNA-----L------- 294 (894)
T ss_pred HccCCCcHHHHhhhccc----h-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHH-----H-------
Confidence 88843332222111110 0 00111 133456799999999999999998541 1122221 1
Q ss_pred CCHHHHHHHHHHHHHhCCcc-ccccCCCCceeehHHHHHHHHHhhcc
Q 045303 380 RKMEDLGREFVRELHSRSLF-QQSSKGASRFVMHDLINDLARWAAGE 425 (1206)
Q Consensus 380 ~~~~~~~~~~l~~L~~~~ll-~~~~~~~~~~~~H~lv~~~~~~~~~~ 425 (1206)
+-++.+...+++|.+++|+ ++.++...+|+.|+++.+|.+.....
T Consensus 295 -tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 -TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 1123467789999999984 55555577999999999999977554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=4e-15 Score=134.44 Aligned_cols=101 Identities=28% Similarity=0.400 Sum_probs=84.8
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
.+.+++.|.|++| .++.+|..|..+.+|++|++++|+|+.+|.+++.+++|++|+++-| .+..+|.+|+.++.|+.||
T Consensus 31 ~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLD 108 (264)
T ss_pred chhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhh
Confidence 4567788889999 9999999999999999999999999999999999999999999998 8889999999999999999
Q ss_pred cCCCCcc-ccCCcccCCcCccccC
Q 045303 578 NSNADEL-EEMPKGFGKLTCLLTL 600 (1206)
Q Consensus 578 l~~n~~~-~~~p~~~~~l~~L~~L 600 (1206)
|.+|+.. ..+|..|..|+.|+-|
T Consensus 109 ltynnl~e~~lpgnff~m~tlral 132 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRAL 132 (264)
T ss_pred ccccccccccCCcchhHHHHHHHH
Confidence 9998833 2345445544444444
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.37 E-value=9.4e-11 Score=135.13 Aligned_cols=300 Identities=15% Similarity=0.039 Sum_probs=175.7
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 86 VTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 86 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
..++.++||++++++|...+...-. ......+.|+|++|+|||++++.++++.......-..+++.+....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 3567899999999999999865321 23445678999999999999999998532222123456666666667788999
Q ss_pred HHHHhccCCCC--CCCCHHHHHHHHHHHhC--CCceEEEEeCCCccC----HhhHHhhhccCCCC-CCCcEEEEEccchH
Q 045303 166 SILESIANVTV--DDNNLNSLQVKLKERLS--GKKFLLVLDDVWNEN----YIRWSELRCPFVAG-AAGSKIVVTTRNLV 236 (1206)
Q Consensus 166 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~l~~~-~~~~~iliTtr~~~ 236 (1206)
.++.++..... ...+.++....+.+.+. +++.+||||+++... ...+..+...+... ..+..+|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 99998865221 22345666677777764 456899999997642 12233332222211 11333566655543
Q ss_pred HHhhcC-------CCCceeCCCCChhhHHHHHHHhhhCCC-CCCCChhhHHHHHHHHHh----cCCcchHHHHHHhhh--
Q 045303 237 VAERMR-------ADPVYQLKKLSDDDCLCVLTQISLGAR-DFTRHQSLKEVGEQIVIK----CGGLPLAAKTLGGLL-- 302 (1206)
Q Consensus 237 ~~~~~~-------~~~~~~l~~l~~~e~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~----~~g~Plal~~~~~~l-- 302 (1206)
+..... ....+.+.+++.++..+++..++.... ....+ .++++.|++. .|..+.|+.++-...
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~---~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVD---DEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCC---HhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 222111 124678999999999999988763221 10112 2333344443 455777776654321
Q ss_pred C---CC--CChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCCCC--CcccCHHHHHHH--HHHcCCc
Q 045303 303 R---GR--DDPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFPK--DYEFQEEEIILL--WTAEGFL 373 (1206)
Q Consensus 303 ~---~~--~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp~--~~~~~~~~l~~~--w~~~g~~ 373 (1206)
+ +. -+.+....+.... -...+...+..||.+.|..+..++..-+ ...+....+... .+++.+-
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~--------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKS--------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 11 1234444444321 1234566789999999988877663321 123444444432 2222111
Q ss_pred ccccCCCCHHHHHHHHHHHHHhCCccccc
Q 045303 374 DQEYSGRKMEDLGREFVRELHSRSLFQQS 402 (1206)
Q Consensus 374 ~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 402 (1206)
. .........+++..|...|+|+..
T Consensus 334 ~----~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 334 Y----EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 0 011234466789999999998764
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=2.6e-12 Score=154.01 Aligned_cols=182 Identities=17% Similarity=0.228 Sum_probs=131.6
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecC
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNS 579 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 579 (1206)
+.|+.|+|++| .+..+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECc
Confidence 46888999998 8888887665 589999999999998887654 47899999998 6678887664 578999999
Q ss_pred CCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeec
Q 045303 580 NADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWS 659 (1206)
Q Consensus 580 ~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 659 (1206)
+|. +..+|..+. .+|+.|++..+. +..+. ..+ .++|+.|++++|
T Consensus 271 ~N~-L~~LP~~l~--~sL~~L~Ls~N~------------Lt~LP-------------------~~l--p~sL~~L~Ls~N 314 (754)
T PRK15370 271 HNK-ISCLPENLP--EELRYLSVYDNS------------IRTLP-------------------AHL--PSGITHLNVQSN 314 (754)
T ss_pred CCc-cCccccccC--CCCcEEECCCCc------------cccCc-------------------ccc--hhhHHHHHhcCC
Confidence 887 667887654 366666543321 00010 001 135788888888
Q ss_pred CCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCCCc
Q 045303 660 ARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMDGV 739 (1206)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~~ 739 (1206)
.+...+. . .+++|+.|++++|.+..+|..+ .++|+.|++++|.+..+|. .-.++|+.|+|++|...
T Consensus 315 ~Lt~LP~-------~--l~~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~Lt 380 (754)
T PRK15370 315 SLTALPE-------T--LPPGLKTLEAGENALTSLPASL----PPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNALT 380 (754)
T ss_pred ccccCCc-------c--ccccceeccccCCccccCChhh----cCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCcCC
Confidence 7654321 1 1368999999999999998765 3689999999999977763 11368999999887643
No 25
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=2e-13 Score=123.63 Aligned_cols=161 Identities=23% Similarity=0.279 Sum_probs=83.3
Q ss_pred hhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCcc
Q 045303 964 ERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSL 1043 (1206)
Q Consensus 964 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 1043 (1206)
..+...+.+.|.+++|+++ .+|..+..+.+|+.|++++| .++.+|..++.+++|+.|+++-|++. .+|.+|+.+|.|
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3333444455555554433 22333444555555555544 23344444455555555555444322 344455555555
Q ss_pred CeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCC
Q 045303 1044 LDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPD 1123 (1206)
Q Consensus 1044 ~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~ 1123 (1206)
+.|||.+|++.. ..+|. .|..++.|+.|+++. +..+.+|...+.|+.|++..+..
T Consensus 105 evldltynnl~e----------------------~~lpg-nff~m~tlralyl~d--ndfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 105 EVLDLTYNNLNE----------------------NSLPG-NFFYMTTLRALYLGD--NDFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred hhhhcccccccc----------------------ccCCc-chhHHHHHHHHHhcC--CCcccCChhhhhhcceeEEeecc
Confidence 555555544432 22333 445555555555543 44555555555555555555554
Q ss_pred Ccccc--CCCCCcCcccccccccCCCCCCCCC
Q 045303 1124 LECLS--SIGENLTSLKYLYLIDCPKLKYFPE 1153 (1206)
Q Consensus 1124 ~~~~~--~~~~~l~~L~~L~l~~n~~l~~l~~ 1153 (1206)
+.++. .....+++|++|++.+| .++.+|.
T Consensus 160 ndll~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 160 NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred CchhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 44332 12247889999999999 7887775
No 26
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.25 E-value=2.1e-10 Score=130.76 Aligned_cols=303 Identities=14% Similarity=0.088 Sum_probs=173.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccc-ccc---ceeEEEEEcCCCChHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHF---QIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-~~f---~~~~wv~~~~~~~~~~ 162 (1206)
.++.++||++++++|..++..... ......+.|+|++|+|||++++.++++.... ... -..+|+.+....+...
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 445799999999999999975321 2344678999999999999999998742111 110 2356777777677788
Q ss_pred HHHHHHHhcc---CCCC-CCCCHHHHHHHHHHHhC--CCceEEEEeCCCccC---HhhHHhhhccC-CCC--CCCcEEEE
Q 045303 163 VTKSILESIA---NVTV-DDNNLNSLQVKLKERLS--GKKFLLVLDDVWNEN---YIRWSELRCPF-VAG--AAGSKIVV 230 (1206)
Q Consensus 163 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~---~~~~~~l~~~l-~~~--~~~~~ili 230 (1206)
++..++.++. .... ...+..+....+.+.+. +++++||||+++... ......+.... ... .....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999998884 2111 12234455555666553 567899999997652 11122222110 111 13344555
Q ss_pred EccchHHHhhc----C---CCCceeCCCCChhhHHHHHHHhhhCC-CCCCCChhhHHHHHHHHHhcCCcch-HHHHHHhh
Q 045303 231 TTRNLVVAERM----R---ADPVYQLKKLSDDDCLCVLTQISLGA-RDFTRHQSLKEVGEQIVIKCGGLPL-AAKTLGGL 301 (1206)
Q Consensus 231 Ttr~~~~~~~~----~---~~~~~~l~~l~~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 301 (1206)
++........+ . ....+.+.+++.+|..+++..++... ......++..+.+.++++...|.|- |+..+-..
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a 250 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVA 250 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 55443221111 1 12468899999999999999886411 1112233333455667777778874 43332211
Q ss_pred h----C-CC--CChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCCC--CCcccCHHHHHHHHH--Hc
Q 045303 302 L----R-GR--DDPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFP--KDYEFQEEEIILLWT--AE 370 (1206)
Q Consensus 302 l----~-~~--~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp--~~~~~~~~~l~~~w~--~~ 370 (1206)
. . +. -..+....+.... -......++..||.+.+.++..++..- ++..+....+...+. ++
T Consensus 251 ~~~a~~~~~~~it~~~v~~a~~~~--------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 251 GEIAEREGAERVTEDHVEKAQEKI--------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 1 11 1223333332211 123455677899999887776665221 333455555555321 22
Q ss_pred CCcccccCCCCHHHHHHHHHHHHHhCCcccccc
Q 045303 371 GFLDQEYSGRKMEDLGREFVRELHSRSLFQQSS 403 (1206)
Q Consensus 371 g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 403 (1206)
.+ . ..........+++..|...|+|+...
T Consensus 323 ~~-~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 323 DI-G---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred hc-C---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11 1 11223456788899999999998754
No 27
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=1.6e-09 Score=117.85 Aligned_cols=182 Identities=19% Similarity=0.134 Sum_probs=115.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKER---- 191 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~---- 191 (1206)
.++++|+|++|+||||+++.++..... ..+ ...|+ +....+..+++..++..++.... ..+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~~~~~~~~~~l~~~l~~~ 118 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-GRDKAALLRELEDFLIEQ 118 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-CCCHHHHHHHHHHHHHHH
Confidence 458999999999999999999875331 111 12233 33345677888888888865432 23323333333322
Q ss_pred -hCCCceEEEEeCCCccCHhhHHhhhccC--C-CCCCCcEEEEEccchHHHhhcC----------CCCceeCCCCChhhH
Q 045303 192 -LSGKKFLLVLDDVWNENYIRWSELRCPF--V-AGAAGSKIVVTTRNLVVAERMR----------ADPVYQLKKLSDDDC 257 (1206)
Q Consensus 192 -l~~~~~LlvlDdv~~~~~~~~~~l~~~l--~-~~~~~~~iliTtr~~~~~~~~~----------~~~~~~l~~l~~~e~ 257 (1206)
..+++.++|+||++......++.+.... . .......|++|.... ....+. ....+.+++++.+|.
T Consensus 119 ~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~ 197 (269)
T TIGR03015 119 FAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREET 197 (269)
T ss_pred HhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHH
Confidence 2578899999999887755666554221 1 112333556665542 211111 123578999999999
Q ss_pred HHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhh
Q 045303 258 LCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL 302 (1206)
Q Consensus 258 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 302 (1206)
.+++...+...+......-..+..+.|++.++|.|..|+.++..+
T Consensus 198 ~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 198 REYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999987765433211222345789999999999999999888765
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.17 E-value=5.1e-10 Score=123.80 Aligned_cols=276 Identities=15% Similarity=0.145 Sum_probs=146.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
.+|||+++.+++|..++..... .......+.++|++|+|||+||+.+++.. ...+. .+........ ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~~---~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNLK---ITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCEE---EeccchhcCc-hhHHHHH
Confidence 4799999999999998864322 12345568899999999999999998742 22221 1111111111 1122222
Q ss_pred HhccCCCC------CCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHhhc-
Q 045303 169 ESIANVTV------DDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERM- 241 (1206)
Q Consensus 169 ~~l~~~~~------~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~~- 241 (1206)
..+..... +... ....+.+...+.+.+..+|+|+........ ....+.+-|..|++...+...+
T Consensus 77 ~~~~~~~vl~iDEi~~l~-~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLS-PAVEELLYPAMEDFRLDIVIGKGPSARSVR--------LDLPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HhcccCCEEEEehHhhhC-HHHHHHhhHHHhhhheeeeeccCcccccee--------ecCCCeEEEEecCCccccCHHHH
Confidence 22221110 0000 112233444444444555555543322111 0111345566677764433221
Q ss_pred -CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCChhHHHHHHhhhcc
Q 045303 242 -RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKNDIW 320 (1206)
Q Consensus 242 -~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~ 320 (1206)
+....+.+++++.+|..+++.+.+..... .-.++.+..|++.|+|.|-.+..++..+ |.........
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~ 215 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQK 215 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCC
Confidence 12346789999999999999987753221 2234677889999999997665444332 1111000000
Q ss_pred ccCCC---CchHHHHHhhcCCChhHHHHHh-hhcCCCCCcccCHHHHHHHHHHcCCcccccCCCCHHHHHHHHHH-HHHh
Q 045303 321 NLRDS---DILPALRVSYHFLPPQLKQCFA-YCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMEDLGREFVR-ELHS 395 (1206)
Q Consensus 321 ~~~~~---~v~~~l~~s~~~L~~~~k~~~~-~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~ 395 (1206)
....+ .....+...|..++...+..+. .++.++.+ .+..+.+.... | . ....++..++ .|++
T Consensus 216 ~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---~------~~~~~~~~~e~~Li~ 282 (305)
T TIGR00635 216 IINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---E------DADTIEDVYEPYLLQ 282 (305)
T ss_pred CcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---C------CcchHHHhhhHHHHH
Confidence 00000 1122245567888988888777 44666544 34443333221 1 1 1234666688 6999
Q ss_pred CCccccccCC
Q 045303 396 RSLFQQSSKG 405 (1206)
Q Consensus 396 ~~ll~~~~~~ 405 (1206)
++||+....|
T Consensus 283 ~~li~~~~~g 292 (305)
T TIGR00635 283 IGFLQRTPRG 292 (305)
T ss_pred cCCcccCCch
Confidence 9999765543
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.17 E-value=2.3e-10 Score=122.14 Aligned_cols=195 Identities=25% Similarity=0.230 Sum_probs=99.7
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH---
Q 045303 91 VYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI--- 167 (1206)
Q Consensus 91 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i--- 167 (1206)
|+||++++++|.+++... ..+.++|+|+.|+|||+|++++.+. .+..-..++|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~--~~~~~~~~~y~~~~~~~~-~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINE--LKEKGYKVVYIDFLEESN-ESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHH--CT--EECCCHHCCTTBSH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHH--hhhcCCcEEEEecccchh-hhHHHHHHHH
Confidence 799999999999999653 2468999999999999999999873 322212344444433322 2222222
Q ss_pred -----------HHhccCCCC------CCCCHHHHHHHHHHHhC--CCceEEEEeCCCccC------HhhHHhhhccCCC-
Q 045303 168 -----------LESIANVTV------DDNNLNSLQVKLKERLS--GKKFLLVLDDVWNEN------YIRWSELRCPFVA- 221 (1206)
Q Consensus 168 -----------~~~l~~~~~------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~l~~~l~~- 221 (1206)
...+..... ...........+.+.+. +++++||+||++... ..-...+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 111111100 01111222233333332 345999999997654 1111122222211
Q ss_pred -CCCCcEEEEEccchHHHhh--------cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 222 -GAAGSKIVVTTRNLVVAER--------MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 222 -~~~~~~iliTtr~~~~~~~--------~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
......+|+++....+... ......+.+++|+.+++++++...+... ... +...+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 1234444455444433322 2233459999999999999999865332 111 224567799999999999
Q ss_pred hHHHH
Q 045303 293 LAAKT 297 (1206)
Q Consensus 293 lal~~ 297 (1206)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.16 E-value=4.8e-10 Score=124.44 Aligned_cols=279 Identities=17% Similarity=0.162 Sum_probs=146.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
...+|+||++.++.+..++..... .....+.+.|+|++|+|||++|+.+++.. ...+ .++. .........+..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~-~~~~~~~~~l~~ 95 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITS-GPALEKPGDLAA 95 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEe-cccccChHHHHH
Confidence 346799999999999888864321 12345678899999999999999998742 2211 1111 111111122222
Q ss_pred HHHhccCCCC---CC-CC-HHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHhhc
Q 045303 167 ILESIANVTV---DD-NN-LNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERM 241 (1206)
Q Consensus 167 i~~~l~~~~~---~~-~~-~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~~ 241 (1206)
++..+..... ++ .. .....+.+...+.+.+..+++|+..+..... ..+ .+.+-|..|++...+...+
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~-----~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIR-----LDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccccee-----ecC---CCceEEeecCCcccCCHHH
Confidence 2222211100 00 00 0111122233333333344444332221100 001 1245566666654333221
Q ss_pred --CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCChhHHHHHHhhhc
Q 045303 242 --RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKNDI 319 (1206)
Q Consensus 242 --~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~ 319 (1206)
+....++++++++++..+++.+.+...+. ...++.+..|++.|+|.|-.+..+...+. .|..... .
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~--~ 235 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARILGV----EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVKG--D 235 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcC--C
Confidence 12246899999999999999987754322 22346789999999999965544443321 1111110 0
Q ss_pred cccCCC---CchHHHHHhhcCCChhHHHHHh-hhcCCCCCcccCHHHHHHHHHHcCCcccccCCCCHHHHHHHHHH-HHH
Q 045303 320 WNLRDS---DILPALRVSYHFLPPQLKQCFA-YCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMEDLGREFVR-ELH 394 (1206)
Q Consensus 320 ~~~~~~---~v~~~l~~s~~~L~~~~k~~~~-~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~ 394 (1206)
...... .....+...+..|++..+..+. .+..|+.+ .+..+.+.... .. . .+.+++.++ .|+
T Consensus 236 ~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~--~----~~~~~~~~e~~Li 302 (328)
T PRK00080 236 GVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE--E----RDTIEDVYEPYLI 302 (328)
T ss_pred CCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC--C----cchHHHHhhHHHH
Confidence 011111 2223445567889988888886 66677665 45544443221 11 1 123455566 899
Q ss_pred hCCccccccCC
Q 045303 395 SRSLFQQSSKG 405 (1206)
Q Consensus 395 ~~~ll~~~~~~ 405 (1206)
+.+|++....|
T Consensus 303 ~~~li~~~~~g 313 (328)
T PRK00080 303 QQGFIQRTPRG 313 (328)
T ss_pred HcCCcccCCch
Confidence 99999865544
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=5.1e-11 Score=145.30 Aligned_cols=106 Identities=30% Similarity=0.370 Sum_probs=84.7
Q ss_pred cCCceeEEEecCCCC-cccCC-ccccCccccceeeccccc-cccccccccccccccEEecCCCcccccccccccCCCccc
Q 045303 498 HLPRLRVFSLCGYSN-IFSLP-NEIGNLKHLRCLNLSRTR-IQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 574 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~-~~~lp-~~~~~l~~L~~L~Ls~n~-i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~ 574 (1206)
.++.|++|-+.+|.. +..++ ..|..|+.|++|||++|. +..+|++++.|.+||+|+++++ .+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 455789999988842 55565 457889999999999765 6689999999999999999998 7889999999999999
Q ss_pred eeecCCCCccccCCcccCCcCccccCCceE
Q 045303 575 HLRNSNADELEEMPKGFGKLTCLLTLGRFV 604 (1206)
Q Consensus 575 ~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~ 604 (1206)
+|++..+.....+|..+..|++|++|.++.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeec
Confidence 999988875556655566688888886544
No 32
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.07 E-value=7.8e-09 Score=119.60 Aligned_cols=306 Identities=14% Similarity=0.100 Sum_probs=161.1
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc---ccccc--eeEEEEEcCCCChH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV---QRHFQ--IKGWTCVSDDFDVP 161 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~---~~~f~--~~~wv~~~~~~~~~ 161 (1206)
.|+.+.|||+|+++|...|...-. +.+...++.|+|++|+|||++++.|.+.... ..... .++++.+....+..
T Consensus 753 VPD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 356799999999999999876432 1223467889999999999999999864211 11111 35667776667788
Q ss_pred HHHHHHHHhccCCCC-CCCCHHHHHHHHHHHhC---CCceEEEEeCCCccCHhhHHhhhccCC-CCCCCcEEEE--Eccc
Q 045303 162 RVTKSILESIANVTV-DDNNLNSLQVKLKERLS---GKKFLLVLDDVWNENYIRWSELRCPFV-AGAAGSKIVV--TTRN 234 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~~~~~~~l~~~l~-~~~~~~~ili--Ttr~ 234 (1206)
.++..|.+++..... ...........+...+. +...+||||+++......-+.+...+. ....+++|+| ++..
T Consensus 832 sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNd 911 (1164)
T PTZ00112 832 AAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNT 911 (1164)
T ss_pred HHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCc
Confidence 888888888844332 22233344455555442 234589999997543111111211111 1123444443 3332
Q ss_pred hHH----HhhcC---CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCC
Q 045303 235 LVV----AERMR---ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDD 307 (1206)
Q Consensus 235 ~~~----~~~~~---~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 307 (1206)
... ...+. ....+...|++.+|-.+++..++......-.+...+-.|+.+++..|-.-.||.++-.....+..
T Consensus 912 lDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 912 MDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 111 11111 12346779999999999999988543221222223333333333444555666655444322111
Q ss_pred ----hhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCC-C--CCcccCHHHHHHHH--HHcCCcccccC
Q 045303 308 ----PRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLF-P--KDYEFQEEEIILLW--TAEGFLDQEYS 378 (1206)
Q Consensus 308 ----~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~f-p--~~~~~~~~~l~~~w--~~~g~~~~~~~ 378 (1206)
.+.-..+... + ....+......||.+.|-++..+... - ....++...+.... +++..-.....
T Consensus 992 skVT~eHVrkAlee----i----E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~iGv 1063 (1164)
T PTZ00112 992 QKIVPRDITEATNQ----L----FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYIGM 1063 (1164)
T ss_pred CccCHHHHHHHHHH----H----HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhcCC
Confidence 1111111111 1 11223445578999988776644422 1 12234444443321 22200000011
Q ss_pred CCCHHHHHHHHHHHHHhCCccccc
Q 045303 379 GRKMEDLGREFVRELHSRSLFQQS 402 (1206)
Q Consensus 379 ~~~~~~~~~~~l~~L~~~~ll~~~ 402 (1206)
....+ ...+++.+|...|+|-..
T Consensus 1064 ~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1064 CSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred CCcHH-HHHHHHHHHHhcCeEEec
Confidence 12223 677788888888887553
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.05 E-value=4.9e-09 Score=128.92 Aligned_cols=310 Identities=13% Similarity=0.126 Sum_probs=180.6
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccc---cceeEEEEEcCCCC---hHHH
Q 045303 90 KVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH---FQIKGWTCVSDDFD---VPRV 163 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~---f~~~~wv~~~~~~~---~~~~ 163 (1206)
.++||+.+++.|...+.+.. .+...++.|.|.+|||||+++++|... +... |-...+-....... ..+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~--i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKP--ITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHH--HhccceeeeHhhcccccCCCchHHHHHH
Confidence 37999999999999998764 356679999999999999999999873 3322 21111111222222 2233
Q ss_pred HHHHHHhccCC-------------------CC----------------------CCCCHHH-----HHHHHHHHh-CCCc
Q 045303 164 TKSILESIANV-------------------TV----------------------DDNNLNS-----LQVKLKERL-SGKK 196 (1206)
Q Consensus 164 ~~~i~~~l~~~-------------------~~----------------------~~~~~~~-----~~~~l~~~l-~~~~ 196 (1206)
++++..++... .. .+..... ....+.... +.++
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 33333333110 00 0000111 111222333 3569
Q ss_pred eEEEEeCCCccCHhhHHhhhccCCCC------CCCcEEEEEccch--HHHhhcCCCCceeCCCCChhhHHHHHHHhhhCC
Q 045303 197 FLLVLDDVWNENYIRWSELRCPFVAG------AAGSKIVVTTRNL--VVAERMRADPVYQLKKLSDDDCLCVLTQISLGA 268 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~l~~~l~~~------~~~~~iliTtr~~--~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~ 268 (1206)
.++|+||+.+.+.....-+....... ....-.+.|.+.. .+.........+.|.||+..+...+........
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~ 235 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT 235 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc
Confidence 99999999877655444322111111 1122233333332 222233344689999999999999998876332
Q ss_pred CCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCC------CChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhH
Q 045303 269 RDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGR------DDPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQL 342 (1206)
Q Consensus 269 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~ 342 (1206)
.....+..+.|+++..|+|+.+..+-..+... .+...|..-......-...+.+...+..-.+.||...
T Consensus 236 -----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 236 -----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred -----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHH
Confidence 22335678899999999999999998888654 2233333322111000001134556888999999999
Q ss_pred HHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCCCCHHHHHHHHHHHHHhCCccccc-----cCCCC---ceeehHH
Q 045303 343 KQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMEDLGREFVRELHSRSLFQQS-----SKGAS---RFVMHDL 414 (1206)
Q Consensus 343 k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~~~~---~~~~H~l 414 (1206)
|+.+...|++...|+ ...+...|-. ...+++....+.|....++... ..... +-..|+.
T Consensus 311 ~~Vl~~AA~iG~~F~--l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 311 REVLKAAACIGNRFD--LDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHhCccCC--HHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 999999999976555 4444443311 2245566667777766665422 11111 2257999
Q ss_pred HHHHHHHh
Q 045303 415 INDLARWA 422 (1206)
Q Consensus 415 v~~~~~~~ 422 (1206)
+++.|-..
T Consensus 378 vqqaaY~~ 385 (849)
T COG3899 378 VQQAAYNL 385 (849)
T ss_pred HHHHHhcc
Confidence 99887643
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.01 E-value=8e-11 Score=132.32 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=17.9
Q ss_pred hccCCceeEEEecCCCCc-----ccCCccccCccccceeecccccc
Q 045303 496 LNHLPRLRVFSLCGYSNI-----FSLPNEIGNLKHLRCLNLSRTRI 536 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~-----~~lp~~~~~l~~L~~L~Ls~n~i 536 (1206)
|..+..|++|++++| .+ ..++..+...+.|++|+++++.+
T Consensus 19 ~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 19 LPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred HHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 344444555555555 22 12333334444455555554443
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.94 E-value=4.1e-11 Score=134.63 Aligned_cols=36 Identities=25% Similarity=0.054 Sum_probs=18.4
Q ss_pred CcCcccccccccCCCCCCCCCC------CCc-cccceecccCCh
Q 045303 1133 NLTSLKYLYLIDCPKLKYFPEQ------GLP-KSLLQLHIKGCP 1169 (1206)
Q Consensus 1133 ~l~~L~~L~l~~n~~l~~l~~~------~~~-~~L~~L~l~~c~ 1169 (1206)
.+++|+.+++++|. ++.-+.. .-. +.|+.|++.++|
T Consensus 276 ~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 276 EKESLLELDLRGNK-FGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred cCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 34667777777763 3322111 012 456666666655
No 36
>PF05729 NACHT: NACHT domain
Probab=98.93 E-value=4.7e-09 Score=104.93 Aligned_cols=143 Identities=20% Similarity=0.289 Sum_probs=88.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccc----cceeEEEEEcCCCChH---HHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKGWTCVSDDFDVP---RVTKSILESIANVTVDDNNLNSLQVKLK 189 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 189 (1206)
|++.|+|.+|+||||+++.++........ +...+|.......... .+...+....... ...... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES---IAPIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc---hhhhHH---HHH
Confidence 48999999999999999999875332222 3455566665443322 2333333333211 111111 122
Q ss_pred H-HhCCCceEEEEeCCCccCHh-------hHHhhhccCCCC--CCCcEEEEEccchHH---HhhcCCCCceeCCCCChhh
Q 045303 190 E-RLSGKKFLLVLDDVWNENYI-------RWSELRCPFVAG--AAGSKIVVTTRNLVV---AERMRADPVYQLKKLSDDD 256 (1206)
Q Consensus 190 ~-~l~~~~~LlvlDdv~~~~~~-------~~~~l~~~l~~~--~~~~~iliTtr~~~~---~~~~~~~~~~~l~~l~~~e 256 (1206)
. .-..+++++|+|++++.... .+..+...+... .++++++||+|.... .........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 2 22578999999999765431 122333333333 578999999998655 3444455689999999999
Q ss_pred HHHHHHHhh
Q 045303 257 CLCVLTQIS 265 (1206)
Q Consensus 257 ~~~l~~~~~ 265 (1206)
..+++.++.
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998764
No 37
>PTZ00202 tuzin; Provisional
Probab=98.85 E-value=1.6e-06 Score=93.42 Aligned_cols=170 Identities=14% Similarity=0.163 Sum_probs=105.7
Q ss_pred cccCCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 82 TTSLVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 82 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
...|++.++|+||++++.++...|...+. ..+++++|+|++|+|||||++.+..... ...++.... +..
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~e 323 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTE 323 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHH
Confidence 44566778999999999999999975432 2456999999999999999999986322 123333333 679
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-----C-CCceEEEEeCCCccCHhh-HHhhhccCCCCCCCcEEEEEccc
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERL-----S-GKKFLLVLDDVWNENYIR-WSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlvlDdv~~~~~~~-~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
++++.++.+++.... ....++...+.+.+ . +++.+||+-=-+..+... ..+. ..+.....-|.|++----
T Consensus 324 ElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpl 400 (550)
T PTZ00202 324 DTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPL 400 (550)
T ss_pred HHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehH
Confidence 999999999997332 22233333333322 2 566666654221121111 1111 123334456777776554
Q ss_pred hHHHhh---cCCCCceeCCCCChhhHHHHHHHhh
Q 045303 235 LVVAER---MRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 235 ~~~~~~---~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
+.+... ...-..|.+++|+.++|.++.....
T Consensus 401 eslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 401 ESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 433211 1223468899999999998877653
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.71 E-value=9.8e-09 Score=99.54 Aligned_cols=82 Identities=29% Similarity=0.458 Sum_probs=27.7
Q ss_pred ccCCceeEEEecCCCCcccCCcccc-CccccceeeccccccccccccccccccccEEecCCCcccccccccc-cCCCccc
Q 045303 497 NHLPRLRVFSLCGYSNIFSLPNEIG-NLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDM-GNLTKLR 574 (1206)
Q Consensus 497 ~~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~-~~L~~L~ 574 (1206)
.+..+++.|+|++| .+..+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++| .+..+++.+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 44557888999998 777664 455 5788999999999998885 4778899999999998 676775555 4688999
Q ss_pred eeecCCCC
Q 045303 575 HLRNSNAD 582 (1206)
Q Consensus 575 ~L~l~~n~ 582 (1206)
+|++++|.
T Consensus 92 ~L~L~~N~ 99 (175)
T PF14580_consen 92 ELYLSNNK 99 (175)
T ss_dssp EEE-TTS-
T ss_pred EEECcCCc
Confidence 99998887
No 39
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.67 E-value=5.8e-07 Score=95.04 Aligned_cols=204 Identities=24% Similarity=0.251 Sum_probs=114.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
+++.-..+||+||+||||||+.++. .....| ..++...+-..-++++++.. -+....
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i~e~a----------------~~~~~~ 102 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREIIEEA----------------RKNRLL 102 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHHHHHH----------------HHHHhc
Confidence 4677888999999999999999987 333334 23333332222233333221 122335
Q ss_pred CCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEE--EccchHHH---hhcCCCCceeCCCCChhhHHHHHHHhhhCC
Q 045303 194 GKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV--TTRNLVVA---ERMRADPVYQLKKLSDDDCLCVLTQISLGA 268 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ili--Ttr~~~~~---~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~ 268 (1206)
+++.+|++|.|..-+..+-+.+ ++....|.-|+| ||.++... .-.....++.+++|+.++..+++.+.+...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred CCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence 8999999999976553333332 333345666665 55554321 112345689999999999999998843221
Q ss_pred CC-CC-C-ChhhHHHHHHHHHhcCCcchH-HHHH--HhhhCCCC---ChhHHHHHHhhhccccCC--C---CchHHHHHh
Q 045303 269 RD-FT-R-HQSLKEVGEQIVIKCGGLPLA-AKTL--GGLLRGRD---DPRDWEFVLKNDIWNLRD--S---DILPALRVS 334 (1206)
Q Consensus 269 ~~-~~-~-~~~~~~~~~~i~~~~~g~Pla-l~~~--~~~l~~~~---~~~~w~~~~~~~~~~~~~--~---~v~~~l~~s 334 (1206)
.. .. . ..-.+++.+-+++.++|---+ ++.+ +..+.... ..+..+..+.+....... + ++..+|..|
T Consensus 180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKS 259 (436)
T COG2256 180 ERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKS 259 (436)
T ss_pred hcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHh
Confidence 11 11 0 112245667788888886543 2222 22222221 234444444433222211 1 778888888
Q ss_pred hcCCChhHH
Q 045303 335 YHFLPPQLK 343 (1206)
Q Consensus 335 ~~~L~~~~k 343 (1206)
...=++++.
T Consensus 260 vRGSD~dAA 268 (436)
T COG2256 260 VRGSDPDAA 268 (436)
T ss_pred hccCCcCHH
Confidence 877665543
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.66 E-value=2.3e-07 Score=96.73 Aligned_cols=156 Identities=19% Similarity=0.172 Sum_probs=93.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
.+.+.|+|++|+|||+||+.+++. .......+.|+.+... ..... .+.+.+. +
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~ 91 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-Q 91 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-c
Confidence 357899999999999999999974 2222234556555311 00000 1111122 3
Q ss_pred ceEEEEeCCCccC-HhhHHh-hhccCCCC-CCCcEEE-EEccc---------hHHHhhcCCCCceeCCCCChhhHHHHHH
Q 045303 196 KFLLVLDDVWNEN-YIRWSE-LRCPFVAG-AAGSKIV-VTTRN---------LVVAERMRADPVYQLKKLSDDDCLCVLT 262 (1206)
Q Consensus 196 ~~LlvlDdv~~~~-~~~~~~-l~~~l~~~-~~~~~il-iTtr~---------~~~~~~~~~~~~~~l~~l~~~e~~~l~~ 262 (1206)
.-+||+||+|... ...|+. +...+... ..+..+| +|+.. +.+...+.....++++++++++.+++++
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQ 171 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHH
Confidence 3589999998643 234543 22222211 2355554 45543 2344445556688999999999999999
Q ss_pred HhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhh
Q 045303 263 QISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL 302 (1206)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 302 (1206)
+.+...+- .-.+++..-|++++.|-.-++..+-..+
T Consensus 172 ~~a~~~~l----~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGI----ELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCC----CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 88864321 2234777888899988776665544433
No 41
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=2.6e-08 Score=115.13 Aligned_cols=182 Identities=29% Similarity=0.373 Sum_probs=132.3
Q ss_pred hccCCceeEEEecCCCCcccCCccccCcc-ccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccc
Q 045303 496 LNHLPRLRVFSLCGYSNIFSLPNEIGNLK-HLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 574 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~~~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~ 574 (1206)
...++.++.|++.+| .+..+|.....+. +|++|++++|.+..+|..+..+++|+.|++++| .+..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 345588999999999 9999998888785 999999999999999888999999999999999 8888888777999999
Q ss_pred eeecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCce
Q 045303 575 HLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQAL 654 (1206)
Q Consensus 575 ~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L 654 (1206)
.|++++|. +..+|..++.+..|++|....... ......+..+
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~-------------------------------~~~~~~~~~~------ 231 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSI-------------------------------IELLSSLSNL------ 231 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCcc-------------------------------eecchhhhhc------
Confidence 99999999 888887776666676664333210 0001112222
Q ss_pred EEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeec
Q 045303 655 SLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDIS 734 (1206)
Q Consensus 655 ~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~ 734 (1206)
.++..+.+.++....++..+. .+++++.|++++|.+..++.++.+.+++.|+++
T Consensus 232 ------------------------~~l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 232 ------------------------KNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred ------------------------ccccccccCCceeeeccchhc--cccccceeccccccccccccccccCccCEEecc
Confidence 233333333443333344454 566788888888888777778888888888888
Q ss_pred CCCCceeec
Q 045303 735 GMDGVVSVG 743 (1206)
Q Consensus 735 ~~~~~~~~~ 743 (1206)
++......+
T Consensus 286 ~n~~~~~~~ 294 (394)
T COG4886 286 GNSLSNALP 294 (394)
T ss_pred Cccccccch
Confidence 876555443
No 42
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.9e-06 Score=93.71 Aligned_cols=253 Identities=16% Similarity=0.123 Sum_probs=150.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccc--eeEEEEEcCCCChHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--IKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~ 165 (1206)
|..+.+||++++++...|...-. +..+.-+.|+|.+|+|||+.++.+.+. +..... .++++.+....+..+++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHH
Confidence 34499999999999999876543 233445999999999999999999984 333322 268899999999999999
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhC--CCceEEEEeCCCccCHhhHHhhhccCCCCCC-CcE--EEEEccchHHHhh
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERLS--GKKFLLVLDDVWNENYIRWSELRCPFVAGAA-GSK--IVVTTRNLVVAER 240 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~-~~~--iliTtr~~~~~~~ 240 (1206)
.++..++..........+....+.+.+. ++.+++|||+++......-+.+..-+..... .++ ||..+-+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 9999997555555666667777777764 5789999999965321111222222222211 333 3333333322211
Q ss_pred c----C---CCCceeCCCCChhhHHHHHHHhhhCCC-CCCCChhhHHHHHHHHHhcCC-cchHHHHH--HhhhCCCC---
Q 045303 241 M----R---ADPVYQLKKLSDDDCLCVLTQISLGAR-DFTRHQSLKEVGEQIVIKCGG-LPLAAKTL--GGLLRGRD--- 306 (1206)
Q Consensus 241 ~----~---~~~~~~l~~l~~~e~~~l~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g-~Plal~~~--~~~l~~~~--- 306 (1206)
+ . ....+...|.+.+|-.+++..++-..- +....+..-+.+..++..-+| --.||..+ |+.++.+.
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~ 251 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSR 251 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCC
Confidence 1 1 123478899999999999988874321 112334444555555566664 33444433 23332211
Q ss_pred --ChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCC
Q 045303 307 --DPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLF 352 (1206)
Q Consensus 307 --~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~f 352 (1206)
..+.-..+.. + --..........|+.+.|-.+......
T Consensus 252 ~v~~~~v~~a~~----~----~~~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 252 KVSEDHVREAQE----E----IERDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred CcCHHHHHHHHH----H----hhHHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 1111111110 0 112344455788998888776555433
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.7e-09 Score=110.78 Aligned_cols=110 Identities=12% Similarity=0.116 Sum_probs=57.2
Q ss_pred ccCCCccceeeccccCCcccccC-CCCCCCCccEEEeccccCccc-cccccCCCCccCeeeeecCCCCcc-CCCCCCCCC
Q 045303 989 LHNLHHLQKIWIGYCPNLESFPE-EGLPSTKLTELTIWDCENLKA-LPNCMHNLTSLLDLDIRGCPSVVS-FPEDGFPTN 1065 (1206)
Q Consensus 989 ~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~ 1065 (1206)
...+|+|+.|+|+.|.+...... .-..++.|+.|.|++|.+... +-.....+|+|+.|+|..|..... ......+..
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 34566666666666654332211 112345666666666665531 222334566677777776642221 111245566
Q ss_pred cCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1066 LQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1066 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
|++|||++|.+...-.......++.|+.|+++.
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccc
Confidence 677777766665322222345566666666654
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.61 E-value=1e-06 Score=86.95 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=97.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.-.+|||.+..++.+.-++..... ..+...-+.+||+||+||||||.-+++. ....|. + .+.+ ..
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~--~sg~-~i------ 86 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---I--TSGP-AI------ 86 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---E--EECC-C-------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---e--ccch-hh------
Confidence 357899999999887665543221 1245678999999999999999999983 333342 1 1211 00
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCC--------CCC-----------CcE
Q 045303 167 ILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVA--------GAA-----------GSK 227 (1206)
Q Consensus 167 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~--------~~~-----------~~~ 227 (1206)
....++...+.. + +++.+|++|+++.-....-+.+...+-+ .++ =+-
T Consensus 87 ------------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 87 ------------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred ------------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 001111111111 2 2455788899876554333333322211 111 234
Q ss_pred EEEEccchHHHhhcCC-CC-ceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhC
Q 045303 228 IVVTTRNLVVAERMRA-DP-VYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLR 303 (1206)
Q Consensus 228 iliTtr~~~~~~~~~~-~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 303 (1206)
|=.|||...+...+.. +. ..+++..+.+|-.++..+.+..-+ -+-..+.+.+|++++.|-|--..-+-..++
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 5667887555443332 22 347999999999999987663322 233467899999999999965554444443
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=2.8e-08 Score=96.38 Aligned_cols=106 Identities=29% Similarity=0.372 Sum_probs=55.8
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccc-cccccccEEecCCCccccccc--ccccCCCccc
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLEDCWKLKKLC--KDMGNLTKLR 574 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~-~~L~~L~~L~L~~n~~~~~lp--~~~~~L~~L~ 574 (1206)
.+.+|++|+|++| .+..++ .+..+++|++|++++|+|+.++..+ ..+++|+.|++++| .+..+. ..+..+++|+
T Consensus 40 ~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~ 116 (175)
T PF14580_consen 40 TLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLR 116 (175)
T ss_dssp T-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--
T ss_pred hhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcc
Confidence 5789999999999 888886 5888999999999999999997666 46999999999999 565543 3467899999
Q ss_pred eeecCCCCccccCCcc----cCCcCccccCCceEeCC
Q 045303 575 HLRNSNADELEEMPKG----FGKLTCLLTLGRFVVGK 607 (1206)
Q Consensus 575 ~L~l~~n~~~~~~p~~----~~~l~~L~~L~~~~~~~ 607 (1206)
+|++.+|+ +...+.- +..+++|+.|+...+..
T Consensus 117 ~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 117 VLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred eeeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 99999999 4444432 67888999998766554
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.59 E-value=3.7e-09 Score=115.04 Aligned_cols=174 Identities=24% Similarity=0.298 Sum_probs=118.4
Q ss_pred HhccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccc
Q 045303 495 LLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 574 (1206)
Q Consensus 495 ~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~ 574 (1206)
-+..|..|..|.|.+| .+..+|..++++..|.+|||+.|+++.+|..++.|+ |+.|-+++| +++.+|..++.+..|.
T Consensus 93 ~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~ 169 (722)
T KOG0532|consen 93 EACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLA 169 (722)
T ss_pred HHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHH
Confidence 3555666777788887 788888888888888888888888888888877775 788888888 7888888888888888
Q ss_pred eeecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCce
Q 045303 575 HLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQAL 654 (1206)
Q Consensus 575 ~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L 654 (1206)
+||.+.|. +..+|..++.+.+|+.|.+..+.
T Consensus 170 ~ld~s~ne-i~slpsql~~l~slr~l~vrRn~------------------------------------------------ 200 (722)
T KOG0532|consen 170 HLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH------------------------------------------------ 200 (722)
T ss_pred Hhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh------------------------------------------------
Confidence 88888887 77778777777777776432211
Q ss_pred EEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCC----CCCCCCCce
Q 045303 655 SLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPS----VGQLPFLKE 730 (1206)
Q Consensus 655 ~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~----l~~l~~L~~ 730 (1206)
... .+..+. .-.|..|+++.|++..+|-.+. .+..|+.|.|.+|.+...|. -|...-.++
T Consensus 201 ------l~~-------lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 201 ------LED-------LPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY 264 (722)
T ss_pred ------hhh-------CCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence 100 011111 1235566666666666776665 57777777777777766552 344444556
Q ss_pred eeecCC
Q 045303 731 LDISGM 736 (1206)
Q Consensus 731 L~L~~~ 736 (1206)
|+..-|
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 666554
No 47
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.59 E-value=1.4e-07 Score=89.70 Aligned_cols=118 Identities=19% Similarity=0.213 Sum_probs=82.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccc---cccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQ---RHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKER 191 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 191 (1206)
+.+++.|+|.+|+|||++++++.+..... ..-..++|+.+....+...+...++..++.......+.+++.+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34689999999999999999998742110 002456788888877999999999999987766656777777888888
Q ss_pred hCCCc-eEEEEeCCCcc-CHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 192 LSGKK-FLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 192 l~~~~-~LlvlDdv~~~-~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
+...+ .+||+|+++.. ....++.+.. +.. ..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 86655 59999999776 5444444543 323 567778887765
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.59 E-value=2.4e-06 Score=98.03 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=105.3
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEK---IIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
-.++||++..+.. +..++... ....+.|+|++|+||||+|+.+++. ....| +.++.........
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~i 77 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDL 77 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHH
Confidence 3568999888666 77777432 3457888999999999999999873 22222 2222211111111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHH-hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEE--EccchH--HH-
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKER-LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV--TTRNLV--VA- 238 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ili--Ttr~~~--~~- 238 (1206)
+.++ +..... ..+++.+|++|+++.......+.+...+.. +..++| ||.+.. +.
T Consensus 78 r~ii-----------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVI-----------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHH-----------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccH
Confidence 2222 111111 245788999999987765555555544332 344444 344332 11
Q ss_pred hhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 045303 239 ERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLG 299 (1206)
Q Consensus 239 ~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 299 (1206)
........+.+.+++.++..+++.+.+..... .......+..+.|++.++|.+..+..+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11123367899999999999999886532111 0012235677889999999987654443
No 49
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.58 E-value=2e-07 Score=99.35 Aligned_cols=291 Identities=18% Similarity=0.182 Sum_probs=183.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccce-eEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQI-KGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
..|.+.++|.|||||||++-.+.. ....|.. +.++....-.+...+.-.+...++....+ -+.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP---GDSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc---chHHHHHHHHHHh
Confidence 457999999999999999987775 4455654 44555555556666666666666543322 2233445666778
Q ss_pred CCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHhhcCCCCceeCCCCChh-hHHHHHHHhhhCCC-CC
Q 045303 194 GKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMRADPVYQLKKLSDD-DCLCVLTQISLGAR-DF 271 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~~~~~~~~~l~~l~~~-e~~~l~~~~~~~~~-~~ 271 (1206)
++|.++|+||....- ..-..+...+......-.++.|+|..... .......+..++.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccce
Confidence 899999999994432 22223333455555666789999975432 34445667777654 78888876663222 11
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCCh-------hHHHHHHhhh-ccccCCCCchHHHHHhhcCCChhHH
Q 045303 272 TRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDP-------RDWEFVLKND-IWNLRDSDILPALRVSYHFLPPQLK 343 (1206)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~-------~~w~~~~~~~-~~~~~~~~v~~~l~~s~~~L~~~~k 343 (1206)
...........+|.++.+|.|++|..+++..+.-... +.|....... ............+.+||.-|..-.+
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 2233446778899999999999999999888764221 1222211110 0001112678899999999999999
Q ss_pred HHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCCCCHHHHHHHHHHHHHhCCccccccC-CCCceeehHHHHHHHHHh
Q 045303 344 QCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMEDLGREFVRELHSRSLFQQSSK-GASRFVMHDLINDLARWA 422 (1206)
Q Consensus 344 ~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~-~~~~~~~H~lv~~~~~~~ 422 (1206)
-.|..++.|...|... ...|.+.|-... ...-.....+..+++++++..... +...|+.-+=++.|+..+
T Consensus 243 ~~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999998887655 233444332110 011224455778888888765432 344566666666666655
Q ss_pred hc
Q 045303 423 AG 424 (1206)
Q Consensus 423 ~~ 424 (1206)
..
T Consensus 314 L~ 315 (414)
T COG3903 314 LH 315 (414)
T ss_pred HH
Confidence 44
No 50
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.8e-06 Score=99.31 Aligned_cols=194 Identities=15% Similarity=0.093 Sum_probs=114.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.++||.+...+.|..++.... -.+.+.++|+.|+||||+|+.+++..-... ++.. .....-...+.+
T Consensus 14 FddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I 81 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAV 81 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHH
Confidence 4679999999999999996432 246889999999999999999986321111 1000 000000111111
Q ss_pred HHhcc-----CCCCCCCCHHHHHHHHHH----HhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HH
Q 045303 168 LESIA-----NVTVDDNNLNSLQVKLKE----RLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VV 237 (1206)
Q Consensus 168 ~~~l~-----~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~ 237 (1206)
...-. .........+++.+.+.. ...+++-++|+|+++..+......+...+.....++++|++|.+. .+
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 11000 000011223332222211 123566799999998877666666665555544566777777653 22
Q ss_pred Hhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHH
Q 045303 238 AER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKT 297 (1206)
Q Consensus 238 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 297 (1206)
... ......+++++++.++..+.+.+.+...+. ....+.+..|++.++|-+- |+..
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 211 233467899999999999998877643321 2234677889999999774 4433
No 51
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=8.4e-09 Score=102.80 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=46.4
Q ss_pred hccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccc----c--------------------ccccccccE
Q 045303 496 LNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPE----S--------------------INSLYNLHT 551 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~----~--------------------~~~L~~L~~ 551 (1206)
+.-+++|+.+.++.| ....+-.--..=+.|+++...++.++..|. . +...+.|+.
T Consensus 210 l~~f~~l~~~~~s~~-~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSAL-STENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred hHHhhhhheeeeecc-chhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 445677777788887 444443222233567778777766553321 1 122344555
Q ss_pred EecCCCcccccccccccCCCccceeecCCCC
Q 045303 552 ILLEDCWKLKKLCKDMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 552 L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~ 582 (1206)
+||++| .++.+.+++.-+++++.|++++|.
T Consensus 289 lDLS~N-~I~~iDESvKL~Pkir~L~lS~N~ 318 (490)
T KOG1259|consen 289 LDLSGN-LITQIDESVKLAPKLRRLILSQNR 318 (490)
T ss_pred cccccc-chhhhhhhhhhccceeEEeccccc
Confidence 555555 555555555555555555555554
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=98.55 E-value=4.4e-06 Score=97.86 Aligned_cols=248 Identities=19% Similarity=0.144 Sum_probs=137.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|+++.++++.+|+..... ....+.+.|+|++|+||||+|+.+++... |+ .+-+..+...+ ......+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~-~~~i~~~ 84 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRT-ADVIERV 84 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEccccccc-HHHHHHH
Confidence 45799999999999999975432 12267899999999999999999988421 22 22223332222 1222222
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH----hhHHhhhccCCCCCCCcEEEEEccch-HHHh-hc
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY----IRWSELRCPFVAGAAGSKIVVTTRNL-VVAE-RM 241 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~-~~ 241 (1206)
+....... .....++-+||+|+++.... ..+..+...+.. .+..||+|+.+. .... .+
T Consensus 85 i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 85 AGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22211100 00113677999999976532 223444333332 334466666442 1111 11
Q ss_pred -CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCC-CC--ChhHHHHHHhh
Q 045303 242 -RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRG-RD--DPRDWEFVLKN 317 (1206)
Q Consensus 242 -~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~--~~~~w~~~~~~ 317 (1206)
.....+.+.+++.++....+...+...+. . ...++...|++.++|-.-.+......+.. .. ..+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~---i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGI-E---CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 23457899999999999988887644332 1 22467889999999876544333222322 21 1222222211
Q ss_pred hccccCCCCchHHHHHhhc-CCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCccc
Q 045303 318 DIWNLRDSDILPALRVSYH-FLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQ 375 (1206)
Q Consensus 318 ~~~~~~~~~v~~~l~~s~~-~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~ 375 (1206)
......++.++...+. .-...+...+..+ .++. ..+..|+.+.+...
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1122367777777765 3333344333222 2223 35778999998764
No 53
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=2e-06 Score=100.10 Aligned_cols=196 Identities=13% Similarity=0.116 Sum_probs=116.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
..++||.+..++.|..++.... -.+.+.++|..|+||||+|+.+.+.......... ..+.. -...+.+
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~---~PCG~----C~sCr~I 82 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS---QPCGV----CRACREI 82 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC---CCCcc----cHHHHHH
Confidence 4679999999999999986432 2457789999999999999988763211111100 00000 0111111
Q ss_pred HHh-----ccCCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-H
Q 045303 168 LES-----IANVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-V 237 (1206)
Q Consensus 168 ~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~ 237 (1206)
... +..........+++.+.+... ..++.-++|||+++..+...|..++..+.......++|++|.+.. +
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 100 000000111222322222221 124556899999998887777777766655556778888777643 3
Q ss_pred Hhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHHH
Q 045303 238 AER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTLG 299 (1206)
Q Consensus 238 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 299 (1206)
... ......+.+++++.++..+.+.+.+...+. ....+....|++.++|.. -|+..+-
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 123357899999999999999887643221 123567788999998865 4665543
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=1.3e-08 Score=107.50 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=134.6
Q ss_pred CCCcceeeeccccCcCccc-ccccCCCccceeeccccCCcc--cccCCCCCCCCccEEEeccccCcccccccc-CCCCcc
Q 045303 968 NTSLEEITILNLENLKSLP-AGLHNLHHLQKIWIGYCPNLE--SFPEEGLPSTKLTELTIWDCENLKALPNCM-HNLTSL 1043 (1206)
Q Consensus 968 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~l~~L 1043 (1206)
..+|++..+.++....... .-...|++++.|+|+.|-+.. .+-.....+|+|+.|+|+.|.+.....+.. ..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3678888888776432211 345679999999999995443 223345678999999999998765433222 267889
Q ss_pred CeeeeecCCCCccCCCC--CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCC-----CCCCCcce
Q 045303 1044 LDLDIRGCPSVVSFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP-----FPASLTGL 1116 (1206)
Q Consensus 1044 ~~L~L~~n~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~-----~~~~L~~L 1116 (1206)
+.|.|+.|.++..--.. ..+|+|+.|+|..|.... +......-+..|+.|+|++ |++.+++. .++.|..|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~-~~~~~~~i~~~L~~LdLs~--N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL-IKATSTKILQTLQELDLSN--NNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc-eecchhhhhhHHhhccccC--Ccccccccccccccccchhhh
Confidence 99999999886321111 568999999999996332 2222456678899999986 55556653 45555555
Q ss_pred eeccCCCCccc--cC----CCCCcCcccccccccCCC--CCCCCCCCCccccceecccCChhhHH
Q 045303 1117 EISDMPDLECL--SS----IGENLTSLKYLYLIDCPK--LKYFPEQGLPKSLLQLHIKGCPLIEE 1173 (1206)
Q Consensus 1117 ~~~~~~~~~~~--~~----~~~~l~~L~~L~l~~n~~--l~~l~~~~~~~~L~~L~l~~c~~l~~ 1173 (1206)
.++++..-.+- +. ....+++|++|++..|+. ...+.....+++|+.|.+.+++.-++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 55544332221 11 125689999999999964 34444444578888888888776443
No 55
>PLN03150 hypothetical protein; Provisional
Probab=98.54 E-value=1.1e-07 Score=114.72 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=58.2
Q ss_pred cceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeec
Q 045303 971 LEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRG 1050 (1206)
Q Consensus 971 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 1050 (1206)
+..|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++++++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44455555555555555555566666666666655555555555556666666666655555555555566666666666
Q ss_pred CCCCccCCCC--CCCCCcCeEEEeCcC
Q 045303 1051 CPSVVSFPED--GFPTNLQSLEVRGLK 1075 (1206)
Q Consensus 1051 n~~~~~~~~~--~~~~~L~~L~Ls~n~ 1075 (1206)
|.+.+.+|.. ..+.++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 5555555543 112334445555444
No 56
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=3.1e-06 Score=95.04 Aligned_cols=190 Identities=14% Similarity=0.153 Sum_probs=110.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+..++.+...+.... -.+.+.++|++|+||||+|+.+++.......+.. .+...-....++
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~ 82 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEI 82 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHH
Confidence 4679999999999999886432 3467899999999999999999873211110100 000000111111
Q ss_pred HHhc----c-CCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-H
Q 045303 168 LESI----A-NVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-V 236 (1206)
Q Consensus 168 ~~~l----~-~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~ 236 (1206)
.... . .........++.. .+.+.+ .+++-++|+|+++......+..+...+.......++|++|.+. .
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir-~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMR-EILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHHHH-HHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 1100 0 0000011222222 122221 2345699999998877666777766665555566777766543 3
Q ss_pred HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchH
Q 045303 237 VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLA 294 (1206)
Q Consensus 237 ~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 294 (1206)
+.... .....+++.+++.++..+.+...+...+. ...++.++.|++.++|.|-.
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~----~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI----DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 33221 22357899999999999988876643221 12346678899999997753
No 57
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.52 E-value=9e-07 Score=93.30 Aligned_cols=176 Identities=19% Similarity=0.182 Sum_probs=101.7
Q ss_pred Ccccc--chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 89 PKVYG--REKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 89 ~~~vG--r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.+|++ .+..++++.+++.. ...+.+.|+|++|+|||++|+.+++. ........+++.+..-. ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~--~~~~~~~~~~i~~~~~~------~~ 80 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAA--AEERGKSAIYLPLAELA------QA 80 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHH--HHhcCCcEEEEeHHHHH------Hh
Confidence 44552 34466777766532 24568999999999999999999873 22222234454443211 10
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHh-hHH-hhhccCCC-CCCCcEEEEEccchH-------
Q 045303 167 ILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYI-RWS-ELRCPFVA-GAAGSKIVVTTRNLV------- 236 (1206)
Q Consensus 167 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~-~~~-~l~~~l~~-~~~~~~iliTtr~~~------- 236 (1206)
. . .+...+.+ .-+||+||++..... .|. .+...+.. ...+.++|+|++...
T Consensus 81 ~--------------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 81 D--------------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred H--------------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 0 0 01111222 238999999765421 222 23322211 123457888887532
Q ss_pred --HHhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhh
Q 045303 237 --VAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGL 301 (1206)
Q Consensus 237 --~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 301 (1206)
+...+.....+++.++++++...++...+...+ -.-.+++.+.+++.++|.|..+..+...
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRG----LQLPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 111222235789999999999999887653222 1123466788888899999887766543
No 58
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.51 E-value=1.9e-07 Score=95.04 Aligned_cols=47 Identities=28% Similarity=0.432 Sum_probs=32.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 90 KVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.||||+++++++...+... .....+.+.|+|.+|+|||+|+++++..
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999622 2346789999999999999999999874
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=3.3e-06 Score=93.16 Aligned_cols=178 Identities=16% Similarity=0.201 Sum_probs=115.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCc----ccccccceeEEEEE-cCCCChHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDD----RVQRHFQIKGWTCV-SDDFDVPRV 163 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~----~~~~~f~~~~wv~~-~~~~~~~~~ 163 (1206)
.+++|.+...+.+..++.... -.+...++|+.|+|||++|+.++... ....+.+...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 468899999999999986432 35678899999999999999998731 12234444444331 22222222
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHH-hh-c
Q 045303 164 TKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVA-ER-M 241 (1206)
Q Consensus 164 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~-~~-~ 241 (1206)
.+++.+.+... -..+++-++|+|+++..+...+..+...+.....++.+|++|.+.... .. .
T Consensus 78 ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 22222222110 112455688889998777778888887777767788888888764321 11 1
Q ss_pred CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 242 RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 242 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
.....+.+.++++++....+.+...+ ...+.++.++..++|.|..+.
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND--------IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHH
Confidence 23357899999999998888764311 113457788999999886544
No 60
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.49 E-value=2.3e-08 Score=99.78 Aligned_cols=126 Identities=17% Similarity=0.157 Sum_probs=86.1
Q ss_pred cCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCC---CCCCC
Q 045303 1037 MHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP---FPASL 1113 (1206)
Q Consensus 1037 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~---~~~~L 1113 (1206)
+...+.|++||||+|.+...-......|.++.|++|+|.++.. . .++.+++|+.|+||+ |.+..+.. .+++.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v-~--nLa~L~~L~~LDLS~--N~Ls~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV-Q--NLAELPQLQLLDLSG--NLLAECVGWHLKLGNI 354 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee-h--hhhhcccceEeeccc--chhHhhhhhHhhhcCE
Confidence 3456678888888887766544447778888888888888732 2 377788888888876 55555554 45555
Q ss_pred cceeeccCCCCccccCCCCCcCcccccccccCCCCCCCC---CCCCccccceecccCChh
Q 045303 1114 TGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFP---EQGLPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1114 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~---~~~~~~~L~~L~l~~c~~ 1170 (1206)
+.|.+..+..-.+++ ...+.+|..||+++| +++.+. ..+-++.|+.+.+.+||.
T Consensus 355 KtL~La~N~iE~LSG--L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 355 KTLKLAQNKIETLSG--LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eeeehhhhhHhhhhh--hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 555554443222222 146778889999988 565554 345688899999999885
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.2e-06 Score=100.55 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=113.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
..++||.+..++.|..++.... -.+.+.++|++|+||||+|+.+++..-........ .+... .....+
T Consensus 15 FddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~C----~sC~~i 82 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGVC----SSCVEI 82 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCCc----hHHHHH
Confidence 4679999999999999886532 24566899999999999999998742111110000 00000 000111
Q ss_pred HHhc-----cCCCCCCCCHHHH---HHHHH-HHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHH
Q 045303 168 LESI-----ANVTVDDNNLNSL---QVKLK-ERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVV 237 (1206)
Q Consensus 168 ~~~l-----~~~~~~~~~~~~~---~~~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~ 237 (1206)
.... ..........+++ .+.+. ....+++-++|||+++......+..++..+-......++|++|.+ ..+
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kL 162 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhc
Confidence 1000 0000001112222 11111 112356779999999888777777777666554456666666554 333
Q ss_pred Hhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHH
Q 045303 238 AER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTL 298 (1206)
Q Consensus 238 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 298 (1206)
... ......+++++++.++..+++.+.+...+ -....+.+..|++.++|.|- |+.++
T Consensus 163 l~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 163 PVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred hHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 322 12346799999999999999988663321 12234678889999999875 44443
No 62
>PLN03150 hypothetical protein; Provisional
Probab=98.48 E-value=1.6e-07 Score=113.13 Aligned_cols=105 Identities=19% Similarity=0.167 Sum_probs=90.6
Q ss_pred ccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEe
Q 045303 994 HLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVR 1072 (1206)
Q Consensus 994 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls 1072 (1206)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|.. ..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999998999999999999999999999999999999999999999999999999888876 888999999999
Q ss_pred CcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1073 GLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1073 ~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
+|.+++.+|......+.++..+++.+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CCcccccCChHHhhccccCceEEecC
Confidence 99999999974222234566777765
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.47 E-value=4.2e-06 Score=94.48 Aligned_cols=196 Identities=16% Similarity=0.135 Sum_probs=107.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccc-eeEEEEEcCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 166 (1206)
-.+++|++..++.+..++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.+.++.-.+ .....
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~--~~~~~ 84 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFD--QGKKY 84 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhh--cchhh
Confidence 357899999999999988542 334678999999999999999886321 11111 123333322100 00000
Q ss_pred HH------HhccCC-CCCCCCHHHHHHHHHHH---h--CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 167 IL------ESIANV-TVDDNNLNSLQVKLKER---L--SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 167 i~------~~l~~~-~~~~~~~~~~~~~l~~~---l--~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
+. ..++.. .......+.....+... . .+.+-+||+||++.........+...+......+++|+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~ 164 (337)
T PRK12402 85 LVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQ 164 (337)
T ss_pred hhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 00 000000 00000112122212111 1 134458999999766543444444433333445778877754
Q ss_pred hH-HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 235 LV-VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 235 ~~-~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
.. +...+ .....+++.+++.++..+++...+...+. .-..+.++.+++.++|.+-.+.
T Consensus 165 ~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 165 PSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 32 22211 22346888999999999999887643321 1235678889999998765543
No 64
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=6.1e-09 Score=113.40 Aligned_cols=99 Identities=25% Similarity=0.424 Sum_probs=89.1
Q ss_pred HHHHHhccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCC
Q 045303 491 VLKMLLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNL 570 (1206)
Q Consensus 491 ~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L 570 (1206)
..+..+..+..|.+|||+.| .+..+|..++.| -|++|-+++|+++.+|..++.+..|..||.+.| .+..+|..++++
T Consensus 112 ~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l 188 (722)
T KOG0532|consen 112 TIPEAICNLEALTFLDLSSN-QLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYL 188 (722)
T ss_pred ecchhhhhhhHHHHhhhccc-hhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhH
Confidence 34556788999999999999 999999888865 499999999999999999999999999999999 899999999999
Q ss_pred CccceeecCCCCccccCCcccCC
Q 045303 571 TKLRHLRNSNADELEEMPKGFGK 593 (1206)
Q Consensus 571 ~~L~~L~l~~n~~~~~~p~~~~~ 593 (1206)
.+|+.|++..|+ +..+|..+..
T Consensus 189 ~slr~l~vrRn~-l~~lp~El~~ 210 (722)
T KOG0532|consen 189 TSLRDLNVRRNH-LEDLPEELCS 210 (722)
T ss_pred HHHHHHHHhhhh-hhhCCHHHhC
Confidence 999999999999 7888877653
No 65
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=8.5e-06 Score=94.26 Aligned_cols=186 Identities=18% Similarity=0.111 Sum_probs=112.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc-------------------ccce
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFQI 148 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~ 148 (1206)
-.+++|.+..++.|..++.... -.+.+.++|++|+||||+|+.+++...... .|..
T Consensus 15 f~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 4579999999999999886432 345678999999999999999986321100 0111
Q ss_pred eEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcE
Q 045303 149 KGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKER-LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 227 (1206)
Q Consensus 149 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ 227 (1206)
.+++.......+ .+..++.+.+... ..+++-++|+|+++..+...+..++..+-.....+.
T Consensus 90 lieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 90 LIEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred eEEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 112211111111 1112222222211 235667999999988776667777766655445565
Q ss_pred EE-EEccchHHHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHHHh
Q 045303 228 IV-VTTRNLVVAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTLGG 300 (1206)
Q Consensus 228 il-iTtr~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 300 (1206)
+| +||....+... ......+++++++.++..+.+.+.+...+ -....+....|++.++|-+ -|+..+-.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55 45444333322 22346889999999998888877553322 1223466788999999965 45555543
No 66
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=2.2e-07 Score=73.68 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=39.0
Q ss_pred CccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCC
Q 045303 993 HHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCP 1052 (1206)
Q Consensus 993 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 1052 (1206)
|+|++|++++|.+....+..|.++++|++|++++|.+....|..|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456667777665554444566666777777777666666556666777777777777665
No 67
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=7.8e-07 Score=102.79 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=113.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+...+.|..++.... -.+.+.++|++|+||||+|+.+++.....+.+....|.+.+.. .+......-
T Consensus 13 ~~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~d 86 (504)
T PRK14963 13 FDEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPD 86 (504)
T ss_pred HHHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCc
Confidence 3578999999999988886532 3467799999999999999999874322121211222211100 000000000
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHH-----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHHHhhc
Q 045303 168 LESIANVTVDDNNLNSLQVKLKER-----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVAERM 241 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~~~~~ 241 (1206)
+..+.. ......+.+.+ +.+. ..+++-++|+|+++......+..+...+......+.+|+++.. ..+...+
T Consensus 87 v~el~~--~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I 163 (504)
T PRK14963 87 VLEIDA--ASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTI 163 (504)
T ss_pred eEEecc--cccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHH
Confidence 000000 01112222221 2222 2345668999999877766677777666554455566655543 3332222
Q ss_pred -CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 242 -RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 242 -~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
.....+++.+++.++..+.+.+.+...+. ....+.+..|++.++|.+--+
T Consensus 164 ~SRc~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred hcceEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 23457899999999999999887643332 123467888999999988543
No 68
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=4.8e-06 Score=95.67 Aligned_cols=195 Identities=13% Similarity=0.101 Sum_probs=113.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccc--cceeEEEEEcCCCChHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH--FQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~ 165 (1206)
..++||.+..++.|..++.... -.+.+.++|..|+||||+|+.+++..-.... -.... ......-...+
T Consensus 15 FddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~ 85 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACT 85 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHH
Confidence 4579999999999999996543 3467789999999999999998863211000 00000 00000001111
Q ss_pred HHHHh-----ccCCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-h
Q 045303 166 SILES-----IANVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-L 235 (1206)
Q Consensus 166 ~i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~ 235 (1206)
.|... +..........+++.+.+... ..++.-++|||+++..+...+..++..+-....++++|++|.+ .
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11100 000000112233333322221 2355669999999988877777777666554455665555544 4
Q ss_pred HHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 236 VVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 236 ~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
.+...+ .....+.++.++.++..+.+.+.+...+. ....+..+.|++.++|.|...
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 443222 23357899999999999988876532221 122456788999999988543
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=2.9e-06 Score=95.08 Aligned_cols=191 Identities=15% Similarity=0.050 Sum_probs=112.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.-.++||.+..+..|..++.... -.+.+.++|++|+||||+|+.+++..-.. .... ...+..... ...
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~s----C~~ 83 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTS----CLE 83 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcH----HHH
Confidence 34679999999999999886532 23568999999999999999998732111 1000 001111111 111
Q ss_pred HHHhccCC----C-CCCCCHHH---HHHHHHH-HhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hH
Q 045303 167 ILESIANV----T-VDDNNLNS---LQVKLKE-RLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LV 236 (1206)
Q Consensus 167 i~~~l~~~----~-~~~~~~~~---~~~~l~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~ 236 (1206)
+....... . ......++ +.+.+.. ...++.-++|+|+++......+..++..+-.......+|++|.. ..
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 11111000 0 01111222 2222221 12356679999999988877788777666544445555545443 33
Q ss_pred HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch
Q 045303 237 VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL 293 (1206)
Q Consensus 237 ~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 293 (1206)
+...+ .....+.+.+++.++..+.+.+.+...+. .-..+....|++.++|.+-
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi----~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV----QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCChHH
Confidence 33222 23357899999999999988887643221 1234678889999999874
No 70
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=3.4e-06 Score=98.22 Aligned_cols=192 Identities=13% Similarity=0.112 Sum_probs=110.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++..-...... +..+... ...+.+
T Consensus 15 FddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i 82 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQI 82 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHH
Confidence 4679999999999999986532 246789999999999999999886321111000 0000000 000000
Q ss_pred HHh-----ccCCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HH
Q 045303 168 LES-----IANVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VV 237 (1206)
Q Consensus 168 ~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~ 237 (1206)
... +..........+++.+.+... ..+++-++|||+++.........++..+......+++|++|.+. .+
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 000 000001112222222222111 23456689999998766555555655554444566677666543 22
Q ss_pred Hhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 238 AER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 238 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
... ......+.+++++.++..+.+.+.+...+. ....+.+..|++.++|.+.-+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHH
Confidence 211 122346788999999999999877643321 223467888999999988443
No 71
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.39 E-value=7.8e-06 Score=91.55 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=104.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEc--CCCChHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVS--DDFDVPRVTK 165 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~ 165 (1206)
-.+++|+++.++.+..++... ..+.+.|+|++|+|||++|+.+++... ...+. ..++.+. ...... ...
T Consensus 16 ~~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~~ 86 (319)
T PRK00440 16 LDEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VIR 86 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HHH
Confidence 356899999999999998542 334579999999999999999987321 11121 1122221 111111 111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhh-cCC
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAER-MRA 243 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~-~~~ 243 (1206)
+.+..+....+ .....+-++++|+++.........+...+......+++|+++... .+... ...
T Consensus 87 ~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 87 NKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 11111100000 001235689999997665444445544444334456777766432 11111 112
Q ss_pred CCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 244 DPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 244 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
...+++.++++++....+...+...+. .-.++.+..+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 346899999999999988877643321 123467888999999987553
No 72
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.38 E-value=3.3e-07 Score=105.98 Aligned_cols=170 Identities=21% Similarity=0.208 Sum_probs=81.2
Q ss_pred CccceeeccccCCcccccCCCCCCC-CccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEE
Q 045303 993 HHLQKIWIGYCPNLESFPEEGLPST-KLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEV 1071 (1206)
Q Consensus 993 ~~L~~L~L~~n~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L 1071 (1206)
+.+..|++.+|.+.. ++....... +|+.|++++|.+.. +|..+..+++|+.|++++|++....+....++.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchhh-hhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 455555555553332 222333332 55555555554432 233455555555555555555443222235555555555
Q ss_pred eCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCcccc--CCCCCcCcccccccccCCCCC
Q 045303 1072 RGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLS--SIGENLTSLKYLYLIDCPKLK 1149 (1206)
Q Consensus 1072 s~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~--~~~~~l~~L~~L~l~~n~~l~ 1149 (1206)
++|++. .+|. .......|++|.+++ +....++..+..+..+....+.+++... .....++++++|++++| .++
T Consensus 194 s~N~i~-~l~~-~~~~~~~L~~l~~~~--N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n-~i~ 268 (394)
T COG4886 194 SGNKIS-DLPP-EIELLSALEELDLSN--NSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN-QIS 268 (394)
T ss_pred cCCccc-cCch-hhhhhhhhhhhhhcC--CcceecchhhhhcccccccccCCceeeeccchhccccccceeccccc-ccc
Confidence 555554 2332 122333455555543 2233444444444444444444444332 23345555666666655 455
Q ss_pred CCCCCCCccccceecccCCh
Q 045303 1150 YFPEQGLPKSLLQLHIKGCP 1169 (1206)
Q Consensus 1150 ~l~~~~~~~~L~~L~l~~c~ 1169 (1206)
.++..+-..+|+.|+++++.
T Consensus 269 ~i~~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 269 SISSLGSLTNLRELDLSGNS 288 (394)
T ss_pred ccccccccCccCEEeccCcc
Confidence 55543334556666665543
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.38 E-value=4.1e-06 Score=92.67 Aligned_cols=180 Identities=16% Similarity=0.180 Sum_probs=103.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccce-eEEEEEcCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQI-KGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~ 166 (1206)
-.+++|.++.++.|..++... +.+.+.++|++|+||||+|+.+++... ...|.. ++-+..+..... +..++
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~-~~vr~ 83 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGI-DVVRN 83 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccH-HHHHH
Confidence 356899999999888877532 334577999999999999999887321 111211 111111111111 12222
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhhc-CCC
Q 045303 167 ILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM-RAD 244 (1206)
Q Consensus 167 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~~-~~~ 244 (1206)
.++.+..... ..-.++.-++|+|+++..+......+...+......+++|+++... .+...+ ...
T Consensus 84 ~i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 84 KIKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 2221110000 0002345699999998876555445544443334556777766442 221111 123
Q ss_pred CceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 245 PVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 245 ~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
..++++++++++..+.+...+...+. . -..+....|++.++|-.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi-~---i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKV-P---YVPEGLEAIIFTADGDM 194 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCH
Confidence 57899999999999988887643322 1 12466788999998865
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=6.7e-06 Score=90.60 Aligned_cols=199 Identities=16% Similarity=0.159 Sum_probs=116.3
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc--ccceeEEEEEcCCCChHH
Q 045303 85 LVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR--HFQIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 85 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~~~~ 162 (1206)
|.....++|.++..+.+...+.... -...+.|+|+.|+||||+|..+++..-... .+... ..........
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~ 90 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASP 90 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCH
Confidence 4455779999999999999996542 356799999999999999998887321100 01100 0011111112
Q ss_pred HHHHHHHh-------ccCCC-------CCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCC
Q 045303 163 VTKSILES-------IANVT-------VDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGA 223 (1206)
Q Consensus 163 ~~~~i~~~-------l~~~~-------~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~ 223 (1206)
..+.+... +.... ......+++. .+.+.+ .+++-++|+|+++..+......+...+....
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 33333222 10000 0111233332 333333 2456799999998887666666665554433
Q ss_pred CCcEEEEEc-cchHHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 224 AGSKIVVTT-RNLVVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 224 ~~~~iliTt-r~~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
.++.+|++| +...+.... .....+++.+++.++..+++.+.... .. ...+.+..+++.++|.|.....+
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-----~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-----QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-----cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 445544444 433332222 23358999999999999999874311 11 22455778999999999755433
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=8.7e-06 Score=93.61 Aligned_cols=193 Identities=17% Similarity=0.144 Sum_probs=112.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccce-eEEEEEcCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQI-KGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~ 166 (1206)
-.+++|.+..+..|...+.... -.+.+.++|++|+||||+|+.+++..-....... ..+..+... .....
T Consensus 20 f~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~ 90 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCIS 90 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHH
Confidence 4578999999999988775432 3467899999999999999999874211111000 000001110 01111
Q ss_pred HHHhcc-----CCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEE-EccchH
Q 045303 167 ILESIA-----NVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV-TTRNLV 236 (1206)
Q Consensus 167 i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ili-Ttr~~~ 236 (1206)
+..... .........+++...+... ..+++-++|+|+++......+..+...+......+.+|+ ||+...
T Consensus 91 i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~k 170 (507)
T PRK06645 91 FNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQK 170 (507)
T ss_pred HhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHH
Confidence 110000 0000112233333222211 235667899999988777778777766655555666554 444444
Q ss_pred HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch
Q 045303 237 VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL 293 (1206)
Q Consensus 237 ~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 293 (1206)
+...+ .....+++++++.++..+.+...+...+. ....+.+..|++.++|.+-
T Consensus 171 I~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 171 IPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred hhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 44332 23357899999999999999887753321 1234667889999998764
No 76
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1.5e-05 Score=88.42 Aligned_cols=198 Identities=13% Similarity=0.048 Sum_probs=114.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEE---EEEcCCCChHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGW---TCVSDDFDVPRV 163 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~w---v~~~~~~~~~~~ 163 (1206)
...+++|.++..+.|.+.+.... -...+.++|+.|+||+++|..+++..-.......... .........-..
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 44679999999999999986542 3457899999999999999888763211110000000 000000000011
Q ss_pred HHHHHHhc-------cCC--C-----CCCCCHHHHHHHHHHHhC-----CCceEEEEeCCCccCHhhHHhhhccCCCCCC
Q 045303 164 TKSILESI-------ANV--T-----VDDNNLNSLQVKLKERLS-----GKKFLLVLDDVWNENYIRWSELRCPFVAGAA 224 (1206)
Q Consensus 164 ~~~i~~~l-------~~~--~-----~~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~ 224 (1206)
.+.+...- ... . ......+++ ..+.+.+. +++.++|+|+++..+......+...+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 12221110 000 0 011123332 23333332 4567999999988887777777666655445
Q ss_pred CcEEEEEccch-HHHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 225 GSKIVVTTRNL-VVAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 225 ~~~iliTtr~~-~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
++.+|++|... .+... ......+.+.+++.++..+++.+.... .. .+....+++.++|.|.....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 66677777654 33222 223467999999999999999875311 11 122367899999999865444
No 77
>PRK08727 hypothetical protein; Validated
Probab=98.34 E-value=8.2e-06 Score=85.29 Aligned_cols=148 Identities=16% Similarity=0.093 Sum_probs=86.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
..+.|+|.+|+|||+|++.+++. .......+.|+...+ ....+. +.+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 56999999999999999999874 222223455555322 111111 1111 11 233
Q ss_pred eEEEEeCCCccC-HhhHHhhhccCCC--CCCCcEEEEEccchH---------HHhhcCCCCceeCCCCChhhHHHHHHHh
Q 045303 197 FLLVLDDVWNEN-YIRWSELRCPFVA--GAAGSKIVVTTRNLV---------VAERMRADPVYQLKKLSDDDCLCVLTQI 264 (1206)
Q Consensus 197 ~LlvlDdv~~~~-~~~~~~l~~~l~~--~~~~~~iliTtr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l~~~~ 264 (1206)
-+||+||++... ...|......+.. ...+..||+|++... +..++.....+++++++.++-.+++.+.
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 589999996432 1223322212222 124667999998632 1223334467899999999999999987
Q ss_pred hhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 265 SLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
+...+- .-..++..-|++.++|-.-.+
T Consensus 175 a~~~~l----~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRGL----ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcCC----CCCHHHHHHHHHhCCCCHHHH
Confidence 643221 223466777888887655444
No 78
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=1.6e-05 Score=91.92 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=111.9
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.-.+++|++..++.+..++.... -.+.+.++|+.|+||||+|+.+++...... |.... ....-...+.
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~ 81 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCES 81 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHH
Confidence 34679999999999999886532 346788999999999999999987321111 11100 0011112222
Q ss_pred HHHhccC-----CCCCCCCHHHHHHH---HHHH-hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-cchH
Q 045303 167 ILESIAN-----VTVDDNNLNSLQVK---LKER-LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLV 236 (1206)
Q Consensus 167 i~~~l~~-----~~~~~~~~~~~~~~---l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r~~~ 236 (1206)
+...... ........+++... +... ..+++-++|+|+++..+...+..+...+-.....+.+|++| ....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 2111000 00001122222221 1110 12334479999998776666666665554444455555554 3333
Q ss_pred HHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHHHh
Q 045303 237 VAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTLGG 300 (1206)
Q Consensus 237 ~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 300 (1206)
+... ......+++.++++++....+...+...+. ....+.+..+++.++|.+ .|+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3322 223457899999999999888876643221 122466788999999965 45554443
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.33 E-value=3.5e-06 Score=82.38 Aligned_cols=125 Identities=18% Similarity=0.071 Sum_probs=71.1
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 92 YGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 92 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
+||+..++++...+... ..+.+.|+|++|+|||++|+++++... ..-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47889999998888542 346899999999999999999997432 112334555544332221111111100
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC---HhhHHhhhccCCCC---CCCcEEEEEccchH
Q 045303 172 ANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN---YIRWSELRCPFVAG---AAGSKIVVTTRNLV 236 (1206)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~~~~~l~~~l~~~---~~~~~iliTtr~~~ 236 (1206)
............++.++|+||++... ...+.......... ..+..||+|+....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 00111122234567899999998542 22222222222221 35778888887643
No 80
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.32 E-value=6.9e-06 Score=86.28 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=88.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 194 (1206)
..+.+.|+|.+|+|||+||+.+++... ... ....+++..... .. + .. ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~------------------~~-~~ 89 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F------------------DF-DP 89 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H------------------hh-cc
Confidence 346789999999999999999987421 111 123344332210 00 0 01 12
Q ss_pred CceEEEEeCCCccCHhhHHhhhccCCCC-CCCc-EEEEEccchHHHh--------hcCCCCceeCCCCChhhHHHHHHHh
Q 045303 195 KKFLLVLDDVWNENYIRWSELRCPFVAG-AAGS-KIVVTTRNLVVAE--------RMRADPVYQLKKLSDDDCLCVLTQI 264 (1206)
Q Consensus 195 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~-~~~~-~iliTtr~~~~~~--------~~~~~~~~~l~~l~~~e~~~l~~~~ 264 (1206)
..-++|+||++..+...-..+...+... ..+. .+|+|++...... .+.....+++.++++++-.+++.+.
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~ 169 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAA 169 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHH
Confidence 3347899999754422222333222211 1233 4677766533211 2223357899999999877777765
Q ss_pred hhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhh
Q 045303 265 SLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL 302 (1206)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 302 (1206)
+...+ -.-.+++.+.+++...|.+..+..+...+
T Consensus 170 ~~~~~----v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 170 AAERG----LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 43221 12234678888899999999887776554
No 81
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=1.8e-05 Score=93.11 Aligned_cols=196 Identities=15% Similarity=0.096 Sum_probs=113.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.-.++||.+..++.|...+.... -.+.+.++|+.|+||||+|+.+++..-....+. ......-...+.
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~ 81 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCRE 81 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHH
Confidence 34679999999999999886532 235678999999999999999987321111000 000000112222
Q ss_pred HHHhcc-----CCCCCCCCHHHHHHHHHH----HhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hH
Q 045303 167 ILESIA-----NVTVDDNNLNSLQVKLKE----RLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LV 236 (1206)
Q Consensus 167 i~~~l~-----~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~ 236 (1206)
|...-. .........+++.+.+.. -..+++-++|||+++.........++..+-.....+++|++|.+ ..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 211000 000001122222222111 12456679999999988777777776666554456666555554 33
Q ss_pred HHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHH
Q 045303 237 VAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTL 298 (1206)
Q Consensus 237 ~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 298 (1206)
+... ......+.+++++.++..+.+.+.+...+ -....+....|++.++|.+- |+..+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~----i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ----IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3322 12346789999999999999887653222 11234667889999999775 44444
No 82
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.30 E-value=1.2e-05 Score=83.10 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=95.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
.+...+.+||++|+||||||+.+....+-.. ..+|..+......+-+++++++-. -...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq---------------~~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ---------------NEKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH---------------HHHhhh
Confidence 3667889999999999999999987432222 456666665544455555555431 113356
Q ss_pred CCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEE--EccchHH---HhhcCCCCceeCCCCChhhHHHHHHHhhh--
Q 045303 194 GKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV--TTRNLVV---AERMRADPVYQLKKLSDDDCLCVLTQISL-- 266 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ili--Ttr~~~~---~~~~~~~~~~~l~~l~~~e~~~l~~~~~~-- 266 (1206)
++|.+|++|.|..-...+-+. .++....|.-++| ||.++.. ...+....++.+++|..++...++.+...
T Consensus 221 krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l 297 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL 297 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence 789999999996543333222 2344445665555 5655432 22234456899999999999998887432
Q ss_pred -CCC---CCCCC---hhhHHHHHHHHHhcCCcc
Q 045303 267 -GAR---DFTRH---QSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 267 -~~~---~~~~~---~~~~~~~~~i~~~~~g~P 292 (1206)
..+ +..+. .-...+.+-++..|.|-.
T Consensus 298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 111 11111 123455666777777764
No 83
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.30 E-value=3.2e-05 Score=87.97 Aligned_cols=183 Identities=16% Similarity=0.123 Sum_probs=109.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc--------------------ccc
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR--------------------HFQ 147 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~--------------------~f~ 147 (1206)
-.+++|.+..++.+.+++.... -.+.+.++|++|+|||++|+.++....... +++
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~ 87 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD 87 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4578999999999999886432 346788999999999999988876321110 111
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCc
Q 045303 148 IKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKER-LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGS 226 (1206)
Q Consensus 148 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~ 226 (1206)
..++........ +..++ +.+.+... ..+++-++|+|+++.........+...+......+
T Consensus 88 -~~~~~~~~~~~~-~~~~~-----------------l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 88 -VIEIDAASNNGV-DDIRE-----------------ILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred -EEEeeccccCCH-HHHHH-----------------HHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 111111100000 01111 11111110 12445589999997765555566665554444566
Q ss_pred EEEEEccchH-HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 227 KIVVTTRNLV-VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 227 ~iliTtr~~~-~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
.+|++|.+.. +...+ .....+++.++++++..+++...+...+. ...++.+..+++.++|.|..+...
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHH
Confidence 6666665433 22222 22357888999999999998876643221 122467888999999988655443
No 84
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=2.1e-05 Score=91.37 Aligned_cols=195 Identities=13% Similarity=0.089 Sum_probs=110.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.++||.+..++.|..++.... -.....++|++|+||||+|+.+++..-....... -.++. -...+.|
T Consensus 15 f~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~----C~~C~~i 82 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA---NPCND----CENCREI 82 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc---ccCCC----CHHHHHH
Confidence 4679999999999999996542 2456789999999999999988873211111100 00000 0111111
Q ss_pred HHhc-----cCCCCCCCCHHHHHHHHHH----HhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHH
Q 045303 168 LESI-----ANVTVDDNNLNSLQVKLKE----RLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVV 237 (1206)
Q Consensus 168 ~~~l-----~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~ 237 (1206)
...- ..........++..+.+.. -..++.-++|+|+++..+......+...+......+++|++|.+ ..+
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl 162 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKL 162 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhc
Confidence 0000 0000011222222222111 11345668999999887766666666655554456766665544 333
Q ss_pred Hhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHH
Q 045303 238 AERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTL 298 (1206)
Q Consensus 238 ~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 298 (1206)
...+ .....+++++++.++..+.+...+...+. ....+.+..|++.++|-+- |+..+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al~lL 221 (509)
T PRK14958 163 PVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDALSLL 221 (509)
T ss_pred hHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 2221 22356889999999988877766533221 1224567789999999775 44433
No 85
>PF14516 AAA_35: AAA-like domain
Probab=98.29 E-value=0.00016 Score=79.98 Aligned_cols=203 Identities=14% Similarity=0.104 Sum_probs=119.1
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-----CCh
Q 045303 86 VTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-----FDV 160 (1206)
Q Consensus 86 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~ 160 (1206)
.+.+..|+|...-+++.+.+.+.+ ..+.|.|+-.+|||+|..++.+..+. ..| .++++++... .+.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~-~~~-~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQ-QGY-RCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHH-CCC-EEEEEEeecCCCcccCCH
Confidence 345567899977888888886533 48999999999999999998874322 233 3456665542 245
Q ss_pred HHHHHHHHHhccCCCCC-----------CCCHHHHHHHHHHHh---CCCceEEEEeCCCccCH-----hhHHhhhccCCC
Q 045303 161 PRVTKSILESIANVTVD-----------DNNLNSLQVKLKERL---SGKKFLLVLDDVWNENY-----IRWSELRCPFVA 221 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~-----------~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~-----~~~~~l~~~l~~ 221 (1206)
.++++.++..+...-.- ..........+.+.+ .+++.+|+||+++..-. .++-.+...+-.
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 55555555444322110 111222233344432 26899999999975321 122221111111
Q ss_pred C------CCCcEEEEEcc-chHHHhh-----cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcC
Q 045303 222 G------AAGSKIVVTTR-NLVVAER-----MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCG 289 (1206)
Q Consensus 222 ~------~~~~~iliTtr-~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 289 (1206)
. ...-++++... ....... ..-...++|++|+.+|+.+|+...-.. .. ....++|...+|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tg 230 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTG 230 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHC
Confidence 0 11122222222 1111111 112247899999999999998876321 11 233889999999
Q ss_pred CcchHHHHHHhhhCCC
Q 045303 290 GLPLAAKTLGGLLRGR 305 (1206)
Q Consensus 290 g~Plal~~~~~~l~~~ 305 (1206)
|+|.-+..++..+...
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999998654
No 86
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.29 E-value=5.1e-08 Score=102.56 Aligned_cols=228 Identities=18% Similarity=0.268 Sum_probs=126.8
Q ss_pred CCCCcceeeeccCCChhhh---cccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCcc
Q 045303 860 SSTSLESLAIGRCDSLTYI---ARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLA 936 (1206)
Q Consensus 860 ~~~~L~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~ 936 (1206)
.+++|+++++..|..+++. .....+++|+.|.+++|+.... ........++.. ++.+...+|..+.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~----~gv~~~~rG~~~-------l~~~~~kGC~e~~ 256 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG----NGVQALQRGCKE-------LEKLSLKGCLELE 256 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc----CcchHHhccchh-------hhhhhhccccccc
Confidence 3455555555555555543 1223445555555555554333 111112223322 2223333454332
Q ss_pred --ccccCCCCccccceEEecccCCcccchhh---cCCCCcceeeeccccCcCccc--ccccCCCccceeeccccCCcccc
Q 045303 937 --FLTRNGNLPQALKYLGVESCSKLESLAER---LDNTSLEEITILNLENLKSLP--AGLHNLHHLQKIWIGYCPNLESF 1009 (1206)
Q Consensus 937 --~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~ 1009 (1206)
.+-.....-..+..+++..|..++....+ .....|++|+.++|...+..+ ..-.++++|+.|.++.|+..+..
T Consensus 257 le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~ 336 (483)
T KOG4341|consen 257 LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR 336 (483)
T ss_pred HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh
Confidence 11112222235666777777776654322 234778888888888766443 22356789999999998765432
Q ss_pred --cCCCCCCCCccEEEeccccCccc--cccccCCCCccCeeeeecCCCCccC-----CC-CCCCCCcCeEEEeCcCCCCC
Q 045303 1010 --PEEGLPSTKLTELTIWDCENLKA--LPNCMHNLTSLLDLDIRGCPSVVSF-----PE-DGFPTNLQSLEVRGLKISKP 1079 (1206)
Q Consensus 1010 --~~~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~-----~~-~~~~~~L~~L~Ls~n~l~~~ 1079 (1206)
...-.+++.|+.+++..|..... +-..-.+++.|+.|.+++|...... .. ......|+.|.|+++..+..
T Consensus 337 ~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 337 GFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 22234578899999988865432 2222247888999999988766543 11 15667888888988876522
Q ss_pred CCccCCCCCCCcceEEeec
Q 045303 1080 LPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1080 ~p~~~~~~l~~L~~L~ls~ 1098 (1206)
---..+..+++|+.+++.+
T Consensus 417 ~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 417 ATLEHLSICRNLERIELID 435 (483)
T ss_pred HHHHHHhhCcccceeeeec
Confidence 2222344555666655543
No 87
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=1.9e-06 Score=80.83 Aligned_cols=118 Identities=20% Similarity=0.175 Sum_probs=75.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
+++.|.|+.|+||||++++++.+.. ....++++............ .+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 6899999999999999999987422 22345566554432110000 00 2233334344477
Q ss_pred eEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHhh-c-----CCCCceeCCCCChhh
Q 045303 197 FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAER-M-----RADPVYQLKKLSDDD 256 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~-~-----~~~~~~~l~~l~~~e 256 (1206)
.+++||++... .+|......+....++.+|++|+........ . +....+++.||+-.|
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 89999999665 4777776667666567899999998655422 1 122467889998776
No 88
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=1.9e-05 Score=88.39 Aligned_cols=190 Identities=11% Similarity=0.009 Sum_probs=107.4
Q ss_pred CccccchhHHHHHHHHHhcCCC----CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNL----RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~----~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
.+++|.+..++.|..++..... ....-.+.+.++|++|+|||++|+.++...-.... . +..++.. ...
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~--~--~~~Cg~C----~~C 76 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDP--D--EPGCGEC----RAC 76 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCC--C--CCCCCCC----HHH
Confidence 4689999999999999976431 00013567889999999999999998763111100 0 0000000 111
Q ss_pred HHHHHhcc------CCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEcc
Q 045303 165 KSILESIA------NVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTR 233 (1206)
Q Consensus 165 ~~i~~~l~------~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr 233 (1206)
+.+...-. .........+++.+ +.+.+ .+++-++|+|+++.........+...+.....++.+|++|.
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~-l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRE-LVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHH-HHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 11110000 00001112222222 22221 24556888999988776665666655544445666666665
Q ss_pred ch-HHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 234 NL-VVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 234 ~~-~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
+. .+...+ .....+.+.+++.++..+.+.+... . ..+.+..+++.++|.|....
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~---~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------V---DPETARRAARASQGHIGRAR 211 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------C---CHHHHHHHHHHcCCCHHHHH
Confidence 53 333222 2346889999999999988875321 1 13557789999999986443
No 89
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.2e-05 Score=92.22 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=108.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.++||.+.....|...+.... -.+.+.++|++|+||||+|+.+++......... +..+. .-.....+
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~---~~pc~----~c~~c~~i 80 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKG---VEPCN----ECRACRSI 80 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCCCc----ccHHHHHH
Confidence 4679999998888888775432 235688999999999999999986321110000 00000 00000000
Q ss_pred HHhc-----cCCCCCCCCHHHHHHHHHHH-----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hH
Q 045303 168 LESI-----ANVTVDDNNLNSLQVKLKER-----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LV 236 (1206)
Q Consensus 168 ~~~l-----~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~ 236 (1206)
...- ..........+++. .+.+. ..+++-++|+|+++.......+.+...+........+|++|.. ..
T Consensus 81 ~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~k 159 (472)
T PRK14962 81 DEGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEK 159 (472)
T ss_pred hcCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHh
Confidence 0000 00000011122221 12221 2345679999999766544555555555443344554444433 33
Q ss_pred HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCC-cchHHHHHHhh
Q 045303 237 VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGG-LPLAAKTLGGL 301 (1206)
Q Consensus 237 ~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 301 (1206)
+...+ .....+++.+++.++....+.+.+...+. .-.++++..|++.++| .+.|+..+-..
T Consensus 160 l~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 160 VPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred hhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 33322 23457899999999999988887643221 2234667888887764 56777766553
No 90
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.27 E-value=1.2e-05 Score=80.85 Aligned_cols=266 Identities=17% Similarity=0.184 Sum_probs=138.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+|||.++..+++.-.+..+.. ..+..--|.++|++|.||||||.-+++. ....+. ++.+....-..-+..+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaai 97 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAI 97 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHH
Confidence 46799999999988777765543 3456778999999999999999999883 322222 1111111111111112
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccC--------CCCCCC-----------cEE
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPF--------VAGAAG-----------SKI 228 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l--------~~~~~~-----------~~i 228 (1206)
+..+ .+.-++++|.++......-+.+..++ ...+++ +-|
T Consensus 98 Lt~L----------------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 98 LTNL----------------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred HhcC----------------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2211 22335666776554322212121111 111222 235
Q ss_pred EEEccchHHHhhcC--CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCC
Q 045303 229 VVTTRNLVVAERMR--ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD 306 (1206)
Q Consensus 229 liTtr~~~~~~~~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~ 306 (1206)
=.|||.-.+...+. -..+.+++..+.+|-.++..+.+..-. -+-.++.+.+|+++..|-|--..-+-+..+.
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-- 229 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIANRLLRRVRD-- 229 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHHHHHHHHHHH--
Confidence 56888754433222 224578899999999999988763221 2223577899999999999544333333321
Q ss_pred ChhHHHHHHhhhccccCCC---CchHHHHHhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCCCCHH
Q 045303 307 DPRDWEFVLKNDIWNLRDS---DILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKME 383 (1206)
Q Consensus 307 ~~~~w~~~~~~~~~~~~~~---~v~~~l~~s~~~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~ 383 (1206)
+..+.... ..... .....|..--..|+...+..+..+.-...+-.+..+.+.. +-| ....+.|
T Consensus 230 ----fa~V~~~~--~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~---~lg-----e~~~TiE 295 (332)
T COG2255 230 ----FAQVKGDG--DIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAA---ALG-----EDRDTIE 295 (332)
T ss_pred ----HHHHhcCC--cccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHH---Hhc-----CchhHHH
Confidence 11111000 00000 0111222222445555555555554322222333333221 111 1234667
Q ss_pred HHHHHHHHHHHhCCccccccCC
Q 045303 384 DLGREFVRELHSRSLFQQSSKG 405 (1206)
Q Consensus 384 ~~~~~~l~~L~~~~ll~~~~~~ 405 (1206)
|+.+-| |++.|+++....|
T Consensus 296 dv~EPy---Liq~gfi~RTpRG 314 (332)
T COG2255 296 DVIEPY---LIQQGFIQRTPRG 314 (332)
T ss_pred HHHhHH---HHHhchhhhCCCc
Confidence 777666 7899999998766
No 91
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.7e-05 Score=90.34 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=112.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccccc--ceeEEEEEcCCCChHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~ 165 (1206)
-.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-..... .....-.+ ..-...+
T Consensus 15 f~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pC----g~C~~C~ 85 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPC----GVCQACR 85 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCC----CccHHHH
Confidence 4679999999999999886542 34677999999999999999987532111000 00000000 1111122
Q ss_pred HHHHhc-----cCCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-h
Q 045303 166 SILESI-----ANVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-L 235 (1206)
Q Consensus 166 ~i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~ 235 (1206)
.|...- ..........+++.+.+... ..++.-++|||+++..+...+..+...+......+++|++|.+ .
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ 165 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQ 165 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCch
Confidence 221100 00000112233332222211 1244558999999988877777777666554456666655533 3
Q ss_pred HHHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 236 VVAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 236 ~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
.+... ......+++++++.++..+.+.+.+...+. ....+.+..|++.++|-+-.+
T Consensus 166 kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 166 KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 33322 223467899999999999998877643321 122466788999999877443
No 92
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.25 E-value=3.4e-06 Score=92.06 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=28.3
Q ss_pred CCCcceeeccCCCCccccCCCCCcCcccccccccCCCC-CCCCCCCCccccceecccCChhhH
Q 045303 1111 ASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKL-KYFPEQGLPKSLLQLHIKGCPLIE 1172 (1206)
Q Consensus 1111 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l-~~l~~~~~~~~L~~L~l~~c~~l~ 1172 (1206)
.+|+.|.+.+|......+.+| .+|+.|+++.|... ..++...+|+++ .|++.+|..+.
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP---~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP---ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred CcccEEEecCCCcccCccccc---ccCcEEEecccccccccCccccccccc-EechhhhcccC
Confidence 345555555554433322233 46666666654211 123334455666 66666664443
No 93
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3.6e-05 Score=87.77 Aligned_cols=178 Identities=16% Similarity=0.124 Sum_probs=110.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccc-------------------cccc
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-------------------RHFQ 147 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-------------------~~f~ 147 (1206)
.-.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.++...-.. +.+.
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 34679999999999888885432 24588999999999999999887521000 0111
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCC
Q 045303 148 IKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGA 223 (1206)
Q Consensus 148 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~ 223 (1206)
.++.+..+.. ...+++.+.+... ..+++-++|+|+++..+......+...+-...
T Consensus 86 Dv~eidaas~---------------------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp 144 (491)
T PRK14964 86 DVIEIDAASN---------------------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA 144 (491)
T ss_pred CEEEEecccC---------------------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC
Confidence 1222222211 1222222211111 13456689999998777666666666665555
Q ss_pred CCcEEEEEcc-chHHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchH
Q 045303 224 AGSKIVVTTR-NLVVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLA 294 (1206)
Q Consensus 224 ~~~~iliTtr-~~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 294 (1206)
+.+++|++|. ...+...+ .....+++.+++.++..+.+.+.+...+. ...++.+..|++.++|.+-.
T Consensus 145 ~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 145 PHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred CCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 5666666554 33443322 23467899999999999999887643322 22346778899999997753
No 94
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.23 E-value=2.9e-05 Score=78.77 Aligned_cols=90 Identities=17% Similarity=0.184 Sum_probs=63.0
Q ss_pred CCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCC
Q 045303 194 GKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDF 271 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~ 271 (1206)
+.+-++|+||++......++.+...+......+.+|++|++. .+...+ .....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456689999998776666666766665545566777777653 222221 23357999999999999988876 1
Q ss_pred CCChhhHHHHHHHHHhcCCcch
Q 045303 272 TRHQSLKEVGEQIVIKCGGLPL 293 (1206)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~g~Pl 293 (1206)
...+.++.|++.++|.|.
T Consensus 169 ----i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 ----ISEEAAELLLALAGGSPG 186 (188)
T ss_pred ----CCHHHHHHHHHHcCCCcc
Confidence 114678899999999885
No 95
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=3.7e-05 Score=83.05 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=112.1
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 86 VTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 86 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
..+..++||+.+++.+.+++..... ....+.+.|.|.+|.|||.+...++.+......=..++++.+..-....+++.
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3466799999999999999976543 34567899999999999999999987533222212456676666567788888
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCC--CceEEEEeCCCccCHhhHHhhhccCCC-CCCCcEEEEEccchHH-----
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERLSG--KKFLLVLDDVWNENYIRWSELRCPFVA-GAAGSKIVVTTRNLVV----- 237 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~~~~iliTtr~~~~----- 237 (1206)
.|...+...........+....+...... ..+|+|+|.++......-..+...|.+ .-+++++|+..--..+
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 88877732222222223444444444433 368999999965321122223223322 2356666555432111
Q ss_pred -HhhcC-----CCCceeCCCCChhhHHHHHHHhhh
Q 045303 238 -AERMR-----ADPVYQLKKLSDDDCLCVLTQISL 266 (1206)
Q Consensus 238 -~~~~~-----~~~~~~l~~l~~~e~~~l~~~~~~ 266 (1206)
...+. ....+..+|.+.++..+++..+.-
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~ 339 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS 339 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 11111 224678899999999999998864
No 96
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.7e-06 Score=68.60 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=52.8
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccC
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCEN 1029 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 1029 (1206)
++|++|++++|.+...-+..|.++++|++|++++|.+....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888876665567889999999999999988887788999999999999999974
No 97
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.8e-05 Score=89.96 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=110.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+..++.|..++.... -.+.+.++|++|+||||+|+.+++..-...... .-.++. -.....+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pcg~----C~~C~~i 82 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT---ATPCGV----CSACLEI 82 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCCC----CHHHHHH
Confidence 4578999999999999986532 245678999999999999999976321110000 000000 0011111
Q ss_pred HHh-----ccCCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHH
Q 045303 168 LES-----IANVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVV 237 (1206)
Q Consensus 168 ~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~ 237 (1206)
... +..........+++.+.+... ..+++-++|+|+++..+......+...+......+.+|++|.+ ..+
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ki 162 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKI 162 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhC
Confidence 000 000000011222222211111 1355679999999887766666666666554455666655544 322
Q ss_pred Hhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHHH
Q 045303 238 AER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTLG 299 (1206)
Q Consensus 238 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 299 (1206)
... ......+++++++.++..+.+.+.+...+. ....+.+..|++.++|.+- |+..+-
T Consensus 163 l~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 163 PVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred chhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 211 112357899999999999888776532221 1234667889999999774 444443
No 98
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.20 E-value=5.7e-08 Score=102.19 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=17.5
Q ss_pred CccEEEEcccCCCCCCC----CCCCCCCceeeecCCC
Q 045303 705 KLARLELRLCMSTSLPS----VGQLPFLKELDISGMD 737 (1206)
Q Consensus 705 ~L~~L~L~~~~~~~l~~----l~~l~~L~~L~L~~~~ 737 (1206)
.|+.|.+.+|.-....+ ...+|++++|.+.+|.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~ 175 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK 175 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcce
Confidence 35666666665522221 2455666666666555
No 99
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.18 E-value=5.4e-05 Score=78.96 Aligned_cols=204 Identities=16% Similarity=0.103 Sum_probs=124.7
Q ss_pred Cccccch---hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccc----cceeEEEEEcCCCChH
Q 045303 89 PKVYGRE---KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 89 ~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~ 161 (1206)
+.+||-. +.++++.+++..+. ..+.+.+.|+|.+|.|||++++++.+.+-.... --.++.+.+-..++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~ 110 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDER 110 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChH
Confidence 4455543 44566666665543 456778999999999999999999864321111 1146667777888999
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC-CceEEEEeCCCccC------HhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSG-KKFLLVLDDVWNEN------YIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~------~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
.+...|+.+++...............+.+.++. +.-+||+|++.+.- +...-.....+.+.-.-+-|.+-|+.
T Consensus 111 ~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 111 RFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 999999999998776666666666555566643 34589999996521 11111222233333345567777765
Q ss_pred hHHHhh-----cCCCCceeCCCCChhhH-HHHHHHhhhC--CCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 235 LVVAER-----MRADPVYQLKKLSDDDC-LCVLTQISLG--ARDFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 235 ~~~~~~-----~~~~~~~~l~~l~~~e~-~~l~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
..-+-. ...+..+.++....++- ..|+...... -.. ...-...+.+..|.+.++|+.=-+.
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHH
Confidence 332211 12345677777766544 4444332211 111 1222346788999999999874443
No 100
>PRK09087 hypothetical protein; Validated
Probab=98.18 E-value=3.3e-05 Score=79.85 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=87.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
.+.+.|+|++|+|||+|++.++.... ..+++.. .+..++...+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~- 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE- 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc-
Confidence 35789999999999999998886321 1122221 1111111111 11
Q ss_pred ceEEEEeCCCcc--CHhhHHhhhccCCCCCCCcEEEEEccch---------HHHhhcCCCCceeCCCCChhhHHHHHHHh
Q 045303 196 KFLLVLDDVWNE--NYIRWSELRCPFVAGAAGSKIVVTTRNL---------VVAERMRADPVYQLKKLSDDDCLCVLTQI 264 (1206)
Q Consensus 196 ~~LlvlDdv~~~--~~~~~~~l~~~l~~~~~~~~iliTtr~~---------~~~~~~~~~~~~~l~~l~~~e~~~l~~~~ 264 (1206)
-+|++||++.. ++..+..+...+.. .|..+|+|++.. .+..++.....++++++++++-.+++.+.
T Consensus 89 -~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 -GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred -CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 27888999643 22333333322222 467799988742 23334455578999999999999999988
Q ss_pred hhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHh
Q 045303 265 SLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGG 300 (1206)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 300 (1206)
+.... . .-.+++..-|++.+.|..-++..+..
T Consensus 166 ~~~~~-~---~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 166 FADRQ-L---YVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHcC-C---CCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 74422 1 22347778888888887776664433
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.18 E-value=5.9e-06 Score=84.11 Aligned_cols=184 Identities=18% Similarity=0.162 Sum_probs=112.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEE-EEcCCCChHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWT-CVSDDFDVPRVTK 165 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv-~~~~~~~~~~~~~ 165 (1206)
..++++|.+..++.|...+... .......+|++|.|||+.|..+++..-....|++++.- +++...... +.+
T Consensus 34 t~de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 34 TFDELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred cHHhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh
Confidence 3467999999999999999752 45688999999999999999988743333445544431 222221111 111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh--CCCc-eEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHHHhh-
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERL--SGKK-FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVAER- 240 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~~~~- 240 (1206)
+=. .+.+.+.....+.. ..++ -++|||+++......|..++..+-.....++.|..+-. ..+...
T Consensus 107 ~Ki----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 EKI----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hhh----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 000 01111100000000 1123 37899999999999999988877776666665555443 222111
Q ss_pred cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc
Q 045303 241 MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL 291 (1206)
Q Consensus 241 ~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 291 (1206)
.....-+..++|.+++.+.-++..+-..+. +...++.+.|++.++|-
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGD 223 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCc
Confidence 112235788999999999988887744332 23356788899999884
No 102
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.18 E-value=2.8e-05 Score=81.40 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=89.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
.+.+.|+|++|+|||+|++.+++.. ...-..+.++.+..... ...+..+.+. +
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~--~~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~-----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAEL--SQRGRAVGYVPLDKRAW--------------------FVPEVLEGME-----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEEHHHHhh--------------------hhHHHHHHhh-----h
Confidence 3578999999999999999888732 22222344554432100 0011111111 1
Q ss_pred ceEEEEeCCCccC-HhhHHhhh-ccCCCC-CCC-cEEEEEccchH---------HHhhcCCCCceeCCCCChhhHHHHHH
Q 045303 196 KFLLVLDDVWNEN-YIRWSELR-CPFVAG-AAG-SKIVVTTRNLV---------VAERMRADPVYQLKKLSDDDCLCVLT 262 (1206)
Q Consensus 196 ~~LlvlDdv~~~~-~~~~~~l~-~~l~~~-~~~-~~iliTtr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l~~ 262 (1206)
--++++||++... ...|+... ..+... ..| .++|+||+... +..++....+++++++++++-.+++.
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQ 177 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHH
Confidence 2488999996532 12444322 111111 123 47999998642 22334455789999999999999988
Q ss_pred HhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHh
Q 045303 263 QISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGG 300 (1206)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 300 (1206)
+.+...+ . .-.+++..-|++.+.|..-++..+-.
T Consensus 178 ~~a~~~~-~---~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 178 LRARLRG-F---ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHcC-C---CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 7664322 1 22347778888888877655554443
No 103
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.9e-08 Score=97.64 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=82.2
Q ss_pred ccceeeccccccc--cccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCcccCCcCccccCCc
Q 045303 525 HLRCLNLSRTRIQ--ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGR 602 (1206)
Q Consensus 525 ~L~~L~Ls~n~i~--~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~ 602 (1206)
.|++||||+..|+ .+..-+..+.+|+.|.|.++.....+...+.+-.+|+.|+++.+..+...
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n--------------- 250 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN--------------- 250 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh---------------
Confidence 4666666666655 34444555666666666666444444455666666666666665511110
Q ss_pred eEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCcc
Q 045303 603 FVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQ 682 (1206)
Q Consensus 603 ~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~ 682 (1206)
+..--+.+++.|.+|+++|+...... .......+ -++|+
T Consensus 251 -------------------------------------~~~ll~~scs~L~~LNlsWc~l~~~~--Vtv~V~hi--se~l~ 289 (419)
T KOG2120|consen 251 -------------------------------------ALQLLLSSCSRLDELNLSWCFLFTEK--VTVAVAHI--SETLT 289 (419)
T ss_pred -------------------------------------HHHHHHHhhhhHhhcCchHhhccchh--hhHHHhhh--chhhh
Confidence 00111445566677777776654321 11111111 24677
Q ss_pred EEEEEecCCCCCCCCcC--CCCCCCccEEEEcccCC---CCCCCCCCCCCCceeeecCCCC
Q 045303 683 ELTITGYGGTKFPSWLG--DSSFSKLARLELRLCMS---TSLPSVGQLPFLKELDISGMDG 738 (1206)
Q Consensus 683 ~L~l~~~~~~~~p~~~~--~~~~~~L~~L~L~~~~~---~~l~~l~~l~~L~~L~L~~~~~ 738 (1206)
.|+++|+...-..+.+. ...+++|.+|+|++|.. +-+..+.+++.|++|.++.|+.
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence 77777764321111110 01466777777776654 2223456667777777776664
No 104
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=3.2e-05 Score=88.04 Aligned_cols=200 Identities=14% Similarity=0.123 Sum_probs=112.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEE-cCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCV-SDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~ 166 (1206)
-.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.......+....|... ..+...-...+.
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~ 89 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRD 89 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHH
Confidence 4579999999999988886432 2356889999999999999998863221111110001100 000000111122
Q ss_pred HHHhccC-----CCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-cch
Q 045303 167 ILESIAN-----VTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNL 235 (1206)
Q Consensus 167 i~~~l~~-----~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r~~ 235 (1206)
+...... ........+++.+ +.+.+ .+++-++|+|+++..+...+..+...+....+.+.+|++| +..
T Consensus 90 ~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 90 FDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 2111000 0001112333333 22222 2455688999998777667777766665554566666555 433
Q ss_pred HHHhhcC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHH
Q 045303 236 VVAERMR-ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKT 297 (1206)
Q Consensus 236 ~~~~~~~-~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 297 (1206)
.+...+. ....+++.++++++..+.+...+...+ ..-..+.++.|++.++|.+- |+..
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3332211 224688999999999888887653221 12335778899999999774 4443
No 105
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.17 E-value=1.1e-05 Score=97.18 Aligned_cols=173 Identities=23% Similarity=0.278 Sum_probs=97.5
Q ss_pred CCccccchhHHH---HHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKE---KIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
-.+|+|++..+. .+...+.. ++...+.|+|++|+||||+|+.+++. ....|. .+.......
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~-----~lna~~~~i--- 90 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS-----SLNAVLAGV--- 90 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce-----eehhhhhhh---
Confidence 356899998774 45555532 24457789999999999999999873 333331 111100000
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh--CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEE--ccchH--HH
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERL--SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVT--TRNLV--VA 238 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliT--tr~~~--~~ 238 (1206)
.+..+......+.+ .+++.++|+||++......++.+...+. .+..++|+ |.+.. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111112222222 2467799999998766555555553332 24444543 34321 21
Q ss_pred hhc-CCCCceeCCCCChhhHHHHHHHhhhCCCC---CCCChhhHHHHHHHHHhcCCcch
Q 045303 239 ERM-RADPVYQLKKLSDDDCLCVLTQISLGARD---FTRHQSLKEVGEQIVIKCGGLPL 293 (1206)
Q Consensus 239 ~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Pl 293 (1206)
... .....+.+++++.++..+++.+.+..... ...-.-.+++.+.|++.+.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 22457899999999999999876531000 01112234667888888888643
No 106
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=0.0001 Score=85.96 Aligned_cols=198 Identities=15% Similarity=0.151 Sum_probs=114.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-....... .....-...+.+
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i 82 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKV 82 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHH
Confidence 4578999999888888886432 2467889999999999999999874221110000 000001111111
Q ss_pred HHhccC-----CCCCCCCHHHHHHHHHHH-----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hH
Q 045303 168 LESIAN-----VTVDDNNLNSLQVKLKER-----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LV 236 (1206)
Q Consensus 168 ~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~ 236 (1206)
...... ........+++.. +.+. ..+++-++|+|+++..+...+..+...+........+|++|.. ..
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred hcCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 111000 0000111222221 2221 2355679999999887766666676665443345555555544 33
Q ss_pred HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHHHhhh
Q 045303 237 VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTLGGLL 302 (1206)
Q Consensus 237 ~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~~l 302 (1206)
+...+ .....+++++++.++..+.+...+...+. .-..+.++.|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33221 22357899999999999988876643221 123467888999999954 6777766544
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=4.5e-05 Score=89.90 Aligned_cols=197 Identities=14% Similarity=0.107 Sum_probs=113.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccc--eeEEEEEcCCCChHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--IKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~ 164 (1206)
...+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++..-...... ...+..+.. -...
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~----c~~C 92 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV----GEHC 92 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc----cHHH
Confidence 34679999999999999986532 345788999999999999999987421111100 000000111 1111
Q ss_pred HHHHHhccC-----CCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-cc
Q 045303 165 KSILESIAN-----VTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RN 234 (1206)
Q Consensus 165 ~~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r~ 234 (1206)
+.+...-.. ........+++.+.+... ..+++-++|+|+++.........+...+-.....+.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 222211100 000112233322221111 12445589999998777666666666655544566665555 43
Q ss_pred hHHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 235 LVVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 235 ~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
..+...+ .....++++++++++..+.+.+.+...+. ....+.++.|++.++|.+.-+.
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 3333222 23357899999999999999887643221 1224677889999999886543
No 108
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.15 E-value=2.4e-05 Score=93.49 Aligned_cols=202 Identities=18% Similarity=0.129 Sum_probs=109.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccccc---ceeEEEEEcCC---CChH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIKGWTCVSDD---FDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~---~~~~ 161 (1206)
.++++|++..+.++.+.+... ....+.|+|++|+||||+|+.++........+ ...-|+.+... .+..
T Consensus 153 ~~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~ 226 (615)
T TIGR02903 153 FSEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR 226 (615)
T ss_pred HHhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH
Confidence 356899999999988877432 34579999999999999999987643222222 12334444321 1222
Q ss_pred HHHHHH---------------HHhccCCC----------------CCC-CCHHHHHHHHHHHhCCCceEEEEeCCCccCH
Q 045303 162 RVTKSI---------------LESIANVT----------------VDD-NNLNSLQVKLKERLSGKKFLLVLDDVWNENY 209 (1206)
Q Consensus 162 ~~~~~i---------------~~~l~~~~----------------~~~-~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~ 209 (1206)
.+...+ +...+... ++. .-....+..+.+.+.++++.++-|+.|..+.
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDP 306 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCc
Confidence 221111 11111000 000 0112345667777777777777666666555
Q ss_pred hhHHhhhccCCCCCCCcEEEE--EccchH-HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHH
Q 045303 210 IRWSELRCPFVAGAAGSKIVV--TTRNLV-VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIV 285 (1206)
Q Consensus 210 ~~~~~l~~~l~~~~~~~~ili--Ttr~~~-~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 285 (1206)
..|+.+...+....+...++| ||++.. +...+ .....+.+.+++.+|.++++.+.+..... . -.+++.+.|.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~---ls~eal~~L~ 382 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-H---LAAGVEELIA 382 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHH
Confidence 556666554444444444554 556432 11111 12246788999999999999987642211 1 1134445555
Q ss_pred HhcCCcchHHHHHH
Q 045303 286 IKCGGLPLAAKTLG 299 (1206)
Q Consensus 286 ~~~~g~Plal~~~~ 299 (1206)
+.+..-+-|+..++
T Consensus 383 ~ys~~gRraln~L~ 396 (615)
T TIGR02903 383 RYTIEGRKAVNILA 396 (615)
T ss_pred HCCCcHHHHHHHHH
Confidence 55443344554443
No 109
>PRK05642 DNA replication initiation factor; Validated
Probab=98.13 E-value=3.5e-05 Score=80.60 Aligned_cols=156 Identities=22% Similarity=0.216 Sum_probs=90.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
...+.|+|.+|+|||.|++.+++. ....-..++|++.. ++... .. .+.+.+.+-
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~--~~~~~~~v~y~~~~------~~~~~--------------~~----~~~~~~~~~ 98 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR--FEQRGEPAVYLPLA------ELLDR--------------GP----ELLDNLEQY 98 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCcEEEeeHH------HHHhh--------------hH----HHHHhhhhC
Confidence 367899999999999999998763 22222345555442 22111 01 122222222
Q ss_pred ceEEEEeCCCccC-HhhHHh-hhccCCC-CCCCcEEEEEccchHH---------HhhcCCCCceeCCCCChhhHHHHHHH
Q 045303 196 KFLLVLDDVWNEN-YIRWSE-LRCPFVA-GAAGSKIVVTTRNLVV---------AERMRADPVYQLKKLSDDDCLCVLTQ 263 (1206)
Q Consensus 196 ~~LlvlDdv~~~~-~~~~~~-l~~~l~~-~~~~~~iliTtr~~~~---------~~~~~~~~~~~l~~l~~~e~~~l~~~ 263 (1206)
-++|+||+.... ...|.. +..-+.. ...|.++|+|++.... ..++.....+++++++.++-.++++.
T Consensus 99 -d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 99 -ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred -CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 278899996432 124433 2222211 1246778998875321 12223345788999999999999986
Q ss_pred hhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhh
Q 045303 264 ISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL 302 (1206)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 302 (1206)
++...+ .. -.+++..-|++.+.|-.-++..+-..|
T Consensus 178 ka~~~~-~~---l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRG-LH---LTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcC-CC---CCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 654322 11 224777888888888766555444333
No 110
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.11 E-value=2.1e-05 Score=88.80 Aligned_cols=181 Identities=14% Similarity=0.087 Sum_probs=100.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLR-------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
...++.|++++++++.+.+...-.. +-..++-+.++|++|+|||++|+.++.. ....| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch---
Confidence 3456899999999999887532110 1123567999999999999999999873 33333 11211
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC-----------H---hhHHhhhccCC--CCC
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN-----------Y---IRWSELRCPFV--AGA 223 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~---~~~~~l~~~l~--~~~ 223 (1206)
.++...... .........+...-...+.+|++|+++... . ..+..+...+. ...
T Consensus 190 -~~l~~~~~g---------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 190 -SELVRKYIG---------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred -HHHHHHhhh---------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 111111110 001111112222223467899999986431 0 11222222221 113
Q ss_pred CCcEEEEEccchHHH-hh----cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 224 AGSKIVVTTRNLVVA-ER----MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 224 ~~~~iliTtr~~~~~-~~----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
.+.+||.||...... .. ..-...+.+...+.++..++|...+..... ... .....+++.+.|..
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~----~~~~~la~~t~g~s 328 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AED----VDLEAIAKMTEGAS 328 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-Ccc----CCHHHHHHHcCCCC
Confidence 467788888754321 11 122457889999999999999887643221 111 12456777787764
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=7.4e-05 Score=88.45 Aligned_cols=194 Identities=14% Similarity=0.118 Sum_probs=109.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+..++.|..++.... -.+.+.++|+.|+|||++|+.++...-..... ..+-.+.. ....
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~--~~~~pC~~-------C~~~ 82 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKT--DLLEPCQE-------CIEN 82 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccC--CCCCchhH-------HHHh
Confidence 4578999999999999996532 34677899999999999999998631110000 00000000 0000
Q ss_pred HH-h---ccCCCCCCCCHHH---HHHHHHHH-hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEE-EEccchHHH
Q 045303 168 LE-S---IANVTVDDNNLNS---LQVKLKER-LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIV-VTTRNLVVA 238 (1206)
Q Consensus 168 ~~-~---l~~~~~~~~~~~~---~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~il-iTtr~~~~~ 238 (1206)
.. . +..........++ +.+.+... ..+++-++|+|+++......+..+...+-.....+.+| +|++...+.
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00 0 0000000111222 22222111 13566699999998777666777665554444455544 454444443
Q ss_pred hh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHHH
Q 045303 239 ER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTLG 299 (1206)
Q Consensus 239 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 299 (1206)
.. ......+++.+++.++..+.+...+...+. ....+++..|++.++|-+ .|+..+-
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 223458999999999999888876533221 122456788999998866 4444443
No 112
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.00011 Score=83.44 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=103.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccc------cccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ------RHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~------~~f~~~~wv~~~~~~~~~ 161 (1206)
-.+++|.+...+.+..++.... -.+.+.++|++|+|||++|+.+++..... ..|...+ +.....
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~---- 85 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA---- 85 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc----
Confidence 4578999999999999986432 34688999999999999999987632110 1111111 011100
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHH----HhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEcc-chH
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKE----RLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTR-NLV 236 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr-~~~ 236 (1206)
.....+++...+.+ -..+++-++|+|+++......+..+...+......+.+|+++. ...
T Consensus 86 ---------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 86 ---------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred ---------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 01111222211111 0123455899999976655556665544433334455555553 322
Q ss_pred HHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch
Q 045303 237 VAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL 293 (1206)
Q Consensus 237 ~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 293 (1206)
+... ......++++++++++....+...+...+. .-..++++.+++.++|.+-
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALR 204 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHH
Confidence 2221 123357899999999999888876643321 1224678888999998654
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.00014 Score=85.29 Aligned_cols=198 Identities=13% Similarity=0.075 Sum_probs=113.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.++...-...... +..++.. ...+.+
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i 79 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVAL 79 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHh
Confidence 4679999999999999986532 345678999999999999999986321111000 0001110 111111
Q ss_pred HHh-------ccCCCCCCCCHHHH---HHHHHHH-hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-cch
Q 045303 168 LES-------IANVTVDDNNLNSL---QVKLKER-LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNL 235 (1206)
Q Consensus 168 ~~~-------l~~~~~~~~~~~~~---~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r~~ 235 (1206)
... +..........++. .+.+... ..+++-++|+|+++..+......++..+......+.+|++| ...
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred hcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 100 00000011122222 2222111 13455689999998877777777766665554566655555 433
Q ss_pred HHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHHHhh
Q 045303 236 VVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTLGGL 301 (1206)
Q Consensus 236 ~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 301 (1206)
.+...+ .....+++.+++.++..+.+...+...+. ....+.+..|++.++|-+- |+..+-..
T Consensus 160 kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 160 KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 333222 23467999999999999888876643221 1224567788999999764 55555443
No 114
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.05 E-value=9e-05 Score=76.42 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=94.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccc--eeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--IKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERL 192 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 192 (1206)
....+.|+|..|+|||.|.+++++. ...... .+++++ ..++...+...+.. ...+ .++..+
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~--~~~~~~~~~v~y~~------~~~f~~~~~~~~~~-----~~~~----~~~~~~ 95 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANE--AQKQHPGKRVVYLS------AEEFIREFADALRD-----GEIE----EFKDRL 95 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHH--HHHHCTTS-EEEEE------HHHHHHHHHHHHHT-----TSHH----HHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH--HHhccccccceeec------HHHHHHHHHHHHHc-----ccch----hhhhhh
Confidence 4456899999999999999999973 222221 344443 34566666665543 1222 233444
Q ss_pred CCCceEEEEeCCCccCH-hhHHhhhccCCC--CCCCcEEEEEccchH---------HHhhcCCCCceeCCCCChhhHHHH
Q 045303 193 SGKKFLLVLDDVWNENY-IRWSELRCPFVA--GAAGSKIVVTTRNLV---------VAERMRADPVYQLKKLSDDDCLCV 260 (1206)
Q Consensus 193 ~~~~~LlvlDdv~~~~~-~~~~~l~~~l~~--~~~~~~iliTtr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l 260 (1206)
. .-=+|++||++.... ..|......+.. ...|.+||+|++... +..++.....++++++++++..++
T Consensus 96 ~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i 174 (219)
T PF00308_consen 96 R-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI 174 (219)
T ss_dssp C-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred h-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence 4 334889999976432 223332212111 124678999996532 223334556799999999999999
Q ss_pred HHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 045303 261 LTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLG 299 (1206)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 299 (1206)
+.+.+...+- . -.++++.-|++.+.+..-.+..+-
T Consensus 175 l~~~a~~~~~-~---l~~~v~~~l~~~~~~~~r~L~~~l 209 (219)
T PF00308_consen 175 LQKKAKERGI-E---LPEEVIEYLARRFRRDVRELEGAL 209 (219)
T ss_dssp HHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHH
T ss_pred HHHHHHHhCC-C---CcHHHHHHHHHhhcCCHHHHHHHH
Confidence 9988754332 1 234677778888777665555443
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=5.9e-05 Score=90.20 Aligned_cols=195 Identities=14% Similarity=0.135 Sum_probs=112.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++......... .......-...+.+
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i 83 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAI 83 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHH
Confidence 4579999999999988886432 245678999999999999999986321110000 00001111223333
Q ss_pred HHhccCC-----CCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hH
Q 045303 168 LESIANV-----TVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LV 236 (1206)
Q Consensus 168 ~~~l~~~-----~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~ 236 (1206)
....... .......+++.+ +.+.+ .+++-++|+|+++.........+...+......+.+|+++.. ..
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~-ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDARE-IIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 2211110 001122222222 21211 245668999999876655566666555444455666665543 23
Q ss_pred HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 237 VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 237 ~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
+...+ .....+.+++++.++..+.+...+...+. ....+.+..|++.++|.+..+...
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32221 23357889999999999888877643221 122467889999999988654433
No 116
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=4.1e-05 Score=90.36 Aligned_cols=201 Identities=14% Similarity=0.096 Sum_probs=111.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEE-cCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCV-SDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~ 166 (1206)
-.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++..-.....+...|... ......-...+.
T Consensus 15 f~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~ 89 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRD 89 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHH
Confidence 4679999999999999885432 2456889999999999999988863211111100011100 000000111111
Q ss_pred HHHhccC-----CCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-cchH
Q 045303 167 ILESIAN-----VTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLV 236 (1206)
Q Consensus 167 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r~~~ 236 (1206)
+...-.. ........+++...+... ..+++-++|+|+++..+......+...+-.....+.+|++| +...
T Consensus 90 ~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~k 169 (620)
T PRK14954 90 FDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (620)
T ss_pred HhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 1110000 000112234443322222 23455588999998877666666666655544455555444 4333
Q ss_pred HHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHH
Q 045303 237 VAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKT 297 (1206)
Q Consensus 237 ~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~ 297 (1206)
+... ......+++.+++.++....+.+.+...+. .-..+.++.|++.++|..- |+..
T Consensus 170 Ll~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi----~I~~eal~~La~~s~Gdlr~al~e 228 (620)
T PRK14954 170 IPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI----QIDADALQLIARKAQGSMRDAQSI 228 (620)
T ss_pred hhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHH
Confidence 3322 223467899999999988888776532221 1234678889999999553 4443
No 117
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.04 E-value=3e-05 Score=96.12 Aligned_cols=182 Identities=15% Similarity=0.113 Sum_probs=96.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccc------cceeEE-EEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH------FQIKGW-TCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~------f~~~~w-v~~~~~~~~ 160 (1206)
-++++||+.++.++++.|.... ..-+.++|++|+|||++|+.++.. +... ....+| +..+.-
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l--- 254 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL--- 254 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh---
Confidence 3579999999999999996543 235569999999999999999873 2111 112222 222110
Q ss_pred HHHHHHHHHhccCCCCCCCCHH-HHHHHHHHHh-CCCceEEEEeCCCccC-------HhhHHhhhccCCCCCCCcEEEEE
Q 045303 161 PRVTKSILESIANVTVDDNNLN-SLQVKLKERL-SGKKFLLVLDDVWNEN-------YIRWSELRCPFVAGAAGSKIVVT 231 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l-~~~~~LlvlDdv~~~~-------~~~~~~l~~~l~~~~~~~~iliT 231 (1206)
........+.+ .+...+...- .+++.+|++|+++... ..+...+..+....+ .-++|-|
T Consensus 255 -----------~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~Iga 322 (852)
T TIGR03345 255 -----------QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAA 322 (852)
T ss_pred -----------hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEe
Confidence 00000011111 1111122211 2468999999986532 112122333333322 3456666
Q ss_pred ccchHHHh-------hcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 232 TRNLVVAE-------RMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 232 tr~~~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
|...+... ..+....+.+++++.+++.++++.....-.....-.-..++...+++.+.++.
T Consensus 323 TT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 323 TTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred cCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 65533211 11234589999999999999975543211110111122455566666665544
No 118
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00023 Score=82.36 Aligned_cols=189 Identities=12% Similarity=0.086 Sum_probs=106.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc--ccc-cceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV--QRH-FQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~--~~~-f~~~~wv~~~~~~~~~~~~ 164 (1206)
-.+++|.+..++.+..++.... -.+...++|+.|+||||+|+.++...-. ... .++.. . ...
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~------c----~nc 79 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK------C----ENC 79 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc------c----HHH
Confidence 3578999999999999996532 2456778999999999999998763110 000 00000 0 000
Q ss_pred HHHHH----hc-cCCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-c
Q 045303 165 KSILE----SI-ANVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-R 233 (1206)
Q Consensus 165 ~~i~~----~l-~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r 233 (1206)
..+.. .+ ..........++.. .+.+.. .+++-++|+|+++.........+...+........+|++| +
T Consensus 80 ~~i~~g~~~d~~eidaas~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred HHHhcCCCCcEEEEeCccCCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 00000 00 00000111122111 122221 3456699999998776555566655554444455555544 4
Q ss_pred chHHHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 234 NLVVAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 234 ~~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
...+... ......+.+.+++.++..+.+...+...+. ....+.+..|++.++|.+..+.
T Consensus 159 ~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 159 YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 3333322 123357899999999999888876643321 1234667889999999765443
No 119
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.02 E-value=1.1e-05 Score=84.10 Aligned_cols=91 Identities=22% Similarity=0.162 Sum_probs=62.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC--CChHHHHHHHHHhccCCCCCCCCHH------HHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD--FDVPRVTKSILESIANVTVDDNNLN------SLQV 186 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 186 (1206)
+...++|.|++|+|||||++.++++.... +|+..+|+.+.+. .++.++++.+...+.....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44688999999999999999999864433 8899999987766 7889999998444432222221111 1111
Q ss_pred HHHHH-hCCCceEEEEeCCCc
Q 045303 187 KLKER-LSGKKFLLVLDDVWN 206 (1206)
Q Consensus 187 ~l~~~-l~~~~~LlvlDdv~~ 206 (1206)
..... -.++++++++|++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHH
Confidence 12211 257899999999944
No 120
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00011 Score=89.94 Aligned_cols=190 Identities=13% Similarity=0.073 Sum_probs=111.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.++||.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++........... .+... ...+.+
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~ 81 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVAL 81 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHH
Confidence 4579999999999999986532 23567899999999999999998742211110000 00000 011111
Q ss_pred HHh-------ccCCCCCCCCHHHHHHHHHH-----HhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-
Q 045303 168 LES-------IANVTVDDNNLNSLQVKLKE-----RLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN- 234 (1206)
Q Consensus 168 ~~~-------l~~~~~~~~~~~~~~~~l~~-----~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~- 234 (1206)
... +..........+++.+ +++ -..++.-++|||+++..+...+..|+..+-.....+.+|++|.+
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~-l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARE-LRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 110 0000001112333322 221 12355568999999988877777777666655556666655543
Q ss_pred hHHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchH
Q 045303 235 LVVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLA 294 (1206)
Q Consensus 235 ~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 294 (1206)
..+...+ .....|+++.++.++..+++.+.+...+. ....+.+..|++.++|.+..
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 3343322 23467899999999998888776532221 12245677899999997743
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00014 Score=83.55 Aligned_cols=183 Identities=13% Similarity=0.126 Sum_probs=107.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccc----ccee--------------
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIK-------------- 149 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~-------------- 149 (1206)
-.+++|.+..++.+..++.... -.+.+.++|++|+|||++|+.+++..-.... -.+.
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 4679999999999999986432 2467889999999999999988763211100 0000
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHH---HHH-HHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCC
Q 045303 150 GWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQV---KLK-ERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAG 225 (1206)
Q Consensus 150 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~-~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~ 225 (1206)
-|+.+... .....+++.. .+. ....+++-++|+|+++.........+...+......
T Consensus 91 d~~~i~g~-------------------~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 91 DVLEIDGA-------------------SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred ceEEeecc-------------------ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 01111100 0111122211 111 111256678999999776654555555555444456
Q ss_pred cEEEEEccc-hHHHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHH
Q 045303 226 SKIVVTTRN-LVVAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTL 298 (1206)
Q Consensus 226 ~~iliTtr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 298 (1206)
+.+|++|.. ..+... ......+++.++++++..+.+...+...+. ....+.+..|++.++|.+ .|+..+
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~----~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI----ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666666543 222222 123357899999999999888876533221 123467888999999965 444443
No 122
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=0.00017 Score=83.10 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=111.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+...+.|..++.... -.++..++|+.|+||||+|+.+++..-.....+. .+...-.....+
T Consensus 13 fdeiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~ 80 (535)
T PRK08451 13 FDELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSA 80 (535)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHH
Confidence 4679999999999999885432 3457789999999999999988763110000000 000000000000
Q ss_pred HHhcc-----CCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HH
Q 045303 168 LESIA-----NVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VV 237 (1206)
Q Consensus 168 ~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~ 237 (1206)
..... .........+++.+.+... ..+++-++|+|+++..+......++..+-.....+++|++|.+. .+
T Consensus 81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160 (535)
T ss_pred hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence 00000 0000011233333333221 12455689999998877666666666665545567777666553 22
Q ss_pred Hhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 238 AER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 238 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
... ......+++.+++.++..+.+...+...+. ...++.++.|++.++|-+--+.
T Consensus 161 ~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred chHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHH
Confidence 211 122457899999999999988876643321 1234678889999999885443
No 123
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=1e-06 Score=101.72 Aligned_cols=100 Identities=23% Similarity=0.332 Sum_probs=70.5
Q ss_pred hccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccce
Q 045303 496 LNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 575 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 575 (1206)
+..++.|+.|++.+| .+..+...+..+.+|++|++++|.|+.+.. +..++.|+.|++++| .+..+ ..+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N-~i~~~-~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGN-LISDI-SGLESLKSLKL 166 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccC-cchhc-cCCccchhhhc
Confidence 566788888888888 777776557778888888888888887744 667777888888888 56655 34666888888
Q ss_pred eecCCCCccccCCcc-cCCcCccccC
Q 045303 576 LRNSNADELEEMPKG-FGKLTCLLTL 600 (1206)
Q Consensus 576 L~l~~n~~~~~~p~~-~~~l~~L~~L 600 (1206)
+++++|. +..+... ...+.+++.+
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHH
Confidence 8888887 4444432 2444444444
No 124
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=2.4e-05 Score=85.56 Aligned_cols=138 Identities=30% Similarity=0.554 Sum_probs=81.2
Q ss_pred CCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEE
Q 045303 991 NLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLE 1070 (1206)
Q Consensus 991 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~ 1070 (1206)
.+..+..|++++| .+..+|. -..+|++|.+++|.....+|+.+ .++|+.|++++|.....+ +++|+.|+
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL-----PESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc-----ccccceEE
Confidence 4677888888888 4555552 12468888888877777677544 356777777777433322 34566666
Q ss_pred EeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCCCCc-CcccccccccCCCCC
Q 045303 1071 VRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIGENL-TSLKYLYLIDCPKLK 1149 (1206)
Q Consensus 1071 Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~l~ 1149 (1206)
++++... .+..+| .+|+.|.+.+...+.. ...+..+ ++|++|++++|..+
T Consensus 119 L~~n~~~------------------------~L~~LP---ssLk~L~I~~~n~~~~-~~lp~~LPsSLk~L~Is~c~~i- 169 (426)
T PRK15386 119 IKGSATD------------------------SIKNVP---NGLTSLSINSYNPENQ-ARIDNLISPSLKTLSLTGCSNI- 169 (426)
T ss_pred eCCCCCc------------------------ccccCc---chHhheeccccccccc-cccccccCCcccEEEecCCCcc-
Confidence 6544322 222223 2444444432211111 1111122 68999999999755
Q ss_pred CCCCCCCccccceecccCCh
Q 045303 1150 YFPEQGLPKSLLQLHIKGCP 1169 (1206)
Q Consensus 1150 ~l~~~~~~~~L~~L~l~~c~ 1169 (1206)
.+| ..+|.+|+.|+++.|.
T Consensus 170 ~LP-~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 170 ILP-EKLPESLQSITLHIEQ 188 (426)
T ss_pred cCc-ccccccCcEEEecccc
Confidence 355 3478999999998764
No 125
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.95 E-value=0.00015 Score=83.28 Aligned_cols=170 Identities=12% Similarity=0.091 Sum_probs=100.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
..-+.|+|..|+|||+|++++++.......-..+++++ ..++...+...+.... .....+++.+. +
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-c
Confidence 35689999999999999999987321111112233332 3466677666654210 11223333333 3
Q ss_pred ceEEEEeCCCccCH-hhHH-hhhccCCC-CCCCcEEEEEccchH---------HHhhcCCCCceeCCCCChhhHHHHHHH
Q 045303 196 KFLLVLDDVWNENY-IRWS-ELRCPFVA-GAAGSKIVVTTRNLV---------VAERMRADPVYQLKKLSDDDCLCVLTQ 263 (1206)
Q Consensus 196 ~~LlvlDdv~~~~~-~~~~-~l~~~l~~-~~~~~~iliTtr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l~~~ 263 (1206)
.-+||+||+..... ..+. .+...+.. ...+..||+|+.... +..++.....+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 44889999965431 1222 22222211 123457888876532 222333445788999999999999998
Q ss_pred hhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhh
Q 045303 264 ISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGL 301 (1206)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 301 (1206)
.+...+- . ..-.++++.-|++.++|.|-.+..+...
T Consensus 287 ~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 287 EIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 8743221 0 1234578889999999999877665543
No 126
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.94 E-value=0.00014 Score=77.86 Aligned_cols=161 Identities=11% Similarity=0.090 Sum_probs=81.3
Q ss_pred ccccchhHHHHHHHHHhc---------CCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 90 KVYGREKEKEKIIELLLN---------DNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.++|.+...+++.+.... ......+...-+.++|++|+||||+|+.++......+......++.+..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~---- 82 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER---- 82 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH----
Confidence 578988877666543211 1111123456788999999999999999976311011111112222221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC--------HhhHHhhhccCCCCCCCcEEEEEc
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN--------YIRWSELRCPFVAGAAGSKIVVTT 232 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~~~~iliTt 232 (1206)
.++. .... ........+.+... ..-+|++|+++... ....+.+...+........+|+++
T Consensus 83 ~~l~----~~~~-----g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 83 ADLV----GEYI-----GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred HHhh----hhhc-----cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 1110 01111222222221 23489999997522 112233443333333344556665
Q ss_pred cchHHH------hhc-C-CCCceeCCCCChhhHHHHHHHhhh
Q 045303 233 RNLVVA------ERM-R-ADPVYQLKKLSDDDCLCVLTQISL 266 (1206)
Q Consensus 233 r~~~~~------~~~-~-~~~~~~l~~l~~~e~~~l~~~~~~ 266 (1206)
...+.. +.+ . -...+.+++++.+|-.+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 433221 111 1 124578999999999999987764
No 127
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=1.2e-06 Score=101.18 Aligned_cols=98 Identities=29% Similarity=0.393 Sum_probs=72.4
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
.+..++.+.+..| .+..+-..++.+++|.+|++.+|.|+.+...+..+++|++|++++| .+..+ .++..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKL-EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccc-cchhhccchhhhe
Confidence 4555666667777 6666545578889999999999999988776788999999999999 67666 4578888899999
Q ss_pred cCCCCccccCCcccCCcCccccC
Q 045303 578 NSNADELEEMPKGFGKLTCLLTL 600 (1206)
Q Consensus 578 l~~n~~~~~~p~~~~~l~~L~~L 600 (1206)
+.+|. +..+. ++..++.|+.+
T Consensus 147 l~~N~-i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 147 LSGNL-ISDIS-GLESLKSLKLL 167 (414)
T ss_pred eccCc-chhcc-CCccchhhhcc
Confidence 99998 44332 23334444444
No 128
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.93 E-value=8.2e-05 Score=91.85 Aligned_cols=157 Identities=17% Similarity=0.190 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc---ccccc-ceeEEEEEcCCCChHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHF-QIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 164 (1206)
++++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +...+ ...+|. + +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHH-
Confidence 579999999999999886542 23457999999999999999987321 11111 223332 1 11111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh-CCCceEEEEeCCCccC--------HhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERL-SGKKFLLVLDDVWNEN--------YIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
... . ....+.++....+.+.+ ..++.+|++|+++... ..+...+..+....+ .-++|-+|...
T Consensus 250 ---~a~---~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~ 321 (731)
T TIGR02639 250 ---LAG---T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYE 321 (731)
T ss_pred ---hhh---c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHH
Confidence 100 0 00112222222333333 3467899999996321 011122222333322 23445544432
Q ss_pred HHH------hh-cCCCCceeCCCCChhhHHHHHHHhh
Q 045303 236 VVA------ER-MRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 236 ~~~------~~-~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
+.. .. .+....+.+++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 221 11 1234578999999999999998654
No 129
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00039 Score=69.67 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=106.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEE-cCCCChHHHHHHHHHhccCCCCCCCCHHHHH----HHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCV-SDDFDVPRVTKSILESIANVTVDDNNLNSLQ----VKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~----~~l~ 189 (1206)
+.+++.++|.-|+|||.+++..... ..+ +.++-+.+ ....+...+...+...+... ......... ..+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s--~~~--d~~~~v~i~~~~~s~~~~~~ai~~~l~~~--p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLAS--LNE--DQVAVVVIDKPTLSDATLLEAIVADLESQ--PKVNVNAVLEQIDRELA 123 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHh--cCC--CceEEEEecCcchhHHHHHHHHHHHhccC--ccchhHHHHHHHHHHHH
Confidence 4469999999999999999955432 111 11222333 33456677888888877662 223333333 3333
Q ss_pred HHh-CCCc-eEEEEeCCCccCHhhHHhhhccC--CC-CCCCcEEEEEccchH-------HHhhc-CCCCc-eeCCCCChh
Q 045303 190 ERL-SGKK-FLLVLDDVWNENYIRWSELRCPF--VA-GAAGSKIVVTTRNLV-------VAERM-RADPV-YQLKKLSDD 255 (1206)
Q Consensus 190 ~~l-~~~~-~LlvlDdv~~~~~~~~~~l~~~l--~~-~~~~~~iliTtr~~~-------~~~~~-~~~~~-~~l~~l~~~ 255 (1206)
... +++| ..+++|++........+.++... .. ....-+|+......- +.... ..... |++.|++.+
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 333 4566 89999999776655555443221 11 111122343332210 11111 11223 899999999
Q ss_pred hHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhh
Q 045303 256 DCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGL 301 (1206)
Q Consensus 256 e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~ 301 (1206)
+...+++....+... ..+-...+....|.....|.|.+|+.++..
T Consensus 204 ~t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 204 ETGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999988766532 333334567788999999999999877643
No 130
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=0.0004 Score=74.71 Aligned_cols=162 Identities=14% Similarity=0.045 Sum_probs=83.6
Q ss_pred ccccchhHHHHHHHHHh---c------CCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 90 KVYGREKEKEKIIELLL---N------DNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~---~------~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
+++|-+...+++.++.. - ...........+.++|++|+|||++|+.++......+.-...-|+.++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~---- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR---- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----
Confidence 57888777665544421 1 0100112234588999999999999999976321111111112444431
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCcc---------CHhhHHhhhccCCCCCCCcEEEEE
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNE---------NYIRWSELRCPFVAGAAGSKIVVT 231 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~~~~iliT 231 (1206)
.++ ...+.+.. .......+... ..-+|++|+++.. .......+...+.....+.+||++
T Consensus 100 ~~l----~~~~~g~~-----~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~a 167 (287)
T CHL00181 100 DDL----VGQYIGHT-----APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFA 167 (287)
T ss_pred HHH----HHHHhccc-----hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 122 22221111 11122222222 2349999999642 111222333333334456677777
Q ss_pred ccchHHHhhc--------CCCCceeCCCCChhhHHHHHHHhhhC
Q 045303 232 TRNLVVAERM--------RADPVYQLKKLSDDDCLCVLTQISLG 267 (1206)
Q Consensus 232 tr~~~~~~~~--------~~~~~~~l~~l~~~e~~~l~~~~~~~ 267 (1206)
+......... +-...+.+++++.+|..+++...+..
T Consensus 168 g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 7543322111 12347899999999999998887643
No 131
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.92 E-value=2.6e-05 Score=84.26 Aligned_cols=91 Identities=21% Similarity=0.180 Sum_probs=60.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC--ChHHHHHHHHHhccCCCCCCCCHHHH------HH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF--DVPRVTKSILESIANVTVDDNNLNSL------QV 186 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~------~~ 186 (1206)
+-.-..|+|++|+||||||++++++.... +|+..+||.+.+.. ++.++.+.+...+.....+....... .+
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 44577899999999999999999864433 89999999998886 67777777764332222222111111 11
Q ss_pred HHHHH-hCCCceEEEEeCCCc
Q 045303 187 KLKER-LSGKKFLLVLDDVWN 206 (1206)
Q Consensus 187 ~l~~~-l~~~~~LlvlDdv~~ 206 (1206)
..... -.+++++|++|++..
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHH
Confidence 11111 357999999999943
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0002 Score=85.39 Aligned_cols=191 Identities=13% Similarity=0.116 Sum_probs=108.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+...+.|..++.... -.+.+.++|+.|+||||+|+.++...-....-. -...++.. ...+.+
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~--~~~~Cg~C----~sC~~~ 84 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA--DGEACNEC----ESCVAF 84 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC--CCCCCCcc----hHHHHH
Confidence 4579999999999999986532 346788999999999999988876321100000 00000000 000000
Q ss_pred HHh--c---cCCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-cchHH
Q 045303 168 LES--I---ANVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLVV 237 (1206)
Q Consensus 168 ~~~--l---~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r~~~~ 237 (1206)
-.. . ..........+++...+... ..+++-++|+|+++......+..+...+......+.+|++| +...+
T Consensus 85 ~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kI 164 (614)
T PRK14971 85 NEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKI 164 (614)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhc
Confidence 000 0 00000111223333222111 12345588999998877667777776665544556655544 44444
Q ss_pred Hhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch
Q 045303 238 AERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL 293 (1206)
Q Consensus 238 ~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 293 (1206)
...+ .....+++.++++++....+.+.+...+. ....+.+..|++.++|-.-
T Consensus 165 l~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 165 LPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMR 217 (614)
T ss_pred hHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHH
Confidence 3322 23457899999999999888876543221 1223567889999998654
No 133
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.91 E-value=1.4e-06 Score=90.03 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=61.4
Q ss_pred HHHHhccCCceeEEEecCCCCccc-----CCccccCccccceeeccccc---c-cccccc-------ccccccccEEecC
Q 045303 492 LKMLLNHLPRLRVFSLCGYSNIFS-----LPNEIGNLKHLRCLNLSRTR---I-QILPES-------INSLYNLHTILLE 555 (1206)
Q Consensus 492 ~~~~~~~~~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~Ls~n~---i-~~lp~~-------~~~L~~L~~L~L~ 555 (1206)
.......+..++.++|+|| .+.. +-..+.+.++|+.-+++.-- . ..+|+. +...++|++||||
T Consensus 22 v~~~~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 3445778899999999999 4432 33456777899999998632 2 255554 4566788999998
Q ss_pred CCccccccccc----ccCCCccceeecCCCC
Q 045303 556 DCWKLKKLCKD----MGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 556 ~n~~~~~lp~~----~~~L~~L~~L~l~~n~ 582 (1206)
.|-.-..-+.. +..+..|++|.|.+|.
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 88443333332 4567888888888876
No 134
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.89 E-value=0.00054 Score=80.66 Aligned_cols=192 Identities=14% Similarity=0.044 Sum_probs=112.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.+++..-...... ...+.... ..+.+
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~----~C~~i 82 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECS----SCKSI 82 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccch----HHHHH
Confidence 4579999999999999996532 346788999999999999999987421111000 00011110 01111
Q ss_pred HHhc--c---CCCCCCCCHHHHHHHH---HH-HhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHH
Q 045303 168 LESI--A---NVTVDDNNLNSLQVKL---KE-RLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVV 237 (1206)
Q Consensus 168 ~~~l--~---~~~~~~~~~~~~~~~l---~~-~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~ 237 (1206)
...- . .........+++.... .. -..+++-++|+|+++..+...+..+...+-.....+.+|++|.. ..+
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL 162 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKL 162 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHh
Confidence 1100 0 0000112233332222 11 12356668999999887766777777666554456666665543 333
Q ss_pred Hhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 238 AERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 238 ~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
...+ .....+++++++.++..+.+.+.+...+. ...++.+..|++.++|.+-.+
T Consensus 163 ~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 163 PATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 3222 23346899999999999888877643321 223467788999999977533
No 135
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1e-05 Score=58.12 Aligned_cols=33 Identities=36% Similarity=0.500 Sum_probs=17.4
Q ss_pred ccceeeccccccccccccccccccccEEecCCC
Q 045303 525 HLRCLNLSRTRIQILPESINSLYNLHTILLEDC 557 (1206)
Q Consensus 525 ~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n 557 (1206)
+|++|++++|+|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555555555555555
No 136
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.89 E-value=8e-05 Score=82.94 Aligned_cols=147 Identities=16% Similarity=0.132 Sum_probs=84.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+...+.+..++... .-..++.++|++|+|||++|+.+++.. ... ...+..+. .. .+..++.
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~~~ 87 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVRNR 87 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHHHH
Confidence 467899999999999998643 235688889999999999999998732 111 22333322 11 1111111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHH--hCCCceEEEEeCCCcc-CHhhHHhhhccCCCCCCCcEEEEEccchH-HHhhc-C
Q 045303 168 LESIANVTVDDNNLNSLQVKLKER--LSGKKFLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM-R 242 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~~-~ 242 (1206)
+..+ ... ..+.+-++|+|+++.. .......+...+.....++++|+||.... +...+ .
T Consensus 88 l~~~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 88 LTRF-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHH-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 1110 011 1234568999999765 22222233322333346778888886532 11111 2
Q ss_pred CCCceeCCCCChhhHHHHHHH
Q 045303 243 ADPVYQLKKLSDDDCLCVLTQ 263 (1206)
Q Consensus 243 ~~~~~~l~~l~~~e~~~l~~~ 263 (1206)
....+.++..+.++..+++..
T Consensus 151 R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred hceEEEeCCCCHHHHHHHHHH
Confidence 224577777788887766554
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.88 E-value=9.8e-05 Score=83.62 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=97.6
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
..++.|++++++++.+.+...-. -+...++-|.++|++|+|||++|+.+++. .... |+.+..
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 34688999999999887643111 01234567899999999999999999873 2222 222221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC-----------HhhHHhhhc---cCCC--CCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN-----------YIRWSELRC---PFVA--GAA 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~~~~~~l~~---~l~~--~~~ 224 (1206)
.++. ....+ .....+...+...-...+.+|+||+++... ......+.. .+.. ...
T Consensus 199 ~~l~----~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~ 269 (389)
T PRK03992 199 SELV----QKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG 269 (389)
T ss_pred HHHh----Hhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC
Confidence 1111 11110 111111122222223567899999996531 111111211 1111 123
Q ss_pred CcEEEEEccchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 225 GSKIVVTTRNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 225 ~~~iliTtr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
+..||.||...... ..+ .-...+.+++.+.++..++|+.+.....- ... .....+++.+.|.-
T Consensus 270 ~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~----~~~~~la~~t~g~s 337 (389)
T PRK03992 270 NVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADD----VDLEELAELTEGAS 337 (389)
T ss_pred CEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCc----CCHHHHHHHcCCCC
Confidence 56777777654322 111 12356899999999999999987643221 111 12455667776653
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.0004 Score=82.75 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=110.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|.+...+.|..++.... -.+.+.++|+.|+||||+|+.+++..-... ...... .....-...+.+
T Consensus 15 f~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~~----~~Cg~C~~C~~i 84 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPTP----EPCGKCELCRAI 84 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCCC----CCCcccHHHHHH
Confidence 3578999999999999986532 235778999999999999999987421111 000000 001111222222
Q ss_pred HHhccC-----CCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHH
Q 045303 168 LESIAN-----VTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVV 237 (1206)
Q Consensus 168 ~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~ 237 (1206)
...... ........+++.+.+... ..+++-++|+|+++......+..+...+-.....+.+|++|.+ ..+
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV 164 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence 221110 000112223332222111 1245568999999887766677776665544445555555443 333
Q ss_pred Hhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 238 AERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 238 ~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
...+ .....+++..++.++..+.+.+.+...+. ....+.+..|++.++|.+..+.
T Consensus 165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi----~is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI----EIEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2222 23356888899999888877766533221 1123567889999999775443
No 139
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.1e-05 Score=58.05 Aligned_cols=41 Identities=34% Similarity=0.469 Sum_probs=35.7
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeeccccccccccc
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPE 541 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~ 541 (1206)
++|++|++++| .+..+|..|++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 57999999999 999999889999999999999999987754
No 140
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1e-07 Score=95.45 Aligned_cols=178 Identities=16% Similarity=0.128 Sum_probs=101.3
Q ss_pred CCcceeeeccccCcC-cccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCcccc--ccccCCCCccCe
Q 045303 969 TSLEEITILNLENLK-SLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKAL--PNCMHNLTSLLD 1045 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~ 1045 (1206)
+.|+.+++++-.+.. .+...+..|.+|+.|.|.++.+...+-..+..-.+|+.|+|+.|.-.... .-.+.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 457777777755543 23334556777777777777666655555555567788888777654432 223567777788
Q ss_pred eeeecCCCCccCCCC---CCCCCcCeEEEeCcCCC--CCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeecc
Q 045303 1046 LDIRGCPSVVSFPED---GFPTNLQSLEVRGLKIS--KPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISD 1120 (1206)
Q Consensus 1046 L~L~~n~~~~~~~~~---~~~~~L~~L~Ls~n~l~--~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~ 1120 (1206)
|+|+.|......... ..-++|..|+|+++.-. ...-......+++|.+||||.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD---------------------- 322 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD---------------------- 322 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc----------------------
Confidence 888877655432211 23356677777766421 000000123455555555554
Q ss_pred CCCCcc-ccCCCCCcCcccccccccCCCCCCCC--CCCCccccceecccCC
Q 045303 1121 MPDLEC-LSSIGENLTSLKYLYLIDCPKLKYFP--EQGLPKSLLQLHIKGC 1168 (1206)
Q Consensus 1121 ~~~~~~-~~~~~~~l~~L~~L~l~~n~~l~~l~--~~~~~~~L~~L~l~~c 1168 (1206)
+-.++. ....+..|+.|++|.++.|-.+..-. +....++|.+|++.||
T Consensus 323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 332221 11122478888889998885442211 1123578899999887
No 141
>PRK06620 hypothetical protein; Validated
Probab=97.85 E-value=0.00039 Score=71.30 Aligned_cols=136 Identities=14% Similarity=0.046 Sum_probs=79.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
+.+.|+|++|+|||+|++.+++... . .++. ..... + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 6789999999999999998876321 1 1111 00000 0 001 123
Q ss_pred eEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-------HHhhcCCCCceeCCCCChhhHHHHHHHhhhCCC
Q 045303 197 FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-------VAERMRADPVYQLKKLSDDDCLCVLTQISLGAR 269 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-------~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 269 (1206)
-++++||++.........+...+. ..|..||+|++... +..++....+++++++++++-.+++.+.+...+
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 478899997432222222222222 24668999988532 223334455799999999998888877664221
Q ss_pred CCCCChhhHHHHHHHHHhcCCcchHHH
Q 045303 270 DFTRHQSLKEVGEQIVIKCGGLPLAAK 296 (1206)
Q Consensus 270 ~~~~~~~~~~~~~~i~~~~~g~Plal~ 296 (1206)
.. -.+++++-|++.+.|---.+.
T Consensus 165 -l~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 165 -VT---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred -CC---CCHHHHHHHHHHccCCHHHHH
Confidence 11 224677778888877654443
No 142
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.82 E-value=2.5e-06 Score=88.26 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHHHhccCCceeEEEecCCCCc----ccCCc-------cccCccccceeeccccccc-ccc----ccccccccccEEecC
Q 045303 492 LKMLLNHLPRLRVFSLCGYSNI----FSLPN-------EIGNLKHLRCLNLSRTRIQ-ILP----ESINSLYNLHTILLE 555 (1206)
Q Consensus 492 ~~~~~~~~~~L~~L~L~~~~~~----~~lp~-------~~~~l~~L~~L~Ls~n~i~-~lp----~~~~~L~~L~~L~L~ 555 (1206)
....+.+.+.|+.-+++.- .. ..+|+ ++...++|++||||.|.+. .-+ +-+..+..|+.|.|.
T Consensus 50 i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~ 128 (382)
T KOG1909|consen 50 IAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN 128 (382)
T ss_pred HHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhh
Confidence 4444556666666666653 22 12332 2345557777777777665 222 235567777777777
Q ss_pred CCcccccccc--------------cccCCCccceeecCCCC
Q 045303 556 DCWKLKKLCK--------------DMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 556 ~n~~~~~lp~--------------~~~~L~~L~~L~l~~n~ 582 (1206)
+| .++.... -+..-++||++..+.|+
T Consensus 129 N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 129 NC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 77 4433211 12344566666666665
No 143
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.82 E-value=0.00036 Score=70.49 Aligned_cols=127 Identities=22% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 85 LVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 85 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
+..-.+++|-|++.+.|.+-...--. .....-|.+||..|+|||++++++.......+ .--|.+..
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k-------- 88 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSK-------- 88 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECH--------
Confidence 44557899999999988876543221 22455778899999999999999886321111 11111211
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCcc-CHhhHHhhhccCCC----CCCCcEEEEEccchHHH
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNE-NYIRWSELRCPFVA----GAAGSKIVVTTRNLVVA 238 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~----~~~~~~iliTtr~~~~~ 238 (1206)
.+-.++..+.+.++. ...||+|++||+.=+ .......+...+-. ...+..|.+||-.+.+.
T Consensus 89 -----------~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 89 -----------EDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -----------HHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 122333444444442 457999999998422 22334444433322 23455566666555443
No 144
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.82 E-value=8.3e-05 Score=92.92 Aligned_cols=156 Identities=20% Similarity=0.171 Sum_probs=85.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc---ccccc-ceeEEEEEcCCCChHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHF-QIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~---~~~~f-~~~~wv~~~~~~~~~~~~ 164 (1206)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh
Confidence 568999999999999996542 23457999999999999999887321 11111 223342 1 111111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHH-hCCCceEEEEeCCCccC-------HhhHHhhhccCCCCCCCcEEEEEccchH
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKER-LSGKKFLLVLDDVWNEN-------YIRWSELRCPFVAGAAGSKIVVTTRNLV 236 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~-------~~~~~~l~~~l~~~~~~~~iliTtr~~~ 236 (1206)
.+... ..+.++....+.+. -..++.+|++|+++... ..+...+..+....+ .-++|.+|...+
T Consensus 248 -------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~e 318 (821)
T CHL00095 248 -------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDE 318 (821)
T ss_pred -------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHH
Confidence 11111 11222222222222 23568899999995211 011222332333322 345555555544
Q ss_pred HHh-------hcCCCCceeCCCCChhhHHHHHHHh
Q 045303 237 VAE-------RMRADPVYQLKKLSDDDCLCVLTQI 264 (1206)
Q Consensus 237 ~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~ 264 (1206)
... .......+.+...+.++..++++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 321 1123456888999999998888754
No 145
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00054 Score=81.13 Aligned_cols=191 Identities=14% Similarity=0.119 Sum_probs=108.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.-.+++|.+...+.+..++.... -.+...++|+.|+|||++|+.++...-....-+ ..+.+.-...+.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~ 81 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKA 81 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHH
Confidence 34679999999999999986532 346778899999999999998876311111000 000001111222
Q ss_pred HHHhccC-----CCCCCCCHHHHHHHHHHH-----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-cch
Q 045303 167 ILESIAN-----VTVDDNNLNSLQVKLKER-----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNL 235 (1206)
Q Consensus 167 i~~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r~~ 235 (1206)
+...... ........+++.+ +... ..+++-++|+|+++......+..+...+......+.+|++| ...
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~-i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRD-IRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHH-HHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 2111000 0001122222222 2221 13456688999998777666776665554444455555444 433
Q ss_pred HHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchH
Q 045303 236 VVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLA 294 (1206)
Q Consensus 236 ~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 294 (1206)
.+...+ .....+++.+++.++..+.+...+...+. ....+.+..|++.++|-+..
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 333221 23356889999999998888876643221 12246677888899887653
No 146
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.80 E-value=8.9e-05 Score=82.30 Aligned_cols=111 Identities=16% Similarity=0.137 Sum_probs=73.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
.+.++.+..++.+...|... +.+.++|++|+|||++|+.++........+..+.||.+....+..+++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788999999999998642 4678899999999999999987544445677888999988877666654321
Q ss_pred HhccCCCCCCC-CHHHHHHHHHHHh--CCCceEEEEeCCCccCHhh
Q 045303 169 ESIANVTVDDN-NLNSLQVKLKERL--SGKKFLLVLDDVWNENYIR 211 (1206)
Q Consensus 169 ~~l~~~~~~~~-~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~~ 211 (1206)
.....-. ...-..+.+.... .++++++|+|++.......
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k 288 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK 288 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH
Confidence 1110000 0011122222222 2468999999998766443
No 147
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.79 E-value=8e-07 Score=99.89 Aligned_cols=193 Identities=18% Similarity=0.135 Sum_probs=103.5
Q ss_pred CCcceeeeccccCcCcc-cccccCCCccceeeccccCCcccccCCCCCC-CCccEEEeccccC----------ccccccc
Q 045303 969 TSLEEITILNLENLKSL-PAGLHNLHHLQKIWIGYCPNLESFPEEGLPS-TKLTELTIWDCEN----------LKALPNC 1036 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~L~~L~L~~n~~----------~~~~p~~ 1036 (1206)
+++..+.+..-..-+.. |-.+.-+.+|+.|.+.+|++... .++..+ ..|+.|-=. |.. .+.+..+
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICH-NSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccccccc
Confidence 44455555443333322 55566678888888888876541 111111 122222110 100 0111111
Q ss_pred cCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCC-CCCCcc
Q 045303 1037 MHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPF-PASLTG 1115 (1206)
Q Consensus 1037 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~-~~~L~~ 1115 (1206)
+. .-.|...+.+.|.+...-.....++.|+.|||++|+++..- .+..|+.|++|||++ |.+..+|.. ....+
T Consensus 161 ~~-Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsy--N~L~~vp~l~~~gc~- 233 (1096)
T KOG1859|consen 161 PV-WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSY--NCLRHVPQLSMVGCK- 233 (1096)
T ss_pred hh-hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhccccccccccc--chhccccccchhhhh-
Confidence 11 12455666666665433222356677788888888776322 466778888888866 455666651 11111
Q ss_pred eeeccCCCCccccCCC-CCcCcccccccccCCCCCCCCCC---CCccccceecccCChhhH
Q 045303 1116 LEISDMPDLECLSSIG-ENLTSLKYLYLIDCPKLKYFPEQ---GLPKSLLQLHIKGCPLIE 1172 (1206)
Q Consensus 1116 L~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~l~~l~~~---~~~~~L~~L~l~~c~~l~ 1172 (1206)
|.++.+.+|.+..... .++.+|+.||+++| .+....+. +.+.+|..|++.|||.-.
T Consensus 234 L~~L~lrnN~l~tL~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred heeeeecccHHHhhhhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3333444443332222 57889999999998 55544432 336788999999998743
No 148
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.79 E-value=0.00059 Score=73.55 Aligned_cols=161 Identities=14% Similarity=0.073 Sum_probs=82.8
Q ss_pred ccccchhHHHHHHHHHhc---C------CCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 90 KVYGREKEKEKIIELLLN---D------NLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~---~------~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.++|-+...+++.++..- . +........-+.++|++|+|||++|+.++......+.....-|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~---- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR---- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----
Confidence 478887777666553211 0 000011223688999999999999977765211111111122444432
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCcc---------CHhhHHhhhccCCCCCCCcEEEEE
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNE---------NYIRWSELRCPFVAGAAGSKIVVT 231 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~~~~iliT 231 (1206)
.+ +...+.+. ........+.+. ..-+|+||+++.. ....+..+...+.....+.+||++
T Consensus 99 ~~----l~~~~~g~-----~~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a 166 (284)
T TIGR02880 99 DD----LVGQYIGH-----TAPKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILA 166 (284)
T ss_pred HH----HhHhhccc-----chHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 12 22222111 112222222222 3358999999632 112233344444444456677777
Q ss_pred ccchHHHhhc--------CCCCceeCCCCChhhHHHHHHHhhh
Q 045303 232 TRNLVVAERM--------RADPVYQLKKLSDDDCLCVLTQISL 266 (1206)
Q Consensus 232 tr~~~~~~~~--------~~~~~~~l~~l~~~e~~~l~~~~~~ 266 (1206)
+......... .-...+++++++.+|..+++...+.
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 6543221111 1134689999999999999888763
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.79 E-value=0.00067 Score=73.88 Aligned_cols=195 Identities=14% Similarity=0.109 Sum_probs=110.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc-------------ccccceeEEEEEc
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-------------QRHFQIKGWTCVS 155 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-------------~~~f~~~~wv~~~ 155 (1206)
.+++|.+...+.+...+.... -.+...++|+.|+||+++|..+++..-. ...++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999996542 2478999999999999999888653111 1112233444221
Q ss_pred CCCChHHHHHHHHHhcc--CCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEE
Q 045303 156 DDFDVPRVTKSILESIA--NVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKI 228 (1206)
Q Consensus 156 ~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~i 228 (1206)
...+...+-.+.++..+ .........++. +.+.+.+ .+++-++|+|+++..+......+...+-... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 10000000011111111 000111222332 2233333 2456689999998877666666665554433 4455
Q ss_pred EEEccc-hHHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 045303 229 VVTTRN-LVVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKT 297 (1206)
Q Consensus 229 liTtr~-~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 297 (1206)
|++|.+ ..+.... .....+++.++++++..+.+.+...... .......++..++|.|.....
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHH
Confidence 555544 3333222 2346789999999999999987642111 111235788999999965544
No 150
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00072 Score=80.49 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=109.7
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.-.+++|.+...+.|..++.... -.+.+.++|+.|+||||+|+.++...-....... .....-...+.
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~ 81 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVE 81 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHH
Confidence 34679999999999999886432 2456789999999999999988763211110000 00000011111
Q ss_pred HHHhcc-----CCCCCCCCHHHH---HHHHHHH-hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc-cchH
Q 045303 167 ILESIA-----NVTVDDNNLNSL---QVKLKER-LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT-RNLV 236 (1206)
Q Consensus 167 i~~~l~-----~~~~~~~~~~~~---~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt-r~~~ 236 (1206)
+...-. .........+++ .+.+... ..+++-++|+|+++..+......+...+-.....+.+|++| ....
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 110000 000001112222 2211111 12445589999998777666666665555444455655544 4444
Q ss_pred HHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHHH
Q 045303 237 VAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTLG 299 (1206)
Q Consensus 237 ~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~ 299 (1206)
+...+ .....+++++++.++..+.+...+...+. ....+.+..|++.++|.. .|+..+-
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi----~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI----SISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 43322 23457889999999988888776532221 123467788999999865 5555543
No 151
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.77 E-value=0.00027 Score=88.64 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=84.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccc----cceeEEEEEcCCCChHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~ 164 (1206)
..++||+.++.+++..|.... ..-+.++|++|+|||++|+.++........ ....+|.. +...+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh
Confidence 569999999999999996532 235568999999999999988873211100 01222221 111111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh--CCCceEEEEeCCCccC-------HhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERL--SGKKFLLVLDDVWNEN-------YIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-------~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
. +. ....+.+.....+.+.+ .+++.+|++|+++... ..+...+..+....+ .-++|.+|...
T Consensus 242 a-------~~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~ 312 (852)
T TIGR03346 242 A-------GA-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLD 312 (852)
T ss_pred h-------cc-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHH
Confidence 0 00 00111222222222222 2468999999996431 011222333333332 23455555544
Q ss_pred HHHh-------hcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 236 VVAE-------RMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 236 ~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
+... .......+.++..+.++..++++...
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 3311 11234568899999999999987654
No 152
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.75 E-value=0.00025 Score=88.45 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=84.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc---cc-cee-EEEEEcCCCChHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR---HF-QIK-GWTCVSDDFDVPR 162 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~---~f-~~~-~wv~~~~~~~~~~ 162 (1206)
-++++||+.++.++++.|.... ..-+.++|++|+|||++|+.++....... .. ... +++.++.
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------ 244 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------ 244 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------
Confidence 3569999999999999996543 23566999999999999999887321000 00 112 2222221
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHH-HHHHHh-CCCceEEEEeCCCccCH-------hhHHhhhccCCCCCCCcEEEEEcc
Q 045303 163 VTKSILESIANVTVDDNNLNSLQV-KLKERL-SGKKFLLVLDDVWNENY-------IRWSELRCPFVAGAAGSKIVVTTR 233 (1206)
Q Consensus 163 ~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l-~~~~~LlvlDdv~~~~~-------~~~~~l~~~l~~~~~~~~iliTtr 233 (1206)
+.. +. ....+.+.... .+.+.. .+++.+|++|+++.... .+...+..+....+ .-++|-+|-
T Consensus 245 l~a-------g~-~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt 315 (857)
T PRK10865 245 LVA-------GA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATT 315 (857)
T ss_pred hhh-------cc-chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCC
Confidence 100 00 00111122222 222211 35789999999964321 11223333333332 345555555
Q ss_pred chHHHh-------hcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 234 NLVVAE-------RMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 234 ~~~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
..+... ..+....+.+...+.++..++++...
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 544311 11233456777779999999887654
No 153
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.74 E-value=0.00013 Score=79.56 Aligned_cols=91 Identities=19% Similarity=0.142 Sum_probs=62.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC--CChHHHHHHHHHhccCCCCCCCCHH--HHH----H
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD--FDVPRVTKSILESIANVTVDDNNLN--SLQ----V 186 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~~~----~ 186 (1206)
....++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .++.++++.+...+.....+..... .+. +
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4468899999999999999999985433 37888889998866 7888999988655543332221111 111 1
Q ss_pred HHHHH-hCCCceEEEEeCCCc
Q 045303 187 KLKER-LSGKKFLLVLDDVWN 206 (1206)
Q Consensus 187 ~l~~~-l~~~~~LlvlDdv~~ 206 (1206)
..... -.+++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 11121 358999999999954
No 154
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.73 E-value=0.00022 Score=86.52 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=87.7
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccc---cc-cceeEEEEEcCCCChHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ---RH-FQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~---~~-f~~~~wv~~~~~~~~~~~~ 164 (1206)
+.++||++++.++++.|.... ..-+.++|++|+|||++|+.++..-... .. .+..+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l- 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL- 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH-
Confidence 469999999999999997632 2344689999999999999988631111 01 12333321 11111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHh-CCCceEEEEeCCCcc--------CHhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERL-SGKKFLLVLDDVWNE--------NYIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--------~~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
+. +. ....+.+.....+.+.+ +.++.+|++|+++.. ...+...+..++...+ .-++|-+|...
T Consensus 254 ---la---G~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~ 325 (758)
T PRK11034 254 ---LA---GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQ 325 (758)
T ss_pred ---hc---cc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChH
Confidence 10 10 00112222222232323 346789999999632 1223333344444332 34555555544
Q ss_pred HHHh-------hcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 236 VVAE-------RMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 236 ~~~~-------~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
+... ..+....+.+++.+.+++.++++...
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 3211 11234579999999999999998654
No 155
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.71 E-value=0.0012 Score=69.88 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=104.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
.+.+.+|+.++..+..++..... .-+..|.|+|.+|.|||.+++++.+... ...+|+.+-..++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 46788999999999998865431 2355679999999999999999998531 246899999999999999999
Q ss_pred HHhccCCCCCCCC-------HHHHHHHHHHH--hC--CCceEEEEeCCCccCHhhHHhh-hccC---CC-CCCCcEEEEE
Q 045303 168 LESIANVTVDDNN-------LNSLQVKLKER--LS--GKKFLLVLDDVWNENYIRWSEL-RCPF---VA-GAAGSKIVVT 231 (1206)
Q Consensus 168 ~~~l~~~~~~~~~-------~~~~~~~l~~~--l~--~~~~LlvlDdv~~~~~~~~~~l-~~~l---~~-~~~~~~iliT 231 (1206)
+...+..+.+... ..+....+.++ .. ++.++||+|+++... +.+.. ...+ .. .....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHHHHHHHHHHHhCCCceEEEE
Confidence 9998522222111 11222233331 22 458999999996543 22211 1111 00 1122334444
Q ss_pred ccch--HHH-hhcCC--CCceeCCCCChhhHHHHHHHh
Q 045303 232 TRNL--VVA-ERMRA--DPVYQLKKLSDDDCLCVLTQI 264 (1206)
Q Consensus 232 tr~~--~~~-~~~~~--~~~~~l~~l~~~e~~~l~~~~ 264 (1206)
+-.. ..- ..++. ..++.....+.+|..+++.+.
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 4432 111 11232 235667888999999988764
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.69 E-value=0.00067 Score=74.33 Aligned_cols=168 Identities=12% Similarity=0.052 Sum_probs=93.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhc-------cCCC-CCCCCHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESI-------ANVT-VDDNNLNSLQV 186 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-------~~~~-~~~~~~~~~~~ 186 (1206)
-.+.+.++|+.|+|||++|+.+++..-........ .++.. ...+.+...- .... ......+++.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~---~Cg~C----~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG---ACGSC----KGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCC----HHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 35678899999999999999887642111100000 00000 1111111000 0000 01122333333
Q ss_pred HHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-HHhh-cCCCCceeCCCCChhhHHH
Q 045303 187 KLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAER-MRADPVYQLKKLSDDDCLC 259 (1206)
Q Consensus 187 ~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ 259 (1206)
. .+.+ .+++-++|+|+++..+......+...+-....++.+|++|.+.. +... ......+.+.+++.+++.+
T Consensus 94 l-~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 94 L-VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQ 172 (328)
T ss_pred H-HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHH
Confidence 2 2222 23444667899998887777777766655556777777777643 3322 2234578999999999999
Q ss_pred HHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 260 VLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
.+...... ...+.+..++..++|.|.....+
T Consensus 173 ~L~~~~~~--------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQALPE--------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhccc--------CChHHHHHHHHHcCCCHHHHHHH
Confidence 88765311 11244567889999999754433
No 157
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.69 E-value=0.00082 Score=77.31 Aligned_cols=160 Identities=17% Similarity=0.148 Sum_probs=93.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCccccccc-c-eeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHF-Q-IKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
..-+.|+|.+|+|||+||+.+++. ..... . .+.|++. .++..++...+.. ...+. +++...
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~-----~~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKE-----GKLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhc-----ccHHH----HHHHHH
Confidence 446999999999999999999974 22222 2 3445543 4556666555532 12222 233333
Q ss_pred CCceEEEEeCCCccC-----HhhHHhhhccCCCCCCCcEEEEEccc-hH----H----HhhcCCCCceeCCCCChhhHHH
Q 045303 194 GKKFLLVLDDVWNEN-----YIRWSELRCPFVAGAAGSKIVVTTRN-LV----V----AERMRADPVYQLKKLSDDDCLC 259 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~-----~~~~~~l~~~l~~~~~~~~iliTtr~-~~----~----~~~~~~~~~~~l~~l~~~e~~~ 259 (1206)
.+.-+|++||++... +..+..+...+.. .+..||+||.. +. + ..++.....+++++.+.+.-.+
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~--~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~ 270 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHD--SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKK 270 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHH--cCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHH
Confidence 345689999996431 1122122212222 34578888853 22 1 1122334578899999999999
Q ss_pred HHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 260 VLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
++.+.+..... . -..+++.-|++.+.|.--.+..+
T Consensus 271 IL~~~~~~~~~-~---l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 271 IARKMLEIEHG-E---LPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHHHhcCC-C---CCHHHHHHHHhccccCHHHHHHH
Confidence 99888743221 1 22467888888888865554433
No 158
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.66 E-value=0.00084 Score=77.26 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=91.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCccccccc--ceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
...+.|+|.+|+|||+||+++++. ..... ..+++++ ..++...+...+... ..+. +.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~----~~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEE----FKEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHH----HHHHHH
Confidence 456899999999999999999874 22222 2334443 234444555444321 2222 223332
Q ss_pred CCceEEEEeCCCccCHhh-H-HhhhccCCC-CCCCcEEEEEccchH--H-------HhhcCCCCceeCCCCChhhHHHHH
Q 045303 194 GKKFLLVLDDVWNENYIR-W-SELRCPFVA-GAAGSKIVVTTRNLV--V-------AERMRADPVYQLKKLSDDDCLCVL 261 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~-~-~~l~~~l~~-~~~~~~iliTtr~~~--~-------~~~~~~~~~~~l~~l~~~e~~~l~ 261 (1206)
+ .-+|||||++...... + +.+...+.. ...+..+|+|+.... + ..++.....+.+++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 3489999997532111 1 112211111 113456888876421 1 122223346899999999999999
Q ss_pred HHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 262 TQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
.+.+...+. .-.++++..|++.+.|..-.+..+
T Consensus 278 ~~~~~~~~~----~l~~e~l~~ia~~~~~~~r~l~~~ 310 (405)
T TIGR00362 278 QKKAEEEGL----ELPDEVLEFIAKNIRSNVRELEGA 310 (405)
T ss_pred HHHHHHcCC----CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 988754321 223567788888888876654433
No 159
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.57 E-value=0.00023 Score=80.42 Aligned_cols=158 Identities=14% Similarity=0.121 Sum_probs=88.3
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
.++.|.+.+++++.+.+.-.-. -+-..++.+.++|++|+|||++|+.++.. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 4678999999998887742111 01124567889999999999999999983 33333 222111
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC-----------H---hhHHhhhccCCC--CCCC
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN-----------Y---IRWSELRCPFVA--GAAG 225 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~---~~~~~l~~~l~~--~~~~ 225 (1206)
++.. ...+ .....+...+.......+.+|+||+++... . .....+...+.. ...+
T Consensus 252 eL~~----k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELIQ----KYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhhh----hhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1111 1100 111112222333334678899999985321 0 001111111111 1246
Q ss_pred cEEEEEccchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhhh
Q 045303 226 SKIVVTTRNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQISL 266 (1206)
Q Consensus 226 ~~iliTtr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~ 266 (1206)
.+||+||...... ..+ .-...+.+...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 6788888764332 221 2235789999999999999987653
No 160
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.55 E-value=0.0005 Score=81.20 Aligned_cols=52 Identities=21% Similarity=0.316 Sum_probs=41.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...+++|.++.++++..++..... .....++++|+|++|+||||+++.++..
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 446799999999999999876432 1223468999999999999999999863
No 161
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.54 E-value=0.0028 Score=72.69 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=86.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
...+.|+|++|+|||+||+.+++.. ......+++++ ...+...+...+... . ...++.... .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~------~~~f~~~~~~~l~~~-----~----~~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVR------SELFTEHLVSAIRSG-----E----MQRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEee------HHHHHHHHHHHHhcc-----h----HHHHHHHcc-c
Confidence 4568899999999999999998742 22222334443 234444555544321 1 122333333 3
Q ss_pred ceEEEEeCCCccCHhhH--HhhhccCCC-CCCCcEEEEEccch-H--------HHhhcCCCCceeCCCCChhhHHHHHHH
Q 045303 196 KFLLVLDDVWNENYIRW--SELRCPFVA-GAAGSKIVVTTRNL-V--------VAERMRADPVYQLKKLSDDDCLCVLTQ 263 (1206)
Q Consensus 196 ~~LlvlDdv~~~~~~~~--~~l~~~l~~-~~~~~~iliTtr~~-~--------~~~~~~~~~~~~l~~l~~~e~~~l~~~ 263 (1206)
.-++++||+.......+ +.+...+.. ...|..||+||... . +..++.....+++.+++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 45888999865321111 122211110 01355788888542 1 122233346788999999999999988
Q ss_pred hhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 264 ISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
.+...+. .. ..+++.-|++.+.|.-
T Consensus 283 k~~~~~~-~l---~~evl~~la~~~~~di 307 (445)
T PRK12422 283 KAEALSI-RI---EETALDFLIEALSSNV 307 (445)
T ss_pred HHHHcCC-CC---CHHHHHHHHHhcCCCH
Confidence 7744321 11 2355566666666543
No 162
>PTZ00494 tuzin-like protein; Provisional
Probab=97.52 E-value=0.033 Score=60.69 Aligned_cols=171 Identities=13% Similarity=0.141 Sum_probs=107.2
Q ss_pred cccCCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 82 TTSLVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 82 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
+..+.....+|.|+++-..+.+.|.+.+ ...+++++++|.-|.||++|.+.....+.. ..++|++... +
T Consensus 364 ~~a~a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---E 432 (664)
T PTZ00494 364 MLAAAAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---E 432 (664)
T ss_pred cccccccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---c
Confidence 3445567789999999888888887654 357899999999999999999988864332 4567888766 4
Q ss_pred HHHHHHHHhccCCCCCC--CCHHHHHHHHHHH---hCCCceEEEE--eCCCccCHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 162 RVTKSILESIANVTVDD--NNLNSLQVKLKER---LSGKKFLLVL--DDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~---l~~~~~Llvl--Ddv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
+.++.+.+.++....+. +-++-+.+..+.. ..++.=+||+ -+-.+... -+.+. ..+.....-|.|++----
T Consensus 433 DtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~R-VYnE~-vaLacDrRlCHvv~EVpl 510 (664)
T PTZ00494 433 DTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGR-VYGEV-VSLVSDCQACHIVLAVPM 510 (664)
T ss_pred chHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHH-HHHHH-HHHHccchhheeeeechH
Confidence 56778888887765432 3334444444433 3345445554 33322111 11111 123333456777776554
Q ss_pred hHHHhh---cCCCCceeCCCCChhhHHHHHHHhh
Q 045303 235 LVVAER---MRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 235 ~~~~~~---~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
+.+... +..-..|.+++|+.++|.++.....
T Consensus 511 ESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 511 KALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 433211 1223468899999999999887653
No 163
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.49 E-value=0.0014 Score=75.35 Aligned_cols=167 Identities=11% Similarity=0.104 Sum_probs=88.2
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc---ccceeEEEEEcCCC
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR---HFQIKGWTCVSDDF 158 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~ 158 (1206)
.++.|.+.+++++.+.+..... -+-..++-+.++|++|+|||++|+.+++...... ......++.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 4577899999998887642110 0112356689999999999999999998422110 0112333333321
Q ss_pred ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCCceEEEEeCCCccC-------HhhH-----HhhhccCCC--CC
Q 045303 159 DVPRVTKSILESIANVTVDDNNLNSLQVKLKER-LSGKKFLLVLDDVWNEN-------YIRW-----SELRCPFVA--GA 223 (1206)
Q Consensus 159 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~-------~~~~-----~~l~~~l~~--~~ 223 (1206)
+++ ....+. .......+....+.. -.+++++|+||+++..- ..+. ..+...+.. ..
T Consensus 261 ---eLl----~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---ELL----NKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hhc----ccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 111 111000 000111122222222 23578999999996421 0011 122222221 12
Q ss_pred CCcEEEEEccchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhh
Q 045303 224 AGSKIVVTTRNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 224 ~~~~iliTtr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.+..||.||...... ..+ +-+..++++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 345566666554322 121 223468999999999999999876
No 164
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.48 E-value=0.0013 Score=76.74 Aligned_cols=160 Identities=18% Similarity=0.165 Sum_probs=93.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCccccccc--ceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERL 192 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 192 (1206)
....+.|+|++|+|||+||+.+++. ....+ ..+.++.. .++...+...+.. ...+. +.+.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~-----~~~~~----~~~~~ 209 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRN-----NTMEE----FKEKY 209 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHc-----CcHHH----HHHHH
Confidence 3456899999999999999999984 33332 22334433 2344444444421 11222 33333
Q ss_pred CCCceEEEEeCCCccCHhh-H-Hhhhc---cCCCCCCCcEEEEEccchH---------HHhhcCCCCceeCCCCChhhHH
Q 045303 193 SGKKFLLVLDDVWNENYIR-W-SELRC---PFVAGAAGSKIVVTTRNLV---------VAERMRADPVYQLKKLSDDDCL 258 (1206)
Q Consensus 193 ~~~~~LlvlDdv~~~~~~~-~-~~l~~---~l~~~~~~~~iliTtr~~~---------~~~~~~~~~~~~l~~l~~~e~~ 258 (1206)
. +.-+|||||++...... + +.+.. .+.. .+..||+|+.... +...+.....+++++.+.++-.
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 3 34489999996532111 1 12221 2222 3445788776532 1223334457899999999999
Q ss_pred HHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 259 CVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
+++.+.+...+ ..-.++++.-|++.++|..-.+..+
T Consensus 287 ~il~~~~~~~~----~~l~~e~l~~ia~~~~~~~R~l~~~ 322 (450)
T PRK00149 287 AILKKKAEEEG----IDLPDEVLEFIAKNITSNVRELEGA 322 (450)
T ss_pred HHHHHHHHHcC----CCCCHHHHHHHHcCcCCCHHHHHHH
Confidence 99998875322 1223467888999998877654433
No 165
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.0013 Score=72.50 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=83.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 194 (1206)
....+.|||..|.|||.|++++.+. ..........+.+ +.+.+..+++..+.. .-.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~----~se~f~~~~v~a~~~---------~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYL----TSEDFTNDFVKALRD---------NEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEec----cHHHHHHHHHHHHHh---------hhHHHHHHhh--
Confidence 4678999999999999999999983 3333332222222 234555555555432 1223344444
Q ss_pred CceEEEEeCCCccC-----HhhHHhhhccCCCCCCCcEEEEEccchH---------HHhhcCCCCceeCCCCChhhHHHH
Q 045303 195 KKFLLVLDDVWNEN-----YIRWSELRCPFVAGAAGSKIVVTTRNLV---------VAERMRADPVYQLKKLSDDDCLCV 260 (1206)
Q Consensus 195 ~~~LlvlDdv~~~~-----~~~~~~l~~~l~~~~~~~~iliTtr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l 260 (1206)
.--++++||++-.. +...-.+...+.. .|..||+|++... +..++...-.+++.+.+.+...++
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 33488999996422 2222222223333 3448999997632 233344556899999999999999
Q ss_pred HHHhhhCCC
Q 045303 261 LTQISLGAR 269 (1206)
Q Consensus 261 ~~~~~~~~~ 269 (1206)
+.+.+....
T Consensus 253 L~kka~~~~ 261 (408)
T COG0593 253 LRKKAEDRG 261 (408)
T ss_pred HHHHHHhcC
Confidence 988764433
No 166
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.44 E-value=4.4e-05 Score=67.81 Aligned_cols=94 Identities=20% Similarity=0.247 Sum_probs=77.5
Q ss_pred HHhccCCceeEEEecCCCCcccCCcccc-CccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCc
Q 045303 494 MLLNHLPRLRVFSLCGYSNIFSLPNEIG-NLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTK 572 (1206)
Q Consensus 494 ~~~~~~~~L~~L~L~~~~~~~~lp~~~~-~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~ 572 (1206)
..+.....|...+|++| .+..+|..|. +.+.+..|+|++|.|+.+|..+..++.|+.|+++.| .+...|..|..|.+
T Consensus 47 y~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~ 124 (177)
T KOG4579|consen 47 YMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIK 124 (177)
T ss_pred HHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHh
Confidence 34567778888999999 8888887774 445889999999999999999999999999999999 77777888888999
Q ss_pred cceeecCCCCccccCCcc
Q 045303 573 LRHLRNSNADELEEMPKG 590 (1206)
Q Consensus 573 L~~L~l~~n~~~~~~p~~ 590 (1206)
|-.|+..+|. ...+|-+
T Consensus 125 l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 125 LDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHhcCCCCc-cccCcHH
Confidence 9999888887 6666654
No 167
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0044 Score=67.18 Aligned_cols=187 Identities=11% Similarity=0.068 Sum_probs=99.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccce-----eEEEEEcCCCChHHHHHHHHHh
Q 045303 96 KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQI-----KGWTCVSDDFDVPRVTKSILES 170 (1206)
Q Consensus 96 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-----~~wv~~~~~~~~~~~~~~i~~~ 170 (1206)
...+++...+.... -...+.++|+.|+||+++|..+++..-......+ .-|+..+..+|...+... -+.
T Consensus 11 ~~~~~l~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGR-----LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNR 84 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCc
Confidence 44566666664432 3567899999999999999888763211110000 000000111110000000 000
Q ss_pred ccCCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhhc-CC
Q 045303 171 IANVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM-RA 243 (1206)
Q Consensus 171 l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~~-~~ 243 (1206)
-+.........+++.+ +.+.+ .+++-++|+|+++..+...-..+..-+-....++.+|++|... .+...+ ..
T Consensus 85 ~~~k~~~~I~idqIR~-l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR 163 (319)
T PRK08769 85 TGDKLRTEIVIEQVRE-ISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR 163 (319)
T ss_pred ccccccccccHHHHHH-HHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh
Confidence 0000000111233222 22222 2455699999998877666666666565555677777777653 333222 23
Q ss_pred CCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 045303 244 DPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLG 299 (1206)
Q Consensus 244 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 299 (1206)
...+.+.+++.+++.+.+.... .+ .+.+..++..++|.|+....+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~~-------~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQG-------VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHcC-------CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 4578899999999998887531 11 2336678999999998654443
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.43 E-value=0.00017 Score=68.53 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045303 119 ISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~ 139 (1206)
|.|+|++|+|||++|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999984
No 169
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.0055 Score=66.55 Aligned_cols=174 Identities=10% Similarity=0.051 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccccc---cee-----EEEEEcCCCChHHHHHHHH
Q 045303 97 EKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIK-----GWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 97 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~i~ 168 (1206)
..+.+...+.... -.....++|+.|+||+++|+.++...-..... .|. -++..+..+|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (325)
T PRK06871 10 TYQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL----- 79 (325)
T ss_pred HHHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE-----
Confidence 4456666664432 34678899999999999999887632111100 000 00111111111100
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhhc-
Q 045303 169 ESIANVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM- 241 (1206)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~~- 241 (1206)
..........+++.+ +.+.+ .+++-++|+|+++..+......+..-+-....++.+|++|... .+....
T Consensus 80 ---~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 80 ---EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred ---ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHH
Confidence 000001122333332 22222 2455688899999888777777777776666777777777664 333222
Q ss_pred CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch
Q 045303 242 RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL 293 (1206)
Q Consensus 242 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 293 (1206)
.....+.+.+++++++.+.+..... .. ...+...++.++|.|.
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~------~~---~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSS------AE---ISEILTALRINYGRPL 198 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhc------cC---hHHHHHHHHHcCCCHH
Confidence 2345789999999999998887531 11 1235667888999996
No 170
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.41 E-value=0.0046 Score=70.92 Aligned_cols=204 Identities=15% Similarity=0.086 Sum_probs=121.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc------cccccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDR------VQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~------~~~~f~~~~wv~~~~~~~~~ 161 (1206)
+..+-+||.+..+|...+...-.. .+....+.|.|.+|+|||+++.+|.+... --..|. .+.+....-..+.
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~ 472 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPR 472 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHH
Confidence 456779999999999988754331 24456999999999999999999987421 112333 3444555556789
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-----CCceEEEEeCCCccCHhhHHhhhccCC-CCCCCcEEEEEccch
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLS-----GKKFLLVLDDVWNENYIRWSELRCPFV-AGAAGSKIVVTTRNL 235 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~~~~~~~l~~~l~-~~~~~~~iliTtr~~ 235 (1206)
+++..|...+.+.... .....+.+..+.. .+.+++++|+++..-.-.-+.+...|- +..++++++|.+-..
T Consensus 473 ~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 9999999998765432 2233333443332 356899999985321000111222222 235677766655321
Q ss_pred --HH---------HhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 236 --VV---------AERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 236 --~~---------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
.. ...+ +...+...|.+.++-.++...+..+... -.....+=++++|+.-.|-.-.|+.+.
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHH
Confidence 11 1111 2346788899999988888887654422 223334444555655555555555444
No 171
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.40 E-value=0.0015 Score=67.84 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=56.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
...+.++|.+|+|||+||..+++.. ...-..+++++ ..++...+-.... ......+. +.+.+. +
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~---~~~~~~~~----~l~~l~-~ 162 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFS---NSETSEEQ----LLNDLS-N 162 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHh---hccccHHH----HHHHhc-c
Confidence 3578999999999999999998743 22223344443 3444444433331 01112222 233344 3
Q ss_pred ceEEEEeCCCccCHhhHHh-hhccCCCC--CCCcEEEEEccc
Q 045303 196 KFLLVLDDVWNENYIRWSE-LRCPFVAG--AAGSKIVVTTRN 234 (1206)
Q Consensus 196 ~~LlvlDdv~~~~~~~~~~-l~~~l~~~--~~~~~iliTtr~ 234 (1206)
.-+|||||+......+|.. +...+... ...-.+||||-.
T Consensus 163 ~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 163 VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 4588999997665555653 22222221 123457777764
No 172
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0032 Score=69.69 Aligned_cols=163 Identities=10% Similarity=0.040 Sum_probs=90.9
Q ss_pred cccc-chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 90 KVYG-REKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 90 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
.++| .+..++.+...+.... -.+...++|+.|+|||++|+.+++..-........ .++.. ...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 4667 6667788888775432 35677999999999999998887631111100000 00000 0111110
Q ss_pred Hhcc------CCCCCCCCHHHHHHHHHHH----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-H
Q 045303 169 ESIA------NVTVDDNNLNSLQVKLKER----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-V 237 (1206)
Q Consensus 169 ~~l~------~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~ 237 (1206)
..-. .........+++.+.+... ..+++-++|+|+++..+......+...+.....++.+|++|.... +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000 0000112233333322211 224455899999988776666667766666566777777776532 2
Q ss_pred Hhhc-CCCCceeCCCCChhhHHHHHHHh
Q 045303 238 AERM-RADPVYQLKKLSDDDCLCVLTQI 264 (1206)
Q Consensus 238 ~~~~-~~~~~~~l~~l~~~e~~~l~~~~ 264 (1206)
.... .....+++.++++++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2222 23467899999999998888653
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.40 E-value=0.00079 Score=65.07 Aligned_cols=88 Identities=18% Similarity=-0.042 Sum_probs=46.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC-
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK- 195 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 195 (1206)
..+.|+|++|+||||+|+.++.... .....++++..+........... ...................+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999987432 22223444444433222222111 111111111222222233333444333
Q ss_pred ceEEEEeCCCccC
Q 045303 196 KFLLVLDDVWNEN 208 (1206)
Q Consensus 196 ~~LlvlDdv~~~~ 208 (1206)
..++++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997654
No 174
>CHL00176 ftsH cell division protein; Validated
Probab=97.39 E-value=0.0016 Score=77.71 Aligned_cols=180 Identities=16% Similarity=0.156 Sum_probs=98.6
Q ss_pred CCCccccchhHHHHHHHHH---hcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELL---LNDNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.-.+++|.++..+++.+.+ ..... -+...++-+.++|++|+|||++|+.++... . +-|+.++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~---- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISG---- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccH----
Confidence 3456889887766665554 22110 011235578999999999999999998732 1 11222221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC----------HhhHH----hhhccCC--CCCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN----------YIRWS----ELRCPFV--AGAA 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~~~~----~l~~~l~--~~~~ 224 (1206)
.++.. ... ......+...+.......+++|++||++... ...+. .+...+. ....
T Consensus 250 s~f~~----~~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 250 SEFVE----MFV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHH----Hhh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 11111 100 0111223334445556788999999996431 11111 2222221 1234
Q ss_pred CcEEEEEccchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc
Q 045303 225 GSKIVVTTRNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL 291 (1206)
Q Consensus 225 ~~~iliTtr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 291 (1206)
+..||.||...... ..+ +-...+.++..+.++-.++++.++.... .........+++.+.|.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-----LSPDVSLELIARRTPGF 387 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCCC
Confidence 56677777664322 211 2335788899999999999988764311 11123456778888773
No 175
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.37 E-value=0.0029 Score=74.75 Aligned_cols=187 Identities=13% Similarity=0.096 Sum_probs=98.9
Q ss_pred CCCccccchhHHHHHHHHHhc---CC---CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELLLN---DN---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~---~~---~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.-.+++|-++..+++.+++.. .. ..+...++-+.++|++|+|||++|+.++... ... ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----
Confidence 345788988877766655431 10 0012234568899999999999999998732 111 222221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC----------HhhHHh----hhccCC--CCCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN----------YIRWSE----LRCPFV--AGAA 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~~~~~----l~~~l~--~~~~ 224 (1206)
.++.. ... ......+...+.......+.+|+||+++... ...+.. +...+. ....
T Consensus 122 ~~~~~----~~~-----g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVE----MFV-----GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHH----HHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 11111 110 1112233333444445678999999995421 111111 111111 1223
Q ss_pred CcEEEEEccchH-HHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHH
Q 045303 225 GSKIVVTTRNLV-VAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTL 298 (1206)
Q Consensus 225 ~~~iliTtr~~~-~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 298 (1206)
+..||.||.... +...+ +-...+.++..+.++-.++++........ . .......+++.+.|.- -.|..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~----~~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-A----PDVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-C----cchhHHHHHHhCCCCCHHHHHHH
Confidence 456666776543 21111 23457889999999999999877633211 1 1123457888887743 444433
No 176
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.35 E-value=0.0027 Score=73.92 Aligned_cols=159 Identities=16% Similarity=0.179 Sum_probs=91.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccccc--ceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHF--QIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 194 (1206)
..+.|+|..|+|||.|++.+++. ....+ ..+.++.. .++..++...+.. ...+ .+++.+..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yita------eef~~el~~al~~-----~~~~----~f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVSS------EEFTNEFINSIRD-----GKGD----SFRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHh-----ccHH----HHHHHhhc
Confidence 45899999999999999999873 22221 23344432 3455555444321 1112 23333332
Q ss_pred CceEEEEeCCCccCH-hhHHh-hhccCCC-CCCCcEEEEEccch---------HHHhhcCCCCceeCCCCChhhHHHHHH
Q 045303 195 KKFLLVLDDVWNENY-IRWSE-LRCPFVA-GAAGSKIVVTTRNL---------VVAERMRADPVYQLKKLSDDDCLCVLT 262 (1206)
Q Consensus 195 ~~~LlvlDdv~~~~~-~~~~~-l~~~l~~-~~~~~~iliTtr~~---------~~~~~~~~~~~~~l~~l~~~e~~~l~~ 262 (1206)
.-+|||||++.... ..|.. +..-+.. ...+..|||||... .+...+.....+++.+.+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 35889999965422 12222 2211111 12356688888763 122334455678999999999999999
Q ss_pred HhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 045303 263 QISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKT 297 (1206)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 297 (1206)
+.+....- . ...+++.-|++.+.+..-.|..
T Consensus 457 kka~~r~l-~---l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 457 KKAVQEQL-N---APPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHHHhcCC-C---CCHHHHHHHHHhccCCHHHHHH
Confidence 88744321 2 2246777787877766544443
No 177
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0074 Score=63.68 Aligned_cols=178 Identities=16% Similarity=0.112 Sum_probs=103.8
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
.++=|-++++++|.+...-+-. -+-..++=|.+||+||.|||-||++|+++ ....| +.+.. .
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg----S 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG----S 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc----H
Confidence 4566889999999887643221 12356788999999999999999999983 33333 22222 2
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-CCceEEEEeCCCccC--------------HhhHHhhhccCCCC--CC
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLS-GKKFLLVLDDVWNEN--------------YIRWSELRCPFVAG--AA 224 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~--------------~~~~~~l~~~l~~~--~~ 224 (1206)
++.+..+.. -..+...+.+..+ ..+..|++|.++... +-.+-++...+-.. ..
T Consensus 220 ElVqKYiGE----------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 ELVQKYIGE----------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred HHHHHHhcc----------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 333333321 1233444444443 568999999985311 11122333333332 35
Q ss_pred CcEEEEEccchHHHh-----hcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 225 GSKIVVTTRNLVVAE-----RMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 225 ~~~iliTtr~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
+.+||.+|-...+.. .-+-++.++++.-+.+.-.++|+-++..- .....-. .+.+++.|.|.-
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVD----LELLARLTEGFS 357 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcC----HHHHHHhcCCCc
Confidence 678998887654432 22345678888777777777887766321 1122222 345666777665
No 178
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=1.5e-05 Score=70.71 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=84.2
Q ss_pred CCceeEEEecCCCCcccCCcc---ccCccccceeeccccccccccccccc-cccccEEecCCCcccccccccccCCCccc
Q 045303 499 LPRLRVFSLCGYSNIFSLPNE---IGNLKHLRCLNLSRTRIQILPESINS-LYNLHTILLEDCWKLKKLCKDMGNLTKLR 574 (1206)
Q Consensus 499 ~~~L~~L~L~~~~~~~~lp~~---~~~l~~L~~L~Ls~n~i~~lp~~~~~-L~~L~~L~L~~n~~~~~lp~~~~~L~~L~ 574 (1206)
-..+..++|++| .+..+++. +.+..+|...+|++|.++.+|..|.. .+-+++|++++| .+..+|..+..++.|+
T Consensus 26 akE~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr 103 (177)
T KOG4579|consen 26 AKELHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALR 103 (177)
T ss_pred HHHhhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhh
Confidence 345677889999 77766644 56778888999999999999988754 568999999999 8999999999999999
Q ss_pred eeecCCCCccccCCcccCCcCccccCCc
Q 045303 575 HLRNSNADELEEMPKGFGKLTCLLTLGR 602 (1206)
Q Consensus 575 ~L~l~~n~~~~~~p~~~~~l~~L~~L~~ 602 (1206)
.|+++.|. +...|..|..|.+|-.|+.
T Consensus 104 ~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 104 SLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred hcccccCc-cccchHHHHHHHhHHHhcC
Confidence 99999999 7777888877877777743
No 179
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.30 E-value=2.8e-05 Score=77.32 Aligned_cols=256 Identities=19% Similarity=0.170 Sum_probs=137.8
Q ss_pred ccCCceeEEEecCCCCccc-----CCccccCccccceeecccccc---c-cccc-------cccccccccEEecCCCccc
Q 045303 497 NHLPRLRVFSLCGYSNIFS-----LPNEIGNLKHLRCLNLSRTRI---Q-ILPE-------SINSLYNLHTILLEDCWKL 560 (1206)
Q Consensus 497 ~~~~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~Ls~n~i---~-~lp~-------~~~~L~~L~~L~L~~n~~~ 560 (1206)
..+..+..++|||| .+.. +...|.+-.+|+..+++.-.. . .+|+ .+-++++|++.+||.|..-
T Consensus 27 ~~~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 34888999999999 4432 334566778899999986321 1 3443 3567899999999998655
Q ss_pred cccccc----ccCCCccceeecCCCCccccCCcc-cCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCC
Q 045303 561 KKLCKD----MGNLTKLRHLRNSNADELEEMPKG-FGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVK 635 (1206)
Q Consensus 561 ~~lp~~----~~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~ 635 (1206)
...|+. ++.-+.|.||.|++|. ++.+..+ |+ +.|++|. .
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rig--kal~~la-------------------~-------------- 149 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIG--KALFHLA-------------------Y-------------- 149 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHH--HHHHHHH-------------------H--------------
Confidence 555543 5677889999888887 3332211 11 1122220 0
Q ss_pred CcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCc------CCCCCCCccEE
Q 045303 636 DVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWL------GDSSFSKLARL 709 (1206)
Q Consensus 636 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~------~~~~~~~L~~L 709 (1206)
-....+.+.|+......|.+...+... ....+..+.+|+.+.+..|.+. |..+ +...+.+|+.|
T Consensus 150 ------nKKaa~kp~Le~vicgrNRlengs~~~--~a~~l~sh~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevL 219 (388)
T COG5238 150 ------NKKAADKPKLEVVICGRNRLENGSKEL--SAALLESHENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVL 219 (388)
T ss_pred ------HhhhccCCCceEEEeccchhccCcHHH--HHHHHHhhcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceee
Confidence 011234455666666555544332211 1122333456777777776553 2211 11245678888
Q ss_pred EEcccCCCCCC------CCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccC-CCCCccc
Q 045303 710 ELRLCMSTSLP------SVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPC-GAGQEVD 782 (1206)
Q Consensus 710 ~L~~~~~~~l~------~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~ 782 (1206)
+|..|.++..- .+...+.|+.|.+..|-....-...+........+|+|..|.+.++..-.+.+.. .......
T Consensus 220 DlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~ 299 (388)
T COG5238 220 DLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQ 299 (388)
T ss_pred eccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhh
Confidence 88887763221 3455666788888777544332222211111122677777777665433322221 1111123
Q ss_pred ccCCcccEEeeccCcccc
Q 045303 783 EVFPKLRKLSLRHCDKLQ 800 (1206)
Q Consensus 783 ~~~~~L~~L~l~~c~~l~ 800 (1206)
+.+|-|..|.+.+ |.+.
T Consensus 300 ~~~p~L~~le~ng-Nr~~ 316 (388)
T COG5238 300 DAVPLLVDLERNG-NRIK 316 (388)
T ss_pred cccHHHHHHHHcc-Ccch
Confidence 4455555555555 4443
No 180
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.002 Score=74.07 Aligned_cols=165 Identities=21% Similarity=0.231 Sum_probs=92.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
+.+-+|-++..++|++.|.-......-+.++++++|+||||||+|++.+++ .....|- -+.+++-.|..++-..
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEIRGH- 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEIRGH- 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHhccc-
Confidence 566899999999999999654332333557999999999999999999998 4444442 2334444443333100
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHh----hHHhhhccCCCC---------------CCCcEE
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYI----RWSELRCPFVAG---------------AAGSKI 228 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~----~~~~l~~~l~~~---------------~~~~~i 228 (1206)
+.... ..-+..+...+++. +.+.=+++||.++..... --.+++..+-+. -... +
T Consensus 396 ----RRTYI-GamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V-m 468 (782)
T COG0466 396 ----RRTYI-GAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV-M 468 (782)
T ss_pred ----ccccc-ccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe-E
Confidence 00000 11112233333332 344558889998643210 001111111110 1222 3
Q ss_pred EEEccc-hH-H-HhhcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 229 VVTTRN-LV-V-AERMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 229 liTtr~-~~-~-~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
-|||-+ -+ + +..+....++++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444443 22 2 2233455789999999999988887765
No 181
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.29 E-value=0.0025 Score=71.78 Aligned_cols=180 Identities=14% Similarity=0.100 Sum_probs=97.4
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
-.++.|.+...+++.+.+.-.-. .+-..++-+.++|++|+|||++|+.+++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~---- 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG---- 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----
Confidence 34688999888888876642110 01234678999999999999999999873 22222 11111
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC----------Hhh----HHhhhccCCC--CCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN----------YIR----WSELRCPFVA--GAA 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~~----~~~l~~~l~~--~~~ 224 (1206)
..+... ..+ .....+...+.......+.+|++|+++... ... +..+...+.. ...
T Consensus 213 s~l~~k----~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 213 SEFVQK----YLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred HHHHHH----hcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 111111 111 111222222333335678999999986321 001 1122222211 224
Q ss_pred CcEEEEEccchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 225 GSKIVVTTRNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 225 ~~~iliTtr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
+..||+||...... ..+ .-...+.+...+.++..++|........ .... ....++++.+.|+-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~d----vd~~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEE----VDLEDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcc----cCHHHHHHHcCCCC
Confidence 66788888764322 211 2335688999999998888886653221 1111 12445667776654
No 182
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.0088 Score=64.82 Aligned_cols=177 Identities=12% Similarity=-0.004 Sum_probs=100.4
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccccc--ce-----eEEEEEcCCCChHHHHHHHH
Q 045303 96 KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF--QI-----KGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 96 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f--~~-----~~wv~~~~~~~~~~~~~~i~ 168 (1206)
...+++...+.... -.....++|+.|+||+++|+.++...-....- .+ ..++..+..+|...
T Consensus 10 ~~~~~l~~~~~~~r-----l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~------ 78 (319)
T PRK06090 10 PVWQNWKAGLDAGR-----IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHV------ 78 (319)
T ss_pred HHHHHHHHHHHcCC-----cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEE------
Confidence 34556666664332 35688999999999999998887631111100 00 00000111111100
Q ss_pred HhccCCC-CCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhhc
Q 045303 169 ESIANVT-VDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM 241 (1206)
Q Consensus 169 ~~l~~~~-~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~~ 241 (1206)
+.... ......+++.+ +.+.+ .+++-++|+|+++.........+...+-....++.+|++|.+. .+....
T Consensus 79 --i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI 155 (319)
T PRK06090 79 --IKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTI 155 (319)
T ss_pred --EecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHH
Confidence 00000 01122333332 22222 2345589999998888777777777776656677777766654 333322
Q ss_pred -CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 242 -RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 242 -~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
.....+.+.+++++++.+.+.... . . .+..+++.++|.|+....+
T Consensus 156 ~SRCq~~~~~~~~~~~~~~~L~~~~---~----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 156 VSRCQQWVVTPPSTAQAMQWLKGQG---I----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred HhcceeEeCCCCCHHHHHHHHHHcC---C----c-----hHHHHHHHcCCCHHHHHHH
Confidence 334578999999999999887531 1 1 1346788999999866544
No 183
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.00011 Score=74.22 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=60.5
Q ss_pred CCcceeeeccccCcC--cccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCcc-ccccccCCCCccCe
Q 045303 969 TSLEEITILNLENLK--SLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLK-ALPNCMHNLTSLLD 1045 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~ 1045 (1206)
+.++++++.+|.+.. .+...+.++|.|+.|+|+.|++...+-..-.+..+|+.|.|.+..+.- .....+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 677888888887654 445556789999999999998765443222466789999997755432 23345668888899
Q ss_pred eeeecCCC
Q 045303 1046 LDIRGCPS 1053 (1206)
Q Consensus 1046 L~L~~n~~ 1053 (1206)
|++|.|++
T Consensus 151 lHmS~N~~ 158 (418)
T KOG2982|consen 151 LHMSDNSL 158 (418)
T ss_pred hhhccchh
Confidence 99998854
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.26 E-value=0.003 Score=61.66 Aligned_cols=120 Identities=16% Similarity=0.113 Sum_probs=72.2
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc------------------ccceeEEEEE
Q 045303 93 GREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR------------------HFQIKGWTCV 154 (1206)
Q Consensus 93 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~------------------~f~~~~wv~~ 154 (1206)
|.++..+.|...+.... -+..+.++|+.|+||+++|..+++..-... ......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 56777888888886532 345789999999999999988876311111 1112222211
Q ss_pred cCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEE
Q 045303 155 SDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIV 229 (1206)
Q Consensus 155 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~il 229 (1206)
.... .....+++. .+...+ .+++=++|+|+++..+...+..++..+-....++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 1110 011233333 333333 2345689999999988888888887777767889998
Q ss_pred EEccchH
Q 045303 230 VTTRNLV 236 (1206)
Q Consensus 230 iTtr~~~ 236 (1206)
++|.+..
T Consensus 137 L~t~~~~ 143 (162)
T PF13177_consen 137 LITNNPS 143 (162)
T ss_dssp EEES-GG
T ss_pred EEECChH
Confidence 8888753
No 185
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.25 E-value=0.008 Score=64.26 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-+.+.|++|+|||++|+.++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999999986
No 186
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0005 Score=69.71 Aligned_cols=83 Identities=23% Similarity=0.275 Sum_probs=60.6
Q ss_pred hccCCceeEEEecCCCCcccC---CccccCccccceeeccccccc----cccccccccccccEEecCCCccc-ccccccc
Q 045303 496 LNHLPRLRVFSLCGYSNIFSL---PNEIGNLKHLRCLNLSRTRIQ----ILPESINSLYNLHTILLEDCWKL-KKLCKDM 567 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~~~l---p~~~~~l~~L~~L~Ls~n~i~----~lp~~~~~L~~L~~L~L~~n~~~-~~lp~~~ 567 (1206)
=..++.++.|||.+| .+..- -.-+.+|++|++|+|+.|.+. .+| ..+.+|++|-|.+.+.. +.....+
T Consensus 67 ~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhh
Confidence 346788999999999 66442 223478999999999999865 344 36789999999887433 2333446
Q ss_pred cCCCccceeecCCCC
Q 045303 568 GNLTKLRHLRNSNAD 582 (1206)
Q Consensus 568 ~~L~~L~~L~l~~n~ 582 (1206)
..++.++.|.++.|+
T Consensus 143 ~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNS 157 (418)
T ss_pred hcchhhhhhhhccch
Confidence 788888888888886
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0012 Score=78.28 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=82.2
Q ss_pred CCccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
...++|.+..++.+.+.+..... .+.....+....|+.|||||-||++++.. .-+.=+..+-+++|.-..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~--Lfg~e~aliR~DMSEy~E----- 562 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA--LFGDEQALIRIDMSEYME----- 562 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH--hcCCCccceeechHHHHH-----
Confidence 35689999999999999976543 12334568888999999999999999862 211113344444443211
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCCce-EEEEeCCCccCHhhHHhhhccCCCC----C-------CCcEEEEEc
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSGKKF-LLVLDDVWNENYIRWSELRCPFVAG----A-------AGSKIVVTT 232 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~~~~~~~~l~~~l~~~----~-------~~~~iliTt 232 (1206)
+.-...+.+.++.-.--++ ...+-+..+.++| +|.||++...+..-...+.+.+-.+ + .++-||+||
T Consensus 563 kHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTS 641 (786)
T COG0542 563 KHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTS 641 (786)
T ss_pred HHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEec
Confidence 1112222222221111111 2335556667777 8889999888766666666555443 1 345566676
Q ss_pred cc
Q 045303 233 RN 234 (1206)
Q Consensus 233 r~ 234 (1206)
--
T Consensus 642 N~ 643 (786)
T COG0542 642 NA 643 (786)
T ss_pred cc
Confidence 53
No 188
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.22 E-value=0.0063 Score=66.85 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=120.9
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHH-HHHhcCcccccccceeEEEEEcCC---CChHHHHHHHHH
Q 045303 94 REKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFQIKGWTCVSDD---FDVPRVTKSILE 169 (1206)
Q Consensus 94 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa-~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~ 169 (1206)
|.+..++|..||.+.. -..|+|.||-|+||+.|+ .++..+.+. +..++|.+- .+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 6778899999997653 369999999999999999 777764322 444444322 122334444444
Q ss_pred hcc-----------------------CCC-CCCCCHHHHHH--------HHHH-------------------Hh---CCC
Q 045303 170 SIA-----------------------NVT-VDDNNLNSLQV--------KLKE-------------------RL---SGK 195 (1206)
Q Consensus 170 ~l~-----------------------~~~-~~~~~~~~~~~--------~l~~-------------------~l---~~~ 195 (1206)
++| ++. .-..+.+.... ++++ ++ ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 432 111 11122222111 1111 01 012
Q ss_pred ceEEEEeCCCccC---------HhhHHhhhccCCCCCCCcEEEEEccchHHHh----hc--CCCCceeCCCCChhhHHHH
Q 045303 196 KFLLVLDDVWNEN---------YIRWSELRCPFVAGAAGSKIVVTTRNLVVAE----RM--RADPVYQLKKLSDDDCLCV 260 (1206)
Q Consensus 196 ~~LlvlDdv~~~~---------~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~----~~--~~~~~~~l~~l~~~e~~~l 260 (1206)
+=+||+||+.... ..+|..... ...-.+||++|-+..... .+ ...+.+.|...+++.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 4589999984322 234544221 234567888888754332 33 2446788999999999999
Q ss_pred HHHhhhCCCCC------------CC----ChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCChh
Q 045303 261 LTQISLGARDF------------TR----HQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPR 309 (1206)
Q Consensus 261 ~~~~~~~~~~~------------~~----~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 309 (1206)
...+....... .. .....+.....++..||-=.-+..+++.++....+.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 99887543110 00 013455677789999999999999999998775543
No 189
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.01 Score=65.34 Aligned_cols=177 Identities=12% Similarity=0.052 Sum_probs=101.5
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccccc---cee-----EEEEEcCCCChHHHHHHH
Q 045303 96 KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIK-----GWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 96 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f---~~~-----~wv~~~~~~~~~~~~~~i 167 (1206)
...+++...+.... -.....++|+.|+||+++|..++...-....- .|. .++..+..+|+..+
T Consensus 9 ~~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i---- 79 (334)
T PRK07993 9 PDYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL---- 79 (334)
T ss_pred HHHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE----
Confidence 34566777775432 35688899999999999998887632111000 000 01111111121110
Q ss_pred HHhccCCCC-CCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhh
Q 045303 168 LESIANVTV-DDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAER 240 (1206)
Q Consensus 168 ~~~l~~~~~-~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~ 240 (1206)
..... .....+++.+ +.+.+ .+++-++|+|+++..+......+...+-....++.+|++|... .+...
T Consensus 80 ----~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 80 ----TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ----ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 00000 1123333333 22222 2456689999998887777777776666656677777777653 33332
Q ss_pred -cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 241 -MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 241 -~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
......+.+.+++++++.+.+.... + .+ .+.+..+++.++|.|...
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHH
Confidence 2234568999999999988886532 1 11 244677899999999643
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.19 E-value=0.0031 Score=64.76 Aligned_cols=136 Identities=11% Similarity=0.134 Sum_probs=74.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEE----EcCC-----CC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTC----VSDD-----FD 159 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~----~~~~-----~~ 159 (1206)
..+.+|......+..++.+ ..+|.+.|++|+|||+||.+++.+.-..+.|..++... .+.. .+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 3466788888888888853 23999999999999999988876422233454333221 1110 11
Q ss_pred hHH----HHHHHHHhccCCCCCCCCHHHHHH--------HHHHHhCCCc---eEEEEeCCCccCHhhHHhhhccCCCCCC
Q 045303 160 VPR----VTKSILESIANVTVDDNNLNSLQV--------KLKERLSGKK---FLLVLDDVWNENYIRWSELRCPFVAGAA 224 (1206)
Q Consensus 160 ~~~----~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~~~---~LlvlDdv~~~~~~~~~~l~~~l~~~~~ 224 (1206)
..+ .++.+...+...- .....+.... .-..+++++. -+||+|++.+.+..+...+.. ..+.
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~ 202 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCC
Confidence 111 1122222211100 0001111100 0013445554 499999998877655554443 3457
Q ss_pred CcEEEEEccchH
Q 045303 225 GSKIVVTTRNLV 236 (1206)
Q Consensus 225 ~~~iliTtr~~~ 236 (1206)
++++|+|.-...
T Consensus 203 ~sk~v~~GD~~Q 214 (262)
T PRK10536 203 NVTVIVNGDITQ 214 (262)
T ss_pred CCEEEEeCChhh
Confidence 999999976543
No 191
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.18 E-value=0.0031 Score=78.10 Aligned_cols=134 Identities=14% Similarity=0.151 Sum_probs=75.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLR---ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
...++|.+..++.+...+...... ......++.++|++|+|||.+|+.++.. . +...+.++++.-.+...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~--l---~~~~~~~d~se~~~~~~-- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA--L---GVHLERFDMSEYMEKHT-- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH--h---cCCeEEEeCchhhhccc--
Confidence 355889999999999888753210 1123457889999999999999999873 2 22334444443222111
Q ss_pred HHHHHhccCCCC--CCCCHHHHHHHHHHHhCC-CceEEEEeCCCccCHhhHHhhhccCCCC-----------CCCcEEEE
Q 045303 165 KSILESIANVTV--DDNNLNSLQVKLKERLSG-KKFLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVV 230 (1206)
Q Consensus 165 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~ili 230 (1206)
+.+.++.... ....... +.+.++. ..-+++||+++..+...+..+...+-.+ -.++.||+
T Consensus 526 --~~~lig~~~gyvg~~~~~~----l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 526 --VSRLIGAPPGYVGFEQGGL----LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred --HHHHhcCCCCCcccchhhH----HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 1111111111 1111112 3333333 3459999999887766666665544332 13455777
Q ss_pred Eccc
Q 045303 231 TTRN 234 (1206)
Q Consensus 231 Ttr~ 234 (1206)
||..
T Consensus 600 Tsn~ 603 (731)
T TIGR02639 600 TSNA 603 (731)
T ss_pred CCCc
Confidence 7643
No 192
>PRK08116 hypothetical protein; Validated
Probab=97.14 E-value=0.0011 Score=70.50 Aligned_cols=103 Identities=22% Similarity=0.226 Sum_probs=56.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
..+.++|.+|+|||.||..+++.. ......+++++ ..+++..+........ .....+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l--~~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL--IEKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 468999999999999999999843 22223345554 3445555554432211 112222 233344333
Q ss_pred eEEEEeCCCccCHhhHHh--hhccCCC-CCCCcEEEEEccc
Q 045303 197 FLLVLDDVWNENYIRWSE--LRCPFVA-GAAGSKIVVTTRN 234 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~--l~~~l~~-~~~~~~iliTtr~ 234 (1206)
||||||+......+|.. +..-+.. -..+..+||||..
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999995433334432 2221111 1245568999875
No 193
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.09 E-value=0.0099 Score=58.30 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=37.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.-.++||-|+.++++.-...+ +..+-+.|.||||+||||-+..+++
T Consensus 25 ~l~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHH
Confidence 346799999999998776643 3567888999999999999887776
No 194
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.09 E-value=8.2e-05 Score=84.32 Aligned_cols=87 Identities=23% Similarity=0.306 Sum_probs=50.7
Q ss_pred HHHHHhccCCceeEEEecCCCCcccCCccccCccccceeecccccccccccc-ccccccccEEecCCCcccccccccccC
Q 045303 491 VLKMLLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCWKLKKLCKDMGN 569 (1206)
Q Consensus 491 ~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-~~~L~~L~~L~L~~n~~~~~lp~~~~~ 569 (1206)
.++.+++-++.|+.|+|++| .+.... .+..|++|++|||++|.+..+|.. ...+. |+.|.+++| -+..+ .++.+
T Consensus 178 ~mD~SLqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN-~l~tL-~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN-ALTTL-RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeeccc-HHHhh-hhHHh
Confidence 34455555666666666666 444443 456666666666666666666552 22232 666666666 44444 34566
Q ss_pred CCccceeecCCCC
Q 045303 570 LTKLRHLRNSNAD 582 (1206)
Q Consensus 570 L~~L~~L~l~~n~ 582 (1206)
|++|+.||+++|-
T Consensus 253 LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNL 265 (1096)
T ss_pred hhhhhccchhHhh
Confidence 6666666666664
No 195
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0079 Score=66.31 Aligned_cols=130 Identities=16% Similarity=0.208 Sum_probs=78.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
.+...|.+.|++|+|||+||..++. ...|+.+--++........ +......+...+...-+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG~s---------------EsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIGLS---------------ESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccCcc---------------HHHHHHHHHHHHHHhhc
Confidence 3566788899999999999999986 3557654433221111100 11112223333444455
Q ss_pred CCceEEEEeCCCccCHhhHHhhh---------------ccCCCCCCCcEEEEEccchHHHhhcCC----CCceeCCCCCh
Q 045303 194 GKKFLLVLDDVWNENYIRWSELR---------------CPFVAGAAGSKIVVTTRNLVVAERMRA----DPVYQLKKLSD 254 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l~---------------~~l~~~~~~~~iliTtr~~~~~~~~~~----~~~~~l~~l~~ 254 (1206)
..--.||+||+. ...+|-.++ ...++.+..--|+-||....+...++- ...+.++.++.
T Consensus 597 S~lsiivvDdiE--rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIE--RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchh--hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 666799999994 345554332 222333344456667777888877752 24688888877
Q ss_pred -hhHHHHHHHh
Q 045303 255 -DDCLCVLTQI 264 (1206)
Q Consensus 255 -~e~~~l~~~~ 264 (1206)
++..+.+...
T Consensus 675 ~~~~~~vl~~~ 685 (744)
T KOG0741|consen 675 GEQLLEVLEEL 685 (744)
T ss_pred hHHHHHHHHHc
Confidence 6777777654
No 196
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.07 E-value=0.0021 Score=80.14 Aligned_cols=138 Identities=17% Similarity=0.108 Sum_probs=75.9
Q ss_pred CCccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
...++|.+..++.+.+.+..... .+.....++.++|++|+|||.+|+.++.. .-+.....+-++++.-.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----
Confidence 35689999999999999865321 01223457899999999999999988763 2111122222232221110
Q ss_pred HHHHHhccCCCC--CCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCC-----------CCcEEEEE
Q 045303 165 KSILESIANVTV--DDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGA-----------AGSKIVVT 231 (1206)
Q Consensus 165 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~-----------~~~~iliT 231 (1206)
..+.+-++.... .......+...+++ ...-+|+||+++..+...+..+...+-.+. .++.||+|
T Consensus 639 ~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 111111121111 01111122333332 455799999998777666666654443331 45667777
Q ss_pred ccc
Q 045303 232 TRN 234 (1206)
Q Consensus 232 tr~ 234 (1206)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 764
No 197
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.07 E-value=0.0075 Score=60.21 Aligned_cols=178 Identities=20% Similarity=0.175 Sum_probs=96.3
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEK---IIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
-++.||.++...+ |.+.|..+..=++-.++-|..+|++|.|||.+|+++++... ..| +.+.. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k--vp~-----l~vka-------t 185 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK--VPL-----LLVKA-------T 185 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC--Cce-----EEech-------H
Confidence 4678999887654 45555544322234678999999999999999999998432 222 11211 1
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHH-HHhCCCceEEEEeCCCccCHh--------hHHh----hhccCC--CCCCCcEEE
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLK-ERLSGKKFLLVLDDVWNENYI--------RWSE----LRCPFV--AGAAGSKIV 229 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~~--------~~~~----l~~~l~--~~~~~~~il 229 (1206)
.-|-+.++ +....+..+. +.-+.-++++++|.++..... +..+ +...+- ..+.|...|
T Consensus 186 ~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 11111111 1122222232 333457899999988543211 1111 111111 134566667
Q ss_pred EEccchHHHhh-cC--CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc
Q 045303 230 VTTRNLVVAER-MR--ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL 291 (1206)
Q Consensus 230 iTtr~~~~~~~-~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 291 (1206)
.+|...++... .+ -...++..--+++|-.+++...+-.- +.+ .....+.++++.+|+
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~---Plp--v~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF---PLP--VDADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC---CCc--cccCHHHHHHHhCCC
Confidence 77766554422 11 22456777778888888888776321 111 112245566666664
No 198
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0018 Score=74.01 Aligned_cols=107 Identities=24% Similarity=0.307 Sum_probs=66.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
+.+-+|.++..+++++.+.-..-++.-+.+++.++|++|||||++|+.+++ .....|. -+++++-.|..++-..=
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhhcccc
Confidence 566899999999999999765544556778999999999999999999997 3333442 23455544544431100
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCc
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWN 206 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 206 (1206)
-. --..-+..+++.++.. +-..=|+.||.|+.
T Consensus 485 RT------YVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 485 RT------YVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ee------eeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 00 0011122333334333 23344788898853
No 199
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.03 E-value=0.0048 Score=76.88 Aligned_cols=165 Identities=21% Similarity=0.235 Sum_probs=85.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
.+.+|.++..+++.+++.........+.+++.++|++|+|||++|+.++.. ....|- -+.++...+..++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~--l~~~~~---~i~~~~~~~~~~i~---- 390 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA--LNRKFV---RFSLGGVRDEAEIR---- 390 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH--hcCCeE---EEeCCCcccHHHHc----
Confidence 458899999999988765322111224458999999999999999999973 322332 12222222222221
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHh----hHHhhhcc--------CCCC-------CCCcEEE
Q 045303 169 ESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYI----RWSELRCP--------FVAG-------AAGSKIV 229 (1206)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~----~~~~l~~~--------l~~~-------~~~~~il 229 (1206)
.. ...........+...+..... ++-+++||+++..... ....+... |... ..+..+|
T Consensus 391 g~--~~~~~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 391 GH--RRTYVGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred CC--CCceeCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 10 000011112223333433323 3347899999654310 00111111 1111 1234445
Q ss_pred EEccchH-HHhh-cCCCCceeCCCCChhhHHHHHHHhh
Q 045303 230 VTTRNLV-VAER-MRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 230 iTtr~~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.||.... +... ......+++.+++.++-.+++....
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 5554421 1111 1233578999999998888887653
No 200
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.03 E-value=0.00036 Score=83.98 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=44.6
Q ss_pred CceeEEEecCCCCcccCC-ccc-cCccccceeeccccccc--cccccccccccccEEecCCCcccccccccccCCCccce
Q 045303 500 PRLRVFSLCGYSNIFSLP-NEI-GNLKHLRCLNLSRTRIQ--ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 575 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp-~~~-~~l~~L~~L~Ls~n~i~--~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 575 (1206)
.+|+.||++|...+..-+ ..+ .-|+.|+.|.+++-.+. .+-.-..+++||..||+|++ .+..+ .++++|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHH
Confidence 467777777753332221 222 34667777777665443 22333455666777777666 55555 45666666666
Q ss_pred eecCCC
Q 045303 576 LRNSNA 581 (1206)
Q Consensus 576 L~l~~n 581 (1206)
|.+.+-
T Consensus 200 L~mrnL 205 (699)
T KOG3665|consen 200 LSMRNL 205 (699)
T ss_pred HhccCC
Confidence 655443
No 201
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.03 E-value=0.0012 Score=63.42 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=40.8
Q ss_pred CccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEe
Q 045303 1018 KLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTI 1096 (1206)
Q Consensus 1018 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l 1096 (1206)
+...+||++|.+... ..|..++.|.+|.|++|.++.+-|.. ..+++|+.|.|.+|.+...-.-..+..+|.|+.|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 444555555544331 23445556666666666655554444 445556666666665553222223445555555555
Q ss_pred ec
Q 045303 1097 CG 1098 (1206)
Q Consensus 1097 s~ 1098 (1206)
-+
T Consensus 121 l~ 122 (233)
T KOG1644|consen 121 LG 122 (233)
T ss_pred cC
Confidence 44
No 202
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.02 E-value=0.0033 Score=79.10 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=77.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLR---ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
...++|.+..++.+...+...... +.....++.++|++|+|||++|+.++.. ....-...+.+.++.-.+. ...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~-~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEK-HSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhccc-chH
Confidence 346899999999999999764210 1123467889999999999999999873 2111122333444432221 111
Q ss_pred HHHHHhccCCCC--CCCCHHHHHHHHHHHhCC-CceEEEEeCCCccCHhhHHhhhccCCCC-----------CCCcEEEE
Q 045303 165 KSILESIANVTV--DDNNLNSLQVKLKERLSG-KKFLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVV 230 (1206)
Q Consensus 165 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~ili 230 (1206)
..+ ++.... ....... +...++. ...+|+||+++..+...+..+...+-.+ -.++.||+
T Consensus 641 ~~l---~g~~~g~~g~~~~g~----l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 641 ARL---IGAPPGYVGYEEGGQ----LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred HHh---cCCCCCccCcccccH----HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 111 111111 0011112 2233322 3358999999888777777666555332 13455777
Q ss_pred Eccc
Q 045303 231 TTRN 234 (1206)
Q Consensus 231 Ttr~ 234 (1206)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7764
No 203
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.01 E-value=0.0066 Score=76.02 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=74.8
Q ss_pred CCccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
...++|.+..++.+...+..... .++....++.++|++|+|||++|+.++.. ....-...+.+.++.-.. ..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~--l~~~~~~~i~id~se~~~-~~-- 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF--MFDSDDAMVRIDMSEFME-KH-- 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH--hhcCCCcEEEEEhHHhhh-hh--
Confidence 34689999999999998865321 01122357889999999999999999863 211112233444432211 11
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCC-CceEEEEeCCCccCHhhHHhhhccCCCC-----------CCCcEEEEEc
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSG-KKFLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVVTT 232 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~iliTt 232 (1206)
....+.+..+.....+. ...+.+.++. ..-+|+||+++..+...+..+...+..+ -.++.||+||
T Consensus 642 --~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 642 --SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred --hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11122111111101000 1122233322 3369999999877766666665544322 1234477787
Q ss_pred cc
Q 045303 233 RN 234 (1206)
Q Consensus 233 r~ 234 (1206)
..
T Consensus 719 N~ 720 (857)
T PRK10865 719 NL 720 (857)
T ss_pred Cc
Confidence 65
No 204
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.01 E-value=0.0031 Score=71.03 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=37.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...++||++.++.+...+... .-|.|.|++|+|||++|+.+...
T Consensus 19 ~~~i~gre~vI~lll~aalag--------~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC--------CCEEEECCCChhHHHHHHHHHHH
Confidence 346999999999999988654 36889999999999999999873
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.0095 Score=67.03 Aligned_cols=181 Identities=15% Similarity=0.133 Sum_probs=103.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.-.++=|.++.+.++.+++..... -+-..++-|.++|++|+|||.||++++.... +-++.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isAp--- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAP--- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecch---
Confidence 346788999999999888765321 1123567889999999999999999998422 222333322
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC------HhhHHh-hhccC-------CCC---C
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN------YIRWSE-LRCPF-------VAG---A 223 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------~~~~~~-l~~~l-------~~~---~ 223 (1206)
+++..+ ...+.+.+.+.+.+.-..-++++++|+++-.. +.+++. +..++ ... +
T Consensus 258 -----eivSGv-----SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 -----EIVSGV-----SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred -----hhhccc-----CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 122222 23445555555666667789999999996432 111211 22121 111 2
Q ss_pred CCcEEEEEc-cchHHHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 224 AGSKIVVTT-RNLVVAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 224 ~~~~iliTt-r~~~~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
.+..||-+| |...+...+ +-.+.|.+.--++.+-.++++..+.+-.. ...- ..++|++.+-|.-
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl-~g~~----d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRL-SGDF----DFKQLAKLTPGFV 396 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCC-CCCc----CHHHHHhcCCCcc
Confidence 334444444 433332222 23467888888888888888777644332 1111 2345666665553
No 206
>PRK09183 transposase/IS protein; Provisional
Probab=97.00 E-value=0.012 Score=62.47 Aligned_cols=23 Identities=39% Similarity=0.349 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+.|+|++|+|||+||..++.
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 34688999999999999999875
No 207
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.99 E-value=0.00074 Score=73.09 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=42.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 90 KVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+++|.++.++++++++.....+...+.+++.++|++|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 79999999999999997654322345689999999999999999999874
No 208
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.98 E-value=0.0019 Score=79.39 Aligned_cols=166 Identities=19% Similarity=0.205 Sum_probs=89.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
+.+.+|.++..++|.+++.........+..++.++|++|+||||+|+.++.. ....|- -+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch
Confidence 4568999999999998887422111224468999999999999999999862 222232 13333333332221111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhh----HHhhhccCCC---------------CCCCcEE
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIR----WSELRCPFVA---------------GAAGSKI 228 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~----~~~l~~~l~~---------------~~~~~~i 228 (1206)
+... ......+...+... ....-+++||.++...... ...+...+-+ .-.+..+
T Consensus 396 -~~~~-----g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 -RTYI-----GSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred -hccC-----CCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 1110 11112233333332 2233478899996543211 1222222211 1134445
Q ss_pred EEEccchHHHhhc-CCCCceeCCCCChhhHHHHHHHhh
Q 045303 229 VVTTRNLVVAERM-RADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 229 liTtr~~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
|.|+....+...+ .....+++.+++++|-.++.+.+.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5555443332221 233578899999999888887764
No 209
>PRK12377 putative replication protein; Provisional
Probab=96.98 E-value=0.0031 Score=65.75 Aligned_cols=102 Identities=22% Similarity=0.181 Sum_probs=54.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
...+.|+|.+|+|||+||.++++. .......++++++ .+++..+-..... ...... +.+.+ .+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~------~~l~~~l~~~~~~----~~~~~~----~l~~l-~~ 163 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV------PDVMSRLHESYDN----GQSGEK----FLQEL-CK 163 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH------HHHHHHHHHHHhc----cchHHH----HHHHh-cC
Confidence 357899999999999999999984 3233333455544 2444444433211 111112 22222 34
Q ss_pred ceEEEEeCCCccCHhhHHh-hhccCCCC--CCCcEEEEEccc
Q 045303 196 KFLLVLDDVWNENYIRWSE-LRCPFVAG--AAGSKIVVTTRN 234 (1206)
Q Consensus 196 ~~LlvlDdv~~~~~~~~~~-l~~~l~~~--~~~~~iliTtr~ 234 (1206)
.-||||||+.......|.. +...+... ...-.+||||-.
T Consensus 164 ~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 164 VDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 5599999995443334432 22222221 123347788764
No 210
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.98 E-value=0.0051 Score=71.00 Aligned_cols=181 Identities=13% Similarity=0.037 Sum_probs=91.6
Q ss_pred CccccchhHHHHHHHHHhc----CCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 89 PKVYGREKEKEKIIELLLN----DNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~----~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
.++.|.+...+.+.+.... ...-+-..++-|.++|++|+|||.+|+.++... ...| +-+..+ .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~------~-- 294 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVG------K-- 294 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhH------H--
Confidence 4677877666655543211 000012345778999999999999999998732 2111 111111 1
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH-------hhH-----HhhhccCCCCCCCcEEEEEc
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY-------IRW-----SELRCPFVAGAAGSKIVVTT 232 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------~~~-----~~l~~~l~~~~~~~~iliTt 232 (1206)
+..... ......+...+...-...+++|++|+++..-. ..+ ..+...+.....+.-||.||
T Consensus 295 --l~~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 --LFGGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred --hccccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 111110 11122222233323345789999999963210 000 11111122223445566677
Q ss_pred cchH-HHhh----cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 233 RNLV-VAER----MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 233 r~~~-~~~~----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
.... +... .+-+..+.++..+.++-.++|+.+......... .......+++.+.|+-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~---~~~dl~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW---KKYDIKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc---cccCHHHHHhhcCCCC
Confidence 6543 2211 123457888888999999999887643221000 0122456666666654
No 211
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.97 E-value=0.011 Score=67.14 Aligned_cols=146 Identities=21% Similarity=0.195 Sum_probs=85.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 118 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
++.|.|+-++||||+++.+... ..+. .+++...... +..++ .+..+ .+...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l-~d~~~-----------------~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIEL-LDLLR-----------------AYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhH-HHHHH-----------------HHHHhhccCC
Confidence 9999999999999999777663 2222 3333332221 11111 11111 1111112277
Q ss_pred eEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHH-----hhc-CCCCceeCCCCChhhHHHHHHHhhhCCCC
Q 045303 197 FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVA-----ERM-RADPVYQLKKLSDDDCLCVLTQISLGARD 270 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~-----~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~ 270 (1206)
..++||.|... .+|......+...++. +|++|+-..... ... +....+++-||+-.|-..+-...+
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----- 167 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----- 167 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc-----
Confidence 89999999665 4899888788776666 888888775432 221 234578999999998765432000
Q ss_pred CCCChhhHHHHHHHHHhcCCcchHHHH
Q 045303 271 FTRHQSLKEVGEQIVIKCGGLPLAAKT 297 (1206)
Q Consensus 271 ~~~~~~~~~~~~~i~~~~~g~Plal~~ 297 (1206)
... . ....-+=.-..||.|-++..
T Consensus 168 -~~~-~-~~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 -EPS-K-LELLFEKYLETGGFPESVKA 191 (398)
T ss_pred -chh-H-HHHHHHHHHHhCCCcHHHhC
Confidence 000 1 11123334467999988764
No 212
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.95 E-value=0.0034 Score=71.62 Aligned_cols=188 Identities=16% Similarity=0.162 Sum_probs=111.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-+++||.+.....|...+.... -...-...|+-|+||||+|+-++...-... | ....+...-...+.|
T Consensus 15 F~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEI 82 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhh
Confidence 4568999999999999997543 234567889999999999998886321111 0 001111111122222
Q ss_pred HHh--ccCC---CCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-H
Q 045303 168 LES--IANV---TVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-V 236 (1206)
Q Consensus 168 ~~~--l~~~---~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~ 236 (1206)
... +... .......++..+ +.+.. .++.=+.|+|+|+-.+...|..+..-+-........|.+|.+. .
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~-i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIRE-IIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHH-HHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 221 0000 001122222222 22222 3455589999998887788888877776666677767666653 3
Q ss_pred HHh-hcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 237 VAE-RMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 237 ~~~-~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
+.. -......+.++.++.++-...+...+..... ...++....|++..+|..
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSL 214 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCCh
Confidence 332 2234568999999999999888887643221 223456666777777744
No 213
>PRK04296 thymidine kinase; Provisional
Probab=96.93 E-value=0.002 Score=65.04 Aligned_cols=113 Identities=11% Similarity=-0.072 Sum_probs=61.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCC--CCCHHHHHHHHHHHhCC
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVD--DNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 194 (1206)
.++.|+|..|.||||+|..++.. ...+-..+..+. ..++.......++.+++..... ....++....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 47889999999999999888763 322323333331 1112222233445555422111 1233444444444 334
Q ss_pred CceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH
Q 045303 195 KKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV 236 (1206)
Q Consensus 195 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~ 236 (1206)
+.-+||+|.+.-.+..+..++...+. ..|..||+|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 55689999996543222233333322 35788999988743
No 214
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.91 E-value=0.00078 Score=81.12 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=83.4
Q ss_pred cCCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEecCCCCcccCCccccCccccceeecccccccccc--ccc
Q 045303 466 SDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILP--ESI 543 (1206)
Q Consensus 466 ~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp--~~~ 543 (1206)
..+|.||+|.+.+.. +..+.+...+.++++|+.||++++ ++..+ .++++|++|++|.+.+=.++.-+ ..+
T Consensus 145 ~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred hhCcccceEEecCce------ecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 358899999887743 223346677899999999999999 88887 77999999999999987776433 247
Q ss_pred cccccccEEecCCCcccccc--cc----cccCCCccceeecCCCCc
Q 045303 544 NSLYNLHTILLEDCWKLKKL--CK----DMGNLTKLRHLRNSNADE 583 (1206)
Q Consensus 544 ~~L~~L~~L~L~~n~~~~~l--p~----~~~~L~~L~~L~l~~n~~ 583 (1206)
.+|++|++||+|.......- .. .-..|++||.||.+++..
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 78999999999977433221 11 123589999999998763
No 215
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.91 E-value=0.0024 Score=69.19 Aligned_cols=122 Identities=16% Similarity=0.211 Sum_probs=69.3
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhcc
Q 045303 93 GREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIA 172 (1206)
Q Consensus 93 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 172 (1206)
+|....+...+++..-.. ....+-+.|+|..|+|||.||.++++... ...+ .+.++.+ .+++.++.....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEH------HHHHHHHHHHHh
Confidence 555555555666643221 12346799999999999999999988432 2222 2444443 345555554432
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHh--hhccCCC-C-CCCcEEEEEccc
Q 045303 173 NVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSE--LRCPFVA-G-AAGSKIVVTTRN 234 (1206)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~--l~~~l~~-~-~~~~~iliTtr~ 234 (1206)
. ...... + +.++ +-=||||||+..+....|.. +...+.. . ..+-.+|+||--
T Consensus 205 ~-----~~~~~~---l-~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D-----GSVKEK---I-DAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c-----CcHHHH---H-HHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 122222 2 2222 34589999997666666753 4443322 2 245568888864
No 216
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.89 E-value=0.0045 Score=77.68 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=76.6
Q ss_pred CCccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
...++|.+..++.+...+..... ..+....++.++|++|+|||++|+.+++. .-+.-...+-++++.-.+...+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccH-
Confidence 35689999999999998864321 01222356788999999999999999862 2111122333444332221111
Q ss_pred HHHHHhccCCCC--CCCCHHHHHHHHHHHhCCCc-eEEEEeCCCccCHhhHHhhhccCCCC-----------CCCcEEEE
Q 045303 165 KSILESIANVTV--DDNNLNSLQVKLKERLSGKK-FLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVV 230 (1206)
Q Consensus 165 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~ili 230 (1206)
.+.++.+.. ...... .+.+.++.++ .+++||+++..+...+..+...+-.+ -.++.+|+
T Consensus 585 ---~~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 585 ---SKLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred ---HHhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 111111110 111111 2334444444 58999999888766666666554432 14566777
Q ss_pred Eccc
Q 045303 231 TTRN 234 (1206)
Q Consensus 231 Ttr~ 234 (1206)
||..
T Consensus 658 Tsn~ 661 (821)
T CHL00095 658 TSNL 661 (821)
T ss_pred eCCc
Confidence 7764
No 217
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.87 E-value=0.0017 Score=66.51 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=27.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEE
Q 045303 118 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCV 154 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 154 (1206)
.++|.|..|+|||+++..+.. .....|..+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 577899999999999999887 35667876666544
No 218
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.86 E-value=0.027 Score=60.59 Aligned_cols=238 Identities=13% Similarity=0.082 Sum_probs=111.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
+.++=..+....+..++... +-|.|.|++|+|||++|+.++.. ....| +.+......+..++...-.
T Consensus 45 ~~y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~~---~rV~~~~~l~~~DliG~~~ 111 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWPC---VRVNLDSHVSRIDLVGKDA 111 (327)
T ss_pred CCccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCCe---EEEEecCCCChhhcCCCce
Confidence 34555555666677777432 36899999999999999999873 32222 2344444433333222110
Q ss_pred HhccCCCCCCCCHHHHHH-HHHHHhCCCceEEEEeCCCccCHhhHHh---hhc---c--CC------CCCCCcEEEEEcc
Q 045303 169 ESIANVTVDDNNLNSLQV-KLKERLSGKKFLLVLDDVWNENYIRWSE---LRC---P--FV------AGAAGSKIVVTTR 233 (1206)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlvlDdv~~~~~~~~~~---l~~---~--l~------~~~~~~~iliTtr 233 (1206)
-.+.. ........+ .+-.. ..+.+.+++|+++......... +.. . +. ..++..++|.|.-
T Consensus 112 ~~l~~----g~~~~~f~~GpL~~A-~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~N 186 (327)
T TIGR01650 112 IVLKD----GKQITEFRDGILPWA-LQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATAN 186 (327)
T ss_pred eeccC----CcceeEEecCcchhH-HhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeC
Confidence 00000 000000000 01011 1345678888886554322222 211 0 11 1234566777765
Q ss_pred chHHHh--------------hcCCC-CceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 234 NLVVAE--------------RMRAD-PVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 234 ~~~~~~--------------~~~~~-~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
...... .+... ..+.++.+++++=.+++.....+ ..........+..-+++..+... .+
T Consensus 187 p~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~-~~~~~~~~i~~~mV~la~~tR~~-----~~ 260 (327)
T TIGR01650 187 TIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKG-FDDTEGKDIINAMVRVADMTRNA-----FI 260 (327)
T ss_pred CCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccC-CCccchHHHHHHHHHHHHHHHhh-----hc
Confidence 432110 01111 13468888888888888765422 11011122222333333333210 01
Q ss_pred HhhhCCC---CChhHHHHHHhhhccccCCCCchHHHHHhh-cCCChhHHHHHhhhc--CCCCC
Q 045303 299 GGLLRGR---DDPRDWEFVLKNDIWNLRDSDILPALRVSY-HFLPPQLKQCFAYCS--LFPKD 355 (1206)
Q Consensus 299 ~~~l~~~---~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~-~~L~~~~k~~~~~l~--~fp~~ 355 (1206)
++.+... +..-.|....... ...+..+|+.++ ++.+++.|.....+. +|+.+
T Consensus 261 ~~~i~~~~SpR~li~w~~~~~~f-----~~~~~~a~~~~~~n~~~~~er~~~~e~~q~~f~~~ 318 (327)
T TIGR01650 261 NGDISTVMSPRTVITWAENAEIF-----DHDIALAFRLTFLNKCDELERPTVAEFFQRAFGED 318 (327)
T ss_pred cCCccccccHHHHHHHHHHHHhh-----CccHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence 1222211 1234554443311 236788888886 777888777765543 66554
No 219
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0068 Score=68.07 Aligned_cols=146 Identities=13% Similarity=0.063 Sum_probs=82.5
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc-------------------ccceeE
Q 045303 90 KVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFQIKG 150 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~-------------------~f~~~~ 150 (1206)
.++|-+....++..+...... ....+.++|++|+||||+|..+++..-... ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 467888888889888875431 334699999999999999998887421111 011222
Q ss_pred EEEEcCCCC---hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcE
Q 045303 151 WTCVSDDFD---VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSK 227 (1206)
Q Consensus 151 wv~~~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ 227 (1206)
.+..+.... ..+..+++.+...... ..++.-++++|+++..+...-..+...+......++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 332222222 1222222222211100 024567999999988776555556555555567788
Q ss_pred EEEEccch-HHHhhc-CCCCceeCCCCChh
Q 045303 228 IVVTTRNL-VVAERM-RADPVYQLKKLSDD 255 (1206)
Q Consensus 228 iliTtr~~-~~~~~~-~~~~~~~l~~l~~~ 255 (1206)
+|++|... .+.... .....+.+.+.+..
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchHH
Confidence 88888743 222211 12345666663333
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.83 E-value=0.007 Score=66.28 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=62.9
Q ss_pred CCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHHHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCC
Q 045303 194 GKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDF 271 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~ 271 (1206)
+++-++|+|+++..+...+..+...+-...+++.+|++|.+ ..+... ......+.+.++++++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 44558899999998888888887777666667766666655 333322 2234678999999999999887641 1
Q ss_pred CCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 272 TRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 272 ~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
.+ ...++..++|.|.....+
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999744433
No 221
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.83 E-value=0.0059 Score=60.49 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=70.2
Q ss_pred cCCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHH
Q 045303 84 SLVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRV 163 (1206)
Q Consensus 84 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 163 (1206)
.+..-..++|-|.+.+.|++-...--. +....-|.+||.-|+|||+|++++.. ......-. -|.+..
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~--e~~~~glr--LVEV~k------- 121 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLN--EYADEGLR--LVEVDK------- 121 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHH--HHHhcCCe--EEEEcH-------
Confidence 334456799999999988876543221 12345788999999999999999987 33332222 122211
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC-HhhHHhhhccCCCC---CCCcEEEEEccc
Q 045303 164 TKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN-YIRWSELRCPFVAG---AAGSKIVVTTRN 234 (1206)
Q Consensus 164 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~l~~~l~~~---~~~~~iliTtr~ 234 (1206)
.+-.++..+.+.++. ..+||+|+.||..=++ ......+...+-.+ .+...++..|.+
T Consensus 122 ------------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 ------------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ------------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 011122222222322 4679999999994332 33444555444332 244445555544
No 222
>PRK08181 transposase; Validated
Probab=96.83 E-value=0.0017 Score=68.53 Aligned_cols=101 Identities=20% Similarity=0.101 Sum_probs=53.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
.-+.++|++|+|||.||..+++. .......+.|+. ..+++..+..... ....+.... .+ .+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~----~l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIA----KL-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHH----HH-hcC
Confidence 45899999999999999998863 222222344443 2445555533211 122222222 22 234
Q ss_pred eEEEEeCCCccCHhhHH-h-hhccCCCCCCCcEEEEEccch
Q 045303 197 FLLVLDDVWNENYIRWS-E-LRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~-~-l~~~l~~~~~~~~iliTtr~~ 235 (1206)
-||||||+.......|. . +...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999644322222 1 222221111224688888763
No 223
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.82 E-value=0.012 Score=61.57 Aligned_cols=172 Identities=21% Similarity=0.235 Sum_probs=93.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC-cccccccceeEEEEEcCCCCh-HHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND-DRVQRHFQIKGWTCVSDDFDV-PRVTKS 166 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~-~~~~~~f~~~~wv~~~~~~~~-~~~~~~ 166 (1206)
..++|-.++..++-.++.+.-. -++..-|.|+|+.|.|||+|......+ .+..++| .-|...+.... .-.++.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 4589999999999888865432 234567889999999999999777664 2233333 33333333222 223444
Q ss_pred HHHhc----cCCCCCCCCHHHHHHHHHHHhC------CCceEEEEeCCCccCHhhHHhhhccC-----CCCCCCcEEEEE
Q 045303 167 ILESI----ANVTVDDNNLNSLQVKLKERLS------GKKFLLVLDDVWNENYIRWSELRCPF-----VAGAAGSKIVVT 231 (1206)
Q Consensus 167 i~~~l----~~~~~~~~~~~~~~~~l~~~l~------~~~~LlvlDdv~~~~~~~~~~l~~~l-----~~~~~~~~iliT 231 (1206)
|.+++ ........+..+....+-..|+ +-++++|+|.++--..-.-..+...+ ....+-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 44444 2222222233333333444443 23688888887542211111111111 123467788899
Q ss_pred ccchHHH---hhcC---CCC-ceeCCCCChhhHHHHHHHhh
Q 045303 232 TRNLVVA---ERMR---ADP-VYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 232 tr~~~~~---~~~~---~~~-~~~l~~l~~~e~~~l~~~~~ 265 (1206)
||-.... .++. ... ++-++.+.-++-+.+++...
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9974322 1111 222 44456677777777777764
No 224
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.015 Score=60.20 Aligned_cols=81 Identities=14% Similarity=0.236 Sum_probs=48.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCccc--ccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRV--QRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
-|++.++|+||.|||+|++++++...+ .+.|....-+.+... .++...... ...-...+.+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE------SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE------SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh------hhhHHHHHHHHHHHHHh
Confidence 378999999999999999999986533 344443333333221 222222221 12334455666777776
Q ss_pred CCce--EEEEeCCCc
Q 045303 194 GKKF--LLVLDDVWN 206 (1206)
Q Consensus 194 ~~~~--LlvlDdv~~ 206 (1206)
++.. .+.+|.|.+
T Consensus 247 d~~~lVfvLIDEVES 261 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVES 261 (423)
T ss_pred CCCcEEEEEeHHHHH
Confidence 6653 455798843
No 225
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.77 E-value=0.002 Score=61.92 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=52.3
Q ss_pred cceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCc--cCCCCCCCCCcCeEEEe
Q 045303 995 LQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVV--SFPEDGFPTNLQSLEVR 1072 (1206)
Q Consensus 995 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~L~~L~Ls 1072 (1206)
...+||++|.+... ..+..++.|..|.|.+|.++..-|.--.-+++|+.|.|.+|++.. .+-....+|.|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 44555555543221 133445566666666665555544433445556666666665532 12222455666666666
Q ss_pred CcCCCCCCC--ccCCCCCCCcceEEeec
Q 045303 1073 GLKISKPLP--EWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1073 ~n~l~~~~p--~~~~~~l~~L~~L~ls~ 1098 (1206)
+|..+..-. ...+-.+|+|++||+.+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 666552111 11344566666666643
No 226
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.75 E-value=0.0019 Score=64.09 Aligned_cols=102 Identities=23% Similarity=0.290 Sum_probs=50.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 194 (1206)
+..-+.++|.+|+|||.||..+++... ... ..+.|+.. .+++..+-.. . ........ + +.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~-~~g-~~v~f~~~------~~L~~~l~~~----~-~~~~~~~~---~-~~l~~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI-RKG-YSVLFITA------SDLLDELKQS----R-SDGSYEEL---L-KRLKR 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEEH------HHHHHHHHCC----H-CCTTHCHH---H-HHHHT
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc-cCC-cceeEeec------Cceecccccc----c-cccchhhh---c-Ccccc
Confidence 345799999999999999999887321 222 23455543 3444444321 1 11222222 2 22332
Q ss_pred CceEEEEeCCCccCHhhHHh-hhccCCC-CCCCcEEEEEccc
Q 045303 195 KKFLLVLDDVWNENYIRWSE-LRCPFVA-GAAGSKIVVTTRN 234 (1206)
Q Consensus 195 ~~~LlvlDdv~~~~~~~~~~-l~~~l~~-~~~~~~iliTtr~ 234 (1206)
-=||||||+-.....+|.. ....+.. .-.+..+||||..
T Consensus 109 -~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 109 -VDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp -SSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred -ccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 3478899996655444442 1111111 1112358888875
No 227
>PRK08118 topology modulation protein; Reviewed
Probab=96.73 E-value=0.0028 Score=62.24 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=25.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccc-cccceeEE
Q 045303 118 VISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKGW 151 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~w 151 (1206)
-|.|+|++|+||||+|+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999853332 34555555
No 228
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.69 E-value=0.0068 Score=59.35 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=65.5
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHh
Q 045303 91 VYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILES 170 (1206)
Q Consensus 91 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 170 (1206)
+||....+.++.+.+..... ...-|.|+|..|+||+.+|+.+++.-. ..-...+-+.++. .+.+.+-.++...
T Consensus 1 liG~s~~m~~~~~~~~~~a~----~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~-~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----SDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAA-LPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----STS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTT-S-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhC----CCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhh-hhcchhhhhhhcc
Confidence 47888889888888866432 224677999999999999999987321 1111222333332 2333333444433
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCC-----C-C-----CCCcEEEEEccch
Q 045303 171 IANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFV-----A-G-----AAGSKIVVTTRNL 235 (1206)
Q Consensus 171 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~-----~-~-----~~~~~iliTtr~~ 235 (1206)
-.+......... ...+.. ...=.|+||+++......-..+...+. + + ...+|||.||...
T Consensus 74 ~~~~~~~~~~~~--~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 74 EKGAFTGARSDK--KGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp CSSSSTTTSSEB--EHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccccc--CCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 211111111100 011221 223368899998765433333332221 1 1 1367899988863
No 229
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.67 E-value=0.0093 Score=74.28 Aligned_cols=181 Identities=16% Similarity=0.091 Sum_probs=93.9
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
-.++.|.++.++++.+++.-.-. -+-...+.+.++|++|+|||++|+.+++. ....| +.+...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~--- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP--- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH---
Confidence 34688999999998887642110 01123467889999999999999999873 22222 222211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH-----------hhHHhhhccCCCC-CCCcEE
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY-----------IRWSELRCPFVAG-AAGSKI 228 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~~~-~~~~~i 228 (1206)
++. ... .......+...+.......+.+|++|+++.... .....+...+... ..+..+
T Consensus 247 -~i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 -EIM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred -HHh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 111 000 011112233333344456678999999854210 0111122222111 123334
Q ss_pred EE-EccchH-HHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch
Q 045303 229 VV-TTRNLV-VAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL 293 (1206)
Q Consensus 229 li-Ttr~~~-~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 293 (1206)
+| ||.... +...+ .-...+.+...+.++-.+++........ .. .......+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~---l~--~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMP---LA--EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCC---Cc--cccCHHHHHHhCCCCCH
Confidence 44 454332 22221 1234677888888888888886542211 11 11235668888888653
No 230
>PRK06526 transposase; Provisional
Probab=96.67 E-value=0.0021 Score=67.70 Aligned_cols=24 Identities=29% Similarity=0.152 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..-+.|+|++|+|||+||..+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHH
Confidence 356899999999999999988763
No 231
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.67 E-value=0.019 Score=71.64 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=95.2
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
.++.|.+...++|.+.+.-.-. -+-..++-+.++|++|+|||++|+.++.. ....| +.+.. .
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~----~ 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRG----P 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 4577888888877776542110 01123456889999999999999999973 22222 22221 1
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC--------Hh----hHHhhhccCCC--CCCCcE
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN--------YI----RWSELRCPFVA--GAAGSK 227 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------~~----~~~~l~~~l~~--~~~~~~ 227 (1206)
+ ++.... ......+...+...-...+.+|+||+++... .. ....+...+.. ...+..
T Consensus 522 ~----l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 E----ILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred H----Hhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 111111 1122223333333335678999999985321 00 01112222221 124556
Q ss_pred EEEEccchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 228 IVVTTRNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 228 iliTtr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
||.||...... ..+ +-...+.++..+.++-.++|+....... .... .....+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~----~~l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAED----VDLEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCcc----CCHHHHHHHcCCCC
Confidence 66677554322 111 2345788899999999999976643211 1111 12455777777654
No 232
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.64 E-value=0.0019 Score=61.38 Aligned_cols=107 Identities=15% Similarity=0.099 Sum_probs=60.9
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc-ccccceeEEEEEcCCCChHHHHHHHHHh
Q 045303 92 YGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHFQIKGWTCVSDDFDVPRVTKSILES 170 (1206)
Q Consensus 92 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 170 (1206)
||+...++++.+.+..... ...-|.|+|.+|+||+++|+.++..... ...|.. +.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~~------------- 60 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCASL------------- 60 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHCT-------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhhC-------------
Confidence 5777778888777765321 3356789999999999999988764221 111211 001110
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCC-CCCCcEEEEEccc
Q 045303 171 IANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVA-GAAGSKIVVTTRN 234 (1206)
Q Consensus 171 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~-~~~~~~iliTtr~ 234 (1206)
. .+.+.. .+.-.++++|++.........+...+.. .....|+|.||+.
T Consensus 61 ---------~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 61 ---------P----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------C----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------c----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 0 111111 1444678999987765555555444432 2567899999986
No 233
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.61 E-value=0.035 Score=59.86 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++.++|||++|+|||.+|+.++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 234
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.60 E-value=0.012 Score=64.15 Aligned_cols=102 Identities=20% Similarity=0.193 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc-ccce-eEEEEEcCC-CChHHHHHHHHHhccC
Q 045303 97 EKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-HFQI-KGWTCVSDD-FDVPRVTKSILESIAN 173 (1206)
Q Consensus 97 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~-~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~ 173 (1206)
...++++.+..-. +..-+.|+|.+|+|||||++.+++. +.. +-+. ++|+.+.+. .++.++.+.+...+..
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~--i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAA--VAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 4455777775432 3346689999999999999998873 222 2233 356666554 5778888888877665
Q ss_pred CCCCCCCHHH-----HHHHHHHHh--CCCceEEEEeCCC
Q 045303 174 VTVDDNNLNS-----LQVKLKERL--SGKKFLLVLDDVW 205 (1206)
Q Consensus 174 ~~~~~~~~~~-----~~~~l~~~l--~~~~~LlvlDdv~ 205 (1206)
...+...... ....+.+++ .+++++||+|++.
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 4322221111 111122222 5889999999993
No 235
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.60 E-value=0.013 Score=58.60 Aligned_cols=127 Identities=21% Similarity=0.210 Sum_probs=62.5
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC--C-------C-----
Q 045303 94 REKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD--F-------D----- 159 (1206)
Q Consensus 94 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~-------~----- 159 (1206)
+..+-....+++.. ..++.+.|++|.|||.||.+.+.+.-..+.|+.++++.-.-. . +
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS--------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 34444555666652 248999999999999999887765444467776666532111 0 0
Q ss_pred --hHHHHHHHHHhccCCCCCCCCHHHHHHHH------HHHhCCC---ceEEEEeCCCccCHhhHHhhhccCCCCCCCcEE
Q 045303 160 --VPRVTKSILESIANVTVDDNNLNSLQVKL------KERLSGK---KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKI 228 (1206)
Q Consensus 160 --~~~~~~~i~~~l~~~~~~~~~~~~~~~~l------~~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~i 228 (1206)
...-+.+.+..+. .....+.+.+.- -..++++ ..+||+|++.+.+..++..+... .+.+|++
T Consensus 77 ~p~~~p~~d~l~~~~----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~ski 149 (205)
T PF02562_consen 77 EPYLRPIYDALEELF----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKI 149 (205)
T ss_dssp -TTTHHHHHHHTTTS-----TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EE
T ss_pred HHHHHHHHHHHHHHh----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEE
Confidence 0111222222221 122222222110 1233443 46999999988877776665443 4579999
Q ss_pred EEEccch
Q 045303 229 VVTTRNL 235 (1206)
Q Consensus 229 liTtr~~ 235 (1206)
|++--..
T Consensus 150 i~~GD~~ 156 (205)
T PF02562_consen 150 IITGDPS 156 (205)
T ss_dssp EEEE---
T ss_pred EEecCce
Confidence 9997654
No 236
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.60 E-value=0.013 Score=69.22 Aligned_cols=44 Identities=30% Similarity=0.385 Sum_probs=36.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999998876432 334678999999999999999875
No 237
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.58 E-value=0.058 Score=60.48 Aligned_cols=43 Identities=23% Similarity=0.404 Sum_probs=33.1
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 94 REKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 94 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
|+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+.+.
T Consensus 1 ~~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred ChHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445567777776543 246789999999999999999998774
No 238
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.58 E-value=0.0073 Score=62.50 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
....++.|+|++|+|||++|.+++.. ....-..++|++... ++...+.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 45689999999999999999998763 223345788888865 55554443
No 239
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0065 Score=72.36 Aligned_cols=158 Identities=18% Similarity=0.172 Sum_probs=89.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccc-ccc----ceeEEEEEcCCCChHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHF----QIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-~~f----~~~~wv~~~~~~~~~~ 162 (1206)
-++.+||++|++++++.|..... .- -.++|.+|||||++|.-++. ++. +.- ...--++.
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~K----NN--PvLiGEpGVGKTAIvEGLA~--rIv~g~VP~~L~~~~i~sL-------- 232 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTK----NN--PVLVGEPGVGKTAIVEGLAQ--RIVNGDVPESLKDKRIYSL-------- 232 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCC----CC--CeEecCCCCCHHHHHHHHHH--HHhcCCCCHHHcCCEEEEe--------
Confidence 35689999999999999976543 21 24679999999999977765 221 111 10000110
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-CCceEEEEeCCCccC--------HhhHHhhhccCCCCCCCcEEEEEcc
Q 045303 163 VTKSILESIANVTVDDNNLNSLQVKLKERLS-GKKFLLVLDDVWNEN--------YIRWSELRCPFVAGAAGSKIVVTTR 233 (1206)
Q Consensus 163 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~--------~~~~~~l~~~l~~~~~~~~iliTtr 233 (1206)
++..-..+ .....+.++....+.+.++ .++.++++|.++..- ..+...+..|....+.--.|=.||-
T Consensus 233 ---D~g~LvAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 233 ---DLGSLVAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTL 308 (786)
T ss_pred ---cHHHHhcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccH
Confidence 11111111 1223344444444444443 458999999985421 1222334444444444444555554
Q ss_pred chHH---H---hhcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 234 NLVV---A---ERMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 234 ~~~~---~---~~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
++.- . ...+.+..+.+...+.+++..+++-..
T Consensus 309 ~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 309 DEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 4211 1 111345688999999999999987654
No 240
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.57 E-value=0.0065 Score=61.23 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=51.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-CChHHHHHHHHHhccCCCC---CCCCHHHHHH-HHHH
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-FDVPRVTKSILESIANVTV---DDNNLNSLQV-KLKE 190 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~-~l~~ 190 (1206)
+++++++|+.|+||||.+.+++...+.+ -..+..++.... ....+-++..++.++.... ...+..+... .+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4799999999999999998888743333 334555555432 2345556677777765422 2223444333 3333
Q ss_pred HhCCCceEEEEeCCC
Q 045303 191 RLSGKKFLLVLDDVW 205 (1206)
Q Consensus 191 ~l~~~~~LlvlDdv~ 205 (1206)
.-.++.=+|++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 323344588888763
No 241
>PRK06921 hypothetical protein; Provisional
Probab=96.53 E-value=0.0074 Score=64.22 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=26.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccc-cceeEEEEE
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRH-FQIKGWTCV 154 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~ 154 (1206)
...+.++|.+|+|||.||.++++. .... -..++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999874 3222 234556553
No 242
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.52 E-value=0.0076 Score=69.40 Aligned_cols=84 Identities=23% Similarity=0.275 Sum_probs=56.2
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
+.-++..++|++|.||||||.-++++. -| .++-+.++...+...+-..|...+....... ..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------ad 385 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------AD 385 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------cC
Confidence 456899999999999999999988742 22 3566677777666666666655554322111 02
Q ss_pred CCceEEEEeCCCccCHhhHHhh
Q 045303 194 GKKFLLVLDDVWNENYIRWSEL 215 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l 215 (1206)
+++.-+|+|.++.......+.+
T Consensus 386 srP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred CCcceEEEecccCCcHHHHHHH
Confidence 6788899999987663333433
No 243
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.50 E-value=0.0013 Score=62.93 Aligned_cols=85 Identities=24% Similarity=0.134 Sum_probs=44.3
Q ss_pred EEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceE
Q 045303 119 ISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFL 198 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 198 (1206)
|.++|++|+|||++|+++++. .. ....-+.+....+..++....--.-+........ +...+ .++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~---~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~---l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LG---RPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGP---LVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HT---CEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-C---CCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHH--hh---cceEEEEeccccccccceeeeeeccccccccccc---ccccc-----cceeE
Confidence 679999999999999999873 21 1223355666666665543221110000000000 00001 17889
Q ss_pred EEEeCCCccCHhhHHhhh
Q 045303 199 LVLDDVWNENYIRWSELR 216 (1206)
Q Consensus 199 lvlDdv~~~~~~~~~~l~ 216 (1206)
+|||+++.....-+..+.
T Consensus 69 l~lDEin~a~~~v~~~L~ 86 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLL 86 (139)
T ss_dssp EEESSCGG--HHHHHTTH
T ss_pred EEECCcccCCHHHHHHHH
Confidence 999999866544444443
No 244
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.49 E-value=0.0086 Score=73.07 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=66.8
Q ss_pred CccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLR---ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
..++|.++.++.+...+.....+ .......+.++|++|+|||.+|+.++.. .. ...+.++++...+... ..
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~--l~---~~~i~id~se~~~~~~-~~ 531 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA--LG---IELLRFDMSEYMERHT-VS 531 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH--hC---CCcEEeechhhccccc-HH
Confidence 45799999999999988743210 1123457899999999999999999873 22 1233444443221111 11
Q ss_pred HHHHhccCCCCC-CCCHHHHHHHHHHHhC-CCceEEEEeCCCccCHhhHHhhhccC
Q 045303 166 SILESIANVTVD-DNNLNSLQVKLKERLS-GKKFLLVLDDVWNENYIRWSELRCPF 219 (1206)
Q Consensus 166 ~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~~~~~~l~~~l 219 (1206)
.+ ++.+... ..+. ...+.+.+. ....+|+||+++..+...+..+...+
T Consensus 532 ~L---iG~~~gyvg~~~---~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 532 RL---IGAPPGYVGFDQ---GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred HH---cCCCCCcccccc---cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 11 2211110 0111 112223333 33469999999887766666665444
No 245
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.0063 Score=66.69 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=43.8
Q ss_pred CCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-HHhhc-CCCCceeCCCCChhhHHHHHHHh
Q 045303 194 GKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM-RADPVYQLKKLSDDDCLCVLTQI 264 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~~-~~~~~~~l~~l~~~e~~~l~~~~ 264 (1206)
+++-++|+|+++..+......+...+.....++.+|++|.+.. +.... .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3344566788877665554555444433334566777776643 33222 23357889999999999888653
No 246
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.46 E-value=0.12 Score=58.88 Aligned_cols=88 Identities=16% Similarity=0.114 Sum_probs=46.9
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-CChHHHHHHHHHhccCCCCC---CCCHHHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-FDVPRVTKSILESIANVTVD---DNNLNSLQVKLK 189 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 189 (1206)
.++.++.++|.+|+||||+|..++...+. ..+ .+..+++... ....+.+..+.++++..... ..+.........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35789999999999999999988864321 112 3333333221 12233445555555432211 123333333333
Q ss_pred HHhCCCceEEEEeCC
Q 045303 190 ERLSGKKFLLVLDDV 204 (1206)
Q Consensus 190 ~~l~~~~~LlvlDdv 204 (1206)
+.+.+. -+||+|..
T Consensus 171 ~~~~~~-DvVIIDTA 184 (437)
T PRK00771 171 EKFKKA-DVIIVDTA 184 (437)
T ss_pred HHhhcC-CEEEEECC
Confidence 333333 56788877
No 247
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.45 E-value=0.014 Score=59.06 Aligned_cols=207 Identities=14% Similarity=0.176 Sum_probs=112.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc----cccccceeEEEEEcCC--------
Q 045303 90 KVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDR----VQRHFQIKGWTCVSDD-------- 157 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~----~~~~f~~~~wv~~~~~-------- 157 (1206)
...++++...++..... .+..+-..++|++|.||-|.+..+.+..- .+-+-+...|.+-+..
T Consensus 14 ~l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hcccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 36677777777766553 23467888999999999998866654311 1112233334433322
Q ss_pred --C-----------ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCce-EEEEeCCCccCHhhHHhhhccCCCCC
Q 045303 158 --F-----------DVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKF-LLVLDDVWNENYIRWSELRCPFVAGA 223 (1206)
Q Consensus 158 --~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~~~~~~~~l~~~l~~~~ 223 (1206)
+ .-+.+.+++++.+..... +... ..+.| ++|+-.+++.+.+.-..++.-...-.
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~q-----------ie~~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------IETQ-GQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------hhhc-cccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 0 112333444443322110 0000 12233 67777776655444444544444445
Q ss_pred CCcEEEEEccch--HHHhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc-hHHHHHHh
Q 045303 224 AGSKIVVTTRNL--VVAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP-LAAKTLGG 300 (1206)
Q Consensus 224 ~~~~iliTtr~~--~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 300 (1206)
..+|+|+..-.. -+..--...-.+++...+++|....+...+-..+- ..+ .+.+.+|+++++|.- -||-++-.
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 678887765432 12211122346789999999999999887744332 222 578999999999874 34433322
Q ss_pred h-hCCC--------CChhHHHHHHhhh
Q 045303 301 L-LRGR--------DDPRDWEFVLKND 318 (1206)
Q Consensus 301 ~-l~~~--------~~~~~w~~~~~~~ 318 (1206)
. +.+. -...+|+......
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHH
Confidence 1 1111 1245787776543
No 248
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.45 E-value=0.0049 Score=61.69 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=27.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEE
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWT 152 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 152 (1206)
+..+|.+.|++|+||||+|+.++. +....+....++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 344444444444
No 249
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.014 Score=70.71 Aligned_cols=120 Identities=14% Similarity=0.088 Sum_probs=74.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCC--CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRAD--DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
..++|.++.+..|.+++.....+.. ....++.+.|+.|+|||.||++++. -+-+..+..+-++++.- ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse~------~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSEF------QE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhhh------hh-
Confidence 3468888999999998876553212 2467888999999999999999987 34444455555555532 11
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCCce-EEEEeCCCccCHhhHHhhhccC
Q 045303 167 ILESIANVTVDDNNLNSLQVKLKERLSGKKF-LLVLDDVWNENYIRWSELRCPF 219 (1206)
Q Consensus 167 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~~~~~~~~l~~~l 219 (1206)
+.+..+... ..--.+....+.+.++.+++ +|+||||+.++......+...+
T Consensus 633 vskligsp~--gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 VSKLIGSPP--GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred hhhccCCCc--ccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 222222211 11112233456677777765 6778999887765555444443
No 250
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.43 E-value=0.0096 Score=62.42 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=34.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 162 (1206)
....++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHH
Confidence 35679999999999999999998863 22334567888776 455443
No 251
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.39 E-value=0.0058 Score=59.78 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=42.8
Q ss_pred EEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC--Cc
Q 045303 119 ISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG--KK 196 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~ 196 (1206)
+.|.|.+|+|||++|.+++.. ....++++......+. ++...+.+.-.. .+......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~-R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKR-RPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHh-CCCCceEeecHHHHHHHHHhcCCC
Confidence 678999999999999999763 1235566666666553 333333322111 12222222222223333321 33
Q ss_pred eEEEEeCC
Q 045303 197 FLLVLDDV 204 (1206)
Q Consensus 197 ~LlvlDdv 204 (1206)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999986
No 252
>PRK07261 topology modulation protein; Provisional
Probab=96.37 E-value=0.0074 Score=59.67 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=39.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccc-cccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 118 VISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
.|+|+|++|+||||||+++....... -+.+...|-.. ....+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------WQERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------cccCCHHHHHHHHHHHHhCCC
Confidence 47899999999999999987632111 12233333111 112233455555666666666
Q ss_pred eEEEEeCCCc
Q 045303 197 FLLVLDDVWN 206 (1206)
Q Consensus 197 ~LlvlDdv~~ 206 (1206)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 57788743
No 253
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.31 E-value=0.015 Score=55.66 Aligned_cols=116 Identities=21% Similarity=0.153 Sum_probs=59.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC---CChHHHHHHHHHhc-----cCCC-CCCCCHHH----
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD---FDVPRVTKSILESI-----ANVT-VDDNNLNS---- 183 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l-----~~~~-~~~~~~~~---- 183 (1206)
..|-|++..|.||||.|...+- +...+=..+.++..-.. .....++..+ ..+ +... ....+.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788888899999999976654 33333223444333222 2333333332 111 0000 00111111
Q ss_pred ---HHHHHHHHhC-CCceEEEEeCCCcc---CHhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 184 ---LQVKLKERLS-GKKFLLVLDDVWNE---NYIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 184 ---~~~~l~~~l~-~~~~LlvlDdv~~~---~~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
..+..++.+. ++--|+|||++-.. .....+.+...+.....+..||+|.|..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122333343 44569999998332 2334445555555566778999999984
No 254
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.29 E-value=0.018 Score=60.41 Aligned_cols=91 Identities=18% Similarity=0.080 Sum_probs=52.2
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCccccc----ccceeEEEEEcCCCChHHHHHHHHHhccCCC---------CCCCC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKGWTCVSDDFDVPRVTKSILESIANVT---------VDDNN 180 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~---------~~~~~ 180 (1206)
....++.|+|.+|+|||++|.+++....... .=..++|++....++...+. .+.+...... ....+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3567999999999999999998876321111 11467888877766654443 3332221110 11234
Q ss_pred HHHHHHHHHHHhC----CCceEEEEeCCC
Q 045303 181 LNSLQVKLKERLS----GKKFLLVLDDVW 205 (1206)
Q Consensus 181 ~~~~~~~l~~~l~----~~~~LlvlDdv~ 205 (1206)
.+++...+..... .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4444444444432 344578888873
No 255
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.049 Score=59.70 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=50.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
++++++|+|++|+||||++..++... ...-..+..++..... ...+-+....+.++.......+.+.+.+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 45799999999999999999998632 2221234444443221 12222333334444332223455666655544332
Q ss_pred C-CceEEEEeCCCc
Q 045303 194 G-KKFLLVLDDVWN 206 (1206)
Q Consensus 194 ~-~~~LlvlDdv~~ 206 (1206)
. +.=+|++|-.-.
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 2 345788897743
No 256
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.014 Score=64.53 Aligned_cols=52 Identities=29% Similarity=0.303 Sum_probs=37.2
Q ss_pred CCccccchh---HHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREK---EKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+.-|-|+ |++++++.|.++.. -+..=++-|.++|++|.|||-||++++-.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 345667765 56677777766432 11233678899999999999999999874
No 257
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.27 E-value=0.014 Score=62.94 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=47.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccc-cccceeEEEEEcCCC-ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKGWTCVSDDF-DVPRVTKSILESIANVTVDDNNLNSLQVKLKERL 192 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 192 (1206)
+.++++|+|+.|+||||++..++.....+ +.+ .+..++..... ...+.+....+.++.......+..++...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~- 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL- 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-
Confidence 56799999999999999998887633222 112 34455443221 122233333444433322234444554444433
Q ss_pred CCCceEEEEeCC
Q 045303 193 SGKKFLLVLDDV 204 (1206)
Q Consensus 193 ~~~~~LlvlDdv 204 (1206)
.+ .-+|++|..
T Consensus 271 ~~-~d~vliDt~ 281 (282)
T TIGR03499 271 RD-KDLILIDTA 281 (282)
T ss_pred cC-CCEEEEeCC
Confidence 33 457788864
No 258
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.015 Score=66.60 Aligned_cols=178 Identities=13% Similarity=0.112 Sum_probs=90.5
Q ss_pred ccccchhHHHHHHHHHhcCCC------C-CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHH
Q 045303 90 KVYGREKEKEKIIELLLNDNL------R-ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~------~-~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 162 (1206)
++=|-|+...+|.+...-+-. + +-..++-|.++|+||+|||++|+++++ .....| +.+..+ +
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn--e~~~nF-----lsvkgp----E 503 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN--EAGMNF-----LSVKGP----E 503 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh--hhcCCe-----eeccCH----H
Confidence 344566655555544432110 0 124678899999999999999999998 333333 333221 1
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhh-------HHhhhccCC----CC--CCCcEEE
Q 045303 163 VTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIR-------WSELRCPFV----AG--AAGSKIV 229 (1206)
Q Consensus 163 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~-------~~~l~~~l~----~~--~~~~~il 229 (1206)
++.... ..+...+.+.+++.=+-.+++++||.++...... -+.+...+. .. ..+.-||
T Consensus 504 L~sk~v---------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~Vi 574 (693)
T KOG0730|consen 504 LFSKYV---------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVI 574 (693)
T ss_pred HHHHhc---------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEE
Confidence 111111 1222333333333334456899999885432111 122222221 11 1233344
Q ss_pred EEccch-HHHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 230 VTTRNL-VVAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 230 iTtr~~-~~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
-.|-.+ .+...+ +-+..+.++.-+.+.-.++|+.++..-.- ... -...+|++++.|.-
T Consensus 575 AATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~-~~~----vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 575 AATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF-SED----VDLEELAQATEGYS 637 (693)
T ss_pred eccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC-Ccc----ccHHHHHHHhccCC
Confidence 444333 222221 24467778888888888999988743221 111 23455666666554
No 259
>PRK06696 uridine kinase; Validated
Probab=96.22 E-value=0.0061 Score=63.54 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 93 GREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 93 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.|++.+++|.+.+.... .+++.+|+|.|.+|+||||+|+.++..
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 47778888888887532 346789999999999999999999873
No 260
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.21 E-value=0.0036 Score=71.38 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=41.3
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.+++|.++.++++++.|.....+...+.+++.++|++|+|||+||+.+++.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 368999999999999994432222346689999999999999999999863
No 261
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.21 E-value=0.0034 Score=58.32 Aligned_cols=21 Identities=48% Similarity=0.605 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|+|.|++|+||||+|+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 262
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.045 Score=65.04 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=75.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
...+.+.++|++|.|||.||++++. .....|- .+... . +.... -......+...+...-+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi-----~v~~~----~----l~sk~-----vGesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFI-----SVKGS----E----LLSKW-----VGESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEE-----EeeCH----H----Hhccc-----cchHHHHHHHHHHHHHc
Confidence 3556899999999999999999998 2333332 22111 1 11111 11222333334444446
Q ss_pred CCceEEEEeCCCccC-------H----hhHHhhhccCC--CCCCCcEEEEEccchHHHh-hc----CCCCceeCCCCChh
Q 045303 194 GKKFLLVLDDVWNEN-------Y----IRWSELRCPFV--AGAAGSKIVVTTRNLVVAE-RM----RADPVYQLKKLSDD 255 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~-------~----~~~~~l~~~l~--~~~~~~~iliTtr~~~~~~-~~----~~~~~~~l~~l~~~ 255 (1206)
..+++|++|+++... . -....++..+. ....+..||-||-.+.... .+ +-...+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 789999999995321 0 01122222232 2234445555655443222 11 23457889999999
Q ss_pred hHHHHHHHhhh
Q 045303 256 DCLCVLTQISL 266 (1206)
Q Consensus 256 e~~~l~~~~~~ 266 (1206)
+..++|..+..
T Consensus 414 ~r~~i~~~~~~ 424 (494)
T COG0464 414 ERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 263
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.12 E-value=0.017 Score=60.23 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=31.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF 158 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 158 (1206)
....++.|+|.+|+|||++|.+++.. ....-..++|++....+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLS 59 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCC
Confidence 35689999999999999999998863 22223456777654443
No 264
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.12 E-value=0.015 Score=58.91 Aligned_cols=104 Identities=17% Similarity=0.119 Sum_probs=52.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh----
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERL---- 192 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 192 (1206)
+++.|.|++|+|||++++.+.......+ ..++++..+ ......+.+..+.. .... ...+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT-----~~Aa~~L~~~~~~~---a~Ti---~~~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPT-----NKAAKELREKTGIE---AQTI---HSFLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESS-----HHHHHHHHHHHTS----EEEH---HHHTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCc-----HHHHHHHHHhhCcc---hhhH---HHHHhcCCcccc
Confidence 5889999999999999998876322221 222332222 12222233332211 0110 00000000
Q ss_pred -----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 193 -----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 193 -----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
..++-++|+|++...+...+..+...... .++++|+.--..
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 13345999999987776677766655544 577888776543
No 265
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.04 E-value=0.01 Score=64.11 Aligned_cols=85 Identities=19% Similarity=0.112 Sum_probs=54.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKL 188 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 188 (1206)
+.-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++... ..+.+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 45679999999999999999988763 22333567788877666543 233333211 1233455555555
Q ss_pred HHHhC-CCceEEEEeCCC
Q 045303 189 KERLS-GKKFLLVLDDVW 205 (1206)
Q Consensus 189 ~~~l~-~~~~LlvlDdv~ 205 (1206)
...++ +..-+||+|.+.
T Consensus 126 ~~li~s~~~~lIVIDSva 143 (325)
T cd00983 126 DSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHhccCCCEEEEcchH
Confidence 55443 456789999873
No 266
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.03 E-value=0.0058 Score=66.79 Aligned_cols=102 Identities=19% Similarity=0.208 Sum_probs=52.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
..+.++|.+|+|||.||..+++.. ...-..++++++ .+++..+...-.. ...+... .+ +.+. +-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~------~~l~~~l~~~~~~---~~~~~~~---~~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTA------DELIEILREIRFN---NDKELEE---VY-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEH------HHHHHHHHHHHhc---cchhHHH---HH-HHhc-cC
Confidence 679999999999999999998742 222224555543 2333333321110 0111111 12 2222 22
Q ss_pred eEEEEeCCCccCHhhHHh-hhccCCC-C-CCCcEEEEEccc
Q 045303 197 FLLVLDDVWNENYIRWSE-LRCPFVA-G-AAGSKIVVTTRN 234 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~-l~~~l~~-~-~~~~~iliTtr~ 234 (1206)
=||||||+.......|.. ....+.. . ..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 489999996554333332 1112222 1 134568888875
No 267
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.016 Score=61.04 Aligned_cols=82 Identities=24% Similarity=0.258 Sum_probs=48.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 194 (1206)
+..-++++|.+|+|||.||.++.+. ....-..+.++++ .+++.++...... . .....+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~~------~el~~~Lk~~~~~----~----~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFITA------PDLLSKLKAAFDE----G----RLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEEH------HHHHHHHHHHHhc----C----chHHHHHHHhh-
Confidence 3457899999999999999999884 3322223445443 4566666555432 1 11122223222
Q ss_pred CceEEEEeCCCccCHhhHH
Q 045303 195 KKFLLVLDDVWNENYIRWS 213 (1206)
Q Consensus 195 ~~~LlvlDdv~~~~~~~~~ 213 (1206)
+-=||||||+-......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2238999999665544554
No 268
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.99 E-value=0.045 Score=65.64 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
....++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh
Confidence 456799999999999988865432 3346789999999999999999874
No 269
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.075 Score=60.21 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=86.8
Q ss_pred cchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 93 GREKEKEKIIELLLNDNLR-------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 93 Gr~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
|-++...+|.-++..+-.+ +-..+.-|.+||++|+|||-||++|++. ....| +.+.++ +++.
T Consensus 515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlN 583 (802)
T KOG0733|consen 515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLN 583 (802)
T ss_pred cHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHH
Confidence 4455555555554432210 1123557889999999999999999983 33333 444443 3332
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC-----HhhH------HhhhccCCC--CCCCcEEEEEc
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN-----YIRW------SELRCPFVA--GAAGSKIVVTT 232 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~~~~------~~l~~~l~~--~~~~~~iliTt 232 (1206)
.... .+...+...+++.-..-+++|+||.++... ...| ..++..+-. ...|.-||-+|
T Consensus 584 kYVG---------ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 584 KYVG---------ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred HHhh---------hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeec
Confidence 2221 222333344444446789999999995421 0111 112222221 23566677777
Q ss_pred cchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhhh
Q 045303 233 RNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQISL 266 (1206)
Q Consensus 233 r~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~ 266 (1206)
-.+.+- ..+ +-+..+-|+.-+.+|-.++++...-
T Consensus 655 NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 655 NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 655432 221 2345677888889999999998764
No 270
>PRK04132 replication factor C small subunit; Provisional
Probab=95.97 E-value=0.12 Score=63.57 Aligned_cols=157 Identities=15% Similarity=0.067 Sum_probs=94.1
Q ss_pred Ec--cCCCcHHHHHHHHhcCcccccccc-eeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceE
Q 045303 122 NG--MGGVGKTTLAQLVYNDDRVQRHFQ-IKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFL 198 (1206)
Q Consensus 122 ~G--~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~L 198 (1206)
.| |.|+||||+|..++++. ..+.++ .++-+.++...... ..+++++.+...... -..+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEE
Confidence 46 67999999999998742 111221 24445555433333 333433332111000 0124569
Q ss_pred EEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhhc-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChh
Q 045303 199 LVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQS 276 (1206)
Q Consensus 199 lvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~ 276 (1206)
+|+|+++..+......++..+-.....+++|+++.+. .+.... .....+.+.+++.++..+.+...+...+- . .
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi-~---i 709 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-E---L 709 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC-C---C
Confidence 9999999988777777776665544567777766653 332222 23467899999999998888776532211 1 1
Q ss_pred hHHHHHHHHHhcCCcch-HHHHH
Q 045303 277 LKEVGEQIVIKCGGLPL-AAKTL 298 (1206)
Q Consensus 277 ~~~~~~~i~~~~~g~Pl-al~~~ 298 (1206)
..+....|++.++|-+- |+..+
T Consensus 710 ~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 710 TEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 24678889999999874 44433
No 271
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.17 Score=50.44 Aligned_cols=154 Identities=16% Similarity=0.131 Sum_probs=85.9
Q ss_pred ccc-chhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHH
Q 045303 91 VYG-REKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 91 ~vG-r~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 162 (1206)
.|| -++++.+|.+.+.-+-. -+-.+++-|.++|++|.|||-||++|+++ ....|+.+++. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 454 46677777665532211 12356788999999999999999999974 23455666553 3
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCCceEEEEeCCCccC--------------HhhHHhhhccCCC--CCCC
Q 045303 163 VTKSILESIANVTVDDNNLNSLQVKLKER-LSGKKFLLVLDDVWNEN--------------YIRWSELRCPFVA--GAAG 225 (1206)
Q Consensus 163 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--------------~~~~~~l~~~l~~--~~~~ 225 (1206)
+.+..+..- ......+.-. -..-+-+|+.|.+++.. +-..-++..++-. ...+
T Consensus 217 lvqk~igeg----------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 LVQKYIGEG----------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHhhhh----------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 433333211 0111111111 13457788888885421 1111223333332 2356
Q ss_pred cEEEEEccchHHHh-----hcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 226 SKIVVTTRNLVVAE-----RMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 226 ~~iliTtr~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
-+||.+|..-.+.. .-+.++-++..+-+++.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 77887776543332 12234567788888887777777654
No 272
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.96 E-value=0.026 Score=59.72 Aligned_cols=50 Identities=20% Similarity=0.135 Sum_probs=36.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccc----cceeEEEEEcCCCChHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKGWTCVSDDFDVPRV 163 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~ 163 (1206)
....++.|+|.+|+|||++|.+++........ -..++|++....++...+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl 70 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL 70 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH
Confidence 35679999999999999999999753222221 257889988776665444
No 273
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.0064 Score=56.34 Aligned_cols=25 Identities=40% Similarity=0.363 Sum_probs=21.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDD 140 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~ 140 (1206)
..-++|+|++|+||||+++.+++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999998743
No 274
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.1 Score=62.11 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=103.3
Q ss_pred CCCCccccchhHHHHHH---HHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 86 VTEPKVYGREKEKEKII---ELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 86 ~~~~~~vGr~~~~~~l~---~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
..-.++.|-++..++|. +.|..+.. -+..-++=|.++|++|+|||-||++++-... +-|+.++..
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS-- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS-- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH--
Confidence 34567889887655554 44543321 1223467789999999999999999997322 334455442
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh-CCCceEEEEeCCCccCHh---------------hHHhhhccCCCC-
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERL-SGKKFLLVLDDVWNENYI---------------RWSELRCPFVAG- 222 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~~---------------~~~~l~~~l~~~- 222 (1206)
+..+.+.+.. +..+..+.... ...+++|.+|+++..... .+.++...+-..
T Consensus 379 ------EFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ------EFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ------HHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 2222222211 12222233222 356889999987532111 111222222121
Q ss_pred -CCCcEEEEEccchHHHhh-----cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 223 -AAGSKIVVTTRNLVVAER-----MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 223 -~~~~~iliTtr~~~~~~~-----~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
..+.-++-+|....+... -+-++.+.++.-+..+..++|.-++.... ...+..+..+ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---LDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---CCcchhhHHH-HHhcCCCCcHHH
Confidence 234445556665544321 12346788888889999999998874332 2233445555 889999888543
No 275
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.92 E-value=0.044 Score=63.90 Aligned_cols=60 Identities=18% Similarity=0.295 Sum_probs=43.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEE
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWT 152 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv 152 (1206)
..+++--.+-++++..||..... +....+++.++|++|+||||.++.+++.. .|+..-|.
T Consensus 18 ~~eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~ 77 (519)
T PF03215_consen 18 LDELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWI 77 (519)
T ss_pred HHHhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEec
Confidence 34566667788999999976432 22345799999999999999999998742 24444454
No 276
>PHA02244 ATPase-like protein
Probab=95.91 E-value=0.028 Score=61.12 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-|.|+|++|+|||++|+++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778999999999999999873
No 277
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.00057 Score=68.60 Aligned_cols=103 Identities=19% Similarity=0.223 Sum_probs=60.7
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccc--cccCCCccce
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCK--DMGNLTKLRH 575 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~--~~~~L~~L~~ 575 (1206)
.+.+.+.|++-|| .+..+. -..+|+.|++|.||-|.|+.|-. +..+++|+.|+|+.| .+..+.+ -+.++++|+.
T Consensus 17 dl~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 17 DLENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhh
Confidence 3555666666666 555442 23567777777777777776633 666777777777776 4444432 2467777777
Q ss_pred eecCCCCccccCCcc-----cCCcCccccCCceE
Q 045303 576 LRNSNADELEEMPKG-----FGKLTCLLTLGRFV 604 (1206)
Q Consensus 576 L~l~~n~~~~~~p~~-----~~~l~~L~~L~~~~ 604 (1206)
|.|..|.-...-+.. +.-|++|+.|+...
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 777766533332222 34455666665433
No 278
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.89 E-value=0.0035 Score=37.22 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=8.9
Q ss_pred cceeeccccccccccccc
Q 045303 526 LRCLNLSRTRIQILPESI 543 (1206)
Q Consensus 526 L~~L~Ls~n~i~~lp~~~ 543 (1206)
|++|||++|+|+.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 445555555555554443
No 279
>PRK08233 hypothetical protein; Provisional
Probab=95.87 E-value=0.023 Score=57.27 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999874
No 280
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.86 E-value=0.0029 Score=63.93 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=15.6
Q ss_pred CCccceeecccc--CCcccccCCCCCCCCccEEEeccccC
Q 045303 992 LHHLQKIWIGYC--PNLESFPEEGLPSTKLTELTIWDCEN 1029 (1206)
Q Consensus 992 l~~L~~L~L~~n--~~~~~~~~~~~~l~~L~~L~L~~n~~ 1029 (1206)
+++|++|.++.| .....++.....+++|++|++++|++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 444444444444 22333322233334444444444443
No 281
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.86 E-value=0.0034 Score=63.38 Aligned_cols=104 Identities=24% Similarity=0.289 Sum_probs=55.5
Q ss_pred CCceeEEEecCCCCcccCCccccCccccceeecccc--ccc-cccccccccccccEEecCCCccccccc--ccccCCCcc
Q 045303 499 LPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRT--RIQ-ILPESINSLYNLHTILLEDCWKLKKLC--KDMGNLTKL 573 (1206)
Q Consensus 499 ~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n--~i~-~lp~~~~~L~~L~~L~L~~n~~~~~lp--~~~~~L~~L 573 (1206)
+..|+.|++.++ .++.+ ..|..|++|++|.++.| ++. .++....++++|++|++++| .++.+. ..+..+.+|
T Consensus 42 ~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcch
Confidence 344444444444 33322 23456677777777777 444 45544555677777777777 444321 124556666
Q ss_pred ceeecCCCCccccCCc----ccCCcCccccCCceEeC
Q 045303 574 RHLRNSNADELEEMPK----GFGKLTCLLTLGRFVVG 606 (1206)
Q Consensus 574 ~~L~l~~n~~~~~~p~----~~~~l~~L~~L~~~~~~ 606 (1206)
..|++.+|. ...+-. .|.-+++|+.|+.+.+.
T Consensus 119 ~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 677777666 222211 13445666666555443
No 282
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.036 Score=61.65 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++++|++|+||||+|..++.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 283
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.85 E-value=0.021 Score=65.16 Aligned_cols=89 Identities=18% Similarity=0.083 Sum_probs=45.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
..++++|+|++|+||||++..++...........+..++..... ...+.+....+.++.......+...+...+.+ +.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~-l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER-LR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH-hc
Confidence 45799999999999999998887532111111234444432211 11222233333333222222333444444443 33
Q ss_pred CCceEEEEeCCC
Q 045303 194 GKKFLLVLDDVW 205 (1206)
Q Consensus 194 ~~~~LlvlDdv~ 205 (1206)
+.-+|++|..-
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34588889874
No 284
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.84 E-value=0.059 Score=61.54 Aligned_cols=87 Identities=14% Similarity=0.027 Sum_probs=47.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC-hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD-VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 194 (1206)
.++++++|++|+||||++..++........-..+..++...... ..+-++...+.++.......+.+++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999999988765322012223455555432211 11223333444443322233445555555442 3
Q ss_pred CceEEEEeCC
Q 045303 195 KKFLLVLDDV 204 (1206)
Q Consensus 195 ~~~LlvlDdv 204 (1206)
..-+|++|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3568899976
No 285
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.84 E-value=0.027 Score=62.32 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=37.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|+...+.++.+.+..... ...-|.|+|.+|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 4589999999999888876432 334688999999999999999875
No 286
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.82 E-value=0.015 Score=62.87 Aligned_cols=85 Identities=18% Similarity=0.118 Sum_probs=53.6
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKL 188 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 188 (1206)
++-+++-|+|++|+||||||.+++.. ....-..++|++..+.++.. .++.++... .++...++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999888763 22233456788776655542 233333211 1234455555555
Q ss_pred HHHhC-CCceEEEEeCCC
Q 045303 189 KERLS-GKKFLLVLDDVW 205 (1206)
Q Consensus 189 ~~~l~-~~~~LlvlDdv~ 205 (1206)
....+ +..-+||+|.+.
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 456799999984
No 287
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.81 E-value=0.084 Score=50.74 Aligned_cols=59 Identities=19% Similarity=0.379 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCceEEEEeC----CCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHhhcC
Q 045303 182 NSLQVKLKERLSGKKFLLVLDD----VWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMR 242 (1206)
Q Consensus 182 ~~~~~~l~~~l~~~~~LlvlDd----v~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~~~ 242 (1206)
++..-.+.+.+-+++-+++-|. ++.+ ..|+-+.-.-.-...|..||++|.+..+...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~--~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPD--LSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChH--HHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3444456777778888999995 3322 345443211111346899999999988776653
No 288
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.81 E-value=0.0023 Score=64.21 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=115.5
Q ss_pred CCCcceeeeccccCcCccc----ccccCCCccceeeccccCCcc-----------cccCCCCCCCCccEEEeccccCccc
Q 045303 968 NTSLEEITILNLENLKSLP----AGLHNLHHLQKIWIGYCPNLE-----------SFPEEGLPSTKLTELTIWDCENLKA 1032 (1206)
Q Consensus 968 ~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~n~~~~-----------~~~~~~~~l~~L~~L~L~~n~~~~~ 1032 (1206)
...+.++++++|.+.+.-. ..+.+-.+|+..+++.- +++ .+...+..||.|+..+||.|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4678899999998766433 33455677777777763 332 1223456788999999999887665
Q ss_pred ccc----ccCCCCccCeeeeecCCCCccCCC---------------CCCCCCcCeEEEeCcCCCCCCCc----cCCCCCC
Q 045303 1033 LPN----CMHNLTSLLDLDIRGCPSVVSFPE---------------DGFPTNLQSLEVRGLKISKPLPE----WGFNRFT 1089 (1206)
Q Consensus 1033 ~p~----~~~~l~~L~~L~L~~n~~~~~~~~---------------~~~~~~L~~L~Ls~n~l~~~~p~----~~~~~l~ 1089 (1206)
.|. .+++-+.|+.|.+++|.+-- +.. ...-|.|++.....|++.. .|. ..++.-.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp-~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~ 185 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGP-IAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHE 185 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCc-cchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhc
Confidence 554 34577889999999886532 211 1234788888888888752 121 1233335
Q ss_pred CcceEEeecCCCCceecCC----CCCCCcceeeccCCCCccccCCC-------CCcCcccccccccCCCCCCCCC-----
Q 045303 1090 SLRRFTICGGCPDLVSLPP----FPASLTGLEISDMPDLECLSSIG-------ENLTSLKYLYLIDCPKLKYFPE----- 1153 (1206)
Q Consensus 1090 ~L~~L~ls~~~~~l~~lp~----~~~~L~~L~~~~~~~~~~~~~~~-------~~l~~L~~L~l~~n~~l~~l~~----- 1153 (1206)
+|+++.+..|...-.-+.. .+..++.|.++|+..|.++-... ...+.|++|.+.+| .+..--.
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC-lls~~G~~~v~~ 264 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC-LLSNEGVKSVLR 264 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch-hhccccHHHHHH
Confidence 7777777653221111110 23344455555555555443221 44566777777777 3332111
Q ss_pred ---CCCccccceecccCChh
Q 045303 1154 ---QGLPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1154 ---~~~~~~L~~L~l~~c~~ 1170 (1206)
..+.++|+.|...+|..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HhhhhcCCCccccccchhhh
Confidence 12346677777666654
No 289
>PHA00729 NTP-binding motif containing protein
Probab=95.80 E-value=0.015 Score=58.97 Aligned_cols=24 Identities=46% Similarity=0.494 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+...++|+|.+|+|||+||..+++
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999987
No 290
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.068 Score=61.62 Aligned_cols=165 Identities=16% Similarity=0.046 Sum_probs=85.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 194 (1206)
...-|.|.|+.|+|||+||+++++... ++..-.+.+++++.-... . +..+.+ .+...+...+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~-~-~e~iQk-------------~l~~vfse~~~~ 493 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGS-S-LEKIQK-------------FLNNVFSEALWY 493 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccch-h-HHHHHH-------------HHHHHHHHHHhh
Confidence 446789999999999999999997433 444444555655532110 0 111111 112234455567
Q ss_pred CceEEEEeCCCccC------HhhHHh-------h----hccCCCCCCCcEEEEEccchHHH-hhcC----CCCceeCCCC
Q 045303 195 KKFLLVLDDVWNEN------YIRWSE-------L----RCPFVAGAAGSKIVVTTRNLVVA-ERMR----ADPVYQLKKL 252 (1206)
Q Consensus 195 ~~~LlvlDdv~~~~------~~~~~~-------l----~~~l~~~~~~~~iliTtr~~~~~-~~~~----~~~~~~l~~l 252 (1206)
.+-+|||||++... ..+|.. + ...+...+..-++|.|.....-. ..+. -.....+..+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 89999999995311 112211 1 11122222223455555442211 1111 1135678888
Q ss_pred ChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHHHH
Q 045303 253 SDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKTLG 299 (1206)
Q Consensus 253 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 299 (1206)
...+-.++++..... .. .....+...-+..+|+|. |.-+.++.
T Consensus 574 ~~~~R~~IL~~~~s~-~~---~~~~~~dLd~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSK-NL---SDITMDDLDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred chhHHHHHHHHHHHh-hh---hhhhhHHHHHHHHhcCCccchhHHHHH
Confidence 888877777765422 11 111223344477888775 55555443
No 291
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.80 E-value=0.0057 Score=60.09 Aligned_cols=40 Identities=25% Similarity=0.109 Sum_probs=28.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccc-cccceeEEEEEcCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKGWTCVSDD 157 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~ 157 (1206)
..++.+.|+.|+|||.+|+.+++. .. +.....+-++++.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~--l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL--LFVGSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH--HT-SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH--hccCCccchHHHhhhcc
Confidence 468899999999999999999873 33 33334455555443
No 292
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.53 Score=54.73 Aligned_cols=179 Identities=17% Similarity=0.130 Sum_probs=94.7
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
.++-|..+..+.+.+.+.-+.. .+-....-|.++|++|.|||-||.+++.... .-++.+.++
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP---- 735 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP---- 735 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH----
Confidence 4566777777777776654321 0112334688999999999999999987321 234555543
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH-------h----hHHhhhccCCC--CCCCcEE
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY-------I----RWSELRCPFVA--GAAGSKI 228 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------~----~~~~l~~~l~~--~~~~~~i 228 (1206)
+++...+. .+.+...+.+.+.-..++|+++||.+++... . -...+...+-. +-.|.-|
T Consensus 736 ElL~KyIG---------aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i 806 (952)
T KOG0735|consen 736 ELLSKYIG---------ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYI 806 (952)
T ss_pred HHHHHHhc---------ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEE
Confidence 34333322 2233344444555567999999999965321 0 11122222222 1245656
Q ss_pred EEEc-cchHHHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 229 VVTT-RNLVVAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 229 liTt-r~~~~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
+.+| |..-+...+ +-++.+.-..-++.|-.++|...+-.- ..+.....+.++.+++|.-
T Consensus 807 ~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~-----~~~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 807 LAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL-----LKDTDVDLECLAQKTDGFT 870 (952)
T ss_pred EEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc-----CCccccchHHHhhhcCCCc
Confidence 6544 443332221 122334445556677777777654211 1111223455666666654
No 293
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.69 E-value=0.015 Score=59.14 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=55.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
.++.|+|+.|+||||+++.+... ........++. +..+... .... ...+........+.....+.++..+...+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~--~~~~-~~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEF--VHES-KRSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccc--cccC-ccceeeecccCCCccCHHHHHHHHhcCCc
Confidence 47899999999999999887763 22222233332 2222110 0000 00000000011122345566777777778
Q ss_pred eEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH
Q 045303 197 FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV 236 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~ 236 (1206)
=.+++|++.+.+ .+....... ..|..++.|+-...
T Consensus 76 d~ii~gEird~e--~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 76 DVILVGEMRDLE--TIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred CEEEEcCCCCHH--HHHHHHHHH---HcCCEEEEEecCCc
Confidence 899999996543 222222221 23445666665433
No 294
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.65 E-value=0.028 Score=62.05 Aligned_cols=45 Identities=18% Similarity=0.094 Sum_probs=35.3
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 91 VYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 91 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
++|+...+.++.+.+..... ...-|.|+|.+|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 47888888888887765432 3346889999999999999998763
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.61 E-value=0.032 Score=58.86 Aligned_cols=87 Identities=17% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC------------------
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT------------------ 175 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------------------ 175 (1206)
+...++.|+|.+|+|||++|.+++... . ..=..++|++.... ..++.+.+. +++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~--~~~~~~~~~-~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENT--SKSYLKQME-SVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCC--HHHHHHHHH-HCCCChhHHHhCCCceEEeccccc
Confidence 456799999999999999999986531 1 22346777777543 444444432 222100
Q ss_pred --CCCCCHHHHHHHHHHHhCC-CceEEEEeCCC
Q 045303 176 --VDDNNLNSLQVKLKERLSG-KKFLLVLDDVW 205 (1206)
Q Consensus 176 --~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~ 205 (1206)
......+.+...+.+.+.. +.-++|+|.+.
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112334566666666653 56689999974
No 296
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.59 E-value=0.6 Score=50.43 Aligned_cols=153 Identities=12% Similarity=0.038 Sum_probs=87.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCccc------c--cccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHH
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRV------Q--RHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVK 187 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~------~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 187 (1206)
.++..++|..|.||+++|..+.+..-. . .+-+...++...+ .....+++.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHHH
Confidence 467779999999999999988763100 0 1111122221101 11122232222
Q ss_pred HHHH-----hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-hHHHhh-cCCCCceeCCCCChhhHHHH
Q 045303 188 LKER-----LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-LVVAER-MRADPVYQLKKLSDDDCLCV 260 (1206)
Q Consensus 188 l~~~-----l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-~~~~~~-~~~~~~~~l~~l~~~e~~~l 260 (1206)
+... -.+++-++|+|+++..+......+...+-....++.+|++|.. ..+... ......+++.++++++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 2211 0146678999999877766666666666665567777765544 333332 23456799999999999887
Q ss_pred HHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 261 LTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
+.... .+ .+.+..++...+|.--|+..+
T Consensus 158 l~~~~-------~~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSKN-------KE---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHcC-------CC---hhHHHHHHHHcCCHHHHHHHH
Confidence 76531 11 234555666667633455553
No 297
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.57 E-value=0.29 Score=53.50 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=34.5
Q ss_pred ceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 246 VYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 246 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
++++++++.+|+..++....-..-- ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877633221 211334556777777789999654
No 298
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.039 Score=61.04 Aligned_cols=90 Identities=17% Similarity=0.099 Sum_probs=50.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-CChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-FDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
+.++++++|+.|+||||++..++.....+.....+..++.... ....+-++...+.++.......+..++...+.+ +.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hc
Confidence 4579999999999999999999873211111123444543221 233445555555555433223333333333333 34
Q ss_pred CCceEEEEeCCCc
Q 045303 194 GKKFLLVLDDVWN 206 (1206)
Q Consensus 194 ~~~~LlvlDdv~~ 206 (1206)
++ -++++|.+-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 5677998843
No 299
>PRK14974 cell division protein FtsY; Provisional
Probab=95.56 E-value=0.079 Score=58.06 Aligned_cols=90 Identities=14% Similarity=0.085 Sum_probs=47.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC--hHHHHHHHHHhccCCCC---CCCCHHHH-HHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD--VPRVTKSILESIANVTV---DDNNLNSL-QVKL 188 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 188 (1206)
++.++.++|++|+||||++..++...+. ..+ .++.+. ...+. ..+-++...+.++.... ...++... ...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 5789999999999999988888763221 122 233333 22222 22334445555543221 12233332 2333
Q ss_pred HHHhCCCceEEEEeCCCcc
Q 045303 189 KERLSGKKFLLVLDDVWNE 207 (1206)
Q Consensus 189 ~~~l~~~~~LlvlDdv~~~ 207 (1206)
...-....-+|++|-+-..
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322223348999988543
No 300
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.56 E-value=0.048 Score=53.85 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=27.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC
Q 045303 118 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF 158 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 158 (1206)
++.|+|.+|+|||++|..++... ...-..++|+......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36899999999999999998732 2233456666665443
No 301
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.52 E-value=0.057 Score=66.85 Aligned_cols=136 Identities=13% Similarity=0.038 Sum_probs=72.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
...++|+...+.++.+.+..... ...-|.|+|.+|+|||++|+.++..... .-...+.+.+.... ...+-..+
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r--~~~~~v~i~c~~~~-~~~~~~~l 447 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR--NNRRMVKMNCAAMP-AGLLESDL 447 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC--CCCCeEEEecccCC-hhHhhhhh
Confidence 34699999999998877764322 3347889999999999999999863211 11233344444322 11112222
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCC-----------CCCcEEEEEccch
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAG-----------AAGSKIVVTTRNL 235 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~-----------~~~~~iliTtr~~ 235 (1206)
.....+.. .... ......+. ...+=.|+||+++.........+...+..+ ..+.|||.||...
T Consensus 448 fg~~~~~~-~g~~-~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 448 FGHERGAF-TGAS-AQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cCcccccc-cccc-cchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 21111000 0000 01111121 122346899999876655444444333221 1356888888653
No 302
>PRK09354 recA recombinase A; Provisional
Probab=95.51 E-value=0.025 Score=61.64 Aligned_cols=85 Identities=18% Similarity=0.119 Sum_probs=55.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKL 188 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 188 (1206)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .++.++... ..+...++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 45689999999999999999988763 22333567888887766652 233333211 1233455555555
Q ss_pred HHHhC-CCceEEEEeCCC
Q 045303 189 KERLS-GKKFLLVLDDVW 205 (1206)
Q Consensus 189 ~~~l~-~~~~LlvlDdv~ 205 (1206)
...++ +..-+||+|.+.
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55543 456689999984
No 303
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.51 E-value=0.36 Score=54.54 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.++.+|.++|.+|+||||+|..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999888763
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.46 E-value=0.064 Score=58.60 Aligned_cols=91 Identities=14% Similarity=0.071 Sum_probs=54.2
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILESIANVTVDDNNLNSLQVKLKERL 192 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 192 (1206)
.+.++++|+|+.|+||||++..++... ...-..+.+++..... ...+-++...+.++.......+.+++...+...-
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l--~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQL--LKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT 281 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH
Confidence 356899999999999999998887632 2222345566554332 2233445555555443323345666655554432
Q ss_pred C-CCceEEEEeCCCc
Q 045303 193 S-GKKFLLVLDDVWN 206 (1206)
Q Consensus 193 ~-~~~~LlvlDdv~~ 206 (1206)
. +..-+|++|-+-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 3456888898744
No 305
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.46 E-value=0.042 Score=59.84 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=40.8
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccc----cccceeEEEEEcCCCChHHHHHHHHHhcc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQIKGWTCVSDDFDVPRVTKSILESIA 172 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 172 (1206)
...+++-|+|.+|+|||+++.+++-..... ..-..++|++....++++++.+ ++++++
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 456799999999999999998876421211 1124688999888888777654 455554
No 306
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.45 E-value=0.032 Score=59.05 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=39.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccc----cccceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
...+.=|+|.+|+|||+||.+++-..... +.-..++|++....+....+. +|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 44699999999999999998776432222 122468899988888877765 455554
No 307
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.45 E-value=0.032 Score=55.73 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++.+|+|.|.+|+||||+|++++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 308
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.058 Score=60.34 Aligned_cols=89 Identities=12% Similarity=0.110 Sum_probs=51.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCccccc--ccceeEEEEEcCCCChH--HHHHHHHHhccCCCCCCCCHHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQR--HFQIKGWTCVSDDFDVP--RVTKSILESIANVTVDDNNLNSLQVKLKE 190 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~--~f~~~~wv~~~~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~ 190 (1206)
+.+++.++|+.|+||||.+..++....... +-..+..+++. .+... +-++...+.++.+-......+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 467999999999999999988886332211 11234444443 33222 22455555554433333444555554544
Q ss_pred HhCCCceEEEEeCCCc
Q 045303 191 RLSGKKFLLVLDDVWN 206 (1206)
Q Consensus 191 ~l~~~~~LlvlDdv~~ 206 (1206)
. .+.-+|++|.+..
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4456899998854
No 309
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.43 E-value=0.057 Score=56.55 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.3
Q ss_pred CCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 113 DDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 113 ~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++..+++|.|+.|+|||||++.+..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35678999999999999999998886
No 310
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.43 E-value=0.055 Score=65.83 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=83.5
Q ss_pred CCccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
-.++.|.+...+++.+...-... ....-.+-+.++|++|+|||++|+.++.. ....| +.++..
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f-----~~is~~---- 219 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF-----FTISGS---- 219 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE-----EEEehH----
Confidence 34577877776666555432110 00112345899999999999999999873 22222 222211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC----------HhhHHhhhcc----CCC--CCCC
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN----------YIRWSELRCP----FVA--GAAG 225 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~~~~~l~~~----l~~--~~~~ 225 (1206)
++.. ... ......+...+...-...+++|++|+++... ...+...... +.. ...+
T Consensus 220 ~~~~----~~~-----g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 220 DFVE----MFV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred HhHH----hhh-----cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 1111 110 1112223333333344578999999986531 0111111111 111 1245
Q ss_pred cEEEEEccchHHHh-hc----CCCCceeCCCCChhhHHHHHHHhhh
Q 045303 226 SKIVVTTRNLVVAE-RM----RADPVYQLKKLSDDDCLCVLTQISL 266 (1206)
Q Consensus 226 ~~iliTtr~~~~~~-~~----~~~~~~~l~~l~~~e~~~l~~~~~~ 266 (1206)
..+|.||...+... .. +-...+.+...+.++-.++++.+..
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 55666777654322 11 2345778888888888888887653
No 311
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.41 E-value=0.11 Score=56.30 Aligned_cols=53 Identities=25% Similarity=0.205 Sum_probs=35.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILES 170 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 170 (1206)
...++.|.|.+|+|||+++.+++.... ..+-..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHH
Confidence 345889999999999999998876421 12124577776654 345555555444
No 312
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.38 E-value=0.016 Score=56.81 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=42.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCC---CCCHHHHHHHHHHHhCC
Q 045303 118 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVD---DNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~ 194 (1206)
++.|.|.+|+|||++|..++... .. ...++......+ .+....+.......... -.....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~~-~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPFD-DEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCCh-HHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68999999999999999988631 11 233333333333 34444543333222111 01122344444443332
Q ss_pred CceEEEEeCC
Q 045303 195 KKFLLVLDDV 204 (1206)
Q Consensus 195 ~~~LlvlDdv 204 (1206)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 337888987
No 313
>PRK07667 uridine kinase; Provisional
Probab=95.38 E-value=0.021 Score=57.82 Aligned_cols=38 Identities=18% Similarity=0.434 Sum_probs=29.5
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 98 KEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 98 ~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+++|.+.+.... ++..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666665432 35589999999999999999999873
No 314
>PRK05439 pantothenate kinase; Provisional
Probab=95.37 E-value=0.082 Score=56.97 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=23.0
Q ss_pred CCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 113 DDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 113 ~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+.+-+|+|.|.+|+||||+|+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34678999999999999999998876
No 315
>PRK10867 signal recognition particle protein; Provisional
Probab=95.34 E-value=0.051 Score=61.66 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+.++.++|++|+||||+|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998887776
No 316
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.33 E-value=0.062 Score=57.44 Aligned_cols=89 Identities=13% Similarity=0.087 Sum_probs=48.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh--HHHHHHHHHhccCCC---CCCCCHHH-HHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV--PRVTKSILESIANVT---VDDNNLNS-LQVK 187 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~---~~~~~~~~-~~~~ 187 (1206)
.+.++++++|++|+||||++..++... ...-..+.+++.. .+.. .+-+....+..+... ....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 356899999999999999998887632 2222345555443 2222 223333444443221 11223322 2334
Q ss_pred HHHHhCCCceEEEEeCCC
Q 045303 188 LKERLSGKKFLLVLDDVW 205 (1206)
Q Consensus 188 l~~~l~~~~~LlvlDdv~ 205 (1206)
+.....+..-++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444444445688899774
No 317
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.31 E-value=0.022 Score=61.25 Aligned_cols=51 Identities=24% Similarity=0.410 Sum_probs=45.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...|+|.++.++++++.+.....+.+.+-+|+.+.|+.|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999877665667789999999999999999988876
No 318
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.29 E-value=0.055 Score=61.36 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
++.++.++|.+|+||||+|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999999888763
No 319
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.076 Score=56.05 Aligned_cols=90 Identities=22% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-CCCCCHHH---HHHHH
Q 045303 113 DDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-VDDNNLNS---LQVKL 188 (1206)
Q Consensus 113 ~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~---~~~~l 188 (1206)
-++.+++=|+|+.|+||||+|.+++-. ....-..++|++..+.+++..+..-....+.... ..+.+.++ +++.+
T Consensus 57 l~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 57 LPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred cccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 356789999999999999999888763 2333347899999998887765433332121111 12233333 33333
Q ss_pred HHHhCCCceEEEEeCC
Q 045303 189 KERLSGKKFLLVLDDV 204 (1206)
Q Consensus 189 ~~~l~~~~~LlvlDdv 204 (1206)
.+....+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 3433444568899988
No 320
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=0.13 Score=51.21 Aligned_cols=51 Identities=27% Similarity=0.219 Sum_probs=36.7
Q ss_pred CccccchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDN-------LRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.++-|-+-+.+++.+...-+- +-+-+.++-|.++|++|.|||.||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345677777777766653211 112346778899999999999999999985
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.11 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-.+++|.|+.|.|||||++.++.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999863
No 322
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.24 E-value=0.13 Score=50.93 Aligned_cols=114 Identities=18% Similarity=0.181 Sum_probs=57.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCc---ccccc---cc--eeEEEEEcCCCChHHHHHHHHHhccCCCC-CC-----CCH
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDD---RVQRH---FQ--IKGWTCVSDDFDVPRVTKSILESIANVTV-DD-----NNL 181 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~---~~~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-~~-----~~~ 181 (1206)
-.+++|.|+.|+|||||.+.+..+. ++... |. .+.|+ .+ .+.++.++.... .. -+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999885321 11111 10 12222 11 345555543221 11 111
Q ss_pred HH-HHHHHHHHhCCC--ceEEEEeCCCcc-CHhhHHhhhccCCC-CCCCcEEEEEccchHHHh
Q 045303 182 NS-LQVKLKERLSGK--KFLLVLDDVWNE-NYIRWSELRCPFVA-GAAGSKIVVTTRNLVVAE 239 (1206)
Q Consensus 182 ~~-~~~~l~~~l~~~--~~LlvlDdv~~~-~~~~~~~l~~~l~~-~~~~~~iliTtr~~~~~~ 239 (1206)
.+ ..-.+.+.+..+ +-++++|+.-.. +......+...+.. ...|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 11 222344555556 778899987432 11222222222221 114667888888876543
No 323
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.24 E-value=0.14 Score=48.96 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=53.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCH-HHHHHHHHHHhCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNL-NSLQVKLKERLSG 194 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~~ 194 (1206)
-.+++|.|..|.|||||++.+.... ....+.+|+.-. ..+.-.. .-+. ....-.+.+.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~-------------~~i~~~~--~lS~G~~~rv~laral~~ 87 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGST-------------VKIGYFE--QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCe-------------EEEEEEc--cCCHHHHHHHHHHHHHhc
Confidence 3589999999999999999998632 122333333110 0000000 0111 1222234555666
Q ss_pred CceEEEEeCCCcc-CHhhHHhhhccCCCCCCCcEEEEEccchHHH
Q 045303 195 KKFLLVLDDVWNE-NYIRWSELRCPFVAGAAGSKIVVTTRNLVVA 238 (1206)
Q Consensus 195 ~~~LlvlDdv~~~-~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~ 238 (1206)
++-++++|+.... +......+...+... +..||++|.+....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 7778999987432 222222232222222 24677777775544
No 324
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.19 E-value=0.16 Score=50.93 Aligned_cols=120 Identities=18% Similarity=0.137 Sum_probs=60.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEc--CCCChHHH------HHHHHHhccCCCC-----CCCCH-
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVS--DDFDVPRV------TKSILESIANVTV-----DDNNL- 181 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~------~~~i~~~l~~~~~-----~~~~~- 181 (1206)
-.+++|.|..|+|||||++.++... ....+.+++.-. ...+.... ..++++.++.... ..-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 3599999999999999999998632 122333333211 11121111 1123444433211 11111
Q ss_pred HHHHHHHHHHhCCCceEEEEeCCCcc-CHhhHHhhhccCCCC-CC-CcEEEEEccchHHH
Q 045303 182 NSLQVKLKERLSGKKFLLVLDDVWNE-NYIRWSELRCPFVAG-AA-GSKIVVTTRNLVVA 238 (1206)
Q Consensus 182 ~~~~~~l~~~l~~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~-~~~iliTtr~~~~~ 238 (1206)
....-.+.+.+...+-++++|+.-.. +......+...+... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 12223355666677889999987432 222222232222221 12 56788888776543
No 325
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.16 Score=51.11 Aligned_cols=50 Identities=30% Similarity=0.235 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++-|-.++++++.+...-+-- -+-+.++-|.++|++|.|||-.|++|++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 4456778888888776543221 1234567889999999999999999998
No 326
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.55 Score=55.22 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=83.8
Q ss_pred CccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 162 (1206)
+++=|-++...+|.+-+.-+-. .+-.+..-|.++|++|.|||-+|++|+.. .. ..|+++.++ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH----H
Confidence 4566888888888876643110 01123456789999999999999999973 21 234455443 2
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH---------hhHHhhhccCC-------C-CCCC
Q 045303 163 VTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY---------IRWSELRCPFV-------A-GAAG 225 (1206)
Q Consensus 163 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---------~~~~~l~~~l~-------~-~~~~ 225 (1206)
++.-.. ..+.+.+.+.+.+.-..++|+|+||.+++... .-++.+.+++. . ...+
T Consensus 741 LLNMYV---------GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 741 LLNMYV---------GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred HHHHHh---------cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 222221 12334445555555567899999999975321 12333333322 1 1233
Q ss_pred cEEEEEccchHHHh-----hcCCCCceeCCCCChhhHHH
Q 045303 226 SKIVVTTRNLVVAE-----RMRADPVYQLKKLSDDDCLC 259 (1206)
Q Consensus 226 ~~iliTtr~~~~~~-----~~~~~~~~~l~~l~~~e~~~ 259 (1206)
.-||-+|-.+++.. .-+-++.+.|++=+.++...
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 44555555444321 11234566677666666544
No 327
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.17 E-value=0.045 Score=57.44 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=51.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccc-eeEEEEEcCCC-ChHHHHHHHHHhccCC------CCCCCCHH----
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKGWTCVSDDF-DVPRVTKSILESIANV------TVDDNNLN---- 182 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~---- 182 (1206)
+-.-++|.|.+|+|||+||+.+++. .+.+|. .++++.+++.. ++.++..++.+.-... ...++...
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 4457899999999999999999983 443443 44555555543 4555555555431111 01111111
Q ss_pred --HHHHHHHHHh---CCCceEEEEeCC
Q 045303 183 --SLQVKLKERL---SGKKFLLVLDDV 204 (1206)
Q Consensus 183 --~~~~~l~~~l---~~~~~LlvlDdv 204 (1206)
...-.+.+++ .++.+|+++||+
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1112234444 388999999998
No 328
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.14 E-value=0.075 Score=63.05 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=40.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
....++|+...++++.+.+..... ...-|.|+|..|+|||++|+.++..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 456799999999999998876432 3457889999999999999999873
No 329
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.13 E-value=0.18 Score=51.16 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=35.8
Q ss_pred HHHHHHHHHhCCCceEEEEeCC----CccCHhhHHhhhccCCCCCCCcEEEEEccchHHHhhcC
Q 045303 183 SLQVKLKERLSGKKFLLVLDDV----WNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAERMR 242 (1206)
Q Consensus 183 ~~~~~l~~~l~~~~~LlvlDdv----~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~~~ 242 (1206)
+..-++.+.+..++-+|+.|+- +..+......+...+. ...|..||+.|.++.++..+.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhCC
Confidence 3344577778888889999964 3322222222222221 235778999999999887543
No 330
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.10 E-value=0.11 Score=50.32 Aligned_cols=117 Identities=19% Similarity=0.114 Sum_probs=58.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeE---EEEEcCCCChHHHHHHHHHhc---cCC-CCCCCCH-------H
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKG---WTCVSDDFDVPRVTKSILESI---ANV-TVDDNNL-------N 182 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~---wv~~~~~~~~~~~~~~i~~~l---~~~-~~~~~~~-------~ 182 (1206)
..|-|++..|.||||.|...+. +...+=..+. |+.-.........+..+.-.+ +.. .....+. .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5788888899999999976654 2222222222 222221223233333320000 000 0000111 1
Q ss_pred HHHHHHHHHhC-CCceEEEEeCCCc---cCHhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 183 SLQVKLKERLS-GKKFLLVLDDVWN---ENYIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 183 ~~~~~l~~~l~-~~~~LlvlDdv~~---~~~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
+..+..++.+. ++--++|||.+-. ......+++...+.....+..||+|.|..
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12223344443 4456999999832 11233445555555566778999999985
No 331
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.73 Score=46.39 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=38.7
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+++-|-+++++++++++.-+.. -+-..++-|..+|++|.|||-+|++.+.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAa 227 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAA 227 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHH
Confidence 5677899999999998753321 0123567889999999999999998876
No 332
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.08 E-value=0.15 Score=52.65 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=67.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcc-----cc--c----cc---ceeEEEEEcCCC------Ch----------------
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDR-----VQ--R----HF---QIKGWTCVSDDF------DV---------------- 160 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~-----~~--~----~f---~~~~wv~~~~~~------~~---------------- 160 (1206)
.+++|.|+.|.|||||.+.+.--.. +. + .. ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6999999999999999999976211 10 0 01 134444221111 11
Q ss_pred ------HHHHHHHHHhccCCCCCC-----CCHHHH-HHHHHHHhCCCceEEEEeCC----CccCHhhHHhhhccCCCCCC
Q 045303 161 ------PRVTKSILESIANVTVDD-----NNLNSL-QVKLKERLSGKKFLLVLDDV----WNENYIRWSELRCPFVAGAA 224 (1206)
Q Consensus 161 ------~~~~~~i~~~l~~~~~~~-----~~~~~~-~~~l~~~l~~~~~LlvlDdv----~~~~~~~~~~l~~~l~~~~~ 224 (1206)
.+...+.+++++...... -+-.+. .-.+.+.|..++=|++||.- |.........+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 133444455544332211 111222 23466778889999999964 333344444555555543
Q ss_pred CcEEEEEccchHHH
Q 045303 225 GSKIVVTTRNLVVA 238 (1206)
Q Consensus 225 ~~~iliTtr~~~~~ 238 (1206)
|..||+.|-+-...
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 88899999886544
No 333
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.04 E-value=0.023 Score=58.00 Aligned_cols=64 Identities=22% Similarity=0.187 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 97 EKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 97 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
+..++++.+... .++..+|+|+|+||+|||||+.++....+.+++=-.++-|+-+.+++--.++
T Consensus 14 ~~~~ll~~l~~~----~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPH----TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGG----TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhh----cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 455666666543 2467899999999999999999888744333332344445555555544443
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.04 E-value=0.089 Score=52.42 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++.++|++|+||||++..++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999988876
No 335
>PRK13695 putative NTPase; Provisional
Probab=95.04 E-value=0.035 Score=55.33 Aligned_cols=22 Identities=45% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-++|+|.+|+|||||++.++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 336
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.03 E-value=0.025 Score=53.78 Aligned_cols=24 Identities=42% Similarity=0.492 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+|.|+|.+|+||||+|+++.+.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 337
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.99 E-value=0.031 Score=62.03 Aligned_cols=80 Identities=20% Similarity=0.294 Sum_probs=48.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCccc----ccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRV----QRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLK 189 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 189 (1206)
..++=+.|||..|.|||.|...+|+.... +-||. +++.++-+.+........... .+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHH
Confidence 35678999999999999999999985332 22332 344444444332222222233 344
Q ss_pred HHhCCCceEEEEeCCCccCHhh
Q 045303 190 ERLSGKKFLLVLDDVWNENYIR 211 (1206)
Q Consensus 190 ~~l~~~~~LlvlDdv~~~~~~~ 211 (1206)
+.+.++..||.||++.-.+..+
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaD 143 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIAD 143 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhH
Confidence 5556677799999986544333
No 338
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.99 E-value=0.17 Score=50.70 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+++|.|..|+|||||++.++.-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999863
No 339
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.98 E-value=0.045 Score=58.26 Aligned_cols=82 Identities=13% Similarity=0.198 Sum_probs=46.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
.++.|.|..|+||||+++.+... +...-..+ +.+..+.... +.. ..++... ........+.++..++..+
T Consensus 81 GlilisG~tGSGKTT~l~all~~--i~~~~~~i--itiEdp~E~~--~~~-~~q~~v~---~~~~~~~~~~l~~~lR~~P 150 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSE--LNTPEKNI--ITVEDPVEYQ--IPG-INQVQVN---EKAGLTFARGLRAILRQDP 150 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhh--hCCCCCeE--EEECCCceec--CCC-ceEEEeC---CcCCcCHHHHHHHHhccCC
Confidence 58999999999999999988652 22111112 2222221110 000 0111111 1111235566777888889
Q ss_pred eEEEEeCCCccC
Q 045303 197 FLLVLDDVWNEN 208 (1206)
Q Consensus 197 ~LlvlDdv~~~~ 208 (1206)
-.++++++.+.+
T Consensus 151 D~i~vgEiR~~e 162 (264)
T cd01129 151 DIIMVGEIRDAE 162 (264)
T ss_pred CEEEeccCCCHH
Confidence 999999997653
No 340
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.97 E-value=0.094 Score=54.11 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=70.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcC-----CCChHHHHHHHHHhccCCCC------CCCCHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSD-----DFDVPRVTKSILESIANVTV------DDNNLNS 183 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~ 183 (1206)
+..+++|+|.+|+||||+++.+.. ....-.+.++..-.. .....+-..++++.++.... ..-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 346999999999999999999986 222223333332211 12233445666666653321 1112222
Q ss_pred HH-HHHHHHhCCCceEEEEeCCCccCHh----hHHhhhccCCCCCCCcEEEEEccchHHHhhcC
Q 045303 184 LQ-VKLKERLSGKKFLLVLDDVWNENYI----RWSELRCPFVAGAAGSKIVVTTRNLVVAERMR 242 (1206)
Q Consensus 184 ~~-~~l~~~l~~~~~LlvlDdv~~~~~~----~~~~l~~~l~~~~~~~~iliTtr~~~~~~~~~ 242 (1206)
.+ -.+.+.+.-++-++|.|..-+.-.+ +.-.+...+.. ..|-..+..|-+-.++..+.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhc
Confidence 22 2466778889999999987543222 22222222222 24666777778776665543
No 341
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.046 Score=53.99 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.|.|.|++|+||||+|+.+++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 342
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.94 E-value=0.017 Score=54.26 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.2
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045303 119 ISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~ 139 (1206)
|+|.|++|+||||+|+++...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999873
No 343
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.0045 Score=62.42 Aligned_cols=81 Identities=26% Similarity=0.316 Sum_probs=65.4
Q ss_pred HhccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccc--cccccccccEEecCCCcccccccc-----cc
Q 045303 495 LLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPE--SINSLYNLHTILLEDCWKLKKLCK-----DM 567 (1206)
Q Consensus 495 ~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~--~~~~L~~L~~L~L~~n~~~~~lp~-----~~ 567 (1206)
++.+++.|+||.|+-| .+..+- .+..+++|+.|+|..|.|..+.+ -+.+|++|++|-|..|.-.+.-+. .+
T Consensus 36 ic~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VL 113 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVL 113 (388)
T ss_pred HHHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHH
Confidence 3678999999999999 887774 48899999999999999987755 368999999999988854444332 25
Q ss_pred cCCCccceee
Q 045303 568 GNLTKLRHLR 577 (1206)
Q Consensus 568 ~~L~~L~~L~ 577 (1206)
..|++|+.||
T Consensus 114 R~LPnLkKLD 123 (388)
T KOG2123|consen 114 RVLPNLKKLD 123 (388)
T ss_pred HHcccchhcc
Confidence 6788888886
No 344
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.93 E-value=0.071 Score=59.09 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHHhcCCC--------CCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL--------RADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...++|.++..+.+.-++..... ...-.++-+.++|++|+|||++|+.++..
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999998877764210 01123467899999999999999999873
No 345
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.061 Score=50.12 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=31.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccC
Q 045303 118 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIAN 173 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 173 (1206)
+|.|.|++|+||||+|+.++++.... + + +...+++++++..+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-------v----saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-------V----SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-------e----eccHHHHHHHHHcCC
Confidence 68999999999999999999843221 1 1 223678888877654
No 346
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.92 E-value=0.11 Score=55.46 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=21.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 347
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.91 E-value=0.019 Score=46.60 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+++|.|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998873
No 348
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.90 E-value=0.058 Score=59.97 Aligned_cols=22 Identities=41% Similarity=0.632 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|++|+||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999998864
No 349
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.86 E-value=0.016 Score=52.37 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=19.0
Q ss_pred EEEEccCCCcHHHHHHHHhcCcccccccce
Q 045303 119 ISINGMGGVGKTTLAQLVYNDDRVQRHFQI 148 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~~~~~~~f~~ 148 (1206)
|.|+|.+|+|||++|+.++. .....|..
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCceeE
Confidence 67999999999999999997 45556653
No 350
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.86 E-value=0.14 Score=54.00 Aligned_cols=50 Identities=14% Similarity=0.201 Sum_probs=34.4
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
.+..++.|.|.+|+|||++|.++.... ...-..++|++... +..++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 456899999999999999998876531 12234677777654 444555543
No 351
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.82 E-value=0.069 Score=53.34 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+..+++|.|++|+||||+|+.++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999873
No 352
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.81 E-value=0.13 Score=50.54 Aligned_cols=114 Identities=18% Similarity=0.115 Sum_probs=57.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC--CChHHHHHHHHHhccCCCCCCCCH-HHHHHHHHHHhC
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD--FDVPRVTKSILESIANVTVDDNNL-NSLQVKLKERLS 193 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l~ 193 (1206)
.+++|.|..|+|||||.+.++... ....+.+++.-... .+..+..+ +.++... + -+. +...-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-q-LS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY-Q-LSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-e-cCHHHHHHHHHHHHHh
Confidence 589999999999999999998632 22333344321111 11111111 1111100 0 111 122233555566
Q ss_pred CCceEEEEeCCCcc-CHhhHHhhhccCCCC-CCCcEEEEEccchHHH
Q 045303 194 GKKFLLVLDDVWNE-NYIRWSELRCPFVAG-AAGSKIVVTTRNLVVA 238 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~~~~iliTtr~~~~~ 238 (1206)
.++-++++|+.-.. +......+...+... ..+..||++|.+....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 67778999987432 222222232222221 2366788888876543
No 353
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.81 E-value=0.048 Score=58.80 Aligned_cols=85 Identities=22% Similarity=0.181 Sum_probs=50.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKL 188 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 188 (1206)
+.-+++-|+|+.|+||||||..++.. ....-..++|++....++.... +.++... ..+...++..+.+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~a-----~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEYA-----ESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHHH-----HHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhHH-----HhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999888763 3333456789988777665333 3332211 1233445555555
Q ss_pred HHHhC-CCceEEEEeCCC
Q 045303 189 KERLS-GKKFLLVLDDVW 205 (1206)
Q Consensus 189 ~~~l~-~~~~LlvlDdv~ 205 (1206)
...++ +..-++|+|-|.
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 55554 344588899883
No 354
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.78 E-value=0.27 Score=48.39 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-.+++|.|..|.|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 355
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.78 E-value=0.044 Score=50.64 Aligned_cols=41 Identities=32% Similarity=0.288 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 95 EKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 95 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+++.+++.+.+.+.- ....++++.|.-|+||||+++.++..
T Consensus 5 ~~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 5 EKAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred HHHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345566666664422 13458999999999999999999875
No 356
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.74 E-value=0.024 Score=60.49 Aligned_cols=34 Identities=29% Similarity=0.500 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 99 EKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 99 ~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+++.+.... +-|.++|++|+|||++++.+...
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhcc
Confidence 45566665432 57799999999999999988763
No 357
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.74 E-value=0.12 Score=57.18 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=39.9
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCccccc----ccceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
....++-|+|.+|+|||++|.+++....... .-..++|++....++..++. ++++.+
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 3567999999999999999998876422211 11368899988888777654 344444
No 358
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.73 E-value=0.13 Score=56.24 Aligned_cols=57 Identities=19% Similarity=0.090 Sum_probs=38.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCccccc----ccceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
....++.|+|.+|+|||++|..++....... .-..++|++....+...++ .++++.+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 3568999999999999999988874211111 1135688888777776653 3344444
No 359
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.72 E-value=0.17 Score=55.58 Aligned_cols=58 Identities=17% Similarity=0.148 Sum_probs=41.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccc----cccceeEEEEEcCCCChHHHHHHHHHhcc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQIKGWTCVSDDFDVPRVTKSILESIA 172 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 172 (1206)
....++-|+|.+|+|||+|+.+++-..... +.-..++|++....+.+.++.+ +++.++
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 456789999999999999998886422211 1124678999998888877655 455554
No 360
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.71 E-value=0.13 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-.+++|.|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 361
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.69 E-value=0.0016 Score=78.08 Aligned_cols=40 Identities=30% Similarity=0.431 Sum_probs=25.3
Q ss_pred cccccccccCCCCCCCCCCCC---ccccceecccCChhhHHhh
Q 045303 1136 SLKYLYLIDCPKLKYFPEQGL---PKSLLQLHIKGCPLIEERC 1175 (1206)
Q Consensus 1136 ~L~~L~l~~n~~l~~l~~~~~---~~~L~~L~l~~c~~l~~~~ 1175 (1206)
.++.|+++.|...+.--.... ..++..+++.+|+.+....
T Consensus 402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred ccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 378888888865554332111 4567778888888766554
No 362
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.68 E-value=0.1 Score=55.42 Aligned_cols=133 Identities=21% Similarity=0.298 Sum_probs=68.2
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCc-ccccccceeE----EEEEcCCC--------
Q 045303 92 YGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDD-RVQRHFQIKG----WTCVSDDF-------- 158 (1206)
Q Consensus 92 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~-~~~~~f~~~~----wv~~~~~~-------- 158 (1206)
-+|..+-.--+++|.+ +....|.+.|.+|.|||.||-+..-.. ..+..|..++ -+.+++..
T Consensus 227 ~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 227 RPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred CcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 3455555555666654 357899999999999999995543211 1223343222 12222221
Q ss_pred -ChHHHHHHH---HHhccCCCCCCCCHHHHHHHH----------HHHhCCC---ceEEEEeCCCccCHhhHHhhhccCCC
Q 045303 159 -DVPRVTKSI---LESIANVTVDDNNLNSLQVKL----------KERLSGK---KFLLVLDDVWNENYIRWSELRCPFVA 221 (1206)
Q Consensus 159 -~~~~~~~~i---~~~l~~~~~~~~~~~~~~~~l----------~~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~ 221 (1206)
.+..-++.+ ++.+....... +...+.+ -.+.+++ .-++|+|.+.+.+.-+...+ +..
T Consensus 301 eKm~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR 374 (436)
T COG1875 301 EKMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTR 374 (436)
T ss_pred hhccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHh
Confidence 111111222 22222211111 1111111 1122333 46899999988765554443 334
Q ss_pred CCCCcEEEEEccchH
Q 045303 222 GAAGSKIVVTTRNLV 236 (1206)
Q Consensus 222 ~~~~~~iliTtr~~~ 236 (1206)
.++|+||+.|.-...
T Consensus 375 ~G~GsKIVl~gd~aQ 389 (436)
T COG1875 375 AGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccCCCEEEEcCCHHH
Confidence 578999999976543
No 363
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.68 E-value=0.14 Score=66.56 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.++-|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4567889999999999999999985
No 364
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.67 E-value=0.097 Score=54.11 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 365
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.023 Score=55.89 Aligned_cols=25 Identities=48% Similarity=0.525 Sum_probs=22.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDD 140 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~ 140 (1206)
..+|+|-||-|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4699999999999999999999843
No 366
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.66 E-value=0.023 Score=57.78 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
||+|.|++|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 367
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.63 E-value=0.026 Score=54.20 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|.+.|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999985
No 368
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.61 E-value=0.07 Score=51.37 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++.|+|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 369
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.58 E-value=0.0029 Score=61.97 Aligned_cols=86 Identities=15% Similarity=0.206 Sum_probs=75.0
Q ss_pred hccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccce
Q 045303 496 LNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 575 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 575 (1206)
+..++..++||++.| .+..+-..|+.+..|..|+++.|.|..+|..+..+..++.+++..| .....|.+++.++++++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 456788899999998 7777777788899999999999999999999999999999999888 78889999999999999
Q ss_pred eecCCCCc
Q 045303 576 LRNSNADE 583 (1206)
Q Consensus 576 L~l~~n~~ 583 (1206)
+++.++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99888763
No 370
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.58 E-value=0.2 Score=55.16 Aligned_cols=58 Identities=19% Similarity=0.139 Sum_probs=40.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccc----cccceeEEEEEcCCCChHHHHHHHHHhcc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQIKGWTCVSDDFDVPRVTKSILESIA 172 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 172 (1206)
....++-|+|.+|+|||++|..++...... ..-..++|++....+.++++. ++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 356789999999999999998777421111 111368899999888877764 4455543
No 371
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.57 E-value=0.036 Score=57.31 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-|+|.|++|+||||+|+.++..
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999873
No 372
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.56 E-value=0.06 Score=60.07 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=48.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
..+.|.|+.|+||||+++.+... ........++. +..+.. ....-...+................++..+...+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E---~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIE---YVHRNKRSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChh---hhccCccceEEccccCCCCcCHHHHHHHhhccCC
Confidence 58999999999999999988762 33233334443 222211 1100000000000111122345666788888899
Q ss_pred eEEEEeCCCccC
Q 045303 197 FLLVLDDVWNEN 208 (1206)
Q Consensus 197 ~LlvlDdv~~~~ 208 (1206)
=.|++|++.+.+
T Consensus 197 d~i~vgEird~~ 208 (343)
T TIGR01420 197 DVILIGEMRDLE 208 (343)
T ss_pred CEEEEeCCCCHH
Confidence 999999996543
No 373
>PTZ00301 uridine kinase; Provisional
Probab=94.55 E-value=0.04 Score=56.09 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+|+|.|.+|+||||+|+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 46999999999999999998876
No 374
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.55 E-value=0.037 Score=57.33 Aligned_cols=64 Identities=22% Similarity=0.217 Sum_probs=42.7
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 99 EKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 99 ~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.+++..+... .++..+|+|+|.||+|||||..++....+.+++--.++-|+-+.+++--.++-+
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 3455555432 357789999999999999999888775443444334555666677665555443
No 375
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.54 E-value=0.12 Score=57.14 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccc----cceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
....++-|+|++|+|||++|.+++........ -..++|++....+++.++.+. ++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~-~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM-AEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH-HHHc
Confidence 35679999999999999999988763222111 147889998887777666543 3443
No 376
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.53 E-value=0.099 Score=50.76 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+.+.++|.||+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46788999999999999999873
No 377
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.49 E-value=0.11 Score=55.39 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=29.8
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSD 156 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 156 (1206)
....++.|+|.+|+|||++|.+++... ...-..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 356799999999999999999987632 12234567777653
No 378
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.48 E-value=0.17 Score=50.38 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|.|..|.|||||++.++.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999986
No 379
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.48 E-value=0.052 Score=49.61 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=41.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
.+-|.|+|.||+||||+|.+++... ..-|+.++.-.....+....-+... ...-+.+.+.+.+...+.+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~gyDE~y~---c~i~DEdkv~D~Le~~m~~G 76 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEGYDEEYK---CHILDEDKVLDELEPLMIEG 76 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhccccccc---CccccHHHHHHHHHHHHhcC
Confidence 3467899999999999999998621 2335666554333333322222221 22345566666666666544
Q ss_pred ce
Q 045303 196 KF 197 (1206)
Q Consensus 196 ~~ 197 (1206)
.+
T Consensus 77 g~ 78 (176)
T KOG3347|consen 77 GN 78 (176)
T ss_pred Cc
Confidence 43
No 380
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.43 E-value=0.063 Score=48.43 Aligned_cols=51 Identities=18% Similarity=0.314 Sum_probs=37.7
Q ss_pred CccccchhHHHHHHHHHhcCCC-CCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-RADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++|.+-..+.+.+++..--. ....++-|++++|++|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4578888777777766654221 12457789999999999999999888764
No 381
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.40 E-value=0.034 Score=57.43 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.+..+|+|.|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 36789999999999999999999873
No 382
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.40 E-value=0.13 Score=48.24 Aligned_cols=58 Identities=16% Similarity=0.011 Sum_probs=18.1
Q ss_pred ccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 989 LHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 989 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
|.++++|+.+.+.. .....-...|.++++|+.+.+.++ +...-...|.++++|+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITF 65 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccc
Confidence 33444444444442 122222223444444444444332 22222233444444444444
No 383
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.63 Score=51.57 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=38.2
Q ss_pred EEEEccchHHHh-h-c---CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhh
Q 045303 228 IVVTTRNLVVAE-R-M---RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL 302 (1206)
Q Consensus 228 iliTtr~~~~~~-~-~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 302 (1206)
||.||-..+-.. + + +-+..+.+.-=+.+....|+........ ....+.+|.+...|.-+.=..++..+
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~-------~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE-------DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC-------CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 556776543221 1 1 1223567777788888888888763322 12455666665566555545555544
No 384
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.38 E-value=0.1 Score=57.97 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=39.0
Q ss_pred CCccccchhHHHHHHHHHhcCC--------CCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDN--------LRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...++|.++..+.+..++.... .......+.+.++|++|+|||++|+.++..
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999988885410 000112467899999999999999999873
No 385
>PRK06762 hypothetical protein; Provisional
Probab=94.38 E-value=0.032 Score=55.19 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+++|.|+|++|+||||+|+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 386
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.37 E-value=0.035 Score=58.91 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=18.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+.|.|+|.||+||||+|+++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999999873
No 387
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.36 E-value=0.14 Score=47.98 Aligned_cols=116 Identities=21% Similarity=0.118 Sum_probs=55.1
Q ss_pred CcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeee
Q 045303 970 SLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIR 1049 (1206)
Q Consensus 970 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 1049 (1206)
+|+.+.+.. .....-...|.++++|+.+.+.++ ....-...+.++++|+.+.+.+ .........|..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 455555543 222223455778888999999875 4444445677887899999965 4444445577788999999987
Q ss_pred cCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcc
Q 045303 1050 GCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLR 1092 (1206)
Q Consensus 1050 ~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 1092 (1206)
.+ +....... ... +|+.+.+..+ +. .++...|.++++|+
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~~-~~-~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPSN-IT-KIEENAFKNCTKLK 129 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TTB--S-S----GGG------
T ss_pred cc-ccEEchhhhcCC-CceEEEECCC-cc-EECCccccccccCC
Confidence 65 33222222 344 7777777653 22 34555676666553
No 388
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.33 E-value=0.1 Score=53.07 Aligned_cols=120 Identities=13% Similarity=0.078 Sum_probs=58.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHH---HHHHH-
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQV---KLKER- 191 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~~~- 191 (1206)
.+++.|.|+.|.||||+.+.++... ... ....++.+.. .. ..+...+...+............... .+...
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la--~~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMA--QIGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHH--HcCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999998886421 111 1111221111 01 12222333333222111111111111 11111
Q ss_pred -hCCCceEEEEeCCCccC-HhhH----HhhhccCCCCCCCcEEEEEccchHHHhhcC
Q 045303 192 -LSGKKFLLVLDDVWNEN-YIRW----SELRCPFVAGAAGSKIVVTTRNLVVAERMR 242 (1206)
Q Consensus 192 -l~~~~~LlvlDdv~~~~-~~~~----~~l~~~l~~~~~~~~iliTtr~~~~~~~~~ 242 (1206)
+..++-|+++|+..... ..+. ..+...+.. .+..+|++|-..+++....
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 23567899999984432 1121 122223332 3788999999988776544
No 389
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.33 E-value=0.17 Score=55.52 Aligned_cols=89 Identities=13% Similarity=0.035 Sum_probs=51.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-CChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-FDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
+.++++++|+.||||||....++........=..++.++...- ....+-++..++-++.+-....+..++..++... +
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~ 280 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-R 280 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-h
Confidence 3689999999999999877666553221122234555555332 2333444555555555544456666666655443 3
Q ss_pred CCceEEEEeCCC
Q 045303 194 GKKFLLVLDDVW 205 (1206)
Q Consensus 194 ~~~~LlvlDdv~ 205 (1206)
+. -+|.+|-+-
T Consensus 281 ~~-d~ILVDTaG 291 (407)
T COG1419 281 DC-DVILVDTAG 291 (407)
T ss_pred cC-CEEEEeCCC
Confidence 33 466678763
No 390
>PRK06547 hypothetical protein; Provisional
Probab=94.32 E-value=0.039 Score=54.32 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999863
No 391
>PRK05973 replicative DNA helicase; Provisional
Probab=94.30 E-value=0.1 Score=53.93 Aligned_cols=49 Identities=12% Similarity=0.060 Sum_probs=32.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
+..++.|.|.+|+|||++|.+++.... ..-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 446899999999999999998876321 22234566655443 44444444
No 392
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.29 E-value=0.24 Score=52.66 Aligned_cols=127 Identities=15% Similarity=0.049 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEE---EcCCCChHHHHHHHHHhccC
Q 045303 97 EKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTC---VSDDFDVPRVTKSILESIAN 173 (1206)
Q Consensus 97 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~ 173 (1206)
..+.+...+.+. +..+-++|.|+.|+|||||.+.++... . ...+.+++. +....+..++...+ ..+..
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~--~-~~~G~i~~~g~~v~~~d~~~ei~~~~-~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL--S-TGISQLGLRGKKVGIVDERSEIAGCV-NGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc--C-CCCceEEECCEEeecchhHHHHHHHh-ccccc
Confidence 344455555432 235689999999999999999998732 2 122223321 11111112222111 11100
Q ss_pred CC----CC-CCCHHHHHHHHHHHh-CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHH
Q 045303 174 VT----VD-DNNLNSLQVKLKERL-SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVA 238 (1206)
Q Consensus 174 ~~----~~-~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~ 238 (1206)
.. .+ -..... ...+...+ ...+-++++|.+.. ...+..+...+. .|..+|+||.+..+.
T Consensus 168 ~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 168 HDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred ccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 00 00 011111 11122222 35788999999853 334454444432 477899999875553
No 393
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.28 E-value=0.77 Score=48.95 Aligned_cols=132 Identities=8% Similarity=-0.043 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc-c----------cceeEEEEEcCCCChHHHHH
Q 045303 97 EKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-H----------FQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 97 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~-~----------f~~~~wv~~~~~~~~~~~~~ 165 (1206)
..+++...+.... -.....++|+.|+||+++|..++...-... . .+...|+.-...
T Consensus 5 ~~~~L~~~i~~~r-----l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-------- 71 (290)
T PRK05917 5 AWEALIQRVRDQK-----VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-------- 71 (290)
T ss_pred HHHHHHHHHHcCC-----cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC--------
Confidence 4556666665432 356788999999999999988876311100 0 011111100000
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHh
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAE 239 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~ 239 (1206)
......++.. .+.+.+ .++.-++|+|+++..+...+..+..-+-....++.+|++|... .+..
T Consensus 72 ----------~~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 72 ----------GRLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred ----------CCcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 0001233322 233333 2445588999999888778888777776655677766666653 3332
Q ss_pred h-cCCCCceeCCCC
Q 045303 240 R-MRADPVYQLKKL 252 (1206)
Q Consensus 240 ~-~~~~~~~~l~~l 252 (1206)
. ......+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 2 122344555544
No 394
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.28 E-value=0.15 Score=50.31 Aligned_cols=118 Identities=19% Similarity=0.099 Sum_probs=60.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC---CChHHHHHHH--HHhc--cCC-CCCCCCHH-----
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD---FDVPRVTKSI--LESI--ANV-TVDDNNLN----- 182 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~i--~~~l--~~~-~~~~~~~~----- 182 (1206)
...|.|+|..|-||||.|...+. |...+=..+..+..-.. .....++..+ +... +.. .....+.+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 35889999999999999966654 22222222333332222 2333333321 0000 000 00111111
Q ss_pred --HHHHHHHHHhC-CCceEEEEeCCCcc---CHhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 183 --SLQVKLKERLS-GKKFLLVLDDVWNE---NYIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 183 --~~~~~l~~~l~-~~~~LlvlDdv~~~---~~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
...+..++.+. ++--++|||.+-.. .....+++...+.....+..||+|-|..
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223344443 45569999998321 2233455555555566778999999984
No 395
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.24 E-value=0.18 Score=60.19 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++.|+|.+|.||||+++.+..
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~ 189 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLA 189 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999988875
No 396
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.16 E-value=0.34 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4689999999999999999873
No 397
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.14 E-value=0.043 Score=56.46 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++..+|+|+|++|+||||||+.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3557999999999999999999986
No 398
>PTZ00035 Rad51 protein; Provisional
Probab=94.13 E-value=0.3 Score=54.07 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=38.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccc----cccceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
....++.|+|.+|+|||+++..++...... ..-..++|++....++..++ .++++.+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~ 176 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERF 176 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHh
Confidence 456799999999999999998887432211 11235668887777776663 3344444
No 399
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.091 Score=49.85 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..++-++|.+|.||||+|.+++.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHH
Confidence 3567999999999999999999987
No 400
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.06 E-value=0.032 Score=33.13 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=13.5
Q ss_pred cccEEecCCCcccccccccccC
Q 045303 548 NLHTILLEDCWKLKKLCKDMGN 569 (1206)
Q Consensus 548 ~L~~L~L~~n~~~~~lp~~~~~ 569 (1206)
+|++|||++| .+..+|.+|++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 4677777777 55566666554
No 401
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.06 E-value=0.22 Score=50.75 Aligned_cols=41 Identities=29% Similarity=0.282 Sum_probs=26.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCccccccc--------ceeEEEEEcCC
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHF--------QIKGWTCVSDD 157 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f--------~~~~wv~~~~~ 157 (1206)
.++.|+|++|+|||+++.+++........| ..+.|+.....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999998887643222112 35667666554
No 402
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.04 E-value=0.032 Score=50.11 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045303 119 ISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~ 139 (1206)
|.|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998763
No 403
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=94.04 E-value=0.37 Score=50.34 Aligned_cols=121 Identities=19% Similarity=0.154 Sum_probs=74.7
Q ss_pred CCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 85 LVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 85 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
....++|+|-..... +..++.... ...+.+.++|++|+|||+-++.++.. .+..+.+..+..++...+.
T Consensus 68 ~~~~~~~l~tkt~r~-~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i 136 (297)
T COG2842 68 EKLAPDFLETKTVRR-IFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLI 136 (297)
T ss_pred ccccccccccchhHh-Hhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHH
Confidence 334567777665432 233332221 23348899999999999999999873 1223333455556666666
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhcc
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCP 218 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~ 218 (1206)
..+........ ..........+...+.+..-+++.|+.+......++.+..-
T Consensus 137 ~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i 188 (297)
T COG2842 137 LIICAAAFGAT--DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRI 188 (297)
T ss_pred HHHHHHHhccc--chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHH
Confidence 66655554322 23344455556666788888999999987766666665543
No 404
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.04 E-value=1.5 Score=46.91 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=45.9
Q ss_pred CCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhhc-CCCCceeCCCCChhhHHHHHHH
Q 045303 194 GKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERM-RADPVYQLKKLSDDDCLCVLTQ 263 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~~-~~~~~~~l~~l~~~e~~~l~~~ 263 (1206)
+++-++|+|+++..+...+..+...+-....++.+|++|.+. .+.... .....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 456689999999888778888877776666667777777654 333322 2334667766 66666666653
No 405
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.02 E-value=1.9 Score=47.84 Aligned_cols=74 Identities=24% Similarity=0.250 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC--ChHHHHHHHHHhcc
Q 045303 98 KEKIIELLLNDNLR---ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF--DVPRVTKSILESIA 172 (1206)
Q Consensus 98 ~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~ 172 (1206)
.++|.+.|...... ....+.||..+|.-|.||||.|..+++..+ . ....+-+.....+ ..-+-++.+.++++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lk--k-~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLK--K-KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHH--H-cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 45666666531110 123578999999999999999988876322 2 2222222233332 23344556666665
Q ss_pred CC
Q 045303 173 NV 174 (1206)
Q Consensus 173 ~~ 174 (1206)
..
T Consensus 156 v~ 157 (451)
T COG0541 156 VP 157 (451)
T ss_pred Cc
Confidence 43
No 406
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.5 Score=47.30 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDR 141 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~ 141 (1206)
--+-+|.|+.|+||||||..+.-++.
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p~ 55 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHPK 55 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35889999999999999999987653
No 407
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.99 E-value=0.34 Score=51.42 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=47.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC-
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS- 193 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 193 (1206)
..+++++|.+|+||||+++.+... ....-..+.++...... ...+-++...+.++.......+.+.+...+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~--l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 369999999999999999888753 21111234455443221 11112223333333222223455555544443322
Q ss_pred CCceEEEEeCCCcc
Q 045303 194 GKKFLLVLDDVWNE 207 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~ 207 (1206)
.+.-++++|..-..
T Consensus 153 ~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 153 ARVDYILIDTAGKN 166 (270)
T ss_pred CCCCEEEEECCCCC
Confidence 24568899988443
No 408
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=93.99 E-value=0.083 Score=59.88 Aligned_cols=50 Identities=30% Similarity=0.290 Sum_probs=35.3
Q ss_pred CccccchhHHHHHHHHHhcC----CC------CCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLND----NL------RADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~----~~------~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|.+..++.+...+... .. ...-....+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999886655221 00 0011235688999999999999999986
No 409
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.98 E-value=0.14 Score=60.85 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=37.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
....++|....+.++.+.+..... ...-|.|+|..|+||+.+|+.++.
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH
Confidence 445799999988888887754321 223588999999999999999865
No 410
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.98 E-value=0.4 Score=47.43 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|.|+.|+|||||++.+..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35999999999999999999886
No 411
>PRK04040 adenylate kinase; Provisional
Probab=93.96 E-value=0.043 Score=55.01 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++|+|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 412
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.95 E-value=0.31 Score=54.60 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=46.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTV-----DDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 189 (1206)
...++.|.|.+|+|||||+.+++.. ....-..++|++... +..++.. -+++++.... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EE--s~~qi~~-Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE--SPEQIKL-RADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCc--CHHHHHH-HHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999998863 222223566665433 3333322 2333432111 1233444444332
Q ss_pred HHhCCCceEEEEeCCC
Q 045303 190 ERLSGKKFLLVLDDVW 205 (1206)
Q Consensus 190 ~~l~~~~~LlvlDdv~ 205 (1206)
..+.-++|+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2356688888873
No 413
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.94 E-value=0.28 Score=52.11 Aligned_cols=87 Identities=14% Similarity=0.088 Sum_probs=47.6
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCC-------CCCCHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTV-------DDNNLNSLQV 186 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~ 186 (1206)
.+..++.|.|.+|+|||||+..+... ...... ++.+ .....+..+ .+.++..+.... --.+...+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~--l~~~~~-~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~ 175 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR--LKDSVP-CAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIAD 175 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--hccCCC-EEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHH
Confidence 36789999999999999999998873 333332 2222 222222222 222333322111 1123344555
Q ss_pred HHHHHhCCCceEEEEeCCCc
Q 045303 187 KLKERLSGKKFLLVLDDVWN 206 (1206)
Q Consensus 187 ~l~~~l~~~~~LlvlDdv~~ 206 (1206)
.+........-++|++++-.
T Consensus 176 Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 176 AAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHHhhcCCcEEEEECCCC
Confidence 55554444556888999853
No 414
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.94 E-value=0.25 Score=52.17 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..|+|++|+|||+||..++.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHH
Confidence 667899999999999988875
No 415
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.91 E-value=0.26 Score=50.72 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+++|.|..|.|||||++.+...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 459999999999999999998763
No 416
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.90 E-value=0.33 Score=58.72 Aligned_cols=87 Identities=18% Similarity=0.153 Sum_probs=51.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC--hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD--VPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
.++++++|+.|+||||++..++...........+..++.. .+. ..+-++...+.++.......+.+++.+.+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 5799999999999999998888632211111234444432 222 3344555556665443334456666555543 34
Q ss_pred CCceEEEEeCCC
Q 045303 194 GKKFLLVLDDVW 205 (1206)
Q Consensus 194 ~~~~LlvlDdv~ 205 (1206)
++ -+|++|-.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 477888774
No 417
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.89 E-value=0.078 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++++|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999998873
No 418
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.88 E-value=0.054 Score=50.68 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++++|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 58999999999999999988776
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.87 E-value=0.2 Score=54.85 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+..+++++|++|+||||++..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~ 137 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK 137 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999999999998873
No 420
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=93.86 E-value=0.13 Score=56.15 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045303 119 ISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+++.|++|+||||+++.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999864
No 421
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.84 E-value=0.042 Score=52.03 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=18.5
Q ss_pred EEEEEccCCCcHHHHHHHHh
Q 045303 118 VISINGMGGVGKTTLAQLVY 137 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~ 137 (1206)
.++|+|.||+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998887
No 422
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.83 E-value=0.14 Score=52.24 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..+++|+|++|+||||+|+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999986
No 423
>PRK04328 hypothetical protein; Provisional
Probab=93.82 E-value=0.25 Score=52.35 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=30.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSD 156 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 156 (1206)
+...++.|.|.+|+|||+||.++... ....-..++|++...
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~--~~~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWN--GLQMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHH--HHhcCCcEEEEEeeC
Confidence 35679999999999999999988763 122234567777655
No 424
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.22 Score=54.14 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=50.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTV-----DDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 189 (1206)
.-.++.|-|-||||||||.-+++.+ ....- .+.+|+- ..+..++- --+++++.... ...+.+++...+.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsG--EES~~Qik-lRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSG--EESLQQIK-LRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeC--CcCHHHHH-HHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4469999999999999999999873 33333 5566544 33333332 22334442221 2344455444443
Q ss_pred HHhCCCceEEEEeCCCc
Q 045303 190 ERLSGKKFLLVLDDVWN 206 (1206)
Q Consensus 190 ~~l~~~~~LlvlDdv~~ 206 (1206)
+ .++-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 3 6888999999843
No 425
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.77 E-value=0.11 Score=51.76 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=32.2
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.+..+..+.-+... .+-+.+.|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 5688999888888776642 35789999999999999998864
No 426
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.72 E-value=0.28 Score=55.42 Aligned_cols=88 Identities=19% Similarity=0.203 Sum_probs=46.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcC-CCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSD-DFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
+..+++++|+.|+||||+++.++...........+.++.... .....+-+....+.++.......+..+....+.. ++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-LR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-hc
Confidence 457999999999999999988775211111122333333222 1223333444555554433333444444333332 34
Q ss_pred CCceEEEEeCC
Q 045303 194 GKKFLLVLDDV 204 (1206)
Q Consensus 194 ~~~~LlvlDdv 204 (1206)
++ -++++|-+
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 45677766
No 427
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.72 E-value=0.11 Score=51.79 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 428
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.71 E-value=0.29 Score=47.71 Aligned_cols=118 Identities=19% Similarity=0.149 Sum_probs=57.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
.+++|.|..|.|||||++.+.... ......+++......... .......+.....-... +...-.+...+..++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~qlS~G-~~~r~~l~~~l~~~~ 99 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKLP--LEELRRRIGYVPQLSGG-QRQRVALARALLLNP 99 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccCC--HHHHHhceEEEeeCCHH-HHHHHHHHHHHhcCC
Confidence 599999999999999999998632 123333433221111100 01111111110000111 222223455555667
Q ss_pred eEEEEeCCCcc-CHhhHHhhhccCCCC-CCCcEEEEEccchHHHhh
Q 045303 197 FLLVLDDVWNE-NYIRWSELRCPFVAG-AAGSKIVVTTRNLVVAER 240 (1206)
Q Consensus 197 ~LlvlDdv~~~-~~~~~~~l~~~l~~~-~~~~~iliTtr~~~~~~~ 240 (1206)
-++++|+.... +......+...+... ..+..++++|.+......
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 79999988432 112222222222211 124568888877655443
No 429
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.71 E-value=0.21 Score=54.64 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 99 EKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 99 ~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.++.+.+... .++..+|+|.|.+|+|||||+..+...
T Consensus 43 ~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 43 QELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555332 246789999999999999999987763
No 430
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.69 E-value=0.26 Score=49.31 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|.|..|+|||||++.++.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35999999999999999999985
No 431
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.60 E-value=0.31 Score=55.15 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=47.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccC-----CCCCCCCHH------H
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIAN-----VTVDDNNLN------S 183 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~------~ 183 (1206)
+-..++|.|..|+|||||++.++... .....+++..-.+..++.++....+..... ....+.... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34589999999999999999887632 122234443322344555544444333211 111111111 1
Q ss_pred HHHHHHHHh--CCCceEEEEeCC
Q 045303 184 LQVKLKERL--SGKKFLLVLDDV 204 (1206)
Q Consensus 184 ~~~~l~~~l--~~~~~LlvlDdv 204 (1206)
..-.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111223333 478999999999
No 432
>PRK03839 putative kinase; Provisional
Probab=93.57 E-value=0.051 Score=54.57 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=20.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999873
No 433
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=93.54 E-value=0.15 Score=51.93 Aligned_cols=83 Identities=23% Similarity=0.319 Sum_probs=49.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-CChHHHHHHHHHhccCCC------CCCCCHH------
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-FDVPRVTKSILESIANVT------VDDNNLN------ 182 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~------~~~~~~~------ 182 (1206)
-.-+.|.|.+|+|||+|+.++.+... -+.++++.+++. .+..++.+++...-.... ..++...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 35788999999999999999987432 233467777654 345555555543311110 1111111
Q ss_pred ----HHHHHHHHHhCCCceEEEEeCC
Q 045303 183 ----SLQVKLKERLSGKKFLLVLDDV 204 (1206)
Q Consensus 183 ----~~~~~l~~~l~~~~~LlvlDdv 204 (1206)
..++.++. .++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 11222333 689999999999
No 434
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.54 E-value=0.06 Score=54.63 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+.++++|.|++|+||||+|+.++.
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999999985
No 435
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.50 E-value=0.074 Score=55.75 Aligned_cols=86 Identities=23% Similarity=0.233 Sum_probs=49.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccc-cceeEEEEEcCCCChHHHHHHHHHhccCC---------------CCC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-FQIKGWTCVSDDFDVPRVTKSILESIANV---------------TVD 177 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---------------~~~ 177 (1206)
+...++.|.|.+|+|||++|.+++.. .... =..++|++.... ..++.+.+- .++.. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~--~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYN--GLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHH--hhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 35579999999999999999988753 2222 245667765443 344444432 22210 000
Q ss_pred -----CCCHHHHHHHHHHHhCC-CceEEEEeCC
Q 045303 178 -----DNNLNSLQVKLKERLSG-KKFLLVLDDV 204 (1206)
Q Consensus 178 -----~~~~~~~~~~l~~~l~~-~~~LlvlDdv 204 (1206)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34556666666665543 3467888876
No 436
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.48 E-value=0.26 Score=58.77 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=19.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+++.|.|.+|.||||++..+..
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~ 182 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLL 182 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999988765
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.46 E-value=0.3 Score=50.97 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=31.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
...++.|.|.+|+||||+|.+++... .+.. ..+++++ ...+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEe--CCCCHHHHHHHH
Confidence 34599999999999999987766532 1121 3445555 333455655555
No 438
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.46 E-value=0.39 Score=49.07 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+++|.|..|.|||||++.++..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999998864
No 439
>PRK00625 shikimate kinase; Provisional
Probab=93.44 E-value=0.054 Score=53.34 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|.++|++|+||||+++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 440
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.39 E-value=0.1 Score=56.48 Aligned_cols=48 Identities=21% Similarity=0.224 Sum_probs=32.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
.+++.+.|.|||||||+|.+.+- ........+.-++.....+..+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhc
Confidence 47999999999999999988655 2223334466666655555555443
No 441
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.39 E-value=0.14 Score=61.37 Aligned_cols=75 Identities=16% Similarity=0.050 Sum_probs=55.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-.+++|+++.++.|...+... +.+.++|++|+||||+|+.++... ....++..+|... ...+..++++.+
T Consensus 30 ~~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v 99 (637)
T PRK13765 30 IDQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTV 99 (637)
T ss_pred HHHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHH
Confidence 456899999999888877532 368899999999999999998742 2234567778665 334667777777
Q ss_pred HHhcc
Q 045303 168 LESIA 172 (1206)
Q Consensus 168 ~~~l~ 172 (1206)
...++
T Consensus 100 ~~~~G 104 (637)
T PRK13765 100 PAGKG 104 (637)
T ss_pred HHhcC
Confidence 76654
No 442
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.38 E-value=0.18 Score=59.33 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=38.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.+++|....++++.+.+..... ...-|.|.|..|+||+.+|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 4589999999998888864322 3357899999999999999999863
No 443
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.37 E-value=0.086 Score=53.03 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=28.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEE
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCV 154 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~ 154 (1206)
.++++|+|+.|+|||||++.+.. .....|...++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeecc
Confidence 36899999999999999999987 44556755555443
No 444
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.36 E-value=0.35 Score=50.80 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=28.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSD 156 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 156 (1206)
+..++.|.|.+|+|||++|.+++... ...-..++|++...
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~--~~~g~~~~~is~e~ 58 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG--LRDGDPVIYVTTEE 58 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 55799999999999999998876521 12234567776643
No 445
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.36 E-value=0.65 Score=54.32 Aligned_cols=184 Identities=17% Similarity=0.122 Sum_probs=93.2
Q ss_pred CCCCccccchhHHHHHHHH---HhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 86 VTEPKVYGREKEKEKIIEL---LLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 86 ~~~~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
....+..|.++..+++.+. |.++.. -+..=++-|.++|++|.|||.||++++-...+ .| ...|..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS-- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGS-- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccch--
Confidence 3456788988766655554 443321 01234677899999999999999999974332 22 122221
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC----------HhhHHhhhcc----CCCCC--
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN----------YIRWSELRCP----FVAGA-- 223 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~~~~~l~~~----l~~~~-- 223 (1206)
+..+.+-+ .......+...+..+.-++++++|.++... ...++.-..+ .-...
T Consensus 218 ------~FVemfVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 ------DFVEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ------hhhhhhcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 11111111 111222333444455668999999875321 1223222222 11122
Q ss_pred CCcEEEEEccchHHHh-----hcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchH
Q 045303 224 AGSKIVVTTRNLVVAE-----RMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLA 294 (1206)
Q Consensus 224 ~~~~iliTtr~~~~~~-----~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 294 (1206)
.|..|+..|-.+++.. ..+-++.+.++..+-..-.++++-++....- ...-. ...|++.+-|.--|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vd----l~~iAr~tpGfsGA 357 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVD----LKKIARGTPGFSGA 357 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCC----HHHHhhhCCCcccc
Confidence 3444444444444431 1223456667766666667777755422211 11111 22377777776544
No 446
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.34 E-value=0.11 Score=49.65 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 95 EKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 95 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.+.+++|.+++. .+++++.|..|+|||||+..+...
T Consensus 23 ~~g~~~l~~~l~---------~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK---------GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT---------TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc---------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 345677878773 269999999999999999999874
No 447
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.32 E-value=0.064 Score=54.27 Aligned_cols=28 Identities=32% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCcEEEEEEccCCCcHHHHHHHHhcCc
Q 045303 113 DDGFSVISINGMGGVGKTTLAQLVYNDD 140 (1206)
Q Consensus 113 ~~~~~vv~i~G~~GiGKTtLa~~~~~~~ 140 (1206)
..++.++.++||+|+||||+.++++.+.
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 3467788999999999999999998753
No 448
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.30 E-value=0.26 Score=60.68 Aligned_cols=48 Identities=21% Similarity=0.210 Sum_probs=37.9
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.+.++|....+.++.+....... ...-|.|+|.+|+||+++|+.+++.
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHh
Confidence 45689999999888888765432 2235789999999999999999863
No 449
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.30 E-value=0.16 Score=56.53 Aligned_cols=64 Identities=23% Similarity=0.179 Sum_probs=46.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
..++|+++....+...+... +-+.+.|.+|+|||++|+.++.. .. ....++.+.......++..
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G 87 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLG 87 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcC
Confidence 34889998888887777654 36789999999999999999973 32 2334556666655555543
No 450
>PRK15453 phosphoribulokinase; Provisional
Probab=93.30 E-value=0.32 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.486 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+|+|.|.+|+||||+|+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999998875
No 451
>PF13245 AAA_19: Part of AAA domain
Probab=93.30 E-value=0.074 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=17.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+++.|.|++|.|||+++.....
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~ 32 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIA 32 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999966654443
No 452
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.29 E-value=0.043 Score=30.10 Aligned_cols=15 Identities=47% Similarity=0.718 Sum_probs=5.4
Q ss_pred ccceeeccccccccc
Q 045303 525 HLRCLNLSRTRIQIL 539 (1206)
Q Consensus 525 ~L~~L~Ls~n~i~~l 539 (1206)
+|+.|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 453
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.29 E-value=0.11 Score=52.85 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++++|+|+.|.|||||++.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988864
No 454
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.27 E-value=0.093 Score=58.39 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=46.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccc-eeEEEEEcCCCChHHHHHHHHH--hccCCCCCCCCHHHHHHHHHHHhC
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKGWTCVSDDFDVPRVTKSILE--SIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
..|.|+|+.|+||||+++.+... .....+ ...-+.+..+... ....+.. ....+.....+.......++..++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~--i~~~~~~~~~Ivt~EdpiE~--~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRE--LAEAPDSHRKILTYEAPIEF--VYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH--HhhcCCCCcEEEEeCCCceE--eccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 59999999999999999988752 211111 1111222222111 0001100 000000011122345566777888
Q ss_pred CCceEEEEeCCCccC
Q 045303 194 GKKFLLVLDDVWNEN 208 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~ 208 (1206)
..+-.+++..+.+.+
T Consensus 211 ~~Pd~i~vGEiRd~e 225 (358)
T TIGR02524 211 RKPHAILVGEARDAE 225 (358)
T ss_pred cCCCEEeeeeeCCHH
Confidence 889999999886543
No 455
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.26 E-value=0.091 Score=56.38 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=38.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
+..+++.|+|.+|+|||++|.++.. +.......++|++.... ..++.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 4668999999999999999999987 44555778899887664 334444433
No 456
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.24 E-value=0.87 Score=43.09 Aligned_cols=83 Identities=18% Similarity=0.190 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHhccCCCC------CCCCHHHHHHHHHHHhCCCceEEEEeCC----CccCHhhHHhhhccCCCCCCCcEE
Q 045303 159 DVPRVTKSILESIANVTV------DDNNLNSLQVKLKERLSGKKFLLVLDDV----WNENYIRWSELRCPFVAGAAGSKI 228 (1206)
Q Consensus 159 ~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~l~~~l~~~~~LlvlDdv----~~~~~~~~~~l~~~l~~~~~~~~i 228 (1206)
+.....+..+++++.... +-.--++..-++.+.+..++-+++-|.- +..+-....++...+. ...|..+
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~ln-re~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALN-RERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHh-hhcCceE
Confidence 445556677777654331 1122345555678888888989998854 4433333334433332 3468888
Q ss_pred EEEccchHHHhhcC
Q 045303 229 VVTTRNLVVAERMR 242 (1206)
Q Consensus 229 liTtr~~~~~~~~~ 242 (1206)
++.|.++.++..+.
T Consensus 201 VlVTHD~~LA~Rc~ 214 (228)
T COG4181 201 VLVTHDPQLAARCD 214 (228)
T ss_pred EEEeCCHHHHHhhh
Confidence 88888988887664
No 457
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.19 E-value=0.43 Score=54.88 Aligned_cols=89 Identities=15% Similarity=0.111 Sum_probs=45.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-CChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-FDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
+.+|++++|+.|+||||++..++.....+.....+..+..... ....+-++...+.++.......+..+....+ ..++
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 3479999999999999999998863221211123444443321 1223334444454443322222222222222 2334
Q ss_pred CCceEEEEeCCC
Q 045303 194 GKKFLLVLDDVW 205 (1206)
Q Consensus 194 ~~~~LlvlDdv~ 205 (1206)
++ ..+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 43 477778764
No 458
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.15 E-value=0.068 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+++.+.|++|+||||+|+++...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999863
No 459
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.11 E-value=0.39 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-.+++|.|..|.|||||++.++.-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 460
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.10 E-value=0.15 Score=56.06 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=44.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGK 195 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 195 (1206)
...+.|+|..|+||||+++.+... ..... .++.+.......... .................-...+.+...++..
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~--~~~~~-~iv~ied~~El~~~~--~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~ 218 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDE--IPKDE-RIITIEDTREIFLPH--PNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR 218 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc--CCccc-cEEEEcCccccCCCC--CCEEEEEecCCCCCcCccCHHHHHHHHhcCC
Confidence 358999999999999999988863 21111 222221111111110 0000000000001111123445566677888
Q ss_pred ceEEEEeCCCcc
Q 045303 196 KFLLVLDDVWNE 207 (1206)
Q Consensus 196 ~~LlvlDdv~~~ 207 (1206)
+-.+++|.+...
T Consensus 219 pd~ii~gE~r~~ 230 (308)
T TIGR02788 219 PDRIILGELRGD 230 (308)
T ss_pred CCeEEEeccCCH
Confidence 889999999763
No 461
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.10 E-value=0.12 Score=65.19 Aligned_cols=139 Identities=19% Similarity=0.128 Sum_probs=73.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCc--ccccccceeEEEEEcCC----CChHH-HHHHHH-HhccCCCCCCCCHHHHHHH
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDD--RVQRHFQIKGWTCVSDD----FDVPR-VTKSIL-ESIANVTVDDNNLNSLQVK 187 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~--~~~~~f~~~~wv~~~~~----~~~~~-~~~~i~-~~l~~~~~~~~~~~~~~~~ 187 (1206)
..-+.|+|.+|+||||+...++-.. +....=+..+++..... ....+ .+.+.+ ..+... ....+....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~----~~~~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQ----GIAKQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhcc----CCcchhhHH
Confidence 3478899999999999998887521 11111122333333211 01111 122222 222111 112222333
Q ss_pred HHHHhCCCceEEEEeCCCccCHhhHHhh---hccCCCCCCCcEEEEEccchHHHhhcCCCCceeCCCCChhhHH
Q 045303 188 LKERLSGKKFLLVLDDVWNENYIRWSEL---RCPFVAGAAGSKIVVTTRNLVVAERMRADPVYQLKKLSDDDCL 258 (1206)
Q Consensus 188 l~~~l~~~~~LlvlDdv~~~~~~~~~~l---~~~l~~~~~~~~iliTtr~~~~~~~~~~~~~~~l~~l~~~e~~ 258 (1206)
..++++..++++++|.++......-... ...+.+.-+.+++|+|+|....-........+++..+.++...
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~ 371 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQIN 371 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHH
Confidence 3678889999999999876442211111 1223334468899999987654443334455666666665544
No 462
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.08 E-value=0.059 Score=53.57 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999873
No 463
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.05 E-value=0.071 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 464
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.03 E-value=0.25 Score=58.08 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 98 KEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 98 ~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
+..+-+.|... -.+-.++.|.|++|+|||||+.+++.. ....-..++++... .+..++...+
T Consensus 249 i~~lD~~lgGG----~~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~e--Es~~~i~~~~ 310 (484)
T TIGR02655 249 VVRLDEMCGGG----FFKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYE--ESRAQLLRNA 310 (484)
T ss_pred hHhHHHHhcCC----ccCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEee--CCHHHHHHHH
Confidence 34455555332 245679999999999999999999873 22222345555443 3455555554
No 465
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.02 E-value=0.39 Score=58.45 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-..|+|+|..|+|||||++.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998864
No 466
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.99 E-value=0.25 Score=51.24 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=63.9
Q ss_pred CccccchhHHHHHHHHHhcCCCC-CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLR-ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~-~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
..++|..-..+.++..+..-... ...++-+++++|.+|+||.-.++.++++....+- ........
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl--------------~S~~V~~f 147 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGL--------------RSPFVHHF 147 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccc--------------cchhHHHh
Confidence 45778877777777777653221 2356789999999999999999888874211110 01111111
Q ss_pred HHhccCCCCCCCCHHH----HHHHHHHHh-CCCceEEEEeCCCccCHhhHHhhh
Q 045303 168 LESIANVTVDDNNLNS----LQVKLKERL-SGKKFLLVLDDVWNENYIRWSELR 216 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~----~~~~l~~~l-~~~~~LlvlDdv~~~~~~~~~~l~ 216 (1206)
.....- +.....+. +..+++..+ ..+|-|+|+|+++.....-.+.+.
T Consensus 148 vat~hF--P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lk 199 (344)
T KOG2170|consen 148 VATLHF--PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLK 199 (344)
T ss_pred hhhccC--CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHh
Confidence 111111 12222222 333333333 357899999999876654444444
No 467
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.97 E-value=0.23 Score=59.66 Aligned_cols=74 Identities=16% Similarity=0.053 Sum_probs=49.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc-ccceeEEEEEcCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-HFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
..+++|+++.++.+...+... +.+.++|++|+|||++|+.++.. ... .|...+++... ..+..++++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~-~~~~~~~~~~ 85 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNP-EDPNMPRIVE 85 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCC-CCCchHHHHH
Confidence 356899999998888877532 25669999999999999999873 322 33333333222 2345566777
Q ss_pred HHHhcc
Q 045303 167 ILESIA 172 (1206)
Q Consensus 167 i~~~l~ 172 (1206)
+...++
T Consensus 86 v~~~~g 91 (608)
T TIGR00764 86 VPAGEG 91 (608)
T ss_pred HHHhhc
Confidence 776664
No 468
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=92.97 E-value=0.061 Score=54.26 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|.|.|++|+||||+|+.++.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 469
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.12 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++.+.|||++|.|||-+|+.|+..
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~ 189 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAAT 189 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHh
Confidence 45789999999999999999999973
No 470
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.92 E-value=0.086 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 469999999999999999999873
No 471
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.85 E-value=0.078 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
++++|.|++|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998763
No 472
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=92.83 E-value=0.29 Score=57.53 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=38.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.+++|....++++.+.+..... ...-|.|+|..|+||+.+|+.+++.
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~----s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR----SSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4589999999998888764321 3357899999999999999999874
No 473
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=92.80 E-value=0.38 Score=51.15 Aligned_cols=48 Identities=27% Similarity=0.347 Sum_probs=36.2
Q ss_pred CCccccchhHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEK---IIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...+||..+..+. +.++..+.. -.-+.|.|+|++|.|||+||-.+.+.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa~e 88 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIARE 88 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999877664 555554432 24578999999999999999888874
No 474
>PLN02348 phosphoribulokinase
Probab=92.79 E-value=0.55 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++.+|+|.|.+|+||||+|+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999987
No 475
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.78 E-value=0.43 Score=53.77 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=49.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHhccCCC------CCCCCHHH----
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILESIANVT------VDDNNLNS---- 183 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~---- 183 (1206)
+...++|.|..|+|||||++.++... ..+.++.+-++... .+.++...++..-+... ..+.....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34578999999999999999998631 12344555555443 34555555543321110 11111111
Q ss_pred --HHHHHHHHh--CCCceEEEEeCC
Q 045303 184 --LQVKLKERL--SGKKFLLVLDDV 204 (1206)
Q Consensus 184 --~~~~l~~~l--~~~~~LlvlDdv 204 (1206)
.+-.+.+++ +++.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 111233333 578999999999
No 476
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.78 E-value=0.0069 Score=59.44 Aligned_cols=87 Identities=22% Similarity=0.240 Sum_probs=77.3
Q ss_pred cccCC-ccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCccc
Q 045303 513 IFSLP-NEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGF 591 (1206)
Q Consensus 513 ~~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~ 591 (1206)
+..+| ..+...+.-+.||++.|++..+-..|..++.|..||++.| .+..+|..++.+..++++++..|+ ....|..+
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44555 5577788999999999999988888999999999999999 899999999999999999998888 88999999
Q ss_pred CCcCccccCC
Q 045303 592 GKLTCLLTLG 601 (1206)
Q Consensus 592 ~~l~~L~~L~ 601 (1206)
+++..++.++
T Consensus 108 ~k~~~~k~~e 117 (326)
T KOG0473|consen 108 KKEPHPKKNE 117 (326)
T ss_pred cccCCcchhh
Confidence 9999888874
No 477
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=1.1 Score=48.45 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 113 DDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 113 ~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
....+-|..+|+||.|||..|++++.+
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~ 407 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARH 407 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhh
Confidence 446788999999999999999999974
No 478
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.75 E-value=0.33 Score=50.00 Aligned_cols=97 Identities=23% Similarity=0.266 Sum_probs=57.1
Q ss_pred CccccchhHHHHHHHHHhcCC------CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHH
Q 045303 89 PKVYGREKEKEKIIELLLNDN------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 162 (1206)
.++.|-|...+.|.++..-+- .......+-+.++|++|.||+-||++|+... ..-| .+++.. +
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--nSTF-----FSvSSS----D 201 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--NSTF-----FSVSSS----D 201 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc--CCce-----EEeehH----H
Confidence 457788888888877643211 0112346789999999999999999998732 1222 233322 2
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHh-CCCceEEEEeCCCc
Q 045303 163 VTKSILESIANVTVDDNNLNSLQVKLKERL-SGKKFLLVLDDVWN 206 (1206)
Q Consensus 163 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~ 206 (1206)
+....+. ..+.+...+.+.. ..++-+|++|.++.
T Consensus 202 LvSKWmG----------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 LVSKWMG----------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred HHHHHhc----------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 2222111 1123333343333 46889999999953
No 479
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.73 E-value=0.37 Score=50.61 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=53.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCccc--ccccceeEEEEEcCCC-ChHHHHHHHHHhccCCC------CCCCCHH---
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRV--QRHFQIKGWTCVSDDF-DVPRVTKSILESIANVT------VDDNNLN--- 182 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~--- 182 (1206)
+-.-++|.|.+|+|||+|+..+.++... +++-+.++++.+++.. +..++..++.+.-.... ..++..-
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457799999999999999988874321 1223567777776654 45666666654321110 0111111
Q ss_pred ---HHHHHHHHHh---CCCceEEEEeCCC
Q 045303 183 ---SLQVKLKERL---SGKKFLLVLDDVW 205 (1206)
Q Consensus 183 ---~~~~~l~~~l---~~~~~LlvlDdv~ 205 (1206)
...-.+.+++ .++++|+++||+-
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~lt 176 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMT 176 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChh
Confidence 1112234444 3689999999993
No 480
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.72 E-value=0.1 Score=52.20 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+.++++|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4689999999999999999999873
No 481
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.69 E-value=0.54 Score=49.91 Aligned_cols=53 Identities=15% Similarity=0.081 Sum_probs=35.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILES 170 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 170 (1206)
...++.|.|.+|+|||++|.+++.+.... +=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHHHH
Confidence 44699999999999999999887642222 123456665544 455666666543
No 482
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.59 E-value=0.074 Score=54.39 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|+|.|++|+||||+|+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 483
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.57 E-value=0.7 Score=53.50 Aligned_cols=39 Identities=26% Similarity=0.096 Sum_probs=28.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVS 155 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 155 (1206)
...++.|.|.+|+|||||+.+++... ...-..++|++..
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~E 117 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGE 117 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcc
Confidence 45699999999999999999998732 2222346676654
No 484
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.55 E-value=0.13 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 4579999999999999999999863
No 485
>PF13479 AAA_24: AAA domain
Probab=92.54 E-value=0.44 Score=49.13 Aligned_cols=20 Identities=50% Similarity=0.499 Sum_probs=17.8
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 045303 117 SVISINGMGGVGKTTLAQLV 136 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~ 136 (1206)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 46889999999999999766
No 486
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.53 E-value=0.013 Score=70.30 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCCcceeeeccccCcCc--ccccccCCCccceeecccc-CCccccc----CCCCCCCCccEEEeccccC-ccccccccC-
Q 045303 968 NTSLEEITILNLENLKS--LPAGLHNLHHLQKIWIGYC-PNLESFP----EEGLPSTKLTELTIWDCEN-LKALPNCMH- 1038 (1206)
Q Consensus 968 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n-~~~~~~~----~~~~~l~~L~~L~L~~n~~-~~~~p~~~~- 1038 (1206)
.+.|+.+.+..|..... +-.....++.|+.|++++| ......+ .....+++|+.|+++.+.. ....-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 37788888888776665 3345567888888888873 2222111 2334467888888888773 222222222
Q ss_pred CCCccCeeeeecCCCCccCC--C-CCCCCCcCeEEEeCcCCC
Q 045303 1039 NLTSLLDLDIRGCPSVVSFP--E-DGFPTNLQSLEVRGLKIS 1077 (1206)
Q Consensus 1039 ~l~~L~~L~L~~n~~~~~~~--~-~~~~~~L~~L~Ls~n~l~ 1077 (1206)
.+++|+.|.+.+|...+... . ...+++|++|++++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 37788888877776321111 1 145677888888877653
No 487
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.53 E-value=0.55 Score=47.24 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...++.|.|.+|+||||+|+.+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 488
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.50 E-value=0.11 Score=50.78 Aligned_cols=21 Identities=52% Similarity=0.661 Sum_probs=18.2
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045303 119 ISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+.|+|.+|+||||+++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 489
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=0.82 Score=44.26 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=19.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+.|.|+.|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4889999999999999999875
No 490
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.44 E-value=0.38 Score=47.33 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.5
Q ss_pred EEEEccCCCcHHHHHHHHhcC
Q 045303 119 ISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~~ 139 (1206)
++|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999999873
No 491
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.44 E-value=0.16 Score=50.76 Aligned_cols=21 Identities=57% Similarity=0.890 Sum_probs=18.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|+|-||+||||+|..++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 589999999999999988554
No 492
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.37 E-value=0.13 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...++++|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3678999999999999999999875
No 493
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.34 E-value=0.81 Score=49.87 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=47.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEc-CCCChHHHHHHHHHhccCCC------CCCCCHH------
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVS-DDFDVPRVTKSILESIANVT------VDDNNLN------ 182 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~------~~~~~~~------ 182 (1206)
...++|.|..|+|||||++.+..... -+..+...++ +..+..++.......-.... ..+....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999998886322 1223333333 33455555555554322110 1111111
Q ss_pred HHHHHHHHHh--CCCceEEEEeCC
Q 045303 183 SLQVKLKERL--SGKKFLLVLDDV 204 (1206)
Q Consensus 183 ~~~~~l~~~l--~~~~~LlvlDdv 204 (1206)
...-.+.+++ +++.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1111223333 578999999998
No 494
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.33 E-value=0.54 Score=53.21 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=48.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHhccCCC------CCCCCHH-----
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILESIANVT------VDDNNLN----- 182 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~------~~~~~~~----- 182 (1206)
+...++|.|..|+|||||++.++.... .+.++++.++... ...++..+.+..-+... ..+....
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 345889999999999999999986322 1334445554443 44455544443321110 1111111
Q ss_pred -HHHHHHHHHh--CCCceEEEEeCC
Q 045303 183 -SLQVKLKERL--SGKKFLLVLDDV 204 (1206)
Q Consensus 183 -~~~~~l~~~l--~~~~~LlvlDdv 204 (1206)
..+-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1111233333 578999999999
No 495
>PRK06217 hypothetical protein; Validated
Probab=92.33 E-value=0.092 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.|+|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 496
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=92.31 E-value=0.43 Score=56.59 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=37.0
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.++..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 468999988888887775432 13346889999999999999998874
No 497
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.30 E-value=0.2 Score=48.50 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=21.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+++|.|++|+||||+++.+..+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999974
No 498
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.27 E-value=0.18 Score=54.53 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=32.5
Q ss_pred ccccchhHHHHHHHHHhcCCCC-----------CCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 90 KVYGREKEKEKIIELLLNDNLR-----------ADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~-----------~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+..|-..+...|.+.+...... ....--+++|+|.+|+||||+.+.+...
T Consensus 372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 3455566677776665332110 0112348999999999999999988753
No 499
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=92.26 E-value=0.44 Score=48.55 Aligned_cols=23 Identities=43% Similarity=0.570 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..|+|.|..|+||||+|+.+++.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~ 26 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKL 26 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999874
No 500
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.26 E-value=0.42 Score=58.04 Aligned_cols=85 Identities=19% Similarity=0.125 Sum_probs=54.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHH
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKL 188 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l 188 (1206)
+.-+++-|+|.+|+|||+||.+++.. ....-..++|++....++. ..+++++... ......++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 35689999999999999999877652 2222345788877766663 2455554322 1233445555555
Q ss_pred HHHhC-CCceEEEEeCCC
Q 045303 189 KERLS-GKKFLLVLDDVW 205 (1206)
Q Consensus 189 ~~~l~-~~~~LlvlDdv~ 205 (1206)
...+. ++.-+||+|.+.
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456789999884
Done!