Query 045303
Match_columns 1206
No_of_seqs 709 out of 5142
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:01:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.7E-49 3.3E-53 491.0 31.3 624 492-1193 69-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-44 7.7E-49 451.4 33.5 622 444-1152 50-744 (768)
3 2a5y_B CED-4; apoptosis; HET: 100.0 7.2E-43 2.5E-47 416.7 25.4 316 92-428 131-473 (549)
4 1ziw_A TOLL-like receptor 3; i 100.0 6.5E-39 2.2E-43 399.6 36.6 555 500-1172 25-623 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.3E-36 4.5E-41 378.9 41.3 543 503-1169 7-595 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 1E-36 3.4E-41 374.6 31.8 494 500-1108 32-538 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-35 4.2E-40 364.9 36.6 514 504-1171 16-560 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-35 6.3E-40 363.4 31.1 510 503-1171 14-558 (606)
9 3t6q_A CD180 antigen; protein- 100.0 6.2E-35 2.1E-39 358.7 33.4 501 500-1148 33-560 (606)
10 1vt4_I APAF-1 related killer D 100.0 2.6E-35 9E-40 349.4 21.3 285 90-419 129-436 (1221)
11 3j0a_A TOLL-like receptor 5; m 100.0 6E-33 2.1E-37 351.6 39.6 495 499-1099 23-557 (844)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-32 4.5E-37 348.5 40.0 516 503-1123 7-559 (844)
13 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-33 7.8E-38 376.7 28.7 312 83-426 118-452 (1249)
14 1z6t_A APAF-1, apoptotic prote 100.0 1.4E-32 4.8E-37 334.9 27.3 307 84-424 119-450 (591)
15 2z63_A TOLL-like receptor 4, v 100.0 4.2E-32 1.4E-36 331.4 30.3 480 500-1098 28-527 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.4E-32 1.5E-36 329.1 27.9 190 947-1170 311-509 (549)
17 4ecn_A Leucine-rich repeat pro 100.0 6.8E-32 2.3E-36 333.1 27.8 207 500-739 323-608 (876)
18 2z81_A CD282 antigen, TOLL-lik 100.0 9.5E-32 3.3E-36 326.2 28.2 449 500-1098 26-506 (549)
19 4eco_A Uncharacterized protein 100.0 4.9E-32 1.7E-36 331.1 25.0 149 559-739 194-366 (636)
20 2z63_A TOLL-like receptor 4, v 100.0 2.8E-31 9.7E-36 324.1 27.9 94 503-600 10-105 (570)
21 2z7x_B TOLL-like receptor 1, v 100.0 4.8E-31 1.7E-35 317.2 27.6 456 503-1146 3-479 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-30 9.2E-35 320.7 31.5 509 500-1098 52-576 (635)
23 4g8a_A TOLL-like receptor 4; l 100.0 9.5E-30 3.2E-34 315.8 27.5 503 505-1107 36-558 (635)
24 4ecn_A Leucine-rich repeat pro 100.0 1.4E-30 4.9E-35 321.4 19.2 396 534-1098 435-860 (876)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.9E-29 1.7E-33 301.9 30.6 265 499-817 30-311 (562)
26 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-29 9.7E-34 301.8 26.9 443 527-1170 3-480 (520)
27 1jl5_A Outer protein YOPM; leu 100.0 7.2E-29 2.4E-33 288.7 29.2 217 498-819 9-226 (454)
28 4eco_A Uncharacterized protein 100.0 1.1E-30 3.7E-35 319.2 14.4 37 500-536 81-117 (636)
29 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-27 4.4E-32 289.4 28.2 452 523-1146 30-508 (562)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3E-27 1E-31 275.3 23.1 96 496-601 38-133 (457)
31 3v47_A TOLL-like receptor 5B a 99.9 1.2E-26 4.1E-31 274.0 27.0 384 504-1098 14-404 (455)
32 1jl5_A Outer protein YOPM; leu 99.9 1.1E-26 3.9E-31 270.2 25.5 417 523-1171 10-429 (454)
33 1o6v_A Internalin A; bacterial 99.9 3.2E-26 1.1E-30 270.0 29.0 95 499-600 45-139 (466)
34 1o6v_A Internalin A; bacterial 99.9 1.5E-25 5.1E-30 264.2 27.8 76 521-601 43-118 (466)
35 3v47_A TOLL-like receptor 5B a 99.9 5.9E-26 2E-30 268.1 23.6 364 500-1081 30-412 (455)
36 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-25 6.4E-30 260.2 24.5 62 517-582 35-96 (457)
37 4fmz_A Internalin; leucine ric 99.9 5.5E-24 1.9E-28 241.0 21.1 81 497-582 41-121 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 5E-23 1.7E-27 244.2 25.5 94 503-600 14-109 (477)
39 2id5_A Lingo-1, leucine rich r 99.9 7.7E-23 2.6E-27 242.6 24.9 110 969-1078 224-334 (477)
40 3o6n_A APL1; leucine-rich repe 99.9 8.9E-23 3E-27 234.8 24.4 105 969-1077 248-352 (390)
41 3oja_B Anopheles plasmodium-re 99.9 1.5E-22 5.1E-27 246.0 24.8 105 969-1077 254-358 (597)
42 3o6n_A APL1; leucine-rich repe 99.9 1.2E-22 4.2E-27 233.6 17.2 303 467-841 43-351 (390)
43 4fmz_A Internalin; leucine ric 99.9 7.5E-22 2.6E-26 223.5 21.4 298 784-1170 42-345 (347)
44 2ft3_A Biglycan; proteoglycan, 99.9 2.7E-21 9.2E-26 216.8 22.6 125 973-1098 197-329 (332)
45 3oja_B Anopheles plasmodium-re 99.9 4.1E-22 1.4E-26 242.2 17.0 303 467-841 49-357 (597)
46 1xku_A Decorin; proteoglycan, 99.9 8.4E-21 2.9E-25 212.7 23.8 113 985-1098 208-328 (330)
47 1xku_A Decorin; proteoglycan, 99.8 2.3E-20 8E-25 209.1 20.8 242 501-800 32-276 (330)
48 4fcg_A Uncharacterized protein 99.8 1.4E-20 4.8E-25 209.3 16.9 186 498-739 79-266 (328)
49 2ft3_A Biglycan; proteoglycan, 99.8 3E-20 1E-24 208.3 19.0 241 501-800 34-277 (332)
50 3ogk_B Coronatine-insensitive 99.8 1.6E-21 5.4E-26 238.8 6.9 210 493-737 66-304 (592)
51 1ogq_A PGIP-2, polygalacturona 99.8 8.9E-21 3E-25 209.8 9.0 224 945-1172 75-305 (313)
52 3g06_A SSPH2 (leucine-rich rep 99.8 7.2E-19 2.5E-23 210.2 24.3 73 500-582 40-112 (622)
53 1ogq_A PGIP-2, polygalacturona 99.8 5.5E-20 1.9E-24 203.4 13.4 158 969-1152 149-308 (313)
54 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-21 7.3E-26 229.6 -3.5 91 985-1077 333-440 (461)
55 4fcg_A Uncharacterized protein 99.8 6.8E-19 2.3E-23 195.7 15.8 215 946-1167 81-310 (328)
56 1z7x_W Ribonuclease inhibitor; 99.8 1.7E-22 6E-27 238.9 -14.7 137 986-1125 277-441 (461)
57 3ogk_B Coronatine-insensitive 99.8 7.5E-21 2.6E-25 232.8 -3.7 78 504-582 54-149 (592)
58 3zyi_A Leucine-rich repeat-con 99.8 6.8E-18 2.3E-22 197.8 20.7 222 943-1170 72-302 (452)
59 3zyj_A Leucine-rich repeat-con 99.8 8.9E-18 3E-22 196.1 20.9 222 943-1170 61-291 (440)
60 2z66_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 185.5 18.9 54 682-739 10-65 (306)
61 3g06_A SSPH2 (leucine-rich rep 99.7 4.1E-17 1.4E-21 195.0 21.5 237 500-844 61-299 (622)
62 2z80_A TOLL-like receptor 2, v 99.7 1.3E-17 4.5E-22 188.6 16.3 266 498-874 29-313 (353)
63 1ozn_A Reticulon 4 receptor; N 99.7 2.1E-17 7.1E-22 180.7 17.3 203 944-1170 30-237 (285)
64 3zyj_A Leucine-rich repeat-con 99.7 3E-17 1E-21 191.6 19.5 235 958-1201 54-293 (440)
65 3zyi_A Leucine-rich repeat-con 99.7 3.9E-17 1.3E-21 191.4 19.9 235 959-1202 66-305 (452)
66 2p1m_B Transport inhibitor res 99.7 8E-19 2.7E-23 215.0 4.0 89 494-582 60-167 (594)
67 2xwt_C Thyrotropin receptor; s 99.7 3.7E-17 1.3E-21 173.3 15.8 197 969-1171 31-239 (239)
68 1ozn_A Reticulon 4 receptor; N 99.7 2E-17 6.7E-22 180.9 13.9 184 920-1107 30-217 (285)
69 2z80_A TOLL-like receptor 2, v 99.7 1.4E-17 4.8E-22 188.3 12.7 244 922-1170 52-313 (353)
70 2z66_A Variable lymphocyte rec 99.7 3.3E-17 1.1E-21 181.4 14.2 221 945-1170 27-260 (306)
71 1wwl_A Monocyte differentiatio 99.7 1.9E-18 6.4E-23 191.3 3.3 195 968-1170 94-308 (312)
72 3o53_A Protein LRIM1, AGAP0063 99.7 7.2E-18 2.5E-22 187.1 7.1 259 489-807 23-283 (317)
73 2z62_A TOLL-like receptor 4, v 99.7 2.3E-16 7.9E-21 171.4 15.8 196 970-1170 29-236 (276)
74 2z62_A TOLL-like receptor 4, v 99.7 2.3E-16 7.8E-21 171.5 15.4 204 942-1148 24-237 (276)
75 2o6q_A Variable lymphocyte rec 99.7 9.4E-16 3.2E-20 165.7 20.1 197 947-1169 17-216 (270)
76 4glp_A Monocyte differentiatio 99.7 6.7E-17 2.3E-21 178.8 10.8 195 968-1170 90-306 (310)
77 3o53_A Protein LRIM1, AGAP0063 99.7 4.3E-17 1.5E-21 180.8 9.2 192 947-1150 81-277 (317)
78 1wwl_A Monocyte differentiatio 99.7 3.7E-17 1.3E-21 180.8 8.1 85 498-582 93-184 (312)
79 2qen_A Walker-type ATPase; unk 99.7 1.5E-15 5.1E-20 172.0 21.6 294 86-420 9-349 (350)
80 2o6q_A Variable lymphocyte rec 99.7 1.3E-15 4.3E-20 164.7 19.7 197 924-1146 18-216 (270)
81 2xwt_C Thyrotropin receptor; s 99.7 4.7E-16 1.6E-20 164.8 15.4 208 932-1147 20-238 (239)
82 3oja_A Leucine-rich immune mol 99.7 1.8E-16 6.3E-21 186.2 12.7 146 993-1143 120-270 (487)
83 3oja_A Leucine-rich immune mol 99.7 2.8E-16 9.7E-21 184.6 13.0 212 946-1171 34-250 (487)
84 3rfs_A Internalin B, repeat mo 99.7 9.9E-16 3.4E-20 165.6 16.2 197 947-1153 42-240 (272)
85 1p9a_G Platelet glycoprotein I 99.6 1E-15 3.5E-20 166.6 16.0 199 496-737 6-206 (290)
86 1h6u_A Internalin H; cell adhe 99.6 4.5E-16 1.5E-20 171.4 13.3 96 498-600 39-134 (308)
87 3rfs_A Internalin B, repeat mo 99.6 6.3E-16 2.2E-20 167.1 14.3 82 497-582 38-120 (272)
88 1p9a_G Platelet glycoprotein I 99.6 2.2E-15 7.5E-20 163.9 18.4 195 947-1170 11-207 (290)
89 1w5s_A Origin recognition comp 99.6 2.6E-15 8.8E-20 174.2 18.1 316 87-415 20-387 (412)
90 2p1m_B Transport inhibitor res 99.6 7.4E-18 2.5E-22 206.4 -6.7 129 969-1098 372-515 (594)
91 2fna_A Conserved hypothetical 99.6 2E-14 6.8E-19 163.3 20.7 292 87-419 11-356 (357)
92 4glp_A Monocyte differentiatio 99.6 1.7E-15 5.9E-20 167.4 10.8 195 947-1146 92-305 (310)
93 1h6u_A Internalin H; cell adhe 99.6 5E-15 1.7E-19 163.0 12.0 192 946-1153 41-234 (308)
94 4ay9_X Follicle-stimulating ho 99.6 4.3E-14 1.5E-18 158.9 17.8 218 945-1166 29-254 (350)
95 3m19_A Variable lymphocyte rec 99.6 4.9E-14 1.7E-18 150.2 17.2 136 969-1107 35-171 (251)
96 3m19_A Variable lymphocyte rec 99.5 6.2E-14 2.1E-18 149.5 16.9 155 943-1098 32-188 (251)
97 1h6t_A Internalin B; cell adhe 99.5 2.1E-14 7.1E-19 156.4 11.1 168 498-737 44-211 (291)
98 4ay9_X Follicle-stimulating ho 99.5 2.6E-13 9E-18 152.5 18.2 219 923-1145 31-256 (350)
99 2ast_B S-phase kinase-associat 99.5 2.7E-15 9.2E-20 168.7 1.5 228 500-806 70-312 (336)
100 1m9s_A Internalin B; cell inva 99.5 6E-14 2.1E-18 167.7 12.1 170 498-739 41-210 (605)
101 2ast_B S-phase kinase-associat 99.5 1.4E-15 4.8E-20 171.0 -3.8 195 968-1169 92-304 (336)
102 3cvr_A Invasion plasmid antige 99.5 5E-13 1.7E-17 157.5 16.6 138 947-1108 60-197 (571)
103 2ca6_A RAN GTPase-activating p 99.4 5.7E-15 1.9E-19 169.2 -0.5 89 494-583 26-134 (386)
104 2v9t_B SLIT homolog 2 protein 99.4 5E-13 1.7E-17 138.7 13.9 129 969-1098 32-161 (220)
105 2o6s_A Variable lymphocyte rec 99.4 4.5E-13 1.5E-17 138.2 12.7 155 969-1153 28-183 (208)
106 2v70_A SLIT-2, SLIT homolog 2 99.4 7.2E-13 2.5E-17 137.4 13.9 129 969-1098 32-162 (220)
107 4ezg_A Putative uncharacterize 99.4 4.6E-13 1.6E-17 136.6 11.9 147 946-1098 44-190 (197)
108 3cvr_A Invasion plasmid antige 99.4 6.4E-13 2.2E-17 156.7 14.7 179 923-1129 60-245 (571)
109 2o6s_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 134.6 15.3 156 984-1170 21-177 (208)
110 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.7E-17 137.2 13.5 128 969-1098 40-168 (229)
111 2v9t_B SLIT homolog 2 protein 99.4 1.6E-12 5.5E-17 134.8 14.1 130 973-1108 15-145 (220)
112 1xeu_A Internalin C; cellular 99.4 1.4E-13 4.8E-18 147.2 5.9 166 499-737 18-183 (263)
113 2qby_B CDC6 homolog 3, cell di 99.4 1.4E-11 4.8E-16 141.0 23.0 296 88-403 19-340 (384)
114 1h6t_A Internalin B; cell adhe 99.4 6.5E-13 2.2E-17 144.6 10.8 141 947-1098 47-187 (291)
115 1fnn_A CDC6P, cell division co 99.4 2.3E-11 8E-16 139.5 24.2 298 88-403 16-352 (389)
116 2ca6_A RAN GTPase-activating p 99.4 3.5E-14 1.2E-18 162.6 0.4 243 464-737 27-314 (386)
117 4ezg_A Putative uncharacterize 99.4 1.5E-12 5.1E-17 132.7 11.7 129 946-1077 66-194 (197)
118 3goz_A Leucine-rich repeat-con 99.4 6.5E-14 2.2E-18 158.4 1.8 90 492-582 14-120 (362)
119 2v1u_A Cell division control p 99.4 9.7E-12 3.3E-16 142.7 19.9 297 87-402 17-351 (387)
120 1m9s_A Internalin B; cell inva 99.4 2.6E-12 8.8E-17 153.6 13.7 119 969-1097 65-183 (605)
121 2xot_A Amphoterin-induced prot 99.3 1.9E-12 6.7E-17 146.0 10.9 155 943-1098 36-198 (361)
122 2xot_A Amphoterin-induced prot 99.3 3.2E-12 1.1E-16 144.2 12.4 154 950-1108 22-180 (361)
123 2ell_A Acidic leucine-rich nuc 99.3 1.5E-12 5E-17 129.1 8.0 136 969-1108 24-164 (168)
124 2v70_A SLIT-2, SLIT homolog 2 99.3 5.5E-12 1.9E-16 130.7 12.4 138 943-1080 29-169 (220)
125 3goz_A Leucine-rich repeat-con 99.3 3.6E-14 1.2E-18 160.6 -4.9 14 1132-1145 250-263 (362)
126 2qby_A CDC6 homolog 1, cell di 99.3 1.2E-11 4E-16 142.1 16.0 296 87-402 18-348 (386)
127 1xeu_A Internalin C; cellular 99.3 2.3E-12 8E-17 137.7 8.2 151 989-1152 37-188 (263)
128 3e6j_A Variable lymphocyte rec 99.3 1.6E-11 5.6E-16 128.2 14.1 137 943-1080 37-175 (229)
129 2je0_A Acidic leucine-rich nuc 99.3 1.5E-12 5.1E-17 126.0 4.1 127 969-1097 17-148 (149)
130 1dce_A Protein (RAB geranylger 99.3 1.2E-13 4.2E-18 164.1 -5.4 38 521-558 346-383 (567)
131 1w8a_A SLIT protein; signaling 99.2 2E-11 6.8E-16 123.5 11.3 104 994-1098 30-135 (192)
132 1w8a_A SLIT protein; signaling 99.2 2.7E-11 9.2E-16 122.5 11.8 131 949-1081 11-143 (192)
133 2ell_A Acidic leucine-rich nuc 99.2 1.2E-11 4E-16 122.5 8.4 141 991-1153 22-164 (168)
134 1njg_A DNA polymerase III subu 99.2 2.2E-10 7.7E-15 122.1 17.0 198 88-302 22-231 (250)
135 1dce_A Protein (RAB geranylger 99.2 6.5E-13 2.2E-17 157.8 -5.6 100 497-600 346-468 (567)
136 2wfh_A SLIT homolog 2 protein 99.1 1.4E-10 4.9E-15 117.0 11.9 104 993-1098 31-135 (193)
137 2wfh_A SLIT homolog 2 protein 99.1 1.9E-10 6.4E-15 116.2 11.9 126 949-1077 13-139 (193)
138 3sb4_A Hypothetical leucine ri 99.1 1.5E-10 5.1E-15 128.8 11.7 125 969-1096 202-328 (329)
139 2o6r_A Variable lymphocyte rec 99.1 2.5E-10 8.6E-15 113.9 12.2 105 993-1098 28-133 (177)
140 2je0_A Acidic leucine-rich nuc 99.1 2.5E-11 8.6E-16 117.3 3.7 113 991-1107 15-129 (149)
141 2o6r_A Variable lymphocyte rec 99.1 5.2E-10 1.8E-14 111.6 13.2 132 948-1081 9-141 (177)
142 3sb4_A Hypothetical leucine ri 99.1 1.6E-10 5.5E-15 128.5 9.8 234 922-1164 25-327 (329)
143 2chg_A Replication factor C sm 99.1 1.5E-09 5.3E-14 113.5 16.2 185 88-299 16-204 (226)
144 1a9n_A U2A', U2A'; complex (nu 99.1 6.4E-11 2.2E-15 118.0 4.7 126 968-1098 18-149 (176)
145 4b8c_D Glucose-repressible alc 99.1 1.4E-10 4.8E-15 142.6 8.3 112 491-605 215-326 (727)
146 1a9n_A U2A', U2A'; complex (nu 99.0 1.1E-10 3.6E-15 116.5 5.2 104 499-606 41-151 (176)
147 4b8c_D Glucose-repressible alc 99.0 4.4E-11 1.5E-15 147.0 2.4 134 946-1082 224-359 (727)
148 1hqc_A RUVB; extended AAA-ATPa 98.9 3.4E-09 1.2E-13 117.7 13.4 183 88-302 11-214 (324)
149 3g39_A Variable lymphocyte rec 98.9 3E-09 1E-13 104.8 10.8 85 993-1077 30-115 (170)
150 2r9u_A Variable lymphocyte rec 98.9 4.2E-09 1.4E-13 104.0 10.9 81 1017-1098 33-114 (174)
151 3g39_A Variable lymphocyte rec 98.9 5E-09 1.7E-13 103.2 10.8 102 994-1099 10-112 (170)
152 1ds9_A Outer arm dynein; leuci 98.9 1.3E-11 4.3E-16 125.9 -8.7 84 495-582 43-126 (198)
153 1sxj_B Activator 1 37 kDa subu 98.9 1.3E-08 4.4E-13 113.1 14.9 186 88-299 20-210 (323)
154 2r9u_A Variable lymphocyte rec 98.9 7E-09 2.4E-13 102.4 10.9 104 972-1078 15-119 (174)
155 3qfl_A MLA10; coiled-coil, (CC 98.8 5.2E-09 1.8E-13 93.2 6.0 48 1-48 34-83 (115)
156 1ds9_A Outer arm dynein; leuci 98.7 2.7E-10 9.2E-15 116.0 -4.6 126 464-601 43-180 (198)
157 3te6_A Regulatory protein SIR3 98.7 5.9E-08 2E-12 103.9 12.4 173 90-267 21-213 (318)
158 1iqp_A RFCS; clamp loader, ext 98.7 9.8E-08 3.4E-12 106.1 13.1 184 88-299 24-212 (327)
159 1jr3_A DNA polymerase III subu 98.7 2.3E-07 8E-12 105.2 16.0 196 88-299 15-221 (373)
160 2ifg_A High affinity nerve gro 98.7 4.5E-08 1.5E-12 109.8 9.9 103 974-1077 13-116 (347)
161 4fdw_A Leucine rich hypothetic 98.6 7.6E-07 2.6E-11 100.7 19.5 211 947-1169 158-381 (401)
162 4fdw_A Leucine rich hypothetic 98.6 1.3E-06 4.4E-11 98.8 20.3 191 969-1169 157-356 (401)
163 2chq_A Replication factor C sm 98.6 3.2E-07 1.1E-11 101.5 13.9 182 88-298 16-203 (319)
164 4fs7_A Uncharacterized protein 98.6 2.5E-06 8.6E-11 97.1 21.4 104 987-1098 270-375 (394)
165 3pfi_A Holliday junction ATP-d 98.5 1.8E-06 6E-11 96.2 18.3 259 88-405 28-316 (338)
166 4fs7_A Uncharacterized protein 98.5 4E-06 1.4E-10 95.4 21.1 57 987-1046 337-393 (394)
167 2ifg_A High affinity nerve gro 98.5 2.8E-07 9.4E-12 103.3 9.3 104 951-1055 13-117 (347)
168 1jbk_A CLPB protein; beta barr 98.4 4.1E-07 1.4E-11 92.2 8.2 46 88-139 21-66 (195)
169 3bos_A Putative DNA replicatio 98.4 5.5E-07 1.9E-11 95.0 8.7 175 88-299 27-217 (242)
170 1sxj_D Activator 1 41 kDa subu 98.4 1.7E-06 5.7E-11 97.3 12.9 196 87-297 35-233 (353)
171 3pvs_A Replication-associated 98.3 9.6E-06 3.3E-10 92.4 17.3 181 87-298 24-214 (447)
172 3uk6_A RUVB-like 2; hexameric 98.3 9.6E-06 3.3E-10 91.5 16.1 195 88-297 43-301 (368)
173 3h4m_A Proteasome-activating n 98.2 5.1E-06 1.8E-10 89.8 12.6 187 87-298 15-230 (285)
174 1sxj_A Activator 1 95 kDa subu 98.2 4.9E-06 1.7E-10 97.7 12.9 196 88-299 38-253 (516)
175 3un9_A NLR family member X1; l 98.2 2.6E-08 8.7E-13 111.7 -6.4 152 946-1098 72-248 (372)
176 2z4s_A Chromosomal replication 98.2 5.6E-06 1.9E-10 94.7 12.2 161 116-297 130-304 (440)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.2 9.2E-06 3.2E-10 86.6 13.1 188 88-298 5-221 (262)
178 1sxj_E Activator 1 40 kDa subu 98.2 5.5E-06 1.9E-10 92.9 11.8 196 88-298 13-236 (354)
179 1a5t_A Delta prime, HOLB; zinc 98.2 2.6E-05 8.8E-10 86.0 16.5 182 95-298 8-204 (334)
180 3n70_A Transport activator; si 98.1 5.2E-06 1.8E-10 78.8 8.1 114 90-234 2-115 (145)
181 3un9_A NLR family member X1; l 98.1 2.2E-07 7.6E-12 104.0 -1.8 82 500-582 72-166 (372)
182 3u61_B DNA polymerase accessor 98.1 2.1E-05 7.2E-10 86.7 13.6 178 87-294 24-211 (324)
183 3syl_A Protein CBBX; photosynt 98.1 2.2E-05 7.4E-10 86.1 13.4 161 90-266 32-218 (309)
184 1xwi_A SKD1 protein; VPS4B, AA 98.1 0.00014 4.9E-09 79.2 19.8 190 88-300 11-224 (322)
185 1d2n_A N-ethylmaleimide-sensit 98.0 3E-05 1E-09 82.9 13.4 172 89-291 33-229 (272)
186 2qp9_X Vacuolar protein sortin 98.0 0.0001 3.4E-09 81.8 17.7 187 87-299 49-261 (355)
187 3eie_A Vacuolar protein sortin 98.0 0.0001 3.5E-09 80.8 17.4 188 88-300 17-229 (322)
188 1l8q_A Chromosomal replication 98.0 4.7E-05 1.6E-09 83.8 14.2 179 88-294 10-203 (324)
189 2p65_A Hypothetical protein PF 98.0 7E-06 2.4E-10 82.3 6.2 46 88-139 21-66 (187)
190 4gt6_A Cell surface protein; l 97.9 0.00026 9E-09 80.3 19.7 107 986-1098 258-366 (394)
191 3d8b_A Fidgetin-like protein 1 97.9 0.0001 3.5E-09 81.9 14.5 188 88-300 83-296 (357)
192 1sxj_C Activator 1 40 kDa subu 97.9 8.4E-05 2.9E-09 82.3 13.5 175 89-295 25-208 (340)
193 4gt6_A Cell surface protein; l 97.9 0.001 3.6E-08 75.3 22.8 102 988-1097 283-386 (394)
194 2ra8_A Uncharacterized protein 97.8 1.8E-06 6E-11 95.6 -0.8 163 985-1169 164-341 (362)
195 3pxg_A Negative regulator of g 97.8 5.3E-05 1.8E-09 87.4 11.1 146 88-265 179-338 (468)
196 3b9p_A CG5977-PA, isoform A; A 97.8 0.00028 9.5E-09 76.6 16.0 185 88-299 20-233 (297)
197 2ra8_A Uncharacterized protein 97.8 7.2E-06 2.4E-10 90.8 3.2 11 884-894 138-148 (362)
198 1in4_A RUVB, holliday junction 97.8 0.00089 3E-08 73.6 20.1 177 88-297 24-221 (334)
199 2zan_A Vacuolar protein sortin 97.8 0.00038 1.3E-08 79.6 17.3 190 87-299 132-345 (444)
200 3cf0_A Transitional endoplasmi 97.8 0.00026 9E-09 76.6 15.2 182 88-294 14-223 (301)
201 3vfd_A Spastin; ATPase, microt 97.7 0.0002 6.9E-09 80.8 14.0 189 87-299 113-326 (389)
202 4h09_A Hypothetical leucine ri 97.7 0.0023 7.7E-08 72.2 22.7 106 987-1097 211-318 (379)
203 2gno_A DNA polymerase III, gam 97.7 0.00015 5.2E-09 77.9 11.9 149 93-265 1-152 (305)
204 1qvr_A CLPB protein; coiled co 97.7 4.5E-05 1.5E-09 95.6 8.8 157 88-265 169-345 (854)
205 3co5_A Putative two-component 97.7 2.2E-05 7.4E-10 74.2 4.6 47 89-139 4-50 (143)
206 4fcw_A Chaperone protein CLPB; 97.7 0.00018 6.3E-09 78.7 11.9 122 89-217 17-141 (311)
207 3ec2_A DNA replication protein 97.7 8.9E-05 3.1E-09 73.4 8.4 121 94-234 19-142 (180)
208 3e4g_A ATP synthase subunit S, 97.7 2.2E-05 7.6E-10 75.3 3.6 86 1017-1104 61-153 (176)
209 3hu3_A Transitional endoplasmi 97.6 0.00025 8.7E-09 81.5 13.0 185 89-298 204-414 (489)
210 4b4t_J 26S protease regulatory 97.6 0.00083 2.8E-08 73.6 16.2 179 89-292 148-354 (405)
211 3rw6_A Nuclear RNA export fact 97.6 3.6E-05 1.2E-09 80.2 5.3 83 493-577 163-257 (267)
212 4h09_A Hypothetical leucine ri 97.6 0.005 1.7E-07 69.3 23.7 124 969-1097 217-341 (379)
213 3rw6_A Nuclear RNA export fact 97.6 8.9E-06 3E-10 84.8 -0.2 81 521-603 167-259 (267)
214 2w58_A DNAI, primosome compone 97.5 5.8E-05 2E-09 76.5 5.2 126 89-234 25-158 (202)
215 4b4t_L 26S protease subunit RP 97.5 0.0012 4.2E-08 73.6 16.2 181 87-292 179-387 (437)
216 2bjv_A PSP operon transcriptio 97.5 0.00015 5E-09 77.2 8.2 47 89-139 6-52 (265)
217 1ojl_A Transcriptional regulat 97.5 0.00015 5.1E-09 78.3 8.2 46 89-138 2-47 (304)
218 1io0_A Tropomodulin; LRR prote 97.5 2.9E-05 9.8E-10 77.2 2.3 90 492-582 28-134 (185)
219 3e4g_A ATP synthase subunit S, 97.5 2.8E-05 9.4E-10 74.7 2.0 65 989-1053 81-151 (176)
220 1ofh_A ATP-dependent HSL prote 97.5 0.00048 1.6E-08 75.3 12.2 50 89-138 15-72 (310)
221 3pxi_A Negative regulator of g 97.5 0.00024 8.2E-09 88.0 10.7 150 88-265 179-338 (758)
222 1lv7_A FTSH; alpha/beta domain 97.5 0.0012 4.2E-08 69.5 14.8 185 87-296 10-222 (257)
223 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00084 2.9E-08 83.3 15.4 158 88-265 185-362 (758)
224 4b4t_K 26S protease regulatory 97.4 0.0013 4.3E-08 73.5 14.6 180 88-292 171-379 (428)
225 2r62_A Cell division protease 97.4 9.3E-05 3.2E-09 79.0 5.3 159 87-265 9-196 (268)
226 2c9o_A RUVB-like 1; hexameric 97.4 0.00065 2.2E-08 78.2 12.7 95 197-295 297-406 (456)
227 1io0_A Tropomodulin; LRR prote 97.4 0.00014 4.8E-09 72.1 5.7 115 465-582 32-162 (185)
228 4b4t_H 26S protease regulatory 97.4 0.00068 2.3E-08 75.3 11.5 180 88-292 208-415 (467)
229 3pxi_A Negative regulator of g 97.3 0.00032 1.1E-08 86.9 9.0 156 89-265 491-675 (758)
230 2ce7_A Cell division protein F 97.2 0.0019 6.7E-08 73.4 13.5 180 88-292 15-221 (476)
231 4b4t_M 26S protease regulatory 97.2 0.00055 1.9E-08 76.4 8.4 180 87-291 179-386 (434)
232 2kjq_A DNAA-related protein; s 97.1 0.00019 6.6E-09 67.9 3.2 24 116-139 36-59 (149)
233 3t15_A Ribulose bisphosphate c 97.0 0.0031 1.1E-07 67.6 12.0 26 114-139 34-59 (293)
234 4b4t_I 26S protease regulatory 97.0 0.0015 5.3E-08 71.7 9.1 181 87-292 180-388 (437)
235 2r44_A Uncharacterized protein 96.9 0.0028 9.5E-08 69.8 10.7 152 89-266 27-199 (331)
236 3cf2_A TER ATPase, transitiona 96.9 0.0032 1.1E-07 76.0 11.6 180 88-292 203-407 (806)
237 3m6a_A ATP-dependent protease 96.8 0.0031 1E-07 74.0 10.6 162 89-265 81-266 (543)
238 1qvr_A CLPB protein; coiled co 96.8 0.0034 1.2E-07 78.6 11.3 50 89-138 558-610 (854)
239 1r6b_X CLPA protein; AAA+, N-t 96.8 0.0027 9.3E-08 78.7 10.0 50 89-138 458-510 (758)
240 2qgz_A Helicase loader, putati 96.7 0.001 3.6E-08 71.7 4.5 42 95-139 134-175 (308)
241 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0015 5.1E-08 68.9 5.1 70 115-206 122-193 (331)
242 1um8_A ATP-dependent CLP prote 96.6 0.013 4.3E-07 65.7 12.7 50 89-138 21-94 (376)
243 1ixz_A ATP-dependent metallopr 96.4 0.016 5.6E-07 60.7 11.5 53 87-139 14-72 (254)
244 2dhr_A FTSH; AAA+ protein, hex 96.3 0.019 6.6E-07 65.7 12.4 178 86-292 28-236 (499)
245 2cvh_A DNA repair and recombin 96.3 0.012 4.2E-07 60.0 9.9 85 115-205 19-115 (220)
246 1iy2_A ATP-dependent metallopr 96.3 0.041 1.4E-06 58.4 14.2 181 87-292 38-245 (278)
247 1ypw_A Transitional endoplasmi 96.0 0.016 5.3E-07 71.5 10.4 157 88-265 203-385 (806)
248 2b8t_A Thymidine kinase; deoxy 96.0 0.0055 1.9E-07 61.8 5.2 112 115-234 11-125 (223)
249 2x8a_A Nuclear valosin-contain 95.8 0.034 1.2E-06 58.6 10.4 155 89-265 10-191 (274)
250 3hr8_A Protein RECA; alpha and 95.8 0.019 6.6E-07 62.4 8.5 85 115-206 60-150 (356)
251 1g5t_A COB(I)alamin adenosyltr 95.7 0.0061 2.1E-07 59.3 3.8 116 117-235 29-163 (196)
252 3rfe_A Platelet glycoprotein I 95.6 0.011 3.9E-07 53.9 5.2 52 504-558 12-66 (130)
253 1jr3_D DNA polymerase III, del 95.6 0.079 2.7E-06 58.3 12.9 156 116-297 18-183 (343)
254 3io5_A Recombination and repai 95.6 0.03 1E-06 58.8 8.4 84 118-206 30-122 (333)
255 1rz3_A Hypothetical protein rb 95.2 0.019 6.6E-07 57.5 5.8 43 93-138 2-44 (201)
256 3dm5_A SRP54, signal recogniti 95.2 0.56 1.9E-05 52.3 17.9 24 115-138 99-122 (443)
257 2px0_A Flagellar biosynthesis 95.2 0.038 1.3E-06 58.8 8.3 87 115-204 104-191 (296)
258 2z43_A DNA repair and recombin 95.2 0.037 1.3E-06 60.1 8.2 56 115-171 106-165 (324)
259 1xp8_A RECA protein, recombina 95.1 0.052 1.8E-06 59.5 9.0 84 115-205 73-162 (366)
260 1v5w_A DMC1, meiotic recombina 95.0 0.061 2.1E-06 58.9 9.4 57 114-171 120-180 (343)
261 2zr9_A Protein RECA, recombina 95.0 0.054 1.8E-06 59.2 8.9 85 115-206 60-150 (349)
262 2w0m_A SSO2452; RECA, SSPF, un 94.9 0.05 1.7E-06 56.1 8.2 23 116-138 23-45 (235)
263 3kl4_A SRP54, signal recogniti 94.8 0.35 1.2E-05 54.0 14.9 25 115-139 96-120 (433)
264 1n0w_A DNA repair protein RAD5 94.8 0.046 1.6E-06 56.8 7.4 49 115-163 23-75 (243)
265 1u94_A RECA protein, recombina 94.7 0.035 1.2E-06 60.7 6.5 84 115-205 62-151 (356)
266 3cf2_A TER ATPase, transitiona 94.7 0.11 3.9E-06 62.6 11.4 159 87-265 475-661 (806)
267 3nbx_X ATPase RAVA; AAA+ ATPas 94.6 0.031 1.1E-06 64.1 5.9 43 89-139 22-64 (500)
268 3tqc_A Pantothenate kinase; bi 94.5 0.09 3.1E-06 56.2 8.8 46 91-138 69-114 (321)
269 2i1q_A DNA repair and recombin 94.5 0.047 1.6E-06 59.4 6.9 56 115-171 97-166 (322)
270 1gvn_B Zeta; postsegregational 94.2 0.042 1.4E-06 58.3 5.6 42 96-138 14-55 (287)
271 3rfe_A Platelet glycoprotein I 94.2 0.059 2E-06 49.1 5.7 56 997-1054 12-68 (130)
272 1j8m_F SRP54, signal recogniti 94.2 0.77 2.6E-05 48.6 15.2 89 116-206 98-191 (297)
273 1odf_A YGR205W, hypothetical 3 94.2 0.035 1.2E-06 58.8 4.7 25 114-138 29-53 (290)
274 1qhx_A CPT, protein (chloramph 94.0 0.024 8.3E-07 55.5 2.9 22 117-138 4-25 (178)
275 3c8u_A Fructokinase; YP_612366 93.9 0.036 1.2E-06 55.8 4.2 38 97-138 7-44 (208)
276 3ice_A Transcription terminati 93.9 0.051 1.8E-06 58.5 5.3 96 100-204 163-270 (422)
277 3hws_A ATP-dependent CLP prote 93.9 0.039 1.4E-06 61.3 4.7 50 90-139 16-74 (363)
278 1cr0_A DNA primase/helicase; R 93.9 0.12 4.2E-06 55.3 8.5 25 115-139 34-58 (296)
279 3bh0_A DNAB-like replicative h 93.9 0.23 7.8E-06 53.5 10.6 52 115-170 67-118 (315)
280 1ly1_A Polynucleotide kinase; 93.8 0.032 1.1E-06 54.8 3.3 22 117-138 3-24 (181)
281 1vma_A Cell division protein F 93.7 0.13 4.5E-06 54.7 8.1 108 95-205 81-196 (306)
282 3upu_A ATP-dependent DNA helic 93.7 0.15 5.2E-06 58.5 9.3 40 93-139 29-68 (459)
283 3kb2_A SPBC2 prophage-derived 93.6 0.029 1E-06 54.5 2.8 22 117-138 2-23 (173)
284 1zp6_A Hypothetical protein AT 93.6 0.041 1.4E-06 54.6 3.8 25 115-139 8-32 (191)
285 3lw7_A Adenylate kinase relate 93.5 0.033 1.1E-06 54.5 2.9 20 117-136 2-21 (179)
286 3vaa_A Shikimate kinase, SK; s 93.4 0.037 1.2E-06 55.3 3.1 23 116-138 25-47 (199)
287 2orw_A Thymidine kinase; TMTK, 93.4 0.019 6.5E-07 56.3 0.9 22 117-138 4-25 (184)
288 2p5t_B PEZT; postsegregational 93.3 0.06 2.1E-06 56.1 4.7 42 96-138 13-54 (253)
289 2rhm_A Putative kinase; P-loop 93.2 0.047 1.6E-06 54.3 3.5 24 115-138 4-27 (193)
290 3lda_A DNA repair protein RAD5 93.2 0.19 6.6E-06 55.7 8.7 57 115-172 177-237 (400)
291 3uie_A Adenylyl-sulfate kinase 93.2 0.054 1.9E-06 54.1 3.9 24 115-138 24-47 (200)
292 1sky_E F1-ATPase, F1-ATP synth 93.2 0.22 7.4E-06 55.7 9.0 51 117-168 152-203 (473)
293 1kgd_A CASK, peripheral plasma 93.1 0.049 1.7E-06 53.3 3.4 23 116-138 5-27 (180)
294 3tlx_A Adenylate kinase 2; str 93.1 0.072 2.5E-06 55.0 4.8 41 94-138 11-51 (243)
295 2ga8_A Hypothetical 39.9 kDa p 93.1 0.096 3.3E-06 56.2 5.8 45 92-138 2-46 (359)
296 1ypw_A Transitional endoplasmi 93.0 0.018 6.2E-07 70.9 0.1 52 88-139 476-534 (806)
297 1ex7_A Guanylate kinase; subst 93.0 0.04 1.4E-06 53.7 2.5 22 117-138 2-23 (186)
298 1pzn_A RAD51, DNA repair and r 93.0 0.17 5.9E-06 55.3 7.9 45 115-159 130-178 (349)
299 3trf_A Shikimate kinase, SK; a 92.9 0.046 1.6E-06 53.9 2.9 23 116-138 5-27 (185)
300 4a1f_A DNAB helicase, replicat 92.9 0.21 7E-06 53.8 8.1 53 115-171 45-97 (338)
301 1nks_A Adenylate kinase; therm 92.9 0.051 1.8E-06 54.0 3.2 22 117-138 2-23 (194)
302 1kag_A SKI, shikimate kinase I 92.9 0.042 1.4E-06 53.4 2.5 22 117-138 5-26 (173)
303 2xxa_A Signal recognition part 92.8 0.26 9E-06 55.3 9.1 43 97-139 78-123 (433)
304 1pgv_A TMD-1, tropomodulin TMD 92.8 0.11 3.6E-06 50.9 5.2 92 491-582 32-137 (197)
305 1knq_A Gluconate kinase; ALFA/ 92.8 0.073 2.5E-06 51.8 4.1 24 115-138 7-30 (175)
306 3t61_A Gluconokinase; PSI-biol 92.7 0.046 1.6E-06 54.8 2.6 23 116-138 18-40 (202)
307 3umf_A Adenylate kinase; rossm 92.7 0.063 2.1E-06 53.8 3.5 25 114-138 27-51 (217)
308 4eun_A Thermoresistant glucoki 92.7 0.058 2E-06 53.9 3.3 24 115-138 28-51 (200)
309 1g8p_A Magnesium-chelatase 38 92.7 0.042 1.5E-06 60.8 2.5 46 88-139 23-68 (350)
310 3tau_A Guanylate kinase, GMP k 92.6 0.061 2.1E-06 54.1 3.4 25 115-139 7-31 (208)
311 2ffh_A Protein (FFH); SRP54, s 92.6 0.36 1.2E-05 53.8 9.8 25 115-139 97-121 (425)
312 1y63_A LMAJ004144AAA protein; 92.6 0.064 2.2E-06 52.7 3.5 24 115-138 9-32 (184)
313 1ukz_A Uridylate kinase; trans 92.6 0.07 2.4E-06 53.5 3.9 24 115-138 14-37 (203)
314 2qor_A Guanylate kinase; phosp 92.6 0.049 1.7E-06 54.7 2.6 24 115-138 11-34 (204)
315 3e1s_A Exodeoxyribonuclease V, 92.6 0.17 5.8E-06 59.5 7.5 105 117-234 205-315 (574)
316 3iij_A Coilin-interacting nucl 92.6 0.048 1.6E-06 53.4 2.5 23 116-138 11-33 (180)
317 1tev_A UMP-CMP kinase; ploop, 92.5 0.062 2.1E-06 53.5 3.3 23 116-138 3-25 (196)
318 1kht_A Adenylate kinase; phosp 92.5 0.055 1.9E-06 53.6 2.9 22 117-138 4-25 (192)
319 2ze6_A Isopentenyl transferase 92.4 0.062 2.1E-06 55.9 3.3 22 117-138 2-23 (253)
320 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.066 2.3E-06 56.0 3.5 23 116-138 4-26 (260)
321 1uf9_A TT1252 protein; P-loop, 92.4 0.071 2.4E-06 53.4 3.6 25 114-138 6-30 (203)
322 2dr3_A UPF0273 protein PH0284; 92.4 0.31 1.1E-05 50.4 8.7 39 115-155 22-60 (247)
323 2qt1_A Nicotinamide riboside k 92.4 0.079 2.7E-06 53.3 3.9 25 115-139 20-44 (207)
324 2cdn_A Adenylate kinase; phosp 92.3 0.072 2.4E-06 53.3 3.5 24 115-138 19-42 (201)
325 4gp7_A Metallophosphoesterase; 92.3 0.066 2.3E-06 51.8 3.1 24 115-138 8-31 (171)
326 1zu4_A FTSY; GTPase, signal re 92.3 0.29 9.8E-06 52.6 8.3 25 114-138 103-127 (320)
327 2c95_A Adenylate kinase 1; tra 92.3 0.066 2.3E-06 53.3 3.1 23 116-138 9-31 (196)
328 1ls1_A Signal recognition part 92.2 0.28 9.5E-06 52.1 8.0 87 115-204 97-189 (295)
329 3e70_C DPA, signal recognition 92.2 0.4 1.4E-05 51.6 9.3 25 114-138 127-151 (328)
330 1uj2_A Uridine-cytidine kinase 92.2 0.075 2.6E-06 55.4 3.5 25 114-138 20-44 (252)
331 2yvu_A Probable adenylyl-sulfa 92.2 0.09 3.1E-06 51.8 3.9 25 115-139 12-36 (186)
332 2plr_A DTMP kinase, probable t 92.1 0.077 2.6E-06 53.6 3.5 24 116-139 4-27 (213)
333 1zuh_A Shikimate kinase; alpha 92.1 0.067 2.3E-06 51.7 2.8 24 115-138 6-29 (168)
334 1tue_A Replication protein E1; 92.1 0.098 3.4E-06 51.0 3.9 37 98-139 45-81 (212)
335 3cm0_A Adenylate kinase; ATP-b 92.1 0.079 2.7E-06 52.2 3.4 23 116-138 4-26 (186)
336 3ney_A 55 kDa erythrocyte memb 92.1 0.078 2.7E-06 52.0 3.2 24 115-138 18-41 (197)
337 3tr0_A Guanylate kinase, GMP k 92.1 0.079 2.7E-06 53.2 3.4 22 117-138 8-29 (205)
338 1via_A Shikimate kinase; struc 92.1 0.057 1.9E-06 52.6 2.3 21 118-138 6-26 (175)
339 2bdt_A BH3686; alpha-beta prot 92.0 0.083 2.9E-06 52.2 3.5 22 117-138 3-24 (189)
340 3asz_A Uridine kinase; cytidin 92.0 0.087 3E-06 53.2 3.6 24 115-138 5-28 (211)
341 2j41_A Guanylate kinase; GMP, 91.9 0.083 2.8E-06 53.1 3.4 24 116-139 6-29 (207)
342 3jvv_A Twitching mobility prot 91.9 0.12 4E-06 56.5 4.7 110 117-237 124-233 (356)
343 3a00_A Guanylate kinase, GMP k 91.9 0.066 2.3E-06 52.7 2.5 22 117-138 2-23 (186)
344 1xjc_A MOBB protein homolog; s 91.8 0.08 2.7E-06 50.4 2.9 25 115-139 3-27 (169)
345 2iyv_A Shikimate kinase, SK; t 91.8 0.058 2E-06 53.0 2.0 21 118-138 4-24 (184)
346 3fwy_A Light-independent proto 91.8 0.15 5.2E-06 54.6 5.4 41 114-156 46-86 (314)
347 3vkw_A Replicase large subunit 91.8 0.73 2.5E-05 51.2 10.9 106 113-234 158-269 (446)
348 2bwj_A Adenylate kinase 5; pho 91.8 0.076 2.6E-06 53.0 2.9 22 117-138 13-34 (199)
349 2vli_A Antibiotic resistance p 91.7 0.054 1.8E-06 53.2 1.7 23 116-138 5-27 (183)
350 2jaq_A Deoxyguanosine kinase; 91.7 0.082 2.8E-06 53.0 3.0 21 118-138 2-22 (205)
351 1jjv_A Dephospho-COA kinase; P 91.7 0.097 3.3E-06 52.6 3.6 22 117-138 3-24 (206)
352 1ye8_A Protein THEP1, hypothet 91.7 0.087 3E-06 51.2 3.0 22 118-139 2-23 (178)
353 1qf9_A UMP/CMP kinase, protein 91.7 0.11 3.7E-06 51.6 3.9 23 116-138 6-28 (194)
354 1aky_A Adenylate kinase; ATP:A 91.6 0.083 2.8E-06 53.7 3.1 23 116-138 4-26 (220)
355 1g41_A Heat shock protein HSLU 91.6 0.13 4.6E-06 57.4 4.9 50 89-138 15-72 (444)
356 1e6c_A Shikimate kinase; phosp 91.6 0.068 2.3E-06 51.9 2.3 22 117-138 3-24 (173)
357 2j37_W Signal recognition part 91.5 0.71 2.4E-05 52.7 10.8 41 98-138 80-123 (504)
358 2pez_A Bifunctional 3'-phospho 91.5 0.1 3.6E-06 50.9 3.5 24 115-138 4-27 (179)
359 2wwf_A Thymidilate kinase, put 91.5 0.088 3E-06 53.2 3.0 24 115-138 9-32 (212)
360 2f6r_A COA synthase, bifunctio 91.5 0.11 3.8E-06 54.9 3.9 24 115-138 74-97 (281)
361 1nn5_A Similar to deoxythymidy 91.4 0.093 3.2E-06 53.1 3.2 23 116-138 9-31 (215)
362 2grj_A Dephospho-COA kinase; T 91.4 0.1 3.5E-06 51.3 3.3 24 115-138 11-34 (192)
363 2ck3_D ATP synthase subunit be 91.4 0.6 2.1E-05 52.0 9.7 65 100-170 142-207 (482)
364 2if2_A Dephospho-COA kinase; a 91.4 0.092 3.1E-06 52.6 3.0 21 118-138 3-23 (204)
365 1lvg_A Guanylate kinase, GMP k 91.3 0.079 2.7E-06 52.7 2.5 22 117-138 5-26 (198)
366 2pt5_A Shikimate kinase, SK; a 91.3 0.099 3.4E-06 50.4 3.0 21 118-138 2-22 (168)
367 1q57_A DNA primase/helicase; d 91.3 0.46 1.6E-05 55.2 9.3 54 115-171 241-294 (503)
368 2bbw_A Adenylate kinase 4, AK4 91.2 0.1 3.5E-06 54.2 3.3 23 116-138 27-49 (246)
369 3cmu_A Protein RECA, recombina 91.2 0.21 7.3E-06 66.1 6.8 84 115-205 1426-1515(2050)
370 1zd8_A GTP:AMP phosphotransfer 91.0 0.098 3.3E-06 53.5 2.9 23 116-138 7-29 (227)
371 1cke_A CK, MSSA, protein (cyti 91.0 0.11 3.7E-06 53.1 3.2 22 117-138 6-27 (227)
372 3aez_A Pantothenate kinase; tr 91.0 0.13 4.4E-06 55.1 3.8 25 114-138 88-112 (312)
373 2pbr_A DTMP kinase, thymidylat 90.9 0.11 3.7E-06 51.6 3.1 21 118-138 2-22 (195)
374 2v54_A DTMP kinase, thymidylat 90.9 0.11 3.7E-06 52.1 3.1 24 116-139 4-27 (204)
375 2jeo_A Uridine-cytidine kinase 90.9 0.14 4.7E-06 53.1 3.8 24 115-138 24-47 (245)
376 2hf9_A Probable hydrogenase ni 90.7 0.21 7.1E-06 50.9 5.1 39 95-139 23-61 (226)
377 3bgw_A DNAB-like replicative h 90.7 0.8 2.7E-05 51.8 10.2 52 115-170 196-247 (444)
378 1htw_A HI0065; nucleotide-bind 90.7 0.16 5.5E-06 48.0 3.7 24 115-138 32-55 (158)
379 1s96_A Guanylate kinase, GMP k 90.7 0.13 4.4E-06 51.9 3.3 24 115-138 15-38 (219)
380 1rj9_A FTSY, signal recognitio 90.7 0.14 4.7E-06 54.6 3.6 24 115-138 101-124 (304)
381 2yhs_A FTSY, cell division pro 90.6 0.49 1.7E-05 53.3 8.2 25 114-138 291-315 (503)
382 1m7g_A Adenylylsulfate kinase; 90.6 0.14 4.8E-06 51.6 3.5 24 115-138 24-47 (211)
383 1zak_A Adenylate kinase; ATP:A 90.6 0.1 3.6E-06 53.0 2.6 24 115-138 4-27 (222)
384 1fx0_B ATP synthase beta chain 90.6 0.48 1.7E-05 53.0 8.0 64 101-170 155-219 (498)
385 1z6g_A Guanylate kinase; struc 90.5 0.11 3.9E-06 52.5 2.7 23 116-138 23-45 (218)
386 1znw_A Guanylate kinase, GMP k 90.5 0.14 4.6E-06 51.5 3.3 23 116-138 20-42 (207)
387 2z0h_A DTMP kinase, thymidylat 90.5 0.13 4.3E-06 51.2 3.0 21 118-138 2-22 (197)
388 4akg_A Glutathione S-transfera 90.5 0.81 2.8E-05 63.0 11.6 138 117-265 1268-1431(2695)
389 1vht_A Dephospho-COA kinase; s 90.4 0.15 5.3E-06 51.6 3.6 23 116-138 4-26 (218)
390 4edh_A DTMP kinase, thymidylat 90.4 0.43 1.5E-05 47.8 6.8 24 116-139 6-29 (213)
391 3fb4_A Adenylate kinase; psych 90.4 0.13 4.5E-06 52.1 3.0 21 118-138 2-22 (216)
392 3be4_A Adenylate kinase; malar 90.3 0.11 3.8E-06 52.6 2.4 22 117-138 6-27 (217)
393 3dl0_A Adenylate kinase; phosp 90.1 0.14 4.8E-06 51.8 3.0 21 118-138 2-22 (216)
394 4e22_A Cytidylate kinase; P-lo 90.1 0.15 5.2E-06 52.9 3.4 23 116-138 27-49 (252)
395 1sq5_A Pantothenate kinase; P- 90.1 0.33 1.1E-05 52.1 6.1 25 114-138 78-102 (308)
396 1gtv_A TMK, thymidylate kinase 90.1 0.08 2.7E-06 53.6 1.2 21 118-138 2-22 (214)
397 3a8t_A Adenylate isopentenyltr 90.0 0.19 6.3E-06 53.7 3.9 24 115-138 39-62 (339)
398 2q6t_A DNAB replication FORK h 90.0 0.89 3.1E-05 51.7 10.0 53 115-170 199-251 (444)
399 2r6a_A DNAB helicase, replicat 90.0 0.61 2.1E-05 53.2 8.6 51 115-168 202-252 (454)
400 3k1j_A LON protease, ATP-depen 90.0 0.2 6.8E-06 59.7 4.7 43 89-139 41-83 (604)
401 2v3c_C SRP54, signal recogniti 89.9 0.4 1.4E-05 53.8 6.8 25 115-139 98-122 (432)
402 3exa_A TRNA delta(2)-isopenten 89.9 0.18 6E-06 53.1 3.5 23 116-138 3-25 (322)
403 3llm_A ATP-dependent RNA helic 89.8 0.79 2.7E-05 46.9 8.5 21 117-137 77-97 (235)
404 2ged_A SR-beta, signal recogni 89.8 0.23 8E-06 49.0 4.3 25 115-139 47-71 (193)
405 3p32_A Probable GTPase RV1496/ 89.8 0.31 1.1E-05 53.6 5.6 37 98-138 65-101 (355)
406 2wsm_A Hydrogenase expression/ 89.7 0.26 8.8E-06 50.0 4.7 41 93-139 13-53 (221)
407 3d3q_A TRNA delta(2)-isopenten 89.6 0.17 5.8E-06 54.2 3.3 22 117-138 8-29 (340)
408 2qmh_A HPR kinase/phosphorylas 89.5 0.18 6.3E-06 48.8 3.1 24 116-139 34-57 (205)
409 3hjn_A DTMP kinase, thymidylat 89.4 0.37 1.3E-05 47.6 5.4 22 118-139 2-23 (197)
410 3dzd_A Transcriptional regulat 89.4 0.68 2.3E-05 51.0 8.1 46 89-138 129-174 (368)
411 4eaq_A DTMP kinase, thymidylat 89.4 0.24 8.4E-06 50.3 4.1 25 115-139 25-49 (229)
412 3r20_A Cytidylate kinase; stru 89.4 0.18 6.3E-06 51.0 3.1 23 116-138 9-31 (233)
413 2zts_A Putative uncharacterize 89.3 0.64 2.2E-05 48.1 7.5 51 115-168 29-79 (251)
414 3foz_A TRNA delta(2)-isopenten 89.3 0.23 7.7E-06 52.2 3.8 24 115-138 9-32 (316)
415 3nwj_A ATSK2; P loop, shikimat 89.3 0.15 5.1E-06 52.5 2.5 22 117-138 49-70 (250)
416 3crm_A TRNA delta(2)-isopenten 89.2 0.19 6.6E-06 53.4 3.3 23 116-138 5-27 (323)
417 1ak2_A Adenylate kinase isoenz 89.2 0.19 6.5E-06 51.5 3.2 23 116-138 16-38 (233)
418 3sr0_A Adenylate kinase; phosp 89.1 0.19 6.6E-06 50.0 3.0 21 118-138 2-22 (206)
419 2f1r_A Molybdopterin-guanine d 89.1 0.13 4.3E-06 49.5 1.6 22 117-138 3-24 (171)
420 1np6_A Molybdopterin-guanine d 89.1 0.2 7E-06 48.1 3.1 23 116-138 6-28 (174)
421 3b9q_A Chloroplast SRP recepto 88.9 0.23 8E-06 52.8 3.7 24 115-138 99-122 (302)
422 2xb4_A Adenylate kinase; ATP-b 88.9 0.2 6.7E-06 51.0 3.0 21 118-138 2-22 (223)
423 4a74_A DNA repair and recombin 88.9 0.22 7.4E-06 51.0 3.4 24 115-138 24-47 (231)
424 1w36_D RECD, exodeoxyribonucle 88.9 1.3 4.4E-05 52.6 10.4 22 117-138 165-186 (608)
425 3ake_A Cytidylate kinase; CMP 88.9 0.2 6.8E-06 50.3 3.0 21 118-138 4-24 (208)
426 1a7j_A Phosphoribulokinase; tr 88.8 0.11 3.6E-06 55.2 1.0 24 115-138 4-27 (290)
427 3l0o_A Transcription terminati 88.8 1.2 4.1E-05 48.0 8.9 36 99-139 163-198 (427)
428 2i3b_A HCR-ntpase, human cance 88.8 0.19 6.4E-06 49.3 2.7 22 118-139 3-24 (189)
429 1e4v_A Adenylate kinase; trans 88.8 0.2 6.9E-06 50.5 3.0 21 118-138 2-22 (214)
430 3lnc_A Guanylate kinase, GMP k 88.7 0.15 5.2E-06 52.2 2.0 23 116-138 27-50 (231)
431 3end_A Light-independent proto 88.7 0.39 1.3E-05 51.6 5.4 43 114-158 39-81 (307)
432 1ltq_A Polynucleotide kinase; 88.6 0.22 7.5E-06 53.5 3.3 22 117-138 3-24 (301)
433 3zvl_A Bifunctional polynucleo 88.6 0.23 7.8E-06 55.9 3.6 25 114-138 256-280 (416)
434 2ehv_A Hypothetical protein PH 88.5 0.22 7.7E-06 51.7 3.2 24 115-138 29-52 (251)
435 1pgv_A TMD-1, tropomodulin TMD 88.4 0.26 8.8E-06 48.2 3.3 93 489-582 59-168 (197)
436 2onk_A Molybdate/tungstate ABC 88.3 0.24 8.1E-06 50.7 3.1 22 117-138 25-46 (240)
437 1u0j_A DNA replication protein 88.3 0.41 1.4E-05 49.2 4.8 36 99-138 91-126 (267)
438 3tif_A Uncharacterized ABC tra 88.1 0.26 8.8E-06 50.4 3.3 23 116-138 31-53 (235)
439 3cmu_A Protein RECA, recombina 87.9 0.75 2.6E-05 61.1 8.1 85 115-206 382-472 (2050)
440 2pcj_A ABC transporter, lipopr 87.9 0.26 8.8E-06 50.0 3.1 22 117-138 31-52 (224)
441 3cmw_A Protein RECA, recombina 87.9 0.69 2.4E-05 60.5 7.7 83 115-204 382-470 (1706)
442 2ocp_A DGK, deoxyguanosine kin 87.8 0.28 9.6E-06 50.5 3.4 24 116-139 2-25 (241)
443 2cbz_A Multidrug resistance-as 87.8 0.28 9.4E-06 50.2 3.3 24 116-139 31-54 (237)
444 1yrb_A ATP(GTP)binding protein 87.8 0.3 1E-05 51.1 3.7 24 115-138 13-36 (262)
445 2og2_A Putative signal recogni 87.6 0.32 1.1E-05 52.9 3.7 24 115-138 156-179 (359)
446 2wji_A Ferrous iron transport 87.5 0.35 1.2E-05 46.3 3.7 23 117-139 4-26 (165)
447 2r8r_A Sensor protein; KDPD, P 87.5 0.46 1.6E-05 47.3 4.5 23 117-139 7-29 (228)
448 2zej_A Dardarin, leucine-rich 87.4 0.28 9.5E-06 48.0 3.0 22 118-139 4-25 (184)
449 1ny5_A Transcriptional regulat 87.4 1.1 3.6E-05 49.9 8.0 46 89-138 137-182 (387)
450 2eyu_A Twitching motility prot 87.2 0.36 1.2E-05 50.2 3.8 111 115-236 24-134 (261)
451 1mv5_A LMRA, multidrug resista 87.2 0.35 1.2E-05 49.7 3.7 24 115-138 27-50 (243)
452 3ld9_A DTMP kinase, thymidylat 87.2 0.54 1.8E-05 47.2 4.9 25 115-139 20-44 (223)
453 1b0u_A Histidine permease; ABC 87.1 0.31 1.1E-05 50.7 3.3 23 116-138 32-54 (262)
454 2v9p_A Replication protein E1; 87.1 0.3 1E-05 51.7 3.2 24 115-138 125-148 (305)
455 1svm_A Large T antigen; AAA+ f 87.1 0.31 1.1E-05 53.5 3.4 24 115-138 168-191 (377)
456 3b85_A Phosphate starvation-in 87.1 0.24 8E-06 49.4 2.2 22 117-138 23-44 (208)
457 2olj_A Amino acid ABC transpor 87.0 0.32 1.1E-05 50.5 3.3 23 116-138 50-72 (263)
458 3gfo_A Cobalt import ATP-bindi 87.0 0.31 1.1E-05 51.0 3.1 22 117-138 35-56 (275)
459 1oix_A RAS-related protein RAB 87.0 0.33 1.1E-05 47.9 3.2 24 116-139 29-52 (191)
460 2vp4_A Deoxynucleoside kinase; 86.9 0.33 1.1E-05 49.6 3.3 25 114-138 18-42 (230)
461 3vr4_D V-type sodium ATPase su 86.9 0.64 2.2E-05 51.5 5.6 88 117-204 152-257 (465)
462 1g8f_A Sulfate adenylyltransfe 86.7 0.44 1.5E-05 54.4 4.4 47 89-139 372-418 (511)
463 1sgw_A Putative ABC transporte 86.7 0.28 9.7E-06 49.0 2.6 22 117-138 36-57 (214)
464 1xx6_A Thymidine kinase; NESG, 86.7 0.37 1.3E-05 47.1 3.3 24 116-139 8-31 (191)
465 3f9v_A Minichromosome maintena 86.7 0.22 7.7E-06 58.7 2.1 51 89-139 295-350 (595)
466 1q3t_A Cytidylate kinase; nucl 86.6 0.36 1.2E-05 49.5 3.4 24 115-138 15-38 (236)
467 1ji0_A ABC transporter; ATP bi 86.6 0.34 1.2E-05 49.7 3.1 22 117-138 33-54 (240)
468 2ghi_A Transport protein; mult 86.5 0.36 1.2E-05 50.2 3.3 22 117-138 47-68 (260)
469 1vpl_A ABC transporter, ATP-bi 86.5 0.36 1.2E-05 49.9 3.3 23 116-138 41-63 (256)
470 4g1u_C Hemin import ATP-bindin 86.5 0.34 1.2E-05 50.4 3.1 22 117-138 38-59 (266)
471 2pze_A Cystic fibrosis transme 86.4 0.35 1.2E-05 49.1 3.1 22 117-138 35-56 (229)
472 2ff7_A Alpha-hemolysin translo 86.4 0.35 1.2E-05 49.7 3.1 22 117-138 36-57 (247)
473 3oaa_A ATP synthase subunit al 86.3 1.4 4.6E-05 49.4 7.8 84 115-204 161-263 (513)
474 1p5z_B DCK, deoxycytidine kina 86.3 0.27 9.1E-06 51.5 2.2 24 115-138 23-46 (263)
475 1g6h_A High-affinity branched- 86.3 0.36 1.2E-05 50.1 3.1 22 117-138 34-55 (257)
476 2d2e_A SUFC protein; ABC-ATPas 86.3 0.37 1.3E-05 49.7 3.2 22 117-138 30-51 (250)
477 2zu0_C Probable ATP-dependent 86.2 0.38 1.3E-05 50.2 3.4 23 116-138 46-68 (267)
478 2ixe_A Antigen peptide transpo 86.2 0.37 1.3E-05 50.4 3.3 23 116-138 45-67 (271)
479 3eph_A TRNA isopentenyltransfe 86.2 0.38 1.3E-05 52.6 3.4 22 117-138 3-24 (409)
480 2c61_A A-type ATP synthase non 86.1 0.62 2.1E-05 52.0 5.0 89 116-204 152-258 (469)
481 2f9l_A RAB11B, member RAS onco 86.1 0.36 1.2E-05 47.9 3.0 24 116-139 5-28 (199)
482 4dzz_A Plasmid partitioning pr 86.1 0.51 1.8E-05 47.1 4.1 40 117-158 2-42 (206)
483 2j9r_A Thymidine kinase; TK1, 86.0 0.52 1.8E-05 46.5 3.9 110 115-235 27-138 (214)
484 3gqb_B V-type ATP synthase bet 86.0 0.84 2.9E-05 50.5 6.0 88 117-204 148-260 (464)
485 2fz4_A DNA repair protein RAD2 86.0 4.1 0.00014 41.4 11.0 20 119-138 111-130 (237)
486 2dyk_A GTP-binding protein; GT 86.0 0.45 1.5E-05 45.1 3.5 23 117-139 2-24 (161)
487 3lv8_A DTMP kinase, thymidylat 85.9 0.65 2.2E-05 47.1 4.8 24 116-139 27-50 (236)
488 1nlf_A Regulatory protein REPA 85.9 0.38 1.3E-05 50.9 3.2 23 116-138 30-52 (279)
489 2wjg_A FEOB, ferrous iron tran 85.9 0.55 1.9E-05 46.0 4.2 25 115-139 6-30 (188)
490 1cp2_A CP2, nitrogenase iron p 85.8 0.66 2.3E-05 48.7 5.1 39 117-157 2-40 (269)
491 2qi9_C Vitamin B12 import ATP- 85.8 0.39 1.3E-05 49.4 3.1 22 117-138 27-48 (249)
492 2yz2_A Putative ABC transporte 85.7 0.41 1.4E-05 49.9 3.3 23 116-138 33-55 (266)
493 3tqf_A HPR(Ser) kinase; transf 85.6 0.47 1.6E-05 44.7 3.2 22 117-138 17-38 (181)
494 2lkc_A Translation initiation 85.5 0.56 1.9E-05 45.3 4.1 25 115-139 7-31 (178)
495 3v9p_A DTMP kinase, thymidylat 85.4 0.51 1.7E-05 47.6 3.7 24 116-139 25-48 (227)
496 2nq2_C Hypothetical ABC transp 85.4 0.42 1.4E-05 49.4 3.1 22 117-138 32-53 (253)
497 2ihy_A ABC transporter, ATP-bi 85.4 0.42 1.4E-05 50.2 3.1 22 117-138 48-69 (279)
498 2r9v_A ATP synthase subunit al 85.3 1.1 3.9E-05 50.2 6.7 86 115-204 174-276 (515)
499 3iqw_A Tail-anchored protein t 85.2 0.7 2.4E-05 49.9 4.9 41 115-157 15-55 (334)
500 4tmk_A Protein (thymidylate ki 85.2 0.76 2.6E-05 45.9 4.8 23 117-139 4-26 (213)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.7e-49 Score=490.99 Aligned_cols=624 Identities=17% Similarity=0.099 Sum_probs=414.1
Q ss_pred HHHHhccCCceeEEEecCCCCcccCCccccCccccceeeccccccc-cccc--cccccccccEEecCCCcccccccccc-
Q 045303 492 LKMLLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQ-ILPE--SINSLYNLHTILLEDCWKLKKLCKDM- 567 (1206)
Q Consensus 492 ~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~--~~~~L~~L~~L~L~~n~~~~~lp~~~- 567 (1206)
++..+..+++|+.++++.+ .+..+|..|+++++|++|+|++|.+. .+|. .++++++|++|+|++|.....+|..+
T Consensus 69 l~~~l~~L~~L~~l~~~~~-~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 147 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147 (768)
T ss_dssp HHHHTTTCTTCCEEECTTS-CEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSC
T ss_pred cChhHhccCcccccCCcCC-CcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHh
Confidence 4456888999999999998 66677888999999999999999988 6777 89999999999999996666677665
Q ss_pred cCCCccceeecCCCCccccCCcc---cCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccc
Q 045303 568 GNLTKLRHLRNSNADELEEMPKG---FGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQ 644 (1206)
Q Consensus 568 ~~L~~L~~L~l~~n~~~~~~p~~---~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~ 644 (1206)
.++++|++|++++|.+....|.. ++++++|++|++..+.. .. ...
T Consensus 148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l------------------------------~~--~~~ 195 (768)
T 3rgz_A 148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI------------------------------SG--DVD 195 (768)
T ss_dssp CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEE------------------------------ES--CCB
T ss_pred ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcc------------------------------cc--cCC
Confidence 88999999999999855555555 67788888775432210 00 111
Q ss_pred cCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCC-CCCCCcCCCCCCCccEEEEcccCC-CCCCCC
Q 045303 645 LNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGT-KFPSWLGDSSFSKLARLELRLCMS-TSLPSV 722 (1206)
Q Consensus 645 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~-~~l~~l 722 (1206)
+..+++|++|++++|.+.... +.+..+++|+.|++++|.+. .+|.++. .+++|+.|++++|.+ ..+|..
T Consensus 196 ~~~l~~L~~L~Ls~n~l~~~~-------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~ 266 (768)
T 3rgz_A 196 VSRCVNLEFLDVSSNNFSTGI-------PFLGDCSALQHLDISGNKLSGDFSRAIS--TCTELKLLNISSNQFVGPIPPL 266 (768)
T ss_dssp CTTCTTCCEEECCSSCCCSCC-------CBCTTCCSCCEEECCSSCCCSCHHHHTT--TCSSCCEEECCSSCCEESCCCC
T ss_pred cccCCcCCEEECcCCcCCCCC-------cccccCCCCCEEECcCCcCCCcccHHHh--cCCCCCEEECCCCcccCccCcc
Confidence 356778899999888765422 23566788888888888876 4455564 688888888888888 344444
Q ss_pred CCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccC
Q 045303 723 GQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGT 802 (1206)
Q Consensus 723 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 802 (1206)
.+++|++|++++|.....++..+... +++|+.|+++++....... ...+.+++|++|++++ +.+++.
T Consensus 267 -~l~~L~~L~L~~n~l~~~ip~~~~~~-----~~~L~~L~Ls~n~l~~~~p------~~~~~l~~L~~L~L~~-n~l~~~ 333 (768)
T 3rgz_A 267 -PLKSLQYLSLAENKFTGEIPDFLSGA-----CDTLTGLDLSGNHFYGAVP------PFFGSCSLLESLALSS-NNFSGE 333 (768)
T ss_dssp -CCTTCCEEECCSSEEEESCCCCSCTT-----CTTCSEEECCSSEEEECCC------GGGGGCTTCCEEECCS-SEEEEE
T ss_pred -ccCCCCEEECcCCccCCccCHHHHhh-----cCcCCEEECcCCcCCCccc------hHHhcCCCccEEECCC-CcccCc
Confidence 78888888888887665555444331 4788888888875332221 2445678888888888 567667
Q ss_pred CC----CCCCCccEEEEeccc---CccccccCCC-CcceEEecCCCcceecCcchhhhhhhhh-cCCCCCcceeeeccCC
Q 045303 803 LP----RRLLLLETLDITSCH---QLLVTIQCLP-ALSELQIDGCKRVVFSSPHLVHAVNAWM-QNSSTSLESLAIGRCD 873 (1206)
Q Consensus 803 lp----~~l~~L~~L~l~~~~---~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 873 (1206)
+| ..+++|++|++++|. .++..+..++ +|+.|++++|.+.... +... ...+++|+.|++++|.
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~--------~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI--------LPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC--------CTTTTCSTTCCCCEEECCSSE
T ss_pred CCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc--------ChhhhhcccCCccEEECCCCc
Confidence 77 357788888888886 3445555555 7888888887643321 1111 1225678888888876
Q ss_pred Chhhh-cccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEE
Q 045303 874 SLTYI-ARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLG 952 (1206)
Q Consensus 874 ~l~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 952 (1206)
....+ ..+..+++|+.|++++|.....++ ..+..+ .+++.|++++|.....++......++|+.|+
T Consensus 406 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p------~~l~~l-------~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIP------SSLGSL-------SKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp EEEECCGGGGGCTTCCEEECCSSEEESCCC------GGGGGC-------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cccccCHHHhcCCCCCEEECcCCcccCccc------HHHhcC-------CCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 55333 345556777777777664221211 111121 2355555555553333333333334566666
Q ss_pred ecccCCcccchhhcC-CCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCcc
Q 045303 953 VESCSKLESLAERLD-NTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLK 1031 (1206)
Q Consensus 953 l~~~~~l~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~ 1031 (1206)
+++|.....+|..+. .++|++|++++|.+.+.+|..+.++++|++|+|++|++.+.+|..+..+++|+.|++++|.+.+
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 666655544444332 3566666666666666666666666666666666666666666666666666666666666665
Q ss_pred ccccccCCCCccCeee----------------------------------------------eecCCCCccCCCC-CCCC
Q 045303 1032 ALPNCMHNLTSLLDLD----------------------------------------------IRGCPSVVSFPED-GFPT 1064 (1206)
Q Consensus 1032 ~~p~~~~~l~~L~~L~----------------------------------------------L~~n~~~~~~~~~-~~~~ 1064 (1206)
.+|..+..+..+..++ ++.|.+.+.+|.. ..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 5555544433322221 1112222223322 4567
Q ss_pred CcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCC---CCcCcccccc
Q 045303 1065 NLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIG---ENLTSLKYLY 1141 (1206)
Q Consensus 1065 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~---~~l~~L~~L~ 1141 (1206)
+|+.|++++|.++|.+|. .+..+++|+.|+|++ +.....+|..++.++.|...++++|.+.+.+| ..+++|+.|+
T Consensus 633 ~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~-N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGH-NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp CCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccEEECcCCcccccCCH-HHhccccCCEEeCcC-CccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 899999999999999998 799999999999987 34445889888888888888899888887776 6788999999
Q ss_pred cccCCCCCCCCCCCCccccceecccCChhhHH----hhccCCCCCCCcccccCeeE
Q 045303 1142 LIDCPKLKYFPEQGLPKSLLQLHIKGCPLIEE----RCRKDEGKYWPMISHIPCVE 1193 (1206)
Q Consensus 1142 l~~n~~l~~l~~~~~~~~L~~L~l~~c~~l~~----~~~~~~~~~~~~~~~~~~~~ 1193 (1206)
+++|+....+|..+.+.++....+.+||.++. .|....+++|+|++|+|.++
T Consensus 711 ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 711 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 99998888899877788888888888886543 68889999999999998764
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-44 Score=451.41 Aligned_cols=622 Identities=15% Similarity=0.087 Sum_probs=358.1
Q ss_pred cceeEEEEecCCCccc--cccccccCCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEecCCCCcccCCc--c
Q 045303 444 QSLRHFSYSCGECDGE--KRLKSVSDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIFSLPN--E 519 (1206)
Q Consensus 444 ~~~r~ls~~~~~~~~~--~~~~~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~--~ 519 (1206)
..++.+.+........ .....+..++.|+.+........+ .+..|..+++|++|+|++|.....+|. .
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~--------l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING--------SVSGFKCSASLTSLDLSRNSLSGPVTTLTS 121 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE--------CCCCCCCCTTCCEEECCSSEEEEEGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC--------CchhhccCCCCCEEECCCCcCCCcCCChHH
Confidence 4566666655433221 012344556666665443321100 112378999999999999954456787 8
Q ss_pred ccCccccceeeccccccc-cccccc-cccccccEEecCCCccccccccc---ccCCCccceeecCCCCccccCCcccCCc
Q 045303 520 IGNLKHLRCLNLSRTRIQ-ILPESI-NSLYNLHTILLEDCWKLKKLCKD---MGNLTKLRHLRNSNADELEEMPKGFGKL 594 (1206)
Q Consensus 520 ~~~l~~L~~L~Ls~n~i~-~lp~~~-~~L~~L~~L~L~~n~~~~~lp~~---~~~L~~L~~L~l~~n~~~~~~p~~~~~l 594 (1206)
|+++++|++|+|++|.+. .+|..+ .++++|++||+++|......|.. +.++++|++|++++|.+....| +.++
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l 199 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTC
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccC
Confidence 999999999999999988 566655 89999999999999666666666 7899999999999999554443 3788
Q ss_pred CccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhc
Q 045303 595 TCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRM 674 (1206)
Q Consensus 595 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 674 (1206)
++|++|++..+..... +..+.++..|+ .+.+ ..+ .+....+..+..+++|+.|++++|.+....+ .
T Consensus 200 ~~L~~L~Ls~n~l~~~--~~~l~~l~~L~-~L~L---s~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-------~ 265 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTG--IPFLGDCSALQ-HLDI---SGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIP-------P 265 (768)
T ss_dssp TTCCEEECCSSCCCSC--CCBCTTCCSCC-EEEC---CSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCC-------C
T ss_pred CcCCEEECcCCcCCCC--CcccccCCCCC-EEEC---cCC-cCCCcccHHHhcCCCCCEEECCCCcccCccC-------c
Confidence 8888886654432210 11122222221 1111 111 1122233344455555555555544322111 0
Q ss_pred CCCCCCccEEEEEecCCC-CCCCCcCCCCCCCccEEEEcccCC-CCCC-CCCCCCCCceeeecCCCCceeeccc-ccCCC
Q 045303 675 LKPHRDVQELTITGYGGT-KFPSWLGDSSFSKLARLELRLCMS-TSLP-SVGQLPFLKELDISGMDGVVSVGSV-FYGNS 750 (1206)
Q Consensus 675 l~~~~~L~~L~l~~~~~~-~~p~~~~~~~~~~L~~L~L~~~~~-~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~ 750 (1206)
. .+++|+.|++++|.+. .+|.++.. .+++|+.|++++|.+ ..+| .++.+++|++|++++|.....++.. +..
T Consensus 266 ~-~l~~L~~L~L~~n~l~~~ip~~~~~-~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~-- 341 (768)
T 3rgz_A 266 L-PLKSLQYLSLAENKFTGEIPDFLSG-ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK-- 341 (768)
T ss_dssp C-CCTTCCEEECCSSEEEESCCCCSCT-TCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT--
T ss_pred c-ccCCCCEEECcCCccCCccCHHHHh-hcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc--
Confidence 1 2444555555554443 44444431 234555555555544 2222 3445555555555554443233222 222
Q ss_pred CCCCCCCccEEeccCcccccccccCCCCCcccccCC-cccEEeeccCcccccCCCCC-----CCCccEEEEeccc---Cc
Q 045303 751 CSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFP-KLRKLSLRHCDKLQGTLPRR-----LLLLETLDITSCH---QL 821 (1206)
Q Consensus 751 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~lp~~-----l~~L~~L~l~~~~---~~ 821 (1206)
+++|+.|+++++.....+.. ....++ +|+.|++++ +++++.+|.. +++|++|++++|. ..
T Consensus 342 ----l~~L~~L~Ls~n~l~~~~p~------~l~~l~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 410 (768)
T 3rgz_A 342 ----MRGLKVLDLSFNEFSGELPE------SLTNLSASLLTLDLSS-NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410 (768)
T ss_dssp ----CTTCCEEECCSSEEEECCCT------THHHHTTTCSEEECCS-SEEEEECCTTTTCSTTCCCCEEECCSSEEEEEC
T ss_pred ----CCCCCEEeCcCCccCccccH------HHHhhhcCCcEEEccC-CCcCCCcChhhhhcccCCccEEECCCCcccccc
Confidence 44555555544432111100 111222 455555554 3444333321 2344555554444 22
Q ss_pred cccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhh-cccCCCCCCCeEEEeccCCCcC
Q 045303 822 LVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYI-ARIQLPPSLKRLTIYWCHNLKS 900 (1206)
Q Consensus 822 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~L~~L~l~~~~~l~~ 900 (1206)
+..+..+++|+.|++++|.+..... ..+..+++|+.|++++|.....+ ..+..+++
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p---------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-------------- 467 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIP---------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-------------- 467 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCC---------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT--------------
T ss_pred CHHHhcCCCCCEEECcCCcccCccc---------HHHhcCCCCCEEECCCCcccCcCCHHHcCCCC--------------
Confidence 3334444455555554443221111 11122344444444444433222 12223333
Q ss_pred CcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcC-CCCcceeeeccc
Q 045303 901 LTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLD-NTSLEEITILNL 979 (1206)
Q Consensus 901 ~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~L~~L~l~~~ 979 (1206)
++.|++++|.....++......++|+.|++++|.....+|..+. .++|++|++++|
T Consensus 468 -----------------------L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 468 -----------------------LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp -----------------------CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred -----------------------ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 44455555443323332223335777777777776656665443 477888888888
Q ss_pred cCcCcccccccCCCccceeeccccCCcccccCCCCCCCCcc---------------------------------------
Q 045303 980 ENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLT--------------------------------------- 1020 (1206)
Q Consensus 980 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~--------------------------------------- 1020 (1206)
.+.+.+|..+.++++|++|+|++|++.+.+|..+..+..+.
T Consensus 525 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (768)
T 3rgz_A 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL 604 (768)
T ss_dssp CCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred cccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence 88777888888888888888888877777776554433222
Q ss_pred -------EEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcc
Q 045303 1021 -------ELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLR 1092 (1206)
Q Consensus 1021 -------~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~ 1092 (1206)
.++++.|.+.+.+|..+..+++|++|+|++|.+.+.+|.. +.+++|+.|+|++|.++|.+|. .+..+++|+
T Consensus 605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~ 683 (768)
T 3rgz_A 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLN 683 (768)
T ss_dssp GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCC
T ss_pred hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCC
Confidence 2223335555666777888888888888888888877766 7788888888888888888887 688888888
Q ss_pred eEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCC--CCcCcccccccccCCCCCCCC
Q 045303 1093 RFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIG--ENLTSLKYLYLIDCPKLKYFP 1152 (1206)
Q Consensus 1093 ~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~l~~l~ 1152 (1206)
.|+|++ |...+.+|..+..++.|...++++|.+.+.+| ..+.++....+.+|+.+-..|
T Consensus 684 ~LdLs~-N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 684 ILDLSS-NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp EEECCS-SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred EEECCC-CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence 888876 34444777777777788888888888877776 457777888888888765443
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=7.2e-43 Score=416.68 Aligned_cols=316 Identities=16% Similarity=0.215 Sum_probs=254.9
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc--CcccccccceeEEEEEcCCC--ChHHHHHHH
Q 045303 92 YGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN--DDRVQRHFQIKGWTCVSDDF--DVPRVTKSI 167 (1206)
Q Consensus 92 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i 167 (1206)
|||++++++|.++|.... ....++|+|+||||+||||||+++|+ +.+++.+|+.++|+++++.. +...++..+
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 23579999999999999999999997 66889999999999999875 789999999
Q ss_pred HHhccCCCC-------CCCCHHHHHHHHHHHhCCC-ceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHh
Q 045303 168 LESIANVTV-------DDNNLNSLQVKLKERLSGK-KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAE 239 (1206)
Q Consensus 168 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~ 239 (1206)
+++++.... ...+.+.+...+++.++++ |+||||||||+.++..|... +||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999876421 2234566788999999996 99999999999765445422 7999999999999988
Q ss_pred hcC-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCChhHHHHHHhhh
Q 045303 240 RMR-ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKND 318 (1206)
Q Consensus 240 ~~~-~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~ 318 (1206)
.+. ....++|++|+++||++||.+.+++.. .++...+++.+|+++|+|+||||+++|+.++.+ .+ .|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH
Confidence 765 335799999999999999999986543 246677899999999999999999999999765 33 222333333
Q ss_pred ccccCCCCchHHHHHhhcCCChhHHHHHh-----------hhcCCCCCcccCHHHHHHHHHHc--CCcccccCCCCHHHH
Q 045303 319 IWNLRDSDILPALRVSYHFLPPQLKQCFA-----------YCSLFPKDYEFQEEEIILLWTAE--GFLDQEYSGRKMEDL 385 (1206)
Q Consensus 319 ~~~~~~~~v~~~l~~s~~~L~~~~k~~~~-----------~l~~fp~~~~~~~~~l~~~w~~~--g~~~~~~~~~~~~~~ 385 (1206)
.+......+..++..||+.||++.|.||+ |||+||+++.|+ ++.|+|+ ||+.....+...+++
T Consensus 355 l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~ 430 (549)
T 2a5y_B 355 LESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEV 430 (549)
T ss_dssp HHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHH
T ss_pred hhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHH
Confidence 33333457888999999999999999999 999999999999 8899999 999876545667777
Q ss_pred HHHHHHHHHhCCccccccCC-CCceeehHHHHHHHHHhhccceE
Q 045303 386 GREFVRELHSRSLFQQSSKG-ASRFVMHDLINDLARWAAGELYF 428 (1206)
Q Consensus 386 ~~~~l~~L~~~~ll~~~~~~-~~~~~~H~lv~~~~~~~~~~~~~ 428 (1206)
++ ++++|+++||++....+ ..+|+|||+||+||++++.+++.
T Consensus 431 ~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 431 AD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 77 99999999999986543 45799999999999998877654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.5e-39 Score=399.63 Aligned_cols=555 Identities=18% Similarity=0.155 Sum_probs=292.1
Q ss_pred CceeEEEecCCCCcccCC-ccccCccccceeeccccccccc-cccccccccccEEecCCCcccccccc-cccCCCcccee
Q 045303 500 PRLRVFSLCGYSNIFSLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHL 576 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~-~~~~L~~L~~L 576 (1206)
++|++|+|++| .+..+| ..|.++++|++|++++|.++.+ |..|.++++|++|+|++| .+..+|. .|+++++|++|
T Consensus 25 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEE
Confidence 56788888887 666665 4578888888888888887754 556778888888888887 5556655 47888888888
Q ss_pred ecCCCCccccCC-cccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceE
Q 045303 577 RNSNADELEEMP-KGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALS 655 (1206)
Q Consensus 577 ~l~~n~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 655 (1206)
++++|. +..+| ..|+++++|++|++..+. +....+..+..+++|+.|+
T Consensus 103 ~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~------------------------------l~~~~~~~~~~l~~L~~L~ 151 (680)
T 1ziw_A 103 HLMSNS-IQKIKNNPFVKQKNLITLDLSHNG------------------------------LSSTKLGTQVQLENLQELL 151 (680)
T ss_dssp ECCSSC-CCCCCSCTTTTCTTCCEEECCSSC------------------------------CSCCCCCSSSCCTTCCEEE
T ss_pred ECCCCc-cCccChhHccccCCCCEEECCCCc------------------------------ccccCchhhcccccCCEEE
Confidence 888887 44444 457777777777543221 1112233456677777777
Q ss_pred EeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCC-----CCCCCCCCCCce
Q 045303 656 LEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTS-----LPSVGQLPFLKE 730 (1206)
Q Consensus 656 l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~-----l~~l~~l~~L~~ 730 (1206)
+++|.+.......... ...++|+.|++++|.+..++.... ..+.+|+.|++.++.+.. ++..-..++|+.
T Consensus 152 L~~n~l~~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~ 226 (680)
T 1ziw_A 152 LSNNKIQALKSEELDI----FANSSLKKLELSSNQIKEFSPGCF-HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRN 226 (680)
T ss_dssp CCSSCCCCBCHHHHGG----GTTCEESEEECTTCCCCCBCTTGG-GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCE
T ss_pred ccCCcccccCHHHhhc----cccccccEEECCCCcccccChhhh-hhhhhhhhhhccccccChhhHHHHHHHhhhccccE
Confidence 7777765543332211 123567777777766655443222 145666666666665410 000012356677
Q ss_pred eeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCC---CCC
Q 045303 731 LDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLP---RRL 807 (1206)
Q Consensus 731 L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp---~~l 807 (1206)
|++++|......+..|.+. ..++|+.|+++++.. ....+ ...+.+++|++|++++ +.+++..| ..+
T Consensus 227 L~L~~n~l~~~~~~~~~~l----~~~~L~~L~Ls~n~l-~~~~~-----~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l 295 (680)
T 1ziw_A 227 LSLSNSQLSTTSNTTFLGL----KWTNLTMLDLSYNNL-NVVGN-----DSFAWLPQLEYFFLEY-NNIQHLFSHSLHGL 295 (680)
T ss_dssp EECTTSCCCEECTTTTGGG----GGSCCCEEECTTSCC-CEECT-----TTTTTCTTCCEEECCS-CCBSEECTTTTTTC
T ss_pred EEccCCcccccChhHhhcc----CcCCCCEEECCCCCc-CccCc-----ccccCcccccEeeCCC-CccCccChhhhcCC
Confidence 7776666555444433320 012366666655432 11111 1233456666666666 44543333 234
Q ss_pred CCccEEEEecccC--------ccc----cccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCCh
Q 045303 808 LLLETLDITSCHQ--------LLV----TIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSL 875 (1206)
Q Consensus 808 ~~L~~L~l~~~~~--------~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 875 (1206)
++|+.|++++|.. ++. .+..+++|++|++++|.+..+.. ..+..+
T Consensus 296 ~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~---------~~~~~l-------------- 352 (680)
T 1ziw_A 296 FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS---------NMFTGL-------------- 352 (680)
T ss_dssp TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT---------TTTTTC--------------
T ss_pred CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh---------hHhccc--------------
Confidence 4555555544321 010 23444445555554444322211 112233
Q ss_pred hhhcccCCCCCCCeEEEeccCC-CcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEec
Q 045303 876 TYIARIQLPPSLKRLTIYWCHN-LKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVE 954 (1206)
Q Consensus 876 ~~~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 954 (1206)
++|+.|++++|.. ...++.. .+.. ...++|+.|+++
T Consensus 353 ---------~~L~~L~Ls~n~~~~~~l~~~-----~f~~-----------------------------~~~~~L~~L~L~ 389 (680)
T 1ziw_A 353 ---------INLKYLSLSNSFTSLRTLTNE-----TFVS-----------------------------LAHSPLHILNLT 389 (680)
T ss_dssp ---------TTCCEEECTTCBSCCCEECTT-----TTGG-----------------------------GTTSCCCEEECT
T ss_pred ---------cCCcEEECCCCchhhhhcchh-----hhcc-----------------------------cccCcCceEECC
Confidence 4444444433320 0000000 0000 000234444444
Q ss_pred ccCCcccchhhc-CCCCcceeeeccccCcCccc-ccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCc--
Q 045303 955 SCSKLESLAERL-DNTSLEEITILNLENLKSLP-AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENL-- 1030 (1206)
Q Consensus 955 ~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-- 1030 (1206)
+|......+..+ ..++|+.|++++|.+.+.+| ..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 469 (680)
T 1ziw_A 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469 (680)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence 444333322222 23555566666555554443 34555666666666666555555555555566666666665543
Q ss_pred cccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCC-------CccCCCCCCCcceEEeecCCCC
Q 045303 1031 KALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPL-------PEWGFNRFTSLRRFTICGGCPD 1102 (1206)
Q Consensus 1031 ~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~-------p~~~~~~l~~L~~L~ls~~~~~ 1102 (1206)
+.+|..|.++++|++|++++|.+.+..+.. ..+++|++|++++|.+++.. |...|.++++|+.|++++ +.
T Consensus 470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~ 547 (680)
T 1ziw_A 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES--NG 547 (680)
T ss_dssp TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SC
T ss_pred ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC--CC
Confidence 344555566666666666666555443332 45556666666666555321 111255566666666654 34
Q ss_pred ceecCC-CCCCCcceeeccCCCCcccc---CCCCCcCcccccccccCCCCCCCCCCC---CccccceecccCChhhH
Q 045303 1103 LVSLPP-FPASLTGLEISDMPDLECLS---SIGENLTSLKYLYLIDCPKLKYFPEQG---LPKSLLQLHIKGCPLIE 1172 (1206)
Q Consensus 1103 l~~lp~-~~~~L~~L~~~~~~~~~~~~---~~~~~l~~L~~L~l~~n~~l~~l~~~~---~~~~L~~L~l~~c~~l~ 1172 (1206)
+..+|. .+..+..|...+++++.+.. ..+..+++|+.|++++| .++.++... .+++|+.|++++||..+
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCccc
Confidence 555554 23444444444444433332 22356788888888888 677766533 25678888888888643
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.3e-36 Score=378.85 Aligned_cols=543 Identities=18% Similarity=0.128 Sum_probs=351.3
Q ss_pred eEEEecCCCCcccCCccccCccccceeeccccccccccc-cccccccccEEecCCCcccccccccccCCCccceeecCCC
Q 045303 503 RVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNA 581 (1206)
Q Consensus 503 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n 581 (1206)
++++++++ .+..+|..+. ++|++|+|++|.++.+|. .|.++++|++|++++|......|..|+++++|++|++++|
T Consensus 7 ~~~~cs~~-~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHL-KLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSS-CCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCC-CccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 67889988 8899998776 799999999999998775 5999999999999999655666778999999999999999
Q ss_pred CccccCCc-ccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecC
Q 045303 582 DELEEMPK-GFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSA 660 (1206)
Q Consensus 582 ~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 660 (1206)
. +..+|. .|+++++|++|++..+. +....+..|.++++|+.|++++|.
T Consensus 84 ~-l~~l~~~~~~~l~~L~~L~L~~n~------------------------------l~~~~~~~~~~l~~L~~L~Ls~n~ 132 (680)
T 1ziw_A 84 E-LSQLSDKTFAFCTNLTELHLMSNS------------------------------IQKIKNNPFVKQKNLITLDLSHNG 132 (680)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSSC------------------------------CCCCCSCTTTTCTTCCEEECCSSC
T ss_pred c-cCccChhhhccCCCCCEEECCCCc------------------------------cCccChhHccccCCCCEEECCCCc
Confidence 8 667776 48888888888543221 112223446677778888887776
Q ss_pred CCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCC-cCCCCCCCccEEEEcccCCCCCC--CCCCCCCCceeeecCCC
Q 045303 661 RSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSW-LGDSSFSKLARLELRLCMSTSLP--SVGQLPFLKELDISGMD 737 (1206)
Q Consensus 661 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~ 737 (1206)
+.... ...+..+++|+.|++++|.+..++.. +....+++|+.|++++|.+..++ .++.+++|+.|+++++.
T Consensus 133 l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 133 LSSTK------LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CSCCC------CCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred ccccC------chhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 54321 12234455666666666655544432 11112355666666666553332 34555555555555544
Q ss_pred CceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCCC-----CCccE
Q 045303 738 GVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRL-----LLLET 812 (1206)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l-----~~L~~ 812 (1206)
........+.. ....++|+.|++++ +.+++..|..+ ++|+.
T Consensus 207 l~~~~~~~~~~---------------------------------~l~~~~L~~L~L~~-n~l~~~~~~~~~~l~~~~L~~ 252 (680)
T 1ziw_A 207 LGPSLTEKLCL---------------------------------ELANTSIRNLSLSN-SQLSTTSNTTFLGLKWTNLTM 252 (680)
T ss_dssp CHHHHHHHHHH---------------------------------HHTTSCCCEEECTT-SCCCEECTTTTGGGGGSCCCE
T ss_pred cChhhHHHHHH---------------------------------HhhhccccEEEccC-CcccccChhHhhccCcCCCCE
Confidence 22111000000 00124555555555 34443333222 22555
Q ss_pred EEEecccC---ccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhh-----c-----
Q 045303 813 LDITSCHQ---LLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYI-----A----- 879 (1206)
Q Consensus 813 L~l~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-----~----- 879 (1206)
|++++|.. .+..+..+++|++|++++|.+..+.. ..+..+++|+.|++++|..-..+ +
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS---------HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT---------TTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred EECCCCCcCccCcccccCcccccEeeCCCCccCccCh---------hhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 55555541 12235556666666666665443322 12344556666666554221110 0
Q ss_pred ccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCC-
Q 045303 880 RIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSK- 958 (1206)
Q Consensus 880 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~- 958 (1206)
.+..+++|+.|+++++. --...+......++|+.|++++|..
T Consensus 324 ~~~~l~~L~~L~l~~n~-------------------------------------l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDND-------------------------------------IPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp TTTTCTTCCEEECCSCC-------------------------------------BCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred hcccCCCCCEEECCCCc-------------------------------------cCCCChhHhccccCCcEEECCCCchh
Confidence 12233444444444432 1111111111224667777766642
Q ss_pred cccchhh----cCCCCcceeeeccccCcCcccccccCCCccceeeccccCCccccc-CCCCCCCCccEEEeccccCcccc
Q 045303 959 LESLAER----LDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFP-EEGLPSTKLTELTIWDCENLKAL 1033 (1206)
Q Consensus 959 l~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~ 1033 (1206)
+..++.. ....+|+.|++++|.+.+..|..+.++++|++|++++|.+.+.++ ..+.++++|++|++++|.+.+..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 2222211 123689999999999998889999999999999999999887665 57888999999999999998888
Q ss_pred ccccCCCCccCeeeeecCCCC--ccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCC--
Q 045303 1034 PNCMHNLTSLLDLDIRGCPSV--VSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP-- 1108 (1206)
Q Consensus 1034 p~~~~~l~~L~~L~L~~n~~~--~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~-- 1108 (1206)
+..|..+++|+.|++++|.+. +..|.. ..+++|+.|++++|.+++..+ ..|.++++|+.|++++ +.+..++.
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~Ls~--N~l~~~~~~~ 523 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQH--NNLARLWKHA 523 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS--SCCGGGGSTT
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh-hhhccccccCEEeCCC--CCccccchhh
Confidence 899999999999999999875 345544 788999999999999986444 4799999999999987 55665421
Q ss_pred -------CCCCCcceeeccCCCCccc---cCCCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCCh
Q 045303 1109 -------FPASLTGLEISDMPDLECL---SSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCP 1169 (1206)
Q Consensus 1109 -------~~~~L~~L~~~~~~~~~~~---~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~ 1169 (1206)
.+..+..|...+++++.+. ...+..+++|+.|++++| .++.+|...+ +++|+.|++++|.
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNL 595 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCc
Confidence 2444455555555544433 334578999999999999 7888887544 6899999999994
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1e-36 Score=374.61 Aligned_cols=494 Identities=16% Similarity=0.070 Sum_probs=300.1
Q ss_pred CceeEEEecCCCCcccCC-ccccCccccceeeccccccccc-cccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 500 PRLRVFSLCGYSNIFSLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
+.|++|+|++| .+..++ ..|.++++|++|++++|.++.+ |..|.++++|++|+|++|......|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 67888999988 666665 5788899999999999988866 55788899999999998854444477888999999999
Q ss_pred cCCCCccccCC-cccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEE
Q 045303 578 NSNADELEEMP-KGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSL 656 (1206)
Q Consensus 578 l~~n~~~~~~p-~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l 656 (1206)
+++|. +..++ ..++++++|++|++..+.. .....+..+.++++|+.|++
T Consensus 111 L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-----------------------------~~~~lp~~~~~l~~L~~L~L 160 (606)
T 3vq2_A 111 AVETK-LASLESFPIGQLITLKKLNVAHNFI-----------------------------HSCKLPAYFSNLTNLVHVDL 160 (606)
T ss_dssp CTTSC-CCCSSSSCCTTCTTCCEEECCSSCC-----------------------------CCCCCCGGGGTCTTCCEEEC
T ss_pred ccCCc-cccccccccCCCCCCCEEeCCCCcc-----------------------------cceechHhHhhcCCCCEEEc
Confidence 99888 44444 6688888888885433211 00012445777888888888
Q ss_pred eecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCC--CCC-CCCCCCCCceeee
Q 045303 657 EWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMST--SLP-SVGQLPFLKELDI 733 (1206)
Q Consensus 657 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~--~l~-~l~~l~~L~~L~L 733 (1206)
++|.+..........+..+. ..+..+++++|.+..+|...+ ...+|+.|++++|.+. .++ .++.+++|+.+.+
T Consensus 161 s~n~l~~~~~~~~~~l~~L~--~~l~~L~l~~n~l~~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l 236 (606)
T 3vq2_A 161 SYNYIQTITVNDLQFLRENP--QVNLSLDMSLNPIDFIQDQAF--QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236 (606)
T ss_dssp CSSCCCEECTTTTHHHHHCT--TCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEE
T ss_pred cCCcceecChhhhhhhhccc--cccceeeccCCCcceeCcccc--cCceeeeeeccCCccchhHHHHHhccccccccccc
Confidence 88887654433322222221 125578888888877776665 3347888888888763 222 4667777777776
Q ss_pred cCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCC--CCCCCcc
Q 045303 734 SGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLP--RRLLLLE 811 (1206)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp--~~l~~L~ 811 (1206)
........ ..+..+.-.. +.. .. --.++.+.+..++.+.+.+| ..+++|+
T Consensus 237 ~~~~~~~~--------------~~l~~~~~~~---~~~----------l~-~l~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 237 ILGEFKDE--------------RNLEIFEPSI---MEG----------LC-DVTIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEECCTTS--------------CCCSCCCGGG---GTT----------GG-GSEEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred cccccccC--------------CcccccChHH---hhh----------hh-hccHhheeccccccccccccccccCCCCC
Confidence 43221100 0000000000 000 00 01345555544455554444 2345556
Q ss_pred EEEEeccc--CccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCe
Q 045303 812 TLDITSCH--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKR 889 (1206)
Q Consensus 812 ~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 889 (1206)
.|++++|. .++ .+..+++|+.|++++|....+ +. + .+++|+.|++++|.....+ ....+++|+.
T Consensus 289 ~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~l---------p~--~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~ 354 (606)
T 3vq2_A 289 AMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQF---------PT--L-DLPFLKSLTLTMNKGSISF-KKVALPSLSY 354 (606)
T ss_dssp EEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSC---------CC--C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCE
T ss_pred EEEecCccchhhh-hccccccCCEEEcccccCccc---------cc--C-CCCccceeeccCCcCccch-hhccCCCCCE
Confidence 66665555 222 344555566666665543222 10 1 3455555555555433322 2223344444
Q ss_pred EEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcCCC
Q 045303 890 LTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLDNT 969 (1206)
Q Consensus 890 L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 969 (1206)
|++++|.. ..+ ...+......++|+.|++++|............+
T Consensus 355 L~ls~n~l---------------------------~~~--------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~ 399 (606)
T 3vq2_A 355 LDLSRNAL---------------------------SFS--------GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399 (606)
T ss_dssp EECCSSCE---------------------------EEE--------EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCT
T ss_pred EECcCCcc---------------------------CCC--------cchhhhhccCCcccEeECCCCccccchhhccCCC
Confidence 44444320 000 0000011112356666666665322222223347
Q ss_pred CcceeeeccccCcCccc-ccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCcc-ccccccCCCCccCeee
Q 045303 970 SLEEITILNLENLKSLP-AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLK-ALPNCMHNLTSLLDLD 1047 (1206)
Q Consensus 970 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~ 1047 (1206)
+|+.|++++|.+.+..| ..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..++.+++|++|+
T Consensus 400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 479 (606)
T 3vq2_A 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479 (606)
T ss_dssp TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEE
Confidence 77788888777777666 567778888888888887777777777777888888888887776 3677777888888888
Q ss_pred eecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCC
Q 045303 1048 IRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP 1108 (1206)
Q Consensus 1048 L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~ 1108 (1206)
+++|.+.+..|.. ..+++|++|++++|++++..|. .+..+++|++|++++ +.++.+|.
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~--N~l~~~p~ 538 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSF--NRIETSKG 538 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTT--SCCCCEES
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCC--CcCcccCH
Confidence 8888777766554 6677888888888888766565 677788888888865 44556654
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-35 Score=364.94 Aligned_cols=514 Identities=16% Similarity=0.119 Sum_probs=301.2
Q ss_pred EEEecCCCCcccCCccccCccccceeeccccccccc-cccccccccccEEecCCCcccccccccccCCCccceeecCCCC
Q 045303 504 VFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 504 ~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~ 582 (1206)
.++.++. .+..+|..+. .++++|++++|.|+.+ |..|.++++|++|+|++|......|..|+++++|++|++++|.
T Consensus 16 ~~~c~~~-~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENL-GLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTS-CCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCC-CcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4555655 6667776665 3677777777777755 4567777777777777774444446667777777777777776
Q ss_pred ccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCC
Q 045303 583 ELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARS 662 (1206)
Q Consensus 583 ~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 662 (1206)
+....|..|+++++|++| ++++|.+.
T Consensus 93 l~~~~~~~~~~l~~L~~L------------------------------------------------------~L~~n~i~ 118 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHL------------------------------------------------------FFIQTGIS 118 (606)
T ss_dssp CSEECTTTTSSCTTCCEE------------------------------------------------------ECTTSCCS
T ss_pred ccccChhhhcccccccEe------------------------------------------------------eccccCcc
Confidence 333334444444444444 22222221
Q ss_pred cchhhHHHHhhcCCCCCCccEEEEEecCCCCC--CCCcCCCCCCCccEEEEcccCCCCCC--CCCCCCCCc--eeeecCC
Q 045303 663 ERCEFEADVLRMLKPHRDVQELTITGYGGTKF--PSWLGDSSFSKLARLELRLCMSTSLP--SVGQLPFLK--ELDISGM 736 (1206)
Q Consensus 663 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~--~L~L~~~ 736 (1206)
... ...+..+++|+.|++++|.+..+ |..+ .+++|+.|++++|.+..++ .++.+++|+ .|++++|
T Consensus 119 ~l~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 119 SID------FIPLHNQKTLESLYLGSNHISSIKLPKGF---PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CGG------GSCCTTCTTCCEEECCSSCCCCCCCCTTC---CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred cCC------cchhccCCcccEEECCCCcccccCccccc---CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 100 00112233344444444444333 2222 2566666666666664443 355566666 5666665
Q ss_pred CCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCCCCC--ccEEE
Q 045303 737 DGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRLLL--LETLD 814 (1206)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~--L~~L~ 814 (1206)
......+..| ..++|+.|++++|..+. ..+..+.. ++.+.
T Consensus 190 ~l~~~~~~~~-------------------------------------~~~~L~~L~l~~~~~~~-~~~~~l~~~~l~~l~ 231 (606)
T 3t6q_A 190 DIAGIEPGAF-------------------------------------DSAVFQSLNFGGTQNLL-VIFKGLKNSTIQSLW 231 (606)
T ss_dssp CCCEECTTTT-------------------------------------TTCEEEEEECTTCSCHH-HHHHHTTTCEEEEEE
T ss_pred ccCccChhHh-------------------------------------hhccccccccCCchhHH-HHhhhccccchhhee
Confidence 5443332221 13467777777765333 22222322 23333
Q ss_pred EecccCc------cccccCCC--CcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCC
Q 045303 815 ITSCHQL------LVTIQCLP--ALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPS 886 (1206)
Q Consensus 815 l~~~~~~------~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 886 (1206)
+..+... ...+..+. +|+.|++++|.+..+.. ..+..+++|++|++++|........+..+++
T Consensus 232 ~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~ 302 (606)
T 3t6q_A 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS---------NTFHCFSGLQELDLTATHLSELPSGLVGLST 302 (606)
T ss_dssp CCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT---------TTTTTCTTCSEEECTTSCCSCCCSSCCSCTT
T ss_pred chhhccccccccChhHhchhhcCceeEEEeecCccCccCH---------HHhccccCCCEEeccCCccCCCChhhccccc
Confidence 3322211 11122222 56777777776544322 2345567777777777654322223344455
Q ss_pred CCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchh--
Q 045303 887 LKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAE-- 964 (1206)
Q Consensus 887 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-- 964 (1206)
|+.|++++|. .....+......++|+.|++++|.....++.
T Consensus 303 L~~L~l~~n~-------------------------------------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 303 LKKLVLSANK-------------------------------------FENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp CCEEECTTCC-------------------------------------CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred CCEEECccCC-------------------------------------cCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 5555555543 1111111112224667777777665544432
Q ss_pred hcCCCCcceeeeccccCcCcc--cccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCcccccc-ccCCCC
Q 045303 965 RLDNTSLEEITILNLENLKSL--PAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPN-CMHNLT 1041 (1206)
Q Consensus 965 ~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~ 1041 (1206)
....++|++|++++|.+.+.. +..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|. .+.+++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 223477888888888776654 66778888888888888877777777788888888888888887766554 377888
Q ss_pred ccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCC-CCc-cCCCCCCCcceEEeecCCCCceec-CCCCCCCccee
Q 045303 1042 SLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKP-LPE-WGFNRFTSLRRFTICGGCPDLVSL-PPFPASLTGLE 1117 (1206)
Q Consensus 1042 ~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~-~p~-~~~~~l~~L~~L~ls~~~~~l~~l-p~~~~~L~~L~ 1117 (1206)
+|++|++++|.+.+..|.. ..+++|++|++++|.+++. ++. ..+..+++|+.|++++ +.+..+ |..+..++.|.
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF--CDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT--SCCCEECTTTTTTCTTCC
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC--CccCccChhhhccccCCC
Confidence 8888888888877766654 6678888888888887642 221 2577788888888875 455555 44555555555
Q ss_pred eccCCCCccccC---CCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCChhh
Q 045303 1118 ISDMPDLECLSS---IGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCPLI 1171 (1206)
Q Consensus 1118 ~~~~~~~~~~~~---~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~~l 1171 (1206)
..+++++.+.+. .+..+++| .|++++| .++.++...+ +++|+.|++++||..
T Consensus 504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp EEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred EEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCCCcc
Confidence 555555555443 33667788 8999999 5666665433 678999999999864
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-35 Score=363.39 Aligned_cols=510 Identities=16% Similarity=0.128 Sum_probs=279.8
Q ss_pred eEEEecCCCCcccCCccccCccccceeeccccccccccc-cccccccccEEecCCCcccccccccccCCCccceeecCCC
Q 045303 503 RVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNA 581 (1206)
Q Consensus 503 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n 581 (1206)
++++.+++ .++.+|..+. .+|++|+|++|.++.+|. .|.++++|++|++++|......|..|+++++|++|++++|
T Consensus 14 ~~~~c~~~-~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQ-KLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTS-CCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCC-CcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 57888888 8999998776 899999999999997765 7999999999999999544445778999999999999999
Q ss_pred CccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCC
Q 045303 582 DELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSAR 661 (1206)
Q Consensus 582 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 661 (1206)
.+....|..|+++++|++|++ ++|.+
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L------------------------------------------------------~~n~l 116 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVA------------------------------------------------------VETKL 116 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEEC------------------------------------------------------TTSCC
T ss_pred cccccChhhcCCcccCCEEEc------------------------------------------------------cCCcc
Confidence 843333666666666665532 22221
Q ss_pred CcchhhHHHHhhcCCCCCCccEEEEEecCCC--CCCCCcCCCCCCCccEEEEcccCCCCCC--CCCCCCCCc----eeee
Q 045303 662 SERCEFEADVLRMLKPHRDVQELTITGYGGT--KFPSWLGDSSFSKLARLELRLCMSTSLP--SVGQLPFLK----ELDI 733 (1206)
Q Consensus 662 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~p~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~----~L~L 733 (1206)
..... ..+..+++|+.|++++|.+. .+|..+. .+++|++|++++|.+..++ .++.+++|+ +|++
T Consensus 117 ~~~~~------~~~~~l~~L~~L~L~~n~l~~~~lp~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 117 ASLES------FPIGQLITLKKLNVAHNFIHSCKLPAYFS--NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp CCSSS------SCCTTCTTCCEEECCSSCCCCCCCCGGGG--TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred ccccc------cccCCCCCCCEEeCCCCcccceechHhHh--hcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 11000 01122233333333333333 2444443 4556666666666553332 233333332 4555
Q ss_pred cCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCccccc-CCC---CCCCC
Q 045303 734 SGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQG-TLP---RRLLL 809 (1206)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~lp---~~l~~ 809 (1206)
++|.........+ ...+|+.|++++ +.+.+ .+| ..++.
T Consensus 189 ~~n~l~~~~~~~~-------------------------------------~~~~L~~L~L~~-n~~~~~~~~~~~~~l~~ 230 (606)
T 3vq2_A 189 SLNPIDFIQDQAF-------------------------------------QGIKLHELTLRG-NFNSSNIMKTCLQNLAG 230 (606)
T ss_dssp TTCCCCEECTTTT-------------------------------------TTCEEEEEEEES-CCSCHHHHHHHHHTTTT
T ss_pred cCCCcceeCcccc-------------------------------------cCceeeeeeccC-CccchhHHHHHhccccc
Confidence 5544322211111 123677788877 44432 223 35566
Q ss_pred ccEEEEecccCc-----c----ccccCCC--CcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhh
Q 045303 810 LETLDITSCHQL-----L----VTIQCLP--ALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYI 878 (1206)
Q Consensus 810 L~~L~l~~~~~~-----~----~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 878 (1206)
|+.+.+...... . ..+..+. .++.+++..+ +.+.+.++. +..+++|+.+++++|.. ..+
T Consensus 231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~-------~~~~~~~~~--~~~l~~L~~L~l~~~~~-~~l 300 (606)
T 3vq2_A 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT-------NDFSDDIVK--FHCLANVSAMSLAGVSI-KYL 300 (606)
T ss_dssp CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC-------TTCCGGGGS--CGGGTTCSEEEEESCCC-CCC
T ss_pred cccccccccccccCCcccccChHHhhhhhhccHhheecccc-------ccccccccc--cccCCCCCEEEecCccc-hhh
Confidence 666655432200 0 0011111 1222222111 122222222 34455666666665543 233
Q ss_pred cccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCC
Q 045303 879 ARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSK 958 (1206)
Q Consensus 879 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~ 958 (1206)
+.+..+++|+.|++++|. . ..++.. ..++|+.|++++|..
T Consensus 301 ~~l~~~~~L~~L~l~~n~-------------------------------------l-~~lp~~--~l~~L~~L~l~~n~~ 340 (606)
T 3vq2_A 301 EDVPKHFKWQSLSIIRCQ-------------------------------------L-KQFPTL--DLPFLKSLTLTMNKG 340 (606)
T ss_dssp CCCCTTCCCSEEEEESCC-------------------------------------C-SSCCCC--CCSSCCEEEEESCSS
T ss_pred hhccccccCCEEEccccc-------------------------------------C-cccccC--CCCccceeeccCCcC
Confidence 334444455555555543 2 222211 223555555555544
Q ss_pred cccchhhcCCCCcceeeeccccCcCc--ccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccc-c
Q 045303 959 LESLAERLDNTSLEEITILNLENLKS--LPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALP-N 1035 (1206)
Q Consensus 959 l~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~ 1035 (1206)
+..+ .....++|++|++++|.+.+. +|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| .
T Consensus 341 ~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 418 (606)
T 3vq2_A 341 SISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFS 418 (606)
T ss_dssp CEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTT
T ss_pred ccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChh
Confidence 4333 222345666666666655443 24555566666666666664333 44555566666666666666665555 4
Q ss_pred ccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCC-CCccCCCCCCCcceEEeecCCCCceec-CCCCCC
Q 045303 1036 CMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKP-LPEWGFNRFTSLRRFTICGGCPDLVSL-PPFPAS 1112 (1206)
Q Consensus 1036 ~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~ls~~~~~l~~l-p~~~~~ 1112 (1206)
.+.++++|++|++++|.+.+..|.. ..+++|++|++++|.+++. +|. .+..+++|++|++++ +.++.+ |..+..
T Consensus 419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~ 495 (606)
T 3vq2_A 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN-VFANTTNLTFLDLSK--CQLEQISWGVFDT 495 (606)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTT--SCCCEECTTTTTT
T ss_pred hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH-hhccCCCCCEEECCC--CcCCccChhhhcc
Confidence 5666666666666666665554443 5556666666666666542 333 566666666666654 233333 333333
Q ss_pred CcceeeccCCCCccc---cCCCCCcCcccccccccCCCCCCCCCC--CCccccceecccCChhh
Q 045303 1113 LTGLEISDMPDLECL---SSIGENLTSLKYLYLIDCPKLKYFPEQ--GLPKSLLQLHIKGCPLI 1171 (1206)
Q Consensus 1113 L~~L~~~~~~~~~~~---~~~~~~l~~L~~L~l~~n~~l~~l~~~--~~~~~L~~L~l~~c~~l 1171 (1206)
++.|...+++++.+. +..+..+++|+.|++++| .++.+|.. .++++|+.|++++||..
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCCcc
Confidence 333333333333332 334467889999999999 57788864 23457999999998864
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=6.2e-35 Score=358.71 Aligned_cols=501 Identities=13% Similarity=0.061 Sum_probs=277.3
Q ss_pred CceeEEEecCCCCcccC-CccccCccccceeeccccccccc-cccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 500 PRLRVFSLCGYSNIFSL-PNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
+.+++|+|++| .+..+ |.+|.++++|++|+|++|.+..+ |..|.++++|++|+|++|......|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 36899999999 66666 67899999999999999999855 77899999999999999966566688899999999999
Q ss_pred cCCCCccccC-CcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEE
Q 045303 578 NSNADELEEM-PKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSL 656 (1206)
Q Consensus 578 l~~n~~~~~~-p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l 656 (1206)
+++|. +..+ |..++++++|++|++..+.. .......+..+++|+.|++
T Consensus 112 L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l------------------------------~~~~~~~~~~l~~L~~L~L 160 (606)
T 3t6q_A 112 FIQTG-ISSIDFIPLHNQKTLESLYLGSNHI------------------------------SSIKLPKGFPTEKLKVLDF 160 (606)
T ss_dssp CTTSC-CSCGGGSCCTTCTTCCEEECCSSCC------------------------------CCCCCCTTCCCTTCCEEEC
T ss_pred ccccC-cccCCcchhccCCcccEEECCCCcc------------------------------cccCcccccCCcccCEEEc
Confidence 99998 4444 55677777777774432210 1111122333667777777
Q ss_pred eecCCCcchhhHHHHhhcCCCCCCcc--EEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC-CCCCCCCCceeee
Q 045303 657 EWSARSERCEFEADVLRMLKPHRDVQ--ELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP-SVGQLPFLKELDI 733 (1206)
Q Consensus 657 ~~n~~~~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L 733 (1206)
++|.+....+... ..+++|+ .|++++|.+..++...+ ...+|+.|++++|.. ++ .+..+.++
T Consensus 161 ~~n~l~~~~~~~~------~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~--~~~~~~~l~~~----- 225 (606)
T 3t6q_A 161 QNNAIHYLSKEDM------SSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQN--LLVIFKGLKNS----- 225 (606)
T ss_dssp CSSCCCEECHHHH------HTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSC--HHHHHHHTTTC-----
T ss_pred ccCcccccChhhh------hhhcccceeEEecCCCccCccChhHh--hhccccccccCCchh--HHHHhhhcccc-----
Confidence 7776654333221 1233444 45555555544443332 233455555544431 00 01111111
Q ss_pred cCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccC--CcccEEeeccCcccccCCC---CCCC
Q 045303 734 SGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVF--PKLRKLSLRHCDKLQGTLP---RRLL 808 (1206)
Q Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~--~~L~~L~l~~c~~l~~~lp---~~l~ 808 (1206)
.++.+.+..+..+..... .......+ .+|+.|++++ +.+++..+ ..++
T Consensus 226 -----------------------~l~~l~~~~~~~~~~~~i---~~~~~~~l~~~~L~~L~l~~-n~l~~~~~~~~~~l~ 278 (606)
T 3t6q_A 226 -----------------------TIQSLWLGTFEDMDDEDI---SPAVFEGLCEMSVESINLQK-HYFFNISSNTFHCFS 278 (606)
T ss_dssp -----------------------EEEEEECCCCTTSCCCCC---CGGGGGGGGGSEEEEEECTT-CCCSSCCTTTTTTCT
T ss_pred -----------------------chhheechhhcccccccc---ChhHhchhhcCceeEEEeec-CccCccCHHHhcccc
Confidence 111222221111110000 00011111 2567777777 45553222 2345
Q ss_pred CccEEEEeccc--CccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhc--ccCCC
Q 045303 809 LLETLDITSCH--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIA--RIQLP 884 (1206)
Q Consensus 809 ~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~ 884 (1206)
+|++|++++|. .++..+..+++|++|++++|.+..+.. ..+..+++|+.|++++|.....++ .+..+
T Consensus 279 ~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ---------ISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG---------GCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred CCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch---------hhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 66666666665 344455666667777776665443211 122334555555555553321111 01122
Q ss_pred CCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccc--
Q 045303 885 PSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESL-- 962 (1206)
Q Consensus 885 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~-- 962 (1206)
+ +|+.|++++|......
T Consensus 350 ~-------------------------------------------------------------~L~~L~l~~n~l~~~~~~ 368 (606)
T 3t6q_A 350 E-------------------------------------------------------------NLRELDLSHDDIETSDCC 368 (606)
T ss_dssp T-------------------------------------------------------------TCCEEECCSSCCCEEEES
T ss_pred C-------------------------------------------------------------cCCEEECCCCccccccCc
Confidence 2 3333333333222111
Q ss_pred h-hhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccC-CCCCCCCccEEEeccccCccccccccCCC
Q 045303 963 A-ERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPE-EGLPSTKLTELTIWDCENLKALPNCMHNL 1040 (1206)
Q Consensus 963 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 1040 (1206)
+ .....++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+
T Consensus 369 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 448 (606)
T 3t6q_A 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448 (606)
T ss_dssp TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTC
T ss_pred chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCC
Confidence 1 112235666666666666555566666666666666666665554433 25566666666666666666666666666
Q ss_pred CccCeeeeecCCCCcc-CCC---CCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCcee-cCCCCCCCcc
Q 045303 1041 TSLLDLDIRGCPSVVS-FPE---DGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVS-LPPFPASLTG 1115 (1206)
Q Consensus 1041 ~~L~~L~L~~n~~~~~-~~~---~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~-lp~~~~~L~~ 1115 (1206)
++|++|++++|.+.+. ++. ...+++|+.|++++|.+++..|. .|..+++|++|++++ +.+.. .|..+..++.
T Consensus 449 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~--N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTSLKMMNHVDLSH--NRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCS--SCCCGGGGGGGTTCCS
T ss_pred CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-hhccccCCCEEECCC--CccCcCChhHhCcccc
Confidence 6666666666666542 111 14556666666666666654444 566666666666655 23333 2334455555
Q ss_pred eeeccCCCCccccCCC---CCcCcccccccccCCCC
Q 045303 1116 LEISDMPDLECLSSIG---ENLTSLKYLYLIDCPKL 1148 (1206)
Q Consensus 1116 L~~~~~~~~~~~~~~~---~~l~~L~~L~l~~n~~l 1148 (1206)
| ..+++++.+....+ ..+++|+.|++++||..
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 5 44444444443322 46788999999999743
No 10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.6e-35 Score=349.45 Aligned_cols=285 Identities=20% Similarity=0.249 Sum_probs=225.3
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccce-eEEEEEcCCCChHHHHHHHH
Q 045303 90 KVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQI-KGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 168 (1206)
..|||++++++|.++|.... ..++|+|+||||+||||||++++++.+++.+|+. ++|+++++.++...++..++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45999999999999997532 3689999999999999999999987778889986 89999999988888888877
Q ss_pred HhccCCC---C-C-------CCCHHHHHHHHHHHh---CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 169 ESIANVT---V-D-------DNNLNSLQVKLKERL---SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 169 ~~l~~~~---~-~-------~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
+.+.... . . ..+.+.+...+++.+ .++|+||||||||+.+ .|+.+ . +||+||||||+
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~e--qLe~f----~---pGSRILVTTRd 274 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--AWNAF----N---LSCKILLTTRF 274 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHH--HHHHH----H---SSCCEEEECSC
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHH--HHHhh----C---CCeEEEEeccC
Confidence 7543211 0 0 012344566677765 6899999999999853 55543 2 68999999999
Q ss_pred hHHHhhcCCCCceeCC------CCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCC-C
Q 045303 235 LVVAERMRADPVYQLK------KLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRD-D 307 (1206)
Q Consensus 235 ~~~~~~~~~~~~~~l~------~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~-~ 307 (1206)
+.++..+.....+.++ +|+++||++||.+.. +.. ..+...+ .|+|+||||+++|+.|+.+. .
T Consensus 275 ~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-------~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-------PQDLPRE---VLTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp SHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-------TTTHHHH---HCCCCHHHHHHHHHHHHHSCSS
T ss_pred hHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-------HHHHHHH---HhCCCHHHHHHHHHHHhCCCCC
Confidence 9887644433456666 899999999999884 221 1122333 39999999999999998774 5
Q ss_pred hhHHHHHHhhhccccCCCCchHHHHHhhcCCChhH-HHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCCCCHHHHH
Q 045303 308 PRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQL-KQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRKMEDLG 386 (1206)
Q Consensus 308 ~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~-k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~ 386 (1206)
.+.|... ....+..+|..||+.||++. |+||++||+||+++.|+.+.++..|+++| ++.+
T Consensus 344 ~eeW~~~--------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedA 404 (1221)
T 1vt4_I 344 WDNWKHV--------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDV 404 (1221)
T ss_dssp HHHHHHC--------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHH
T ss_pred HHHHhcC--------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHH
Confidence 6777653 23479999999999999999 99999999999999999999999998876 1347
Q ss_pred HHHHHHHHhCCccccccCCCCceeehHHHHHHH
Q 045303 387 REFVRELHSRSLFQQSSKGASRFVMHDLINDLA 419 (1206)
Q Consensus 387 ~~~l~~L~~~~ll~~~~~~~~~~~~H~lv~~~~ 419 (1206)
++++++|+++||++... +..+|+|||++++++
T Consensus 405 e~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 405 MVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 88999999999999842 346899999999854
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6e-33 Score=351.63 Aligned_cols=495 Identities=15% Similarity=0.084 Sum_probs=334.6
Q ss_pred CCceeEEEecCCCCcccC-CccccCccccceeeccccc-cccc-cccccccccccEEecCCCcccccccccccCCCccce
Q 045303 499 LPRLRVFSLCGYSNIFSL-PNEIGNLKHLRCLNLSRTR-IQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 575 (1206)
Q Consensus 499 ~~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~Ls~n~-i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 575 (1206)
.++|++|+|++| .+..+ |.+|.++++|++|+|++|. +..+ |..|.++++|++|+|++|......|..|+++++|++
T Consensus 23 p~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 467888999988 55554 6788889999999999885 4466 677888999999999988555555888889999999
Q ss_pred eecCCCCccccCCcc--cCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCc
Q 045303 576 LRNSNADELEEMPKG--FGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQA 653 (1206)
Q Consensus 576 L~l~~n~~~~~~p~~--~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~ 653 (1206)
|+|++|.+...+|.. ++++++|++|++..+... .......|.++++|+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~-----------------------------~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-----------------------------SLYLHPSFGKLNSLKS 152 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCC-----------------------------CCCCCGGGGTCSSCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCccc-----------------------------ccccchhHhhCCCCCE
Confidence 999988855555655 788888888855433210 0111234677778888
Q ss_pred eEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCC-CCCCcCCCCCC------CccEEEEcccCC-CCCC-CC--
Q 045303 654 LSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTK-FPSWLGDSSFS------KLARLELRLCMS-TSLP-SV-- 722 (1206)
Q Consensus 654 L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~------~L~~L~L~~~~~-~~l~-~l-- 722 (1206)
|++++|.+..........+. .++|+.|++++|.+.. .|..+. .+. +|+.|++++|.+ ...+ .+
T Consensus 153 L~Ls~N~i~~~~~~~l~~l~----~~~L~~L~L~~n~l~~~~~~~~~--~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 226 (844)
T 3j0a_A 153 IDFSSNQIFLVCEHELEPLQ----GKTLSFFSLAANSLYSRVSVDWG--KCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226 (844)
T ss_dssp EEEESSCCCCCCSGGGHHHH----HCSSCCCEECCSBSCCCCCCCCC--SSSCTTTTCCBSEEBCSSCCSSTTTTSGGGG
T ss_pred EECCCCcCCeeCHHHccccc----CCccceEECCCCccccccccchh--hcCCccccCceeEEecCCCcCchhHHHHHHh
Confidence 88888876554332222221 1577888888776653 233222 222 388888888876 2222 22
Q ss_pred -CCCCCCceeeecCCCCce---------eecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEe
Q 045303 723 -GQLPFLKELDISGMDGVV---------SVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLS 792 (1206)
Q Consensus 723 -~~l~~L~~L~L~~~~~~~---------~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 792 (1206)
-..++++.|.++.+.... .....|.+ ...++|+.|+++++... ...+ .....+++|+.|+
T Consensus 227 ~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~----l~~~~L~~L~Ls~n~l~-~~~~-----~~~~~l~~L~~L~ 296 (844)
T 3j0a_A 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG----LARSSVRHLDLSHGFVF-SLNS-----RVFETLKDLKVLN 296 (844)
T ss_dssp TSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT----TTTSCCCEEECTTCCCC-EECS-----CCSSSCCCCCEEE
T ss_pred hcCcccccceecccccccccccccccCCCChhhhhc----cccCCccEEECCCCccc-ccCh-----hhhhcCCCCCEEE
Confidence 223567777776322111 11111111 11368889998886532 2211 2445688999999
Q ss_pred eccCcccccCCC---CCCCCccEEEEecccC---ccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcce
Q 045303 793 LRHCDKLQGTLP---RRLLLLETLDITSCHQ---LLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLES 866 (1206)
Q Consensus 793 l~~c~~l~~~lp---~~l~~L~~L~l~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 866 (1206)
+++ |++++..| ..+++|++|++++|.. .+..+..+++|+.|++++|.+..+.. ..+..+++|+.
T Consensus 297 L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---------~~~~~l~~L~~ 366 (844)
T 3j0a_A 297 LAY-NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD---------QTFKFLEKLQT 366 (844)
T ss_dssp EES-CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS---------SCSCSCCCCCE
T ss_pred CCC-CcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh---------hhhcCCCCCCE
Confidence 998 67775545 4578899999999972 34568889999999999987654432 33466788999
Q ss_pred eeeccCCChhhhcccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCcc
Q 045303 867 LAIGRCDSLTYIARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQ 946 (1206)
Q Consensus 867 L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~ 946 (1206)
|++++|... ....+++|+.|.++++.- +.++ ....
T Consensus 367 L~Ls~N~l~----~i~~~~~L~~L~l~~N~l--------------------------------------~~l~---~~~~ 401 (844)
T 3j0a_A 367 LDLRDNALT----TIHFIPSIPDIFLSGNKL--------------------------------------VTLP---KINL 401 (844)
T ss_dssp EEEETCCSC----CCSSCCSCSEEEEESCCC--------------------------------------CCCC---CCCT
T ss_pred EECCCCCCC----cccCCCCcchhccCCCCc--------------------------------------cccc---cccc
Confidence 999887542 222356777777766541 1111 0123
Q ss_pred ccceEEecccCCccc--chhhcCCCCcceeeeccccCcCcccc-cccCCCccceeeccccCCc-----ccccCCCCCCCC
Q 045303 947 ALKYLGVESCSKLES--LAERLDNTSLEEITILNLENLKSLPA-GLHNLHHLQKIWIGYCPNL-----ESFPEEGLPSTK 1018 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~-----~~~~~~~~~l~~ 1018 (1206)
+++.+++++|..-.. .......++|+.|++++|.+.+..+. .+..+++|++|+|++|.+. +..+..+.++++
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~ 481 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH 481 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCC
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccc
Confidence 455666665543221 11122458899999999987754432 3556899999999999876 334456788899
Q ss_pred ccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1019 LTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1019 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+. ...++|+.|+|++|.+++..|. . +.+|+.|++++
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~~~L~~L~Ls~N~l~~~~~~-~---~~~L~~l~l~~ 556 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN-DLPANLEILDISRNQLLAPNPD-V---FVSLSVLDITH 556 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC-CCCSCCCEEEEEEECCCCCCSC-C---CSSCCEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChh-hhhccccEEECCCCcCCCCChh-H---hCCcCEEEecC
Confidence 99999999999988888899999999999999988775443 3448999999999999987776 3 45889999988
Q ss_pred C
Q 045303 1099 G 1099 (1206)
Q Consensus 1099 ~ 1099 (1206)
|
T Consensus 557 N 557 (844)
T 3j0a_A 557 N 557 (844)
T ss_dssp E
T ss_pred C
Confidence 4
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=348.51 Aligned_cols=516 Identities=16% Similarity=0.079 Sum_probs=348.1
Q ss_pred eEEEecCCCCcccCCccccCccccceeeccccccccc-cccccccccccEEecCCCcccccc-cccccCCCccceeecCC
Q 045303 503 RVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHLRNSN 580 (1206)
Q Consensus 503 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~l-p~~~~~L~~L~~L~l~~ 580 (1206)
++.+.+++ .++.+|. -.++|++|+|++|.|+.+ |..|.++++|++|+|++|.....+ |..|+++++|++|+|++
T Consensus 7 ~~~dcs~~-~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFC-NLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCC-CSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCC-CCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 56788888 8999997 458999999999999965 778999999999999999777777 77899999999999999
Q ss_pred CCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCccc--ccccccCCCCCCCceEEee
Q 045303 581 ADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGD--ASEAQLNNKVNLQALSLEW 658 (1206)
Q Consensus 581 n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~ 658 (1206)
|.+....|..|+++++|++|++..+.. .. .....+.++++|+.|++++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l------------------------------~~~~~~~~~~~~L~~L~~L~Ls~ 132 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGL------------------------------SDAVLKDGYFRNLKALTRLDLSK 132 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCC------------------------------SSCCSTTCCCSSCSSCCEEEEES
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCC------------------------------CcccccCccccccCCCCEEECCC
Confidence 996556688899999999996543221 11 1123378889999999999
Q ss_pred cCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCC-CCCcCCCCC--CCccEEEEcccCC-CCCC-CCCCCCC------
Q 045303 659 SARSERCEFEADVLRMLKPHRDVQELTITGYGGTKF-PSWLGDSSF--SKLARLELRLCMS-TSLP-SVGQLPF------ 727 (1206)
Q Consensus 659 n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~--~~L~~L~L~~~~~-~~l~-~l~~l~~------ 727 (1206)
|.+..... ...+..+++|+.|++++|.+..+ |..+. .+ ++|+.|++++|.+ ...+ .++.+++
T Consensus 133 N~l~~~~~-----~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~--~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 133 NQIRSLYL-----HPSFGKLNSLKSIDFSSNQIFLVCEHELE--PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CCCCCCCC-----CGGGGTCSSCCEEEEESSCCCCCCSGGGH--HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred Cccccccc-----chhHhhCCCCCEEECCCCcCCeeCHHHcc--cccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 98764321 12456688999999999987654 34443 33 7899999999988 3333 4555554
Q ss_pred CceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCC---Ccccc--cCCcccEEeeccCcccccC
Q 045303 728 LKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAG---QEVDE--VFPKLRKLSLRHCDKLQGT 802 (1206)
Q Consensus 728 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~--~~~~L~~L~l~~c~~l~~~ 802 (1206)
|+.|++++|.........+... ...++++.|.+..+..-..+...... ..... ..++|+.|++++ +.+.+.
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~---l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~-n~l~~~ 281 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNA---ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSH-GFVFSL 281 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGT---SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTT-CCCCEE
T ss_pred eeEEecCCCcCchhHHHHHHhh---cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCC-Cccccc
Confidence 9999999987554444433321 11346667766532111110000000 00111 136788888887 566544
Q ss_pred CC---CCCCCccEEEEecccC---ccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChh
Q 045303 803 LP---RRLLLLETLDITSCHQ---LLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLT 876 (1206)
Q Consensus 803 lp---~~l~~L~~L~l~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 876 (1206)
.| ..+++|+.|++++|.. .+..+..+++|++|++++|.+..+.. ..+..+++|+.|++++|.. .
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~i-~ 351 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS---------SNFYGLPKVAYIDLQKNHI-A 351 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS---------CSCSSCTTCCEEECCSCCC-C
T ss_pred ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH---------HHhcCCCCCCEEECCCCCC-C
Confidence 34 3456777777777762 23346677777777777776544322 2234556677777776643 2
Q ss_pred hhc--ccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEec
Q 045303 877 YIA--RIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVE 954 (1206)
Q Consensus 877 ~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 954 (1206)
.+. .+..+++|+.|++++|. ++.++ ..++|+.|+++
T Consensus 352 ~~~~~~~~~l~~L~~L~Ls~N~--------------------------------------l~~i~----~~~~L~~L~l~ 389 (844)
T 3j0a_A 352 IIQDQTFKFLEKLQTLDLRDNA--------------------------------------LTTIH----FIPSIPDIFLS 389 (844)
T ss_dssp CCCSSCSCSCCCCCEEEEETCC--------------------------------------SCCCS----SCCSCSEEEEE
T ss_pred ccChhhhcCCCCCCEEECCCCC--------------------------------------CCccc----CCCCcchhccC
Confidence 221 23334455555554432 22111 13478888888
Q ss_pred ccCCcccchhhcCCCCcceeeeccccCcCcc-cccccCCCccceeeccccCCcccccC-CCCCCCCccEEEeccccCc--
Q 045303 955 SCSKLESLAERLDNTSLEEITILNLENLKSL-PAGLHNLHHLQKIWIGYCPNLESFPE-EGLPSTKLTELTIWDCENL-- 1030 (1206)
Q Consensus 955 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~-- 1030 (1206)
+|... .++.. ..+++.|++++|.+.+.- +..+.++++|++|+|++|.+.+..+. .+..+++|+.|+|++|.+.
T Consensus 390 ~N~l~-~l~~~--~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 390 GNKLV-TLPKI--NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp SCCCC-CCCCC--CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred CCCcc-ccccc--ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 87654 33332 367889999988876532 23355789999999999987754433 3555789999999999876
Q ss_pred ---cccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceec
Q 045303 1031 ---KALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSL 1106 (1206)
Q Consensus 1031 ---~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~l 1106 (1206)
+..+..|.++++|++|+|++|.+.+..+.. ..+++|+.|+|++|++++..+. .+. ++|+.|++++ |.+..+
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-~~~--~~L~~L~Ls~--N~l~~~ 541 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN-DLP--ANLEILDISR--NQLLAP 541 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCC-CCC--SCCCEEEEEE--ECCCCC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChh-hhh--ccccEEECCC--CcCCCC
Confidence 334566888999999999999888776665 7789999999999999864444 444 8899999987 444444
Q ss_pred -CCCCCCCcceeeccCCC
Q 045303 1107 -PPFPASLTGLEISDMPD 1123 (1206)
Q Consensus 1107 -p~~~~~L~~L~~~~~~~ 1123 (1206)
|..+.+|+.|++.+++-
T Consensus 542 ~~~~~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 542 NPDVFVSLSVLDITHNKF 559 (844)
T ss_dssp CSCCCSSCCEEEEEEECC
T ss_pred ChhHhCCcCEEEecCCCc
Confidence 44677788887776653
No 13
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-33 Score=376.66 Aligned_cols=312 Identities=21% Similarity=0.311 Sum_probs=246.9
Q ss_pred ccCCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc-cccc-ceeEEEEEcCCCC-
Q 045303 83 TSLVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHF-QIKGWTCVSDDFD- 159 (1206)
Q Consensus 83 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~- 159 (1206)
..|..+..||||++++++|.++|.... ++.++|+|+||||+||||||+++|++.+. ..+| +.++|+.+++..+
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 345566789999999999999997543 36789999999999999999999986543 4445 5677999988543
Q ss_pred -hHHHHHHHHHhccCCC----CCCCCHHHHHHHHHHHhCCC--ceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc
Q 045303 160 -VPRVTKSILESIANVT----VDDNNLNSLQVKLKERLSGK--KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT 232 (1206)
Q Consensus 160 -~~~~~~~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~~--~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt 232 (1206)
....+..++..+.... ....+.+.+...++..+.++ |+||||||||+.. .|.. ..+|++|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~-------~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKA-------FDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTT-------TCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHh-------hcCCCEEEEEc
Confidence 3344666666665432 23456788889999999877 9999999999753 3332 25789999999
Q ss_pred cchHHHhh-cCCCCceeCCC-CChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCChhH
Q 045303 233 RNLVVAER-MRADPVYQLKK-LSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRD 310 (1206)
Q Consensus 233 r~~~~~~~-~~~~~~~~l~~-l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~ 310 (1206)
|++.++.. ......+++++ |+++||++||...++.. .+...+.+++|+++|+|+||||+++|++|+.+. ..
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hH
Confidence 99988854 45567889996 99999999999887432 233456789999999999999999999998764 45
Q ss_pred HHHHHhhhcccc----CC------CCchHHHHHhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCCC
Q 045303 311 WEFVLKNDIWNL----RD------SDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGR 380 (1206)
Q Consensus 311 w~~~~~~~~~~~----~~------~~v~~~l~~s~~~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~ 380 (1206)
|...++...... .. ..+..+|.+||+.|++++|.||++||+||+++.|+.+.++..|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------
Confidence 776665432211 11 1589999999999999999999999999999999999999999553
Q ss_pred CHHHHHHHHHHHHHhCCccccccCC-CCceeehHHHHHHHHHhhccc
Q 045303 381 KMEDLGREFVRELHSRSLFQQSSKG-ASRFVMHDLINDLARWAAGEL 426 (1206)
Q Consensus 381 ~~~~~~~~~l~~L~~~~ll~~~~~~-~~~~~~H~lv~~~~~~~~~~~ 426 (1206)
++.+++++++|+++||++....+ ..+|+||+++|+|+++++.++
T Consensus 408 --~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 --TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred --HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 36688999999999999876544 346999999999999987765
No 14
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=334.93 Aligned_cols=307 Identities=23% Similarity=0.359 Sum_probs=234.2
Q ss_pred cCCCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc-ccccc-eeEEEEEcCCCChH
Q 045303 84 SLVTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHFQ-IKGWTCVSDDFDVP 161 (1206)
Q Consensus 84 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~-~~~f~-~~~wv~~~~~~~~~ 161 (1206)
.|..+..||||++++++|.++|.... ++.++|+|+|+||+||||||++++++.+. ..+|. .++|++++.. +..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chH
Confidence 34556789999999999999997532 35789999999999999999999987555 67884 7999999875 333
Q ss_pred HHHHHH---HHhccCC----CCCCCCHHHHHHHHHHHhCC--CceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEc
Q 045303 162 RVTKSI---LESIANV----TVDDNNLNSLQVKLKERLSG--KKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTT 232 (1206)
Q Consensus 162 ~~~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTt 232 (1206)
.++..+ +..++.. .....+.+.....++..+.+ +++||||||+|+... +. .+ .++++|||||
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~--l~----~l---~~~~~ilvTs 264 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWV--LK----AF---DSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHH--HH----TT---CSSCEEEEEE
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHH--HH----Hh---cCCCeEEEEC
Confidence 344433 3344321 12345667778888888866 789999999987542 22 22 4689999999
Q ss_pred cchHHHhhcCCCCceeC---CCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhhCCCCChh
Q 045303 233 RNLVVAERMRADPVYQL---KKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPR 309 (1206)
Q Consensus 233 r~~~~~~~~~~~~~~~l---~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~ 309 (1206)
|+..++..+.. ..+++ ++|+++||+++|...++.. .....+.+.+|+++|+|+||||+.+|+.++... .
T Consensus 265 R~~~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~ 336 (591)
T 1z6t_A 265 RDKSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--N 336 (591)
T ss_dssp SCGGGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--T
T ss_pred CCcHHHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--h
Confidence 99887765432 33443 6899999999999987532 122346788999999999999999999998753 4
Q ss_pred HHHHHHhhhcccc----C------CCCchHHHHHhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCC
Q 045303 310 DWEFVLKNDIWNL----R------DSDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSG 379 (1206)
Q Consensus 310 ~w~~~~~~~~~~~----~------~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~ 379 (1206)
.|...+....... . ...+..++..||+.||++.|.||+++|+||+++.|+.+.+...|.++
T Consensus 337 ~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~--------- 407 (591)
T 1z6t_A 337 RWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME--------- 407 (591)
T ss_dssp CHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC---------
T ss_pred hHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC---------
Confidence 6776665432111 1 12688999999999999999999999999999999999999998542
Q ss_pred CCHHHHHHHHHHHHHhCCccccccCC-CCceeehHHHHHHHHHhhc
Q 045303 380 RKMEDLGREFVRELHSRSLFQQSSKG-ASRFVMHDLINDLARWAAG 424 (1206)
Q Consensus 380 ~~~~~~~~~~l~~L~~~~ll~~~~~~-~~~~~~H~lv~~~~~~~~~ 424 (1206)
.+.+++++++|+++||++....+ ..+|+||+++|++++....
T Consensus 408 ---~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 ---TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ---HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred ---HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 24578899999999999865433 3479999999999998843
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=331.44 Aligned_cols=480 Identities=17% Similarity=0.112 Sum_probs=261.1
Q ss_pred CceeEEEecCCCCcccCC-ccccCccccceeecccccccccc-ccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 500 PRLRVFSLCGYSNIFSLP-NEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
+.+++|+|++| .+..++ .+|.++++|++|+|++|.++.++ ..|.++++|++|+|++|......|..|+++++|++|+
T Consensus 28 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 46788888888 565554 56788888888888888887664 4577888888888888843333446678888888888
Q ss_pred cCCCCccccCCc-ccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCccc-ccccccCCCCCCCceE
Q 045303 578 NSNADELEEMPK-GFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGD-ASEAQLNNKVNLQALS 655 (1206)
Q Consensus 578 l~~n~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~-~~~~~l~~l~~L~~L~ 655 (1206)
+++|. +..+|. .++++++|++|++..+. +.. ..+..+.++++|+.|+
T Consensus 107 L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~------------------------------l~~~~lp~~~~~l~~L~~L~ 155 (570)
T 2z63_A 107 AVETN-LASLENFPIGHLKTLKELNVAHNL------------------------------IQSFKLPEYFSNLTNLEHLD 155 (570)
T ss_dssp CTTSC-CCCSTTCSCTTCTTCCEEECCSSC------------------------------CCCCCCCGGGGGCTTCCEEE
T ss_pred ccccc-cccCCCccccccccccEEecCCCc------------------------------cceecChhhhcccCCCCEEe
Confidence 88887 555554 47777777777443221 001 1234466677788888
Q ss_pred EeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCC--CCC-CCCCCCCCceee
Q 045303 656 LEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMST--SLP-SVGQLPFLKELD 732 (1206)
Q Consensus 656 l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~--~l~-~l~~l~~L~~L~ 732 (1206)
+++|.+..........+..+. .....+++++|.+..++...+ ...+|+.|++++|... .++ .++.+++++.+.
T Consensus 156 l~~n~l~~~~~~~~~~l~~L~--~~~~~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~ 231 (570)
T 2z63_A 156 LSSNKIQSIYCTDLRVLHQMP--LLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231 (570)
T ss_dssp CTTSCCCEECGGGGHHHHTCT--TCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEE
T ss_pred CcCCccceecHHHccchhccc--hhhhhcccCCCCceecCHHHh--ccCcceeEecccccccccchhhhhcCccccceee
Confidence 877776554332222222110 011567777777666554443 2336778887776441 122 244555555544
Q ss_pred ecCCCC-----ceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCC--
Q 045303 733 ISGMDG-----VVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPR-- 805 (1206)
Q Consensus 733 L~~~~~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-- 805 (1206)
+..... ...+... .|..+.. ..++.+++.++..+.+.+|.
T Consensus 232 l~~~~~~~~~~l~~~~~~--------~~~~l~~-------------------------l~l~~l~l~~~~~~~~~~~~~~ 278 (570)
T 2z63_A 232 LVLGEFRNEGNLEKFDKS--------ALEGLCN-------------------------LTIEEFRLAYLDYYLDDIIDLF 278 (570)
T ss_dssp EEEEECCCCSSCEECCTT--------TTGGGGG-------------------------SEEEEEEEEETTEEESCSTTTT
T ss_pred eccccccCchhhhhcchh--------hhccccc-------------------------cchhhhhhhcchhhhhhchhhh
Confidence 432110 0000000 0111100 01233333332223322221
Q ss_pred -CCCCccEEEEeccc--CccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccC
Q 045303 806 -RLLLLETLDITSCH--QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQ 882 (1206)
Q Consensus 806 -~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 882 (1206)
.+++|+.|++++|. .++..+..+ +|+.|++++|....+.. ..+++|+.|++++|.....+.. .
T Consensus 279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~------------~~l~~L~~L~l~~n~~~~~~~~-~ 344 (570)
T 2z63_A 279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT------------LKLKSLKRLTFTSNKGGNAFSE-V 344 (570)
T ss_dssp GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCB------------CBCSSCCEEEEESCBSCCBCCC-C
T ss_pred cCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCc------------ccccccCEEeCcCCcccccccc-c
Confidence 22334444444433 222223333 44444444443222111 1223344444444332211111 2
Q ss_pred CCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccc
Q 045303 883 LPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESL 962 (1206)
Q Consensus 883 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~ 962 (1206)
.+++|+.|++++|.. .... ..+......++|+.|++++|......
T Consensus 345 ~~~~L~~L~l~~n~l---------------------------~~~~--------~~~~~~~~~~~L~~L~l~~n~l~~~~ 389 (570)
T 2z63_A 345 DLPSLEFLDLSRNGL---------------------------SFKG--------CCSQSDFGTTSLKYLDLSFNGVITMS 389 (570)
T ss_dssp BCTTCCEEECCSSCC---------------------------BEEE--------EEEHHHHTCSCCCEEECCSCSEEEEE
T ss_pred cCCCCCEEeCcCCcc---------------------------Cccc--------cccccccccCccCEEECCCCcccccc
Confidence 233333333333220 0000 00000011235566666665443333
Q ss_pred hhhcCCCCcceeeeccccCcCccc-ccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCc-cccccccCCC
Q 045303 963 AERLDNTSLEEITILNLENLKSLP-AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENL-KALPNCMHNL 1040 (1206)
Q Consensus 963 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l 1040 (1206)
+.....++|+.|++++|.+.+..+ ..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+
T Consensus 390 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp EEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred ccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 333344677777777777666554 45677777888888887777777777777778888888877776 4567777777
Q ss_pred CccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1041 TSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1041 ~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
++|++|++++|.+.+..|.. ..+++|+.|++++|.+++..|. .|..+++|+.|++++
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG-IFDRLTSLQKIWLHT 527 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCS
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH-HhhcccCCcEEEecC
Confidence 88888888888777665544 6677788888888777755443 677777777777765
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.4e-32 Score=329.15 Aligned_cols=190 Identities=18% Similarity=0.124 Sum_probs=119.9
Q ss_pred ccceEEecccCCcccchhhc--CCCCcceeeeccccCcCccc---ccccCCCccceeeccccCCccccc--CCCCCCCCc
Q 045303 947 ALKYLGVESCSKLESLAERL--DNTSLEEITILNLENLKSLP---AGLHNLHHLQKIWIGYCPNLESFP--EEGLPSTKL 1019 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L 1019 (1206)
+++.|++++|. +..+|..+ ..++|++|++++|.+.+.+| ..+..+++|++|+|++|.+.+..+ ..+..+++|
T Consensus 311 ~L~~L~l~~n~-l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 311 KVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TCCEEEEESSC-CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred cceEEEeccCc-cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 56666666654 33444333 24777777777777766553 335677788888888876654322 345667778
Q ss_pred cEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecC
Q 045303 1020 TELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGG 1099 (1206)
Q Consensus 1020 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~ 1099 (1206)
++|++++|.+. .+|..+..+++|++|++++|.+.. +|. ..+++|++|++++|.+++.+ ..+++|++|++++
T Consensus 390 ~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~-~~~~~L~~L~Ls~N~l~~~~-----~~l~~L~~L~Ls~- 460 (549)
T 2z81_A 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKT-CIPQTLEVLDVSNNNLDSFS-----LFLPRLQELYISR- 460 (549)
T ss_dssp CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCT-TSCTTCSEEECCSSCCSCCC-----CCCTTCCEEECCS-
T ss_pred CEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccc-hhcCCceEEECCCCChhhhc-----ccCChhcEEECCC-
Confidence 88888877666 467777777788888888887654 222 23467888888888776532 3577777777765
Q ss_pred CCCceecCCCCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCCC--CccccceecccCChh
Q 045303 1100 CPDLVSLPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQG--LPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1100 ~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~--~~~~L~~L~l~~c~~ 1170 (1206)
+.++.+|.. ..+++|+.|++++| .++.++... .+++|+.|++++||.
T Consensus 461 -N~l~~ip~~----------------------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 461 -NKLKTLPDA----------------------SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp -SCCSSCCCG----------------------GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred -CccCcCCCc----------------------ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCCc
Confidence 345555531 23566777777776 455555432 256677777776653
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.8e-32 Score=333.13 Aligned_cols=207 Identities=18% Similarity=0.154 Sum_probs=143.2
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeec-cccccccc-ccc-----------------------------------
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNL-SRTRIQIL-PES----------------------------------- 542 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L-s~n~i~~l-p~~----------------------------------- 542 (1206)
..++.|+|++|.....+|.+|++|++|++|+| ++|.+... |-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57888999998555688888999999999999 77765411 100
Q ss_pred --------------c--cccccccEEecCC--CcccccccccccCCCccceeecCCCCccc-----------------cC
Q 045303 543 --------------I--NSLYNLHTILLED--CWKLKKLCKDMGNLTKLRHLRNSNADELE-----------------EM 587 (1206)
Q Consensus 543 --------------~--~~L~~L~~L~L~~--n~~~~~lp~~~~~L~~L~~L~l~~n~~~~-----------------~~ 587 (1206)
+ .....++.+.+.. | .+..+|..|+++++|++|+|++|.+.. .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccC-cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 1112233333332 4 444588889999999999999998444 28
Q ss_pred CcccC--CcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecC-CCc-
Q 045303 588 PKGFG--KLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSA-RSE- 663 (1206)
Q Consensus 588 p~~~~--~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~- 663 (1206)
|..++ ++++|+.|++..+. .....+..+.++++|+.|++++|. +..
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~------------------------------l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~ 531 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCP------------------------------NMTQLPDFLYDLPELQSLNIACNRGISAA 531 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCT------------------------------TCCSCCGGGGGCSSCCEEECTTCTTSCHH
T ss_pred ChhhhhccCCCCCEEECcCCC------------------------------CCccChHHHhCCCCCCEEECcCCCCcccc
Confidence 88877 88888888543321 112234567788899999999987 654
Q ss_pred chhhHHHHhh-cCCCCCCccEEEEEecCCCCCCC--CcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCCCc
Q 045303 664 RCEFEADVLR-MLKPHRDVQELTITGYGGTKFPS--WLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMDGV 739 (1206)
Q Consensus 664 ~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~~ 739 (1206)
..+.....+. .+..+++|+.|++++|.+..+|. .+. .+++|+.|++++|.+..+|.++.+++|+.|++++|...
T Consensus 532 ~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~--~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ--KMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp HHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT--TCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS
T ss_pred cchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh--cCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc
Confidence 3333333333 55667788888888888888887 665 67888888888888877777778888888888777643
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=9.5e-32 Score=326.22 Aligned_cols=449 Identities=17% Similarity=0.118 Sum_probs=277.4
Q ss_pred CceeEEEecCCCCcccC-CccccCccccceeecccccccccc-ccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 500 PRLRVFSLCGYSNIFSL-PNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
+.|++|+|++| .+..+ |..|.++++|++|++++|.++.+| ..|.++++|++|++++|......|..|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 68999999999 66655 578999999999999999998665 6789999999999999944444444589999999999
Q ss_pred cCCCCccc-cCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEE
Q 045303 578 NSNADELE-EMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSL 656 (1206)
Q Consensus 578 l~~n~~~~-~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l 656 (1206)
+++|.+.. .+|..++++++|++|++..+.. ........+.++++|++|++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~-----------------------------~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVET-----------------------------FSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSS-----------------------------CCEECTTTTTTCCEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCcc-----------------------------ccccCHhhhhcccccCeeec
Confidence 99998332 3466788888888885544321 11222334666777888888
Q ss_pred eecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCC-----CCCCCCCCCcee
Q 045303 657 EWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSL-----PSVGQLPFLKEL 731 (1206)
Q Consensus 657 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l-----~~l~~l~~L~~L 731 (1206)
++|.+.... ...+..+++|+.|+++++....+|.++.. .+++|+.|++++|.+..+ +....+++|+.|
T Consensus 156 ~~n~l~~~~------~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L 228 (549)
T 2z81_A 156 KALSLRNYQ------SQSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228 (549)
T ss_dssp EETTCCEEC------TTTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEE
T ss_pred cCCcccccC------hhhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhcccce
Confidence 877765422 23445566777777777766666655432 467777777777777432 223456667777
Q ss_pred eecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCccccc---------C
Q 045303 732 DISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQG---------T 802 (1206)
Q Consensus 732 ~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~---------~ 802 (1206)
++++|.........+.. ....+++|+.+++++| .+.+ .
T Consensus 229 ~l~~n~l~~~~~~~l~~--------------------------------~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 229 AFRGSVLTDESFNELLK--------------------------------LLRYILELSEVEFDDC-TLNGLGDFNPSESD 275 (549)
T ss_dssp EEESCEEEHHHHHHHHG--------------------------------GGGGCTTCCEEEEESC-EEECCSCCCCCTTT
T ss_pred eccccccchhHHHHHHH--------------------------------Hhhhhccccccccccc-cccccccccccchh
Confidence 77665432211111100 1112345555555553 2221 1
Q ss_pred CCCCCCCccEEEEecccCcc--------ccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCC
Q 045303 803 LPRRLLLLETLDITSCHQLL--------VTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDS 874 (1206)
Q Consensus 803 lp~~l~~L~~L~l~~~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 874 (1206)
.+..+++|+.|.+.++.... ..+...++|+.|++++|.+..+ |...+..+++|+.|++++|..
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~i---------p~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV---------PCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCC---------CHHHHHHCTTCCEEECCSSCC
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccC---------CHHHHhcCccccEEEccCCcc
Confidence 11334555555555543111 0112234566666666543322 222223345555555555543
Q ss_pred hhhhc----ccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccce
Q 045303 875 LTYIA----RIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKY 950 (1206)
Q Consensus 875 l~~~~----~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~ 950 (1206)
...++ ....+ ++|+.
T Consensus 347 ~~~~~~~~~~~~~l-------------------------------------------------------------~~L~~ 365 (549)
T 2z81_A 347 VEEYLKNSACKGAW-------------------------------------------------------------PSLQT 365 (549)
T ss_dssp CHHHHHHHTCTTSS-------------------------------------------------------------TTCCE
T ss_pred ccccccchhhhhcc-------------------------------------------------------------ccCcE
Confidence 22210 01111 24444
Q ss_pred EEecccCCcccc---hhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccc
Q 045303 951 LGVESCSKLESL---AERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDC 1027 (1206)
Q Consensus 951 L~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1027 (1206)
|++++|...... ......++|++|++++|.+. .+|..+..+++|++|++++|.+. .++..+. ++|++|+|++|
T Consensus 366 L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~~L~Ls~N 441 (549)
T 2z81_A 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNN 441 (549)
T ss_dssp EECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTCSEEECCSS
T ss_pred EEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCceEEECCCC
Confidence 444444322111 01223477888888888665 67777888888888998888654 3443332 58888888888
Q ss_pred cCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1028 ENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1028 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
.+.+.. ..+++|++|+|++|.+. .+|....+++|+.|+|++|++++..|. .+..+++|+.|++++
T Consensus 442 ~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 442 NLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKSVPDG-IFDRLTSLQKIWLHT 506 (549)
T ss_dssp CCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCCCCTT-GGGGCTTCCEEECCS
T ss_pred Chhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCCcCHH-HHhcCcccCEEEecC
Confidence 877642 47888888899888876 466566788888888888888865554 678888888888876
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.9e-32 Score=331.07 Aligned_cols=149 Identities=19% Similarity=0.129 Sum_probs=107.1
Q ss_pred ccccccccccCCCccceeecCCCCcccc-----------------CCcccC--CcCccccCCceEeCCCCCCCcccccCc
Q 045303 559 KLKKLCKDMGNLTKLRHLRNSNADELEE-----------------MPKGFG--KLTCLLTLGRFVVGKDSGSGLRELKSL 619 (1206)
Q Consensus 559 ~~~~lp~~~~~L~~L~~L~l~~n~~~~~-----------------~p~~~~--~l~~L~~L~~~~~~~~~~~~~~~l~~L 619 (1206)
.+..+|..|+++++|++|++++|.+... +|..++ ++++|++|++..+.
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~------------- 260 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP------------- 260 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-------------
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-------------
Confidence 4444888888999999999998884332 888888 88888888544322
Q ss_pred ccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecC-CCc-chhhHHHHhhcCCCCCCccEEEEEecCCCCCCC-
Q 045303 620 THLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSA-RSE-RCEFEADVLRMLKPHRDVQELTITGYGGTKFPS- 696 (1206)
Q Consensus 620 ~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~- 696 (1206)
.....+..+.++++|+.|++++|. +.. ..+.....+..+..+++|+.|++++|.+..+|.
T Consensus 261 -----------------l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~ 323 (636)
T 4eco_A 261 -----------------NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323 (636)
T ss_dssp -----------------TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH
T ss_pred -----------------CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch
Confidence 112234557788889999999887 654 333333333334445788888888888888887
Q ss_pred -CcCCCCCCCccEEEEcccCCC-CCCCCCCCCCCceeeecCCCCc
Q 045303 697 -WLGDSSFSKLARLELRLCMST-SLPSVGQLPFLKELDISGMDGV 739 (1206)
Q Consensus 697 -~~~~~~~~~L~~L~L~~~~~~-~l~~l~~l~~L~~L~L~~~~~~ 739 (1206)
.+. .+++|+.|++++|.+. .+|.++.+++|+.|++++|...
T Consensus 324 ~~l~--~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~ 366 (636)
T 4eco_A 324 TSLQ--KMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT 366 (636)
T ss_dssp HHHT--TCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE
T ss_pred hhhc--cCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc
Confidence 665 6788888888888885 7777778888888888877644
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=2.8e-31 Score=324.06 Aligned_cols=94 Identities=19% Similarity=0.248 Sum_probs=71.2
Q ss_pred eEEEecCCCCcccCCccccCccccceeecccccccccc-ccccccccccEEecCCCcccccccccccCCCccceeecCCC
Q 045303 503 RVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNA 581 (1206)
Q Consensus 503 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n 581 (1206)
++.+.++. .+..+|..+. .++++|++++|.++.++ ..|.++++|++|+|++|......|..|+++++|++|++++|
T Consensus 10 ~~~~c~~~-~l~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMEL-NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSS-CCSSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCC-CccccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 45666665 7888997665 68999999999999765 47899999999999999444444567899999999999999
Q ss_pred CccccCC-cccCCcCccccC
Q 045303 582 DELEEMP-KGFGKLTCLLTL 600 (1206)
Q Consensus 582 ~~~~~~p-~~~~~l~~L~~L 600 (1206)
. +..+| ..|+++++|++|
T Consensus 87 ~-l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 87 P-IQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp C-CCEECTTTTTTCTTCCEE
T ss_pred c-CCccCHhhhcCccccccc
Confidence 8 44333 445555555444
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=4.8e-31 Score=317.22 Aligned_cols=456 Identities=16% Similarity=0.114 Sum_probs=279.6
Q ss_pred eEEEecCCCCcccCCccccCccccceeecccccccccc-ccccccccccEEecCCCcccccccccccCCCccceeecCCC
Q 045303 503 RVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNA 581 (1206)
Q Consensus 503 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n 581 (1206)
++|++++| .+..+|..+. ++|++|++++|.|+.+| ..|.++++|++|+|++|......|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57889998 7888887776 88999999999988765 57888999999999999544445778899999999999998
Q ss_pred CccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCccc-ccccccCCCCCCCceEEeecC
Q 045303 582 DELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGD-ASEAQLNNKVNLQALSLEWSA 660 (1206)
Q Consensus 582 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~-~~~~~l~~l~~L~~L~l~~n~ 660 (1206)
. +..+|.. .+++|++|++..+. +.. ..+..++.+++|+.|++++|.
T Consensus 80 ~-l~~lp~~--~l~~L~~L~L~~N~------------------------------l~~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 80 K-LVKISCH--PTVNLKHLDLSFNA------------------------------FDALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp C-CCEEECC--CCCCCSEEECCSSC------------------------------CSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred c-eeecCcc--ccCCccEEeccCCc------------------------------cccccchhhhccCCcceEEEecCcc
Confidence 8 6677766 67777777543321 111 123457778889999999888
Q ss_pred CCcchhhHHHHhhcCCCCCCc--cEEEEEecCC---CCCCCCcCCCCCC-CccEEEEcccCC-CCCC--CCCCCCCCcee
Q 045303 661 RSERCEFEADVLRMLKPHRDV--QELTITGYGG---TKFPSWLGDSSFS-KLARLELRLCMS-TSLP--SVGQLPFLKEL 731 (1206)
Q Consensus 661 ~~~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~~~-~L~~L~L~~~~~-~~l~--~l~~l~~L~~L 731 (1206)
+... .+..+++| +.|++++|.+ ...|.++. .+. +...+++++|.+ ..++ .+..+++|+.|
T Consensus 127 l~~~---------~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~--~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L 195 (520)
T 2z7x_B 127 LEKS---------SVLPIAHLNISKVLLVLGETYGEKEDPEGLQ--DFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195 (520)
T ss_dssp CCGG---------GGGGGTTSCEEEEEEEECTTTTSSCCTTTTT--TCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEEC
T ss_pred cchh---------hccccccceeeEEEeeccccccccccccccc--ccccceEEEEeccCcchhhhhhhhhhcccceeec
Confidence 7541 12224455 8899988876 24455543 222 233556666666 3333 46677888888
Q ss_pred eecCCCC-------ceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCC
Q 045303 732 DISGMDG-------VVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLP 804 (1206)
Q Consensus 732 ~L~~~~~-------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp 804 (1206)
++++|.. ....+ .+.. +++|+.|++.++..-...... . ......++|++|++++ ++++|.+|
T Consensus 196 ~l~~n~~~~~~~~~~~~~~-~l~~------l~~L~~L~l~~~~l~~~~~~~-~--~~~~~~~~L~~L~l~~-n~l~~~~p 264 (520)
T 2z7x_B 196 NIKCVLEDNKCSYFLSILA-KLQT------NPKLSNLTLNNIETTWNSFIR-I--LQLVWHTTVWYFSISN-VKLQGQLD 264 (520)
T ss_dssp CEEECCSTTTTHHHHHHHH-GGGG------CTTCCEEEEEEEEEEHHHHHH-H--HHHHHTSSCSEEEEEE-EEEESCCC
T ss_pred cccccccccccceeecchh-hhcc------ccchhhccccccccCHHHHHH-H--HHHhhhCcccEEEeec-ccccCccc
Confidence 8877641 11111 1111 344444444433211000000 0 0000022344444444 23333333
Q ss_pred CCCCCccEEEEecccCccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCC
Q 045303 805 RRLLLLETLDITSCHQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLP 884 (1206)
Q Consensus 805 ~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 884 (1206)
..+... ....+++|+.+++++|.. .+....+...+ ..
T Consensus 265 ~~~~~~-------------~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~-----------------------------~~ 301 (520)
T 2z7x_B 265 FRDFDY-------------SGTSLKALSIHQVVSDVF-GFPQSYIYEIF-----------------------------SN 301 (520)
T ss_dssp CCCCCC-------------CSCCCCEEEEEEEEECCC-CSCTHHHHHHH-----------------------------HT
T ss_pred cchhhc-------------ccccCceeEeccccccce-ecchhhhhccc-----------------------------cc
Confidence 211000 003344444444444432 11100000000 00
Q ss_pred CCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchh
Q 045303 885 PSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAE 964 (1206)
Q Consensus 885 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~ 964 (1206)
.+++.|+ +++|..... +.
T Consensus 302 ~~L~~L~-------------------------------------------------------------l~~n~l~~~-~~ 319 (520)
T 2z7x_B 302 MNIKNFT-------------------------------------------------------------VSGTRMVHM-LC 319 (520)
T ss_dssp CCCSEEE-------------------------------------------------------------EESSCCCCC-CC
T ss_pred CceeEEE-------------------------------------------------------------cCCCccccc-cc
Confidence 1122222 222211100 00
Q ss_pred hcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcc--cccCCCCCCCCccEEEeccccCcccccc-ccCCCC
Q 045303 965 RLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLE--SFPEEGLPSTKLTELTIWDCENLKALPN-CMHNLT 1041 (1206)
Q Consensus 965 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~ 1041 (1206)
....++|++|++++|.+.+.+|..+.++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..++
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 0123677888888888888788888899999999999998776 5566778889999999999998885665 478889
Q ss_pred ccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccC
Q 045303 1042 SLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDM 1121 (1206)
Q Consensus 1042 ~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~ 1121 (1206)
+|++|++++|.+.+.+|.. .+++|+.|++++|+++ .+|.. +..+++|++|++++ +.++.+|..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~-l~~~L~~L~Ls~N~l~-~ip~~-~~~l~~L~~L~L~~--N~l~~l~~~------------ 462 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRC-LPPRIKVLDLHSNKIK-SIPKQ-VVKLEALQELNVAS--NQLKSVPDG------------ 462 (520)
T ss_dssp TCCEEECCSSCCCGGGGGS-CCTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCS--SCCCCCCTT------------
T ss_pred cCCEEECcCCCCCcchhhh-hcccCCEEECCCCccc-ccchh-hhcCCCCCEEECCC--CcCCccCHH------------
Confidence 9999999999887766543 2378999999999998 67763 44899999999976 456666642
Q ss_pred CCCccccCCCCCcCcccccccccCC
Q 045303 1122 PDLECLSSIGENLTSLKYLYLIDCP 1146 (1206)
Q Consensus 1122 ~~~~~~~~~~~~l~~L~~L~l~~n~ 1146 (1206)
.+..+++|+.|++++|+
T Consensus 463 --------~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 463 --------IFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp --------TTTTCTTCCEEECCSSC
T ss_pred --------HhccCCcccEEECcCCC
Confidence 12356788888888885
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=2.7e-30 Score=320.68 Aligned_cols=509 Identities=17% Similarity=0.072 Sum_probs=274.8
Q ss_pred CceeEEEecCCCCcccCC-ccccCccccceeeccccccccccc-cccccccccEEecCCCcccccccc-cccCCCcccee
Q 045303 500 PRLRVFSLCGYSNIFSLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCK-DMGNLTKLRHL 576 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~~~~~lp~-~~~~L~~L~~L 576 (1206)
+.+++|||++| .++.+| .+|.++++|++|+|++|.|+.+|+ .|.+|++|++|+|++| .+..+|. .|.++++|++|
T Consensus 52 ~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEE
Confidence 47899999999 888887 679999999999999999998865 6899999999999999 5666664 68999999999
Q ss_pred ecCCCCccccCCc-ccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceE
Q 045303 577 RNSNADELEEMPK-GFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALS 655 (1206)
Q Consensus 577 ~l~~n~~~~~~p~-~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 655 (1206)
++++|. +..+|. .|+++++|++|++..+... ....+..+..+++|+.|+
T Consensus 130 ~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~-----------------------------~~~~~~~~~~l~~L~~L~ 179 (635)
T 4g8a_A 130 VAVETN-LASLENFPIGHLKTLKELNVAHNLIQ-----------------------------SFKLPEYFSNLTNLEHLD 179 (635)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCC-----------------------------CCCCCGGGGGCTTCCEEE
T ss_pred ECCCCc-CCCCChhhhhcCcccCeeccccCccc-----------------------------cCCCchhhccchhhhhhc
Confidence 999998 666765 4889999998865433210 011234466778888899
Q ss_pred EeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCC--CCC-CCCCCCCCceee
Q 045303 656 LEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMST--SLP-SVGQLPFLKELD 732 (1206)
Q Consensus 656 l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~--~l~-~l~~l~~L~~L~ 732 (1206)
+++|.+..........+..+. .....++++.+.+..++.... ....+..+.+.+|... ..+ .+..++.++...
T Consensus 180 L~~N~l~~~~~~~l~~L~~l~--~~~~~~~ls~n~l~~i~~~~~--~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~ 255 (635)
T 4g8a_A 180 LSSNKIQSIYCTDLRVLHQMP--LLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 255 (635)
T ss_dssp CCSSCCCEECGGGGHHHHTCT--TCCCEEECTTCCCCEECTTTT--TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEE
T ss_pred ccCccccccccccccchhhhh--hhhhhhhcccCcccccCcccc--cchhhhhhhhhcccccccccchhhcCCccccccc
Confidence 988887765544433333221 234456677776666655443 3445666777666441 111 234444555444
Q ss_pred ecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCC-CCCCCcc
Q 045303 733 ISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLP-RRLLLLE 811 (1206)
Q Consensus 733 L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp-~~l~~L~ 811 (1206)
+..+..................+..+....+.....-... . ........+.+++.+.+.+ +.+....+ .....|+
T Consensus 256 l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~--~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~L~ 331 (635)
T 4g8a_A 256 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL-D--GIIDLFNCLTNVSSFSLVS-VTIERVKDFSYNFGWQ 331 (635)
T ss_dssp EEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE-E--ECTTTTGGGTTCSEEEEES-CEEEECGGGGSCCCCS
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhhcccc-c--chhhhhhhhcccccccccc-cccccccccccchhhh
Confidence 4321110000000000000000112222221111000000 0 0000122234444554444 22221111 2233445
Q ss_pred EEEEecccCccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhh---cccCCCCCCC
Q 045303 812 TLDITSCHQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYI---ARIQLPPSLK 888 (1206)
Q Consensus 812 ~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~~~~~~~L~ 888 (1206)
.|++.+|.........++.|+.+++.+|....... ...+++|+.+++++|...... .......+++
T Consensus 332 ~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~-----------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~ 400 (635)
T 4g8a_A 332 HLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----------EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLK 400 (635)
T ss_dssp EEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCC-----------CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCC
T ss_pred hhhcccccccCcCcccchhhhhcccccccCCCCcc-----------cccccccccchhhccccccccccccchhhhhhhh
Confidence 55555444222222334444444444443221100 112334444444433221100 0001112222
Q ss_pred eEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchh--hc
Q 045303 889 RLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAE--RL 966 (1206)
Q Consensus 889 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~ 966 (1206)
.+++..+.... .+......++++.+++..+......+. ..
T Consensus 401 -------------------------------------~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 401 -------------------------------------YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp -------------------------------------EEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred -------------------------------------hhhcccccccc-ccccccccccccchhhhhccccccccccccc
Confidence 22222221111 111111223555555555444333221 22
Q ss_pred CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcc-cccCCCCCCCCccEEEeccccCccccccccCCCCccCe
Q 045303 967 DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLE-SFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLD 1045 (1206)
Q Consensus 967 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 1045 (1206)
...+++.++++.|......+..+..+++|+.|+|++|.... ..|..+..+++|++|+|++|.+.+..|..|.++++|++
T Consensus 443 ~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 443 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 33667777777777766666667777777777777776443 45566667777777777777777766777777777777
Q ss_pred eeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCC-CCcceEEeec
Q 045303 1046 LDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRF-TSLRRFTICG 1098 (1206)
Q Consensus 1046 L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l-~~L~~L~ls~ 1098 (1206)
|+|++|.+.+..+.. ..+++|++|+|++|++++..|. .+.++ ++|+.|++++
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSS-CTTCCCTTCCEEECTT
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHH-HHHhhhCcCCEEEeeC
Confidence 777777766654443 5667777777777777765555 56665 5677777765
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=9.5e-30 Score=315.76 Aligned_cols=503 Identities=16% Similarity=0.111 Sum_probs=287.1
Q ss_pred EEecCCCCcccCCccccCccccceeeccccccccccc-cccccccccEEecCCCccccccc-ccccCCCccceeecCCCC
Q 045303 505 FSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 505 L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~~~~~lp-~~~~~L~~L~~L~l~~n~ 582 (1206)
.+-++- .++.+|..+. .++++|||++|.|+.+|+ +|.++++|++|||++| .+..+| ..|.+|++|++|+|++|+
T Consensus 36 ~~c~~~-~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 36 YQCMEL-NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EECTTS-CCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCC-CcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCc
Confidence 344444 7888998765 589999999999998875 6999999999999999 566664 569999999999999999
Q ss_pred ccccCCcc-cCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCC
Q 045303 583 ELEEMPKG-FGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSAR 661 (1206)
Q Consensus 583 ~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 661 (1206)
+..+|.+ |.++++|++|++..+. +.......|+++++|+.|++++|.+
T Consensus 112 -l~~l~~~~f~~L~~L~~L~Ls~N~------------------------------l~~l~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKLVAVETN------------------------------LASLENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp -CCEECGGGGTTCTTCCEEECTTSC------------------------------CCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred -CCCCCHHHhcCCCCCCEEECCCCc------------------------------CCCCChhhhhcCcccCeeccccCcc
Confidence 6777754 7888888888543221 1122334477788888888888876
Q ss_pred CcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCC-cCC--CCCCCccEEEEcccCCCCCC-CCCCCCCCceeeecCCC
Q 045303 662 SERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSW-LGD--SSFSKLARLELRLCMSTSLP-SVGQLPFLKELDISGMD 737 (1206)
Q Consensus 662 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~--~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~ 737 (1206)
..... ...+..+++|+.|++++|.+..++.. +.. ........++++.|.+..++ .......++.+++.+|.
T Consensus 161 ~~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 161 QSFKL-----PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CCCCC-----CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCCC-----chhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 53211 12233456777888887776655432 210 01112345667777664443 33334455666666554
Q ss_pred Cceeec-ccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccc---cCCC---CCCCCc
Q 045303 738 GVVSVG-SVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQ---GTLP---RRLLLL 810 (1206)
Q Consensus 738 ~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~---~~lp---~~l~~L 810 (1206)
...... ..+.+ ++.++...+.....................+..+....+.. .... ..++ ..+..+
T Consensus 236 ~~~~~~~~~~~~------l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 236 DSLNVMKTCIQG------LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL-AYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp SSHHHHHHHHHT------TTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE-ECCCSCEEECTTTTGGGTTC
T ss_pred ccccccchhhcC------Ccccccccccccccccccccccccccccccccchhhhhhhh-hhhcccccchhhhhhhhccc
Confidence 322111 11111 33444333321110000000000000111122333333222 1100 0011 223445
Q ss_pred cEEEEecccCc-cccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCe
Q 045303 811 ETLDITSCHQL-LVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKR 889 (1206)
Q Consensus 811 ~~L~l~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 889 (1206)
+.+.+.++... ...+.....++.|++.+|....+.. . .++.++.
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------~-----------------------~l~~L~~ 353 (635)
T 4g8a_A 309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------------L-----------------------KLKSLKR 353 (635)
T ss_dssp SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC------------C-----------------------BCTTCCE
T ss_pred ccccccccccccccccccchhhhhhhcccccccCcCc------------c-----------------------cchhhhh
Confidence 55555544411 1123334445555555443222211 1 2234444
Q ss_pred EEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCcc--ccccCCCCccccceEEecccCCcccchhhcC
Q 045303 890 LTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLA--FLTRNGNLPQALKYLGVESCSKLESLAERLD 967 (1206)
Q Consensus 890 L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 967 (1206)
+.+..+...... ...+++ +++.++++.+.... ..+.......+++.+++..+...........
T Consensus 354 l~l~~n~~~~~~--------~~~~l~-------~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~ 418 (635)
T 4g8a_A 354 LTFTSNKGGNAF--------SEVDLP-------SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG 418 (635)
T ss_dssp EEEESCCSCCBC--------CCCBCT-------TCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTT
T ss_pred cccccccCCCCc--------cccccc-------ccccchhhccccccccccccchhhhhhhhhhhccccccccccccccc
Confidence 444433211100 001111 13333333222110 0011111224677777777765555445555
Q ss_pred CCCcceeeeccccCcCccc-ccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCcc-ccccccCCCCccCe
Q 045303 968 NTSLEEITILNLENLKSLP-AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLK-ALPNCMHNLTSLLD 1045 (1206)
Q Consensus 968 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~ 1045 (1206)
..+|+.+++..++.....+ ..+.++++++.+++++|.+....+..+..+++|+.|++++|.... ..|..|..+++|++
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~ 498 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 498 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred cccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence 6788888888777666543 456778888888888887777777777778888888888886544 45777888888888
Q ss_pred eeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecC
Q 045303 1046 LDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLP 1107 (1206)
Q Consensus 1046 L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp 1107 (1206)
|+|++|.+.+..|.. ..+++|++|+|++|++++..|. .|.++++|++|+|++ |.+..++
T Consensus 499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~-~~~~l~~L~~L~Ls~--N~l~~~~ 558 (635)
T 4g8a_A 499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSL--NHIMTSK 558 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCG-GGTTCTTCCEEECTT--SCCCBCC
T ss_pred EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChh-HHhCCCCCCEEECCC--CcCCCCC
Confidence 888888887766655 6778888888888888755444 678888888888875 4555554
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.4e-30 Score=321.35 Aligned_cols=396 Identities=14% Similarity=0.101 Sum_probs=224.4
Q ss_pred cccccccccccccccccEEecCCCcccc-----------------ccccccc--CCCccceeecCCCCccccCCcccCCc
Q 045303 534 TRIQILPESINSLYNLHTILLEDCWKLK-----------------KLCKDMG--NLTKLRHLRNSNADELEEMPKGFGKL 594 (1206)
Q Consensus 534 n~i~~lp~~~~~L~~L~~L~L~~n~~~~-----------------~lp~~~~--~L~~L~~L~l~~n~~~~~~p~~~~~l 594 (1206)
|.++.+|..|+++++|++|+|++|.... .+|..++ ++++|++|+|++|.+...+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4455556556666666666666653322 1555555 66666666666665555556556666
Q ss_pred CccccCCceEeCCCCC-CCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhh
Q 045303 595 TCLLTLGRFVVGKDSG-SGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLR 673 (1206)
Q Consensus 595 ~~L~~L~~~~~~~~~~-~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 673 (1206)
++|+.|++..+....+ ..-..+.++ ...+..+++|+.|++++|.+...+.. .
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L----------------------~~~~~~l~~L~~L~Ls~N~L~~ip~~-----~ 567 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRL----------------------ADDEDTGPKIQIFYMGYNNLEEFPAS-----A 567 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHH----------------------HHCTTTTTTCCEEECCSSCCCBCCCH-----H
T ss_pred CCCCEEECcCCCCcccccchHHHHhh----------------------hhcccccCCccEEEeeCCcCCccCCh-----h
Confidence 6666554322210000 000000000 01234556888888888877633220 1
Q ss_pred cCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC-CCCCCCC-CceeeecCCCCceeecccccCCCC
Q 045303 674 MLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP-SVGQLPF-LKELDISGMDGVVSVGSVFYGNSC 751 (1206)
Q Consensus 674 ~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~-L~~L~L~~~~~~~~~~~~~~~~~~ 751 (1206)
.+..+++|+.|++++|.+..+| .+. .+++|+.|++++|.+..+| .+..+++ |+.|+|++|... .++..+..
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~~lp-~~~--~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~--- 640 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVRHLE-AFG--TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA--- 640 (876)
T ss_dssp HHTTCTTCCEEECTTSCCCBCC-CCC--TTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT---
T ss_pred hhhcCCCCCEEECCCCCcccch-hhc--CCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhc---
Confidence 3455778899999998888888 554 6889999999999987666 6888888 999999988754 22221111
Q ss_pred CCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCCCCCccEEEEecccCccccccCCCCc
Q 045303 752 SVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRLLLLETLDITSCHQLLVTIQCLPAL 831 (1206)
Q Consensus 752 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~~~~~~~~~l~~L 831 (1206)
...++|+.|++++ |.+.+.+|.....+ ....+++|
T Consensus 641 -------------------------------~~~~~L~~L~Ls~-N~l~g~ip~l~~~l-------------~~~~~~~L 675 (876)
T 4ecn_A 641 -------------------------------KSVYVMGSVDFSY-NKIGSEGRNISCSM-------------DDYKGINA 675 (876)
T ss_dssp -------------------------------TCSSCEEEEECCS-SCTTTTSSSCSSCT-------------TTCCCCCE
T ss_pred -------------------------------cccCCCCEEECcC-CcCCCccccchhhh-------------ccccCCCc
Confidence 0124467777776 55654444211000 00122345
Q ss_pred ceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCeEEEeccCCCcCCcCcccccccc
Q 045303 832 SELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSS 911 (1206)
Q Consensus 832 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 911 (1206)
+.|++++|.+..+ +...+..+++|+.|++++|..- .+ +... +
T Consensus 676 ~~L~Ls~N~L~~l---------p~~~~~~l~~L~~L~Ls~N~L~-~i-----------------------p~~~-----~ 717 (876)
T 4ecn_A 676 STVTLSYNEIQKF---------PTELFATGSPISTIILSNNLMT-SI-----------------------PENS-----L 717 (876)
T ss_dssp EEEECCSSCCCSC---------CHHHHHTTCCCSEEECCSCCCS-CC-----------------------CTTS-----S
T ss_pred CEEEccCCcCCcc---------CHHHHccCCCCCEEECCCCcCC-cc-----------------------ChHH-----h
Confidence 5555555543321 2223334455555555544221 00 0000 0
Q ss_pred cCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcCCCCcceeeeccccCcCccccccc-
Q 045303 912 SGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLH- 990 (1206)
Q Consensus 912 ~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~- 990 (1206)
. ..++. | ...++|+.|++++|.+. .+|..+.
T Consensus 718 -----------------------------~-~~~~~--------l---------~nl~~L~~L~Ls~N~L~-~lp~~l~~ 749 (876)
T 4ecn_A 718 -----------------------------K-PKDGN--------Y---------KNTYLLTTIDLRFNKLT-SLSDDFRA 749 (876)
T ss_dssp -----------------------------S-CTTSC--------C---------TTGGGCCEEECCSSCCC-CCCGGGST
T ss_pred -----------------------------c-ccccc--------c---------cccCCccEEECCCCCCc-cchHHhhh
Confidence 0 00000 0 00135566666666554 5666665
Q ss_pred -CCCccceeeccccCCcccccCCCCCCCCccEEEecc------ccCccccccccCCCCccCeeeeecCCCCccCCCCCCC
Q 045303 991 -NLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWD------CENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFP 1063 (1206)
Q Consensus 991 -~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~------n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 1063 (1206)
.+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..|.++++|+.|+|++|.+ +.+|.. ..
T Consensus 750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~ 826 (876)
T 4ecn_A 750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LT 826 (876)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC
T ss_pred ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hc
Confidence 77778888888776665 666677777888887765 777788888888899999999999988 566654 34
Q ss_pred CCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1064 TNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1064 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
++|+.|+|++|++...-+. .+.....+..+.|.+
T Consensus 827 ~~L~~LdLs~N~l~~i~~~-~~~~~~~~~~~~L~~ 860 (876)
T 4ecn_A 827 PQLYILDIADNPNISIDVT-SVCPYIEAGMYVLLY 860 (876)
T ss_dssp SSSCEEECCSCTTCEEECG-GGHHHHHTTCCEEEC
T ss_pred CCCCEEECCCCCCCccChH-HccccccchheeecC
Confidence 6888899988887643332 333333444444443
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=4.9e-29 Score=301.92 Aligned_cols=265 Identities=14% Similarity=0.021 Sum_probs=161.9
Q ss_pred CCceeEEEecCCCCcccCCccccCccccceeecccccccccc-ccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 499 LPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 499 ~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
+...+++++++| .+..+|..+. ++|++|++++|.|+.+| ..|.++++|++|+|++|......|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~-~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNR-NLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTS-CCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCC-CCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 444588999988 8888887665 78999999999988776 5788899999999999844444467788999999999
Q ss_pred cCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCccc-ccccccCCCCCCCceEE
Q 045303 578 NSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGD-ASEAQLNNKVNLQALSL 656 (1206)
Q Consensus 578 l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~-~~~~~l~~l~~L~~L~l 656 (1206)
+++|. +..+|.. .+++|++|++..+. +.. ..+..+.++++|+.|++
T Consensus 107 Ls~N~-l~~lp~~--~l~~L~~L~Ls~N~------------------------------l~~l~~p~~~~~l~~L~~L~L 153 (562)
T 3a79_B 107 VSHNR-LQNISCC--PMASLRHLDLSFND------------------------------FDVLPVCKEFGNLTKLTFLGL 153 (562)
T ss_dssp CTTSC-CCEECSC--CCTTCSEEECCSSC------------------------------CSBCCCCGGGGGCTTCCEEEE
T ss_pred CCCCc-CCccCcc--ccccCCEEECCCCC------------------------------ccccCchHhhcccCcccEEec
Confidence 99988 6678776 77777777543322 111 11345777888999999
Q ss_pred eecCCCcchhhHHHHhhcCCCCCCccEEEEEecCC--C-CCCCCcCCCCCCCccEEEEcccCC-CCCC--CCCCCCCCce
Q 045303 657 EWSARSERCEFEADVLRMLKPHRDVQELTITGYGG--T-KFPSWLGDSSFSKLARLELRLCMS-TSLP--SVGQLPFLKE 730 (1206)
Q Consensus 657 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~-~~p~~~~~~~~~~L~~L~L~~~~~-~~l~--~l~~l~~L~~ 730 (1206)
++|.+... .+..+..+ +|+.|++++|.+ . ..|.++..... ..-.++++.|.+ ..++ .+..+++|+.
T Consensus 154 ~~n~l~~~------~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~ 225 (562)
T 3a79_B 154 SAAKFRQL------DLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQL 225 (562)
T ss_dssp ECSBCCTT------TTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEE
T ss_pred CCCccccC------chhhhhhc-eeeEEEeecccccccccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEE
Confidence 98876531 12223323 458999998876 3 33444431111 122556777776 3333 3567888888
Q ss_pred eeecCCCCc----eeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCC
Q 045303 731 LDISGMDGV----VSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRR 806 (1206)
Q Consensus 731 L~L~~~~~~----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~ 806 (1206)
|++++|... ......+.+ +++|+.|.+.++..-...... .......++|++|++++ +.++|.+|..
T Consensus 226 L~l~~n~~~~~~l~~~~~~l~~------l~~L~~L~L~~~~l~~~~~~~---~~~~~~~~~L~~L~l~~-n~l~~~ip~~ 295 (562)
T 3a79_B 226 SNIKLNDENCQRLMTFLSELTR------GPTLLNVTLQHIETTWKCSVK---LFQFFWPRPVEYLNIYN-LTITERIDRE 295 (562)
T ss_dssp EEEECCSTTHHHHHHHHHHHHS------CSSCEEEEEEEEEECHHHHHH---HHHHHTTSSEEEEEEEE-EEECSCCCCC
T ss_pred ecccccccccchHHHHHHHHhc------cCcceEEEecCCcCcHHHHHH---HHHhhhcccccEEEEec-cEeeccccch
Confidence 888876411 001111222 566777776654321100000 00001134777777777 5666666654
Q ss_pred C-----CCccEEEEec
Q 045303 807 L-----LLLETLDITS 817 (1206)
Q Consensus 807 l-----~~L~~L~l~~ 817 (1206)
+ ++|+.|.+.+
T Consensus 296 ~~~~~~~~L~~L~~~~ 311 (562)
T 3a79_B 296 EFTYSETALKSLMIEH 311 (562)
T ss_dssp CCCCCSCSCCEEEEEE
T ss_pred hhhcccccchheehhh
Confidence 4 4444444433
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.8e-29 Score=301.82 Aligned_cols=443 Identities=15% Similarity=0.127 Sum_probs=254.2
Q ss_pred ceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCcccCCcCccccCCceEeC
Q 045303 527 RCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGRFVVG 606 (1206)
Q Consensus 527 ~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~ 606 (1206)
++|++++|.++.+|..+. ++|++|++++|......|..|.++++|++|++++|.+....|..|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------- 67 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF------------- 67 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTT-------------
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhc-------------
Confidence 689999999999998776 89999999999544444578999999999999999832222333333
Q ss_pred CCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEE
Q 045303 607 KDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTI 686 (1206)
Q Consensus 607 ~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l 686 (1206)
+++|++|++++|.+..
T Consensus 68 -----------------------------------------l~~L~~L~Ls~N~l~~----------------------- 83 (520)
T 2z7x_B 68 -----------------------------------------NQELEYLDLSHNKLVK----------------------- 83 (520)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCE-----------------------
T ss_pred -----------------------------------------ccCCCEEecCCCceee-----------------------
Confidence 3444455555444321
Q ss_pred EecCCCCCCCCcCCCCCCCccEEEEcccCCCC--CC-CCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEec
Q 045303 687 TGYGGTKFPSWLGDSSFSKLARLELRLCMSTS--LP-SVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSF 763 (1206)
Q Consensus 687 ~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~--l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 763 (1206)
+|.. .+++|++|++++|.+.. +| .++.+++|++|++++|.... ..+.
T Consensus 84 -------lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~---------------- 133 (520)
T 2z7x_B 84 -------ISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL---------------- 133 (520)
T ss_dssp -------EECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG----------------
T ss_pred -------cCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhcc----------------
Confidence 2211 23444444444444422 22 34455555555555544221 0010
Q ss_pred cCcccccccccCCCCCcccccCCcc--cEEeeccCccc--ccCCCCCCCCcc----EEEEecccC----ccccccCCCCc
Q 045303 764 SDMREWEEWIPCGAGQEVDEVFPKL--RKLSLRHCDKL--QGTLPRRLLLLE----TLDITSCHQ----LLVTIQCLPAL 831 (1206)
Q Consensus 764 ~~~~~l~~~~~~~~~~~~~~~~~~L--~~L~l~~c~~l--~~~lp~~l~~L~----~L~l~~~~~----~~~~~~~l~~L 831 (1206)
.+++| +.|++++ +.+ .+..|..+..++ .+++++|.. ....+..+++|
T Consensus 134 --------------------~l~~L~L~~L~l~~-n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 134 --------------------PIAHLNISKVLLVL-GETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp --------------------GGTTSCEEEEEEEE-CTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred --------------------ccccceeeEEEeec-ccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 12222 3344433 223 223333333322 122222221 11234456666
Q ss_pred ceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhh----cccCCCCCCCeEEEeccCCCcCCcCcccc
Q 045303 832 SELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYI----ARIQLPPSLKRLTIYWCHNLKSLTGEQDV 907 (1206)
Q Consensus 832 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 907 (1206)
+.+++++|.... ....+.+.++ .+..+++|+.|++++|...... ......++|+.|++++|....
T Consensus 193 ~~L~l~~n~~~~-~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-------- 261 (520)
T 2z7x_B 193 ELSNIKCVLEDN-KCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG-------- 261 (520)
T ss_dssp EECCEEECCSTT-TTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEES--------
T ss_pred eecccccccccc-ccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccC--------
Confidence 666666653100 0011233333 3455677777777766432211 111112356666655553111
Q ss_pred cccccCCCCccccccccceEEEeccCCccccccCC-----CCccccceEEecccCCcccch-h----hcCCCCcceeeec
Q 045303 908 CSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNG-----NLPQALKYLGVESCSKLESLA-E----RLDNTSLEEITIL 977 (1206)
Q Consensus 908 ~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~-----~~~~~L~~L~l~~~~~l~~~~-~----~~~~~~L~~L~l~ 977 (1206)
.++... ...+.|+.+++++|.. .+| . .+...+|+.|+++
T Consensus 262 -----------------------------~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~ 310 (520)
T 2z7x_B 262 -----------------------------QLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVS 310 (520)
T ss_dssp -----------------------------CCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEE
T ss_pred -----------------------------ccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcC
Confidence 111111 2234566666666554 232 1 1122567888888
Q ss_pred cccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCcc--ccccccCCCCccCeeeeecCCCCc
Q 045303 978 NLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLK--ALPNCMHNLTSLLDLDIRGCPSVV 1055 (1206)
Q Consensus 978 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~L~~n~~~~ 1055 (1206)
+|.+.... .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+
T Consensus 311 ~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 311 GTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred CCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 87754322 12567788888888887777777777778888888888887775 455667788888888888887776
Q ss_pred cCCCC--CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCCCC
Q 045303 1056 SFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIGEN 1133 (1206)
Q Consensus 1056 ~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~ 1133 (1206)
.+|.. ..+++|+.|++++|.+++.+|.. +. ++|+.|++++ +.++.+|.. . ..
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~--N~l~~ip~~--------------------~-~~ 442 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHS--NKIKSIPKQ--------------------V-VK 442 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCS--SCCCCCCGG--------------------G-GG
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCC--Ccccccchh--------------------h-hc
Confidence 44432 56678888888888777655542 21 5777777765 344444421 2 26
Q ss_pred cCcccccccccCCCCCCCCCCCC--ccccceecccCChh
Q 045303 1134 LTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1134 l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~~ 1170 (1206)
+++|+.|++++| .++.+|...+ +++|+.|++++||.
T Consensus 443 l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 443 LEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCCC
Confidence 789999999999 6888887533 78999999999985
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=7.2e-29 Score=288.72 Aligned_cols=217 Identities=19% Similarity=0.188 Sum_probs=109.2
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccc-cccccccccccccEEecCCCcccccccccccCCCcccee
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 576 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L 576 (1206)
+.+.|++|++++| .++.+|.+|+++++|++|++++|.+. .+|.+++++++|+++++++|.. .+|++|
T Consensus 9 ~~~~L~~L~l~~n-~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSS-NLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccC-chhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 3578999999999 77999999999999999999999988 8999999999887777766621 456777
Q ss_pred ecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEE
Q 045303 577 RNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSL 656 (1206)
Q Consensus 577 ~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l 656 (1206)
++++|. +..+|.. .+ +|+.|++
T Consensus 77 ~l~~~~-l~~lp~~---~~------------------------------------------------------~L~~L~l 98 (454)
T 1jl5_A 77 ELNNLG-LSSLPEL---PP------------------------------------------------------HLESLVA 98 (454)
T ss_dssp ECTTSC-CSCCCSC---CT------------------------------------------------------TCSEEEC
T ss_pred EecCCc-cccCCCC---cC------------------------------------------------------CCCEEEc
Confidence 777776 4444431 11 2333333
Q ss_pred eecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCC
Q 045303 657 EWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGM 736 (1206)
Q Consensus 657 ~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~ 736 (1206)
++|.+...+. .+.+|+.|++++|.+..+|.. .++|++|++++|.++.+|.++.+++|++|++++|
T Consensus 99 ~~n~l~~lp~----------~~~~L~~L~l~~n~l~~l~~~-----~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 99 SCNSLTELPE----------LPQSLKSLLVDNNNLKALSDL-----PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CSSCCSSCCC----------CCTTCCEEECCSSCCSCCCSC-----CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred cCCcCCcccc----------ccCCCcEEECCCCccCcccCC-----CCCCCEEECcCCCCCCCcccCCCCCCCEEECCCC
Confidence 3333322110 023455555555555544431 2466666666666655666666666777776666
Q ss_pred CCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCCCCCccEEEEe
Q 045303 737 DGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRLLLLETLDIT 816 (1206)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~ 816 (1206)
.... ++. .+++|+.|+++++. +..+ + ..+.+++|+.|++++ ++++ .+|...++|++|+++
T Consensus 164 ~l~~-lp~---------~~~~L~~L~L~~n~-l~~l-~------~~~~l~~L~~L~l~~-N~l~-~l~~~~~~L~~L~l~ 223 (454)
T 1jl5_A 164 SLKK-LPD---------LPPSLEFIAAGNNQ-LEEL-P------ELQNLPFLTAIYADN-NSLK-KLPDLPLSLESIVAG 223 (454)
T ss_dssp CCSC-CCC---------CCTTCCEEECCSSC-CSSC-C------CCTTCTTCCEEECCS-SCCS-SCCCCCTTCCEEECC
T ss_pred cCcc-cCC---------CcccccEEECcCCc-CCcC-c------cccCCCCCCEEECCC-CcCC-cCCCCcCcccEEECc
Confidence 5332 111 03455555555542 1111 1 233467777777777 5666 455544555555555
Q ss_pred ccc
Q 045303 817 SCH 819 (1206)
Q Consensus 817 ~~~ 819 (1206)
+|.
T Consensus 224 ~n~ 226 (454)
T 1jl5_A 224 NNI 226 (454)
T ss_dssp SSC
T ss_pred CCc
Confidence 553
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=1.1e-30 Score=319.20 Aligned_cols=37 Identities=30% Similarity=0.424 Sum_probs=29.7
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeecccccc
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRI 536 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i 536 (1206)
.+++.|+|++|.....+|.+|++|++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~ 117 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCcc
Confidence 5788888888855567888888888888888888865
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.96 E-value=1.3e-27 Score=289.44 Aligned_cols=452 Identities=15% Similarity=0.109 Sum_probs=249.9
Q ss_pred ccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCcccCCcCccccCCc
Q 045303 523 LKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGR 602 (1206)
Q Consensus 523 l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~ 602 (1206)
+...+++++++|.++.+|..+. ++|++|++++|......|..|.++++|++|++++|.+....|..|+++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-- 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL-- 105 (562)
T ss_dssp ---CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE--
T ss_pred cCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE--
Confidence 3445899999999999998764 899999999995444445689999999999999998333334445555555555
Q ss_pred eEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCcc
Q 045303 603 FVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQ 682 (1206)
Q Consensus 603 ~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~ 682 (1206)
++++|.+...+.. .+++|+
T Consensus 106 ----------------------------------------------------~Ls~N~l~~lp~~---------~l~~L~ 124 (562)
T 3a79_B 106 ----------------------------------------------------DVSHNRLQNISCC---------PMASLR 124 (562)
T ss_dssp ----------------------------------------------------ECTTSCCCEECSC---------CCTTCS
T ss_pred ----------------------------------------------------ECCCCcCCccCcc---------ccccCC
Confidence 3333333221110 234455
Q ss_pred EEEEEecCCCCCC--CCcCCCCCCCccEEEEcccCCCCCCCCCCCCCC--ceeeecCCCC--ceeecccccCCCCCCCCC
Q 045303 683 ELTITGYGGTKFP--SWLGDSSFSKLARLELRLCMSTSLPSVGQLPFL--KELDISGMDG--VVSVGSVFYGNSCSVPFP 756 (1206)
Q Consensus 683 ~L~l~~~~~~~~p--~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~~~~~~~~~ 756 (1206)
.|++++|.+..+| ..+. .+++|+.|++++|.+.. ..++.+++| +.|++++|.. ....+..+ +
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~--~l~~L~~L~L~~n~l~~-~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l---------~ 192 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFG--NLTKLTFLGLSAAKFRQ-LDLLPVAHLHLSCILLDLVSYHIKGGETESL---------Q 192 (562)
T ss_dssp EEECCSSCCSBCCCCGGGG--GCTTCCEEEEECSBCCT-TTTGGGTTSCEEEEEEEESSCCCCSSSCCEE---------E
T ss_pred EEECCCCCccccCchHhhc--ccCcccEEecCCCcccc-CchhhhhhceeeEEEeecccccccccCcccc---------c
Confidence 5555555444433 3343 45666666666666532 223333444 6666666554 22211111 1
Q ss_pred CccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCC----CCCCCccEEEEeccc-------Cccccc
Q 045303 757 SLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLP----RRLLLLETLDITSCH-------QLLVTI 825 (1206)
Q Consensus 757 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp----~~l~~L~~L~l~~~~-------~~~~~~ 825 (1206)
.|. . ..-.+++++ +.+.+.++ ..+++|+.+++++|. .....+
T Consensus 193 ~l~-------------------------~-~~l~l~l~~-n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l 245 (562)
T 3a79_B 193 IPN-------------------------T-TVLHLVFHP-NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL 245 (562)
T ss_dssp ECC-------------------------E-EEEEEEECS-SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred ccC-------------------------c-ceEEEEecC-ccchhhhhhhcccccceEEEecccccccccchHHHHHHHH
Confidence 111 0 001223333 33332333 234455555555542 111224
Q ss_pred cCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccC---CCCCCCeEEEeccCCCcCCc
Q 045303 826 QCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQ---LPPSLKRLTIYWCHNLKSLT 902 (1206)
Q Consensus 826 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~---~~~~L~~L~l~~~~~l~~~~ 902 (1206)
..++.|+.+++.++... .+.+.+..+ .. ..++|++|++++|.....++... ...+++.|.+.++.
T Consensus 246 ~~l~~L~~L~L~~~~l~---~~~~~~~~~-~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~------ 313 (562)
T 3a79_B 246 TRGPTLLNVTLQHIETT---WKCSVKLFQ-FF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVK------ 313 (562)
T ss_dssp HSCSSCEEEEEEEEEEC---HHHHHHHHH-HH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEE------
T ss_pred hccCcceEEEecCCcCc---HHHHHHHHH-hh--hcccccEEEEeccEeeccccchhhhcccccchheehhhcc------
Confidence 55566666666554321 111222111 11 12356666666554322221100 01223333322211
Q ss_pred CcccccccccCCCCccccccccceEEEeccCCccccccC--CC--CccccceEEecccCCcccchhhcCCCCcceeeecc
Q 045303 903 GEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRN--GN--LPQALKYLGVESCSKLESLAERLDNTSLEEITILN 978 (1206)
Q Consensus 903 ~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~--~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 978 (1206)
... + .++.. .. ...+++.|++++|...... .....++|++|++++
T Consensus 314 ----------------------------~~~-~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 314 ----------------------------NQV-F-LFSKEALYSVFAEMNIKMLSISDTPFIHMV-CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp ----------------------------ECC-C-SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECCS
T ss_pred ----------------------------cce-e-ecChhhhhhhhccCcceEEEccCCCccccc-CccCCCCceEEECCC
Confidence 110 0 00000 00 0024666666666432211 112347788888888
Q ss_pred ccCcCcccccccCCCccceeeccccCCcc--cccCCCCCCCCccEEEeccccCcccccc-ccCCCCccCeeeeecCCCCc
Q 045303 979 LENLKSLPAGLHNLHHLQKIWIGYCPNLE--SFPEEGLPSTKLTELTIWDCENLKALPN-CMHNLTSLLDLDIRGCPSVV 1055 (1206)
Q Consensus 979 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~~~ 1055 (1206)
|.+.+.+|..+.++++|++|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~ 442 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc
Confidence 88877777778888888888888887665 3455677788888888888888774544 47778888888888888776
Q ss_pred cCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCCCCcC
Q 045303 1056 SFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIGENLT 1135 (1206)
Q Consensus 1056 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~ 1135 (1206)
.+|.. .+++|+.|++++|.++ .+|...+ .+++|++|++++ +.++.+|.. .+..++
T Consensus 443 ~~~~~-l~~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~--N~l~~l~~~--------------------~~~~l~ 497 (562)
T 3a79_B 443 SVFRC-LPPKVKVLDLHNNRIM-SIPKDVT-HLQALQELNVAS--NQLKSVPDG--------------------VFDRLT 497 (562)
T ss_dssp GGGSS-CCTTCSEEECCSSCCC-CCCTTTT-SSCCCSEEECCS--SCCCCCCTT--------------------STTTCT
T ss_pred chhhh-hcCcCCEEECCCCcCc-ccChhhc-CCCCCCEEECCC--CCCCCCCHH--------------------HHhcCC
Confidence 55542 2268888888888887 5666333 788888888865 455566642 123566
Q ss_pred cccccccccCC
Q 045303 1136 SLKYLYLIDCP 1146 (1206)
Q Consensus 1136 ~L~~L~l~~n~ 1146 (1206)
+|+.|++++|+
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 77777777775
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=3e-27 Score=275.34 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=76.3
Q ss_pred hccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccce
Q 045303 496 LNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRH 575 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~ 575 (1206)
+..+++|++|++++| .+..+| .|..+++|++|++++|.++.+| ++.+++|++|++++| .+..+| ++.+++|++
T Consensus 38 ~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 38 EEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCE
T ss_pred hhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee--cCCCCcCCE
Confidence 456788999999998 777777 6888999999999999988886 888999999999998 566664 888999999
Q ss_pred eecCCCCccccCCcccCCcCccccCC
Q 045303 576 LRNSNADELEEMPKGFGKLTCLLTLG 601 (1206)
Q Consensus 576 L~l~~n~~~~~~p~~~~~l~~L~~L~ 601 (1206)
|++++|. +..+| ++++++|++|+
T Consensus 111 L~L~~N~-l~~l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 111 LNCDTNK-LTKLD--VSQNPLLTYLN 133 (457)
T ss_dssp EECCSSC-CSCCC--CTTCTTCCEEE
T ss_pred EECCCCc-CCeec--CCCCCcCCEEE
Confidence 9999887 44454 56666666553
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=1.2e-26 Score=274.05 Aligned_cols=384 Identities=16% Similarity=0.111 Sum_probs=240.8
Q ss_pred EEEecCCCCcccCCccccCccccceeeccccccccc-cccccccccccEEecCCCcccccc-cccccCCCccceeecCCC
Q 045303 504 VFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKL-CKDMGNLTKLRHLRNSNA 581 (1206)
Q Consensus 504 ~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~l-p~~~~~L~~L~~L~l~~n 581 (1206)
.++.+++ .+..+|. +. ++|++|+|++|.|+.+ |..|.++++|++|++++|.....+ |..|.++++|++|++++|
T Consensus 14 ~~~c~~~-~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINR-GLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSS-CCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCC-CcccCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4566666 7777776 33 7888888888888865 667888888888888888554455 456788888888888888
Q ss_pred CccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCC
Q 045303 582 DELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSAR 661 (1206)
Q Consensus 582 ~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 661 (1206)
.+....|..+++++ +|++|++++|.+
T Consensus 90 ~l~~~~~~~~~~l~------------------------------------------------------~L~~L~L~~n~l 115 (455)
T 3v47_A 90 QFLQLETGAFNGLA------------------------------------------------------NLEVLTLTQCNL 115 (455)
T ss_dssp TTCEECTTTTTTCT------------------------------------------------------TCCEEECTTSCC
T ss_pred ccCccChhhccCcc------------------------------------------------------cCCEEeCCCCCC
Confidence 73333343333333 444444444433
Q ss_pred CcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCC-CC--CCCCCCCceeeecCCCC
Q 045303 662 SERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSL-PS--VGQLPFLKELDISGMDG 738 (1206)
Q Consensus 662 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l-~~--l~~l~~L~~L~L~~~~~ 738 (1206)
.... +. +..+. .+++|++|++++|.+..+ |. ++.+++|++|++++|..
T Consensus 116 ~~~~------~~---------------------~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 116 DGAV------LS---------------------GNFFK--PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp BTHH------HH---------------------SSTTT--TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred Cccc------cC---------------------ccccc--CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 2100 00 01122 567888888888888544 43 77888888888888774
Q ss_pred ceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCC-CCCCccEEEEec
Q 045303 739 VVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPR-RLLLLETLDITS 817 (1206)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~-~l~~L~~L~l~~ 817 (1206)
....+..+.. -..++|+.|++++ +.+. .++. .+..
T Consensus 167 ~~~~~~~l~~----------------------------------l~~~~L~~L~l~~-n~l~-~~~~~~~~~-------- 202 (455)
T 3v47_A 167 KSICEEDLLN----------------------------------FQGKHFTLLRLSS-ITLQ-DMNEYWLGW-------- 202 (455)
T ss_dssp SCCCTTTSGG----------------------------------GTTCEEEEEECTT-CBCT-TCSTTCTTH--------
T ss_pred cccChhhhhc----------------------------------ccccccccccccc-Cccc-ccchhhccc--------
Confidence 4332222111 0125677777777 4555 2221 1100
Q ss_pred ccCccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCeEEEeccCC
Q 045303 818 CHQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKRLTIYWCHN 897 (1206)
Q Consensus 818 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~ 897 (1206)
.....+..+++|+.|++++|.+.......+... ...++|+.|++++|......
T Consensus 203 --~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~------------------- 255 (455)
T 3v47_A 203 --EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA------IAGTKIQSLILSNSYNMGSS------------------- 255 (455)
T ss_dssp --HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH------TTTCCEEEEECTTCTTTSCC-------------------
T ss_pred --cccccccccceeeeEecCCCcccccchhhhhcc------ccccceeeEeeccccccccc-------------------
Confidence 000112344566667776665332211111111 11245555555554322100
Q ss_pred CcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcCCCCcceeeec
Q 045303 898 LKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLDNTSLEEITIL 977 (1206)
Q Consensus 898 l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~ 977 (1206)
.+. ..+. .+....+ .....++|+.|+++
T Consensus 256 ----~~~----------------------------~~~~----------~~~~~~~----------~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 256 ----FGH----------------------------TNFK----------DPDNFTF----------KGLEASGVKTCDLS 283 (455)
T ss_dssp ----TTC----------------------------CSSC----------CCCTTTT----------GGGTTSCCCEEECC
T ss_pred ----cch----------------------------hhhc----------cCccccc----------ccccccCceEEEec
Confidence 000 0000 0000000 00112567788888
Q ss_pred cccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccC
Q 045303 978 NLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSF 1057 (1206)
Q Consensus 978 ~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 1057 (1206)
+|.+.+..|..+..+++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..
T Consensus 284 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 88888878888888999999999999888877888888899999999999888877888899999999999999887776
Q ss_pred CCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1058 PED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1058 ~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
|.. ..+++|++|++++|.+++ +|...+..+++|+.|++++
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHT 404 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCS
T ss_pred hhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccC
Confidence 654 778899999999999885 4544788889999999976
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=1.1e-26 Score=270.17 Aligned_cols=417 Identities=18% Similarity=0.159 Sum_probs=210.6
Q ss_pred ccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCcccCCcCccccCCc
Q 045303 523 LKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGR 602 (1206)
Q Consensus 523 l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~ 602 (1206)
..+|++|++++|.+..+|++++++++|++|++++|...+.+|.+++++++|+.+++.+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-------------------- 69 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-------------------- 69 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH--------------------
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh--------------------
Confidence 356666666666666666666666666666666654444555555555555555544432
Q ss_pred eEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCcc
Q 045303 603 FVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQ 682 (1206)
Q Consensus 603 ~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~ 682 (1206)
..+++.|++++|.+...+. -+++|+
T Consensus 70 ---------------------------------------------~~~l~~L~l~~~~l~~lp~----------~~~~L~ 94 (454)
T 1jl5_A 70 ---------------------------------------------DRQAHELELNNLGLSSLPE----------LPPHLE 94 (454)
T ss_dssp ---------------------------------------------HHTCSEEECTTSCCSCCCS----------CCTTCS
T ss_pred ---------------------------------------------ccCCCEEEecCCccccCCC----------CcCCCC
Confidence 0134555555555433211 135677
Q ss_pred EEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEe
Q 045303 683 ELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLS 762 (1206)
Q Consensus 683 ~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 762 (1206)
.|++++|.+..+|.. +++|+.|++++|.+..++.+. ++|++|++++|.... ++
T Consensus 95 ~L~l~~n~l~~lp~~-----~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~-lp------------------- 147 (454)
T 1jl5_A 95 SLVASCNSLTELPEL-----PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEK-LP------------------- 147 (454)
T ss_dssp EEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSS-CC-------------------
T ss_pred EEEccCCcCCccccc-----cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCC-Cc-------------------
Confidence 777777777766642 356777777777765554322 567777777665332 11
Q ss_pred ccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCCCCCccEEEEeccc--CccccccCCCCcceEEecCCC
Q 045303 763 FSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRLLLLETLDITSCH--QLLVTIQCLPALSELQIDGCK 840 (1206)
Q Consensus 763 l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~ 840 (1206)
..+.+++|++|++++ ++++ .+|..+++|++|++++|. .++ .+..+++|+.|++++|.
T Consensus 148 ------------------~~~~l~~L~~L~l~~-N~l~-~lp~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 148 ------------------ELQNSSFLKIIDVDN-NSLK-KLPDLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp ------------------CCTTCTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred ------------------ccCCCCCCCEEECCC-CcCc-ccCCCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 122356777777777 5666 466666677777777665 222 35566666666666664
Q ss_pred cceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCcccc
Q 045303 841 RVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSF 920 (1206)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 920 (1206)
+..+.. ..++|+.|++++|..
T Consensus 207 l~~l~~-------------~~~~L~~L~l~~n~l---------------------------------------------- 227 (454)
T 1jl5_A 207 LKKLPD-------------LPLSLESIVAGNNIL---------------------------------------------- 227 (454)
T ss_dssp CSSCCC-------------CCTTCCEEECCSSCC----------------------------------------------
T ss_pred CCcCCC-------------CcCcccEEECcCCcC----------------------------------------------
Confidence 332210 012333344333321
Q ss_pred ccccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeec
Q 045303 921 SATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWI 1000 (1206)
Q Consensus 921 ~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 1000 (1206)
+.++. ....++|+.|++++|.. ..++.. ..+|+.|++++|.+.+ +|.. +++|++|++
T Consensus 228 ---------------~~lp~-~~~l~~L~~L~l~~N~l-~~l~~~--~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 284 (454)
T 1jl5_A 228 ---------------EELPE-LQNLPFLTTIYADNNLL-KTLPDL--PPSLEALNVRDNYLTD-LPEL---PQSLTFLDV 284 (454)
T ss_dssp ---------------SSCCC-CTTCTTCCEEECCSSCC-SSCCSC--CTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred ---------------Ccccc-cCCCCCCCEEECCCCcC-Cccccc--ccccCEEECCCCcccc-cCcc---cCcCCEEEC
Confidence 11110 11123566666666533 233322 3789999999998765 5543 488999999
Q ss_pred cccCCcccccCCCCCCCCccEEEeccccCccccccccCCC-CccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCC
Q 045303 1001 GYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNL-TSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKP 1079 (1206)
Q Consensus 1001 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 1079 (1206)
++|.+.+ ++.. .++|+.|++++|.+.+ ++ .+ ++|++|++++|.+.+ +|. .+++|+.|++++|.++ .
T Consensus 285 s~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~--~~~~L~~L~L~~N~l~-~ 351 (454)
T 1jl5_A 285 SENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPA--LPPRLERLIASFNHLA-E 351 (454)
T ss_dssp CSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-C
T ss_pred cCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccc--cCCcCCEEECCCCccc-c
Confidence 9997665 2221 2689999999998775 22 23 589999999999876 554 3689999999999998 4
Q ss_pred CCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCCCCccc
Q 045303 1080 LPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQGLPKS 1159 (1206)
Q Consensus 1080 ~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~~~~ 1159 (1206)
+|. .+++|++|++++ +.+..+|..+..+..|.. +...+.++..+++|+.|++++|+ ++.+|. +|++
T Consensus 352 lp~----~l~~L~~L~L~~--N~l~~l~~ip~~l~~L~~-----n~~~~~i~~~~~~L~~L~ls~N~-l~~~~~--iP~s 417 (454)
T 1jl5_A 352 VPE----LPQNLKQLHVEY--NPLREFPDIPESVEDLRM-----NSHLAEVPELPQNLKQLHVETNP-LREFPD--IPES 417 (454)
T ss_dssp CCC----CCTTCCEEECCS--SCCSSCCCCCTTCCEEEC-----CC----------------------------------
T ss_pred ccc----hhhhccEEECCC--CCCCcCCCChHHHHhhhh-----cccccccccccCcCCEEECCCCc-CCcccc--chhh
Confidence 665 478999999976 566665554455555542 34445555567899999999994 555544 5778
Q ss_pred cceecccCChhh
Q 045303 1160 LLQLHIKGCPLI 1171 (1206)
Q Consensus 1160 L~~L~l~~c~~l 1171 (1206)
|+.|.+.+|...
T Consensus 418 l~~L~~~~~~~~ 429 (454)
T 1jl5_A 418 VEDLRMNSERVV 429 (454)
T ss_dssp ------------
T ss_pred HhheeCcCcccC
Confidence 999999887643
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=3.2e-26 Score=269.97 Aligned_cols=95 Identities=22% Similarity=0.340 Sum_probs=70.9
Q ss_pred CCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeec
Q 045303 499 LPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRN 578 (1206)
Q Consensus 499 ~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l 578 (1206)
+++|+.|+++++ .+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..++. ++++++|++|++
T Consensus 45 l~~l~~L~l~~~-~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCC-CCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCC-ccccChh-hcCCCCCCEEEC
Confidence 457888888888 7777774 7788888888888888888777 888888888888888 5555655 888888888888
Q ss_pred CCCCccccCCcccCCcCccccC
Q 045303 579 SNADELEEMPKGFGKLTCLLTL 600 (1206)
Q Consensus 579 ~~n~~~~~~p~~~~~l~~L~~L 600 (1206)
++|. +..++. +.++++|++|
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEE
T ss_pred CCCC-CCCChH-HcCCCCCCEE
Confidence 8887 444433 4444444444
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=1.5e-25 Score=264.19 Aligned_cols=76 Identities=25% Similarity=0.371 Sum_probs=62.3
Q ss_pred cCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecCCCCccccCCcccCCcCccccC
Q 045303 521 GNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTL 600 (1206)
Q Consensus 521 ~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 600 (1206)
..+.+|+.|+++++.+..+|. +..+++|++|++++| .+..+|. +..+++|++|++++|. +..++. ++++++|++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGL 117 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred hHhccccEEecCCCCCccCcc-hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCc-cccChh-hcCCCCCCEE
Confidence 457899999999999999985 889999999999999 6777766 9999999999999998 555544 6666665555
Q ss_pred C
Q 045303 601 G 601 (1206)
Q Consensus 601 ~ 601 (1206)
+
T Consensus 118 ~ 118 (466)
T 1o6v_A 118 T 118 (466)
T ss_dssp E
T ss_pred E
Confidence 3
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=5.9e-26 Score=268.12 Aligned_cols=364 Identities=16% Similarity=0.070 Sum_probs=226.6
Q ss_pred CceeEEEecCCCCcccC-CccccCccccceeeccccccc-cc-cccccccccccEEecCCCcccccccccccCCCcccee
Q 045303 500 PRLRVFSLCGYSNIFSL-PNEIGNLKHLRCLNLSRTRIQ-IL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 576 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~l-p~~~~~l~~L~~L~Ls~n~i~-~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L 576 (1206)
++|++|+|++| .+..+ |..|.++++|++|++++|.+. .+ |..|.++++|++|+|++|......|..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCC-ccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 67899999999 66655 678999999999999999886 55 5578999999999999996555568889999999999
Q ss_pred ecCCCCccccCCcc--cCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCccccccc-ccCCCCCCCc
Q 045303 577 RNSNADELEEMPKG--FGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEA-QLNNKVNLQA 653 (1206)
Q Consensus 577 ~l~~n~~~~~~p~~--~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~-~l~~l~~L~~ 653 (1206)
++++|.+...+|.. ++++++|++|++..+. +....+. .+..+++|++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~------------------------------l~~~~~~~~~~~l~~L~~ 158 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN------------------------------IKKIQPASFFLNMRRFHV 158 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB------------------------------CCSCCCCGGGGGCTTCCE
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCc------------------------------cCccCcccccCCCCcccE
Confidence 99999843333433 5555555555322211 0001111 1334444444
Q ss_pred eEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCC-CCCcCCCCCCCccEEEEcccCCCCCCC----------C
Q 045303 654 LSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKF-PSWLGDSSFSKLARLELRLCMSTSLPS----------V 722 (1206)
Q Consensus 654 L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~L~~~~~~~l~~----------l 722 (1206)
|++++|. +..+ |..+......+|+.|++++|.+..++. +
T Consensus 159 L~L~~n~------------------------------l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 208 (455)
T 3v47_A 159 LDLTFNK------------------------------VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208 (455)
T ss_dssp EECTTCC------------------------------BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCT
T ss_pred EeCCCCc------------------------------ccccChhhhhccccccccccccccCcccccchhhccccccccc
Confidence 4444443 3322 222221123567777777777644432 2
Q ss_pred CCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccC
Q 045303 723 GQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGT 802 (1206)
Q Consensus 723 ~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 802 (1206)
..+++|+.|++++|......+..+.. ....++|+.|++++|. +.+.
T Consensus 209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------~~~~~~L~~L~l~~~~-~~~~ 254 (455)
T 3v47_A 209 FKNTSITTLDLSGNGFKESMAKRFFD---------------------------------AIAGTKIQSLILSNSY-NMGS 254 (455)
T ss_dssp TTTCEEEEEECTTSCCCHHHHHHHHH---------------------------------HTTTCCEEEEECTTCT-TTSC
T ss_pred cccceeeeEecCCCcccccchhhhhc---------------------------------cccccceeeEeecccc-cccc
Confidence 34566777777766544333222211 0012566666666632 2211
Q ss_pred CCCCCCCccEEEEecccCccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCChhhhcccC
Q 045303 803 LPRRLLLLETLDITSCHQLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDSLTYIARIQ 882 (1206)
Q Consensus 803 lp~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 882 (1206)
... ...++.+... .+.+ ...++|+.|++++
T Consensus 255 ~~~-------------------~~~~~~~~~~-------------~~~~-------~~~~~L~~L~l~~----------- 284 (455)
T 3v47_A 255 SFG-------------------HTNFKDPDNF-------------TFKG-------LEASGVKTCDLSK----------- 284 (455)
T ss_dssp CTT-------------------CCSSCCCCTT-------------TTGG-------GTTSCCCEEECCS-----------
T ss_pred ccc-------------------hhhhccCccc-------------cccc-------ccccCceEEEecC-----------
Confidence 000 0000000000 0000 0011222222222
Q ss_pred CCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccccCCCCccccceEEecccCCcccc
Q 045303 883 LPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESL 962 (1206)
Q Consensus 883 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~ 962 (1206)
|......
T Consensus 285 -------------------------------------------------------------------------n~l~~~~ 291 (455)
T 3v47_A 285 -------------------------------------------------------------------------SKIFALL 291 (455)
T ss_dssp -------------------------------------------------------------------------SCCCEEC
T ss_pred -------------------------------------------------------------------------ccccccc
Confidence 2111111
Q ss_pred hhhc-CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCC
Q 045303 963 AERL-DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLT 1041 (1206)
Q Consensus 963 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 1041 (1206)
+..+ ..++|++|++++|.+.+..|..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..|..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 1111 125677777777777777777888899999999999988777777888899999999999999888888899999
Q ss_pred ccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCC
Q 045303 1042 SLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLP 1081 (1206)
Q Consensus 1042 ~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p 1081 (1206)
+|++|++++|.+.+..+.. ..+++|+.|++++|++++..|
T Consensus 372 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 372 NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999888755544 678999999999999987665
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=1.9e-25 Score=260.18 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=53.9
Q ss_pred CccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecCCCC
Q 045303 517 PNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 517 p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n~ 582 (1206)
+..++++++|++|++++|.++.+| .+..+++|++|++++| .+..+| ++.+++|++|++++|.
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~ 96 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK 96 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred ccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCC
Confidence 456788999999999999999887 6899999999999999 566665 8899999999999987
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=5.5e-24 Score=241.05 Aligned_cols=81 Identities=23% Similarity=0.399 Sum_probs=65.4
Q ss_pred ccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCcccee
Q 045303 497 NHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 576 (1206)
Q Consensus 497 ~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L 576 (1206)
..+++|++|++++| .+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|
T Consensus 41 ~~l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 41 EELESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHHTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEE
T ss_pred hhcccccEEEEeCC-ccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEE
Confidence 35678888888888 7777764 7888888888888888888777 888888888888888 566665 58888888888
Q ss_pred ecCCCC
Q 045303 577 RNSNAD 582 (1206)
Q Consensus 577 ~l~~n~ 582 (1206)
++++|.
T Consensus 116 ~l~~n~ 121 (347)
T 4fmz_A 116 YLNEDN 121 (347)
T ss_dssp ECTTSC
T ss_pred ECcCCc
Confidence 888887
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5e-23 Score=244.16 Aligned_cols=94 Identities=26% Similarity=0.324 Sum_probs=58.7
Q ss_pred eEEEecCCCCcccCCccccCccccceeeccccccccc-cccccccccccEEecCCCcccccccccccCCCccceeecCCC
Q 045303 503 RVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNSNA 581 (1206)
Q Consensus 503 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~~n 581 (1206)
+.++.+++ .+..+|..+. .+|++|+|++|.|+.+ |..|.++++|++|+|++|......|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRK-RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSC-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCC-CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 34555555 6667776554 5677777777777755 346777777777777777443444666777777777777777
Q ss_pred CccccCCcc-cCCcCccccC
Q 045303 582 DELEEMPKG-FGKLTCLLTL 600 (1206)
Q Consensus 582 ~~~~~~p~~-~~~l~~L~~L 600 (1206)
. +..+|.. |.++++|++|
T Consensus 91 ~-l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 91 R-LKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp C-CCSCCTTSSTTCTTCCEE
T ss_pred c-CCccCcccccCCCCCCEE
Confidence 6 4444432 3344443333
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=7.7e-23 Score=242.56 Aligned_cols=110 Identities=15% Similarity=0.060 Sum_probs=82.4
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
.+|++|++++|.+....+..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..|..|.++++|++|+|
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 35666777777665443356778888888888888777766667778888888888888888877888888888888888
Q ss_pred ecCCCCccCCCC-CCCCCcCeEEEeCcCCCC
Q 045303 1049 RGCPSVVSFPED-GFPTNLQSLEVRGLKISK 1078 (1206)
Q Consensus 1049 ~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~ 1078 (1206)
++|.+.+..+.. ..+++|+.|++++|.+..
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 888776644433 566788888888887763
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=8.9e-23 Score=234.84 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=66.0
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
++|++|++++|.+.+..|..+.++++|++|+|++|.+.+ ++..+..+++|++|+|++|.+. .+|..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 455666666666655556666677777777777775443 4445556677777777777655 34555666677777777
Q ss_pred ecCCCCccCCCCCCCCCcCeEEEeCcCCC
Q 045303 1049 RGCPSVVSFPEDGFPTNLQSLEVRGLKIS 1077 (1206)
Q Consensus 1049 ~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~ 1077 (1206)
++|++... + ...+++|+.|++++|.+.
T Consensus 326 ~~N~i~~~-~-~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 326 DHNSIVTL-K-LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSSCCCCC-C-CCTTCCCSEEECCSSCEE
T ss_pred CCCcccee-C-chhhccCCEEEcCCCCcc
Confidence 77766543 2 345566666666666654
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.5e-22 Score=246.03 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=76.0
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
++|+.|++++|.+.+..|..+.++++|++|+|++|.+.+ +|..+..+++|+.|+|++|.+. .+|..+..+++|++|+|
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 566677777777777777777788888888888876554 4556666778888888887766 45666777788888888
Q ss_pred ecCCCCccCCCCCCCCCcCeEEEeCcCCC
Q 045303 1049 RGCPSVVSFPEDGFPTNLQSLEVRGLKIS 1077 (1206)
Q Consensus 1049 ~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~ 1077 (1206)
++|.+.+. + ...+++|+.|++++|.+.
T Consensus 332 ~~N~l~~~-~-~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 332 DHNSIVTL-K-LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CSSCCCCC-C-CCTTCCCSEEECCSSCEE
T ss_pred CCCCCCCc-C-hhhcCCCCEEEeeCCCCC
Confidence 88877653 2 355677788888877765
No 42
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-22 Score=233.65 Aligned_cols=303 Identities=19% Similarity=0.149 Sum_probs=221.2
Q ss_pred CCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEecCCCCcccCC-ccccCccccceeecccccccccc-cccc
Q 045303 467 DVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIFSLP-NEIGNLKHLRCLNLSRTRIQILP-ESIN 544 (1206)
Q Consensus 467 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~~~ 544 (1206)
.+.+++.+.+.+... ..+++..|..+++|++|+|++| .+..++ ..|.++++|++|++++|.++.+| ..+.
T Consensus 43 ~l~~l~~l~l~~~~l-------~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-------RKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCEE-------SEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCch-------hhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 456777776655320 1234456788999999999999 676665 58899999999999999999765 4588
Q ss_pred ccccccEEecCCCccccccccc-ccCCCccceeecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCC
Q 045303 545 SLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLR 623 (1206)
Q Consensus 545 ~L~~L~~L~L~~n~~~~~lp~~-~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 623 (1206)
++++|++|++++| .+..+|.. |.++++|++|++++|.+....|..+.++++|++|++..+..
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l---------------- 177 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---------------- 177 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC----------------
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC----------------
Confidence 9999999999999 66677766 58899999999999984443445588888888885433221
Q ss_pred ceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCC
Q 045303 624 GTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSF 703 (1206)
Q Consensus 624 ~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~ 703 (1206)
.. ..+..+++|+.|++++|.+... ..+.+|+.|++++|.+..+|... +
T Consensus 178 --------------~~---~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~L~~L~l~~n~l~~~~~~~----~ 225 (390)
T 3o6n_A 178 --------------TH---VDLSLIPSLFHANVSYNLLSTL-----------AIPIAVEELDASHNSINVVRGPV----N 225 (390)
T ss_dssp --------------SB---CCGGGCTTCSEEECCSSCCSEE-----------ECCSSCSEEECCSSCCCEEECCC----C
T ss_pred --------------Cc---cccccccccceeeccccccccc-----------CCCCcceEEECCCCeeeeccccc----c
Confidence 00 0144567888888888876532 23568999999999888776643 5
Q ss_pred CCccEEEEcccCCCCCCCCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccc
Q 045303 704 SKLARLELRLCMSTSLPSVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDE 783 (1206)
Q Consensus 704 ~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 783 (1206)
++|+.|++++|.+..++.++.+++|++|++++|......+..+.. +++|+.|+++++. +..+.. ...
T Consensus 226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~~~------~~~ 292 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVALNL------YGQ 292 (390)
T ss_dssp SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECCSSC-CCEEEC------SSS
T ss_pred ccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc------cccCCEEECCCCc-CcccCc------ccC
Confidence 789999999999987888999999999999999877776666655 7888899888864 333221 234
Q ss_pred cCCcccEEeeccCcccccCCCC---CCCCccEEEEecccCccccccCCCCcceEEecCCCc
Q 045303 784 VFPKLRKLSLRHCDKLQGTLPR---RLLLLETLDITSCHQLLVTIQCLPALSELQIDGCKR 841 (1206)
Q Consensus 784 ~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 841 (1206)
.+++|+.|++++ |+++ .+|. .+++|++|++++|......+..+++|+.|++++|++
T Consensus 293 ~l~~L~~L~L~~-n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 293 PIPTLKVLDLSH-NHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCTTCCEEECCS-SCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CCCCCCEEECCC-Ccce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence 578888888888 5676 4553 356777777777775444566667777777777653
No 43
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=7.5e-22 Score=223.48 Aligned_cols=298 Identities=18% Similarity=0.154 Sum_probs=155.9
Q ss_pred cCCcccEEeeccCcccccCCC--CCCCCccEEEEecccC--ccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcC
Q 045303 784 VFPKLRKLSLRHCDKLQGTLP--RRLLLLETLDITSCHQ--LLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQN 859 (1206)
Q Consensus 784 ~~~~L~~L~l~~c~~l~~~lp--~~l~~L~~L~l~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 859 (1206)
.+++|++|++++ +.+. .+| ..+++|++|++++|.. ++. +..+++|++|++++|.+..+. .+.
T Consensus 42 ~l~~L~~L~l~~-~~i~-~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-----------~~~ 107 (347)
T 4fmz_A 42 ELESITKLVVAG-EKVA-SIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-----------ALQ 107 (347)
T ss_dssp HHTTCSEEECCS-SCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----------GGT
T ss_pred hcccccEEEEeC-Cccc-cchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-----------HHc
Confidence 477888888888 4555 444 3456677777776652 222 566666666666666543321 124
Q ss_pred CCCCcceeeeccCCChhhhcccCCCCCCCeEEEeccCCCcCCcCcccccccccCCCCccccccccceEEEeccCCccccc
Q 045303 860 SSTSLESLAIGRCDSLTYIARIQLPPSLKRLTIYWCHNLKSLTGEQDVCSSSSGCTSLTSFSATLEHLEVSSCSNLAFLT 939 (1206)
Q Consensus 860 ~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~l~~l~ 939 (1206)
.+++|++|++++|... .++.+..++
T Consensus 108 ~l~~L~~L~l~~n~i~-~~~~~~~l~------------------------------------------------------ 132 (347)
T 4fmz_A 108 NLTNLRELYLNEDNIS-DISPLANLT------------------------------------------------------ 132 (347)
T ss_dssp TCTTCSEEECTTSCCC-CCGGGTTCT------------------------------------------------------
T ss_pred CCCcCCEEECcCCccc-CchhhccCC------------------------------------------------------
Confidence 4455555555554321 111122222
Q ss_pred cCCCCccccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCc
Q 045303 940 RNGNLPQALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKL 1019 (1206)
Q Consensus 940 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 1019 (1206)
+|+.|++++|..+..++.....++|++|++++|......+ +..+++|++|++++|.+.+..+ +..+++|
T Consensus 133 -------~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 201 (347)
T 4fmz_A 133 -------KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSL 201 (347)
T ss_dssp -------TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTC
T ss_pred -------ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCcc
Confidence 3344444444333333333333555555555554433322 4455555566665554433222 4445555
Q ss_pred cEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecC
Q 045303 1020 TELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGG 1099 (1206)
Q Consensus 1020 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~ 1099 (1206)
+.|++++|.+.+..+ +..+++|++|++++|.+....+ ...+++|++|++++|.+++ ++ .+..+++|+.|++++
T Consensus 202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~- 274 (347)
T 4fmz_A 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGS- 274 (347)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCS-
T ss_pred ceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccC-
Confidence 566665555544332 5555556666666555544322 4455556666666655553 22 355555566666654
Q ss_pred CCCceecCC--CCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCCCCccccceecccCChh
Q 045303 1100 CPDLVSLPP--FPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQGLPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1100 ~~~l~~lp~--~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~~~~L~~L~l~~c~~ 1170 (1206)
+.+..++. .+++|+.|++.++......+..+..+++|+.|++++|+ ++.++....+++|+.|++++|+.
T Consensus 275 -n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 275 -NQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSKMDSADFANQVI 345 (347)
T ss_dssp -SCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTTCSEESSSCC--
T ss_pred -CccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhccceeehhhhcc
Confidence 23444432 23334444444333222222223568899999999995 66665555578899999999985
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.7e-21 Score=216.85 Aligned_cols=125 Identities=10% Similarity=-0.051 Sum_probs=84.7
Q ss_pred eeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCC
Q 045303 973 EITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCP 1052 (1206)
Q Consensus 973 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 1052 (1206)
+|++++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+. .+|..+..+++|++|++++|+
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 3334444444444455667777888888887776666666777788888888887766 567777788888888888887
Q ss_pred CCccCCCC-C------CCCCcCeEEEeCcCCC-CCCCccCCCCCCCcceEEeec
Q 045303 1053 SVVSFPED-G------FPTNLQSLEVRGLKIS-KPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1053 ~~~~~~~~-~------~~~~L~~L~Ls~n~l~-~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
+....+.. . ..+.|+.|++++|.+. ..++...|..+++|+.+++++
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc
Confidence 76543332 1 1467888899988876 123334788889999998876
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=4.1e-22 Score=242.17 Aligned_cols=303 Identities=19% Similarity=0.157 Sum_probs=224.8
Q ss_pred CCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEecCCCCcccCC-ccccCccccceeeccccccccccc-ccc
Q 045303 467 DVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIFSLP-NEIGNLKHLRCLNLSRTRIQILPE-SIN 544 (1206)
Q Consensus 467 ~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~-~~~ 544 (1206)
.+.+++.+.+.+.. ...+++.+|..+++|++|+|++| .+..+| ..|+.+++|++|+|++|.|+.+|. .|+
T Consensus 49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 34566666554432 12235566888999999999999 666665 589999999999999999997765 578
Q ss_pred ccccccEEecCCCccccccccc-ccCCCccceeecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCC
Q 045303 545 SLYNLHTILLEDCWKLKKLCKD-MGNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLR 623 (1206)
Q Consensus 545 ~L~~L~~L~L~~n~~~~~lp~~-~~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 623 (1206)
++++|++|+|++| .+..+|.. |+++++|++|++++|.+....|..++++++|++|++..+..
T Consensus 121 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l---------------- 183 (597)
T 3oja_B 121 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL---------------- 183 (597)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC----------------
T ss_pred CCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC----------------
Confidence 9999999999999 66677665 58999999999999985454555688899998885433211
Q ss_pred ceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCC
Q 045303 624 GTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSF 703 (1206)
Q Consensus 624 ~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~ 703 (1206)
.. ..+..+++|+.|++++|.+.. +..+.+|+.|++++|.+..+|..+ .
T Consensus 184 --------------~~---~~~~~l~~L~~L~l~~n~l~~-----------l~~~~~L~~L~ls~n~l~~~~~~~----~ 231 (597)
T 3oja_B 184 --------------TH---VDLSLIPSLFHANVSYNLLST-----------LAIPIAVEELDASHNSINVVRGPV----N 231 (597)
T ss_dssp --------------SB---CCGGGCTTCSEEECCSSCCSE-----------EECCTTCSEEECCSSCCCEEECSC----C
T ss_pred --------------CC---cChhhhhhhhhhhcccCcccc-----------ccCCchhheeeccCCccccccccc----C
Confidence 00 014456788888988887653 233568999999999888777654 4
Q ss_pred CCccEEEEcccCCCCCCCCCCCCCCceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccc
Q 045303 704 SKLARLELRLCMSTSLPSVGQLPFLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDE 783 (1206)
Q Consensus 704 ~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 783 (1206)
++|+.|++++|.+..++.++.+++|+.|+|++|......+..|.. +++|+.|+++++. +..+.. ..+
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~-l~~l~~------~~~ 298 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVALNL------YGQ 298 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTTSC-CCEEEC------SSS
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCCCC-CCCCCc------ccc
Confidence 689999999999987788999999999999999887777666655 7889999988864 333322 234
Q ss_pred cCCcccEEeeccCcccccCCCC---CCCCccEEEEecccCccccccCCCCcceEEecCCCc
Q 045303 784 VFPKLRKLSLRHCDKLQGTLPR---RLLLLETLDITSCHQLLVTIQCLPALSELQIDGCKR 841 (1206)
Q Consensus 784 ~~~~L~~L~l~~c~~l~~~lp~---~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~~~~ 841 (1206)
.+++|+.|++++ |.++ .+|. .+++|+.|++++|......+..+++|+.|++++|++
T Consensus 299 ~l~~L~~L~Ls~-N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 299 PIPTLKVLDLSH-NHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCTTCCEEECCS-SCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred cCCCCcEEECCC-CCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 578888888888 5676 5663 457777888877775555566677777777777753
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=8.4e-21 Score=212.73 Aligned_cols=113 Identities=10% Similarity=0.042 Sum_probs=72.0
Q ss_pred ccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC----
Q 045303 985 LPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED---- 1060 (1206)
Q Consensus 985 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~---- 1060 (1206)
.+..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+. .+|..+..+++|++|++++|++.+..+..
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~ 286 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence 3444556666777777777665555556666677777777777655 45666777777777777777665543322
Q ss_pred ---CCCCCcCeEEEeCcCCCC-CCCccCCCCCCCcceEEeec
Q 045303 1061 ---GFPTNLQSLEVRGLKISK-PLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1061 ---~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
...+.|+.|++++|.+.. .++...|..+.+|+.+++++
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 123677788888887752 23334677888888888865
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.3e-20 Score=209.12 Aligned_cols=242 Identities=18% Similarity=0.167 Sum_probs=170.1
Q ss_pred ceeEEEecCCCCcccCCccccCccccceeeccccccccccc-cccccccccEEecCCCcccccccccccCCCccceeecC
Q 045303 501 RLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNS 579 (1206)
Q Consensus 501 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 579 (1206)
++++++++++ .+..+|..+. ++|++|++++|.|+.+|. .|.++++|++|++++|......|..|+.+++|++|+++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788888888 7788887664 688889999888887765 68888889999998884444447788888899999998
Q ss_pred CCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeec
Q 045303 580 NADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWS 659 (1206)
Q Consensus 580 ~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 659 (1206)
+|. +..+|..+. ++|++|++..+ .+.......+..+++|+.|++++|
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l~~n------------------------------~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRVHEN------------------------------EITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEECCSS------------------------------CCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCc-CCccChhhc--ccccEEECCCC------------------------------cccccCHhHhcCCccccEEECCCC
Confidence 888 667776654 45666533221 122233445777888888888888
Q ss_pred CCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC--CCCCCCCCceeeecCCC
Q 045303 660 ARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP--SVGQLPFLKELDISGMD 737 (1206)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~ 737 (1206)
.+.... .....+..+++|+.|++++|.+..+|..+ +++|+.|++++|.+..++ .++.+++|+.|++++|.
T Consensus 156 ~l~~~~----~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 227 (330)
T 1xku_A 156 PLKSSG----IENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227 (330)
T ss_dssp CCCGGG----BCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC
T ss_pred cCCccC----cChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 764311 11223455778899999998888888765 378999999999885543 58888999999999888
Q ss_pred CceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccc
Q 045303 738 GVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQ 800 (1206)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 800 (1206)
........+.. +++|+.|+++++.. ..+. .....+++|+.|++++ |.++
T Consensus 228 l~~~~~~~~~~------l~~L~~L~L~~N~l-~~lp------~~l~~l~~L~~L~l~~-N~i~ 276 (330)
T 1xku_A 228 ISAVDNGSLAN------TPHLRELHLNNNKL-VKVP------GGLADHKYIQVVYLHN-NNIS 276 (330)
T ss_dssp CCEECTTTGGG------STTCCEEECCSSCC-SSCC------TTTTTCSSCCEEECCS-SCCC
T ss_pred CceeChhhccC------CCCCCEEECCCCcC-ccCC------hhhccCCCcCEEECCC-CcCC
Confidence 76655444443 67777777777642 2211 1234467777777777 5666
No 48
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=1.4e-20 Score=209.33 Aligned_cols=186 Identities=23% Similarity=0.361 Sum_probs=128.0
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
....+++|+|++| .+..+|..+.++++|++|+|++|.++.+|..+.++++|++|+|++| .+..+|..++++++|++|+
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 4688999999999 8889999999999999999999999999999999999999999999 6669999999999999999
Q ss_pred cCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEe
Q 045303 578 NSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLE 657 (1206)
Q Consensus 578 l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 657 (1206)
+++|+....+|..++... ....+.++++|+.|+++
T Consensus 157 L~~n~~~~~~p~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~L~ 191 (328)
T 4fcg_A 157 IRACPELTELPEPLASTD---------------------------------------------ASGEHQGLVNLQSLRLE 191 (328)
T ss_dssp EEEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEE
T ss_pred CCCCCCccccChhHhhcc---------------------------------------------chhhhccCCCCCEEECc
Confidence 999887777776543210 01123445566666666
Q ss_pred ecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCC-CCCC-CCCCCCCCceeeecC
Q 045303 658 WSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMS-TSLP-SVGQLPFLKELDISG 735 (1206)
Q Consensus 658 ~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~-~~l~-~l~~l~~L~~L~L~~ 735 (1206)
+|.+...+ ..+..+++|+.|++++|.+..+|..+. .+++|+.|++++|.+ ..+| .++.+++|+.|++++
T Consensus 192 ~n~l~~lp-------~~l~~l~~L~~L~L~~N~l~~l~~~l~--~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 192 WTGIRSLP-------ASIANLQNLKSLKIRNSPLSALGPAIH--HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp EECCCCCC-------GGGGGCTTCCEEEEESSCCCCCCGGGG--GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred CCCcCcch-------HhhcCCCCCCEEEccCCCCCcCchhhc--cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 66544221 122334455555555555555554443 345555555555544 3333 344555555555555
Q ss_pred CCCc
Q 045303 736 MDGV 739 (1206)
Q Consensus 736 ~~~~ 739 (1206)
|...
T Consensus 263 n~~~ 266 (328)
T 4fcg_A 263 CSNL 266 (328)
T ss_dssp CTTC
T ss_pred CCch
Confidence 4433
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3e-20 Score=208.25 Aligned_cols=241 Identities=17% Similarity=0.157 Sum_probs=174.9
Q ss_pred ceeEEEecCCCCcccCCccccCccccceeecccccccccc-ccccccccccEEecCCCcccccccccccCCCccceeecC
Q 045303 501 RLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNS 579 (1206)
Q Consensus 501 ~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 579 (1206)
++++++++++ .+..+|..+. ++|++|++++|.|+.++ ..|.++++|++|++++|......|..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6889999998 8888997764 78999999999999774 578999999999999995444557889999999999999
Q ss_pred CCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeec
Q 045303 580 NADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWS 659 (1206)
Q Consensus 580 ~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 659 (1206)
+|. +..+|..+. ++|++|++..+. +.......+..+++|+.|++++|
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n~------------------------------i~~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDNR------------------------------IRKVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSSC------------------------------CCCCCSGGGSSCSSCCEEECCSC
T ss_pred CCc-CCccCcccc--ccCCEEECCCCc------------------------------cCccCHhHhCCCccCCEEECCCC
Confidence 998 678887665 667776433211 12223445778889999999988
Q ss_pred CCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC--CCCCCCCCceeeecCCC
Q 045303 660 ARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP--SVGQLPFLKELDISGMD 737 (1206)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~--~l~~l~~L~~L~L~~~~ 737 (1206)
.+.... .....+..+ +|+.|++++|.+..+|..+. ++|+.|++++|.+..++ .+..+++|+.|++++|.
T Consensus 158 ~l~~~~----~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~----~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 158 PLENSG----FEPGAFDGL-KLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ 228 (332)
T ss_dssp CCBGGG----SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC----SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC
T ss_pred ccccCC----CCcccccCC-ccCEEECcCCCCCccCcccc----CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 764311 112234444 88899999998888887653 68999999999985554 58889999999999887
Q ss_pred CceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccc
Q 045303 738 GVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQ 800 (1206)
Q Consensus 738 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 800 (1206)
.....+..+.. +++|+.|+++++.. ..+.. ....+++|+.|++++ |.++
T Consensus 229 l~~~~~~~~~~------l~~L~~L~L~~N~l-~~lp~------~l~~l~~L~~L~l~~-N~l~ 277 (332)
T 2ft3_A 229 IRMIENGSLSF------LPTLRELHLDNNKL-SRVPA------GLPDLKLLQVVYLHT-NNIT 277 (332)
T ss_dssp CCCCCTTGGGG------CTTCCEEECCSSCC-CBCCT------TGGGCTTCCEEECCS-SCCC
T ss_pred CCcCChhHhhC------CCCCCEEECCCCcC-eecCh------hhhcCccCCEEECCC-CCCC
Confidence 66655444443 67777777776532 22211 234567777777777 5666
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.6e-21 Score=238.84 Aligned_cols=210 Identities=18% Similarity=0.181 Sum_probs=103.5
Q ss_pred HHHhccCCceeEEEecCCCCcc---cCCcccc------------Cccccceeeccccccc-ccccccccc--ccccEEec
Q 045303 493 KMLLNHLPRLRVFSLCGYSNIF---SLPNEIG------------NLKHLRCLNLSRTRIQ-ILPESINSL--YNLHTILL 554 (1206)
Q Consensus 493 ~~~~~~~~~L~~L~L~~~~~~~---~lp~~~~------------~l~~L~~L~Ls~n~i~-~lp~~~~~L--~~L~~L~L 554 (1206)
+..+..+++|+.|+|++|.... .+|..++ .+++|++|+|++|.++ ..+..+..+ .+|++|+|
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 3445566667777776653221 2222222 5667777777777665 233344442 33777777
Q ss_pred CCCcccc--cccccccCCCccceeecCCCCcccc----CCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEE
Q 045303 555 EDCWKLK--KLCKDMGNLTKLRHLRNSNADELEE----MPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEI 628 (1206)
Q Consensus 555 ~~n~~~~--~lp~~~~~L~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~ 628 (1206)
++|.... .++..+..+++|++|++++|.+... ++..+..+++|++|++..+..
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~--------------------- 204 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF--------------------- 204 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC---------------------
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC---------------------
Confidence 7764221 1222234667777777777753221 111123344444442211100
Q ss_pred ecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCC----CCCCCcCCCCCC
Q 045303 629 SKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGT----KFPSWLGDSSFS 704 (1206)
Q Consensus 629 ~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~p~~~~~~~~~ 704 (1206)
... ........+..+++|+.|++++|.+.... ..+..+++|+.|.++++... ..+..+. .++
T Consensus 205 ---~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~~~ 270 (592)
T 3ogk_B 205 ---AKI--SPKDLETIARNCRSLVSVKVGDFEILELV-------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLV--FPR 270 (592)
T ss_dssp ---SSC--CHHHHHHHHHHCTTCCEEECSSCBGGGGH-------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCC--CCT
T ss_pred ---Ccc--CHHHHHHHHhhCCCCcEEeccCccHHHHH-------HHHhhhhHHHhhcccccccccchHHHHHHhh--ccc
Confidence 000 00111223445667777777766543321 11223467777777654322 1122222 456
Q ss_pred CccEEEEcccCCCCCC-CCCCCCCCceeeecCCC
Q 045303 705 KLARLELRLCMSTSLP-SVGQLPFLKELDISGMD 737 (1206)
Q Consensus 705 ~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L~~~~ 737 (1206)
+|+.|.+.++....++ .+..+++|++|++++|.
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 7777777665444444 34566677777777666
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=8.9e-21 Score=209.77 Aligned_cols=224 Identities=12% Similarity=0.039 Sum_probs=155.4
Q ss_pred ccccceEEecc-cCCcccchhhc-CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEE
Q 045303 945 PQALKYLGVES-CSKLESLAERL-DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTEL 1022 (1206)
Q Consensus 945 ~~~L~~L~l~~-~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 1022 (1206)
.++|++|++++ +.....+|..+ ..++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..+++|++|
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 34677777774 44443444433 35778888888887777777777888888888888887777777777777888888
Q ss_pred EeccccCccccccccCCCC-ccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCC
Q 045303 1023 TIWDCENLKALPNCMHNLT-SLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGC 1100 (1206)
Q Consensus 1023 ~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~ 1100 (1206)
++++|.+.+.+|..+..++ +|++|++++|.+.+.+|.. ..+. |+.|++++|.+++..|. .+..+++|+.|++++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~-- 230 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAK-- 230 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEECCS--
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEECCC--
Confidence 8888887777777777777 7888888888777666654 3444 88888888887766555 677788888888865
Q ss_pred CCceecCCCCCCCcceeeccCCCCcccc---CCCCCcCcccccccccCCCCCCCCCCCCccccceecccCChhhH
Q 045303 1101 PDLVSLPPFPASLTGLEISDMPDLECLS---SIGENLTSLKYLYLIDCPKLKYFPEQGLPKSLLQLHIKGCPLIE 1172 (1206)
Q Consensus 1101 ~~l~~lp~~~~~L~~L~~~~~~~~~~~~---~~~~~l~~L~~L~l~~n~~l~~l~~~~~~~~L~~L~l~~c~~l~ 1172 (1206)
+.+...++.+..+..|...+++++.+.+ ..+..+++|+.|++++|+....+|...-+++|+.|++++||.++
T Consensus 231 N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp SEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred CceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence 3444333323333444444444444433 33357788999999999655578876667889999999998654
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=7.2e-19 Score=210.22 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=63.4
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecC
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNS 579 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 579 (1206)
.++++|++++| .+..+|..+. ++|++|++++|.|+.+|. .+++|++|+|++| .+..+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECc
Confidence 46899999999 8889998776 899999999999999988 5789999999999 6777776 77889999998
Q ss_pred CCC
Q 045303 580 NAD 582 (1206)
Q Consensus 580 ~n~ 582 (1206)
+|.
T Consensus 110 ~N~ 112 (622)
T 3g06_A 110 SNP 112 (622)
T ss_dssp SCC
T ss_pred CCc
Confidence 887
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=5.5e-20 Score=203.44 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=122.7
Q ss_pred CCcceeeeccccCcCcccccccCCC-ccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLH-HLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLD 1047 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 1047 (1206)
++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..++ |++|++++|.+.+..|..|..+++|++|+
T Consensus 149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 227 (313)
T 1ogq_A 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIH 227 (313)
T ss_dssp TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEE
Confidence 6777888888887777888888887 888888888887777777777766 88888888888888888888888888888
Q ss_pred eecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCce-ecCCCCCCCcceeeccCCCCcc
Q 045303 1048 IRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLV-SLPPFPASLTGLEISDMPDLEC 1126 (1206)
Q Consensus 1048 L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~-~lp~~~~~L~~L~~~~~~~~~~ 1126 (1206)
+++|.+.+.++....+++|++|++++|.+++.+|. .+..+++|+.|++++ +.+. .+|.
T Consensus 228 L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~--N~l~~~ip~------------------ 286 (313)
T 1ogq_A 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSF--NNLCGEIPQ------------------ 286 (313)
T ss_dssp CCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCS--SEEEEECCC------------------
T ss_pred CCCCceeeecCcccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcC--CcccccCCC------------------
Confidence 88888877776667778888888888888877776 577888888888876 3333 3332
Q ss_pred ccCCCCCcCcccccccccCCCCCCCC
Q 045303 1127 LSSIGENLTSLKYLYLIDCPKLKYFP 1152 (1206)
Q Consensus 1127 ~~~~~~~l~~L~~L~l~~n~~l~~l~ 1152 (1206)
. ..+++|+.|++++|+.+...|
T Consensus 287 ---~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 287 ---G-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp ---S-TTGGGSCGGGTCSSSEEESTT
T ss_pred ---C-ccccccChHHhcCCCCccCCC
Confidence 1 367888888899888666544
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.79 E-value=2.1e-21 Score=229.58 Aligned_cols=91 Identities=19% Similarity=0.086 Sum_probs=58.9
Q ss_pred ccccccCCCccceeeccccCCcccccCCC----C-CCCCccEEEeccccCcc----ccccccCCCCccCeeeeecCCCCc
Q 045303 985 LPAGLHNLHHLQKIWIGYCPNLESFPEEG----L-PSTKLTELTIWDCENLK----ALPNCMHNLTSLLDLDIRGCPSVV 1055 (1206)
Q Consensus 985 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~-~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~ 1055 (1206)
++..+..+++|++|+|++|.+....+..+ . ..++|++|+|++|.+.+ .+|..+..+++|++|++++|++..
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 34455667788888888886554322221 1 25688888888887765 667777778888888888887654
Q ss_pred c--------CCCCCCCCCcCeEEEeCcCCC
Q 045303 1056 S--------FPEDGFPTNLQSLEVRGLKIS 1077 (1206)
Q Consensus 1056 ~--------~~~~~~~~~L~~L~Ls~n~l~ 1077 (1206)
. ++ .....|+.|++.++...
T Consensus 413 ~~~~~l~~~l~--~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 413 AGILQLVESVR--QPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHHHHHHHT--STTCCCCEEECTTCCCC
T ss_pred HHHHHHHHHhc--cCCcchhheeecccccC
Confidence 3 11 12345677766666554
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=6.8e-19 Score=195.75 Aligned_cols=215 Identities=22% Similarity=0.312 Sum_probs=142.0
Q ss_pred cccceEEecccCCcccchh-hcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEe
Q 045303 946 QALKYLGVESCSKLESLAE-RLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTI 1024 (1206)
Q Consensus 946 ~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1024 (1206)
..++.|++++|..- .+|. ....++|++|++++|.+. .+|..+.++++|++|+|++|.+. .+|..+..+++|++|+|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 35666666665533 3333 333577777777777766 67777777777888888777655 56667777777888888
Q ss_pred ccccCccccccccCC---------CCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceE
Q 045303 1025 WDCENLKALPNCMHN---------LTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRF 1094 (1206)
Q Consensus 1025 ~~n~~~~~~p~~~~~---------l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L 1094 (1206)
++|+..+.+|..+.. +++|++|++++|.+. .+|.. ..+++|++|++++|.+++ +|. .+..+++|++|
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~-~l~~l~~L~~L 234 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP-AIHHLPKLEEL 234 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCG-GGGGCTTCCEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-Cch-hhccCCCCCEE
Confidence 777777777766543 777888888877766 34433 667777888888877774 444 47777778888
Q ss_pred EeecCCCCceecCCCCCCCc---ceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCC-CCccccceecccC
Q 045303 1095 TICGGCPDLVSLPPFPASLT---GLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQ-GLPKSLLQLHIKG 1167 (1206)
Q Consensus 1095 ~ls~~~~~l~~lp~~~~~L~---~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~-~~~~~L~~L~l~~ 1167 (1206)
++++ |+....+|..+..+. .|++.+|......+.....+++|+.|++++|+.++.+|.. +-+++|+.+++..
T Consensus 235 ~Ls~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 235 DLRG-CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp ECTT-CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred ECcC-CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 8876 556666666444433 3333333333333333457788888888888888888863 3366677776663
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1.7e-22 Score=238.93 Aligned_cols=137 Identities=18% Similarity=0.072 Sum_probs=68.8
Q ss_pred cccccCCCccceeeccccCCcccccCC-----CCCCCCccEEEeccccCccc----cccccCCCCccCeeeeecCCCCcc
Q 045303 986 PAGLHNLHHLQKIWIGYCPNLESFPEE-----GLPSTKLTELTIWDCENLKA----LPNCMHNLTSLLDLDIRGCPSVVS 1056 (1206)
Q Consensus 986 ~~~~~~l~~L~~L~L~~n~~~~~~~~~-----~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~~~~~ 1056 (1206)
+..+..+++|++|++++|.+....+.. ..+.++|++|++++|.+.+. ++..+..+++|++|++++|.+.+.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 333444555666666666443221111 11224666666666665543 344455566666666666655432
Q ss_pred CCCC------CCCCCcCeEEEeCcCCCC----CCCccCCCCCCCcceEEeecCCCCce---------ecCCCCCCCccee
Q 045303 1057 FPED------GFPTNLQSLEVRGLKISK----PLPEWGFNRFTSLRRFTICGGCPDLV---------SLPPFPASLTGLE 1117 (1206)
Q Consensus 1057 ~~~~------~~~~~L~~L~Ls~n~l~~----~~p~~~~~~l~~L~~L~ls~~~~~l~---------~lp~~~~~L~~L~ 1117 (1206)
.+.. ...++|+.|++++|.+++ .+|. .+..+++|++|++++| .++ .+|.....|+.|.
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~N--~i~~~~~~~l~~~l~~~~~~L~~L~ 433 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSNN--CLGDAGILQLVESVRQPGCLLEQLV 433 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCSS--SCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCCC--CCCHHHHHHHHHHhccCCcchhhee
Confidence 1111 114566666666666653 3443 4555666777777652 222 1333344556666
Q ss_pred eccCCCCc
Q 045303 1118 ISDMPDLE 1125 (1206)
Q Consensus 1118 ~~~~~~~~ 1125 (1206)
+.+++...
T Consensus 434 ~~~~~~~~ 441 (461)
T 1z7x_W 434 LYDIYWSE 441 (461)
T ss_dssp CTTCCCCH
T ss_pred ecccccCH
Confidence 55555443
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.77 E-value=7.5e-21 Score=232.80 Aligned_cols=78 Identities=14% Similarity=0.160 Sum_probs=47.6
Q ss_pred EEEecCCCCcccCCccccCccccceeecccccc----ccccccc------------cccccccEEecCCCcccccccccc
Q 045303 504 VFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRI----QILPESI------------NSLYNLHTILLEDCWKLKKLCKDM 567 (1206)
Q Consensus 504 ~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i----~~lp~~~------------~~L~~L~~L~L~~n~~~~~lp~~~ 567 (1206)
.+.+..+ .....+..+..+++|++|+++++.. ..+|..+ ..+++|++|+|++|......+..+
T Consensus 54 ~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l 132 (592)
T 3ogk_B 54 HVTMALC-YTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL 132 (592)
T ss_dssp EEEESCG-GGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEEEeec-cccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH
Confidence 4445544 2222234567788899999987532 1233222 267888888888885444444555
Q ss_pred cCC--CccceeecCCCC
Q 045303 568 GNL--TKLRHLRNSNAD 582 (1206)
Q Consensus 568 ~~L--~~L~~L~l~~n~ 582 (1206)
..+ .+|++|++++|.
T Consensus 133 ~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 133 AKARADDLETLKLDKCS 149 (592)
T ss_dssp HHHHGGGCCEEEEESCE
T ss_pred HHhccccCcEEECcCCC
Confidence 553 348888888775
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=6.8e-18 Score=197.83 Aligned_cols=222 Identities=17% Similarity=0.130 Sum_probs=166.8
Q ss_pred CCccccceEEecccCCcccchhhc-CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccE
Q 045303 943 NLPQALKYLGVESCSKLESLAERL-DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTE 1021 (1206)
Q Consensus 943 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 1021 (1206)
.+|++++.|++++|......+..+ ..++|++|++++|.+.+..+..|.++++|++|+|++|.+....+..+..+++|++
T Consensus 72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 456788888888876555444433 4588999999998887777788888999999999998777666666888889999
Q ss_pred EEeccccCccccccccCCCCccCeeeeecCCCCccCCCC--CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecC
Q 045303 1022 LTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGG 1099 (1206)
Q Consensus 1022 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~ 1099 (1206)
|+|++|.+....+..|.++++|++|++++|+..+.++.. ..+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~~L~Ls~- 227 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP--NLTPLVGLEELEMSG- 227 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC--CCTTCTTCCEEECTT-
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc--cccccccccEEECcC-
Confidence 999998888766778888999999999987766666653 678889999999998874 45 477888999999976
Q ss_pred CCCceecC-CCCCCCcceeeccCCCCcc---ccCCCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCChh
Q 045303 1100 CPDLVSLP-PFPASLTGLEISDMPDLEC---LSSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1100 ~~~l~~lp-~~~~~L~~L~~~~~~~~~~---~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~~ 1170 (1206)
+.+..++ ..+..+..|...+++++.+ .+..+..+++|+.|++++| .++.+|...+ +++|+.|++++||.
T Consensus 228 -N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 228 -NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp -SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred -CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCCc
Confidence 5566554 3444444444444444443 3444567899999999999 6788876543 67899999999874
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=8.9e-18 Score=196.08 Aligned_cols=222 Identities=16% Similarity=0.119 Sum_probs=162.2
Q ss_pred CCccccceEEecccCCcccchhh-cCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccE
Q 045303 943 NLPQALKYLGVESCSKLESLAER-LDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTE 1021 (1206)
Q Consensus 943 ~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 1021 (1206)
.++++++.|++++|..-...+.. ...++|++|++++|.+....+..|.++++|++|+|++|.+.+..+..+..+++|++
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 45567888888877654443333 33578888888888877766777888888888888888776666667788888888
Q ss_pred EEeccccCccccccccCCCCccCeeeeecCCCCccCCCC--CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecC
Q 045303 1022 LTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGG 1099 (1206)
Q Consensus 1022 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~ 1099 (1206)
|+|++|.+....+..|.++++|++|++++|+..+.++.. ..+++|++|++++|.++ .+| .+..+++|+.|+|++
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~--~~~~l~~L~~L~Ls~- 216 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP--NLTPLIKLDELDLSG- 216 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC--CCTTCSSCCEEECTT-
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc--ccCCCcccCEEECCC-
Confidence 888888887766777888888888888887666666543 66788888888888887 455 377888888888876
Q ss_pred CCCceec-CCCCCCCcceeeccCCCCccc---cCCCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCChh
Q 045303 1100 CPDLVSL-PPFPASLTGLEISDMPDLECL---SSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1100 ~~~l~~l-p~~~~~L~~L~~~~~~~~~~~---~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~~ 1170 (1206)
+.+..+ |..+..+..|...+++++.+. +..+..+++|+.|++++| .++.++...+ +++|+.|++++||.
T Consensus 217 -N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 217 -NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp -SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred -CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCCc
Confidence 456666 345555544444444444433 334567899999999999 6777776443 67899999998885
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=1e-17 Score=185.45 Aligned_cols=54 Identities=30% Similarity=0.300 Sum_probs=40.9
Q ss_pred cEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCC--CCCCCCCceeeecCCCCc
Q 045303 682 QELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPS--VGQLPFLKELDISGMDGV 739 (1206)
Q Consensus 682 ~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~--l~~l~~L~~L~L~~~~~~ 739 (1206)
+.++++++.+..+|..+ .++|++|++++|.++.+|. ++.+++|++|++++|...
T Consensus 10 ~~l~c~~~~l~~ip~~~----~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~ 65 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI----PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65 (306)
T ss_dssp TEEECCSSCCSSCCSCC----CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CEEEcCCCCcccCCCCC----CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC
Confidence 45667777777888755 3688899999988876663 788888888888887643
No 61
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=4.1e-17 Score=195.04 Aligned_cols=237 Identities=19% Similarity=0.110 Sum_probs=148.7
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeecC
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRNS 579 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l~ 579 (1206)
++|++|+|++| .+..+|. .+++|++|+|++|.|+.+|. .+++|++|++++| .+..+|. .+++|+.|+++
T Consensus 61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN-PLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC-CCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC-cCCCCCC---CCCCcCEEECC
Confidence 68999999999 7888887 57899999999999999987 6789999999999 6777776 67889999999
Q ss_pred CCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeec
Q 045303 580 NADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWS 659 (1206)
Q Consensus 580 ~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n 659 (1206)
+|. +..+|..+ ++|++| ++++|
T Consensus 130 ~N~-l~~lp~~l---~~L~~L------------------------------------------------------~Ls~N 151 (622)
T 3g06_A 130 GNQ-LTSLPVLP---PGLQEL------------------------------------------------------SVSDN 151 (622)
T ss_dssp SSC-CSCCCCCC---TTCCEE------------------------------------------------------ECCSS
T ss_pred CCC-CCcCCCCC---CCCCEE------------------------------------------------------ECcCC
Confidence 988 56666532 334444 33333
Q ss_pred CCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCCCc
Q 045303 660 ARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMDGV 739 (1206)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~~~ 739 (1206)
.+...+. .+.+|+.|++++|.+..+|. .+++|+.|++++|.+..+|.. +++|+.|++++|...
T Consensus 152 ~l~~l~~----------~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 152 QLASLPA----------LPSELCKLWAYNNQLTSLPM-----LPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLT 214 (622)
T ss_dssp CCSCCCC----------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS
T ss_pred cCCCcCC----------ccCCCCEEECCCCCCCCCcc-----cCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCccc
Confidence 3221100 12344444444444444441 234555555555555444421 245555555554433
Q ss_pred eeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCCCCCccEEEEeccc
Q 045303 740 VSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRRLLLLETLDITSCH 819 (1206)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~l~~L~~L~l~~~~ 819 (1206)
.... .+++|+.|++++|. +..+. ..+++|+.|++++ |+++ .+|..+++|+.|++++|.
T Consensus 215 ~l~~----------~~~~L~~L~Ls~N~-L~~lp---------~~l~~L~~L~Ls~-N~L~-~lp~~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 215 SLPA----------LPSGLKELIVSGNR-LTSLP---------VLPSELKELMVSG-NRLT-SLPMLPSGLLSLSVYRNQ 272 (622)
T ss_dssp SCCC----------CCTTCCEEECCSSC-CSCCC---------CCCTTCCEEECCS-SCCS-CCCCCCTTCCEEECCSSC
T ss_pred ccCC----------CCCCCCEEEccCCc-cCcCC---------CCCCcCcEEECCC-CCCC-cCCcccccCcEEeCCCCC
Confidence 2110 03455555555442 11110 2356777777777 5777 677777778888887776
Q ss_pred --CccccccCCCCcceEEecCCCccee
Q 045303 820 --QLLVTIQCLPALSELQIDGCKRVVF 844 (1206)
Q Consensus 820 --~~~~~~~~l~~L~~L~l~~~~~~~~ 844 (1206)
.++..+..+++|+.|++++|.+...
T Consensus 273 L~~lp~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 273 LTRLPESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp CCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred CCcCCHHHhhccccCEEEecCCCCCCc
Confidence 4555677788888888888875543
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=188.55 Aligned_cols=266 Identities=18% Similarity=0.182 Sum_probs=149.4
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccc-cccccccccEEecCCCcccccccccccCCCcccee
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHL 576 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L 576 (1206)
.|+...+.+++++ .+..+|..+. ++|++|++++|.|+.+|. .+.++++|++|++++|......|..|.++++|++|
T Consensus 29 ~C~~~~~c~~~~~-~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSG-SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCST-TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCC-Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3444456777777 7888887665 478888888888887765 67888888888888884333345568888888888
Q ss_pred ecCCCCccccCCcc-cCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceE
Q 045303 577 RNSNADELEEMPKG-FGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALS 655 (1206)
Q Consensus 577 ~l~~n~~~~~~p~~-~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 655 (1206)
++++|. +..+|.. ++++++|++| +
T Consensus 106 ~Ls~n~-l~~~~~~~~~~l~~L~~L------------------------------------------------------~ 130 (353)
T 2z80_A 106 DLSYNY-LSNLSSSWFKPLSSLTFL------------------------------------------------------N 130 (353)
T ss_dssp ECCSSC-CSSCCHHHHTTCTTCSEE------------------------------------------------------E
T ss_pred ECCCCc-CCcCCHhHhCCCccCCEE------------------------------------------------------E
Confidence 888887 4455543 4444444444 2
Q ss_pred EeecCCCcchhhHHHHhhcCCCCCCccEEEEEecC-CCCCC-CCcCCCCCCCccEEEEcccCCCCC--CCCCCCCCCcee
Q 045303 656 LEWSARSERCEFEADVLRMLKPHRDVQELTITGYG-GTKFP-SWLGDSSFSKLARLELRLCMSTSL--PSVGQLPFLKEL 731 (1206)
Q Consensus 656 l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p-~~~~~~~~~~L~~L~L~~~~~~~l--~~l~~l~~L~~L 731 (1206)
+++|.+..... ...+..+++|+.|++++|. ...++ ..+. .+++|+.|++++|.+..+ ..++.+++|++|
T Consensus 131 L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 203 (353)
T 2z80_A 131 LLGNPYKTLGE-----TSLFSHLTKLQILRVGNMDTFTKIQRKDFA--GLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203 (353)
T ss_dssp CTTCCCSSSCS-----SCSCTTCTTCCEEEEEESSSCCEECTTTTT--TCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred CCCCCCcccCc-----hhhhccCCCCcEEECCCCccccccCHHHcc--CCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence 22222211000 0012223444444444442 33332 2333 567788888888877433 257777777777
Q ss_pred eecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCC------
Q 045303 732 DISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPR------ 805 (1206)
Q Consensus 732 ~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~------ 805 (1206)
++++|...... ..+ .+.+++|+.|++++ +.+++..+.
T Consensus 204 ~l~~n~l~~~~-~~~-----------------------------------~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 204 ILHMKQHILLL-EIF-----------------------------------VDVTSSVECLELRD-TDLDTFHFSELSTGE 246 (353)
T ss_dssp EEECSCSTTHH-HHH-----------------------------------HHHTTTEEEEEEES-CBCTTCCCC------
T ss_pred cCCCCccccch-hhh-----------------------------------hhhcccccEEECCC-Ccccccccccccccc
Confidence 77776632211 111 11245555566655 444422111
Q ss_pred CCCCccEEEEeccc-------CccccccCCCCcceEEecCCCcceecCcchhhhhhhhhcCCCCCcceeeeccCCC
Q 045303 806 RLLLLETLDITSCH-------QLLVTIQCLPALSELQIDGCKRVVFSSPHLVHAVNAWMQNSSTSLESLAIGRCDS 874 (1206)
Q Consensus 806 ~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 874 (1206)
....++.+++.++. .++..+..+++|+.|++++|.+..+ +...+..+++|++|++++|+.
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i---------~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV---------PDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC---------CTTTTTTCTTCCEEECCSSCB
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc---------CHHHHhcCCCCCEEEeeCCCc
Confidence 23345555555544 1233355666677777766654432 223334556666666666654
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=2.1e-17 Score=180.68 Aligned_cols=203 Identities=18% Similarity=0.156 Sum_probs=101.2
Q ss_pred CccccceEEecccCCcccchhh-cCCCCcceeeeccccCcCcccccccCCCccceeeccccC-CcccccCCCCCCCCccE
Q 045303 944 LPQALKYLGVESCSKLESLAER-LDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCP-NLESFPEEGLPSTKLTE 1021 (1206)
Q Consensus 944 ~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~ 1021 (1206)
.+++++.|++++|......+.. ...++|++|++++|.+.+..|..+.++++|++|++++|. +....+..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3455566655555433322221 223455555555555444444455555555555555554 22222444455555555
Q ss_pred EEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCC
Q 045303 1022 LTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGC 1100 (1206)
Q Consensus 1022 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~ 1100 (1206)
|++++|.+.+..|..|.++++|++|++++|.+....+.. ..+++|+.|++++|.+++ +|...+..+++|++|++++
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~-- 186 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQ-- 186 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCS--
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cCHHHhcCccccCEEECCC--
Confidence 555555555444445555555555555555544433322 344555555555555542 2222344555555555543
Q ss_pred CCceecCCCCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCC--CCccccceecccCChh
Q 045303 1101 PDLVSLPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQ--GLPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1101 ~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~--~~~~~L~~L~l~~c~~ 1170 (1206)
+.+..+ .+..+..+++|+.|++++| .++.++.. ..+++|+.|++++||.
T Consensus 187 n~l~~~--------------------~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 187 NRVAHV--------------------HPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp SCCCEE--------------------CTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred Cccccc--------------------CHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 222222 1223345667777777777 45555532 2356777777777764
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=3e-17 Score=191.60 Aligned_cols=235 Identities=14% Similarity=0.134 Sum_probs=187.1
Q ss_pred CcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCcccccccc
Q 045303 958 KLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCM 1037 (1206)
Q Consensus 958 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 1037 (1206)
.++.+|..+. .+++.|++++|.+....+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+....+..|
T Consensus 54 ~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 54 NLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp CCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred CcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 3445554333 789999999999988888899999999999999998888777889999999999999999988777789
Q ss_pred CCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCC--CCCCCc
Q 045303 1038 HNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP--FPASLT 1114 (1206)
Q Consensus 1038 ~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~--~~~~L~ 1114 (1206)
..+++|++|+|++|.+....+.. ..+++|+.|++++|...+.++...|.++++|++|++++ +.++.+|. .+.+|+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~l~~L~ 210 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM--CNLREIPNLTPLIKLD 210 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT--SCCSSCCCCTTCSSCC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC--CcCccccccCCCcccC
Confidence 99999999999999988755543 78899999999997776778877899999999999976 67788886 344556
Q ss_pred ceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCChhhHHhhccCCCCCCCcccccCee
Q 045303 1115 GLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCPLIEERCRKDEGKYWPMISHIPCV 1192 (1206)
Q Consensus 1115 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 1192 (1206)
.|++.++......+..+..+++|+.|++++| .++.++...+ +++|+.|++++|..- ......+..+.++..+
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L 284 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT-----LLPHDLFTPLHHLERI 284 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCC-----CCCTTTTSSCTTCCEE
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCC-----ccChhHhccccCCCEE
Confidence 6665555444444555678999999999999 6777765444 789999999999642 1222234667778888
Q ss_pred EECccccCC
Q 045303 1193 EINFRSPFE 1201 (1206)
Q Consensus 1193 ~~~~~~~~~ 1201 (1206)
.++++++.+
T Consensus 285 ~L~~Np~~C 293 (440)
T 3zyj_A 285 HLHHNPWNC 293 (440)
T ss_dssp ECCSSCEEC
T ss_pred EcCCCCccC
Confidence 888887655
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.73 E-value=3.9e-17 Score=191.39 Aligned_cols=235 Identities=15% Similarity=0.135 Sum_probs=186.2
Q ss_pred cccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccC
Q 045303 959 LESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMH 1038 (1206)
Q Consensus 959 l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 1038 (1206)
++.+|..+. +++++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+.++++|++|+|++|.+....+..|.
T Consensus 66 l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 66 LSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp CSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred cCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 444444332 7899999999999888889999999999999999988888888899999999999999999887778899
Q ss_pred CCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCC--CCCCCcc
Q 045303 1039 NLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP--FPASLTG 1115 (1206)
Q Consensus 1039 ~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~--~~~~L~~ 1115 (1206)
++++|++|+|++|.+....+.. ..+++|+.|++++|...+.++...|.++++|+.|++++ +.+..+|. .+.+|+.
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~l~~L~~ 222 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM--CNIKDMPNLTPLVGLEE 222 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT--SCCSSCCCCTTCTTCCE
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC--CcccccccccccccccE
Confidence 9999999999999988655433 78999999999997776778877899999999999976 67778875 3445666
Q ss_pred eeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCChhhHHhhccCCCCCCCcccccCeeE
Q 045303 1116 LEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCPLIEERCRKDEGKYWPMISHIPCVE 1193 (1206)
Q Consensus 1116 L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 1193 (1206)
|++.++......+..+..+++|+.|++++| .++.++...+ +++|+.|++++|..- ......+.....+..+.
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLS-----SLPHDLFTPLRYLVELH 296 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS-----CCCTTSSTTCTTCCEEE
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCC-----ccChHHhccccCCCEEE
Confidence 665555444444445578999999999999 5666655433 689999999999642 11222345667788888
Q ss_pred ECccccCCC
Q 045303 1194 INFRSPFEG 1202 (1206)
Q Consensus 1194 ~~~~~~~~~ 1202 (1206)
++++++.+.
T Consensus 297 L~~Np~~Cd 305 (452)
T 3zyi_A 297 LHHNPWNCD 305 (452)
T ss_dssp CCSSCEECS
T ss_pred ccCCCcCCC
Confidence 888776543
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=8e-19 Score=214.99 Aligned_cols=89 Identities=20% Similarity=0.341 Sum_probs=60.7
Q ss_pred HHhccCCceeEEEecCCCCcccC---Ccc------------ccCccccceeeccccccc-ccccccc-ccccccEEecCC
Q 045303 494 MLLNHLPRLRVFSLCGYSNIFSL---PNE------------IGNLKHLRCLNLSRTRIQ-ILPESIN-SLYNLHTILLED 556 (1206)
Q Consensus 494 ~~~~~~~~L~~L~L~~~~~~~~l---p~~------------~~~l~~L~~L~Ls~n~i~-~lp~~~~-~L~~L~~L~L~~ 556 (1206)
..+..+++|+.|++++|..+..+ |.. +..+++|++|+|++|.+. ..+..+. .+++|++|+|++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEES
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCC
Confidence 44667788888888887444322 111 235678888888888776 3344454 678888888888
Q ss_pred Cccccc--ccccccCCCccceeecCCCC
Q 045303 557 CWKLKK--LCKDMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 557 n~~~~~--lp~~~~~L~~L~~L~l~~n~ 582 (1206)
|..+.. ++..+.++++|++|++++|.
T Consensus 140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 140 CEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp CEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred cCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 854444 44445678888888888887
No 67
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.7e-17 Score=173.28 Aligned_cols=197 Identities=13% Similarity=0.122 Sum_probs=134.9
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccC-CcccccCCCCCCCCccEEEecc-ccCccccccccCCCCccCee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCP-NLESFPEEGLPSTKLTELTIWD-CENLKALPNCMHNLTSLLDL 1046 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L 1046 (1206)
.++++|++++|.+.+..+..|.++++|++|++++|. +.+..+..+..+++|++|++++ |.+.+..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 466677777776665555567778888888888886 4444444677778888888887 66666556677788888888
Q ss_pred eeecCCCCccCCCCCCCCCcC---eEEEeCc-CCCCCCCccCCCCCCCcc-eEEeecCCCCceecCCCC---CCCcceee
Q 045303 1047 DIRGCPSVVSFPEDGFPTNLQ---SLEVRGL-KISKPLPEWGFNRFTSLR-RFTICGGCPDLVSLPPFP---ASLTGLEI 1118 (1206)
Q Consensus 1047 ~L~~n~~~~~~~~~~~~~~L~---~L~Ls~n-~l~~~~p~~~~~~l~~L~-~L~ls~~~~~l~~lp~~~---~~L~~L~~ 1118 (1206)
++++|.+.+ +|....+++|+ .|++++| .+.+ +|...|.++++|+ .|++++ +.++.+|... .+|+.|++
T Consensus 111 ~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L~~~L~l~~--n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNETLTLKLYN--NGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSSEEEEECCS--CCCCEECTTTTTTCEEEEEEC
T ss_pred eCCCCCCcc-ccccccccccccccEEECCCCcchhh-cCcccccchhcceeEEEcCC--CCCcccCHhhcCCCCCCEEEc
Confidence 888887765 55556666776 8888888 6663 4444677888888 888865 5666777632 23444444
Q ss_pred ccCCCC-ccccCCCCCc-CcccccccccCCCCCCCCCCCCccccceecccCChhh
Q 045303 1119 SDMPDL-ECLSSIGENL-TSLKYLYLIDCPKLKYFPEQGLPKSLLQLHIKGCPLI 1171 (1206)
Q Consensus 1119 ~~~~~~-~~~~~~~~~l-~~L~~L~l~~n~~l~~l~~~~~~~~L~~L~l~~c~~l 1171 (1206)
.++..+ .+....+..+ ++|+.|++++| .++.+|.. .+++|+.|++.+|+.+
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 444322 2223344677 89999999998 67888865 5778999999988753
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=2e-17 Score=180.89 Aligned_cols=184 Identities=16% Similarity=0.119 Sum_probs=149.7
Q ss_pred cccccceEEEeccCCccccc-cCCCCccccceEEecccCCcccchhhc-CCCCcceeeecccc-CcCcccccccCCCccc
Q 045303 920 FSATLEHLEVSSCSNLAFLT-RNGNLPQALKYLGVESCSKLESLAERL-DNTSLEEITILNLE-NLKSLPAGLHNLHHLQ 996 (1206)
Q Consensus 920 ~~~~l~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~ 996 (1206)
++.+++.|+++++. ++.++ ......++|+.|++++|......+..+ ..++|++|++++|. .....|..+..+++|+
T Consensus 30 ~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 34678999998876 44333 223344699999999986555444443 45899999999998 4444478899999999
Q ss_pred eeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCC-CCCCCCcCeEEEeCcC
Q 045303 997 KIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPE-DGFPTNLQSLEVRGLK 1075 (1206)
Q Consensus 997 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~-~~~~~~L~~L~Ls~n~ 1075 (1206)
+|++++|.+.+..+..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..+. ...+++|+.|++++|.
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 999999998888788899999999999999999887777899999999999999998876554 3778999999999999
Q ss_pred CCCCCCccCCCCCCCcceEEeecCCCCceecC
Q 045303 1076 ISKPLPEWGFNRFTSLRRFTICGGCPDLVSLP 1107 (1206)
Q Consensus 1076 l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp 1107 (1206)
+++..|. .|..+++|+.|++++ +.+..+|
T Consensus 189 l~~~~~~-~~~~l~~L~~L~l~~--n~l~~~~ 217 (285)
T 1ozn_A 189 VAHVHPH-AFRDLGRLMTLYLFA--NNLSALP 217 (285)
T ss_dssp CCEECTT-TTTTCTTCCEEECCS--SCCSCCC
T ss_pred ccccCHh-HccCcccccEeeCCC--CcCCcCC
Confidence 9977676 789999999999986 4555555
No 69
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=188.34 Aligned_cols=244 Identities=15% Similarity=0.058 Sum_probs=163.8
Q ss_pred cccceEEEeccCCcccccc-CCCCccccceEEecccCCcccchhhc-CCCCcceeeeccccCcCcccccccCCCccceee
Q 045303 922 ATLEHLEVSSCSNLAFLTR-NGNLPQALKYLGVESCSKLESLAERL-DNTSLEEITILNLENLKSLPAGLHNLHHLQKIW 999 (1206)
Q Consensus 922 ~~l~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 999 (1206)
.+++.|+++++. ++.++. .....++|+.|++++|......+..+ ..++|++|++++|.+.+..+..+.++++|++|+
T Consensus 52 ~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 467788887765 444432 23334678888888875544434333 357888888888877655444577788888888
Q ss_pred ccccCCccccc-CCCCCCCCccEEEecccc-CccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCC
Q 045303 1000 IGYCPNLESFP-EEGLPSTKLTELTIWDCE-NLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKI 1076 (1206)
Q Consensus 1000 L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l 1076 (1206)
+++|++.+..+ ..+..+++|++|++++|. +....+..|.++++|++|++++|.+.+..|.. ..+++|++|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 88886654333 367778888888888884 44444667888888888888888877765554 6778888888888887
Q ss_pred CCCCCccCCCCCCCcceEEeecCCCCceecCC-------CCCCCcceeeccCCCCcc----ccCCCCCcCcccccccccC
Q 045303 1077 SKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP-------FPASLTGLEISDMPDLEC----LSSIGENLTSLKYLYLIDC 1145 (1206)
Q Consensus 1077 ~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~-------~~~~L~~L~~~~~~~~~~----~~~~~~~l~~L~~L~l~~n 1145 (1206)
. .+|...+..+++|+.|++++ +.+..++. ....++.+++.++..... .+.....+++|+.|++++|
T Consensus 211 ~-~~~~~~~~~~~~L~~L~L~~--n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 211 I-LLLEIFVDVTSSVECLELRD--TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp T-THHHHHHHHTTTEEEEEEES--CBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred c-cchhhhhhhcccccEEECCC--CccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 5 45544555678888888876 34444332 223344444444322110 1112257889999999999
Q ss_pred CCCCCCCCCC--CccccceecccCChh
Q 045303 1146 PKLKYFPEQG--LPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1146 ~~l~~l~~~~--~~~~L~~L~l~~c~~ 1170 (1206)
.++.+|... -+++|+.|++++||.
T Consensus 288 -~l~~i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 288 -QLKSVPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence 688888753 478999999999875
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=3.3e-17 Score=181.35 Aligned_cols=221 Identities=19% Similarity=0.170 Sum_probs=117.0
Q ss_pred ccccceEEecccCCcccchhh--cCCCCcceeeeccccCcCc--ccccccCCCccceeeccccCCcccccCCCCCCCCcc
Q 045303 945 PQALKYLGVESCSKLESLAER--LDNTSLEEITILNLENLKS--LPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLT 1020 (1206)
Q Consensus 945 ~~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1020 (1206)
+++++.|++++|..- .++.. ...++|++|++++|.+... .+..+.++++|++|+|++|.+. .+|..+..+++|+
T Consensus 27 ~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCC
T ss_pred CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCC
Confidence 345555555555432 23221 2335566666665554321 2334445566666666665433 2344455556666
Q ss_pred EEEeccccCccccc-cccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCC-CCCccCCCCCCCcceEEee
Q 045303 1021 ELTIWDCENLKALP-NCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISK-PLPEWGFNRFTSLRRFTIC 1097 (1206)
Q Consensus 1021 ~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~-~~p~~~~~~l~~L~~L~ls 1097 (1206)
+|++++|.+.+..+ ..+..+++|++|++++|.+.+..+.. ..+++|++|++++|.+.+ .+|. .+..+++|++|+++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLS 183 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh-HHhhCcCCCEEECC
Confidence 66666665554433 34555666666666666555444433 445566666666665553 2333 45556666666665
Q ss_pred cCCCCceec-CCCCCCCcceeeccCCCCcccc---CCCCCcCcccccccccCCCCCCCCCC--CCccccceecccCChh
Q 045303 1098 GGCPDLVSL-PPFPASLTGLEISDMPDLECLS---SIGENLTSLKYLYLIDCPKLKYFPEQ--GLPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1098 ~~~~~l~~l-p~~~~~L~~L~~~~~~~~~~~~---~~~~~l~~L~~L~l~~n~~l~~l~~~--~~~~~L~~L~l~~c~~ 1170 (1206)
+ +.+..+ |..+..+..|...+++++.+.. ..+..+++|+.|++++|+.....|.. .++++|+.|++++||.
T Consensus 184 ~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 184 Q--CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp T--SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred C--CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 4 344444 2333333333333333333222 22356789999999999543333432 2346899999999875
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.71 E-value=1.9e-18 Score=191.33 Aligned_cols=195 Identities=18% Similarity=0.117 Sum_probs=122.2
Q ss_pred CCCcceeeeccccCcCcccccc--cCCCccceeeccccCCcccccCCCCCC-----CCccEEEeccccCccccccccCCC
Q 045303 968 NTSLEEITILNLENLKSLPAGL--HNLHHLQKIWIGYCPNLESFPEEGLPS-----TKLTELTIWDCENLKALPNCMHNL 1040 (1206)
Q Consensus 968 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~p~~~~~l 1040 (1206)
.++|++|++++|.+.+.+|..+ ..+++|++|+|++|.+.+. |..+..+ ++|++|+|++|.+.+..|..|+.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5677777777777776666655 6777777777777766554 5444444 677777777777776666777777
Q ss_pred CccCeeeeecCCCCccC---CCC--CCCCCcCeEEEeCcCCCC--CCCccCCCCCCCcceEEeecCCCCceecC--CCC-
Q 045303 1041 TSLLDLDIRGCPSVVSF---PED--GFPTNLQSLEVRGLKISK--PLPEWGFNRFTSLRRFTICGGCPDLVSLP--PFP- 1110 (1206)
Q Consensus 1041 ~~L~~L~L~~n~~~~~~---~~~--~~~~~L~~L~Ls~n~l~~--~~p~~~~~~l~~L~~L~ls~~~~~l~~lp--~~~- 1110 (1206)
++|++|++++|.+.+.+ +.. ..+++|++|++++|.+++ .++...+..+++|++|++++ +.+...+ ..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH--NSLRDAAGAPSCD 250 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT--SCCCSSCCCSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC--CcCCcccchhhhh
Confidence 77777777777765431 122 456777777777777762 22223345667777777765 3444433 122
Q ss_pred --CCCcceeeccCCCCccccCCCCC-cCcccccccccCCCCCCCCCCCCccccceecccCChh
Q 045303 1111 --ASLTGLEISDMPDLECLSSIGEN-LTSLKYLYLIDCPKLKYFPEQGLPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1111 --~~L~~L~~~~~~~~~~~~~~~~~-l~~L~~L~l~~n~~l~~l~~~~~~~~L~~L~l~~c~~ 1170 (1206)
.+|+.|++.++ .+. .++.. .++|+.|++++| .++.+|....+++|+.|++++|+.
T Consensus 251 ~l~~L~~L~Ls~N---~l~-~ip~~~~~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 251 WPSQLNSLNLSFT---GLK-QVPKGLPAKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCTTCCEEECTTS---CCS-SCCSSCCSEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCTT
T ss_pred hcCCCCEEECCCC---ccC-hhhhhccCCceEEECCCC-CCCCChhHhhCCCCCEEeccCCCC
Confidence 33444443333 322 22211 168888888888 577777644577888888888874
No 72
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=7.2e-18 Score=187.08 Aligned_cols=259 Identities=13% Similarity=0.078 Sum_probs=188.1
Q ss_pred HHHHHHHhccCCceeEEEecCCCCcccCC-ccccCccccceeeccccccccccccccccccccEEecCCCcccccccccc
Q 045303 489 WSVLKMLLNHLPRLRVFSLCGYSNIFSLP-NEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDM 567 (1206)
Q Consensus 489 ~~~~~~~~~~~~~L~~L~L~~~~~~~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~ 567 (1206)
...+...+..+++|++|+|++| .+..++ ..|.++++|++|+|++|.++.+++ +..+++|++|++++| .+..+|
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~--- 96 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL--- 96 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE---
T ss_pred hhhHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc---
Confidence 3456677888999999999999 777665 689999999999999999997765 899999999999999 666555
Q ss_pred cCCCccceeecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCC
Q 045303 568 GNLTKLRHLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNN 647 (1206)
Q Consensus 568 ~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 647 (1206)
..++|++|++++|. +..++.. .+++|++|++..+. +....+..+..
T Consensus 97 -~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~------------------------------l~~~~~~~~~~ 142 (317)
T 3o53_A 97 -VGPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNK------------------------------ITMLRDLDEGC 142 (317)
T ss_dssp -ECTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSC------------------------------CCSGGGBCTGG
T ss_pred -CCCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCC------------------------------CCCccchhhhc
Confidence 34899999999998 5544432 24556666433221 12233345667
Q ss_pred CCCCCceEEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC-CCCCCC
Q 045303 648 KVNLQALSLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP-SVGQLP 726 (1206)
Q Consensus 648 l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~ 726 (1206)
+++|+.|++++|.+........ ...+++|+.|++++|.+..+|... .+++|+.|++++|.+..++ .+..++
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~ 214 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAEL-----AASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAA 214 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGG-----GGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGT
T ss_pred cCCCCEEECCCCCCCcccHHHH-----hhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccC
Confidence 7888888888888765432111 123578889999988888776554 4788999999999886554 578889
Q ss_pred CCceeeecCCCCceeecccccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccCCcccEEeeccCcccccCCCCC
Q 045303 727 FLKELDISGMDGVVSVGSVFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVFPKLRKLSLRHCDKLQGTLPRR 806 (1206)
Q Consensus 727 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~~ 806 (1206)
+|+.|++++|.... ++..+.. +++|+.|++++++......+ .....+++|+.|++.+|+.+++..|..
T Consensus 215 ~L~~L~L~~N~l~~-l~~~~~~------l~~L~~L~l~~N~~~~~~~~-----~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 215 GVTWISLRNNKLVL-IEKALRF------SQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp TCSEEECTTSCCCE-ECTTCCC------CTTCCEEECTTCCCBHHHHH-----HHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cccEEECcCCcccc-hhhHhhc------CCCCCEEEccCCCccCcCHH-----HHHhccccceEEECCCchhccCCchhc
Confidence 99999999887664 3444433 78999999988765422222 133457889999999878888776644
Q ss_pred C
Q 045303 807 L 807 (1206)
Q Consensus 807 l 807 (1206)
.
T Consensus 283 ~ 283 (317)
T 3o53_A 283 C 283 (317)
T ss_dssp C
T ss_pred c
Confidence 3
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.3e-16 Score=171.44 Aligned_cols=196 Identities=18% Similarity=0.079 Sum_probs=92.0
Q ss_pred CcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeee
Q 045303 970 SLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIR 1049 (1206)
Q Consensus 970 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 1049 (1206)
+|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+|++|.+.+..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 34444444444433333344455555555555554444434444455555555555555544444445555555555555
Q ss_pred cCCCCccCCC-CCCCCCcCeEEEeCcCCCCC-CCccCCCCCCCcceEEeecCCCCceecCC-CC---CCCc----ceeec
Q 045303 1050 GCPSVVSFPE-DGFPTNLQSLEVRGLKISKP-LPEWGFNRFTSLRRFTICGGCPDLVSLPP-FP---ASLT----GLEIS 1119 (1206)
Q Consensus 1050 ~n~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~-~p~~~~~~l~~L~~L~ls~~~~~l~~lp~-~~---~~L~----~L~~~ 1119 (1206)
+|.+.+..+. ...+++|++|++++|.+++. +|. .+..+++|++|++++ +.++.++. .+ .+++ .|++.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~-~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSS--NKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCS--SCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCch-hhccCCCCCEEECCC--CCCCcCCHHHhhhhhhccccceeeecC
Confidence 5554443331 24445555555555555432 233 345555555555543 33333332 11 1222 22222
Q ss_pred cCCCCccccCCCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCChh
Q 045303 1120 DMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1120 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~~ 1170 (1206)
++.........+ ...+|+.|++++| .++.+|...+ +++|+.|++++||.
T Consensus 186 ~n~l~~~~~~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 186 LNPMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp SSCCCEECTTSS-CSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred CCcccccCcccc-CCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcc
Confidence 222111111111 2336777777777 4666665332 56777777775543
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.3e-16 Score=171.47 Aligned_cols=204 Identities=17% Similarity=0.095 Sum_probs=156.7
Q ss_pred CCCccccceEEecccCCcccch-hhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCcc
Q 045303 942 GNLPQALKYLGVESCSKLESLA-ERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLT 1020 (1206)
Q Consensus 942 ~~~~~~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1020 (1206)
..+|++++.|++++|......+ .....++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|+
T Consensus 24 ~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (276)
T 2z62_A 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103 (276)
T ss_dssp SSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred CCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcccc
Confidence 3456788999998886554444 233458999999999988777777889999999999999988887778889999999
Q ss_pred EEEeccccCccccccccCCCCccCeeeeecCCCCcc-CCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcc----eE
Q 045303 1021 ELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVS-FPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLR----RF 1094 (1206)
Q Consensus 1021 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~----~L 1094 (1206)
+|++++|.+.+..+..+..+++|++|++++|.+.+. +|.. ..+++|++|++++|.+++..+. .+..+++|+ .|
T Consensus 104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~l~l~L 182 (276)
T 2z62_A 104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT-DLRVLHQMPLLNLSL 182 (276)
T ss_dssp EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG-GGHHHHTCTTCCEEE
T ss_pred EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH-Hhhhhhhccccceee
Confidence 999999998887777899999999999999988763 3544 7789999999999999864443 677777777 78
Q ss_pred EeecCCCCceecCCCCC---CCcceeeccCCCCccccCCCCCcCcccccccccCCCC
Q 045303 1095 TICGGCPDLVSLPPFPA---SLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKL 1148 (1206)
Q Consensus 1095 ~ls~~~~~l~~lp~~~~---~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l 1148 (1206)
++++ +.+..++.... +|+.|++.++..-......+..+++|+.|++++|+..
T Consensus 183 ~ls~--n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 183 DLSL--NPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ECCS--SCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ecCC--CcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 8875 67777776333 4555555544433333334467899999999999643
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=9.4e-16 Score=165.69 Aligned_cols=197 Identities=18% Similarity=0.183 Sum_probs=138.4
Q ss_pred ccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEecc
Q 045303 947 ALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWD 1026 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1026 (1206)
..+.++++++. ++.+|..+. .++++|++++|.+....+..|.++++|++|+|++|.+.+..+..+..+++|++|+|++
T Consensus 17 ~~~~l~~~~~~-l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKK-LTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSC-CSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCC-CCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 45667776654 444554332 6788888888887766666788888888888888876655555567788888888888
Q ss_pred ccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCcee
Q 045303 1027 CENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVS 1105 (1206)
Q Consensus 1027 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~ 1105 (1206)
|.+.+..+..|..+++|++|++++|.+....+.. ..+++|++|++++|.+++ +|...|..+++|+.|++++ +.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~--n~l~~ 171 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYN--NQLKR 171 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS--SCCSC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecC--CcCcE
Confidence 8887776777788888888888888887765544 678888888888888874 4444678888888888875 44555
Q ss_pred cCCCCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCCh
Q 045303 1106 LPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCP 1169 (1206)
Q Consensus 1106 lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~ 1169 (1206)
+|. ..+..+++|+.|++++| .++.+|...+ +++|+.|++++||
T Consensus 172 ~~~--------------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 172 VPE--------------------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCT--------------------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eCh--------------------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 543 11234566666666666 4555554322 4566666666665
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=6.7e-17 Score=178.77 Aligned_cols=195 Identities=15% Similarity=0.111 Sum_probs=125.6
Q ss_pred CCCcceeeeccccCcCcccccc--cCCCccceeeccccCCccccc----CCCCCCCCccEEEeccccCccccccccCCCC
Q 045303 968 NTSLEEITILNLENLKSLPAGL--HNLHHLQKIWIGYCPNLESFP----EEGLPSTKLTELTIWDCENLKALPNCMHNLT 1041 (1206)
Q Consensus 968 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 1041 (1206)
.++|++|++++|.+.+..|..+ ..+++|++|+|++|.+.+..+ ..+..+++|++|+|++|.+.+..|..|+.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3567777777777777777666 677777777777777665433 2234567777777777777776677777777
Q ss_pred ccCeeeeecCCCCcc---CCCC--CCCCCcCeEEEeCcCCCCCCCc---cCCCCCCCcceEEeecCCCCceec-CCCC--
Q 045303 1042 SLLDLDIRGCPSVVS---FPED--GFPTNLQSLEVRGLKISKPLPE---WGFNRFTSLRRFTICGGCPDLVSL-PPFP-- 1110 (1206)
Q Consensus 1042 ~L~~L~L~~n~~~~~---~~~~--~~~~~L~~L~Ls~n~l~~~~p~---~~~~~l~~L~~L~ls~~~~~l~~l-p~~~-- 1110 (1206)
+|++|+|++|++.+. .+.. ..+++|++|++++|.++. ++. ..+..+++|++|++++ |.+..+ |..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~--N~l~~~~p~~~~~ 246 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSH--NSLRATVNPSAPR 246 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTT--SCCCCCCCSCCSS
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCC--CCCCccchhhHHh
Confidence 777777777776542 1112 456777777777777752 222 1245667777777765 445544 4422
Q ss_pred ----CCCcceeeccCCCCccccCCC-CCcCcccccccccCCCCCCCCCCCCccccceecccCChh
Q 045303 1111 ----ASLTGLEISDMPDLECLSSIG-ENLTSLKYLYLIDCPKLKYFPEQGLPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1111 ----~~L~~L~~~~~~~~~~~~~~~-~~l~~L~~L~l~~n~~l~~l~~~~~~~~L~~L~l~~c~~ 1170 (1206)
++|+.|++.++ .+.. ++ .-+++|+.|++++| .++.+|....+++|+.|++++|+.
T Consensus 247 ~~~~~~L~~L~Ls~N---~l~~-lp~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 247 CMWSSALNSLNLSFA---GLEQ-VPKGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCCCTTCCCEECCSS---CCCS-CCSCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTTT
T ss_pred ccCcCcCCEEECCCC---CCCc-hhhhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCCCC
Confidence 24444444333 3321 22 22378889999988 677776655578888999988875
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=4.3e-17 Score=180.84 Aligned_cols=192 Identities=11% Similarity=0.000 Sum_probs=132.8
Q ss_pred ccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEecc
Q 045303 947 ALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWD 1026 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1026 (1206)
+|+.|++++|. ++.++ ..++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 81 ~L~~L~Ls~n~-l~~l~---~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 81 TLRTLDLNNNY-VQELL---VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp TCCEEECCSSE-EEEEE---ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred CCCEEECcCCc-ccccc---CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 55555555553 22222 126788888888877665443 367899999999988887777888889999999999
Q ss_pred ccCcccccccc-CCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCcee
Q 045303 1027 CENLKALPNCM-HNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVS 1105 (1206)
Q Consensus 1027 n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~ 1105 (1206)
|.+.+..+..+ ..+++|++|++++|.+.+. +....+++|++|++++|.+++ +|. .+..+++|+.|++++ +.++.
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~-~~~~l~~L~~L~L~~--N~l~~ 228 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGP-EFQSAAGVTWISLRN--NKLVL 228 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECG-GGGGGTTCSEEECTT--SCCCE
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chh-hhcccCcccEEECcC--Ccccc
Confidence 99888777666 4789999999999988764 445568899999999999985 444 388899999999976 56777
Q ss_pred cCCCCCCCcceeeccCCCCccc----cCCCCCcCcccccccccCCCCCC
Q 045303 1106 LPPFPASLTGLEISDMPDLECL----SSIGENLTSLKYLYLIDCPKLKY 1150 (1206)
Q Consensus 1106 lp~~~~~L~~L~~~~~~~~~~~----~~~~~~l~~L~~L~l~~n~~l~~ 1150 (1206)
+|..+..++.|...+++++.+. +.....+++|+.|++++|+.++.
T Consensus 229 l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 7765544444444444444333 11124455666666665554444
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=3.7e-17 Score=180.84 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=40.9
Q ss_pred cCCceeEEEecCCCCcccCCccc--cCccccceeecccccccccccccccc-----ccccEEecCCCcccccccccccCC
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEI--GNLKHLRCLNLSRTRIQILPESINSL-----YNLHTILLEDCWKLKKLCKDMGNL 570 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~--~~l~~L~~L~Ls~n~i~~lp~~~~~L-----~~L~~L~L~~n~~~~~lp~~~~~L 570 (1206)
.+++|++|+|++|.....+|..+ ..+++|++|+|++|.++.+|..+..+ ++|++|++++|......|..|+.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 34555555555552222344433 45555555555555555444444444 555555555553222222445555
Q ss_pred CccceeecCCCC
Q 045303 571 TKLRHLRNSNAD 582 (1206)
Q Consensus 571 ~~L~~L~l~~n~ 582 (1206)
++|++|++++|.
T Consensus 173 ~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 173 PALSTLDLSDNP 184 (312)
T ss_dssp SSCCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 555555555554
No 79
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=1.5e-15 Score=172.00 Aligned_cols=294 Identities=14% Similarity=0.101 Sum_probs=180.2
Q ss_pred CCCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC------C
Q 045303 86 VTEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF------D 159 (1206)
Q Consensus 86 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~ 159 (1206)
..+..|+||++++++|.+++... +++.|+|++|+|||+|++++++. . . .+|+.+.... +
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~--~----~-~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNE--R----P-GILIDCRELYAERGHIT 73 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHH--S----S-EEEEEHHHHHHTTTCBC
T ss_pred CChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHH--c----C-cEEEEeecccccccCCC
Confidence 34567999999999999998641 58999999999999999999873 2 1 5677664432 4
Q ss_pred hHHHHHHHHHhccC----------------CCC--CCCCHHHHHHHHHHHhCC-CceEEEEeCCCccCH------hhHHh
Q 045303 160 VPRVTKSILESIAN----------------VTV--DDNNLNSLQVKLKERLSG-KKFLLVLDDVWNENY------IRWSE 214 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~~------~~~~~ 214 (1206)
...++..+.+.+.. ... ......++...+.+.... ++++||+||++.... ..+..
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~ 153 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHH
Confidence 55666666655432 000 123455566666665543 389999999977432 12222
Q ss_pred hhccCCCCCCCcEEEEEccchHHHhh----------c--CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHH
Q 045303 215 LRCPFVAGAAGSKIVVTTRNLVVAER----------M--RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGE 282 (1206)
Q Consensus 215 l~~~l~~~~~~~~iliTtr~~~~~~~----------~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 282 (1206)
....+.....+.++|+|++...+... . .....+++.+|+.+|+.+++.......+. . ...+.+.
T Consensus 154 ~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~---~~~~~~~ 229 (350)
T 2qen_A 154 LFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-D---VPENEIE 229 (350)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHH
T ss_pred HHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHH
Confidence 22222222257889999887543111 1 11236899999999999999875422211 1 1235778
Q ss_pred HHHHhcCCcchHHHHHHhhhCCCCChhHHHHHHhhhccccCCCCchHHHHHhhcCC---ChhHHHHHhhhcCCCCCcccC
Q 045303 283 QIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKNDIWNLRDSDILPALRVSYHFL---PPQLKQCFAYCSLFPKDYEFQ 359 (1206)
Q Consensus 283 ~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L---~~~~k~~~~~l~~fp~~~~~~ 359 (1206)
++++.++|+|+++..++..+....+...+...... .+...+...+..+ ++..+.++..+|. .. ..
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~--~~ 297 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE--------VAKGLIMGELEELRRRSPRYVDILRAIAL--GY--NR 297 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH--------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC--CS
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH--------HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CC--CC
Confidence 99999999999999988654321122222111100 1111122222223 7889999999988 22 34
Q ss_pred HHHHHHHHHHcCCcccccCCCCHHHHHHHHHHHHHhCCccccccCCCCcee-ehHHHHHHHH
Q 045303 360 EEEIILLWTAEGFLDQEYSGRKMEDLGREFVRELHSRSLFQQSSKGASRFV-MHDLINDLAR 420 (1206)
Q Consensus 360 ~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~-~H~lv~~~~~ 420 (1206)
...+........ ++. .......+++.|++.++|.... ..|+ .|++++++.+
T Consensus 298 ~~~l~~~~~~~~------~~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKG------TKI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTT------CCC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHh------CCC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 444444322211 011 1345678999999999998753 2455 5899998865
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.3e-15 Score=164.67 Aligned_cols=197 Identities=19% Similarity=0.149 Sum_probs=153.8
Q ss_pred cceEEEeccCCccccccCCCCccccceEEecccCCcccchh-hcCCCCcceeeeccccCcCcccccccCCCccceeeccc
Q 045303 924 LEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAE-RLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGY 1002 (1206)
Q Consensus 924 l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 1002 (1206)
...+++++.. ++.+| ..+|++++.|++++|......+. ....++|++|++++|.+....+..|.++++|++|+|++
T Consensus 18 ~~~l~~~~~~-l~~ip--~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKK-LTAIP--SNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSC-CSSCC--SCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCC-CCccC--CCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4455555433 45544 34667999999999875444333 33469999999999988766666678999999999999
Q ss_pred cCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCC
Q 045303 1003 CPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLP 1081 (1206)
Q Consensus 1003 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p 1081 (1206)
|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+.. ..+++|+.|++++|.+++. +
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~ 173 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV-P 173 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-C
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-C
Confidence 9887776677888999999999999999888888999999999999999988755543 7789999999999999864 4
Q ss_pred ccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCCCCcCcccccccccCC
Q 045303 1082 EWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCP 1146 (1206)
Q Consensus 1082 ~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1146 (1206)
...|..+++|++|++++ +.++.+|.. .+..+++|+.|++++||
T Consensus 174 ~~~~~~l~~L~~L~L~~--N~l~~~~~~--------------------~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDN--NQLKRVPEG--------------------AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTTTCTTCCEEECCS--SCCSCCCTT--------------------TTTTCTTCCEEECCSSC
T ss_pred hhHhccCCCcCEEECCC--CcCCcCCHH--------------------HhccccCCCEEEecCCC
Confidence 44789999999999986 456665541 12345667777777775
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=4.7e-16 Score=164.80 Aligned_cols=208 Identities=14% Similarity=0.074 Sum_probs=147.9
Q ss_pred cCCccccccCCCCccccceEEecccCCcccchhhc-CCCCcceeeecccc-CcCcccccccCCCccceeeccc-cCCccc
Q 045303 932 CSNLAFLTRNGNLPQALKYLGVESCSKLESLAERL-DNTSLEEITILNLE-NLKSLPAGLHNLHHLQKIWIGY-CPNLES 1008 (1206)
Q Consensus 932 ~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~-n~~~~~ 1008 (1206)
|..++.+|. ++.+++.|++++|..-...+..+ ..++|++|++++|. +....+..|.++++|++|++++ |.+.+.
T Consensus 20 c~~l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 444555553 56688888888876444333233 45889999999987 4444445788899999999998 766655
Q ss_pred ccCCCCCCCCccEEEeccccCccccccccCCCCccC---eeeeecC-CCCccCCCC-CCCCCcC-eEEEeCcCCCCCCCc
Q 045303 1009 FPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLL---DLDIRGC-PSVVSFPED-GFPTNLQ-SLEVRGLKISKPLPE 1082 (1206)
Q Consensus 1009 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~---~L~L~~n-~~~~~~~~~-~~~~~L~-~L~Ls~n~l~~~~p~ 1082 (1206)
.+..+.++++|++|++++|.+.+ +|. |..+++|+ +|++++| .+....+.. ..+++|+ .|++++|.++ .+|.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred CHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 55677888999999999988776 665 88888888 9999999 666544433 6788899 9999999887 6666
Q ss_pred cCCCCCCCcceEEeecCCCCceecCC-CCCCC-cceeeccCCCCccccCCCCCcCcccccccccCCC
Q 045303 1083 WGFNRFTSLRRFTICGGCPDLVSLPP-FPASL-TGLEISDMPDLECLSSIGENLTSLKYLYLIDCPK 1147 (1206)
Q Consensus 1083 ~~~~~l~~L~~L~ls~~~~~l~~lp~-~~~~L-~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 1147 (1206)
..|.. ++|+.|++++ +..++.+|. .+..+ ..|...+++++.+.......+++|+.|++++|..
T Consensus 174 ~~~~~-~~L~~L~L~~-n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 174 YAFNG-TKLDAVYLNK-NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp TTTTT-CEEEEEECTT-CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC--
T ss_pred hhcCC-CCCCEEEcCC-CCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCccC
Confidence 56666 8899999976 324777765 45555 5555555555555543335788999999998864
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.8e-16 Score=186.18 Aligned_cols=146 Identities=10% Similarity=-0.035 Sum_probs=70.9
Q ss_pred CccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccC-CCCccCeeeeecCCCCccCCCCCCCCCcCeEEE
Q 045303 993 HHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMH-NLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEV 1071 (1206)
Q Consensus 993 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~L 1071 (1206)
++|++|+|++|.+.+..|..+..+++|+.|+|++|.+.+..|..+. .+++|++|+|++|.+.+. +....+++|+.|+|
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L 198 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDL 198 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEEC
Confidence 4555555555555554444555555555555555555554444443 455555555555555443 22334555555555
Q ss_pred eCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccc----cCCCCCcCcccccccc
Q 045303 1072 RGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECL----SSIGENLTSLKYLYLI 1143 (1206)
Q Consensus 1072 s~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~----~~~~~~l~~L~~L~l~ 1143 (1206)
++|.+++..| .+..+++|+.|++++ |.+..+|..+..+..|...++++|.+. +.....++.|+.++++
T Consensus 199 s~N~l~~~~~--~~~~l~~L~~L~Ls~--N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 199 SSNKLAFMGP--EFQSAAGVTWISLRN--NKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CSSCCCEECG--GGGGGTTCSEEECTT--SCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCH--hHcCCCCccEEEecC--CcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5555554222 245555555555543 344445543333333333333333322 1112345566666664
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.65 E-value=2.8e-16 Score=184.60 Aligned_cols=212 Identities=13% Similarity=0.046 Sum_probs=119.3
Q ss_pred cccceEEecccCCcccchhhc-CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEe
Q 045303 946 QALKYLGVESCSKLESLAERL-DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTI 1024 (1206)
Q Consensus 946 ~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1024 (1206)
++|+.|++++|......+..+ ..++|++|++++|.+.+..| +..+++|++|+|++|.+.+..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 356666666665444333222 34666666666666655444 6666666666666665443222 156666666
Q ss_pred ccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCc
Q 045303 1025 WDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDL 1103 (1206)
Q Consensus 1025 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l 1103 (1206)
++|.+.+..+. .+++|+.|++++|.+.+..|.. ..+++|+.|+|++|.+++..|......+++|++|+|++ +.+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~--N~l 181 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY--NFI 181 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT--SCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC--Ccc
Confidence 66666654443 3456666666666666554433 45666666666666666555543333566666666654 345
Q ss_pred eecCC--CCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCC-CCccccceecccCChhh
Q 045303 1104 VSLPP--FPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQ-GLPKSLLQLHIKGCPLI 1171 (1206)
Q Consensus 1104 ~~lp~--~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~-~~~~~L~~L~l~~c~~l 1171 (1206)
+.+|. .+++|+.|+++++......+ .+..+++|+.|++++| .++.+|.. ..+++|+.|++++|+..
T Consensus 182 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 182 YDVKGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CEEECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred ccccccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCc
Confidence 55444 23444444444433222222 1345677777777777 45556643 33567777777777654
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=9.9e-16 Score=165.60 Aligned_cols=197 Identities=14% Similarity=0.056 Sum_probs=130.3
Q ss_pred ccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEecc
Q 045303 947 ALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWD 1026 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1026 (1206)
+|+.|++.+|. +..++.....++|++|++++|.+.+ + ..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 42 SIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 55666666554 3334444445777888888777654 2 3567778888888888877666666677778888888888
Q ss_pred ccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCcee
Q 045303 1027 CENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVS 1105 (1206)
Q Consensus 1027 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~ 1105 (1206)
|.+.+..+..|..+++|++|++++|.+.+..+.. ..+++|+.|++++|.+++..+ ..+..+++|++|++++ +.+..
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~--N~l~~ 195 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQ--NQLKS 195 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS--SCCSC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCC--CcCCc
Confidence 8877766666778888888888888777655443 567788888888888775443 3677788888888865 45555
Q ss_pred cCC-CCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCC
Q 045303 1106 LPP-FPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPE 1153 (1206)
Q Consensus 1106 lp~-~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~ 1153 (1206)
++. .+..+..|...+++++.+.. .+++|+.|+++.|.....+|.
T Consensus 196 ~~~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC----CTTTTHHHHHHHHHTGGGBBC
T ss_pred cCHHHHhCCcCCCEEEccCCCccc----cCcHHHHHHHHHHhCCCcccC
Confidence 554 33444444444444444332 456677777777755555554
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=1e-15 Score=166.57 Aligned_cols=199 Identities=20% Similarity=0.196 Sum_probs=133.9
Q ss_pred hccCCceeEEEecCCCCcccCCccccCccccceeeccccccccc-cccccccccccEEecCCCcccccccccccCCCccc
Q 045303 496 LNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 574 (1206)
Q Consensus 496 ~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~ 574 (1206)
+..+++++.++++++ .+..+|..+. ++|++|+|++|.|+.+ |..|..+++|++|+|++| .+..+|.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCC
T ss_pred ccccCCccEEECCCC-CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCC
Confidence 467788999999988 8888887765 7899999999999865 467889999999999998 66666654 7889999
Q ss_pred eeecCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCce
Q 045303 575 HLRNSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQAL 654 (1206)
Q Consensus 575 ~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L 654 (1206)
+|++++|. +..+|..+..+++|+.|++..+. +....+..|..+++|+.|
T Consensus 81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~------------------------------l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR------------------------------LTSLPLGALRGLGELQEL 129 (290)
T ss_dssp EEECCSSC-CSSCCCCTTTCTTCCEEECCSSC------------------------------CCCCCSSTTTTCTTCCEE
T ss_pred EEECCCCc-CCcCchhhccCCCCCEEECCCCc------------------------------CcccCHHHHcCCCCCCEE
Confidence 99999998 67777777777777776433221 112223345666677777
Q ss_pred EEeecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCC-CCCCCCCCceeee
Q 045303 655 SLEWSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLP-SVGQLPFLKELDI 733 (1206)
Q Consensus 655 ~l~~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~-~l~~l~~L~~L~L 733 (1206)
++++|.+..... ..+..+++|+.|++++|.+..+|..++. .+++|+.|++++|.+..+| .+..+++|+.|+|
T Consensus 130 ~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 130 YLKGNELKTLPP------GLLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp ECTTSCCCCCCT------TTTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCCCSEEEC
T ss_pred ECCCCCCCccCh------hhcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccChhhcccccCCeEEe
Confidence 777666543321 1233455666666666666666654432 4566666666666665444 3455556666666
Q ss_pred cCCC
Q 045303 734 SGMD 737 (1206)
Q Consensus 734 ~~~~ 737 (1206)
++|+
T Consensus 203 ~~Np 206 (290)
T 1p9a_G 203 HGNP 206 (290)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 6554
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=4.5e-16 Score=171.36 Aligned_cols=96 Identities=19% Similarity=0.328 Sum_probs=73.8
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
.+++|++|++++| .+..+| .+..+++|++|++++|.++.+|. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 4678888899988 777777 58888999999999998888877 888899999999988 566665 588888999999
Q ss_pred cCCCCccccCCcccCCcCccccC
Q 045303 578 NSNADELEEMPKGFGKLTCLLTL 600 (1206)
Q Consensus 578 l~~n~~~~~~p~~~~~l~~L~~L 600 (1206)
+++|. +..++. +..+++|++|
T Consensus 114 l~~n~-l~~~~~-l~~l~~L~~L 134 (308)
T 1h6u_A 114 LTSTQ-ITDVTP-LAGLSNLQVL 134 (308)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEE
T ss_pred CCCCC-CCCchh-hcCCCCCCEE
Confidence 98887 444432 4444444444
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=6.3e-16 Score=167.12 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=60.3
Q ss_pred ccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCccccccc-ccccCCCccce
Q 045303 497 NHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLC-KDMGNLTKLRH 575 (1206)
Q Consensus 497 ~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp-~~~~~L~~L~~ 575 (1206)
..+++|+.|++++| .+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++| .+..+| ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 34677888888887 666655 4777888888888888887764 5778888888888888 444444 34678888888
Q ss_pred eecCCCC
Q 045303 576 LRNSNAD 582 (1206)
Q Consensus 576 L~l~~n~ 582 (1206)
|++++|.
T Consensus 114 L~L~~n~ 120 (272)
T 3rfs_A 114 LVLVENQ 120 (272)
T ss_dssp EECTTSC
T ss_pred EECCCCc
Confidence 8888877
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.2e-15 Score=163.92 Aligned_cols=195 Identities=17% Similarity=0.124 Sum_probs=132.5
Q ss_pred ccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEecc
Q 045303 947 ALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWD 1026 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1026 (1206)
+++.++++++. ++.+|..+. .+++.|++++|.+.+..+..+.++++|++|+|++|.+.+..+ . ..+++|++|++++
T Consensus 11 ~l~~l~~~~~~-l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 11 SHLEVNCDKRN-LTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSH 86 (290)
T ss_dssp TCCEEECTTSC-CSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCS
T ss_pred CccEEECCCCC-CCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCC
Confidence 66777776643 444544332 678888888888777667777888888888888886555332 2 5677888888888
Q ss_pred ccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCcee
Q 045303 1027 CENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVS 1105 (1206)
Q Consensus 1027 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~ 1105 (1206)
|.+. .+|..+..+++|++|++++|.+.+..+.. ..+++|+.|++++|.+++ +|...|..+++|+.|++++ +.++.
T Consensus 87 N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~--N~l~~ 162 (290)
T 1p9a_G 87 NQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLAN--NNLTE 162 (290)
T ss_dssp SCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT--SCCSC
T ss_pred CcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc-cChhhcccccCCCEEECCC--CcCCc
Confidence 7765 46667777888888888888777655443 667788888888888774 4444677788888888865 45555
Q ss_pred cCCCCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCCCC-ccccceecccCChh
Q 045303 1106 LPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQGL-PKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1106 lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~-~~~L~~L~l~~c~~ 1170 (1206)
+|. ..+..+++|+.|++++| .++.+|...+ ..+|+.|++++||.
T Consensus 163 l~~--------------------~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 163 LPA--------------------GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCT--------------------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCH--------------------HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCCc
Confidence 553 12245667777777777 5666665332 45677777777664
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.63 E-value=2.6e-15 Score=174.18 Aligned_cols=316 Identities=12% Similarity=-0.002 Sum_probs=185.2
Q ss_pred CCCccccchhHHHHHHHHH-hcCCCCCCCCcEEEEE--EccCCCcHHHHHHHHhcCccccc---ccc-eeEEEEEcCCCC
Q 045303 87 TEPKVYGREKEKEKIIELL-LNDNLRADDGFSVISI--NGMGGVGKTTLAQLVYNDDRVQR---HFQ-IKGWTCVSDDFD 159 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vv~i--~G~~GiGKTtLa~~~~~~~~~~~---~f~-~~~wv~~~~~~~ 159 (1206)
.+..|+||+++++++.+++ ...........+.+.| +|++|+|||+||+++++...... .+. .++|+.+....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3467999999999999998 5321100023467777 99999999999999987422110 112 356777767778
Q ss_pred hHHHHHHHHHhccCCCCC-CCCHHHHHHHHHHHhC--CCceEEEEeCCCccC------HhhHHhhhccCCCC---C--CC
Q 045303 160 VPRVTKSILESIANVTVD-DNNLNSLQVKLKERLS--GKKFLLVLDDVWNEN------YIRWSELRCPFVAG---A--AG 225 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~~l~~~l~~~---~--~~ 225 (1206)
...++..++..++..... ..+...+...+.+.+. +++++|||||++... ...+..+...+... + .+
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999888654321 2345556666666664 679999999997632 12333222222111 2 45
Q ss_pred cEEEEEccchHHHhhc--------C-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcC------C
Q 045303 226 SKIVVTTRNLVVAERM--------R-ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCG------G 290 (1206)
Q Consensus 226 ~~iliTtr~~~~~~~~--------~-~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------g 290 (1206)
..+|+||+...+...+ . ....+.+.+++.++++++|...+..... ......+.+..|++.++ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCC
Confidence 6688888765432111 1 1123899999999999999765421110 01122467788999999 9
Q ss_pred cchHHHHHHhhh------CCC--CChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCCC--CCcccCH
Q 045303 291 LPLAAKTLGGLL------RGR--DDPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFP--KDYEFQE 360 (1206)
Q Consensus 291 ~Plal~~~~~~l------~~~--~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp--~~~~~~~ 360 (1206)
.|..+..+.... .+. -..+.+..+..... . ...+..++..||++.+.++..++.+. .+..+..
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~------~-~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE------A-ASIQTHELEALSIHELIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh------c-cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 997655443321 111 12233333332110 0 23455567889999999999888653 2334555
Q ss_pred HHHHHHHH--H-cCCcccccCCCCHHHHHHHHHHHHHhCCccccccC---CCCceeehHHH
Q 045303 361 EEIILLWT--A-EGFLDQEYSGRKMEDLGREFVRELHSRSLFQQSSK---GASRFVMHDLI 415 (1206)
Q Consensus 361 ~~l~~~w~--~-~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~---~~~~~~~H~lv 415 (1206)
..+...+. + ... . ...........++++|++.++|..... ...+|++|.+.
T Consensus 331 ~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 331 GLLRQRYEDASLTMY-N---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHS-C---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHhhc-C---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 55444332 2 110 0 001113446788999999999977543 13456666554
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=7.4e-18 Score=206.40 Aligned_cols=129 Identities=10% Similarity=0.013 Sum_probs=64.5
Q ss_pred CCcceeeeccccCcCccccccc-CCCccceeecc-----ccCCccccc------CCCCCCCCccEEEeccccCccccccc
Q 045303 969 TSLEEITILNLENLKSLPAGLH-NLHHLQKIWIG-----YCPNLESFP------EEGLPSTKLTELTIWDCENLKALPNC 1036 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~-----~n~~~~~~~------~~~~~l~~L~~L~L~~n~~~~~~p~~ 1036 (1206)
++|+.|.+..+.+.......+. .+++|+.|+++ +|...+..| ..+..+++|+.|+|++ .+....+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 5666665544444333222222 45667777766 222232111 1133456677777755 333333333
Q ss_pred cCC-CCccCeeeeecCCCCccCCCC--CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1037 MHN-LTSLLDLDIRGCPSVVSFPED--GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1037 ~~~-l~~L~~L~L~~n~~~~~~~~~--~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
+.. +++|++|+|++|.+.+..... ..+++|+.|+|++|.+++.........+++|+.|++++
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 515 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEES
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeC
Confidence 333 666777777776653321111 23566777777777664322222344566666666665
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.60 E-value=2e-14 Score=163.30 Aligned_cols=292 Identities=13% Similarity=0.089 Sum_probs=172.2
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-----CChH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-----FDVP 161 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~ 161 (1206)
.+..|+||++++++|.+ +.. +++.|+|++|+|||+|++++++. ... ..+|+.+... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 45679999999999998 621 49999999999999999999873 221 2567776542 3444
Q ss_pred HHHHHHHHhccC--------------------CC----C-----CCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH---
Q 045303 162 RVTKSILESIAN--------------------VT----V-----DDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY--- 209 (1206)
Q Consensus 162 ~~~~~i~~~l~~--------------------~~----~-----~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--- 209 (1206)
.+...+.+.+.. .. . .......+...+.+... ++++|||||++....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 444444433210 00 0 12334455555554333 499999999976432
Q ss_pred hhHHhhhccCCCCCCCcEEEEEccchHHHhh----------cC-C-CCceeCCCCChhhHHHHHHHhhhCCCCCCCChhh
Q 045303 210 IRWSELRCPFVAGAAGSKIVVTTRNLVVAER----------MR-A-DPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSL 277 (1206)
Q Consensus 210 ~~~~~l~~~l~~~~~~~~iliTtr~~~~~~~----------~~-~-~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~ 277 (1206)
.+|..+...+.....+.++|+|++....... .. . ...+.+.+|+.+|+.+++.......+. ....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~-- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKD-- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCC--
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCc--
Confidence 1222222222222247789999997643211 11 1 246899999999999999875421111 1111
Q ss_pred HHHHHHHHHhcCCcchHHHHHHhhhCCCCChhHHHHHHhhhccccCCCCchHHHHHhh---cCCChhHHHHHhhhcCCCC
Q 045303 278 KEVGEQIVIKCGGLPLAAKTLGGLLRGRDDPRDWEFVLKNDIWNLRDSDILPALRVSY---HFLPPQLKQCFAYCSLFPK 354 (1206)
Q Consensus 278 ~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~---~~L~~~~k~~~~~l~~fp~ 354 (1206)
...|++.++|+|+++..++..+........|......... ..+...+...+ ..+++..+.++..+|+ .
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g 302 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----KLILKEFENFLHGREIARKRYLNIMRTLSK--C 302 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--C
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHc--C
Confidence 1789999999999999998776432222233211100000 01112222111 1678899999999998 2
Q ss_pred CcccCHHHHHHHHH-HcCCcccccCCCCHHHHHHHHHHHHHhCCccccccCCCCcee-ehHHHHHHH
Q 045303 355 DYEFQEEEIILLWT-AEGFLDQEYSGRKMEDLGREFVRELHSRSLFQQSSKGASRFV-MHDLINDLA 419 (1206)
Q Consensus 355 ~~~~~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~~-~H~lv~~~~ 419 (1206)
. +...+..... ..|. ........++++.|++.++|.... ..|+ .|++++++.
T Consensus 303 ~---~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 303 G---KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp B---CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred C---CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 1 3444332210 1120 011244678899999999998754 2465 589998874
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.7e-15 Score=167.36 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=119.5
Q ss_pred ccceEEecccCCcccchhh---cCCCCcceeeeccccCcCccc----ccccCCCccceeeccccCCcccccCCCCCCCCc
Q 045303 947 ALKYLGVESCSKLESLAER---LDNTSLEEITILNLENLKSLP----AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKL 1019 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 1019 (1206)
+|++|++++|......+.. ....+|++|++++|.+.+..+ ..+..+++|++|+|++|.+.+..+..+..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 4666666666554444433 234677777777777665433 233457777777777777766666667777777
Q ss_pred cEEEeccccCccc--c--ccccCCCCccCeeeeecCCCCccCCC----CCCCCCcCeEEEeCcCCCCCCCccCCCCC---
Q 045303 1020 TELTIWDCENLKA--L--PNCMHNLTSLLDLDIRGCPSVVSFPE----DGFPTNLQSLEVRGLKISKPLPEWGFNRF--- 1088 (1206)
Q Consensus 1020 ~~L~L~~n~~~~~--~--p~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l--- 1088 (1206)
++|+|++|++.+. + +..+..+++|++|+|++|.+....+. ...+++|++|+|++|.+++..|. .+..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP-SAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-CCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh-hHHhccCc
Confidence 7777777776542 1 22335677777777777766432111 13456777777777777766554 33333
Q ss_pred CCcceEEeecCCCCceecCCCC-CCCcceeeccCCCCccccCCCCCcCcccccccccCC
Q 045303 1089 TSLRRFTICGGCPDLVSLPPFP-ASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCP 1146 (1206)
Q Consensus 1089 ~~L~~L~ls~~~~~l~~lp~~~-~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 1146 (1206)
++|++|++++ +.++.+|..+ .+|+.|++.++....+ ..+..+++|+.|++++|+
T Consensus 251 ~~L~~L~Ls~--N~l~~lp~~~~~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 251 SALNSLNLSF--AGLEQVPKGLPAKLRVLDLSSNRLNRA--PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp TTCCCEECCS--SCCCSCCSCCCSCCSCEECCSCCCCSC--CCTTSCCCCSCEECSSTT
T ss_pred CcCCEEECCC--CCCCchhhhhcCCCCEEECCCCcCCCC--chhhhCCCccEEECcCCC
Confidence 5777777765 5566666633 3455554444432221 235678999999999995
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=5e-15 Score=162.98 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=136.3
Q ss_pred cccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEec
Q 045303 946 QALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIW 1025 (1206)
Q Consensus 946 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1025 (1206)
++|+.|++++|. +..++.....++|++|++++|.+....+ +..+++|++|++++|.+.+ ++ .+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECC
Confidence 478888888874 4445555556889999999887765444 8888999999999987554 33 57778899999999
Q ss_pred cccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCcee
Q 045303 1026 DCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVS 1105 (1206)
Q Consensus 1026 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~ 1105 (1206)
+|.+.+. + .+..+++|++|++++|.+.+.. ....+++|+.|++++|.+++ ++. +..+++|+.|++++ +.+..
T Consensus 116 ~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~--n~l~~ 187 (308)
T 1h6u_A 116 STQITDV-T-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADD--NKISD 187 (308)
T ss_dssp TSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCS--SCCCC
T ss_pred CCCCCCc-h-hhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCC--CccCc
Confidence 9887764 3 3888899999999999876643 35677889999999998875 332 78888999999976 56666
Q ss_pred cCC--CCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCC
Q 045303 1106 LPP--FPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPE 1153 (1206)
Q Consensus 1106 lp~--~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~ 1153 (1206)
++. .+++|+.|++.++......+ ...+++|+.|++++|+ ++..|.
T Consensus 188 ~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 188 ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp CGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEE-EECCCE
T ss_pred ChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCe-eecCCe
Confidence 664 33344444444443222221 3567788888888874 555443
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=4.3e-14 Score=158.92 Aligned_cols=218 Identities=19% Similarity=0.111 Sum_probs=107.4
Q ss_pred ccccceEEecccCCcccchh-h-cCCCCcceeeeccccCcCcccc-cccCCCccce-eeccccCCcccccCCCCCCCCcc
Q 045303 945 PQALKYLGVESCSKLESLAE-R-LDNTSLEEITILNLENLKSLPA-GLHNLHHLQK-IWIGYCPNLESFPEEGLPSTKLT 1020 (1206)
Q Consensus 945 ~~~L~~L~l~~~~~l~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~ 1020 (1206)
|.+++.|++++|. ++.++. . ...++|++|++++|.+.+.+|. .|.++++|++ +.+++|++....|..+..+++|+
T Consensus 29 ~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 4455555555543 233332 1 2235566666666655554442 3455555544 33334444444445555556666
Q ss_pred EEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC---CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEee
Q 045303 1021 ELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED---GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTIC 1097 (1206)
Q Consensus 1021 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls 1097 (1206)
+|++++|.+....+..+....++..|++.++.....++.. .....++.|++++|.++ .+|...| ..++|++|+++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f-~~~~L~~l~l~ 185 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDELNLS 185 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS-TTEEEEEEECT
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc-cccchhHHhhc
Confidence 6666666555544444444455555555554333333322 12234555666666655 2333222 33455556555
Q ss_pred cCCCCceecCC-CCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCCCCCCCCCCccccceeccc
Q 045303 1098 GGCPDLVSLPP-FPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKLKYFPEQGLPKSLLQLHIK 1166 (1206)
Q Consensus 1098 ~~~~~l~~lp~-~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~~~~L~~L~l~ 1166 (1206)
+ ++.++.+|. .+..++.|...+++++.+...-...+.+|+.|.+.+|..++.+|...-+++|+.+++.
T Consensus 186 ~-~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 186 D-NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp T-CTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred c-CCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 3 455555554 3344444444444444443322234555555555555556666654445556666554
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=4.9e-14 Score=150.24 Aligned_cols=136 Identities=16% Similarity=0.103 Sum_probs=95.0
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
.+++.|++++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..|..+++|++|+|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 56777777777776666666777777777777777776666666777777777777777777666666777777777777
Q ss_pred ecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecC
Q 045303 1049 RGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLP 1107 (1206)
Q Consensus 1049 ~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp 1107 (1206)
++|.+.+..+.. ..+++|+.|+|++|.+++..+ ..|..+++|++|+|++ +.+..+|
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~--N~l~~~~ 171 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLST--NQLQSVP 171 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS--SCCSCCC
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCC--CcCCccC
Confidence 777776544443 567777777777777764333 3577777777777765 4444444
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=6.2e-14 Score=149.46 Aligned_cols=155 Identities=15% Similarity=0.058 Sum_probs=133.4
Q ss_pred CCccccceEEecccCCcccchhh-cCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccE
Q 045303 943 NLPQALKYLGVESCSKLESLAER-LDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTE 1021 (1206)
Q Consensus 943 ~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 1021 (1206)
.+++.++.|++++|......+.. ...++|++|++++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|++
T Consensus 32 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 35578999999988766555443 34589999999999998888888999999999999999888777778889999999
Q ss_pred EEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1022 LTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1022 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
|+|++|.+.+..+..|..+++|++|+|++|.+.+..+.. ..+++|+.|+|++|.+++..+ ..|..+++|+.|++++
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFG 188 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCS
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeC
Confidence 999999998877777899999999999999988766643 788999999999999986554 4789999999999987
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=2.1e-14 Score=156.44 Aligned_cols=168 Identities=20% Similarity=0.266 Sum_probs=116.9
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
.+++|+.|++++| .+..+|. +..+++|++|++++|.++.++. +..+++|++|++++| .+..+|. +..+++|++|+
T Consensus 44 ~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEE
T ss_pred hcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEE
Confidence 4677888888888 7777764 7888888888888888888777 888888888888888 5666654 88888888888
Q ss_pred cCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEe
Q 045303 578 NSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLE 657 (1206)
Q Consensus 578 l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 657 (1206)
+++|. +..++ .+.. +++|+.|+++
T Consensus 119 L~~n~-i~~~~-~l~~------------------------------------------------------l~~L~~L~l~ 142 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVH------------------------------------------------------LPQLESLYLG 142 (291)
T ss_dssp CTTSC-CCCCG-GGGG------------------------------------------------------CTTCCEEECC
T ss_pred CCCCc-CCCCh-hhcC------------------------------------------------------CCCCCEEEcc
Confidence 88887 33331 2333 3345555555
Q ss_pred ecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCC
Q 045303 658 WSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMD 737 (1206)
Q Consensus 658 ~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~ 737 (1206)
+|.+... ..+..+++|+.|++++|.+..++. +. .+++|+.|++++|.++.++.+..+++|+.|++++|.
T Consensus 143 ~n~l~~~--------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 143 NNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp SSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCcCCcc--------hhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCCChhhccCCCCCEEECcCCc
Confidence 5554432 123335566666666666666554 32 577778888887777767777777778888877765
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.50 E-value=2.6e-13 Score=152.50 Aligned_cols=219 Identities=19% Similarity=0.102 Sum_probs=164.9
Q ss_pred ccceEEEeccCCcccccc-CCCCccccceEEecccCCcccchhhc--CCCCcceeee-ccccCcCcccccccCCCcccee
Q 045303 923 TLEHLEVSSCSNLAFLTR-NGNLPQALKYLGVESCSKLESLAERL--DNTSLEEITI-LNLENLKSLPAGLHNLHHLQKI 998 (1206)
Q Consensus 923 ~l~~L~l~~~~~l~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l-~~~~~~~~~~~~~~~l~~L~~L 998 (1206)
+++.|+++++. ++.++. .....++|++|++++|..++.++... ..+++.++.+ .+|++....|..|.++++|++|
T Consensus 31 ~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 45555555543 444442 22334589999999998877765432 3466666544 4555555557789999999999
Q ss_pred eccccCCcccccCCCCCCCCccEEEeccccCcccc-ccccCCCC-ccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCC
Q 045303 999 WIGYCPNLESFPEEGLPSTKLTELTIWDCENLKAL-PNCMHNLT-SLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKI 1076 (1206)
Q Consensus 999 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l 1076 (1206)
++++|.+....+..+....++..|++.++.....+ +..|..+. .++.|++++|.+....+......+|+.|++++|..
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 99999887776667777788999999876555544 44666665 68999999999887555555667899999987655
Q ss_pred CCCCCccCCCCCCCcceEEeecCCCCceecCC-CCCCCcceeeccCCCCccccCCCCCcCcccccccccC
Q 045303 1077 SKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP-FPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDC 1145 (1206)
Q Consensus 1077 ~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~-~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n 1145 (1206)
.+.+|...|.++++|+.|++++ +.++.+|. .+.+|+.|...++.+++.++. ...+++|+.+++.++
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~--N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISR--TRIHSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTT--SCCCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred ccCCCHHHhccCcccchhhcCC--CCcCccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 5678887899999999999986 68999987 688999999999988887774 458999999998764
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.50 E-value=2.7e-15 Score=168.66 Aligned_cols=228 Identities=16% Similarity=0.198 Sum_probs=122.3
Q ss_pred CceeEEEecCCCCcccCCccccCccccceeeccccccc-c-ccccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 500 PRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQ-I-LPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~-~-lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
+.+++|++++| .+...+..+..+++|++|++++|.+. . +|..+..+++|++|++++|......|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 55666666666 44444444555666666666666655 2 555566666666666666643344555566666666666
Q ss_pred cCCCCccc--cCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceE
Q 045303 578 NSNADELE--EMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALS 655 (1206)
Q Consensus 578 l~~n~~~~--~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 655 (1206)
+++|..+. .++. .+..+++|++|+
T Consensus 149 L~~~~~l~~~~l~~------------------------------------------------------~~~~~~~L~~L~ 174 (336)
T 2ast_B 149 LSGCSGFSEFALQT------------------------------------------------------LLSSCSRLDELN 174 (336)
T ss_dssp CTTCBSCCHHHHHH------------------------------------------------------HHHHCTTCCEEE
T ss_pred CCCCCCCCHHHHHH------------------------------------------------------HHhcCCCCCEEc
Confidence 66662121 1222 233445566666
Q ss_pred Eeec-CCCcchhhHHHHhhcCCCCC-CccEEEEEecC--C--CCCCCCcCCCCCCCccEEEEcccC-C--CCCCCCCCCC
Q 045303 656 LEWS-ARSERCEFEADVLRMLKPHR-DVQELTITGYG--G--TKFPSWLGDSSFSKLARLELRLCM-S--TSLPSVGQLP 726 (1206)
Q Consensus 656 l~~n-~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~--~~~p~~~~~~~~~~L~~L~L~~~~-~--~~l~~l~~l~ 726 (1206)
+++| .++... ....+..++ +|+.|++++|. + ..+|..+. .+++|+.|++++|. + ..++.++.++
T Consensus 175 l~~~~~l~~~~-----~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 175 LSWCFDFTEKH-----VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp CCCCTTCCHHH-----HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCCCcChHH-----HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 6665 443210 111122244 66666666653 2 12333332 46777888888777 3 2344677778
Q ss_pred CCceeeecCCCCceeecc-cccCCCCCCCCCCccEEeccCcccccccccCCCCCcccccC-CcccEEeeccCcccccCCC
Q 045303 727 FLKELDISGMDGVVSVGS-VFYGNSCSVPFPSLETLSFSDMREWEEWIPCGAGQEVDEVF-PKLRKLSLRHCDKLQGTLP 804 (1206)
Q Consensus 727 ~L~~L~L~~~~~~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~lp 804 (1206)
+|+.|++++|........ .+.. +++|+.|+++++ +... ....+ .++..|++++ +++++..|
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~------~~~L~~L~l~~~--i~~~--------~~~~l~~~l~~L~l~~-n~l~~~~~ 310 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGE------IPTLKTLQVFGI--VPDG--------TLQLLKEALPHLQINC-SHFTTIAR 310 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGG------CTTCCEEECTTS--SCTT--------CHHHHHHHSTTSEESC-CCSCCTTC
T ss_pred CCCEeeCCCCCCCCHHHHHHHhc------CCCCCEEeccCc--cCHH--------HHHHHHhhCcceEEec-ccCccccC
Confidence 888888888763222111 1222 677777777766 1110 11112 2355666754 77776666
Q ss_pred CC
Q 045303 805 RR 806 (1206)
Q Consensus 805 ~~ 806 (1206)
..
T Consensus 311 ~~ 312 (336)
T 2ast_B 311 PT 312 (336)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=6e-14 Score=167.66 Aligned_cols=170 Identities=20% Similarity=0.271 Sum_probs=109.0
Q ss_pred cCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceee
Q 045303 498 HLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLR 577 (1206)
Q Consensus 498 ~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~ 577 (1206)
.++.|+.|++++| .+..+| .|..+++|++|+|++|.|..+|. +..+++|+.|+|++| .+..+| .+..+++|++|+
T Consensus 41 ~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 41 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEE
T ss_pred cCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEE
Confidence 4566667777776 566665 46667777777777777776665 667777777777777 455554 566777777777
Q ss_pred cCCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEe
Q 045303 578 NSNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLE 657 (1206)
Q Consensus 578 l~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 657 (1206)
|++|. +..++ . +..+++|+.|+|+
T Consensus 116 Ls~N~-l~~l~-~------------------------------------------------------l~~l~~L~~L~Ls 139 (605)
T 1m9s_A 116 LEHNG-ISDIN-G------------------------------------------------------LVHLPQLESLYLG 139 (605)
T ss_dssp CTTSC-CCCCG-G------------------------------------------------------GGGCTTCSEEECC
T ss_pred ecCCC-CCCCc-c------------------------------------------------------ccCCCccCEEECC
Confidence 77766 32221 1 2334455555555
Q ss_pred ecCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCC
Q 045303 658 WSARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMD 737 (1206)
Q Consensus 658 ~n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~ 737 (1206)
+|.+... ..+..+++|+.|++++|.+..++. +. .+++|+.|+|++|.+..++.+..+++|+.|+|++|.
T Consensus 140 ~N~l~~l--------~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 140 NNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp SSCCCCC--------GGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEE
T ss_pred CCccCCc--------hhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCc
Confidence 5554432 233445666667776666666655 33 577888888888887777777888888888888776
Q ss_pred Cc
Q 045303 738 GV 739 (1206)
Q Consensus 738 ~~ 739 (1206)
..
T Consensus 209 l~ 210 (605)
T 1m9s_A 209 CL 210 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=1.4e-15 Score=170.96 Aligned_cols=195 Identities=16% Similarity=0.153 Sum_probs=86.9
Q ss_pred CCCcceeeeccccCcCc-ccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccc-cCcc-ccccccCCCCccC
Q 045303 968 NTSLEEITILNLENLKS-LPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDC-ENLK-ALPNCMHNLTSLL 1044 (1206)
Q Consensus 968 ~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n-~~~~-~~p~~~~~l~~L~ 1044 (1206)
.++|++|++++|.+... ++..+..+++|++|+|++|.+.+..+..+..+++|++|+|++| .+.+ .++..+.++++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 34455555555543332 4444445555555555555444344444444555555555555 2222 1333444455555
Q ss_pred eeeeecC-CCCcc-CCCC-CCCC-CcCeEEEeCc--CCC-CCCCccCCCCCCCcceEEeecCCCCce-ecCC---CCCCC
Q 045303 1045 DLDIRGC-PSVVS-FPED-GFPT-NLQSLEVRGL--KIS-KPLPEWGFNRFTSLRRFTICGGCPDLV-SLPP---FPASL 1113 (1206)
Q Consensus 1045 ~L~L~~n-~~~~~-~~~~-~~~~-~L~~L~Ls~n--~l~-~~~p~~~~~~l~~L~~L~ls~~~~~l~-~lp~---~~~~L 1113 (1206)
+|++++| .+... ++.. ..++ +|++|++++| .++ +.+|. .+..+++|++|++++ |..++ ..+. .+++|
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~l~~-~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVHLDLSD-SVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSEEECTT-CTTCCGGGGGGGGGCTTC
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCEEeCCC-CCcCCHHHHHHHhCCCCC
Confidence 5555555 33321 1111 2334 5555555555 222 12222 234455555555544 22121 1111 22334
Q ss_pred cceeeccCCCCcccc-CCCCCcCcccccccccCCCCCCCCCCCC---ccccceecccCCh
Q 045303 1114 TGLEISDMPDLECLS-SIGENLTSLKYLYLIDCPKLKYFPEQGL---PKSLLQLHIKGCP 1169 (1206)
Q Consensus 1114 ~~L~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~l~~l~~~~~---~~~L~~L~l~~c~ 1169 (1206)
+.|++.+|....... .....+++|+.|++++| ++..++ ..+|+.|++++|.
T Consensus 250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCC
T ss_pred CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEeccc
Confidence 444444333111110 01245778888888887 343322 3457777776554
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=5e-13 Score=157.54 Aligned_cols=138 Identities=25% Similarity=0.284 Sum_probs=96.8
Q ss_pred ccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEecc
Q 045303 947 ALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWD 1026 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1026 (1206)
+++.|++++|. +..+|..+ .++|++|++++|.+. .+| ..+++|++|+|++|.+.+ +|. +.. +|++|+|++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~l-~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDNL-PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCSCC-CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCHhH-cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 67778887775 34455433 267888888888765 566 346788888888886655 555 443 788888888
Q ss_pred ccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceec
Q 045303 1027 CENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSL 1106 (1206)
Q Consensus 1027 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~l 1106 (1206)
|.+.+ +|. .+++|+.|+|++|.+.+ +|. .+++|+.|+|++|.+++ +|. |. ++|+.|+|++ |.++.+
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~--l~--~~L~~L~Ls~--N~L~~l 195 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE--LP--ESLEALDVST--NLLESL 195 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CC--TTCCEEECCS--SCCSSC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch--hh--CCCCEEECcC--CCCCch
Confidence 87766 554 57788888888887765 444 56788888888888775 665 33 7888888865 466677
Q ss_pred CC
Q 045303 1107 PP 1108 (1206)
Q Consensus 1107 p~ 1108 (1206)
|.
T Consensus 196 p~ 197 (571)
T 3cvr_A 196 PA 197 (571)
T ss_dssp CC
T ss_pred hh
Confidence 65
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=5.7e-15 Score=169.20 Aligned_cols=89 Identities=25% Similarity=0.206 Sum_probs=60.2
Q ss_pred HHhccCCceeEEEecCCCCccc-----CCccccCccccceeeccccccc----cccccc-------cccccccEEecCCC
Q 045303 494 MLLNHLPRLRVFSLCGYSNIFS-----LPNEIGNLKHLRCLNLSRTRIQ----ILPESI-------NSLYNLHTILLEDC 557 (1206)
Q Consensus 494 ~~~~~~~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp~~~-------~~L~~L~~L~L~~n 557 (1206)
..+..+++|++|+|++| .+.. ++..|..+++|++|+|++|.+. .+|..+ ..+++|++|+|++|
T Consensus 26 ~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 34666777888888887 4443 3344667788888888876443 334433 57788888888887
Q ss_pred cccc----cccccccCCCccceeecCCCCc
Q 045303 558 WKLK----KLCKDMGNLTKLRHLRNSNADE 583 (1206)
Q Consensus 558 ~~~~----~lp~~~~~L~~L~~L~l~~n~~ 583 (1206)
.... .+|..+..+++|++|+|++|.+
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 4333 3666777788888888888773
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=5e-13 Score=138.66 Aligned_cols=129 Identities=14% Similarity=0.085 Sum_probs=102.0
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
.+++.|++++|.+....+..|..+++|++|+|++|.+.+..|..+.++++|++|+|++|.+....+..|.++++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 56777777777776666667888888888888888877777788888888888888888887666666788888888888
Q ss_pred ecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1049 RGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1049 ~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
++|.+.+..+.. ..+++|+.|+|++|.+++..+. .|..+++|+.|++++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCS
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEeCC
Confidence 888887765554 6778888888888888754443 678888888888876
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=4.5e-13 Score=138.22 Aligned_cols=155 Identities=14% Similarity=0.036 Sum_probs=107.8
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|+|++|.+.+..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45667777777666555556777888888888888766555555677788888888888777666666778888888888
Q ss_pred ecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccc
Q 045303 1049 RGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECL 1127 (1206)
Q Consensus 1049 ~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~ 1127 (1206)
++|.+.+..+.. ..+++|+.|++++|.+++ ++...+..+++|++|++++| .+.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N-------------------------~~~ 161 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN-------------------------PWD 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSC-------------------------CBC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEecCC-------------------------Cee
Confidence 888777655443 667788888888888774 34335777788888887652 111
Q ss_pred cCCCCCcCcccccccccCCCCCCCCC
Q 045303 1128 SSIGENLTSLKYLYLIDCPKLKYFPE 1153 (1206)
Q Consensus 1128 ~~~~~~l~~L~~L~l~~n~~l~~l~~ 1153 (1206)
..+++|+.|+++.|.....+|.
T Consensus 162 ----~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ----cCCCCHHHHHHHHHhCCceeec
Confidence 2456777777777765556654
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=7.2e-13 Score=137.43 Aligned_cols=129 Identities=15% Similarity=0.066 Sum_probs=107.4
Q ss_pred CCcceeeeccccCcCccc-ccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeee
Q 045303 969 TSLEEITILNLENLKSLP-AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLD 1047 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 1047 (1206)
..+++|++++|.+.+..+ ..|.++++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..|.++++|++|+
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 111 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence 456788888887766544 4578899999999999987777777888899999999999999888888889999999999
Q ss_pred eecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1048 IRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1048 L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
|++|.+.+..|.. ..+++|+.|+|++|.+++..|. .|..+++|+.|++++
T Consensus 112 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLA 162 (220)
T ss_dssp CTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCS
T ss_pred CCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecC
Confidence 9999988776654 7788999999999999876665 788899999999976
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=4.6e-13 Score=136.56 Aligned_cols=147 Identities=15% Similarity=0.149 Sum_probs=115.8
Q ss_pred cccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEec
Q 045303 946 QALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIW 1025 (1206)
Q Consensus 946 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1025 (1206)
++|+.|++++|..- .++.....++|++|++++|.. ..+ ..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHA-TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCC-SCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCC-Ccc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 36666777665433 444444558888999988843 333 367889999999999998887778888889999999999
Q ss_pred cccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1026 DCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1026 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
+|.+.+..|..+..+++|++|++++|...+.++....+++|+.|++++|.+++ ++ .+..+++|++|++++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFS 190 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECB
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeC
Confidence 99988878888899999999999999845556656778899999999999875 43 578889999999987
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=6.4e-13 Score=156.65 Aligned_cols=179 Identities=22% Similarity=0.219 Sum_probs=112.2
Q ss_pred ccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccc
Q 045303 923 TLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGY 1002 (1206)
Q Consensus 923 ~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 1002 (1206)
+++.|+++++. ++.++. .++++|+.|++++|..- .+| ...++|+.|++++|.+.+ +|. +.+ +|++|+|++
T Consensus 60 ~L~~L~Ls~n~-L~~lp~--~l~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPD--NLPPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSC-CSCCCS--CCCTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCC-CCccCH--hHcCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 56677777664 444442 23467788888777543 555 334778888888776655 665 543 788888888
Q ss_pred cCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCc
Q 045303 1003 CPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPE 1082 (1206)
Q Consensus 1003 n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~ 1082 (1206)
|.+.+ +|. .+++|+.|+|++|.+.+ +|. .+++|++|+|++|.+.+ +|. ..++|+.|+|++|.++ .+|.
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~--l~~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE--LPESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-SCCC
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch--hhCCCCEEECcCCCCC-chhh
Confidence 76655 554 46778888888777665 554 56778888888887766 444 2277888888888776 4554
Q ss_pred cCCCCCCCc-------ceEEeecCCCCceecCCCCCCCcceeeccCCCCccccC
Q 045303 1083 WGFNRFTSL-------RRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSS 1129 (1206)
Q Consensus 1083 ~~~~~l~~L-------~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~ 1129 (1206)
+.. +| +.|+|++ |.++.+|..+..+..|...++++|.+.+.
T Consensus 198 --~~~--~L~~~~~~L~~L~Ls~--N~l~~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 198 --VPV--RNHHSEETEIFFRCRE--NRITHIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp --CC----------CCEEEECCS--SCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred --HHH--hhhcccccceEEecCC--CcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 322 55 7777765 56666666444455555555555544443
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.4e-12 Score=134.58 Aligned_cols=156 Identities=20% Similarity=0.123 Sum_probs=120.2
Q ss_pred cccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CC
Q 045303 984 SLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GF 1062 (1206)
Q Consensus 984 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~ 1062 (1206)
.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+.. ..
T Consensus 21 ~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 21 SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 445433 468999999999887766667788999999999999988777777899999999999999888655544 67
Q ss_pred CCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCCCCcCccccccc
Q 045303 1063 PTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYL 1142 (1206)
Q Consensus 1063 ~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l 1142 (1206)
+++|++|++++|.+++. +...|..+++|++|++++ +.++.+|. ..+..+++|+.|++
T Consensus 99 l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~--N~l~~~~~--------------------~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSL-PDGVFDKLTQLKDLRLYQ--NQLKSVPD--------------------GVFDRLTSLQYIWL 155 (208)
T ss_dssp CTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS--SCCSCCCT--------------------TTTTTCTTCCEEEC
T ss_pred ccCCCEEEcCCCcCccc-CHhHhccCCcCCEEECCC--CccceeCH--------------------HHhccCCCccEEEe
Confidence 89999999999999854 444688899999999976 34444442 12346789999999
Q ss_pred ccCCCCCCCCCCCCccccceecccCChh
Q 045303 1143 IDCPKLKYFPEQGLPKSLLQLHIKGCPL 1170 (1206)
Q Consensus 1143 ~~n~~l~~l~~~~~~~~L~~L~l~~c~~ 1170 (1206)
++|+.... +++|+.|+++.|..
T Consensus 156 ~~N~~~~~------~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 156 HDNPWDCT------CPGIRYLSEWINKH 177 (208)
T ss_dssp CSCCBCCC------TTTTHHHHHHHHHC
T ss_pred cCCCeecC------CCCHHHHHHHHHhC
Confidence 99964433 45678887776654
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.1e-12 Score=137.17 Aligned_cols=128 Identities=18% Similarity=0.149 Sum_probs=101.9
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
++|++|++++|.+.+..|..|.++++|++|+|++|.+....+..+..+++|++|+|++|.+.+..+..|..+++|++|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 67888888888888777888888888999999888775555556778888899999888888776777888888999999
Q ss_pred ecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1049 RGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1049 ~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
++|.+.. +|.. ..+++|+.|+|++|.+++ +|...|..+++|+.|++++
T Consensus 120 s~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 120 CCNKLTE-LPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp CSSCCCS-CCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred cCCcccc-cCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeC
Confidence 8888774 4433 677888888888888875 4444788888888888876
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.40 E-value=1.6e-12 Score=134.78 Aligned_cols=130 Identities=17% Similarity=0.136 Sum_probs=106.5
Q ss_pred eeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCC
Q 045303 973 EITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCP 1052 (1206)
Q Consensus 973 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 1052 (1206)
.++.+++. ++.+|..+. ++|+.|++++|.+.+..+..+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 15 ~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKG-LTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSC-CSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCC-cCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34444443 345565554 789999999998887777788999999999999999998889999999999999999999
Q ss_pred CCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCC
Q 045303 1053 SVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPP 1108 (1206)
Q Consensus 1053 ~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~ 1108 (1206)
+....+.. ..+++|+.|+|++|.+++..|. .|..+++|+.|+|++ |.++.++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~--N~l~~~~~ 145 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYD--NKLQTIAK 145 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS--SCCSCCCT
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCC--CcCCEECH
Confidence 88655544 6789999999999999976665 799999999999986 55666554
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=1.4e-13 Score=147.21 Aligned_cols=166 Identities=21% Similarity=0.217 Sum_probs=108.3
Q ss_pred CCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccceeec
Q 045303 499 LPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLRHLRN 578 (1206)
Q Consensus 499 ~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~~L~l 578 (1206)
+.++..++++++ .+..++ .+..+++|++|++++|.|+.+| .+..+++|++|++++| .+..+|. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 344556667776 666666 5777888888888888888777 5777888888888888 5666665 778888888888
Q ss_pred CCCCccccCCcccCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEee
Q 045303 579 SNADELEEMPKGFGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEW 658 (1206)
Q Consensus 579 ~~n~~~~~~p~~~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 658 (1206)
++|. +..+|.... ++|+.|++++
T Consensus 93 ~~N~-l~~l~~~~~--------------------------------------------------------~~L~~L~L~~ 115 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--------------------------------------------------------ACLSRLFLDN 115 (263)
T ss_dssp CSSC-CSCCTTCCC--------------------------------------------------------SSCCEEECCS
T ss_pred CCCc-cCCcCcccc--------------------------------------------------------CcccEEEccC
Confidence 8877 333332110 3455555555
Q ss_pred cCCCcchhhHHHHhhcCCCCCCccEEEEEecCCCCCCCCcCCCCCCCccEEEEcccCCCCCCCCCCCCCCceeeecCCC
Q 045303 659 SARSERCEFEADVLRMLKPHRDVQELTITGYGGTKFPSWLGDSSFSKLARLELRLCMSTSLPSVGQLPFLKELDISGMD 737 (1206)
Q Consensus 659 n~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~l~~l~~l~~L~~L~L~~~~ 737 (1206)
|.+... ..+..+++|+.|++++|.+..++ .+. .+++|+.|++++|.+..++.+..+++|+.|++++|.
T Consensus 116 N~l~~~--------~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 116 NELRDT--------DSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SCCSBS--------GGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred CccCCC--------hhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence 554432 12334555666666666655554 232 467777777777777666667777777777777765
No 113
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.4e-11 Score=140.99 Aligned_cols=296 Identities=13% Similarity=0.027 Sum_probs=179.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccc----cc--cceeEEEEEcCCC-Ch
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RH--FQIKGWTCVSDDF-DV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~----~~--f~~~~wv~~~~~~-~~ 160 (1206)
+..++||+++++++..++..... ....+.+.|+|++|+|||++|+.+++..... .. ....+|+.+.... +.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 96 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTP 96 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCH
Confidence 37799999999999988865321 2345689999999999999999998732111 01 2345677776666 78
Q ss_pred HHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhh-hccCCCCCCCcEEEEEccchHH
Q 045303 161 PRVTKSILESIANVTV--DDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSEL-RCPFVAGAAGSKIVVTTRNLVV 237 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l-~~~l~~~~~~~~iliTtr~~~~ 237 (1206)
..++..++..+.+... ...........+.+.+..++.+|||||++......+... ...+.....+..+|+||+....
T Consensus 97 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~ 176 (384)
T 2qby_B 97 QAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINV 176 (384)
T ss_dssp HHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTT
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCch
Confidence 8888888888743322 223345667777778877666999999976432111111 1122111167889999987532
Q ss_pred H----hhc--CCCCceeCCCCChhhHHHHHHHhhhC-CCCCCCChhhHHHHHHHHHhcC---Ccch-HHHHHHhh--hCC
Q 045303 238 A----ERM--RADPVYQLKKLSDDDCLCVLTQISLG-ARDFTRHQSLKEVGEQIVIKCG---GLPL-AAKTLGGL--LRG 304 (1206)
Q Consensus 238 ~----~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~--l~~ 304 (1206)
. ... .....+.+++++.++..+++...+.. ...... ..+..+.+++.++ |.|. |+..+... +..
T Consensus 177 ~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 177 RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY---DDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC---CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 1 111 11238999999999999999987531 111111 2355677788887 8876 44333222 221
Q ss_pred ---CCChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccCCCC
Q 045303 305 ---RDDPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYSGRK 381 (1206)
Q Consensus 305 ---~~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~ 381 (1206)
.-..+.+..++... ....+..++..|+++.+..+..++....+-++. .......-..| . ...
T Consensus 254 ~~~~i~~~~v~~~~~~~--------~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~-----~~~ 318 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDY--------EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q-----KPL 318 (384)
T ss_dssp SSSCCCHHHHHHHHHHH--------HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C-----CCC
T ss_pred CCCccCHHHHHHHHHHH--------hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C-----CCC
Confidence 12455666555432 124577788999999998888777611100110 01111111112 1 112
Q ss_pred HHHHHHHHHHHHHhCCcccccc
Q 045303 382 MEDLGREFVRELHSRSLFQQSS 403 (1206)
Q Consensus 382 ~~~~~~~~l~~L~~~~ll~~~~ 403 (1206)
......+++..|...|+++...
T Consensus 319 ~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 319 SYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHhCCCEEEEe
Confidence 2355778899999999998743
No 114
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=6.5e-13 Score=144.59 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=85.5
Q ss_pred ccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEecc
Q 045303 947 ALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWD 1026 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 1026 (1206)
+|+.|++++|. +..++.....++|+.|++++|.+.+..+ +.++++|++|++++|.+.+ ++ .+..+++|++|++++
T Consensus 47 ~L~~L~l~~~~-i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 47 SIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp TCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred cccEEEccCCC-cccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 55555555553 2333333344667777777766554433 6667777777777775444 22 256667777777777
Q ss_pred ccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1027 CENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1027 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
|.+.+. ..+..+++|++|++++|.+.+. +....+++|+.|++++|.+++..+ +..+++|+.|++++
T Consensus 122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 122 NGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSK 187 (291)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred CcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCC
Confidence 766553 3466677777777777766553 334566677777777777664332 56667777777755
No 115
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.39 E-value=2.3e-11 Score=139.54 Aligned_cols=298 Identities=14% Similarity=0.023 Sum_probs=181.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccc-cceeEEEEEcCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-FQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
++.++||+++++++..++........+..+.+.|+|++|+|||++|+.++.. .... -..++|+.+....+...+...
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 4679999999999999987531101122348999999999999999999873 2222 124566776777778889999
Q ss_pred HHHhccCCCC-CCCCHHHHHHHHHHHhC--CCceEEEEeCCCccCHhhHHhhhccCCCCC----CCcEEEEEccchHHHh
Q 045303 167 ILESIANVTV-DDNNLNSLQVKLKERLS--GKKFLLVLDDVWNENYIRWSELRCPFVAGA----AGSKIVVTTRNLVVAE 239 (1206)
Q Consensus 167 i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~----~~~~iliTtr~~~~~~ 239 (1206)
++..++.... ...........+...+. +++.+||+|+++..+......+...+.... .+..+|++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 8888864322 12345556666665553 568899999998765545555544432211 4677888887654332
Q ss_pred hcC-------CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhc---------CCcchHHHHHHhhh-
Q 045303 240 RMR-------ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKC---------GGLPLAAKTLGGLL- 302 (1206)
Q Consensus 240 ~~~-------~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l- 302 (1206)
.+. ....+.+.+++.++..+++...+..... ...-..+..+.+++.+ +|.|..+..+....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 221 1236899999999999999887632110 1122346778888888 78875443332221
Q ss_pred --C---CC--CChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCCC---CCcccCHHHHHHHHHH---
Q 045303 303 --R---GR--DDPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFP---KDYEFQEEEIILLWTA--- 369 (1206)
Q Consensus 303 --~---~~--~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp---~~~~~~~~~l~~~w~~--- 369 (1206)
. +. -..+....+.... .... +...+..|+.+.+.++..++.+. .+-.+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~----~~~~----~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEV----LFGI----SEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHH----SCCC----CHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHH----hhhh----HHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 1 11 1222222222211 1112 23345678888888888777543 2213445555444332
Q ss_pred -cCCcccccCCCCHHHHHHHHHHHHHhCCcccccc
Q 045303 370 -EGFLDQEYSGRKMEDLGREFVRELHSRSLFQQSS 403 (1206)
Q Consensus 370 -~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 403 (1206)
.|.. ........+++++|...|+|....
T Consensus 324 ~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 324 EYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 1211 111345778999999999998754
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=3.5e-14 Score=162.55 Aligned_cols=243 Identities=14% Similarity=0.093 Sum_probs=138.9
Q ss_pred cccCCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEecCCCCcc----cCCccc-------cCccccceeecc
Q 045303 464 SVSDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIF----SLPNEI-------GNLKHLRCLNLS 532 (1206)
Q Consensus 464 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~lp~~~-------~~l~~L~~L~Ls 532 (1206)
.+..++.++.|.+.+.. ........+...+..+++|++|+|++| .+. .+|..+ ..+++|++|+|+
T Consensus 27 ~l~~~~~L~~L~L~~n~---i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT---IGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHHCSCCCEEECTTSE---ECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHhcCCCccEEECCCCC---CCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 45567778888776542 111223334556889999999999997 443 345444 789999999999
Q ss_pred cccccc-----ccccccccccccEEecCCCccccc----ccccccCC---------CccceeecCCCCcc-ccCC---cc
Q 045303 533 RTRIQI-----LPESINSLYNLHTILLEDCWKLKK----LCKDMGNL---------TKLRHLRNSNADEL-EEMP---KG 590 (1206)
Q Consensus 533 ~n~i~~-----lp~~~~~L~~L~~L~L~~n~~~~~----lp~~~~~L---------~~L~~L~l~~n~~~-~~~p---~~ 590 (1206)
+|.+.. +|..+..+++|++|+|++|..... ++..+..+ ++|++|++++|.+. ..+| ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999985 788899999999999999954322 33334445 89999999999843 2333 23
Q ss_pred cCCcCccccCCceEeCCCCCCCcccccCcccCCceeEEecccCCCCcccccccccCCCCCCCceEEeecCCCcchhhHHH
Q 045303 591 FGKLTCLLTLGRFVVGKDSGSGLRELKSLTHLRGTLEISKLENVKDVGDASEAQLNNKVNLQALSLEWSARSERCEFEAD 670 (1206)
Q Consensus 591 ~~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~ 670 (1206)
+..+++|++|++..+..... ......+..+..+++|+.|+|++|.++... ...
T Consensus 183 l~~~~~L~~L~L~~n~l~~~-------------------------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--~~~ 235 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPE-------------------------GIEHLLLEGLAYCQELKVLDLQDNTFTHLG--SSA 235 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHH-------------------------HHHHHHHTTGGGCTTCCEEECCSSCCHHHH--HHH
T ss_pred HHhCCCcCEEECcCCCCCHh-------------------------HHHHHHHHHhhcCCCccEEECcCCCCCcHH--HHH
Confidence 44555555553322110000 000011124555666777777666643211 111
Q ss_pred HhhcCCCCCCccEEEEEecCCCCC-----CCCcCCCCCCCccEEEEcccCCCC-----CC-CC-CCCCCCceeeecCCC
Q 045303 671 VLRMLKPHRDVQELTITGYGGTKF-----PSWLGDSSFSKLARLELRLCMSTS-----LP-SV-GQLPFLKELDISGMD 737 (1206)
Q Consensus 671 ~~~~l~~~~~L~~L~l~~~~~~~~-----p~~~~~~~~~~L~~L~L~~~~~~~-----l~-~l-~~l~~L~~L~L~~~~ 737 (1206)
....+..+++|+.|++++|.+... |.++....+++|+.|+|++|.+.. ++ .+ ..+++|+.|++++|.
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 222344455566666665554322 232211124555555555555532 33 22 335555555555554
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.5e-12 Score=132.74 Aligned_cols=129 Identities=14% Similarity=0.068 Sum_probs=108.3
Q ss_pred cccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEec
Q 045303 946 QALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIW 1025 (1206)
Q Consensus 946 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1025 (1206)
++|+.|++++| .+..++.....++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 66 ~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 66 HNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp TTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred CCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 47788888877 55555555567899999999999988788889999999999999999888777888899999999999
Q ss_pred cccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCeEEEeCcCCC
Q 045303 1026 DCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQSLEVRGLKIS 1077 (1206)
Q Consensus 1026 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~ 1077 (1206)
+|...+.+| .+..+++|++|++++|.+.+ ++....+++|+.|++++|++.
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC---
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcccC
Confidence 998566666 68999999999999999876 445578899999999999975
No 118
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.38 E-value=6.5e-14 Score=158.41 Aligned_cols=90 Identities=14% Similarity=0.209 Sum_probs=50.6
Q ss_pred HHHHhccCCceeEEEecCCCCcccCC-----ccccCcc-ccceeeccccccccc-ccccccc-----ccccEEecCCCcc
Q 045303 492 LKMLLNHLPRLRVFSLCGYSNIFSLP-----NEIGNLK-HLRCLNLSRTRIQIL-PESINSL-----YNLHTILLEDCWK 559 (1206)
Q Consensus 492 ~~~~~~~~~~L~~L~L~~~~~~~~lp-----~~~~~l~-~L~~L~Ls~n~i~~l-p~~~~~L-----~~L~~L~L~~n~~ 559 (1206)
++.++...++|++|+|++| .+...+ ..|.+++ +|++|+|++|.|... +..+..+ ++|++|+|++|..
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 92 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL 92 (362)
T ss_dssp HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence 3444555555777777776 555554 4455666 677777777666633 3444443 6666666666633
Q ss_pred ccccccc----ccCC-CccceeecCCCC
Q 045303 560 LKKLCKD----MGNL-TKLRHLRNSNAD 582 (1206)
Q Consensus 560 ~~~lp~~----~~~L-~~L~~L~l~~n~ 582 (1206)
....+.. +..+ ++|++|++++|.
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc
Confidence 3233332 2333 566666666665
No 119
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=9.7e-12 Score=142.74 Aligned_cols=297 Identities=15% Similarity=0.026 Sum_probs=178.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccc----cccceeEEEEEcCCCChHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQIKGWTCVSDDFDVPR 162 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~ 162 (1206)
.+..++||+++++++..++..... ....+.+.|+|++|+|||++|+.+++..... +.-...+|+.+....+...
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 347799999999999998865321 2345689999999999999999998732111 0012456777777778888
Q ss_pred HHHHHHHhccCCCCC-CCCHHHHHHHHHHHhC--CCceEEEEeCCCccCHh--hHHhh---hccCCCC--CCCcEEEEEc
Q 045303 163 VTKSILESIANVTVD-DNNLNSLQVKLKERLS--GKKFLLVLDDVWNENYI--RWSEL---RCPFVAG--AAGSKIVVTT 232 (1206)
Q Consensus 163 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~~--~~~~l---~~~l~~~--~~~~~iliTt 232 (1206)
++..++..++..... .....+....+...+. +++.+||+|+++..... ..+.+ ....... ..+..+|+||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 899999888653322 2345566666666663 46889999999764322 11222 2211111 3466788888
Q ss_pred cchHHHhhc-----CCC--CceeCCCCChhhHHHHHHHhhhCC-CCCCCChhhHHHHHHHHHhcC---Ccch-HHHHHHh
Q 045303 233 RNLVVAERM-----RAD--PVYQLKKLSDDDCLCVLTQISLGA-RDFTRHQSLKEVGEQIVIKCG---GLPL-AAKTLGG 300 (1206)
Q Consensus 233 r~~~~~~~~-----~~~--~~~~l~~l~~~e~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~ 300 (1206)
+.......+ ... ..+.+++++.++..+++...+... .....+ .++.+.+++.++ |.|- ++..+..
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 765321111 111 368999999999999998875320 111112 245667778887 9994 3333222
Q ss_pred hh---C--CC--CChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhc-CCCCCcccCHHHHHHHHH----
Q 045303 301 LL---R--GR--DDPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCS-LFPKDYEFQEEEIILLWT---- 368 (1206)
Q Consensus 301 ~l---~--~~--~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~-~fp~~~~~~~~~l~~~w~---- 368 (1206)
.. . +. -..+.+..+.... ....+..++..++++.+..+..++ ++.....+....+.+...
T Consensus 252 a~~~a~~~~~~~i~~~~v~~a~~~~--------~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 252 AGEIAERRREERVRREHVYSARAEI--------ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHHHTTCSCBCHHHHHHHHHHH--------HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHH--------hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 21 1 11 2345555554432 123566778999999988887776 443222344443333221
Q ss_pred HcCCcccccCCCCHHHHHHHHHHHHHhCCccccc
Q 045303 369 AEGFLDQEYSGRKMEDLGREFVRELHSRSLFQQS 402 (1206)
Q Consensus 369 ~~g~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 402 (1206)
..| . .......+..+++.|...|+++..
T Consensus 324 ~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 112 1 112235577889999999999874
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.35 E-value=2.6e-12 Score=153.57 Aligned_cols=119 Identities=17% Similarity=0.144 Sum_probs=50.3
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
++|+.|++++|.+....+ +..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|
T Consensus 65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 138 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYL 138 (605)
T ss_dssp TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEEC
Confidence 444444444444333222 4444444444444443322 11 334444444444444444331 22444444444444
Q ss_pred ecCCCCccCCCCCCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEee
Q 045303 1049 RGCPSVVSFPEDGFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTIC 1097 (1206)
Q Consensus 1049 ~~n~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls 1097 (1206)
++|.+.+. +....+++|+.|+|++|.+.+..| +..+++|+.|+|+
T Consensus 139 s~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 139 GNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLS 183 (605)
T ss_dssp CSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred CCCccCCc-hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECc
Confidence 44444332 222344444444444444443322 3444444444443
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=1.9e-12 Score=145.99 Aligned_cols=155 Identities=13% Similarity=0.013 Sum_probs=108.2
Q ss_pred CCccccceEEecccCCcccchhhc--CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCcc
Q 045303 943 NLPQALKYLGVESCSKLESLAERL--DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLT 1020 (1206)
Q Consensus 943 ~~~~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1020 (1206)
.++..++.|++++|..-...+..+ ...+|+.|++++|.+....+..|.++++|++|+|++|.+....+..+..+++|+
T Consensus 36 ~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 36 SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 355667778887775444333333 457788888888877766666777888888888888876666566677788888
Q ss_pred EEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC----CCCCCcCeEEEeCcCCCCCCCccCCCCCCC--cceE
Q 045303 1021 ELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED----GFPTNLQSLEVRGLKISKPLPEWGFNRFTS--LRRF 1094 (1206)
Q Consensus 1021 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~--L~~L 1094 (1206)
+|+|++|.+....|..|.++++|+.|+|++|.+....+.. ..+++|+.|+|++|.++. +|...+..++. |+.|
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSCHHHHTTE
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhccHhhcceE
Confidence 8888888877777777888888888888888776533322 347788888888888773 44435666666 3777
Q ss_pred Eeec
Q 045303 1095 TICG 1098 (1206)
Q Consensus 1095 ~ls~ 1098 (1206)
+|++
T Consensus 195 ~l~~ 198 (361)
T 2xot_A 195 YLHN 198 (361)
T ss_dssp ECCS
T ss_pred EecC
Confidence 7766
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=3.2e-12 Score=144.22 Aligned_cols=154 Identities=16% Similarity=0.072 Sum_probs=124.5
Q ss_pred eEEecccCCcccchhhcCCCCcceeeeccccCcCccccccc-CCCccceeeccccCCcccccCCCCCCCCccEEEecccc
Q 045303 950 YLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLH-NLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCE 1028 (1206)
Q Consensus 950 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 1028 (1206)
.++++++ .++.+|..+ ...++.|++++|.+....+..+. ++++|++|+|++|.+.+..+..+..+++|++|+|++|.
T Consensus 22 ~l~c~~~-~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQ-QLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSS-CCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCC-CcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 3444433 344455433 25689999999998877777777 89999999999998888777889999999999999999
Q ss_pred CccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCC---CCCCCcceEEeecCCCCce
Q 045303 1029 NLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGF---NRFTSLRRFTICGGCPDLV 1104 (1206)
Q Consensus 1029 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~---~~l~~L~~L~ls~~~~~l~ 1104 (1206)
+....+..|.++++|++|+|++|.+....+.. ..+++|+.|+|++|.+++ +|...| ..+++|+.|+|++ |.+.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~--N~l~ 176 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSS--NKLK 176 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCS--SCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCC--CCCC
Confidence 98877788999999999999999998766654 788999999999999985 665566 5799999999986 6777
Q ss_pred ecCC
Q 045303 1105 SLPP 1108 (1206)
Q Consensus 1105 ~lp~ 1108 (1206)
.+|.
T Consensus 177 ~l~~ 180 (361)
T 2xot_A 177 KLPL 180 (361)
T ss_dssp CCCH
T ss_pred ccCH
Confidence 7774
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=1.5e-12 Score=129.09 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=107.9
Q ss_pred CCcceeeeccccCc-CcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeee
Q 045303 969 TSLEEITILNLENL-KSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLD 1047 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 1047 (1206)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 66777788887766 57788788899999999999976654 6778889999999999998887888888899999999
Q ss_pred eecCCCCccC--CCCCCCCCcCeEEEeCcCCCCCCC--ccCCCCCCCcceEEeecCCCCceecCC
Q 045303 1048 IRGCPSVVSF--PEDGFPTNLQSLEVRGLKISKPLP--EWGFNRFTSLRRFTICGGCPDLVSLPP 1108 (1206)
Q Consensus 1048 L~~n~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~p--~~~~~~l~~L~~L~ls~~~~~l~~lp~ 1108 (1206)
+++|.+.+.. +....+++|+.|++++|.+++..+ ...+..+++|+.|++++ +.+..+|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~--n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD--REDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE--TTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC--CChhhccc
Confidence 9999887643 333778899999999999885444 13578899999999986 44555553
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=5.5e-12 Score=130.74 Aligned_cols=138 Identities=12% Similarity=-0.026 Sum_probs=118.4
Q ss_pred CCccccceEEecccCCcccchh--hcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCcc
Q 045303 943 NLPQALKYLGVESCSKLESLAE--RLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLT 1020 (1206)
Q Consensus 943 ~~~~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 1020 (1206)
.++..++.|++++|......+. +...++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..+..+++|+
T Consensus 29 ~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 108 (220)
T 2v70_A 29 HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLK 108 (220)
T ss_dssp CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCC
T ss_pred CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCC
Confidence 4556788899988865444332 33468999999999998887777899999999999999998887777889999999
Q ss_pred EEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCC
Q 045303 1021 ELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPL 1080 (1206)
Q Consensus 1021 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~ 1080 (1206)
+|+|++|.+.+..|..|..+++|++|+|++|.+.+..|.. ..+++|+.|++++|.+....
T Consensus 109 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 109 TLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp EEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred EEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 9999999999988999999999999999999998876655 78899999999999987543
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=3.6e-14 Score=160.56 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=7.7
Q ss_pred CCcCcccccccccC
Q 045303 1132 ENLTSLKYLYLIDC 1145 (1206)
Q Consensus 1132 ~~l~~L~~L~l~~n 1145 (1206)
..+++|+.|++++|
T Consensus 250 ~~l~~L~~L~L~~n 263 (362)
T 3goz_A 250 DSLKHLQTVYLDYD 263 (362)
T ss_dssp TTTTTCSEEEEEHH
T ss_pred hcCCCccEEEeccC
Confidence 34455555555555
No 126
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=1.2e-11 Score=142.07 Aligned_cols=296 Identities=14% Similarity=0.076 Sum_probs=173.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccccc---ceeEEEEEcCCCChHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QIKGWTCVSDDFDVPRV 163 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~ 163 (1206)
.+..|+||+++++++.+++..... ....+.+.|+|++|+||||||+.++.. ....+ ..++|+.+....+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHH
Confidence 447899999999999998865311 234568999999999999999999873 32221 24567776666677788
Q ss_pred HHHHHHhccCCCC-CCCCHHHHHHHHHHHhC--CCceEEEEeCCCccC----HhhHHhhhccCCC-CCCCcEEEEEccch
Q 045303 164 TKSILESIANVTV-DDNNLNSLQVKLKERLS--GKKFLLVLDDVWNEN----YIRWSELRCPFVA-GAAGSKIVVTTRNL 235 (1206)
Q Consensus 164 ~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~----~~~~~~l~~~l~~-~~~~~~iliTtr~~ 235 (1206)
+..++..++.... ...+..+....+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+..
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 8888877754322 12345555566666654 458999999996532 1122223222211 23456678888765
Q ss_pred HHHhhcC-------CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcC---CcchHH-HHHHhhh--
Q 045303 236 VVAERMR-------ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCG---GLPLAA-KTLGGLL-- 302 (1206)
Q Consensus 236 ~~~~~~~-------~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal-~~~~~~l-- 302 (1206)
.....+. ....+.+++++.++..+++...+.... .......++.+.+++.++ |.|..+ ..+....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4322111 114789999999999999987653111 011122456667777777 999844 3322221
Q ss_pred C---C--CCChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCCCC-C-cccCHHHHHHHH--HH--cC
Q 045303 303 R---G--RDDPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFPK-D-YEFQEEEIILLW--TA--EG 371 (1206)
Q Consensus 303 ~---~--~~~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp~-~-~~~~~~~l~~~w--~~--~g 371 (1206)
. + .-..+.+..+.... ....+...+..+++..+..+..++.+.+ + ..+....+.+.. ++ .|
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~--------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEI--------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHH--------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCccCHHHHHHHHHHH--------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 1 11334444444321 1245677788999998888877774211 1 122233222211 11 11
Q ss_pred CcccccCCCCHHHHHHHHHHHHHhCCccccc
Q 045303 372 FLDQEYSGRKMEDLGREFVRELHSRSLFQQS 402 (1206)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 402 (1206)
. . .........+++.|...|+++..
T Consensus 324 ~-~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 V-E-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp C-C-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-C-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 1 11124467789999999999764
No 127
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.30 E-value=2.3e-12 Score=137.67 Aligned_cols=151 Identities=17% Similarity=0.092 Sum_probs=69.9
Q ss_pred ccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCCCCCCCcCe
Q 045303 989 LHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPEDGFPTNLQS 1068 (1206)
Q Consensus 989 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~L~~ 1068 (1206)
+..+++|++|++++|.+. .++ .+..+++|++|+|++|.+.+..+ +..+++|++|++++|.+.+ ++.... ++|+.
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCE
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc-CcccE
Confidence 344455555555555332 222 34444555555555554443322 4455555555555554443 222222 45555
Q ss_pred EEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCcccc-CCCCCcCcccccccccCCC
Q 045303 1069 LEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLS-SIGENLTSLKYLYLIDCPK 1147 (1206)
Q Consensus 1069 L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~ 1147 (1206)
|++++|.+++ ++ .+..+++|+.|++++ +.++.++. +..+..|...+++++.+.. .....+++|+.|++++|+
T Consensus 111 L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~--N~i~~~~~-l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~- 183 (263)
T 1xeu_A 111 LFLDNNELRD-TD--SLIHLKNLEILSIRN--NKLKSIVM-LGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK- 183 (263)
T ss_dssp EECCSSCCSB-SG--GGTTCTTCCEEECTT--SCCCBCGG-GGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE-
T ss_pred EEccCCccCC-Ch--hhcCcccccEEECCC--CcCCCChH-HccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCc-
Confidence 5555555543 22 244555555555543 33444432 2222222222222222221 123578899999999995
Q ss_pred CCCCC
Q 045303 1148 LKYFP 1152 (1206)
Q Consensus 1148 l~~l~ 1152 (1206)
+...|
T Consensus 184 ~~~~~ 188 (263)
T 1xeu_A 184 CVNEP 188 (263)
T ss_dssp EECCC
T ss_pred ccCCc
Confidence 44444
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=1.6e-11 Score=128.17 Aligned_cols=137 Identities=13% Similarity=-0.024 Sum_probs=115.4
Q ss_pred CCccccceEEecccCCcccchhhc-CCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccE
Q 045303 943 NLPQALKYLGVESCSKLESLAERL-DNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTE 1021 (1206)
Q Consensus 943 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 1021 (1206)
.++++|+.|++++|......+..+ ..++|++|++++|.+....+..|.++++|++|+|++|.+.+..+..+..+++|++
T Consensus 37 ~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE 116 (229)
T ss_dssp CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence 456789999999987666555544 4589999999999986665677899999999999999888776777889999999
Q ss_pred EEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCC
Q 045303 1022 LTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPL 1080 (1206)
Q Consensus 1022 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~ 1080 (1206)
|+|++|.+. .+|..+..+++|++|+|++|.+....+.. ..+++|+.|++++|.+....
T Consensus 117 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 117 LFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp EECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred EeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 999999887 67888999999999999999988755543 77899999999999987543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.27 E-value=1.5e-12 Score=126.04 Aligned_cols=127 Identities=15% Similarity=0.040 Sum_probs=99.4
Q ss_pred CCcceeeeccccCc-CcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeee
Q 045303 969 TSLEEITILNLENL-KSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLD 1047 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 1047 (1206)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56777788888776 57787788889999999999876655 6677888999999999988887888788889999999
Q ss_pred eecCCCCccC--CCCCCCCCcCeEEEeCcCCCCCCC--ccCCCCCCCcceEEee
Q 045303 1048 IRGCPSVVSF--PEDGFPTNLQSLEVRGLKISKPLP--EWGFNRFTSLRRFTIC 1097 (1206)
Q Consensus 1048 L~~n~~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~p--~~~~~~l~~L~~L~ls 1097 (1206)
+++|.+.+.. .....+++|+.|++++|.+++..+ ...+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999877632 333678889999999998875443 1357778888888764
No 130
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.2e-13 Score=164.10 Aligned_cols=38 Identities=21% Similarity=0.290 Sum_probs=34.1
Q ss_pred cCccccceeeccccccccccccccccccccEEecCCCc
Q 045303 521 GNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCW 558 (1206)
Q Consensus 521 ~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~ 558 (1206)
..+++|+.|+|++|.++.+|..++.+++|+.|++++|.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~ 383 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKW 383 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccch
Confidence 56889999999999999999999999999999997774
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=2e-11 Score=123.51 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=55.1
Q ss_pred ccceeeccccCCcccccC-CCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEE
Q 045303 994 HLQKIWIGYCPNLESFPE-EGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEV 1071 (1206)
Q Consensus 994 ~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~L 1071 (1206)
+|++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+.. ..+++|++|+|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 555555555544433332 2445555555555555555555555555555555555555555444432 44555555555
Q ss_pred eCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1072 RGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1072 s~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
++|.+++..|. .|..+++|++|++++
T Consensus 110 ~~N~l~~~~~~-~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 110 YDNQISCVMPG-SFEHLNSLTSLNLAS 135 (192)
T ss_dssp CSSCCCEECTT-SSTTCTTCCEEECTT
T ss_pred CCCcCCeeCHH-HhhcCCCCCEEEeCC
Confidence 55555544444 455555555555544
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.24 E-value=2.7e-11 Score=122.55 Aligned_cols=131 Identities=13% Similarity=0.072 Sum_probs=106.6
Q ss_pred ceEEecccCCcccchhhcCCCCcceeeeccccCcCcccc-cccCCCccceeeccccCCcccccCCCCCCCCccEEEeccc
Q 045303 949 KYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPA-GLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDC 1027 (1206)
Q Consensus 949 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1027 (1206)
+.++++++. ++.+|..+. .++++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~-l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRG-LKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSC-CSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCC-cCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 345555443 244444332 4788999999887665554 4889999999999999988888889999999999999999
Q ss_pred cCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCC
Q 045303 1028 ENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLP 1081 (1206)
Q Consensus 1028 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p 1081 (1206)
.+.+..+..|.++++|++|+|++|.+.+..|.. ..+++|+.|++++|.+.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 999988888999999999999999998877765 778999999999999986544
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=1.2e-11 Score=122.49 Aligned_cols=141 Identities=14% Similarity=0.152 Sum_probs=102.6
Q ss_pred CCCccceeeccccCCc-ccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCe
Q 045303 991 NLHHLQKIWIGYCPNL-ESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQS 1068 (1206)
Q Consensus 991 ~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~ 1068 (1206)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|.. ..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999876 57777788889999999999987765 67888999999999999887765554 45889999
Q ss_pred EEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCCCCCcCcccccccccCCCC
Q 045303 1069 LEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSIGENLTSLKYLYLIDCPKL 1148 (1206)
Q Consensus 1069 L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~l 1148 (1206)
|++++|.+++..+...+..+++|++|++++ +.+..+|.. ....+..+++|+.|++++| .+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~--N~l~~~~~~-----------------~~~~~~~l~~L~~L~l~~n-~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFN--CEVTNLNDY-----------------RESVFKLLPQLTYLDGYDR-ED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCS--SGGGTSTTH-----------------HHHHHTTCSSCCEETTEET-TS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeC--CcCcchHHH-----------------HHHHHHhCccCcEecCCCC-Ch
Confidence 999999887532223677888888888876 344433320 0012246778888888888 45
Q ss_pred CCCCC
Q 045303 1149 KYFPE 1153 (1206)
Q Consensus 1149 ~~l~~ 1153 (1206)
+.+|.
T Consensus 160 ~~~~~ 164 (168)
T 2ell_A 160 QEAPD 164 (168)
T ss_dssp CBCCS
T ss_pred hhccc
Confidence 55553
No 134
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.20 E-value=2.2e-10 Score=122.15 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=119.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
..+++||+.+++.+..++.... ..+.+.|+|++|+|||++|+.+++.......+.. ....... ....+
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~ 89 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCD-NCREI 89 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSH-HHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccH-HHHHH
Confidence 3569999999999999997542 2358899999999999999999863221111000 0000000 00111
Q ss_pred HHhcc-----CCCCCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHH
Q 045303 168 LESIA-----NVTVDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVV 237 (1206)
Q Consensus 168 ~~~l~-----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~ 237 (1206)
..... .........+. ...+.+.+ .+++.+||+||++......+..+...+.....+..+|+||+....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred hccCCcceEEecCcccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 10000 00000011111 11222222 346789999999876656666666555554567888888876431
Q ss_pred -Hhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhh
Q 045303 238 -AER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL 302 (1206)
Q Consensus 238 -~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 302 (1206)
... ......+++++++.+|..+++...+...+. ....+..+.|++.++|.|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 122357899999999999999887643221 1224667889999999999888776543
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=6.5e-13 Score=157.84 Aligned_cols=100 Identities=17% Similarity=0.136 Sum_probs=65.3
Q ss_pred ccCCceeEEEecCCCCcccCCccccCccccceeeccccc-------------c-ccccccccccccccEEe-cCCCcccc
Q 045303 497 NHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTR-------------I-QILPESINSLYNLHTIL-LEDCWKLK 561 (1206)
Q Consensus 497 ~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~-------------i-~~lp~~~~~L~~L~~L~-L~~n~~~~ 561 (1206)
..++.|+.|+|++| .+..+|..|+++++|+.|++++|. + ..+|..++.+++|+.|+ ++.| ...
T Consensus 346 ~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp STTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred ccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 45778888999988 888889889999999999987764 2 24456677788888887 5544 333
Q ss_pred cccc------cccC--CCccceeecCCCCccccCCcccCCcCccccC
Q 045303 562 KLCK------DMGN--LTKLRHLRNSNADELEEMPKGFGKLTCLLTL 600 (1206)
Q Consensus 562 ~lp~------~~~~--L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 600 (1206)
.++. .+.. ...|+.|++++|. +..+|. ++++++|+.|
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L 468 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHL 468 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEE
T ss_pred hhhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEe
Confidence 3221 1111 1247777777776 555554 5555555555
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=1.4e-10 Score=116.99 Aligned_cols=104 Identities=20% Similarity=0.204 Sum_probs=53.6
Q ss_pred CccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEE
Q 045303 993 HHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEV 1071 (1206)
Q Consensus 993 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~L 1071 (1206)
++|++|+|++|.+. .+|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+....+.. ..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 34555555555332 33444455555555555555555544445555555555555555554443332 44555555555
Q ss_pred eCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1072 RGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1072 s~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
++|.++. +|...|..+++|+.|++++
T Consensus 110 ~~N~l~~-~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 110 HGNDISV-VPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CSSCCCB-CCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCe-eChhhhhcCccccEEEeCC
Confidence 5555552 3333455566666666654
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=1.9e-10 Score=116.18 Aligned_cols=126 Identities=17% Similarity=0.076 Sum_probs=92.4
Q ss_pred ceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEecccc
Q 045303 949 KYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCE 1028 (1206)
Q Consensus 949 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 1028 (1206)
+.++++++. ++.+|..+ ..+|++|++++|.+. .+|..+.++++|++|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~-l~~ip~~~-~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKG-LKVLPKGI-PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSC-CSSCCSCC-CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCC-CCcCCCCC-CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 345555543 44555433 267888888888764 566778888888888888887777666777888888888888888
Q ss_pred CccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCC
Q 045303 1029 NLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKIS 1077 (1206)
Q Consensus 1029 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~ 1077 (1206)
+.+..|..|..+++|++|+|++|.+....+.. ..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88777777888888888888888877654433 56788888888888765
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.12 E-value=1.5e-10 Score=128.78 Aligned_cols=125 Identities=12% Similarity=-0.066 Sum_probs=85.6
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccC-eee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLL-DLD 1047 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~-~L~ 1047 (1206)
.++..+.+.++-...........+++|+.|+|++|.+....+..|.+|++|++|+|.+| +...-+..|.++++|+ .++
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 45555555543222222211223788888999888766666667888888999988876 5555567788888888 888
Q ss_pred eecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEe
Q 045303 1048 IRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTI 1096 (1206)
Q Consensus 1048 L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~l 1096 (1206)
+.+ .+....+.. ..+++|+.|++++|.++ .++...|.++++|+.++.
T Consensus 281 l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred Ecc-cceEEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 888 444433333 67788888888888887 455558888888888763
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=2.5e-10 Score=113.91 Aligned_cols=105 Identities=16% Similarity=0.050 Sum_probs=52.4
Q ss_pred CccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEE
Q 045303 993 HHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEV 1071 (1206)
Q Consensus 993 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~L 1071 (1206)
++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+.. ..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 44555555555444333334444555555555555554444444455555555555555554433332 44555555555
Q ss_pred eCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1072 RGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1072 s~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
++|.+++ +|...+..+++|++|++++
T Consensus 108 ~~N~l~~-~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 108 DTNQLKS-VPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp CSSCCSC-CCTTTTTTCTTCCEEECCS
T ss_pred cCCcceE-eCHHHhcCCcccCEEEecC
Confidence 5555542 3333445555555555554
No 140
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=2.5e-11 Score=117.29 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=92.7
Q ss_pred CCCccceeeccccCCc-ccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCe
Q 045303 991 NLHHLQKIWIGYCPNL-ESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQS 1068 (1206)
Q Consensus 991 ~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~ 1068 (1206)
..++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|.. ..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999877 68888888999999999999988776 67899999999999999988766554 45899999
Q ss_pred EEEeCcCCCCCCCccCCCCCCCcceEEeecCCCCceecC
Q 045303 1069 LEVRGLKISKPLPEWGFNRFTSLRRFTICGGCPDLVSLP 1107 (1206)
Q Consensus 1069 L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~~l~~lp 1107 (1206)
|++++|.+++......+..+++|++|++++ +.++.+|
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~--N~l~~~~ 129 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFN--CEVTNLN 129 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTT--CGGGGST
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcC--CcccchH
Confidence 999999998532113688999999999976 4555554
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=5.2e-10 Score=111.60 Aligned_cols=132 Identities=15% Similarity=-0.002 Sum_probs=92.9
Q ss_pred cceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccc
Q 045303 948 LKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDC 1027 (1206)
Q Consensus 948 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 1027 (1206)
.+.++++++. ++.+|... .++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~-l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKG-LTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSC-CSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCC-CccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3455555543 34444322 267888888888776655566777888888888888766655556677888888888888
Q ss_pred cCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCC
Q 045303 1028 ENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLP 1081 (1206)
Q Consensus 1028 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p 1081 (1206)
.+.+..+..|..+++|++|++++|.+.+..+.. ..+++|+.|++++|.+.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 877766666778888888888888777554443 567888888888888765443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.09 E-value=1.6e-10 Score=128.53 Aligned_cols=234 Identities=11% Similarity=0.075 Sum_probs=140.7
Q ss_pred cccceEEEeccCCccccccCCCCccccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccC--------CC
Q 045303 922 ATLEHLEVSSCSNLAFLTRNGNLPQALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHN--------LH 993 (1206)
Q Consensus 922 ~~l~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------l~ 993 (1206)
.+++.|.+++.-.-..+.......++|+.|++++|............+.+..+.+..+ ..-+..|.+ ++
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECT
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccccccccC
Confidence 3466777765322111111111145788888877764411000001111222333332 122344666 88
Q ss_pred ccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCC---CccCCCC----------
Q 045303 994 HLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPS---VVSFPED---------- 1060 (1206)
Q Consensus 994 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~---~~~~~~~---------- 1060 (1206)
+|+.|+|.+ .+...-+..|.+|++|+.|++++|.+....+..|.++.++..+.+..+.. ...+...
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 888888888 45555556788888888888888877766677777776666665443110 0000000
Q ss_pred ------------------------------------------CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1061 ------------------------------------------GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1061 ------------------------------------------~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
..+++|+.|+|++|.++ .+|...|.++++|+.|++.+
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~ 259 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPH 259 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCc
Confidence 02689999999999887 67777999999999999975
Q ss_pred CCCCceecCC-CCCCCccee-eccCCC-C-ccccCCCCCcCcccccccccCCCCCCCCCCCC--ccccceec
Q 045303 1099 GCPDLVSLPP-FPASLTGLE-ISDMPD-L-ECLSSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLH 1164 (1206)
Q Consensus 1099 ~~~~l~~lp~-~~~~L~~L~-~~~~~~-~-~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~ 1164 (1206)
+++.++. .|..+..|. ..+++. + .+....+.++++|+.|++++| .++.++...+ +++|+.++
T Consensus 260 ---ni~~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 260 ---NLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ---TCCEECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred ---ccceehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 2778877 455555444 333332 2 233456688999999999877 6888887555 56677664
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.07 E-value=1.5e-09 Score=113.52 Aligned_cols=185 Identities=14% Similarity=0.104 Sum_probs=114.0
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEc--CCCChHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVS--DDFDVPRVTK 165 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~--~~~~~~~~~~ 165 (1206)
..+++||++.++++.+++.... .+.+.|+|++|+|||++|+.+++. .........++.+. .......+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARD--LFGENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHH--HHGGGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHH--HhccccccceEEeccccccChHHHHH
Confidence 3569999999999999996532 234899999999999999999873 21111112233332 2222222111
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHH-Hhh-cCC
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVV-AER-MRA 243 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~-~~~-~~~ 243 (1206)
.+..+.... ....+++.+||+||++......+..+...+.....++++|+||+.... ... ...
T Consensus 88 -~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 88 -KIKEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp -HHHHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred -HHHHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 111110000 001256889999999876655555555444444567788888876431 111 122
Q ss_pred CCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 045303 244 DPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLG 299 (1206)
Q Consensus 244 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 299 (1206)
...+.+.+++.++..+++...+...+. . ...+..+.+++.++|.|..+..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV-K---ITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 347899999999999999887642221 1 224667889999999998655443
No 144
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.06 E-value=6.4e-11 Score=118.05 Aligned_cols=126 Identities=10% Similarity=-0.017 Sum_probs=85.7
Q ss_pred CCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeee
Q 045303 968 NTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLD 1047 (1206)
Q Consensus 968 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 1047 (1206)
..+|+.|++++|.+. .++......++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 466777777777655 3444333334888888888866554 5677778888888888877765445557788888888
Q ss_pred eecCCCCccCCC---CCCCCCcCeEEEeCcCCCCCCCcc---CCCCCCCcceEEeec
Q 045303 1048 IRGCPSVVSFPE---DGFPTNLQSLEVRGLKISKPLPEW---GFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1048 L~~n~~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~p~~---~~~~l~~L~~L~ls~ 1098 (1206)
+++|.+.. +|. ...+++|+.|++++|.++ .+|.. .+..+++|+.|++++
T Consensus 95 L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 95 LTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred CCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 88887744 333 356778888888888876 34442 366777777777765
No 145
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=1.4e-10 Score=142.59 Aligned_cols=112 Identities=23% Similarity=0.265 Sum_probs=97.6
Q ss_pred HHHHHhccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCC
Q 045303 491 VLKMLLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNL 570 (1206)
Q Consensus 491 ~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L 570 (1206)
.++..|..++.|++|+|++| .+..+|..+.++++|++|+|++|.|+.+|..|.+|++|++|+|++| .+..+|..|++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCC
Confidence 56777999999999999999 7889998888999999999999999999999999999999999999 566999999999
Q ss_pred CccceeecCCCCccccCCcccCCcCccccCCceEe
Q 045303 571 TKLRHLRNSNADELEEMPKGFGKLTCLLTLGRFVV 605 (1206)
Q Consensus 571 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~~~~~ 605 (1206)
++|++|+|++|. +..+|..|++|++|++|++..+
T Consensus 293 ~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 293 FQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp TTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCCEEECCCCC-CCccChhhhcCCCccEEeCCCC
Confidence 999999999998 7899999999999999965443
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.04 E-value=1.1e-10 Score=116.46 Aligned_cols=104 Identities=19% Similarity=0.219 Sum_probs=86.7
Q ss_pred CCceeEEEecCCCCcccCCccccCccccceeeccccccccccccc-cccccccEEecCCCcccccccc--cccCCCccce
Q 045303 499 LPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLEDCWKLKKLCK--DMGNLTKLRH 575 (1206)
Q Consensus 499 ~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~-~~L~~L~~L~L~~n~~~~~lp~--~~~~L~~L~~ 575 (1206)
.++|++|++++| .+..+ ..|..+++|++|++++|.|+.+|..+ ..+++|++|++++| .+..+|. .+..+++|++
T Consensus 41 ~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~ 117 (176)
T 1a9n_A 41 LDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTY 117 (176)
T ss_dssp TTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCE
T ss_pred CCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCE
Confidence 448999999999 77777 57889999999999999999888654 88999999999999 6677876 7889999999
Q ss_pred eecCCCCccccCCcc----cCCcCccccCCceEeC
Q 045303 576 LRNSNADELEEMPKG----FGKLTCLLTLGRFVVG 606 (1206)
Q Consensus 576 L~l~~n~~~~~~p~~----~~~l~~L~~L~~~~~~ 606 (1206)
|++++|. +..+|.. +..+++|+.|+...+.
T Consensus 118 L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 118 LCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999998 6677775 7888888888766543
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=4.4e-11 Score=147.03 Aligned_cols=134 Identities=21% Similarity=0.167 Sum_probs=69.0
Q ss_pred cccceEEecccCCcccchhhcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEec
Q 045303 946 QALKYLGVESCSKLESLAERLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIW 1025 (1206)
Q Consensus 946 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 1025 (1206)
..|+.|++++|.........+...+|++|++++|.+. .+|..+.++++|++|+|++|.+. .+|..+..+++|++|+|+
T Consensus 224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence 4555666655554322223334455666666655544 55555555666666666665544 445555555566666665
Q ss_pred cccCccccccccCCCCccCeeeeecCCCCccCCCC-CCC-CCcCeEEEeCcCCCCCCCc
Q 045303 1026 DCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFP-TNLQSLEVRGLKISKPLPE 1082 (1206)
Q Consensus 1026 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~-~~L~~L~Ls~n~l~~~~p~ 1082 (1206)
+|.+. .+|..|+.+++|++|+|++|.+.+.+|.. ..+ ..+..|+|++|.+++.+|.
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 55543 44555556666666666666555444432 000 1112345555555554443
No 148
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.95 E-value=3.4e-09 Score=117.70 Aligned_cols=183 Identities=15% Similarity=0.070 Sum_probs=108.5
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
..+++|++..++++..++..... .....+.+.|+|++|+|||++|+.+++. .... ..++........
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~------- 77 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKP------- 77 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSH-------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCCh-------
Confidence 46799999999998888753210 0113357889999999999999999873 2211 223322222111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCC------------------CCCcEEE
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAG------------------AAGSKIV 229 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~------------------~~~~~il 229 (1206)
.++...+... ..++.+|++|+++.........+...+... .++.++|
T Consensus 78 --------------~~l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 78 --------------GDLAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp --------------HHHHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred --------------HHHHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 1111111111 135678999999876543333332221110 0245666
Q ss_pred EEccchH-HHhhc-C-CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhh
Q 045303 230 VTTRNLV-VAERM-R-ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL 302 (1206)
Q Consensus 230 iTtr~~~-~~~~~-~-~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 302 (1206)
.||.... +...+ . ....+.+.+++.+|..+++...+...+. .-..+..+.+++.++|.|-.+..+...+
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV----RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC----CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 6666432 11111 1 1247899999999999999887643221 1224677889999999998877665443
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=3e-09 Score=104.76 Aligned_cols=85 Identities=13% Similarity=-0.040 Sum_probs=38.5
Q ss_pred CccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEE
Q 045303 993 HHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEV 1071 (1206)
Q Consensus 993 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~L 1071 (1206)
++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+.+..+.. ..+++|+.|+|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 44444555544444444444444444445555444444443334444444444444444444333321 33444444444
Q ss_pred eCcCCC
Q 045303 1072 RGLKIS 1077 (1206)
Q Consensus 1072 s~n~l~ 1077 (1206)
++|.++
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 444443
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=4.2e-09 Score=104.04 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=35.3
Q ss_pred CCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEE
Q 045303 1017 TKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFT 1095 (1206)
Q Consensus 1017 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ 1095 (1206)
++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+.. ..+++|+.|+|++|.+++ +|...|..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCCCEEE
Confidence 34444444444444444444444444444444444444322222 334444444444444442 2222344445555555
Q ss_pred eec
Q 045303 1096 ICG 1098 (1206)
Q Consensus 1096 ls~ 1098 (1206)
|++
T Consensus 112 L~~ 114 (174)
T 2r9u_A 112 LYN 114 (174)
T ss_dssp CCS
T ss_pred eCC
Confidence 543
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=5e-09 Score=103.19 Aligned_cols=102 Identities=20% Similarity=0.160 Sum_probs=86.6
Q ss_pred ccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEe
Q 045303 994 HLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVR 1072 (1206)
Q Consensus 994 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls 1072 (1206)
+.+.+++++|.+. .+|..+. ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+.. ..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578999998654 4666553 79999999999999988999999999999999999998766654 789999999999
Q ss_pred CcCCCCCCCccCCCCCCCcceEEeecC
Q 045303 1073 GLKISKPLPEWGFNRFTSLRRFTICGG 1099 (1206)
Q Consensus 1073 ~n~l~~~~p~~~~~~l~~L~~L~ls~~ 1099 (1206)
+|.+++ +|...|..+++|+.|+|++|
T Consensus 87 ~N~l~~-~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 87 DNQLKS-IPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSS
T ss_pred CCccCE-eCHHHhcCCCCCCEEEeCCC
Confidence 999986 44447999999999999873
No 152
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.88 E-value=1.3e-11 Score=125.94 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=43.8
Q ss_pred HhccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccccccccccEEecCCCcccccccccccCCCccc
Q 045303 495 LLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLEDCWKLKKLCKDMGNLTKLR 574 (1206)
Q Consensus 495 ~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~~L~ 574 (1206)
.+..+++|++|++++| .+..+| .+.++++|++|++++|.|+.+|..+..+++|++|++++| .+..+| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 3445555555555555 444454 455555555555555555555554455555555555555 334444 355555555
Q ss_pred eeecCCCC
Q 045303 575 HLRNSNAD 582 (1206)
Q Consensus 575 ~L~l~~n~ 582 (1206)
+|++++|.
T Consensus 119 ~L~l~~N~ 126 (198)
T 1ds9_A 119 VLYMSNNK 126 (198)
T ss_dssp EEEESEEE
T ss_pred EEECCCCc
Confidence 55555554
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.88 E-value=1.3e-08 Score=113.12 Aligned_cols=186 Identities=21% Similarity=0.218 Sum_probs=113.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccc-eeEEEEEcCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 166 (1206)
..+++||+..++.+..++.... .+.+.|+|++|+|||++|+.+++... ...+. ..+++..+..... ...++
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~ 91 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRN 91 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHT
T ss_pred HHHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHH
Confidence 3579999999999999986532 22389999999999999999987321 11111 1223322221121 11111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHh-CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-HHhh-cCC
Q 045303 167 ILESIANVTVDDNNLNSLQVKLKERL-SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAER-MRA 243 (1206)
Q Consensus 167 i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~-~~~ 243 (1206)
+++.+... ...+ .+++.++|+||++......+..+...+.....++++|+||+... +... ...
T Consensus 92 ~~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 92 QIKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 11111100 0011 34588999999987665555555544444446778888886642 1111 122
Q ss_pred CCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHHH
Q 045303 244 DPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTLG 299 (1206)
Q Consensus 244 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 299 (1206)
...+++.+++.++..+++...+...+. . ...+.++.+++.++|.|. |+..+.
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDV-K---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-C---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 347899999999999999886532211 1 124667889999999995 444443
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.87 E-value=7e-09 Score=102.45 Aligned_cols=104 Identities=15% Similarity=0.080 Sum_probs=89.8
Q ss_pred ceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecC
Q 045303 972 EEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGC 1051 (1206)
Q Consensus 972 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n 1051 (1206)
+.++++++.+ +.+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|.+.+..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 5788888775 56777664 89999999999988888888999999999999999998876777899999999999999
Q ss_pred CCCccCCC-CCCCCCcCeEEEeCcCCCC
Q 045303 1052 PSVVSFPE-DGFPTNLQSLEVRGLKISK 1078 (1206)
Q Consensus 1052 ~~~~~~~~-~~~~~~L~~L~Ls~n~l~~ 1078 (1206)
.+.+..+. ...+++|+.|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99876655 3778999999999999874
No 155
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=98.79 E-value=5.2e-09 Score=93.25 Aligned_cols=48 Identities=27% Similarity=0.492 Sum_probs=43.7
Q ss_pred CHHHHHHHHHHHhhc--ccCchHHHHHHHHHHHHHhhhhhHHhhhhhHHH
Q 045303 1 MLEMIQAVLAESEDR--QTRETSVKTWLDNLQNLAYDVQDVLDEFETEAL 48 (1206)
Q Consensus 1 ~l~~~~~~l~~a~~~--~~~~~~~~~w~~~~~~~~~~~ed~ld~~~~~~~ 48 (1206)
.|++|+|||.+|+.+ +.+++.++.|+++||+++||+||++|+|.++..
T Consensus 34 eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~~ 83 (115)
T 3qfl_A 34 ELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQVD 83 (115)
T ss_dssp HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378999999999987 668999999999999999999999999988753
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.74 E-value=2.7e-10 Score=116.02 Aligned_cols=126 Identities=20% Similarity=0.235 Sum_probs=92.3
Q ss_pred cccCCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEecCCCCcccCCccccCccccceeeccccccccccccc
Q 045303 464 SVSDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIFSLPNEIGNLKHLRCLNLSRTRIQILPESI 543 (1206)
Q Consensus 464 ~~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~ 543 (1206)
.+..+++++.|.+.+.. . .. ++ .+..+++|++|++++| .+..+|..+..+++|++|++++|.++.+| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~-l--~~-----l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-I--EK-----IS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEE-E--SC-----CC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HHhcCCCCCEEECCCCC-C--cc-----cc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 45677788888765532 1 11 11 4667788999999998 77888887888889999999999998887 58
Q ss_pred cccccccEEecCCCcccccccc--cccCCCccceeecCCCCccccCCcc----------cCCcCccccCC
Q 045303 544 NSLYNLHTILLEDCWKLKKLCK--DMGNLTKLRHLRNSNADELEEMPKG----------FGKLTCLLTLG 601 (1206)
Q Consensus 544 ~~L~~L~~L~L~~n~~~~~lp~--~~~~L~~L~~L~l~~n~~~~~~p~~----------~~~l~~L~~L~ 601 (1206)
..+++|++|++++| .+..+|. .+..+++|++|++++|.+....|.. +..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 88899999999988 5665554 6888999999999998844443332 45555555554
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.71 E-value=5.9e-08 Score=103.85 Aligned_cols=173 Identities=9% Similarity=-0.012 Sum_probs=105.0
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccccc------ccceeEEEEEcCCCChHHH
Q 045303 90 KVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR------HFQIKGWTCVSDDFDVPRV 163 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~------~f~~~~wv~~~~~~~~~~~ 163 (1206)
.+.|||+|++++...|...-. .+..+.+.|+|++|+|||++|+.+++...... .| ..+.+.+....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 388999999999988865432 34667899999999999999999997432111 12 3456666666788899
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHh---CCCceEEEEeCCCccCHhhHHhhhccC--CC-CCCCcEEEEEccchH-
Q 045303 164 TKSILESIANVTVDDNNLNSLQVKLKERL---SGKKFLLVLDDVWNENYIRWSELRCPF--VA-GAAGSKIVVTTRNLV- 236 (1206)
Q Consensus 164 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~~~~~l~~~l--~~-~~~~~~iliTtr~~~- 236 (1206)
+..+++++.+..............+...+ .++++++++|+++... .-+.+...+ .. ......||.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999998654322222223333333332 4678999999997653 111121111 11 112223344443321
Q ss_pred ----HHhhc--C-CCCceeCCCCChhhHHHHHHHhhhC
Q 045303 237 ----VAERM--R-ADPVYQLKKLSDDDCLCVLTQISLG 267 (1206)
Q Consensus 237 ----~~~~~--~-~~~~~~l~~l~~~e~~~l~~~~~~~ 267 (1206)
+.... + ....+.+.+++.+|-.+++..++..
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 11111 1 1246899999999999999887743
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=9.8e-08 Score=106.14 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=112.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
..+++|+++.++.+..++... +.+.+.|+|++|+|||++|+.+++. .........++.+... +....
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~--l~~~~~~~~~~~~~~~-~~~~~---- 90 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARE--LFGENWRHNFLELNAS-DERGI---- 90 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHH--HHGGGHHHHEEEEETT-CHHHH----
T ss_pred HHHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHH--hcCCcccCceEEeecc-ccCch----
Confidence 456999999999999998653 2334899999999999999999873 2111111112222211 11000
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHH--h-CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHH-Hhhc-C
Q 045303 168 LESIANVTVDDNNLNSLQVKLKER--L-SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVV-AERM-R 242 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~-~~~~-~ 242 (1206)
. ............ + .+++.++|+|+++......+..+...+.....++++|+||..... ...+ .
T Consensus 91 -~----------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 91 -N----------VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp -H----------TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred -H----------HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 0 000001111111 1 256789999999877655555555544444567788888876421 1111 1
Q ss_pred CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 045303 243 ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLG 299 (1206)
Q Consensus 243 ~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 299 (1206)
....+.+.+++.++..+++...+...+. .-..+..+.|++.++|.|..+..+.
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTC----EECHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 2237899999999999999887643221 1234677889999999998655443
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.65 E-value=2.3e-07 Score=105.22 Aligned_cols=196 Identities=15% Similarity=0.106 Sum_probs=113.7
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
..+++||+..++.+..++.... ..+.+.|+|++|+|||++|+.+++.......+. ............+
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREI 82 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHH
Confidence 3569999999999999996542 235789999999999999999986322111100 0000000111111
Q ss_pred HHhc-------cCCC-CCCCCHHHHHHHHHHH-hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-H
Q 045303 168 LESI-------ANVT-VDDNNLNSLQVKLKER-LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-V 237 (1206)
Q Consensus 168 ~~~l-------~~~~-~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~ 237 (1206)
.... .... ........+...+... ..+++.++|+||++......+..+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1100 0000 0111222222221111 134678999999987665555666555544445677777776432 1
Q ss_pred Hhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 045303 238 AER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLG 299 (1206)
Q Consensus 238 ~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 299 (1206)
... ......+++.+++.++..+++...+...+. ....+.++.|++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~----~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI----AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 111 122357899999999999999876532211 1124567889999999998776554
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.65 E-value=4.5e-08 Score=109.80 Aligned_cols=103 Identities=17% Similarity=0.045 Sum_probs=68.9
Q ss_pred eeeccccCcCcccccccCCCccceeeccc-cCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCC
Q 045303 974 ITILNLENLKSLPAGLHNLHHLQKIWIGY-CPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCP 1052 (1206)
Q Consensus 974 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 1052 (1206)
++.++++.+..+|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|++|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 34444433445666 77777777777775 65555555667777777777777777777777777777777777777777
Q ss_pred CCccCCCCCCCCCcCeEEEeCcCCC
Q 045303 1053 SVVSFPEDGFPTNLQSLEVRGLKIS 1077 (1206)
Q Consensus 1053 ~~~~~~~~~~~~~L~~L~Ls~n~l~ 1077 (1206)
+.+..+.......|+.|+|.+|.+.
T Consensus 92 l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred cceeCHHHcccCCceEEEeeCCCcc
Confidence 7654444322223777777777765
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.64 E-value=7.6e-07 Score=100.71 Aligned_cols=211 Identities=11% Similarity=0.076 Sum_probs=124.6
Q ss_pred ccceEEecccCCcccchh--hcCCCCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEe
Q 045303 947 ALKYLGVESCSKLESLAE--RLDNTSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTI 1024 (1206)
Q Consensus 947 ~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 1024 (1206)
+|+.+.+.+ .++.+.. +..+.+|+.+++.+|.....-...|. +++|+.+.|..+ +...-...|.+|++|+.+++
T Consensus 158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 566666654 3444432 22346777777777655444344444 577777777754 44444556777778888888
Q ss_pred ccccCccccccccCCCCccCeeeeecCCCCccCCCC-CCCCCcCeEEEeCcCCC----CCCCccCCCCCCCcceEEeecC
Q 045303 1025 WDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED-GFPTNLQSLEVRGLKIS----KPLPEWGFNRFTSLRRFTICGG 1099 (1206)
Q Consensus 1025 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~----~~~p~~~~~~l~~L~~L~ls~~ 1099 (1206)
.++ +...-...|.+ .+|+.+.+.++ +...-... ..+++|+.+++.+|.+. ..++...|.+|++|+.+++.
T Consensus 234 ~~~-l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-- 308 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-- 308 (401)
T ss_dssp CTT-CCEECTTTTTT-CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC--
T ss_pred CCC-ccCcccccccc-CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC--
Confidence 653 33334455666 67888888543 33322222 56778888888877654 23566678888888888884
Q ss_pred CCCceecCC-CCCCCcceeeccCCCC--ccccCCCCCcCcccccccccCCCCCCCCCCC---CccccceecccCCh
Q 045303 1100 CPDLVSLPP-FPASLTGLEISDMPDL--ECLSSIGENLTSLKYLYLIDCPKLKYFPEQG---LPKSLLQLHIKGCP 1169 (1206)
Q Consensus 1100 ~~~l~~lp~-~~~~L~~L~~~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~---~~~~L~~L~l~~c~ 1169 (1206)
++++.++. .+..+..|....++.+ .+-...+.++ +|+.+++.+| .+..++... ++.+++.|++-.+.
T Consensus 309 -~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 309 -ESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -TTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -CceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHH
Confidence 34666665 3433333333333322 2223345667 8888888877 455555432 34567777776544
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.61 E-value=1.3e-06 Score=98.82 Aligned_cols=191 Identities=8% Similarity=0.048 Sum_probs=120.2
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
.+|+.+.+.+ .....-+..|.+|++|+.+++++|.+.......|. +.+|+.+.|.++ +...-...|.++++|+.+++
T Consensus 157 ~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 157 STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 4677777765 33333356688888888888888755544444444 578888888743 55555667888888888888
Q ss_pred ecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeecCCC---CceecCC-CCCCCcceeeccCCC
Q 045303 1049 RGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICGGCP---DLVSLPP-FPASLTGLEISDMPD 1123 (1206)
Q Consensus 1049 ~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~~~~---~l~~lp~-~~~~L~~L~~~~~~~ 1123 (1206)
.++ +. .++.. ..-.+|+.+.+.++ ++ .++...|.++++|+.+++.++.. ....++. .+..+..|....+++
T Consensus 234 ~~~-l~-~I~~~aF~~~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 234 PEN-VS-TIGQEAFRESGITTVKLPNG-VT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CTT-CC-EECTTTTTTCCCSEEEEETT-CC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT
T ss_pred CCC-cc-CccccccccCCccEEEeCCC-cc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC
Confidence 875 33 23332 22267888888543 43 46666788888888888876321 1224554 444444444444442
Q ss_pred -Cc-cccCCCCCcCcccccccccCCCCCCCCCCCC--ccccceecccCCh
Q 045303 1124 -LE-CLSSIGENLTSLKYLYLIDCPKLKYFPEQGL--PKSLLQLHIKGCP 1169 (1206)
Q Consensus 1124 -~~-~~~~~~~~l~~L~~L~l~~n~~l~~l~~~~~--~~~L~~L~l~~c~ 1169 (1206)
+. +-...+.++++|+.+++.++ ++.++...+ + +|+.+++.++.
T Consensus 310 ~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 310 SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 22 22334567788888888654 677766544 4 78888887763
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.58 E-value=3.2e-07 Score=101.52 Aligned_cols=182 Identities=13% Similarity=0.091 Sum_probs=111.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccc-eeEEEEEcCCCChHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 166 (1206)
..+++|++..++.+.+++... +.+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+....
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~------- 81 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG------- 81 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC-------
T ss_pred HHHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC-------
Confidence 356999999999998887542 223489999999999999999987311 11111 122222222111
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHH--h-CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-HHhh-c
Q 045303 167 ILESIANVTVDDNNLNSLQVKLKER--L-SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAER-M 241 (1206)
Q Consensus 167 i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~-~ 241 (1206)
..........+... + .+++.++|+|+++.........+...+.....++++|+||.... +... .
T Consensus 82 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 82 -----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 01111111111111 1 25678999999987765555666655555456778888876543 1111 1
Q ss_pred CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 242 RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 242 ~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
.....+.+.+++.++..+++...+...+. .-..+.++.+++.++|.+..+...
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~----~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCC----CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22347899999999999999887643221 122466788999999998765433
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.57 E-value=2.5e-06 Score=97.15 Aligned_cols=104 Identities=15% Similarity=0.099 Sum_probs=56.2
Q ss_pred ccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC--CCCC
Q 045303 987 AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED--GFPT 1064 (1206)
Q Consensus 987 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~ 1064 (1206)
..|.++..++.+....+. .....+..+.+|+.+.+.++ +...-..+|.++++|+.+++.++ + ..++.. ..+.
T Consensus 270 ~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~c~ 343 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V-EEIGKRSFRGCT 343 (394)
T ss_dssp CTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C-CEECTTTTTTCT
T ss_pred cccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-c-cEEhHHhccCCC
Confidence 345556666665554431 12234555666666666543 33333455666677777666543 2 223322 4556
Q ss_pred CcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1065 NLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1065 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
+|+.+++..+ ++ .++...|.++++|+.+++..
T Consensus 344 ~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 344 SLSNINFPLS-LR-KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEG
T ss_pred CCCEEEECcc-cc-EehHHHhhCCCCCCEEEECC
Confidence 6666666555 32 34555666677777666643
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.53 E-value=1.8e-06 Score=96.21 Aligned_cols=259 Identities=14% Similarity=0.113 Sum_probs=140.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
..+++|++..++++..++..... .......|.|+|++|+|||++|+.+++. ....| +.+......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~--------- 92 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIE--------- 92 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCC---------
T ss_pred HHHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhcc---------
Confidence 45799999999999998865321 1123456899999999999999999863 22222 122221111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCC------------------CCCcEEE
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAG------------------AAGSKIV 229 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~------------------~~~~~il 229 (1206)
........+.. ..+..+|+||+++.........+...+... .++..+|
T Consensus 93 ------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 93 ------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11111111111 245679999999876544333333222111 1135666
Q ss_pred EEccchHH-Hhhc--CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHHhhh----
Q 045303 230 VTTRNLVV-AERM--RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLGGLL---- 302 (1206)
Q Consensus 230 iTtr~~~~-~~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l---- 302 (1206)
.+|..... ...+ +....+.+.+++.++..+++...+.... .....+..+.+++.+.|.|-.+..+...+
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 234 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFA 234 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 66654321 1111 1225789999999999999987764322 12234677888999999996554433221
Q ss_pred --CCCC--ChhHHHHHHhhhccccCCCCchHHHHHhhcCCChhHHHHHhhhcCCCCCcccCHHHHHHHHHHcCCcccccC
Q 045303 303 --RGRD--DPRDWEFVLKNDIWNLRDSDILPALRVSYHFLPPQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYS 378 (1206)
Q Consensus 303 --~~~~--~~~~w~~~~~~~~~~~~~~~v~~~l~~s~~~L~~~~k~~~~~l~~fp~~~~~~~~~l~~~w~~~g~~~~~~~ 378 (1206)
.+.. ..+.....+. .+..+...++...+..+..++-. .+..+....+... .|.
T Consensus 235 ~~~~~~~i~~~~~~~~~~-------------~~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~---lg~------ 291 (338)
T 3pfi_A 235 DVNDEEIITEKRANEALN-------------SLGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAA---LSE------ 291 (338)
T ss_dssp HHTTCSEECHHHHHHHHH-------------HHTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHH---TTC------
T ss_pred HhhcCCccCHHHHHHHHH-------------HhCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHH---hCC------
Confidence 1110 1222222221 11222334555555666555544 4444444443321 121
Q ss_pred CCCHHHHHHHHHH-HHHhCCccccccCC
Q 045303 379 GRKMEDLGREFVR-ELHSRSLFQQSSKG 405 (1206)
Q Consensus 379 ~~~~~~~~~~~l~-~L~~~~ll~~~~~~ 405 (1206)
......++++ .|++.+++.....|
T Consensus 292 ---~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 292 ---DENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp ---CHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred ---CHHHHHHHHhHHHHHcCceecCCCc
Confidence 1233455555 78889999876544
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.51 E-value=4e-06 Score=95.45 Aligned_cols=57 Identities=9% Similarity=-0.036 Sum_probs=36.0
Q ss_pred ccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCee
Q 045303 987 AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDL 1046 (1206)
Q Consensus 987 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 1046 (1206)
..|.+|.+|+.+.+..+ +...-...|.+|++|+.+++..+ ...+...|.++++|+.+
T Consensus 337 ~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEEEE
T ss_pred HhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCcEE
Confidence 45667777777777665 44444456777777887777654 22334567777777654
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.46 E-value=2.8e-07 Score=103.34 Aligned_cols=104 Identities=19% Similarity=0.087 Sum_probs=80.1
Q ss_pred EEecccCCcccchhhcCCCCcceeeecc-ccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccC
Q 045303 951 LGVESCSKLESLAERLDNTSLEEITILN-LENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCEN 1029 (1206)
Q Consensus 951 L~l~~~~~l~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 1029 (1206)
++.++++.++.+|......+|+.|++++ |.+.+..+..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 3444443455566522347789999986 766666667889999999999999988887777888899999999999998
Q ss_pred ccccccccCCCCccCeeeeecCCCCc
Q 045303 1030 LKALPNCMHNLTSLLDLDIRGCPSVV 1055 (1206)
Q Consensus 1030 ~~~~p~~~~~l~~L~~L~L~~n~~~~ 1055 (1206)
.+..+..|..++ |+.|+|.+|++..
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ceeCHHHcccCC-ceEEEeeCCCccC
Confidence 876666666666 9999999998764
No 168
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=4.1e-07 Score=92.22 Aligned_cols=46 Identities=26% Similarity=0.324 Sum_probs=38.8
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...++||+++++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999998542 3456889999999999999999873
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.38 E-value=5.5e-07 Score=95.02 Aligned_cols=175 Identities=16% Similarity=0.074 Sum_probs=98.4
Q ss_pred CCccccch---hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGRE---KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~---~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
..+|+|++ ..++.+..+.... ..+.+.|+|++|+|||++|+.+++. .......+.|+.+....+.
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~---- 94 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI---- 94 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS----
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH----
Confidence 35677743 5556666655432 3468899999999999999999873 2222223455554321100
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhh--HHhhhccCCCC-CCC-cEEEEEccchH----
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIR--WSELRCPFVAG-AAG-SKIVVTTRNLV---- 236 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~--~~~l~~~l~~~-~~~-~~iliTtr~~~---- 236 (1206)
+.+. + +.+ .++.+||+||++...... ...+...+... ..+ .++|+||+...
T Consensus 95 --~~~~-----------------~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 --STAL-----------------L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp --CGGG-----------------G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred --HHHH-----------------H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0000 0 011 345799999997653222 22222221110 112 24777776421
Q ss_pred -----HHhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHHH
Q 045303 237 -----VAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTLG 299 (1206)
Q Consensus 237 -----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 299 (1206)
+...+.....+.+.+++.++..+++...+...+. .-..+..+.+++.++|.+-.+..+.
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL----QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC----CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 1111112257899999999999999887642221 1224667889999999887665443
No 170
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.37 E-value=1.7e-06 Score=97.25 Aligned_cols=196 Identities=14% Similarity=0.104 Sum_probs=109.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccc-eeEEEEEcCCCChHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 165 (1206)
...+++|+++.++.+..++... ....+.|+|++|+|||++|+.++........+. ....+..+...... .+.
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 107 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVR 107 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHT
T ss_pred CHHHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHH
Confidence 3467999999999999988543 222389999999999999999987421111121 12222222222222 222
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-HHhhc-CC
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM-RA 243 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~~-~~ 243 (1206)
+....+........... .....-.+++-++++|+++.........+...+.......++|++|.... +...+ ..
T Consensus 108 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKH----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp THHHHHHHSCCCCCCTT----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHHhhhcccccchh----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 22211111000000000 00011123556999999977654444555444433345667777765432 11111 12
Q ss_pred CCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 045303 244 DPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKT 297 (1206)
Q Consensus 244 ~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 297 (1206)
...+.+.+++.++..+.+...+...+. . -..+..+.|++.++|.|-.+..
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~---i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENV-K---CDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTC-C---CCHHHHHHHHHHTSSCHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 237889999999999999887643221 1 2246788899999999876443
No 171
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.31 E-value=9.6e-06 Score=92.40 Aligned_cols=181 Identities=19% Similarity=0.153 Sum_probs=103.3
Q ss_pred CCCccccchhHH---HHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHH
Q 045303 87 TEPKVYGREKEK---EKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRV 163 (1206)
Q Consensus 87 ~~~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 163 (1206)
.-.+++|++..+ ..+...+... +...+.|+|++|+||||+|+.+++. ....| +.++........
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ 90 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE 90 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH
Confidence 346799999888 6777777543 3468999999999999999999873 22222 222222111111
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEE-EccchH--HH-h
Q 045303 164 TKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVV-TTRNLV--VA-E 239 (1206)
Q Consensus 164 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~ili-Ttr~~~--~~-~ 239 (1206)
.+.++... ......+++.+|++|+++.......+.+...+.. + ...+|. ||.+.. +. .
T Consensus 91 ir~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHH
Confidence 12211110 1111246788999999987654444444433333 2 233443 544432 11 1
Q ss_pred hcCCCCceeCCCCChhhHHHHHHHhhhCCCCC---CCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 240 RMRADPVYQLKKLSDDDCLCVLTQISLGARDF---TRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 240 ~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
......++.+.+++.++..+++.+.+...... ....-..+..+.+++.++|.+-.+..+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 11233478899999999999998876431110 111223567788889999988655433
No 172
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.26 E-value=9.6e-06 Score=91.51 Aligned_cols=195 Identities=12% Similarity=0.062 Sum_probs=105.4
Q ss_pred CCccccchhHHHHH---HHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEE----cCCCCh
Q 045303 88 EPKVYGREKEKEKI---IELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCV----SDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l---~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~----~~~~~~ 160 (1206)
..+++|++..++.+ .+.+.... ...+.+.|+|++|+|||++|+.+++.. ..... .+.+.. +.....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l--~~~~~-~~~~~~~~~~~~~~~~ 115 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDTP-FTAIAGSEIFSLEMSK 115 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSCC-EEEEEGGGGSCSSSCH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh--cccCC-cccccchhhhhcccch
Confidence 45799999987764 44444322 234689999999999999999998732 21111 111111 112233
Q ss_pred HHHHHHHHHhccCCC------------------------------CCCCCHHHHHHHHHHHh-----CCC----ceEEEE
Q 045303 161 PRVTKSILESIANVT------------------------------VDDNNLNSLQVKLKERL-----SGK----KFLLVL 201 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~------------------------------~~~~~~~~~~~~l~~~l-----~~~----~~Llvl 201 (1206)
.+...+.++...... ........+...+.... .++ +.+|++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~I 195 (368)
T 3uk6_A 116 TEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI 195 (368)
T ss_dssp HHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEE
T ss_pred hHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEE
Confidence 334433333311100 00000122222222111 133 459999
Q ss_pred eCCCccCHhhHHhhhccCCCCCCCcEEEEEccc-----------------hHHHhhcCCCCceeCCCCChhhHHHHHHHh
Q 045303 202 DDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN-----------------LVVAERMRADPVYQLKKLSDDDCLCVLTQI 264 (1206)
Q Consensus 202 Ddv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~-----------------~~~~~~~~~~~~~~l~~l~~~e~~~l~~~~ 264 (1206)
|+++.........+...+...... .++++|.. +.+.. ....+.+.+++.++..+++...
T Consensus 196 DEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 196 DEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp ESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHHH
T ss_pred hhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHHH
Confidence 999887655555555444433333 34444431 11222 2235799999999999999877
Q ss_pred hhCCCCCCCChhhHHHHHHHHHhcC-CcchHHHH
Q 045303 265 SLGARDFTRHQSLKEVGEQIVIKCG-GLPLAAKT 297 (1206)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~ 297 (1206)
+..... .-..+..+.|++.+. |.|-.+..
T Consensus 272 ~~~~~~----~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 272 CEEEDV----EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHTTC----CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHcCC----CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 643221 123466788888887 77755443
No 173
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.24 E-value=5.1e-06 Score=89.83 Aligned_cols=187 Identities=16% Similarity=0.082 Sum_probs=101.4
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLR-------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
...+++|.++.++++.+.+...... +....+.+.|+|++|+|||++|+.++.. ....| +.+..+.-.
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~- 88 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELV- 88 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHH-
Confidence 3467999999999998877432000 0123457899999999999999999873 22221 122211110
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCcc-----------CH---hhHHhhhccCC--CCC
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNE-----------NY---IRWSELRCPFV--AGA 223 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~~---~~~~~l~~~l~--~~~ 223 (1206)
.. ............+......++.+|+||+++.. .. .....+...+. ...
T Consensus 89 -------------~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 -------------KK-FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------CC-STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------Hh-ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 00001111222233333456789999999642 11 11112221111 223
Q ss_pred CCcEEEEEccchHHH-----hhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHH
Q 045303 224 AGSKIVVTTRNLVVA-----ERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKT 297 (1206)
Q Consensus 224 ~~~~iliTtr~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~ 297 (1206)
.+..||.||...... ....-...+.++..+.++..+++...+..... ... .....+++.+.|. |-.|..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~----~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AED----VNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTT----CCHHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCc----CCHHHHHHHcCCCCHHHHHH
Confidence 467788888754321 11112246889999999999999887643221 111 1245677777774 444443
Q ss_pred H
Q 045303 298 L 298 (1206)
Q Consensus 298 ~ 298 (1206)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=4.9e-06 Score=97.66 Aligned_cols=196 Identities=16% Similarity=0.121 Sum_probs=106.5
Q ss_pred CCccccchhHHHHHHHHHhcCCC-----------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL-----------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSD 156 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~-----------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 156 (1206)
..+++|++..++++..++..... .+.+..+.+.|+|++|+|||++|+.+++.. .+ .++.+.++.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 46799999999999999965110 001234689999999999999999998732 12 123333333
Q ss_pred CCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHH--HhCCCceEEEEeCCCccCHh---hHHhhhccCCCCCCCcEEEEE
Q 045303 157 DFDVPRVTKSILESIANVTVDDNNLNSLQVKLKE--RLSGKKFLLVLDDVWNENYI---RWSELRCPFVAGAAGSKIVVT 231 (1206)
Q Consensus 157 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~--~l~~~~~LlvlDdv~~~~~~---~~~~l~~~l~~~~~~~~iliT 231 (1206)
.... .+....+....... ........... ...+++.+||+|+++..... .+..+...+.. .+..||++
T Consensus 113 ~~~~-~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli 185 (516)
T 1sxj_A 113 VRSK-TLLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILI 185 (516)
T ss_dssp CCCH-HHHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEE
T ss_pred cchH-HHHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEE
Confidence 3232 23333222221110 00000000000 12357789999999764321 12223222221 23335555
Q ss_pred ccchH---HHhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHHHH
Q 045303 232 TRNLV---VAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKTLG 299 (1206)
Q Consensus 232 tr~~~---~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 299 (1206)
+.... +.........+.+++++.++..+++...+...+. ..+ .++...|++.++|. +-++..+.
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 44322 2222222346899999999999998876643221 111 24577889999984 55555553
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.22 E-value=2.6e-08 Score=111.66 Aligned_cols=152 Identities=14% Similarity=0.021 Sum_probs=87.4
Q ss_pred cccceEEecccCCccc----chhhcC--CCCcceeeeccccCcCccc-ccccCCCccceeeccccCCcccccCCC-----
Q 045303 946 QALKYLGVESCSKLES----LAERLD--NTSLEEITILNLENLKSLP-AGLHNLHHLQKIWIGYCPNLESFPEEG----- 1013 (1206)
Q Consensus 946 ~~L~~L~l~~~~~l~~----~~~~~~--~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~----- 1013 (1206)
+.++.|++++|..-.. +...+. ..+|++|++++|.+..... .....+++|++|+|++|.+.......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4566667766654321 122211 2577778887776543222 222345677888888886643222111
Q ss_pred CCCCCccEEEeccccCcc----ccccccCCCCccCeeeeecCCCCccC----CC-CCCCCCcCeEEEeCcCCCCC----C
Q 045303 1014 LPSTKLTELTIWDCENLK----ALPNCMHNLTSLLDLDIRGCPSVVSF----PE-DGFPTNLQSLEVRGLKISKP----L 1080 (1206)
Q Consensus 1014 ~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~~----~~-~~~~~~L~~L~Ls~n~l~~~----~ 1080 (1206)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.+...- +. ...+++|++|+|++|.++.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 234678888888887654 23444566777888888888764321 11 13445788888888877621 1
Q ss_pred CccCCCCCCCcceEEeec
Q 045303 1081 PEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1081 p~~~~~~l~~L~~L~ls~ 1098 (1206)
.. .+...++|++|+|++
T Consensus 232 ~~-~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 232 AR-AAREHPSLELLHLYF 248 (372)
T ss_dssp HH-HHHHCSSCCEEECTT
T ss_pred HH-HHHhCCCCCEEeccC
Confidence 11 234557777777765
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.20 E-value=5.6e-06 Score=94.66 Aligned_cols=161 Identities=18% Similarity=0.156 Sum_probs=94.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccc--eeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--IKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
...+.|+|++|+||||||+.+++. ....+. .++++.. ..+..++...+... .. ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----CH----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----cH----HHHHHHhc
Confidence 568899999999999999999873 323322 2334332 23444444444321 11 12333344
Q ss_pred CCceEEEEeCCCccCH--hhHHhhhccCCC-CCCCcEEEEEccchH---------HHhhcCCCCceeCCCCChhhHHHHH
Q 045303 194 GKKFLLVLDDVWNENY--IRWSELRCPFVA-GAAGSKIVVTTRNLV---------VAERMRADPVYQLKKLSDDDCLCVL 261 (1206)
Q Consensus 194 ~~~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~~~~iliTtr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l~ 261 (1206)
.++.+|++||++.... ...+.+...+.. ...|..||+||.... +...+.....+.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 4677999999965432 122223222211 134678888887621 2222333357899999999999999
Q ss_pred HHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 045303 262 TQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKT 297 (1206)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 297 (1206)
...+...+. ..+ .+++..|++.++|.+-.+..
T Consensus 273 ~~~~~~~~~-~i~---~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 273 RKMLEIEHG-ELP---EEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHHTC-CCC---TTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHHH
Confidence 887642211 111 24567788889988865543
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.19 E-value=9.2e-06 Score=86.62 Aligned_cols=188 Identities=13% Similarity=0.041 Sum_probs=99.0
Q ss_pred CCccccchhHHHHHHHHHhc---CCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLN---DNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
-.+++|.+..++++.+++.. ... .+....+.+.|+|++|+|||++|+.++.. .... .+.+..+.-.+
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSS--
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHh--
Confidence 45789999888877665532 110 00123456889999999999999999873 2221 22222222110
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC---------------HhhHHhhhccCCC--CCC
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN---------------YIRWSELRCPFVA--GAA 224 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---------------~~~~~~l~~~l~~--~~~ 224 (1206)
.. ...........+.......+.+|+||+++... ......+...+.. ...
T Consensus 78 --------~~-----~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 78 --------VI-----GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp --------SS-----TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred --------hc-----cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 00 00111122222333334567899999997531 0111122222211 123
Q ss_pred CcEEEEEccchHH-Hhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHH
Q 045303 225 GSKIVVTTRNLVV-AERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTL 298 (1206)
Q Consensus 225 ~~~iliTtr~~~~-~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 298 (1206)
+..||.||..... .... .-...+.++..+.++..+++...+..... ..........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 5667777755432 1111 12246788999999999999877643221 11122234778888888754 44444
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.19 E-value=5.5e-06 Score=92.95 Aligned_cols=196 Identities=11% Similarity=0.094 Sum_probs=103.2
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCc-c-ccc--ccceeE-------------
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDD-R-VQR--HFQIKG------------- 150 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~-~-~~~--~f~~~~------------- 150 (1206)
-.+++|++..++.+..++.... .... +.|+|++|+||||+|+.++... . ..+ .++...
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~----~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR----DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT----CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHHhcCCHHHHHHHHHHHhhCC----CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 3568999999888887762221 1233 8999999999999999887621 0 000 000000
Q ss_pred -----EEEEcCC-C--ChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCC
Q 045303 151 -----WTCVSDD-F--DVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAG 222 (1206)
Q Consensus 151 -----wv~~~~~-~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~ 222 (1206)
++..... . ......+++++.+..... ..... .+. .+.+++-++|+|+++..+......+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111100 0 000011222222111000 00000 000 01336679999999876654445554444333
Q ss_pred CCCcEEEEEccchH-HHhh-cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhh-HHHHHHHHHhcCCcchHHHHH
Q 045303 223 AAGSKIVVTTRNLV-VAER-MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSL-KEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 223 ~~~~~iliTtr~~~-~~~~-~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plal~~~ 298 (1206)
..++.+|++|.... +... ......+++.+++.++..+.+...+...+. .-. ++.++.|++.++|.+-.+...
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI----QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC----EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC----CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 34677777776532 2111 122357899999999999999877632221 111 356788999999988655443
No 179
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.17 E-value=2.6e-05 Score=85.97 Aligned_cols=182 Identities=14% Similarity=0.090 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhc---
Q 045303 95 EKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESI--- 171 (1206)
Q Consensus 95 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l--- 171 (1206)
++..+.+...+.... -.+.+.++|++|+|||++|+.+++.......-. +..+.. -...+.+...-
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~---~~~c~~----c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQG---HKSCGH----CRGCQLMQAGTHPD 75 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSC----SHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC---CCCCCC----CHHHHHHhcCCCCC
Confidence 556677777775432 345799999999999999999886321111000 000000 00111111100
Q ss_pred ----cCCC-CCCCCHHHHHHHHHHHh-----CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-HHhh
Q 045303 172 ----ANVT-VDDNNLNSLQVKLKERL-----SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAER 240 (1206)
Q Consensus 172 ----~~~~-~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~ 240 (1206)
.... ......+++.+ +.+.+ .+++-++|+|+++..+......+...+.....++.+|++|.... +...
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred EEEEeccccCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 0000 01122233322 22222 24577999999988765555666555554445677777776542 2221
Q ss_pred c-CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHHH
Q 045303 241 M-RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKTL 298 (1206)
Q Consensus 241 ~-~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 298 (1206)
+ .....+++.++++++..+.+.... .. .++.+..+++.++|.|..+..+
T Consensus 155 i~SRc~~~~~~~~~~~~~~~~L~~~~------~~---~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 155 LRSRCRLHYLAPPPEQYAVTWLSREV------TM---SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHC------CC---CHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhhcceeeeCCCCCHHHHHHHHHHhc------CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 233578999999999999998764 11 1356678999999999765443
No 180
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.11 E-value=5.2e-06 Score=78.80 Aligned_cols=114 Identities=13% Similarity=-0.057 Sum_probs=68.2
Q ss_pred ccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHH
Q 045303 90 KVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILE 169 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 169 (1206)
.++|+...+.++.+.+..... ...-|.|+|.+|+|||++|+.+++.... .... .+ +.++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 589999999999998865321 2235789999999999999999874211 1112 22 555433221
Q ss_pred hccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 170 SIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
.... ..+... +.-.|++|+++.........+...+.......++|.||..
T Consensus 66 ---------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ---------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ---------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ---------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 1111 111111 2347899999877655555555544444456678777765
No 181
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.11 E-value=2.2e-07 Score=104.02 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=40.7
Q ss_pred CceeEEEecCCCCcccCC-ccc----c-Cccccceeecccccccc--ccccccccccccEEecCCCcccccccccc----
Q 045303 500 PRLRVFSLCGYSNIFSLP-NEI----G-NLKHLRCLNLSRTRIQI--LPESINSLYNLHTILLEDCWKLKKLCKDM---- 567 (1206)
Q Consensus 500 ~~L~~L~L~~~~~~~~lp-~~~----~-~l~~L~~L~Ls~n~i~~--lp~~~~~L~~L~~L~L~~n~~~~~lp~~~---- 567 (1206)
+.|+.|+|++| .+.... ..| . ..++|++|+|++|.|.. +..-...+++|++|+|++|.........+
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45666666666 443221 122 1 22566666666666652 22222345566666666663222111222
Q ss_pred -cCCCccceeecCCCC
Q 045303 568 -GNLTKLRHLRNSNAD 582 (1206)
Q Consensus 568 -~~L~~L~~L~l~~n~ 582 (1206)
...++|++|+|++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP 166 (372)
T ss_dssp HSTTCCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCC
Confidence 234566666666665
No 182
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.08 E-value=2.1e-05 Score=86.73 Aligned_cols=178 Identities=19% Similarity=0.135 Sum_probs=100.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHH
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKS 166 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 166 (1206)
.-.+++|++..++.+..++.... ...++.++|++|+|||++|+.+++. .. ...+.+..+. .. ....+.
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~-~~-~~~i~~ 91 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSD-CK-IDFVRG 91 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTT-CC-HHHHHT
T ss_pred CHHHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEcccc-cC-HHHHHH
Confidence 34679999999999999997432 3467888899999999999999873 21 1223333222 11 112122
Q ss_pred HHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC-HhhHHhhhccCCCCCCCcEEEEEccchH-HHhhc-CC
Q 045303 167 ILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN-YIRWSELRCPFVAGAAGSKIVVTTRNLV-VAERM-RA 243 (1206)
Q Consensus 167 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~~-~~ 243 (1206)
.+...... ....+++.++|+|+++... ......+...+.....++++|+||.... +...+ ..
T Consensus 92 ~~~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 11111000 0012367899999998765 4444444433333335677888876643 11110 11
Q ss_pred CCceeCCCCChhhHHHHH-------HHhhhCCCCCCCChhhHHHHHHHHHhcCCcchH
Q 045303 244 DPVYQLKKLSDDDCLCVL-------TQISLGARDFTRHQSLKEVGEQIVIKCGGLPLA 294 (1206)
Q Consensus 244 ~~~~~l~~l~~~e~~~l~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 294 (1206)
...+++++++.++-.+++ ...+...+. ..+ ..+.++.+++.++|.+-.
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~--~~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIA--DMKVVAALVKKNFPDFRK 211 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBS--CHHHHHHHHHHTCSCTTH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCC--cHHHHHHHHHhCCCCHHH
Confidence 246899999988843332 222211111 111 126677788888887654
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.07 E-value=2.2e-05 Score=86.06 Aligned_cols=161 Identities=14% Similarity=0.069 Sum_probs=89.4
Q ss_pred ccccchhHHHHHHHHHhcCC---------CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 90 KVYGREKEKEKIIELLLNDN---------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
+++|.+..++++.+++.... .........+.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 58999999988887664210 001224457899999999999999988763211111111123333211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCcc---------CHhhHHhhhccCCCCCCCcEEEEE
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNE---------NYIRWSELRCPFVAGAAGSKIVVT 231 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~~~l~~~l~~~~~~~~iliT 231 (1206)
.+... ............+... ++.+|++|+++.. .......+...+.....+..||.|
T Consensus 109 ---------~l~~~-~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQ-YIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCS-STTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhh-cccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 11100 0011112222222222 3469999999743 333334444444444456778888
Q ss_pred ccchHHHh------hc--CCCCceeCCCCChhhHHHHHHHhhh
Q 045303 232 TRNLVVAE------RM--RADPVYQLKKLSDDDCLCVLTQISL 266 (1206)
Q Consensus 232 tr~~~~~~------~~--~~~~~~~l~~l~~~e~~~l~~~~~~ 266 (1206)
|....... .+ +....+.+++++.++..+++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 76432110 00 1125789999999999999987764
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.07 E-value=0.00014 Score=79.25 Aligned_cols=190 Identities=12% Similarity=0.050 Sum_probs=103.5
Q ss_pred CCccccchhHHHHHHHHHhcC---C---CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLND---N---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
-.+++|.+..++.|.+.+... . .......+.+.|+|++|+|||++|+.++.... . .-++.+....
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~-----~~~~~i~~~~--- 81 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-N-----STFFSISSSD--- 81 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-S-----CEEEEEECCS---
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-C-----CcEEEEEhHH---
Confidence 457899999988888776321 0 00112346889999999999999999997320 1 1222222210
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH-------hh----HHhhhccC---CCCCCCcE
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY-------IR----WSELRCPF---VAGAAGSK 227 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------~~----~~~l~~~l---~~~~~~~~ 227 (1206)
+.. .........+...+...-..++.+|+||+++.... .. ...+...+ .....+..
T Consensus 82 ---------l~~-~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 82 ---------LVS-KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp ---------SCC-SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred ---------HHh-hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 000 00111222222222233346788999999975310 00 11121111 11234556
Q ss_pred EEEEccchH-HHhhc--CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHHHHh
Q 045303 228 IVVTTRNLV-VAERM--RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKTLGG 300 (1206)
Q Consensus 228 iliTtr~~~-~~~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 300 (1206)
||.||.... +...+ +-...+.+...+.++..+++......... . ........|++.+.|. +-.|..+..
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~---l~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-S---LTEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-C---CCHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666665432 11111 22356788999999999999887632211 1 1235677899999887 444555543
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.04 E-value=3e-05 Score=82.91 Aligned_cols=172 Identities=14% Similarity=0.139 Sum_probs=92.3
Q ss_pred CccccchhHHHHHHHH-------HhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 89 PKVYGREKEKEKIIEL-------LLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~-------L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
..++|+...++++... +.... ....+.+.|+|++|+|||++|+.+++. ....| +.+....
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~----- 99 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPD----- 99 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGG-----
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHH-----
Confidence 4578888877766663 32221 235678999999999999999999873 21111 1222211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCcc---------CHhhH-HhhhccCC---CCCCCcEE
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNE---------NYIRW-SELRCPFV---AGAAGSKI 228 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---------~~~~~-~~l~~~l~---~~~~~~~i 228 (1206)
.+.+. ........+...+......++.+|++|+++.. ....+ ..+...+. .......|
T Consensus 100 --------~~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 100 --------KMIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------GCTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------HhcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 01000 00000011222233333467889999998642 01112 22222221 12334557
Q ss_pred EEEccchHHHhh--c-CC-CCceeCCCCCh-hhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc
Q 045303 229 VVTTRNLVVAER--M-RA-DPVYQLKKLSD-DDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL 291 (1206)
Q Consensus 229 liTtr~~~~~~~--~-~~-~~~~~l~~l~~-~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 291 (1206)
|.||........ . .. ...+.+++++. ++..+++.... .. ..+....+++.+.|.
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NF---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CS---CHHHHHHHHHHHTTS
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CC---CHHHHHHHHHHhcCC
Confidence 777776643322 1 11 34678888988 66666665531 11 135677888888884
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.03 E-value=0.0001 Score=81.80 Aligned_cols=187 Identities=15% Similarity=0.041 Sum_probs=101.9
Q ss_pred CCCccccchhHHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELLLND----N--LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.-.+++|.+..++.|.+++... . .......+-|.|+|++|+|||++|+.++.. ....| +.+...
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH-----
Confidence 3457999999999998876321 0 001123456889999999999999999973 22222 122111
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHh-----------hHHhhhccC---CCCCCCc
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYI-----------RWSELRCPF---VAGAAGS 226 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~-----------~~~~l~~~l---~~~~~~~ 226 (1206)
+ +..... ......+...+...-..++.+|+||+++..... ....+...+ .....+.
T Consensus 119 -~----l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -D----LVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -H----HHSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -H----Hhhhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 1 111110 111222222222233457889999999754211 011222111 1123456
Q ss_pred EEEEEccchH-----HHhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHHHH
Q 045303 227 KIVVTTRNLV-----VAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKTLG 299 (1206)
Q Consensus 227 ~iliTtr~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 299 (1206)
.||.||.... +.. +-...+.+...+.++..+++...+..... . ........|++.+.|. +-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~---~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS-V---LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB-C---CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC-C---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666665432 222 23356788999999999999887643211 1 1234567888899885 44455444
No 187
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.02 E-value=0.0001 Score=80.79 Aligned_cols=188 Identities=15% Similarity=0.008 Sum_probs=104.2
Q ss_pred CCccccchhHHHHHHHHHhcC------CCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLND------NLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~------~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
-.+++|.+..+++|.+++... ........+-+.|+|++|+|||++|+.++.. ....| +.+.. .
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~------~ 85 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSS------S 85 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEH------H
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEch------H
Confidence 457999999999998877310 0001223467899999999999999999873 22222 12221 1
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHH-HHHHHhCCCceEEEEeCCCccCH-----------hhHHhhhcc---CCCCCCCc
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQV-KLKERLSGKKFLLVLDDVWNENY-----------IRWSELRCP---FVAGAAGS 226 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~---l~~~~~~~ 226 (1206)
++ ..... ...+.... .+...-..++.+|+||+++.... .....+... +.....+.
T Consensus 86 ~l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 86 DL----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp HH----HTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred HH----hhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 11 11110 01122222 22222345678999999975321 001222212 22233456
Q ss_pred EEEEEccchHHH-hhc--CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHHHHh
Q 045303 227 KIVVTTRNLVVA-ERM--RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKTLGG 300 (1206)
Q Consensus 227 ~iliTtr~~~~~-~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 300 (1206)
.||.||...... ..+ +-...+.++..+.++-.+++...+..... .........|++.+.|. +-.|..+..
T Consensus 156 ~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 156 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC----VLTKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC----CCCHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC----CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666677653211 110 22346788899999999999987643221 11234567888888874 545554443
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.99 E-value=4.7e-05 Score=83.81 Aligned_cols=179 Identities=17% Similarity=0.126 Sum_probs=95.3
Q ss_pred CCccc-cch--hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVY-GRE--KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~v-Gr~--~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
.+.|+ |.. .....+..+..... .....+.|+|++|+|||+||+.+++.. ...-..++++.+ .++.
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~------~~~~ 77 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSA------DDFA 77 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEH------HHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEH------HHHH
Confidence 34565 533 33444555443321 234578999999999999999998732 111112334432 2333
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH--hhHHhhhccCCC-CCCCcEEEEEccchH-----
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY--IRWSELRCPFVA-GAAGSKIVVTTRNLV----- 236 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~~~l~~~l~~-~~~~~~iliTtr~~~----- 236 (1206)
..+...+.. ..... +..... ++.+|++||++.... .....+...+.. ...+..||+|+....
T Consensus 78 ~~~~~~~~~-----~~~~~----~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 78 QAMVEHLKK-----GTINE----FRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHH-----TCHHH----HHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHc-----CcHHH----HHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 344333321 11112 222222 367999999976432 111222222211 123557888776421
Q ss_pred ----HHhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchH
Q 045303 237 ----VAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLA 294 (1206)
Q Consensus 237 ----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 294 (1206)
+...+.....+++++ +.++..+++...+...+. .. ..++.+.|++.+ |..-.
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-~l---~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL-EL---RKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC-CC---CHHHHHHHHHHC-SSHHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHhC-CCHHH
Confidence 122222234689999 999999999887643221 11 245677788888 76543
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.96 E-value=7e-06 Score=82.31 Aligned_cols=46 Identities=26% Similarity=0.284 Sum_probs=38.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...++||+.+++++.+++... ..+.+.|+|++|+|||++|+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999998542 3456789999999999999999873
No 190
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.94 E-value=0.00026 Score=80.33 Aligned_cols=107 Identities=13% Similarity=0.146 Sum_probs=75.1
Q ss_pred cccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC--CCC
Q 045303 986 PAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED--GFP 1063 (1206)
Q Consensus 986 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~ 1063 (1206)
...|.++..|+.+.+.++ ....-...|.++++|+.+.+.. .+...-...|.++.+|+.++|..+ + ..+... ..+
T Consensus 258 ~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v-~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I-TQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C-CEECTTTTTTC
T ss_pred cceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c-cEehHhHhhCC
Confidence 345778888888888664 3444445677888888888853 444444567888888998888765 3 233333 567
Q ss_pred CCcCeEEEeCcCCCCCCCccCCCCCCCcceEEeec
Q 045303 1064 TNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTICG 1098 (1206)
Q Consensus 1064 ~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls~ 1098 (1206)
.+|+.+.+..+ ++ .+....|.+|++|+.+++.+
T Consensus 334 ~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 334 EQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp TTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESS
T ss_pred CCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECC
Confidence 88888888755 43 56666888888888888865
No 191
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.88 E-value=0.0001 Score=81.88 Aligned_cols=188 Identities=13% Similarity=0.006 Sum_probs=102.2
Q ss_pred CCccccchhHHHHHHHHHhcC----CC--CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLND----NL--RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
-.+++|.+..++++.+++... .. ......+.+.|+|++|+|||++|+.++.. .... .+.+.++.-..
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~-- 155 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS-- 155 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC--
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc--
Confidence 356999999999998877431 00 00124567899999999999999999873 2211 22333321110
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHH-HHHHhCCCceEEEEeCCCccC-----------HhhHHhhhccCCC----CCCC
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVK-LKERLSGKKFLLVLDDVWNEN-----------YIRWSELRCPFVA----GAAG 225 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~~-----------~~~~~~l~~~l~~----~~~~ 225 (1206)
. . .......... +...-..++.+|+||+++... ......+...+.. ...+
T Consensus 156 ------------~-~-~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 ------------K-W-VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp ------------S-S-TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred ------------c-c-cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 0 0011111122 222223567899999995321 0111222222211 1234
Q ss_pred cEEEEEccchH-HHhhc--CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHHHHh
Q 045303 226 SKIVVTTRNLV-VAERM--RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKTLGG 300 (1206)
Q Consensus 226 ~~iliTtr~~~-~~~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 300 (1206)
..||.||.... +...+ +....+.+...+.++..+++...+..... . -..+....|++.+.|. +-+|..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~---l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-C---LSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-C---CCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-C---ccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55666665432 11111 22246788889999999998877643211 1 1235677888889884 555655543
No 192
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.87 E-value=8.4e-05 Score=82.33 Aligned_cols=175 Identities=12% Similarity=0.134 Sum_probs=101.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccc-eeEEEEEcCCCChHHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-IKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i 167 (1206)
.+++|.+..++.|..++... +...+.++|++|+||||+|+.++.... ...+. .+..+..+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~-------- 89 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRG-------- 89 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCS--------
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCccccc--------
Confidence 56889999999998888643 222389999999999999999987311 11111 111111111111
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHH------hCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH-HHhh
Q 045303 168 LESIANVTVDDNNLNSLQVKLKER------LSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV-VAER 240 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~------l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~-~~~~ 240 (1206)
.+...+.+... ..+.+-++|+|+++.........+...+......+++|++|.... +...
T Consensus 90 -------------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~ 156 (340)
T 1sxj_C 90 -------------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPA 156 (340)
T ss_dssp -------------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHH
T ss_pred -------------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchh
Confidence 12222112111 123467899999977654444544443333334566777665432 1111
Q ss_pred -cCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHH
Q 045303 241 -MRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAA 295 (1206)
Q Consensus 241 -~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 295 (1206)
......+.+.+++.++..+.+...+...+. . -..+..+.+++.++|.+-.+
T Consensus 157 i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~-~---i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 157 LLSQCTRFRFQPLPQEAIERRIANVLVHEKL-K---LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-C---BCHHHHHHHHHHHTTCHHHH
T ss_pred HHhhceeEeccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHH
Confidence 112346889999999999888876532211 1 12356778899999987643
No 193
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.86 E-value=0.001 Score=75.32 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=48.1
Q ss_pred cccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC--CCCCC
Q 045303 988 GLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED--GFPTN 1065 (1206)
Q Consensus 988 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~~ 1065 (1206)
.|.++++|+.+.+... ....-...|.+|.+|+.+.|..+ +...-..+|.++.+|+.+.+..+ + ..++.. ..+.+
T Consensus 283 aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v-~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V-TKIPESAFSNCTA 358 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C-CBCCGGGGTTCTT
T ss_pred ccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c-CEEhHhHhhCCCC
Confidence 3555566666666432 33333335555666666666432 33333445666666666666543 2 223222 45566
Q ss_pred cCeEEEeCcCCCCCCCccCCCCCCCcceEEee
Q 045303 1066 LQSLEVRGLKISKPLPEWGFNRFTSLRRFTIC 1097 (1206)
Q Consensus 1066 L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls 1097 (1206)
|+.+++.++... + ..+..+.+|+.+.+.
T Consensus 359 L~~i~~~~~~~~--~--~~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 359 LNNIEYSGSRSQ--W--NAISTDSGLQNLPVA 386 (394)
T ss_dssp CCEEEESSCHHH--H--HTCBCCCCC------
T ss_pred CCEEEECCceee--h--hhhhccCCCCEEEeC
Confidence 666666655432 1 134455666666654
No 194
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=1.8e-06 Score=95.63 Aligned_cols=163 Identities=17% Similarity=0.121 Sum_probs=85.4
Q ss_pred ccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccC--CCCccCeeeeecC--CCCcc----
Q 045303 985 LPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMH--NLTSLLDLDIRGC--PSVVS---- 1056 (1206)
Q Consensus 985 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~l~~L~~L~L~~n--~~~~~---- 1056 (1206)
+...+..+|+|+.|.|++|.... ++. + .+++|+.|+|..|.+.......+. .+|+|+.|+|+.+ ...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 33445567888888888773232 222 2 267888888887766543322332 6788888888632 11111
Q ss_pred ----CCCCCCCCCcCeEEEeCcCCCCCCCccC--CCCCCCcceEEeecCCCCceecCCCCCCCcceeeccCCCCccccCC
Q 045303 1057 ----FPEDGFPTNLQSLEVRGLKISKPLPEWG--FNRFTSLRRFTICGGCPDLVSLPPFPASLTGLEISDMPDLECLSSI 1130 (1206)
Q Consensus 1057 ----~~~~~~~~~L~~L~Ls~n~l~~~~p~~~--~~~l~~L~~L~ls~~~~~l~~lp~~~~~L~~L~~~~~~~~~~~~~~ 1130 (1206)
......+++|+.|+|++|.+....+... ...+++|++|+|+. +.++.... ..+...
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~--n~L~d~G~----------------~~L~~~ 302 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA--GVLTDEGA----------------RLLLDH 302 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS--SCCBHHHH----------------HHHHTT
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC--CCCChHHH----------------HHHHhh
Confidence 0111346788888888877653221111 12356777777754 22222100 000111
Q ss_pred CCCcCcccccccccCCCCCCCCCCCCcccc-ceecccCCh
Q 045303 1131 GENLTSLKYLYLIDCPKLKYFPEQGLPKSL-LQLHIKGCP 1169 (1206)
Q Consensus 1131 ~~~l~~L~~L~l~~n~~l~~l~~~~~~~~L-~~L~l~~c~ 1169 (1206)
...+++|+.|++++|. ++..-...+...+ ..+++++++
T Consensus 303 L~~l~~L~~L~L~~n~-i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 303 VDKIKHLKFINMKYNY-LSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHTTCSEEECCSBB-CCHHHHHHHHHHCCSEEECCSBC
T ss_pred cccCCcceEEECCCCc-CCHHHHHHHHHHcCCEEEecCCc
Confidence 1357889999998883 4432111111112 457777665
No 195
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.82 E-value=5.3e-05 Score=87.45 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=79.3
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccc-----cce--eEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-----FQI--KGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~-----f~~--~~wv~~~~~~~~ 160 (1206)
-++++||+.+++++...+.... ..-+.|+|++|+|||++|+.++.. .... ... .+.+.++
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC--------
T ss_pred CCCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC-----
Confidence 3569999999999999996532 235679999999999999999873 2111 011 1112222
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHHh-
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVAE- 239 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~~- 239 (1206)
....+ ........+. ...-..++.++++|.- . .....+...+ .. ...++|.+|.......
T Consensus 246 --------~~~~g--~~e~~~~~~~---~~~~~~~~~iLfiD~~--~--~a~~~L~~~L-~~-g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 --------TKYRG--EFEDRLKKVM---DEIRQAGNIILFIDAA--I--DASNILKPSL-AR-GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHHHHH---HHHHTCCCCEEEECC------------CCCT-TS-SSCEEEEECCTTTTHHH
T ss_pred --------ccccc--hHHHHHHHHH---HHHHhcCCeEEEEeCc--h--hHHHHHHHhh-cC-CCEEEEecCCHHHHHHH
Confidence 00000 0011222222 2222356789999921 1 1112222222 22 2456666665543111
Q ss_pred ------hcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 240 ------RMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 240 ------~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.......+.+++.+.++..+++....
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11123468999999999999998765
No 196
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.81 E-value=0.00028 Score=76.56 Aligned_cols=185 Identities=12% Similarity=0.025 Sum_probs=100.4
Q ss_pred CCccccchhHHHHHHHHHhcCC------CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLNDN------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
-.+++|.+..++.+.+++.... .......+.+.|+|++|+|||++|+.++.. ....| +.+..+.-.
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~~---~~i~~~~l~--- 91 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSATF---LNISAASLT--- 91 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCEE---EEEESTTTS---
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEeeHHHHh---
Confidence 4579999999999988774310 000123468899999999999999999873 22211 222222110
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHH-HHHHhCCCceEEEEeCCCccCH-----------hhHHhhh---ccCCC--CCC
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVK-LKERLSGKKFLLVLDDVWNENY-----------IRWSELR---CPFVA--GAA 224 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~---~~l~~--~~~ 224 (1206)
.. ........... +......++.+|++|+++.... .....+. ..+.. .+.
T Consensus 92 -----------~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 92 -----------SK--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -----------SS--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -----------hc--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 00 01111222222 2222345678999999965310 0011111 11111 123
Q ss_pred CcEEEEEccchH-----HHhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHH
Q 045303 225 GSKIVVTTRNLV-----VAERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTL 298 (1206)
Q Consensus 225 ~~~iliTtr~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 298 (1206)
+..||.||.... +... -...+.++..+.++..+++...+..... ....+....+++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~----~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS----PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC----CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 456677776532 2222 2246778888888888888776532211 1123567788899998875 55444
Q ss_pred H
Q 045303 299 G 299 (1206)
Q Consensus 299 ~ 299 (1206)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.80 E-value=7.2e-06 Score=90.75 Aligned_cols=11 Identities=9% Similarity=-0.320 Sum_probs=6.2
Q ss_pred CCCCCeEEEec
Q 045303 884 PPSLKRLTIYW 894 (1206)
Q Consensus 884 ~~~L~~L~l~~ 894 (1206)
+++|+.|.+.+
T Consensus 138 l~~L~~L~l~~ 148 (362)
T 2ra8_A 138 FAHFEGLFWGD 148 (362)
T ss_dssp HTTCSEEEECC
T ss_pred cchhhheeecC
Confidence 35666666543
No 198
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.80 E-value=0.00089 Score=73.56 Aligned_cols=177 Identities=17% Similarity=0.187 Sum_probs=95.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSI 167 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 167 (1206)
-..++|++..++.+...+..... .......++|+|++|+||||||+.++.. ....|. ..-+....
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~----~~sg~~~~-------- 88 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH----VTSGPVLV-------- 88 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE----EEETTTCC--------
T ss_pred HHHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE----EEechHhc--------
Confidence 35688998888887776643210 0123467899999999999999999873 221111 11111110
Q ss_pred HHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCC--------C----------CCcEEE
Q 045303 168 LESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAG--------A----------AGSKIV 229 (1206)
Q Consensus 168 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~--------~----------~~~~il 229 (1206)
...++.. +...+ .++.++++|+++.......+.+...+... + +...++
T Consensus 89 ------------~~~~l~~-~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 89 ------------KQGDMAA-ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ------------SHHHHHH-HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ------------CHHHHHH-HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0111111 11112 23457888988654432222222111100 0 011222
Q ss_pred -EEccchHHHhhcC--CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 045303 230 -VTTRNLVVAERMR--ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLAAKT 297 (1206)
Q Consensus 230 -iTtr~~~~~~~~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 297 (1206)
.|++...+..... ......+++.+.++..+++.+.+..... ....+.+..|+++++|.|-.+..
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~----~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV----EIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----CBCHHHHHHHHHTSTTCHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHhcCCChHHHHH
Confidence 3444333222111 1124789999999999999887632211 12346788999999999965443
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.78 E-value=0.00038 Score=79.65 Aligned_cols=190 Identities=14% Similarity=0.086 Sum_probs=103.0
Q ss_pred CCCccccchhHHHHHHHHHhcC----C--CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELLLND----N--LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~----~--~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.-.+++|.+..++.|.+++... . .......+.+.|+|++|+|||++|+.++... . ...++.++..
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~----~~~~~~v~~~--- 202 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--N----NSTFFSISSS--- 202 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC--C----SSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc--C----CCCEEEEeHH---
Confidence 3467999999999998877311 0 0001234688999999999999999999732 1 1122333322
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH-----------hhHHhhhccCCC---CCCCc
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY-----------IRWSELRCPFVA---GAAGS 226 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~~---~~~~~ 226 (1206)
++..... + ........+. ...-..++.+|+||+++.... .....+...+.. ...+.
T Consensus 203 -~l~~~~~----g--~~~~~~~~~f---~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 203 -DLVSKWL----G--ESEKLVKNLF---QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHH---HHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred -HHHhhhc----c--hHHHHHHHHH---HHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 1111110 1 0112222222 222235778999999975310 011222222221 23566
Q ss_pred EEEEEccchHH-Hhhc--CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHHHH
Q 045303 227 KIVVTTRNLVV-AERM--RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKTLG 299 (1206)
Q Consensus 227 ~iliTtr~~~~-~~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~ 299 (1206)
.||.||..... ...+ +....+.+...+.++..+++...+..... .........|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~----~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN----SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE----ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67777765421 1111 22246788888999999999887632211 11235567888899885 44555443
No 200
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.78 E-value=0.00026 Score=76.57 Aligned_cols=182 Identities=14% Similarity=0.106 Sum_probs=99.5
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
-.+++|.+..++++.+++..... -+-...+.+.|+|++|+|||++|+.++.. .... ++.+. .
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v~----~ 82 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISIK----G 82 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEEC----H
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEEE----h
Confidence 35699999999888887753100 00123467899999999999999999973 2221 22222 2
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHh--------------hHHhhhccCC--CCCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYI--------------RWSELRCPFV--AGAA 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~--------------~~~~l~~~l~--~~~~ 224 (1206)
.++..... +. ....+...+.......+.++++|+++..... ....+...+. ....
T Consensus 83 ~~l~~~~~----g~-----~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 83 PELLTMWF----GE-----SEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHHHHHHH----TT-----CTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHHHhhhc----Cc-----hHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 23332221 11 1122233333333457899999999642110 0122222221 1234
Q ss_pred CcEEEEEccchH-HHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcchH
Q 045303 225 GSKIVVTTRNLV-VAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPLA 294 (1206)
Q Consensus 225 ~~~iliTtr~~~-~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 294 (1206)
+..||.||.... +...+ .-...+.+...+.++-.+++......... ..... ...+++.+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 567777776543 21211 12246889999999999998876633211 11111 23466667776643
No 201
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.74 E-value=0.0002 Score=80.79 Aligned_cols=189 Identities=14% Similarity=0.075 Sum_probs=99.7
Q ss_pred CCCccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.-.+++|++..++.+.+++..... ......+.+.|+|++|+|||++|+.++.. ....| +.+.++.-..
T Consensus 113 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~- 186 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTS- 186 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC---
T ss_pred ChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhc-
Confidence 345799999999999888732100 00113468899999999999999999863 22211 2222211110
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC-----------HhhHHhhhccC---CC-CCCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN-----------YIRWSELRCPF---VA-GAAG 225 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------~~~~~~l~~~l---~~-~~~~ 225 (1206)
.. .......+...+...-...+.+|+||+++... ......+...+ .. ....
T Consensus 187 -~~-------------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 252 (389)
T 3vfd_A 187 -KY-------------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDR 252 (389)
T ss_dssp -------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -cc-------------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCC
Confidence 00 00111112222222223456799999996431 00111111111 11 1234
Q ss_pred cEEEEEccchH-HHhhc--CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcch-HHHHHH
Q 045303 226 SKIVVTTRNLV-VAERM--RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLPL-AAKTLG 299 (1206)
Q Consensus 226 ~~iliTtr~~~-~~~~~--~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 299 (1206)
..||.||.... +...+ +....+.+...+.++..+++...+..... ....+....+++.+.|..- +|..+.
T Consensus 253 v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 253 VLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS----PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC----CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666665432 11111 12246788999999999999877643221 1123567788888888654 555544
No 202
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.73 E-value=0.0023 Score=72.20 Aligned_cols=106 Identities=19% Similarity=0.043 Sum_probs=67.2
Q ss_pred ccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCCCC--CCCC
Q 045303 987 AGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFPED--GFPT 1064 (1206)
Q Consensus 987 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--~~~~ 1064 (1206)
..+..+.+|+.+.+..+ ........+.++.+|+.+.+..+ +...-...|.++.+|+.+.+..+ +. .++.. ..+.
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~ 286 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCS 286 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccc
Confidence 34555667777777554 33333445667777888777654 33334556777778888777654 22 23322 5667
Q ss_pred CcCeEEEeCcCCCCCCCccCCCCCCCcceEEee
Q 045303 1065 NLQSLEVRGLKISKPLPEWGFNRFTSLRRFTIC 1097 (1206)
Q Consensus 1065 ~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls 1097 (1206)
+|+.+.+.++.++ .++...|.++++|+.+.|.
T Consensus 287 ~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 287 NLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCCEEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred ccccccccccccc-eehhhhhcCCCCCCEEEcC
Confidence 7888888777665 4555578888888888773
No 203
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.72 E-value=0.00015 Score=77.85 Aligned_cols=149 Identities=9% Similarity=-0.001 Sum_probs=89.8
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcc-cccccceeEEEEEcC-CCChHHHHHHHHHh
Q 045303 93 GREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDR-VQRHFQIKGWTCVSD-DFDVPRVTKSILES 170 (1206)
Q Consensus 93 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~-~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~ 170 (1206)
|.++.++.|...+... +.+...++|++|+|||++|+.+++... .........++..+. ...+.+ .+++.+.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHH
Confidence 4566777787777542 257899999999999999999976310 111112233333221 111111 2223332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch-HHHhhcCCCCceeC
Q 045303 171 IANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL-VVAERMRADPVYQL 249 (1206)
Q Consensus 171 l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~-~~~~~~~~~~~~~l 249 (1206)
+.... ..+++-++|+|+++..+......+...+-...+.+.+|++|..+ .+...+..- .+++
T Consensus 74 ~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 74 LNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp HTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred Hhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 21110 12456699999998877666676766665555677777776543 333333344 8999
Q ss_pred CCCChhhHHHHHHHhh
Q 045303 250 KKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 250 ~~l~~~e~~~l~~~~~ 265 (1206)
.++++++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.71 E-value=4.5e-05 Score=95.58 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=80.1
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc---cccc-c-eeEEEEEcCCCChHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV---QRHF-Q-IKGWTCVSDDFDVPR 162 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~---~~~f-~-~~~wv~~~~~~~~~~ 162 (1206)
-.+++||++++.++.+.+.... ..-+.|+|++|+|||++|+.++..... .... . .++++.++.-
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l----- 237 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL----- 237 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred CcccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh-----
Confidence 4569999999999999996532 235689999999999999999873210 0001 1 1222322111
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHh-C-CCceEEEEeCCCccCHh-----hHHh--hhccCCCCCCCcEEEEEcc
Q 045303 163 VTKSILESIANVTVDDNNLNSLQVKLKERL-S-GKKFLLVLDDVWNENYI-----RWSE--LRCPFVAGAAGSKIVVTTR 233 (1206)
Q Consensus 163 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~~~-----~~~~--l~~~l~~~~~~~~iliTtr 233 (1206)
.. +. ............+...+ . +++.+|++|+++..... .++. +..++... .+..+|.+|.
T Consensus 238 -~~-------g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~ 307 (854)
T 1qvr_A 238 -LA-------GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATT 307 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEEC
T ss_pred -hc-------cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecC
Confidence 00 00 00112222222222222 2 46789999999653200 0111 11122222 2344555554
Q ss_pred chHH-----Hhh-cCCCCceeCCCCChhhHHHHHHHhh
Q 045303 234 NLVV-----AER-MRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 234 ~~~~-----~~~-~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.... ... ......+.+++++.++..+++....
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 4332 111 1223468999999999999987543
No 205
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.71 E-value=2.2e-05 Score=74.22 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=34.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-.++|++..++++.+.+..... ...-|.|+|.+|+|||++|+.+++.
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred cCceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 3589999999999888764321 2234789999999999999998873
No 206
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.66 E-value=0.00018 Score=78.67 Aligned_cols=122 Identities=11% Similarity=0.116 Sum_probs=65.4
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
..++|.+..++.+...+..... ........+.|+|++|+|||++|+.++.. ....-...+.+.++...... ...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHH
Confidence 3588999999999888865311 01123468999999999999999999873 21111223444444332221 122
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhc
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRC 217 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~ 217 (1206)
.+...... .........+...+. ....-+++||+++.........+..
T Consensus 94 ~l~g~~~~-~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~ 141 (311)
T 4fcw_A 94 RLIGAPPG-YVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQ 141 (311)
T ss_dssp HHHCCCTT-STTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHH
T ss_pred HhcCCCCc-cccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHH
Confidence 22211100 000111112222222 2344699999998766544444443
No 207
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.66 E-value=8.9e-05 Score=73.43 Aligned_cols=121 Identities=17% Similarity=0.117 Sum_probs=62.3
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccC
Q 045303 94 REKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIAN 173 (1206)
Q Consensus 94 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 173 (1206)
+++.++.+.+++..-.. .....++|+|++|+||||||+.++........+ .+.++. ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHHHHHHHHhcC
Confidence 44555555555543321 234689999999999999999998732111111 223332 33444444433321
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHH--hhhccCCCC-CCCcEEEEEccc
Q 045303 174 VTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWS--ELRCPFVAG-AAGSKIVVTTRN 234 (1206)
Q Consensus 174 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~--~l~~~l~~~-~~~~~iliTtr~ 234 (1206)
... ...... +. +.-+|||||++......|. .+...+... ..+..+|+||..
T Consensus 89 ~~~-----~~~~~~----~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD-----TKFLKT----VL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC-----SHHHHH----HH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH-----HHHHHH----hc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 122222 22 4568999999743222332 222211111 246788888865
No 208
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.65 E-value=2.2e-05 Score=75.32 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=40.7
Q ss_pred CCccEEEeccccCccccccccCCCCccCeeeeecCCCCccCC--CCCC----CCCcCeEEEeCcC-CCCCCCccCCCCCC
Q 045303 1017 TKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSVVSFP--EDGF----PTNLQSLEVRGLK-ISKPLPEWGFNRFT 1089 (1206)
Q Consensus 1017 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~--~~~~----~~~L~~L~Ls~n~-l~~~~p~~~~~~l~ 1089 (1206)
.+|++|++++|.++..--..+.++++|++|+|++|...+... .... .++|++|+|++|. ++..-- ..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 345555555555443333334555566666666664332210 0011 2346666666653 331100 1244566
Q ss_pred CcceEEeecCCCCce
Q 045303 1090 SLRRFTICGGCPDLV 1104 (1206)
Q Consensus 1090 ~L~~L~ls~~~~~l~ 1104 (1206)
+|++|++++ |+.++
T Consensus 140 ~L~~L~L~~-c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSD-LPGVK 153 (176)
T ss_dssp TCCEEEEES-CTTCC
T ss_pred CCCEEECCC-CCCCC
Confidence 666666665 55544
No 209
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.64 E-value=0.00025 Score=81.50 Aligned_cols=185 Identities=17% Similarity=0.091 Sum_probs=100.4
Q ss_pred CccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 89 PKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
.+++|.+..++++.+++..... -+....+-|.|+|++|+|||++|+.++.. ....| +.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 4689999999999887753200 00123457899999999999999999873 22222 222211
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH-----------hhHHhhhccCC--CCCCCcEE
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY-----------IRWSELRCPFV--AGAAGSKI 228 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-----------~~~~~l~~~l~--~~~~~~~i 228 (1206)
++...+. ..........+.....+++.+|+||+++.... .....+...+. ....+.+|
T Consensus 273 ----~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111111 11112233334444456788999999942110 01111222221 12345566
Q ss_pred EEEccchH-HHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc-chHHHHH
Q 045303 229 VVTTRNLV-VAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL-PLAAKTL 298 (1206)
Q Consensus 229 liTtr~~~-~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 298 (1206)
|.||.... +...+ .-...+.+...+.++-.+++...+..... ... ....++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~----~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADD----VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTT----CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cch----hhHHHHHHHccCCcHHHHHHH
Confidence 66776542 22222 22246889999999999999887632211 111 1235567777765 4444443
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00083 Score=73.62 Aligned_cols=179 Identities=17% Similarity=0.054 Sum_probs=97.6
Q ss_pred CccccchhHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 89 PKVYGREKEKEKIIELLLNDN-------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
.++.|-++..++|.+.+.-+- .-+-..++-|.++|++|+|||.+|++++.. ....| +.+..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 567899988888876653210 001234567899999999999999999973 22222 2222221100
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC--------H--hh----HHhhhccCC--CCCCC
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN--------Y--IR----WSELRCPFV--AGAAG 225 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------~--~~----~~~l~~~l~--~~~~~ 225 (1206)
.........+...+...-...+++|++|+++... . .. ...+...+- ....+
T Consensus 221 -------------k~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 -------------KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp -------------SSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred -------------cccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 0001111222222223334678999999996421 0 01 111222221 12345
Q ss_pred cEEEEEccchHH-----HhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 226 SKIVVTTRNLVV-----AERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 226 ~~iliTtr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
..||.||..... .+.-+-+..+.++..+.++-.++|+.+...... .... ....+++.+.|+-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dv----dl~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGI----NLRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSC----CHHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccC----CHHHHHHHCCCCC
Confidence 566777765432 222234567899999999999999877532211 1111 1456777887754
No 211
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.64 E-value=3.6e-05 Score=80.18 Aligned_cols=83 Identities=17% Similarity=0.299 Sum_probs=55.4
Q ss_pred HHHhccCCceeEEEecCCCCcccC---CccccCccccceeeccccccccccccccccc--cccEEecCCCccccccc---
Q 045303 493 KMLLNHLPRLRVFSLCGYSNIFSL---PNEIGNLKHLRCLNLSRTRIQILPESINSLY--NLHTILLEDCWKLKKLC--- 564 (1206)
Q Consensus 493 ~~~~~~~~~L~~L~L~~~~~~~~l---p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~L~--~L~~L~L~~n~~~~~lp--- 564 (1206)
+.....+++|++|+|++| .+..+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|
T Consensus 163 ~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred HHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcch
Confidence 333466788888888888 55544 35566788888888888888766 2344444 78888888875444443
Q ss_pred ----ccccCCCccceee
Q 045303 565 ----KDMGNLTKLRHLR 577 (1206)
Q Consensus 565 ----~~~~~L~~L~~L~ 577 (1206)
..+..+++|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 1256677777765
No 212
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.64 E-value=0.005 Score=69.31 Aligned_cols=124 Identities=13% Similarity=0.010 Sum_probs=83.9
Q ss_pred CCcceeeeccccCcCcccccccCCCccceeeccccCCcccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeee
Q 045303 969 TSLEEITILNLENLKSLPAGLHNLHHLQKIWIGYCPNLESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDI 1048 (1206)
Q Consensus 969 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 1048 (1206)
.+|+.+.+..+ ....-...|.++..|+.+.+..+ ....-...+.++.+|+.+.+..+ +...-...|.++++|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 45555555432 22222445677888888888765 44444556778888999888643 44444567888999999999
Q ss_pred ecCCCCccCCCC-CCCCCcCeEEEeCcCCCCCCCccCCCCCCCcceEEee
Q 045303 1049 RGCPSVVSFPED-GFPTNLQSLEVRGLKISKPLPEWGFNRFTSLRRFTIC 1097 (1206)
Q Consensus 1049 ~~n~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~p~~~~~~l~~L~~L~ls 1097 (1206)
.++.+...-... ..+.+|+.+.|..+ ++ .+....|.++++|+.+.+.
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEEC
Confidence 877655433322 66788999998765 33 5666689999999988874
No 213
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.58 E-value=8.9e-06 Score=84.80 Aligned_cols=81 Identities=23% Similarity=0.278 Sum_probs=61.6
Q ss_pred cCccccceeecccccccccc---ccccccccccEEecCCCcccccccccccCCC--ccceeecCCCCccccCCc------
Q 045303 521 GNLKHLRCLNLSRTRIQILP---ESINSLYNLHTILLEDCWKLKKLCKDMGNLT--KLRHLRNSNADELEEMPK------ 589 (1206)
Q Consensus 521 ~~l~~L~~L~Ls~n~i~~lp---~~~~~L~~L~~L~L~~n~~~~~lp~~~~~L~--~L~~L~l~~n~~~~~~p~------ 589 (1206)
.++++|++|+|++|.|+.++ ..+..+++|++|+|++| .+..+ ..+..+. +|++|+|++|.+...+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 46889999999999998654 56778999999999999 55555 3355555 999999999996555652
Q ss_pred -ccCCcCccccCCce
Q 045303 590 -GFGKLTCLLTLGRF 603 (1206)
Q Consensus 590 -~~~~l~~L~~L~~~ 603 (1206)
.+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 25667777777543
No 214
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.54 E-value=5.8e-05 Score=76.53 Aligned_cols=126 Identities=18% Similarity=0.204 Sum_probs=64.2
Q ss_pred Cccccch----hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHH
Q 045303 89 PKVYGRE----KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 89 ~~~vGr~----~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
..|++.+ ..++.+.+++..... ....+.+.|+|++|+|||+||+.++.. .......++|+.+ .++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~------~~~~ 94 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYV------PELF 94 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEH------HHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEh------HHHH
Confidence 4566544 345555666654321 112268899999999999999999873 2222234455543 2444
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHh--hhccCCC-C-CCCcEEEEEccc
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSE--LRCPFVA-G-AAGSKIVVTTRN 234 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~--l~~~l~~-~-~~~~~iliTtr~ 234 (1206)
..+...... .........+.+ .-+|||||++......|.. +...+.. . ..+.++|+||..
T Consensus 95 ~~~~~~~~~-----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 95 RELKHSLQD-----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHC--------CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhcc-----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 444433221 112333333322 2399999996543323221 1111111 1 235578888875
No 215
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0012 Score=73.64 Aligned_cols=181 Identities=15% Similarity=0.095 Sum_probs=98.5
Q ss_pred CCCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
.-.++.|-++.+++|.+.+.-+-. -+-..++-|.++|++|+|||++|++++.. ....| +.+..+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc
Confidence 345688999988888776642100 01234678999999999999999999973 22222 2222221110
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC----------Hh----hHHhhhccCC--CCC
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN----------YI----RWSELRCPFV--AGA 223 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~----~~~~l~~~l~--~~~ 223 (1206)
.........+...+...-...+++|++|+++... .. ....+...+- ...
T Consensus 254 ---------------k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 ---------------KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp ---------------SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred ---------------ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0001111122222233334678999999996421 00 1112222221 223
Q ss_pred CCcEEEEEccchHHH-hhc-C---CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 224 AGSKIVVTTRNLVVA-ERM-R---ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 224 ~~~~iliTtr~~~~~-~~~-~---~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
.+..||.||...... ..+ + -...+.++..+.++-.++|+.+...... ....+ ...+++.+.|+-
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 456777777654322 221 1 2346788888888888888877643221 11111 356777787754
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.52 E-value=0.00015 Score=77.18 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=34.5
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 4589999999998887765321 2246789999999999999999874
No 217
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.51 E-value=0.00015 Score=78.33 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=37.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|++..+.++.+.+..... ....|.|+|.+|+|||++|+.+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHH
Confidence 3589999999999988865322 234678999999999999999986
No 218
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=2.9e-05 Score=77.17 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=41.8
Q ss_pred HHHHhccCCceeEEEecCCCCcc-----cCCccccCccccceeecccccccc-----ccccccccccccEEecCCCcccc
Q 045303 492 LKMLLNHLPRLRVFSLCGYSNIF-----SLPNEIGNLKHLRCLNLSRTRIQI-----LPESINSLYNLHTILLEDCWKLK 561 (1206)
Q Consensus 492 ~~~~~~~~~~L~~L~L~~~~~~~-----~lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~~~~L~~L~~L~L~~n~~~~ 561 (1206)
+...+...+.|++|+|++|..+. .+...+...++|++|+|++|.|.. +...+...++|++|+|++|. ++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 33445555555555555541221 122334444555555555555541 23334444555555555552 22
Q ss_pred c-----ccccccCCCccceeec--CCCC
Q 045303 562 K-----LCKDMGNLTKLRHLRN--SNAD 582 (1206)
Q Consensus 562 ~-----lp~~~~~L~~L~~L~l--~~n~ 582 (1206)
. +...+...++|++|+| ++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~ 134 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQP 134 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCC
Confidence 1 2334444555555555 4444
No 219
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.50 E-value=2.8e-05 Score=74.69 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=29.2
Q ss_pred ccCCCccceeeccccCCcccc-cCCCCC----CCCccEEEeccccC-ccccccccCCCCccCeeeeecCCC
Q 045303 989 LHNLHHLQKIWIGYCPNLESF-PEEGLP----STKLTELTIWDCEN-LKALPNCMHNLTSLLDLDIRGCPS 1053 (1206)
Q Consensus 989 ~~~l~~L~~L~L~~n~~~~~~-~~~~~~----l~~L~~L~L~~n~~-~~~~p~~~~~l~~L~~L~L~~n~~ 1053 (1206)
+.++++|++|+|++|..++.. -..+.. +++|++|+|++|.. +..--..+..+++|++|+|++|+.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTT
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCC
Confidence 345556666666666433211 011111 13455666655542 221122344555555555555543
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.49 E-value=0.00048 Score=75.31 Aligned_cols=50 Identities=26% Similarity=0.275 Sum_probs=37.4
Q ss_pred CccccchhHHHHHHHHHhcCCCC--------CCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNLR--------ADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~--------~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|++..++.+...+...... .......+.|+|++|+|||++|+.+++
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999998887541000 001245688999999999999999987
No 221
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.48 E-value=0.00024 Score=87.95 Aligned_cols=150 Identities=19% Similarity=0.122 Sum_probs=80.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc---ccccceeEEEEEcCCCChHHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV---QRHFQIKGWTCVSDDFDVPRVT 164 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~---~~~f~~~~wv~~~~~~~~~~~~ 164 (1206)
-.++|||+++++++...+.... ..-+.++|++|+|||++|+.+++.... .......-++.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------
Confidence 3569999999999999997532 234789999999999999999873100 00001111111111
Q ss_pred HHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHHH------
Q 045303 165 KSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVVA------ 238 (1206)
Q Consensus 165 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~~------ 238 (1206)
.....+ ........ .+......++.+|++|.. . .....+.. ... ....++|.||......
T Consensus 245 ---g~~~~G--~~e~~l~~---~~~~~~~~~~~iLfiD~~--~--~~~~~L~~-~l~-~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYRG--EFEDRLKK---VMDEIRQAGNIILFIDAA--I--DASNILKP-SLA-RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTTHHH---HHHHHHTCCCCEEEECC------------CC-CTT-SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---cccccc--hHHHHHHH---HHHHHHhcCCEEEEEcCc--h--hHHHHHHH-HHh-cCCEEEEeCCChHHHHHHhhcc
Confidence 000000 01112222 233333467889999921 1 11112222 222 2345677666654411
Q ss_pred hh-cCCCCceeCCCCChhhHHHHHHHhh
Q 045303 239 ER-MRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 239 ~~-~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.. ......+.++..+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 10 1122468999999999999998654
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=0.0012 Score=69.53 Aligned_cols=185 Identities=14% Similarity=0.067 Sum_probs=94.0
Q ss_pred CCCccccchhHHHHHHHHHhc---CCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELLLN---DNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.-.+++|.+..++++.+.+.. ... .+....+-+.|+|++|+|||++|+.++.. ....| +.+..+.-.+
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~- 83 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE- 83 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT-
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH-
Confidence 345799999888777665432 110 00112345889999999999999999873 22122 2222111100
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH--------------hhHHhhhccCC--CCCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY--------------IRWSELRCPFV--AGAA 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------------~~~~~l~~~l~--~~~~ 224 (1206)
.. .......+...+.......+.++++|+++.... .....+...+. ....
T Consensus 84 ---------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 ---------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp ---------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred ---------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 111223333334444455678999999843110 01111211111 1224
Q ss_pred CcEEEEEccchH-HHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCC-cchHHH
Q 045303 225 GSKIVVTTRNLV-VAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGG-LPLAAK 296 (1206)
Q Consensus 225 ~~~iliTtr~~~-~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~ 296 (1206)
+..||.||.... +.... .-...+.+...+.++-.+++........ ..++ .....++..+.| .+--|.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~---l~~~--~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP---LAPD--IDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---BCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC---CCcc--ccHHHHHHHcCCCCHHHHH
Confidence 556777776543 21211 1234677888888888888877653211 1111 113446667777 554444
No 223
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.47 E-value=0.00084 Score=83.27 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=88.6
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCccc---ccc-cceeEEEEEcCCCChHHH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV---QRH-FQIKGWTCVSDDFDVPRV 163 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~---~~~-f~~~~wv~~~~~~~~~~~ 163 (1206)
..+++||+.+++++.+.+... ...-+.|+|++|+|||++|+.++..... ... ....+|. ..- ..+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~~----~~l 253 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LDI----GSL 253 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CCC----C--
T ss_pred CCCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-EcH----HHH
Confidence 356899999999999999643 2345789999999999999999863210 000 1222221 110 000
Q ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHh-CCCceEEEEeCCCcc--------CHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 164 TKSILESIANVTVDDNNLNSLQVKLKERL-SGKKFLLVLDDVWNE--------NYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 164 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~--------~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
+.+. ......+.....+.+.+ ..++.+|++|+++.. ...+...+...+... .+.++|.+|..
T Consensus 254 -------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_dssp --------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECH
T ss_pred -------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCc
Confidence 0000 11122333333333333 345789999999754 122222333334333 34566666655
Q ss_pred hHHHhhc-------CCCCceeCCCCChhhHHHHHHHhh
Q 045303 235 LVVAERM-------RADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 235 ~~~~~~~-------~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
....... .....+.+.+.+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 4432111 122368899999999999887654
No 224
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0013 Score=73.47 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=91.9
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
-.++.|-++..++|.+.+.-.-. -+-..++-+.++|++|+|||++|++++.. ....| +.+..+.-.+
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~--~~~~~---~~v~~~~l~~- 244 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS--TKAAF---IRVNGSEFVH- 244 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH--HTCEE---EEEEGGGTCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCCe---EEEecchhhc-
Confidence 35788999998888776642100 01234567899999999999999999973 22222 2222222110
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC----------Hh----hHHhhhccCC--CCCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN----------YI----RWSELRCPFV--AGAA 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~----~~~~l~~~l~--~~~~ 224 (1206)
.........+...+...-...++++++|+++... .. ....+...+- ....
T Consensus 245 --------------~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~ 310 (428)
T 4b4t_K 245 --------------KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST 310 (428)
T ss_dssp --------------SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC
T ss_pred --------------cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC
Confidence 0001111222222333334678999999985210 00 0111221111 1234
Q ss_pred CcEEEEEccchH-HHhhc----CCCCceeCCCC-ChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 225 GSKIVVTTRNLV-VAERM----RADPVYQLKKL-SDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 225 ~~~iliTtr~~~-~~~~~----~~~~~~~l~~l-~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
+..||.||.... +...+ +-...+.+..+ +.++-.++|+.+..... .....+ ...+++.+.|+-
T Consensus 311 ~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~-l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 311 NVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS-LAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp SEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC-BCTTCC----HHHHHHHTTTCC
T ss_pred CEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHHCCCCC
Confidence 566777776542 11111 22345777655 45555566666553221 111111 456777777753
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.44 E-value=9.3e-05 Score=78.97 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=81.3
Q ss_pred CCCccccchhHHHHHHHHHhcCCCC------CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNLR------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
...+++|.+..++++.+++..-... +....+-+.|+|++|+|||++|+.++.. ....|- .+..+.-.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~~---~v~~~~~~-- 81 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE--AHVPFF---SMGGSSFI-- 81 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH--HTCCCC---CCCSCTTT--
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCEE---EechHHHH--
Confidence 3457999998888887766420000 0011234789999999999999999873 222221 11111100
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHh---------------hHHhhhccCCC---C
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYI---------------RWSELRCPFVA---G 222 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~---------------~~~~l~~~l~~---~ 222 (1206)
..+.+.. ....... +......++.+|++|+++..... ....+...+.. .
T Consensus 82 --------~~~~~~~--~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (268)
T 2r62_A 82 --------EMFVGLG--ASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSE 148 (268)
T ss_dssp --------TSCSSSC--SSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCS
T ss_pred --------HhhcchH--HHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccC
Confidence 0011110 1111111 22222346789999999653211 11112222211 1
Q ss_pred CCCcEEEEEccchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhh
Q 045303 223 AAGSKIVVTTRNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 223 ~~~~~iliTtr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.....||.||...... ... .-...+.++..+.++..+++...+
T Consensus 149 ~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 149 NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 1235677777654321 111 123467888889898888887765
No 226
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.43 E-value=0.00065 Score=78.25 Aligned_cols=95 Identities=8% Similarity=-0.045 Sum_probs=57.1
Q ss_pred eEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEE---------cc----chHHH-hhcCCCCceeCCCCChhhHHHHHH
Q 045303 197 FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVT---------TR----NLVVA-ERMRADPVYQLKKLSDDDCLCVLT 262 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliT---------tr----~~~~~-~~~~~~~~~~l~~l~~~e~~~l~~ 262 (1206)
-++++|+++..+......+...+.......-|+.| |. ...+. ........+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 38999999888777777776666554444323344 32 11111 111222357999999999999998
Q ss_pred HhhhCCCCCCCChhhHHHHHHHHHhc-CCcchHH
Q 045303 263 QISLGARDFTRHQSLKEVGEQIVIKC-GGLPLAA 295 (1206)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal 295 (1206)
..+...+. . -..+.+..|++.+ +|.|-..
T Consensus 377 ~~~~~~~~-~---~~~~~~~~i~~~a~~g~~r~a 406 (456)
T 2c9o_A 377 IRAQTEGI-N---ISEEALNHLGEIGTKTTLRYS 406 (456)
T ss_dssp HHHHHHTC-C---BCHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHhCC-C---CCHHHHHHHHHHccCCCHHHH
Confidence 77532111 1 1235667788887 7777543
No 227
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.39 E-value=0.00014 Score=72.12 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=83.9
Q ss_pred ccCCCCceEecccCCcccccchhhHHHHHHHhccCCceeEEEecCCCCccc-----CCccccCccccceeecccccccc-
Q 045303 465 VSDVERLRTFLPVNLSDYRHNYLAWSVLKMLLNHLPRLRVFSLCGYSNIFS-----LPNEIGNLKHLRCLNLSRTRIQI- 538 (1206)
Q Consensus 465 ~~~~~~lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~Ls~n~i~~- 538 (1206)
+...+.++.|.+.+.. .........+...+...+.|++|+|++| .+.. +...+...+.|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~--~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIM--NIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCT--TCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCC--CCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 4456778888766531 1112234456677888999999999999 5543 34556667899999999999873
Q ss_pred ----ccccccccccccEEec--CCCccccc----ccccccCCCccceeecCCCC
Q 045303 539 ----LPESINSLYNLHTILL--EDCWKLKK----LCKDMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 539 ----lp~~~~~L~~L~~L~L--~~n~~~~~----lp~~~~~L~~L~~L~l~~n~ 582 (1206)
+...+...+.|++|+| ++|..... +...+...++|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5667888899999999 77843322 44556677999999999998
No 228
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.00068 Score=75.29 Aligned_cols=180 Identities=17% Similarity=0.062 Sum_probs=96.7
Q ss_pred CCccccchhHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLN----DN---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
-.++.|-++..++|.+.+.- .. .-+-..++-|.++|++|+|||.+|++++.. ....| +.+..+.-
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L--- 279 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSEL--- 279 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG---
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHh---
Confidence 35688999988888775421 00 001235678899999999999999999973 22222 22222211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH----------h----hHHhhhccCC--CCCC
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY----------I----RWSELRCPFV--AGAA 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------~----~~~~l~~~l~--~~~~ 224 (1206)
.. .........+...+...-...+++|++|+++.... . ....+...+- ....
T Consensus 280 -----------~s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 280 -----------VQ-KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CC-CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------hc-ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 00 00011112222223333356789999999964210 0 0111121121 1234
Q ss_pred CcEEEEEccchHH-----HhhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 225 GSKIVVTTRNLVV-----AERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 225 ~~~iliTtr~~~~-----~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
+..||.||-.... .+.-+-...+.+...+.++-.++|+.+..... ...... ...|++.+.|+-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 5566777755332 11113346788888899999999987763221 111111 355777787753
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.32 E-value=0.00032 Score=86.88 Aligned_cols=156 Identities=13% Similarity=0.139 Sum_probs=86.4
Q ss_pred CccccchhHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLR---ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTK 165 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 165 (1206)
..++|.+..++.+...+...... .......+.++|++|+|||++|+.+++. ....-...+.+.++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhccccc----
Confidence 46899999999998888753310 1122347999999999999999999873 21111223344443221100
Q ss_pred HHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhhHHhhhccCCC-----------CCCCcEEEEEccc
Q 045303 166 SILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIRWSELRCPFVA-----------GAAGSKIVVTTRN 234 (1206)
Q Consensus 166 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~~l~~~l~~-----------~~~~~~iliTtr~ 234 (1206)
......+...++. ....+|+||+++.........+...+.. ...+.+||+||..
T Consensus 565 ------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 565 ------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 0001111122221 3345899999987765444444433222 1245688888872
Q ss_pred h-----H----HHhhc------CCCCceeCCCCChhhHHHHHHHhh
Q 045303 235 L-----V----VAERM------RADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 235 ~-----~----~~~~~------~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
. . +...+ +-...+.+.++++++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 01111 112478889999988887776643
No 230
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.24 E-value=0.0019 Score=73.37 Aligned_cols=180 Identities=15% Similarity=0.065 Sum_probs=96.1
Q ss_pred CCccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChH
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVP 161 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 161 (1206)
-.+++|.++.++++.+....-.. -+..-++-+.|+|++|+|||++|+.++.. ....| +.+..+.-..
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~-- 87 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVE-- 87 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTT--
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHH--
Confidence 45799999887777766532110 00112345889999999999999999873 22222 2222221111
Q ss_pred HHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH--------------hhHHhhhccCC--CCCCC
Q 045303 162 RVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY--------------IRWSELRCPFV--AGAAG 225 (1206)
Q Consensus 162 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------------~~~~~l~~~l~--~~~~~ 225 (1206)
.+. ..........+.......+.+|+||+++.... .....+...+. ....+
T Consensus 88 --------~~~-----g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 88 --------LFV-----GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------CCT-----THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------HHh-----cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 000 00112222334444456789999999965211 01112222111 11245
Q ss_pred cEEEEEccchHHHh-hc-C---CCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 226 SKIVVTTRNLVVAE-RM-R---ADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 226 ~~iliTtr~~~~~~-~~-~---~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
..||.||....... .. . -...+.+...+.++-.+++..++.... ..++. ....+++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~---l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP---LAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---BCTTC--CHHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC---Ccchh--hHHHHHHhcCCCc
Confidence 66777776654321 11 1 223678888888888888877653221 11111 1345788888877
No 231
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00055 Score=76.39 Aligned_cols=180 Identities=14% Similarity=0.089 Sum_probs=95.3
Q ss_pred CCCccccchhHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 87 TEPKVYGREKEKEKIIELLLN----DN---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
.-.++.|-++..++|.+.+.- +. ..+-..++-|.++|+||+|||.+|++++.. ....| +.+..+.-
T Consensus 179 t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l-- 251 (434)
T 4b4t_M 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQL-- 251 (434)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGG--
T ss_pred ChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhh--
Confidence 346688999998888776422 11 001234678899999999999999999973 22222 22222111
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCcc-------CH---hh----HHhhhccCCC--CC
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNE-------NY---IR----WSELRCPFVA--GA 223 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------~~---~~----~~~l~~~l~~--~~ 223 (1206)
... ........+...+...-...+++|++|+++.. .. .. ...+...+-. ..
T Consensus 252 ------------~~~-~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~ 318 (434)
T 4b4t_M 252 ------------VQM-YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD 318 (434)
T ss_dssp ------------CSS-CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS
T ss_pred ------------hhc-ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC
Confidence 000 00111111122222222456899999998531 00 01 1112222221 22
Q ss_pred CCcEEEEEccchHH-Hhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCc
Q 045303 224 AGSKIVVTTRNLVV-AERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGL 291 (1206)
Q Consensus 224 ~~~~iliTtr~~~~-~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 291 (1206)
.+..||.||..... ...+ +-...+.++..+.++-.++|+.+...... ...-. ...|++.+.|+
T Consensus 319 ~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 319 DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 45567777766432 2222 22356888888999888888766532211 11111 45677778775
No 232
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.13 E-value=0.00019 Score=67.86 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...++|+|+.|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 233
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.04 E-value=0.0031 Score=67.61 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++.+.++|++|+|||++|+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999999999973
No 234
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.0015 Score=71.68 Aligned_cols=181 Identities=15% Similarity=0.085 Sum_probs=95.8
Q ss_pred CCCccccchhHHHHHHHHHhcC----C---CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 87 TEPKVYGREKEKEKIIELLLND----N---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
.-.++.|-++..++|.+.+.-. . ..+-..++-|.++|++|+|||.+|++++.. ....| +.+..+.
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~--- 251 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSE--- 251 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGG---
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHH---
Confidence 3456889999888887765321 0 001234578999999999999999999973 22222 1222211
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH--------------hhHHhhhccCC--CCC
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY--------------IRWSELRCPFV--AGA 223 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------------~~~~~l~~~l~--~~~ 223 (1206)
+.. .........+...+...-...+++|++|+++.... .....+...+- ...
T Consensus 252 -----------l~s-k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 252 -----------LIQ-KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp -----------GCC-SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred -----------hhh-ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 100 00011111122222223346789999999863210 01111221111 123
Q ss_pred CCcEEEEEccchHHH-hhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 224 AGSKIVVTTRNLVVA-ERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 224 ~~~~iliTtr~~~~~-~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
.+..||.||-..... ..+ +-+..+.+...+.++-.++|+.+..... .....+ ...|++.+.|+-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCCC
Confidence 455677777654332 222 1234578888888888889987663221 111111 456777777753
No 235
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.93 E-value=0.0028 Score=69.78 Aligned_cols=152 Identities=15% Similarity=0.123 Sum_probs=83.1
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
..++|+++.++.+...+... .-+.++|++|+|||++|+.+++. ....| ..+.+.......++ .
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l----~ 89 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDL----I 89 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHH----H
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhc----C
Confidence 46899999999998888653 25889999999999999999873 22222 22222222222222 1
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCC--CceEEEEeCCCccCHhhHHhhhccCCC-----------CCCCcEEEEEccch
Q 045303 169 ESIANVTVDDNNLNSLQVKLKERLSG--KKFLLVLDDVWNENYIRWSELRCPFVA-----------GAAGSKIVVTTRNL 235 (1206)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~~~~~~l~~~l~~-----------~~~~~~iliTtr~~ 235 (1206)
....... ..... ..-.+ ...++++|+++.........+...+.. ......|+.|+...
T Consensus 90 g~~~~~~-~~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 90 GTMIYNQ-HKGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp EEEEEET-TTTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred CceeecC-CCCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 1110000 00000 00001 135899999987654433333322211 12345566566522
Q ss_pred H------HHhh-cCCCC-ceeCCCCChhhHHHHHHHhhh
Q 045303 236 V------VAER-MRADP-VYQLKKLSDDDCLCVLTQISL 266 (1206)
Q Consensus 236 ~------~~~~-~~~~~-~~~l~~l~~~e~~~l~~~~~~ 266 (1206)
. +... ..... .+.+.+.+.++-.+++.....
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 1 1111 11222 488999999999999988764
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.90 E-value=0.0032 Score=75.95 Aligned_cols=180 Identities=16% Similarity=0.089 Sum_probs=98.5
Q ss_pred CCccccchhHHHHHHHHHhc----CC---CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLN----DN---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~----~~---~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
-.++.|-++.+++|.+++.- +. .-+...++-|.++|++|+|||+||++++.. ...+| +.+...
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~----- 272 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH-----
Confidence 35678888888887776532 11 011235678999999999999999999984 32222 222221
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH-------hh----HHhhhccCCC--CCCCcE
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY-------IR----WSELRCPFVA--GAAGSK 227 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------~~----~~~l~~~l~~--~~~~~~ 227 (1206)
++.... .......+...+.......+.+|+||+++.... .. ...+...+.. ...+..
T Consensus 273 -----~l~sk~-----~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 -----EIMSKL-----AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -----HHHSSC-----TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -----Hhhccc-----chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 111111 111222333334444467799999999964210 00 1111111111 123455
Q ss_pred EEEEccchH-HHhhc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 228 IVVTTRNLV-VAERM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 228 iliTtr~~~-~~~~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
||.||.... +...+ .-...+++...+.++-.++|..+...... ... .....|++++.|+-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~d----vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADD----VDLEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTT----CCHHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-Ccc----cCHHHHHHhcCCCC
Confidence 666665543 22222 22356889999999999999876532111 111 12456788888774
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.84 E-value=0.0031 Score=74.03 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=78.6
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
.+++|-+...+.+.+.+.-..........++.++|++|+||||+|+.++.. ....|. .+.++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~--l~~~~~---~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS--LGRKFV---RISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH--HTCEEE---EECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh--cCCCeE---EEEecccchhhhhhhHHH
Confidence 457888888777765543211001124568999999999999999999873 222221 122222112111111100
Q ss_pred HhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHhh----HHhhhccCCCC---------------CCCcEEE
Q 045303 169 ESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYIR----WSELRCPFVAG---------------AAGSKIV 229 (1206)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~----~~~l~~~l~~~---------------~~~~~il 229 (1206)
...+ .........+.. .....-++++|+++...... ...+...+-.. .....+|
T Consensus 156 ~~ig------~~~~~~~~~~~~-a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVG------AMPGRIIQGMKK-AGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHT-TCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhc------cCchHHHHHHHH-hhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 0010 001111112222 22233488899997654321 12233222111 0345677
Q ss_pred EEccchH-----HHhhcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 230 VTTRNLV-----VAERMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 230 iTtr~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.||.... +..++ ..+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 7766532 22222 368899999998888887654
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.81 E-value=0.0034 Score=78.56 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=38.4
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|.+..++.+...+..... ........+.|+|++|+|||++|+.++.
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~ 610 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA 610 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence 3579999999999888865321 0112346899999999999999999987
No 239
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.77 E-value=0.0027 Score=78.71 Aligned_cols=50 Identities=22% Similarity=0.304 Sum_probs=38.2
Q ss_pred CccccchhHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence 5689999999988887764221 0112345799999999999999999987
No 240
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.66 E-value=0.001 Score=71.68 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 95 EKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 95 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...++.+.+++..... ...+.+.|+|++|+|||+||+.+++.
T Consensus 134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445555566654321 12467899999999999999999873
No 241
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.63 E-value=0.0015 Score=68.92 Aligned_cols=70 Identities=16% Similarity=0.275 Sum_probs=46.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEE--cCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCV--SDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERL 192 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 192 (1206)
..+++.|+|++|+|||+||.+++.. .-..+.|++. ....+. ...+.+...+.+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHH
Confidence 3467889999999999999999863 1223556666 222110 0145566666666666
Q ss_pred CCCceEEEEeCCCc
Q 045303 193 SGKKFLLVLDDVWN 206 (1206)
Q Consensus 193 ~~~~~LlvlDdv~~ 206 (1206)
...+ +||+|++..
T Consensus 181 ~~~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQHR-VIVIDSLKN 193 (331)
T ss_dssp HHCS-EEEEECCTT
T ss_pred hhCC-EEEEecccc
Confidence 6666 999999954
No 242
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.56 E-value=0.013 Score=65.71 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=35.8
Q ss_pred CccccchhHHHHHHHHHh----cCCC--------------------CCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLL----NDNL--------------------RADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~----~~~~--------------------~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|.++.++.+..++. .... ........+.++|++|+|||++|+.+++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 357899999988887772 1000 0011234688999999999999999987
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.39 E-value=0.016 Score=60.69 Aligned_cols=53 Identities=30% Similarity=0.248 Sum_probs=34.0
Q ss_pred CCCccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNL------RADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.-.+++|.+....++.+....-.. -+-.-.+-+.|+|++|+||||||+.++..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 345788988776666554322100 00001123899999999999999999873
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.34 E-value=0.019 Score=65.68 Aligned_cols=178 Identities=15% Similarity=0.088 Sum_probs=92.0
Q ss_pred CCCCccccchhHHHHHHHHHhc---CCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 86 VTEPKVYGREKEKEKIIELLLN---DNL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 86 ~~~~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
....+++|.++.+.++.+.... ... -+..-.+-+.|+|++|+|||+||+.++... .. ..+.+..+.-.+
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~ 102 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE 102 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH
Confidence 3456799999887776665432 110 000112348999999999999999998732 21 122222221000
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC----CCceEEEEeCCCccC----------HhhH----HhhhccCCC
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERLS----GKKFLLVLDDVWNEN----------YIRW----SELRCPFVA 221 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~LlvlDdv~~~~----------~~~~----~~l~~~l~~ 221 (1206)
.........++..++ ..+.++++|+++... ...+ ..+...+..
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 000111222333332 235799999995321 1111 122222222
Q ss_pred C--CCCcEEEEEccchHHHh-hc----CCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 222 G--AAGSKIVVTTRNLVVAE-RM----RADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 222 ~--~~~~~iliTtr~~~~~~-~~----~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
. ..+..++.||..+.... .+ .-...+.+...+.++-.++++.++.... .... .....+++.+.|+.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~d----v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAED----VDLALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCS----STTHHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChH----HHHHHHHHhcCCCC
Confidence 1 23445666666654321 11 2235788898999988888876652211 1111 11345777777765
No 245
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.31 E-value=0.012 Score=60.05 Aligned_cols=85 Identities=20% Similarity=0.129 Sum_probs=49.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccC-----------CCC-CCCCHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIAN-----------VTV-DDNNLN 182 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~-----------~~~-~~~~~~ 182 (1206)
...++.|+|.+|+||||||..++. ..-..++|++.....+...+.. +.+..+. ... ...+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346999999999999999999986 1123567776655445544432 3332211 111 111122
Q ss_pred HHHHHHHHHhCCCceEEEEeCCC
Q 045303 183 SLQVKLKERLSGKKFLLVLDDVW 205 (1206)
Q Consensus 183 ~~~~~l~~~l~~~~~LlvlDdv~ 205 (1206)
+....++.....+.-++|+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 33444444444456788888874
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.30 E-value=0.041 Score=58.45 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=88.6
Q ss_pred CCCccccchhHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
...+++|.++..+++.+....-.. -+-.-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~--~---~~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT--T---CCEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc--C---CCEEEecHH-----
Confidence 345789998877776655432100 000011238999999999999999998732 2 112222211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccC----------HhhH----HhhhccCCCCC--C
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNEN----------YIRW----SELRCPFVAGA--A 224 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~~~~----~~l~~~l~~~~--~ 224 (1206)
+ +..... ......+...++..-...+.++++|+++... ...+ ..+...+..+. .
T Consensus 108 -~----~~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 -D----FVEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp -H----HHHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred -H----HHHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 1 111100 0001111122222223457899999994210 0111 12222222221 2
Q ss_pred CcEEEEEccchHHH-----hhcCCCCceeCCCCChhhHHHHHHHhhhCCCCCCCChhhHHHHHHHHHhcCCcc
Q 045303 225 GSKIVVTTRNLVVA-----ERMRADPVYQLKKLSDDDCLCVLTQISLGARDFTRHQSLKEVGEQIVIKCGGLP 292 (1206)
Q Consensus 225 ~~~iliTtr~~~~~-----~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 292 (1206)
...++.+|..+... ....-...+.++..+.++-.+++...+... ..... .....+++.+.|..
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~----~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAED----VDLALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTT----CCHHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcc----cCHHHHHHHcCCCC
Confidence 23444555554322 111234578899999998888888765321 11111 11345677777765
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.04 E-value=0.016 Score=71.51 Aligned_cols=157 Identities=17% Similarity=0.100 Sum_probs=84.5
Q ss_pred CCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 88 EPKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
-.+++|.+..++++.+++..... -.-.....|.|+|++|+||||||+.++.. ....| +.+...
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~----- 272 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP----- 272 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch-----
Confidence 35689999999999888753100 01124457999999999999999999873 22222 222211
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCH--------------hhHHhhhccCCCCCCCc
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENY--------------IRWSELRCPFVAGAAGS 226 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------------~~~~~l~~~l~~~~~~~ 226 (1206)
+ +... ........+...+.......+.++++|+++.... ..+..+...+. ...+.
T Consensus 273 -~----l~~~-----~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v 341 (806)
T 1ypw_A 273 -E----IMSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHV 341 (806)
T ss_dssp -H----HSSS-----STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCC
T ss_pred -H----hhhh-----hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccE
Confidence 0 1000 0011111222233333345678999999943210 00111111111 12345
Q ss_pred EEEEEccchH-HHhhcC----CCCceeCCCCChhhHHHHHHHhh
Q 045303 227 KIVVTTRNLV-VAERMR----ADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 227 ~iliTtr~~~-~~~~~~----~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.+|.||.... +...+. -...+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 6666666542 222111 12356788888898888888765
No 248
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.02 E-value=0.0055 Score=61.76 Aligned_cols=112 Identities=9% Similarity=-0.102 Sum_probs=60.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTV--DDNNLNSLQVKLKERL 192 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 192 (1206)
+..++.|+|..|+||||++..++.. ...+-..+..+.... +.. ....++.+++.... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~--d~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKI--DTR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECC--CGG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEecc--Cch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3479999999999999999888763 322222233332222 212 22233444432211 1123344555555544
Q ss_pred CCC-ceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 193 SGK-KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 193 ~~~-~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
.+. .-+||+|.+........+.+. .+.+ .+..||+|.+.
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLD 125 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCS
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecc
Confidence 444 459999999654323333222 2222 26789999985
No 249
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.79 E-value=0.034 Score=58.61 Aligned_cols=155 Identities=16% Similarity=0.087 Sum_probs=77.7
Q ss_pred CccccchhHHHHHHHHHhcCC--------CCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCCh
Q 045303 89 PKVYGREKEKEKIIELLLNDN--------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDV 160 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~--------~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~ 160 (1206)
.++.|-++..++|.+.+...- ..-..... +.|+|++|+||||||+.++.... . ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~--~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESG--L---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTT--C---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcC--C---CEEEEEcHHHHhh
Confidence 467788887777766542100 00011222 89999999999999999987321 1 1233322111100
Q ss_pred HHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCCceEEEEeCCCccCHh-----------hHHhhhccCCCC--CCCc
Q 045303 161 PRVTKSILESIANVTVDDNNLNSLQVKLKER-LSGKKFLLVLDDVWNENYI-----------RWSELRCPFVAG--AAGS 226 (1206)
Q Consensus 161 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~~-----------~~~~l~~~l~~~--~~~~ 226 (1206)
...........+.+. -...+.++++|+++..... ....+...+..+ ....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 000001111222222 2346789999999642100 011111112111 1334
Q ss_pred EEEEEccchHHHh-hc----CCCCceeCCCCChhhHHHHHHHhh
Q 045303 227 KIVVTTRNLVVAE-RM----RADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 227 ~iliTtr~~~~~~-~~----~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
-++.+|..+.+.. .. +-...+.+...+.++-.++++...
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 4556666554321 11 234567888889999888988765
No 250
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.79 E-value=0.019 Score=62.38 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=53.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 189 (1206)
...++.|+|++|+||||||.+++... ...-..++|++.....+.. .+++++... ....+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 45799999999999999999988632 2122346777766555543 333333221 12345566665555
Q ss_pred HHhC-CCceEEEEeCCCc
Q 045303 190 ERLS-GKKFLLVLDDVWN 206 (1206)
Q Consensus 190 ~~l~-~~~~LlvlDdv~~ 206 (1206)
..+. .+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5543 4566899999843
No 251
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.71 E-value=0.0061 Score=59.30 Aligned_cols=116 Identities=21% Similarity=0.178 Sum_probs=57.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccC------CC--CCCCC----H---
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIAN------VT--VDDNN----L--- 181 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~------~~--~~~~~----~--- 181 (1206)
..|.|++..|.||||.|-..+- |..++=..+.++...... ...--..+++.+.. .. ....+ .
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 4566677777999999966654 333332334444333221 11111223333310 00 00111 1
Q ss_pred HHHHHHHHHHhCC-CceEEEEeCCCcc---CHhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 182 NSLQVKLKERLSG-KKFLLVLDDVWNE---NYIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 182 ~~~~~~l~~~l~~-~~~LlvlDdv~~~---~~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
.......++.+.+ +--|||||++-.. .....+.+...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1122234455544 4459999998321 2233344444455555678899999984
No 252
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.64 E-value=0.011 Score=53.93 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=37.5
Q ss_pred EEEecCCCCcc--cCCccccCccccceeecccccccccccc-ccccccccEEecCCCc
Q 045303 504 VFSLCGYSNIF--SLPNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLEDCW 558 (1206)
Q Consensus 504 ~L~L~~~~~~~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~-~~~L~~L~~L~L~~n~ 558 (1206)
+++.+++ .++ .+|..+. .+|++|+|++|+|+.+|.. |..+++|++|+|++|.
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 5667776 666 7776554 4678888888888877664 5677788888887773
No 253
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.61 E-value=0.079 Score=58.31 Aligned_cols=156 Identities=9% Similarity=-0.078 Sum_probs=94.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHH-HhCC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKE-RLSG 194 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 194 (1206)
.++..++|..|.||++.|+.+..... ...|+....+.+... .+..++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPN---------------------TDWNAIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTT---------------------CCHHHHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCC---------------------CCHHHHHHHhcCcCCcc
Confidence 46899999999999999988876321 122321111122222 223333333221 2345
Q ss_pred CceEEEEeCCCc-cCHhhHHhhhccCCCCCCCcEEEEEccc-------hHHHhhc-CCCCceeCCCCChhhHHHHHHHhh
Q 045303 195 KKFLLVLDDVWN-ENYIRWSELRCPFVAGAAGSKIVVTTRN-------LVVAERM-RADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 195 ~~~LlvlDdv~~-~~~~~~~~l~~~l~~~~~~~~iliTtr~-------~~~~~~~-~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
++-++|+|+++. .....++.+...+....+++.+|+++.. ..+...+ .....++..++++++..+.+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 566889999976 4444566665555444456777766532 2333332 234578899999999998888776
Q ss_pred hCCCCCCCChhhHHHHHHHHHhcCCcchHHHH
Q 045303 266 LGARDFTRHQSLKEVGEQIVIKCGGLPLAAKT 297 (1206)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 297 (1206)
...+. .-..+.++.+++.++|...++..
T Consensus 156 ~~~g~----~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLNL----ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTTC----EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHcCC----CCCHHHHHHHHHHhchHHHHHHH
Confidence 43221 22346788899999998877654
No 254
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.55 E-value=0.03 Score=58.79 Aligned_cols=84 Identities=13% Similarity=0.076 Sum_probs=52.0
Q ss_pred EEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCC-----CCCCHHHH-HHHHHHH
Q 045303 118 VISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTV-----DDNNLNSL-QVKLKER 191 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 191 (1206)
++.|+|++|+||||||.+++........-..++|++....++.. .+++++.... .+.+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999998887632211012457888877766653 2555554321 23455555 3333222
Q ss_pred --h-CCCceEEEEeCCCc
Q 045303 192 --L-SGKKFLLVLDDVWN 206 (1206)
Q Consensus 192 --l-~~~~~LlvlDdv~~ 206 (1206)
+ ..+.-++|+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 2 45678999999843
No 255
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.24 E-value=0.019 Score=57.49 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=34.4
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 93 GREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 93 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|++.++++.+.+.... ..+..+++|.|.+|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 46677888888886532 23568999999999999999998875
No 256
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.22 E-value=0.56 Score=52.29 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++++|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999988875
No 257
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.21 E-value=0.038 Score=58.81 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=45.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC-CChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD-FDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLS 193 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 193 (1206)
+.++++|+|.+|+||||++..++........ ..+..+..... ....+.+....+..+.......+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 4579999999999999999988763221111 12344433221 122233333333333222112334444444443 3
Q ss_pred CCceEEEEeCC
Q 045303 194 GKKFLLVLDDV 204 (1206)
Q Consensus 194 ~~~~LlvlDdv 204 (1206)
.+.-++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 44568889954
No 258
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.15 E-value=0.037 Score=60.12 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=37.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccc----cceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
...++.|+|.+|+|||++|.+++........ -..++|++....++..++.. +++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 3469999999999999999988763211111 23678888777766665543 34444
No 259
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.06 E-value=0.052 Score=59.47 Aligned_cols=84 Identities=19% Similarity=0.117 Sum_probs=53.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 189 (1206)
...++.|+|.+|+|||+||..++... ...-..++|++....++.. .++.++... ....+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34589999999999999998887632 2222367888887765543 133333211 12345566666666
Q ss_pred HHhC-CCceEEEEeCCC
Q 045303 190 ERLS-GKKFLLVLDDVW 205 (1206)
Q Consensus 190 ~~l~-~~~~LlvlDdv~ 205 (1206)
...+ ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6554 345699999984
No 260
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.01 E-value=0.061 Score=58.88 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=38.6
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCccccc----ccceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
....++.|+|.+|+|||+||..++....... .-..++|++....++..++.. +++.+
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~ 180 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRF 180 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHc
Confidence 3557999999999999999998876321111 224678888877767665543 33443
No 261
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.00 E-value=0.054 Score=59.16 Aligned_cols=85 Identities=20% Similarity=0.124 Sum_probs=53.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 189 (1206)
...++.|+|.+|+||||||.+++... ...-..++|++....++.. .++.++... ....+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 44699999999999999999887632 2222357788777665543 233343221 12334555555555
Q ss_pred HHhC-CCceEEEEeCCCc
Q 045303 190 ERLS-GKKFLLVLDDVWN 206 (1206)
Q Consensus 190 ~~l~-~~~~LlvlDdv~~ 206 (1206)
.... .+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 4443 4567999999844
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.94 E-value=0.05 Score=56.08 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+++|.|++|+|||||++.++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999885
No 263
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.83 E-value=0.35 Score=53.99 Aligned_cols=25 Identities=32% Similarity=0.197 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+.++++++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888863
No 264
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.77 E-value=0.046 Score=56.77 Aligned_cols=49 Identities=14% Similarity=0.043 Sum_probs=32.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCccccc----ccceeEEEEEcCCCChHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKGWTCVSDDFDVPRV 163 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~ 163 (1206)
...++.|+|++|+||||||..++....... .-..++|+.....+....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 346999999999999999999876311111 1246777776654444433
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.75 E-value=0.035 Score=60.70 Aligned_cols=84 Identities=19% Similarity=0.098 Sum_probs=51.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 189 (1206)
..+++.|+|.+|+||||||.+++... ...-..++|++....++... ++.++... ....+.++..+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 44699999999999999998887632 22223578888776665432 33333211 12234455555444
Q ss_pred HHh-CCCceEEEEeCCC
Q 045303 190 ERL-SGKKFLLVLDDVW 205 (1206)
Q Consensus 190 ~~l-~~~~~LlvlDdv~ 205 (1206)
... ..+.-+||+|.+.
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 433 2455699999984
No 266
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.71 E-value=0.11 Score=62.63 Aligned_cols=159 Identities=16% Similarity=0.132 Sum_probs=79.8
Q ss_pred CCCccccchhHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCC
Q 045303 87 TEPKVYGREKEKEKIIELLLNDNL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFD 159 (1206)
Q Consensus 87 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 159 (1206)
.-.++.|-++..++|.+.+.-... .+....+-+.++|++|+|||.+|++++.. ....| +.++
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e--~~~~f-----~~v~---- 543 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQANF-----ISIK---- 543 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT--TTCEE-----EECC----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH--hCCce-----EEec----
Confidence 345677888888887776543211 01223456789999999999999999983 22222 2222
Q ss_pred hHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCceEEEEeCCCccCHh------h--------HHhhhccCCC--CC
Q 045303 160 VPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKKFLLVLDDVWNENYI------R--------WSELRCPFVA--GA 223 (1206)
Q Consensus 160 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~------~--------~~~l~~~l~~--~~ 223 (1206)
..+ ++.... ......+...+...-+..+++|+||+++..-.. . ...++..+-. ..
T Consensus 544 ~~~----l~s~~v-----Gese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 544 GPE----LLTMWF-----GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp HHH----HHTTTC-----SSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred cch----hhcccc-----chHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 111 222111 223333333333333567899999999642110 0 1112222211 12
Q ss_pred CCcEEEEEccchH-----HHhhcCCCCceeCCCCChhhHHHHHHHhh
Q 045303 224 AGSKIVVTTRNLV-----VAERMRADPVYQLKKLSDDDCLCVLTQIS 265 (1206)
Q Consensus 224 ~~~~iliTtr~~~-----~~~~~~~~~~~~l~~l~~~e~~~l~~~~~ 265 (1206)
.+.-||.||-.+. +.+..+-...+.+...+.++-.++|+.+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 3334444554332 22211334577887777777777877654
No 267
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.60 E-value=0.031 Score=64.08 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++|+++.++.+...+... .-|.|+|++|+|||++|+.++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 35899999999988887643 36889999999999999999874
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.49 E-value=0.09 Score=56.23 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=33.0
Q ss_pred cccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 91 VYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 91 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++|....+..+...+.... ...++.+++|.|+.|+||||+|+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455555555555555432 235678999999999999999998875
No 269
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.48 E-value=0.047 Score=59.39 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=38.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCccccc---------cc-----ceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQR---------HF-----QIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
...++.|+|.+|+|||++|.+++....... .. ..++|++....++..++... ++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~-~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM-AEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH-HHHc
Confidence 457999999999999999998875321111 11 46788887777766665533 3444
No 270
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.22 E-value=0.042 Score=58.34 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=29.6
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 96 KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 96 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+++++..+..... ......++.|.|++|+||||+|+.+..
T Consensus 14 ~~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 14 NRLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344445555444322 234568999999999999999999976
No 271
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.16 E-value=0.059 Score=49.10 Aligned_cols=56 Identities=18% Similarity=0.083 Sum_probs=37.2
Q ss_pred eeeccccCCc-ccccCCCCCCCCccEEEeccccCccccccccCCCCccCeeeeecCCCC
Q 045303 997 KIWIGYCPNL-ESFPEEGLPSTKLTELTIWDCENLKALPNCMHNLTSLLDLDIRGCPSV 1054 (1206)
Q Consensus 997 ~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 1054 (1206)
.++.+++.+. ..+|..+. ++|++|+|++|.+....+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666443 25554433 46778888888777666666777777888877777654
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.16 E-value=0.77 Score=48.63 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=46.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHhccCCC---CCCCCHHHHHHHHHHH
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILESIANVT---VDDNNLNSLQVKLKER 191 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~~ 191 (1206)
.++++++|.+|+||||++..++... ...-..+.++...... ...+.+....+..+..- ....+..++.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~--~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY--KKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH--HHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 6799999999999999998887632 2221234444433221 11222233333332211 1123444444333344
Q ss_pred hC-CCceEEEEeCCCc
Q 045303 192 LS-GKKFLLVLDDVWN 206 (1206)
Q Consensus 192 l~-~~~~LlvlDdv~~ 206 (1206)
++ +..-++|+|-.-.
T Consensus 176 ~~~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAGR 191 (297)
T ss_dssp HHHTTCSEEEEECCCS
T ss_pred HHhCCCCEEEEeCCCC
Confidence 43 3444888897633
No 273
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.16 E-value=0.035 Score=58.82 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999998876
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.97 E-value=0.024 Score=55.47 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999987
No 275
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.92 E-value=0.036 Score=55.80 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 97 EKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 97 ~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.+.+... ..+..+++|.|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445555555332 23567999999999999999998876
No 276
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.90 E-value=0.051 Score=58.51 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=50.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccc-cccceeEEEEEcCCCChHHHHHHHHHhccCC---C
Q 045303 100 KIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQIKGWTCVSDDFDVPRVTKSILESIANV---T 175 (1206)
Q Consensus 100 ~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~ 175 (1206)
+.++.+..- ++...++|+|.+|+|||||++.+.+.-..+ ..+. ++++.+++.. +-..++.+.+... .
T Consensus 163 raID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~---~Ev~~~~~~~~~~vV~a 233 (422)
T 3ice_A 163 RVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP---EEVTEMQRLVKGEVVAS 233 (422)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH---HHHHHHHTTCSSEEEEE
T ss_pred eeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh---HHHHHHHHHhCeEEEEe
Confidence 445555433 234588999999999999999887631111 1222 3345565442 2233344444211 1
Q ss_pred CCCCCHHHHHH------HHHHHh--CCCceEEEEeCC
Q 045303 176 VDDNNLNSLQV------KLKERL--SGKKFLLVLDDV 204 (1206)
Q Consensus 176 ~~~~~~~~~~~------~l~~~l--~~~~~LlvlDdv 204 (1206)
..+........ .+.+++ .++.+||++||+
T Consensus 234 tadep~~~r~~~a~~alt~AEyfrd~G~dVLil~Dsl 270 (422)
T 3ice_A 234 TFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSI 270 (422)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCc
Confidence 11122211111 112222 588999999999
No 277
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.87 E-value=0.039 Score=61.26 Aligned_cols=50 Identities=30% Similarity=0.308 Sum_probs=36.6
Q ss_pred ccccchhHHHHHHHHHhcC-------C--CCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 90 KVYGREKEKEKIIELLLND-------N--LRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 90 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.++|.+..++.+...+... . .......+.+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999988887310 0 001123457899999999999999999873
No 278
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.86 E-value=0.12 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...+++|.|.+|+|||||++.++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3459999999999999999988763
No 279
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.86 E-value=0.23 Score=53.55 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=36.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILES 170 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 170 (1206)
...++.|.|.+|+||||+|..++.+....+ ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 446999999999999999998876422222 456666544 4566776666654
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.77 E-value=0.032 Score=54.78 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 281
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.67 E-value=0.13 Score=54.75 Aligned_cols=108 Identities=20% Similarity=0.154 Sum_probs=55.2
Q ss_pred hhHHHHHHHHHhcCCC--CCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHH--HHHHHHHh
Q 045303 95 EKEKEKIIELLLNDNL--RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPR--VTKSILES 170 (1206)
Q Consensus 95 ~~~~~~l~~~L~~~~~--~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~--~~~~i~~~ 170 (1206)
+...++|.+.+..... -.....++++|+|++|+||||++..++... ...-..+.++.. ..+.... -+...++.
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~ 157 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAA-DTFRAAAIEQLKIWGER 157 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEE-CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEcc-ccccHHHHHHHHHHHHH
Confidence 3444555555533210 012356899999999999999999888632 222123344443 2333221 12233333
Q ss_pred ccCCC---CCCCCHHHH-HHHHHHHhCCCceEEEEeCCC
Q 045303 171 IANVT---VDDNNLNSL-QVKLKERLSGKKFLLVLDDVW 205 (1206)
Q Consensus 171 l~~~~---~~~~~~~~~-~~~l~~~l~~~~~LlvlDdv~ 205 (1206)
.+... ....+...+ ...+...+..+.-++|+|-.-
T Consensus 158 ~gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 158 VGATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp HTCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred cCCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 32211 112233322 234555555566688999764
No 282
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.66 E-value=0.15 Score=58.46 Aligned_cols=40 Identities=23% Similarity=0.483 Sum_probs=28.4
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 93 GREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 93 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+..+.++.+...+.... +.+.|.|.+|+|||+++..++..
T Consensus 29 ~Q~~av~~~~~~i~~~~-------~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-------HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-------CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-------CEEEEEeCCCCCHHHHHHHHHHH
Confidence 34445555555554321 38999999999999999888764
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.63 E-value=0.029 Score=54.52 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999986
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.62 E-value=0.041 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+..+++|.|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4479999999999999999999873
No 285
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.52 E-value=0.033 Score=54.45 Aligned_cols=20 Identities=50% Similarity=0.795 Sum_probs=18.7
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 045303 117 SVISINGMGGVGKTTLAQLV 136 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~ 136 (1206)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 286
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.40 E-value=0.037 Score=55.33 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++|+|+|++|+||||+|+.++.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999986
No 287
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.36 E-value=0.019 Score=56.29 Aligned_cols=22 Identities=27% Similarity=0.116 Sum_probs=19.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4888999999999999966665
No 288
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.34 E-value=0.06 Score=56.09 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 96 KEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 96 ~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+++...+..... ......++.|.|++|+||||+|+.+..
T Consensus 13 ~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 13 HALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344455555544332 334568999999999999999999976
No 289
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.23 E-value=0.047 Score=54.25 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999986
No 290
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.20 E-value=0.19 Score=55.69 Aligned_cols=57 Identities=16% Similarity=0.059 Sum_probs=35.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCccccc----ccceeEEEEEcCCCChHHHHHHHHHhcc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQIKGWTCVSDDFDVPRVTKSILESIA 172 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 172 (1206)
.-.++.|+|++|+|||||+..++-...... .-..++|++....+....+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 446999999999999999997652111111 2235777776655554443 33444443
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.17 E-value=0.054 Score=54.11 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+++|.|++|+||||+|+.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 292
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.15 E-value=0.22 Score=55.73 Aligned_cols=51 Identities=24% Similarity=0.251 Sum_probs=31.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHH
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSIL 168 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~ 168 (1206)
+.++|+|.+|+|||||+..+....... .-...+++.+++.. +..++..++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 468899999999999999888642211 12334555555543 2334444443
No 293
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.11 E-value=0.049 Score=53.30 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.10 E-value=0.072 Score=55.04 Aligned_cols=41 Identities=12% Similarity=-0.059 Sum_probs=28.9
Q ss_pred chhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 94 REKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 94 r~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
....+.++........ .+...|+|.|++|+||||+|+.+..
T Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 11 TIDLLNELKRRYACLS----KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp HHHHHHHHHHHHHHHT----SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcc----CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444455554443322 2567899999999999999999976
No 295
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.06 E-value=0.096 Score=56.21 Aligned_cols=45 Identities=24% Similarity=0.310 Sum_probs=32.9
Q ss_pred ccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 92 YGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 92 vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
|+-+...+++.+.+...-. .+....++|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455666777777654321 23556789999999999999998886
No 296
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.02 E-value=0.018 Score=70.92 Aligned_cols=52 Identities=25% Similarity=0.215 Sum_probs=37.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLR-------ADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-.+++|.++..+++.+.+.-.... .-...+.+.++|++|+|||+||+.++..
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 456788888888888766432110 0123456889999999999999999873
No 297
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.00 E-value=0.04 Score=53.70 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
|.|+|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999876
No 298
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.00 E-value=0.17 Score=55.29 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=30.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCccccccc----ceeEEEEEcCCCC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHF----QIKGWTCVSDDFD 159 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~ 159 (1206)
.-.++.|+|++|+|||||+..++......... ..++|++....+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 55799999999999999999988632111111 2347777655443
No 299
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.93 E-value=0.046 Score=53.89 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+.|+|+|++|+||||+|+.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999986
No 300
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.88 E-value=0.21 Score=53.84 Aligned_cols=53 Identities=13% Similarity=0.068 Sum_probs=35.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
...++.|.|.+|+||||+|..++..... .=..++|++. ..+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 3458999999999999999988864222 1124555443 456677777766543
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.86 E-value=0.051 Score=53.96 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++|+|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 302
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.85 E-value=0.042 Score=53.45 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|+|+|++|+||||+++.++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 303
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.79 E-value=0.26 Score=55.33 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCC---CCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 97 EKEKIIELLLNDNL---RADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 97 ~~~~l~~~L~~~~~---~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+++.+++..... ....++++|+++|.+|+||||+|..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44566666643211 01235789999999999999999888863
No 304
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.78 E-value=0.11 Score=50.87 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.6
Q ss_pred HHHHHhccCCceeEEEecCCCCccc-----CCccccCccccceeeccccccc-----cccccccccccccEEecCCCccc
Q 045303 491 VLKMLLNHLPRLRVFSLCGYSNIFS-----LPNEIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLEDCWKL 560 (1206)
Q Consensus 491 ~~~~~~~~~~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~~~~L~~L~~L~L~~n~~~ 560 (1206)
.+...+..-+.|+.|+|++|..+.. +-+++..-+.|+.|+|++|.|. .|-+.+..-+.|++|+|++|...
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4556677788899999987534432 3455666788999999999886 34445666788999999988432
Q ss_pred c----cccccccCCCccceeecCCCC
Q 045303 561 K----KLCKDMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 561 ~----~lp~~~~~L~~L~~L~l~~n~ 582 (1206)
. .+-+.+..-+.|++|+|++|.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCc
Confidence 1 233445556678888887653
No 305
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.76 E-value=0.073 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+++|+|++|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999876
No 306
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.73 E-value=0.046 Score=54.78 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++|+|.|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 307
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.71 E-value=0.063 Score=53.81 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.8
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+.++|.|.|+||+||+|.|+.++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999986
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.65 E-value=0.058 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+++|.|++|+||||+++.++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999976
No 309
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.65 E-value=0.042 Score=60.80 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=33.4
Q ss_pred CCccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 88 EPKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 88 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-.+++|.+...+.+........ ..-+.|+|++|+|||++|+.+++.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred chhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 3568999987666544443221 123889999999999999999863
No 310
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.65 E-value=0.061 Score=54.10 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...+++|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3469999999999999999999863
No 311
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.62 E-value=0.36 Score=53.76 Aligned_cols=25 Identities=28% Similarity=0.228 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+.++++|+|.+|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999888863
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.62 E-value=0.064 Score=52.71 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+...|+|+|++|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 313
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.62 E-value=0.07 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+|+|.|++|+||||+|+.++.
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999986
No 314
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.60 E-value=0.049 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++++|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 315
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.57 E-value=0.17 Score=59.46 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=53.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHH-HHh---
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLK-ERL--- 192 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l--- 192 (1206)
+++.|+|.+|+||||++..+....... ...+.+.... ......+.+.++.. ......+..... ...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT----~~Aa~~L~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPT----GKAARRLGEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESS----HHHHHHHHHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCc----HHHHHHhHhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 588999999999999998887632211 1223333221 12222232222111 000000000000 000
Q ss_pred --CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 193 --SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 193 --~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
..+.-+||+|++...+...+..+...++ .+.++|+..-.
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 0123499999998776666666665554 46677776543
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.56 E-value=0.048 Score=53.41 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++|.|+|++|+||||+|+.++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.54 E-value=0.062 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.53 E-value=0.055 Score=53.64 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|+|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.45 E-value=0.062 Score=55.88 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++++|.|++|+||||+|+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999986
No 320
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.43 E-value=0.066 Score=56.02 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+|.|.|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 321
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.43 E-value=0.071 Score=53.43 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.7
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999986
No 322
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.42 E-value=0.31 Score=50.41 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=26.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVS 155 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~ 155 (1206)
...++.|.|.+|+||||+|.+++... ...-..++|+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e 60 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALE 60 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcc
Confidence 34589999999999999998886532 1122345666543
No 323
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.38 E-value=0.079 Score=53.28 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999863
No 324
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.32 E-value=0.072 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+|+|.|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 325
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.29 E-value=0.066 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346999999999999999997553
No 326
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.28 E-value=0.29 Score=52.58 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+.++++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999988876
No 327
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.26 E-value=0.066 Score=53.28 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+|+|.|++|+||||+|+.++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 328
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.21 E-value=0.28 Score=52.13 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=45.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHH--HHHHHHhccCCCC---CCCCHHHHHH-HH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRV--TKSILESIANVTV---DDNNLNSLQV-KL 188 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~--~~~i~~~l~~~~~---~~~~~~~~~~-~l 188 (1206)
+.++++|+|.+|+||||++..++... ...-..+.++.. ........ +....+..+.... ...++.++.. .+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~--~~~~~~v~l~~~-d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH--HHTTCCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEecC-CcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 45799999999999999999888632 221122334333 22222211 2223333322111 1234444433 33
Q ss_pred HHHhCCCceEEEEeCC
Q 045303 189 KERLSGKKFLLVLDDV 204 (1206)
Q Consensus 189 ~~~l~~~~~LlvlDdv 204 (1206)
......+.-++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3333345568889976
No 329
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.21 E-value=0.4 Score=51.61 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..+++|+|+.|+||||+++.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999998886
No 330
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.18 E-value=0.075 Score=55.39 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.15 E-value=0.09 Score=51.76 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...+++|.|++|+||||+|+.++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 332
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.14 E-value=0.077 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+|+|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999873
No 333
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.12 E-value=0.067 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+|+|.|++|+||||+|+.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999986
No 334
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.10 E-value=0.098 Score=51.01 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 98 KEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 98 ~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+..+..++... ++...+.|+|++|+|||++|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45555655431 23457899999999999999888763
No 335
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.08 E-value=0.079 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...|+|.|++|+||||+|+.++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 336
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.06 E-value=0.078 Score=52.04 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+.++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999886
No 337
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.06 E-value=0.079 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 338
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.06 E-value=0.057 Score=52.59 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|.|++|+||||+|+.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 688999999999999999986
No 339
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.02 E-value=0.083 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|++|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999975
No 340
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.99 E-value=0.087 Score=53.17 Aligned_cols=24 Identities=46% Similarity=0.389 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 341
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.94 E-value=0.083 Score=53.12 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+++|+|++|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999863
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.90 E-value=0.12 Score=56.53 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=57.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCCCc
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSGKK 196 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 196 (1206)
.+++|+|+.|+||||+.+.+... ........+ +.+....... .... .....+.............+...|..++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~-~~~v~q~~~~~~~~~~~~~La~aL~~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESK-KCLVNQREVHRDTLGFSEALRSALREDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCS-SSEEEEEEBTTTBSCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhcc-ccceeeeeeccccCCHHHHHHHHhhhCc
Confidence 59999999999999999988752 111111222 2222221110 0000 0000000001111234557888888999
Q ss_pred eEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchHH
Q 045303 197 FLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLVV 237 (1206)
Q Consensus 197 ~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~~ 237 (1206)
=+|++|+..+. ..+..+.... ..|..|++|+.....
T Consensus 198 dvillDEp~d~--e~~~~~~~~~---~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 198 DIILVGEMRDL--ETIRLALTAA---ETGHLVFGTLHTTSA 233 (356)
T ss_dssp SEEEESCCCSH--HHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred CEEecCCCCCH--HHHHHHHHHH---hcCCEEEEEEccChH
Confidence 99999999643 2333333221 235568888876443
No 343
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.85 E-value=0.066 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++++|.|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.84 E-value=0.08 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++++|.|..|+||||++..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999998863
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.81 E-value=0.058 Score=53.05 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|+|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 346
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.81 E-value=0.15 Score=54.59 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=28.1
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSD 156 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 156 (1206)
++.+||+|+|-|||||||.|..++.. ....=..+.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a--LA~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA--FSILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH--HHHCCCeEEEEecCC
Confidence 46799999999999999999766652 222222455666653
No 347
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.78 E-value=0.73 Score=51.16 Aligned_cols=106 Identities=14% Similarity=-0.005 Sum_probs=56.9
Q ss_pred CCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCC---CCCCCCHHHHHHHHH
Q 045303 113 DDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANV---TVDDNNLNSLQVKLK 189 (1206)
Q Consensus 113 ~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~ 189 (1206)
....++..|.|.+|.|||++.++.+.. .....+ +.. .+...++.+.+... .............+.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~lVl--TpT---~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~ 225 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVNF-------EEDLIL--VPG---RQAAEMIRRRANASGIIVATKDNVRTVDSFLM 225 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCCT-------TTCEEE--ESC---HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHH
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhcc-------CCeEEE--eCC---HHHHHHHHHHhhhcCccccccceEEEeHHhhc
Confidence 457889999999999999999888752 111222 222 23344444444321 111222233333333
Q ss_pred HHhCCC---ceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccc
Q 045303 190 ERLSGK---KFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRN 234 (1206)
Q Consensus 190 ~~l~~~---~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~ 234 (1206)
+....+ --++|+|++.-.+...+..+..... ..++|+..-.
T Consensus 226 ~~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~ 269 (446)
T 3vkw_A 226 NYGKGARCQFKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDT 269 (446)
T ss_dssp TTTSSCCCCCSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECT
T ss_pred CCCCCCCCcCCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCc
Confidence 222211 3589999997665555554443322 2566666544
No 348
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.75 E-value=0.076 Score=53.00 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 349
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.75 E-value=0.054 Score=53.23 Aligned_cols=23 Identities=43% Similarity=0.460 Sum_probs=16.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 350
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.69 E-value=0.082 Score=53.04 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 351
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.68 E-value=0.097 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 352
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.67 E-value=0.087 Score=51.19 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988763
No 353
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.67 E-value=0.11 Score=51.55 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 354
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.65 E-value=0.083 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...|+|.|++|+||||+|+.++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 355
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.64 E-value=0.13 Score=57.36 Aligned_cols=50 Identities=28% Similarity=0.334 Sum_probs=36.3
Q ss_pred CccccchhHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLND--------NLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.++..+.+..++... ........+-+.++|++|+|||++|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 46899999888887776331 000011345688999999999999999987
No 356
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.60 E-value=0.068 Score=51.88 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++|+|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 357
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.53 E-value=0.71 Score=52.71 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 98 KEKIIELLLNDNLR---ADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 98 ~~~l~~~L~~~~~~---~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++|.+.+...... ...+.++|+|+|.+|+||||++..++.
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555555432110 114578999999999999999998885
No 358
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.51 E-value=0.1 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++|.|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.47 E-value=0.088 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 360
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.47 E-value=0.11 Score=54.92 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+|+|+|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999873
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.43 E-value=0.093 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 362
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.42 E-value=0.1 Score=51.33 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.-.+|+|+|+.|+||||+|+.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 363
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=91.41 E-value=0.6 Score=52.04 Aligned_cols=65 Identities=25% Similarity=0.279 Sum_probs=41.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHh
Q 045303 100 KIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILES 170 (1206)
Q Consensus 100 ~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 170 (1206)
+.++.+..- ++-.-++|.|.+|+|||+|+.++++.. .+.+-+.++++-++... ...++.+++.+.
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 355656432 234578999999999999999988632 12223456667676653 455666666553
No 364
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.36 E-value=0.092 Score=52.64 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 789999999999999999876
No 365
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.35 E-value=0.079 Score=52.70 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998875
No 366
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.29 E-value=0.099 Score=50.41 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999986
No 367
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.29 E-value=0.46 Score=55.21 Aligned_cols=54 Identities=13% Similarity=0.063 Sum_probs=35.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESI 171 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 171 (1206)
...++.|.|.+|+|||++|.+++.+.... +=..++|++. ..+..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~--E~s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAML--EESVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEec--cCCHHHHHHHHHHHH
Confidence 44689999999999999999888642211 1124566654 335667776665443
No 368
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.24 E-value=0.1 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+++|.|++|+||||+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999999984
No 369
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.20 E-value=0.21 Score=66.05 Aligned_cols=84 Identities=19% Similarity=0.099 Sum_probs=53.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 189 (1206)
+.+.+.|+|++|+|||+||.+++.. ....=..++|++.....+... ++.++..- ......++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 5679999999999999999988763 222223567777776665555 33333110 12233445555555
Q ss_pred HHh-CCCceEEEEeCCC
Q 045303 190 ERL-SGKKFLLVLDDVW 205 (1206)
Q Consensus 190 ~~l-~~~~~LlvlDdv~ 205 (1206)
+.. ..+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 544 3567899999994
No 370
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.04 E-value=0.098 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...|+|.|++|+||||+|+.++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 371
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.03 E-value=0.11 Score=53.14 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|+|+|++|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999875
No 372
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.03 E-value=0.13 Score=55.14 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..+++|.|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3567999999999999999998876
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=90.95 E-value=0.11 Score=51.59 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 374
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.94 E-value=0.11 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.4
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+|+|.|++|+||||+|+.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 375
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.89 E-value=0.14 Score=53.07 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++|.|+.|+||||+++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999998875
No 376
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.75 E-value=0.21 Score=50.95 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=28.0
Q ss_pred hhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 95 EKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 95 ~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
++..+.+...+.. .+...|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555554432 24578899999999999999998864
No 377
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=90.71 E-value=0.8 Score=51.77 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=34.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILES 170 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 170 (1206)
+..++.|.|.+|+|||++|..++.+.... -..++|++. ..+..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSl--Ems~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSL--EMGKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECS--SSCTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEEC--CCCHHHHHHHHHHH
Confidence 44689999999999999999888743222 124555543 34455666665543
No 378
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=90.68 E-value=0.16 Score=48.01 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+++|.|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999999876
No 379
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.67 E-value=0.13 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+++|+|+.|+|||||++.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999876
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.66 E-value=0.14 Score=54.62 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999998875
No 381
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.64 E-value=0.49 Score=53.29 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
....+++|+|..|+|||||++.++.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3567999999999999999999886
No 382
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.62 E-value=0.14 Score=51.56 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+|+|.|++|+||||+|+.+..
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999876
No 383
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.60 E-value=0.1 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+...|+|.|++|+||||+|+.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999986
No 384
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=90.57 E-value=0.48 Score=53.02 Aligned_cols=64 Identities=23% Similarity=0.228 Sum_probs=42.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC-ChHHHHHHHHHh
Q 045303 101 IIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF-DVPRVTKSILES 170 (1206)
Q Consensus 101 l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~ 170 (1206)
.++.|..- .+-.-++|.|.+|+|||+|+.++++.. .+.+-+.++++-++... ...++..++.+.
T Consensus 155 vID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred Eeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 45555432 234578899999999999999988732 12233566777777664 456666666653
No 385
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.49 E-value=0.11 Score=52.50 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 386
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.49 E-value=0.14 Score=51.48 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+++|.|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35999999999999999999875
No 387
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.48 E-value=0.13 Score=51.21 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999986
No 388
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.48 E-value=0.81 Score=63.05 Aligned_cols=138 Identities=15% Similarity=0.033 Sum_probs=72.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH-hCCC
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKER-LSGK 195 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~~ 195 (1206)
+-|.++|++|+|||++|+.+.... ..+ ....+..+...+...+...+-..+......... +..- -.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~-------~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL-------TLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE-------EEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc-------cccCCCCCc
Confidence 478899999999999997776532 122 234556666666655554444433211000000 0000 0467
Q ss_pred ceEEEEeCCCccCHh------hHHhhhccCCCC-----C-------CCcEEEEEccchH------HHh-hcCCCCceeCC
Q 045303 196 KFLLVLDDVWNENYI------RWSELRCPFVAG-----A-------AGSKIVVTTRNLV------VAE-RMRADPVYQLK 250 (1206)
Q Consensus 196 ~~LlvlDdv~~~~~~------~~~~l~~~l~~~-----~-------~~~~iliTtr~~~------~~~-~~~~~~~~~l~ 250 (1206)
++++++||++-.... ..+.++..+-.+ . .+..+|.++-... +.. ..+....+.+.
T Consensus 1337 ~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~ 1416 (2695)
T 4akg_A 1337 NLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLG 1416 (2695)
T ss_dssp CEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECC
T ss_pred eEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeC
Confidence 889999996433211 222222221111 1 1234555553321 111 11233568889
Q ss_pred CCChhhHHHHHHHhh
Q 045303 251 KLSDDDCLCVLTQIS 265 (1206)
Q Consensus 251 ~l~~~e~~~l~~~~~ 265 (1206)
..++++-.++|....
T Consensus 1417 ~P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CCTTTHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999998888887765
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.40 E-value=0.15 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 390
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.37 E-value=0.43 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...|+|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.36 E-value=0.13 Score=52.06 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999976
No 392
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.26 E-value=0.11 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..|+|.|++|+||||+|+.++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 393
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.12 E-value=0.14 Score=51.82 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.0
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|.|++|+||||+|+.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
No 394
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.12 E-value=0.15 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+|+|.|+.|+||||+++.++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35999999999999999999985
No 395
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.12 E-value=0.33 Score=52.12 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.2
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..+++|.|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3557999999999999999998876
No 396
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.09 E-value=0.08 Score=53.56 Aligned_cols=21 Identities=38% Similarity=0.681 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|+|.|++|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 789999999999999999876
No 397
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.04 E-value=0.19 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|+|+|+.|+||||||..++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 446999999999999999999987
No 398
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.03 E-value=0.89 Score=51.66 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=35.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILES 170 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 170 (1206)
...++.|.|.+|+|||++|..++...... .-..++|++.. .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 44689999999999999999888642211 11245665543 4556676666544
No 399
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.02 E-value=0.61 Score=53.25 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=33.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
...++.|.|.+|+||||+|..++...... .-..++|++.. .+..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESS--SCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC--CCHHHHHHHHH
Confidence 34699999999999999999988642211 11245665543 34556655554
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.98 E-value=0.2 Score=59.67 Aligned_cols=43 Identities=26% Similarity=0.273 Sum_probs=36.4
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..++|.+..++.+...+... ..+.|+|++|+||||+|+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 56899999998888877532 37899999999999999999873
No 401
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.93 E-value=0.4 Score=53.82 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
++++|+|+|.+|+||||+|..++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 402
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.86 E-value=0.18 Score=53.06 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=21.1
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++|+|.|+.|+|||+||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999986
No 403
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.84 E-value=0.79 Score=46.86 Aligned_cols=21 Identities=43% Similarity=0.533 Sum_probs=17.4
Q ss_pred EEEEEEccCCCcHHHHHHHHh
Q 045303 117 SVISINGMGGVGKTTLAQLVY 137 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~ 137 (1206)
+.+.|.|..|+||||++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 488999999999998775554
No 404
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.79 E-value=0.23 Score=49.01 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457889999999999999998864
No 405
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.75 E-value=0.31 Score=53.57 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 98 KEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 98 ~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++.+.+... .++..+|+|+|.+|+||||++..+..
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHH
Confidence 44455555332 23678999999999999999988875
No 406
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.74 E-value=0.26 Score=50.01 Aligned_cols=41 Identities=29% Similarity=0.305 Sum_probs=29.9
Q ss_pred cchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 93 GREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 93 Gr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+.++..+++...+.. .+.++++|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344555555555532 24679999999999999999988763
No 407
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.64 E-value=0.17 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++|+|.|+.|+||||+|..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999986
No 408
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.50 E-value=0.18 Score=48.82 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.+.|.|.|++|+|||+||.+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999873
No 409
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.40 E-value=0.37 Score=47.56 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.|+|-|..|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788899999999999999873
No 410
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.39 E-value=0.68 Score=50.97 Aligned_cols=46 Identities=22% Similarity=0.268 Sum_probs=33.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|....+.++...+..... ....|.|+|.+|+||+++|+.+..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~----~~~~vli~GesGtGKe~lAr~ih~ 174 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK----SKAPVLITGESGTGKEIVARLIHR 174 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT----SCSCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhc----cchhheEEeCCCchHHHHHHHHHH
Confidence 4688988887777666643221 122477999999999999998876
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.37 E-value=0.24 Score=50.35 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...+|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=89.35 E-value=0.18 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+++|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 413
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.29 E-value=0.64 Score=48.10 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=31.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSIL 168 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 168 (1206)
...++.|.|.+|+|||++|.+++.+. ....-..+++++.. .+..++.+.+.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E--~~~~~~~~~~~ 79 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE--ERARDLRREMA 79 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS--SCHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc--CCHHHHHHHHH
Confidence 34689999999999999998876531 11112234454433 34555555443
No 414
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=89.28 E-value=0.23 Score=52.15 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++++|.|+.|+|||+||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999986
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.28 E-value=0.15 Score=52.48 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|+|+|++|+||||+++.++.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 416
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.19 E-value=0.19 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++|+|+|+.|+||||+|+.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999986
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.18 E-value=0.19 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.135 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...|+|.|++|+||||+|+.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999986
No 418
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.13 E-value=0.19 Score=49.97 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++.|.|+||+||+|.|+.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999986
No 419
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.12 E-value=0.13 Score=49.50 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998876
No 420
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.11 E-value=0.2 Score=48.14 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.++++|+|..|+|||||++.+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999999998886
No 421
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.94 E-value=0.23 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++|+|+.|+||||+++.++.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999998876
No 422
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=88.92 E-value=0.2 Score=50.96 Aligned_cols=21 Identities=43% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999976
No 423
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.91 E-value=0.22 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.-.+++|+|++|+|||||++.++.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999875
No 424
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=88.88 E-value=1.3 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+++.|+|.+|+||||++..+..
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~ 186 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLA 186 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999999887764
No 425
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=88.87 E-value=0.2 Score=50.29 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999976
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=88.83 E-value=0.11 Score=55.22 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 427
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=88.82 E-value=1.2 Score=47.98 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 99 EKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 99 ~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-+.++.+..- ++-.-+.|.|.+|+|||+|+.++++.
T Consensus 163 iraID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHH
Confidence 3566666543 23457899999999999999988873
No 428
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=88.79 E-value=0.19 Score=49.27 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999988763
No 429
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.77 E-value=0.2 Score=50.53 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 045303 118 VISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999986
No 430
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.71 E-value=0.15 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=16.3
Q ss_pred cEEEEEEccCCCcHHHHHHHHh-c
Q 045303 116 FSVISINGMGGVGKTTLAQLVY-N 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~-~ 138 (1206)
..+++|+|+.|+||||+++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3589999999999999999998 5
No 431
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=88.67 E-value=0.39 Score=51.64 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=29.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF 158 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 158 (1206)
.+.++|+|+|-||+||||+|..++... ...=..+.-++.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCCCC
Confidence 456899999999999999998877632 2222245566665443
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.60 E-value=0.22 Score=53.50 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 433
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.59 E-value=0.23 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
....+|.|+|++|+||||+|+.++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999986
No 434
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.49 E-value=0.22 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++|.|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346999999999999999998873
No 435
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.43 E-value=0.26 Score=48.16 Aligned_cols=93 Identities=18% Similarity=0.100 Sum_probs=67.4
Q ss_pred HHHHHHHhccCCceeEEEecCCCCccc-----CCccccCccccceeeccccccc-----cccccccccccccEEecCCCc
Q 045303 489 WSVLKMLLNHLPRLRVFSLCGYSNIFS-----LPNEIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLEDCW 558 (1206)
Q Consensus 489 ~~~~~~~~~~~~~L~~L~L~~~~~~~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~~~~L~~L~~L~L~~n~ 558 (1206)
...+...+..-+.|+.|+|++| .+.. +-+.+..-+.|++|+|++|.|. .|-+.+..-+.|+.|+|++|.
T Consensus 59 a~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~ 137 (197)
T 1pgv_A 59 IRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQR 137 (197)
T ss_dssp HHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCc
Confidence 3446667788899999999999 6643 3344556688999999999987 244456667789999998762
Q ss_pred c--cc-----cccccccCCCccceeecCCCC
Q 045303 559 K--LK-----KLCKDMGNLTKLRHLRNSNAD 582 (1206)
Q Consensus 559 ~--~~-----~lp~~~~~L~~L~~L~l~~n~ 582 (1206)
. ++ .+...+..-+.|+.|+++.|.
T Consensus 138 ~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 138 QSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp SCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2 22 234455666889999988775
No 436
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.29 E-value=0.24 Score=50.73 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|+.|+|||||++.++.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999986
No 437
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.29 E-value=0.41 Score=49.16 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 99 EKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 99 ~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+..++... .++...+.++|++|+|||.+|..+++
T Consensus 91 ~~l~~~l~~~----~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKK----FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTC----STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3455566432 12345799999999999999999986
No 438
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.12 E-value=0.26 Score=50.38 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|+|+.|+|||||++.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999875
No 439
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.94 E-value=0.75 Score=61.06 Aligned_cols=85 Identities=19% Similarity=0.096 Sum_probs=55.1
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCC-----CCCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVT-----VDDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 189 (1206)
..+++.|+|++|+||||||.+++... ...-..++|++.....+... ++.++... .+..+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45699999999999999999988642 22223567777666655431 44444321 12345666666665
Q ss_pred HHh-CCCceEEEEeCCCc
Q 045303 190 ERL-SGKKFLLVLDDVWN 206 (1206)
Q Consensus 190 ~~l-~~~~~LlvlDdv~~ 206 (1206)
... ..+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 34567999999854
No 440
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.90 E-value=0.26 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 441
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.85 E-value=0.69 Score=60.52 Aligned_cols=83 Identities=19% Similarity=0.106 Sum_probs=0.0
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCC-----CCCCHHHHHHHHH
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTV-----DDNNLNSLQVKLK 189 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 189 (1206)
..+++.|+|.+|+||||||.+++. .....-..++|++.....+... ++.++.... +..+.++....++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHH
Q ss_pred HHh-CCCceEEEEeCC
Q 045303 190 ERL-SGKKFLLVLDDV 204 (1206)
Q Consensus 190 ~~l-~~~~~LlvlDdv 204 (1206)
... ..+.-+||+|-+
T Consensus 455 ~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHhcCCCEEEECCH
No 442
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.84 E-value=0.28 Score=50.54 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...|+|.|..|+||||+++.++..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 443
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.79 E-value=0.28 Score=50.21 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+++|+|+.|+|||||++.++.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999763
No 444
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.78 E-value=0.3 Score=51.12 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..++++.|.||+||||++..++.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHH
Confidence 567889999999999999999875
No 445
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.60 E-value=0.32 Score=52.94 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+..+++|+|+.|+||||+++.++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 567999999999999999998876
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.52 E-value=0.35 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 447
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.45 E-value=0.46 Score=47.30 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-.|.+.|.||+||||+|..++..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34788999999999998777763
No 448
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.43 E-value=0.28 Score=48.04 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEEccCCCcHHHHHHHHhcC
Q 045303 118 VISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 118 vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999863
No 449
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=87.36 E-value=1.1 Score=49.88 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=34.9
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..++|....+.++.+.+..... ... -|.|.|.+|+|||++|+.+..
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~---~~~-~vli~Ge~GtGK~~lAr~ih~ 182 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC---AEC-PVLITGESGVGKEVVARLIHK 182 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT---CCS-CEEEECSTTSSHHHHHHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhcC---CCC-CeEEecCCCcCHHHHHHHHHH
Confidence 3578888888888877765322 223 358999999999999998876
No 450
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.21 E-value=0.36 Score=50.16 Aligned_cols=111 Identities=15% Similarity=0.085 Sum_probs=53.8
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTVDDNNLNSLQVKLKERLSG 194 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 194 (1206)
...+++|+|+.|+||||+++.+... ....+...+++.-....... +.. ..+..+..-..+...+...+.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~---~~~-~~~v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVF---KHK-KSIVNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCC---CCS-SSEEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeec---CCc-ceeeeHHHhCCCHHHHHHHHHHHHhh
Confidence 3469999999999999999988752 11111233332211100000 000 00000000000012234556666666
Q ss_pred CceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccchH
Q 045303 195 KKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNLV 236 (1206)
Q Consensus 195 ~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~~ 236 (1206)
++-++++|+..+.. ....+.... ..|..|++|+....
T Consensus 98 ~p~illlDEp~D~~--~~~~~l~~~---~~g~~vl~t~H~~~ 134 (261)
T 2eyu_A 98 DPDVIFVGEMRDLE--TVETALRAA---ETGHLVFGTLHTNT 134 (261)
T ss_dssp CCSEEEESCCCSHH--HHHHHHHHH---HTTCEEEEEECCSS
T ss_pred CCCEEEeCCCCCHH--HHHHHHHHH---ccCCEEEEEeCcch
Confidence 77789999996322 222222221 23556777776543
No 451
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.19 E-value=0.35 Score=49.67 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.3
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.-.+++|+|+.|+|||||++.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346999999999999999999875
No 452
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.16 E-value=0.54 Score=47.17 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.4
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+...|+|.|+.|+||||+++.+...
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5679999999999999999999873
No 453
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.15 E-value=0.31 Score=50.69 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
..+++|.|+.|+|||||++.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999886
No 454
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.13 E-value=0.3 Score=51.66 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=21.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346999999999999999998875
No 455
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.12 E-value=0.31 Score=53.47 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+++|+|++|+|||||++.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 456
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.10 E-value=0.24 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|+.|+|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999998875
No 457
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.00 E-value=0.32 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.9
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|.|+.|+|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999999875
No 458
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.99 E-value=0.31 Score=50.96 Aligned_cols=22 Identities=45% Similarity=0.499 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 459
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=86.97 E-value=0.33 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.-.|+|+|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999864
No 460
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=86.94 E-value=0.33 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.0
Q ss_pred CCcEEEEEEccCCCcHHHHHHHHhc
Q 045303 114 DGFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 114 ~~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+..+++|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999998876
No 461
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=86.86 E-value=0.64 Score=51.50 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=48.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccc-cccc-eeEEEEEcCC-CChHHHHHHHHHhccCC------CCCCCCHHHH---
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQ-IKGWTCVSDD-FDVPRVTKSILESIANV------TVDDNNLNSL--- 184 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~-~~f~-~~~wv~~~~~-~~~~~~~~~i~~~l~~~------~~~~~~~~~~--- 184 (1206)
.-++|.|.+|+|||+|+.++++..... ++-+ .++++-+++. ....++..++.+.-... ...++.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 356788999999999999988743321 1111 4556666654 34555666654431000 1112222111
Q ss_pred ---HHHHHHHh---CCCceEEEEeCC
Q 045303 185 ---QVKLKERL---SGKKFLLVLDDV 204 (1206)
Q Consensus 185 ---~~~l~~~l---~~~~~LlvlDdv 204 (1206)
.-.+.+++ .++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11234444 368999999998
No 462
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=86.73 E-value=0.44 Score=54.42 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=31.8
Q ss_pred CccccchhHHHHHHHHHhcCCCCCCCCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLRADDGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+..+.|.+..+.+.+.. ... .....+|.+.|++|+||||+|+.++..
T Consensus 372 P~~f~rpeV~~vLr~~~-~~~---~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 372 PEWFSYPEVVKILRESN-PPR---PKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CTTTSCHHHHHHHHHHS-CCG---GGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred CccccChhhHHHHHHhc-ccc---cccceEEEecccCCCCHHHHHHHHHHH
Confidence 34555655555555533 111 124578999999999999999999873
No 463
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=86.71 E-value=0.28 Score=49.05 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|+.|+|||||++.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999875
No 464
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=86.71 E-value=0.37 Score=47.15 Aligned_cols=24 Identities=21% Similarity=-0.149 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.++.+++|..|.||||.+...++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 479999999999999999777763
No 465
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.71 E-value=0.22 Score=58.74 Aligned_cols=51 Identities=27% Similarity=0.351 Sum_probs=32.2
Q ss_pred CccccchhHHHHHHHHHhcCCCC--CC---CCcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 89 PKVYGREKEKEKIIELLLNDNLR--AD---DGFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 89 ~~~vGr~~~~~~l~~~L~~~~~~--~~---~~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+.++|.+.....+...+...... .+ ....-|.++|++|+|||++|+.++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 45788887666665444322100 00 00115889999999999999999863
No 466
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.58 E-value=0.36 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
...+|+|.|+.|+||||+++.+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 467
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.58 E-value=0.34 Score=49.68 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 468
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.47 E-value=0.36 Score=50.16 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 469
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.47 E-value=0.36 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|.|+.|+|||||++.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35999999999999999999975
No 470
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=86.47 E-value=0.34 Score=50.43 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.++.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999999986
No 471
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.38 E-value=0.35 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 472
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.36 E-value=0.35 Score=49.74 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999876
No 473
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=86.31 E-value=1.4 Score=49.36 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=48.0
Q ss_pred CcEEEEEEccCCCcHHHHH-HHHhcCcccccccc-eeEEEEEcCCC-ChHHHHHHHHHhccCC------CCCCCCHH---
Q 045303 115 GFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFQ-IKGWTCVSDDF-DVPRVTKSILESIANV------TVDDNNLN--- 182 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~--- 182 (1206)
+-.-++|.|.+|+|||+|| ..+.+. + .-+ .++++-+++.. .+.++...+.+.-... ...++...
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~---~-~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ---R-DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT---S-SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh---c-cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 3346789999999999997 455552 1 223 34677777653 4455666554431111 01112211
Q ss_pred -------HHHHHHHHHhCCCceEEEEeCC
Q 045303 183 -------SLQVKLKERLSGKKFLLVLDDV 204 (1206)
Q Consensus 183 -------~~~~~l~~~l~~~~~LlvlDdv 204 (1206)
..++.++. .++.+|+++||+
T Consensus 237 ~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 12223332 588999999999
No 474
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.29 E-value=0.27 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhc
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+...|+|.|..|+||||+|+.++.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999988876
No 475
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.29 E-value=0.36 Score=50.14 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|+.|+|||||++.++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999975
No 476
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.25 E-value=0.37 Score=49.75 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|+.|+|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 477
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.23 E-value=0.38 Score=50.16 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.0
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|+|+.|+|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 478
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.23 E-value=0.37 Score=50.36 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|+|+.|+|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999975
No 479
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.22 E-value=0.38 Score=52.59 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=20.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
++|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999999986
No 480
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.10 E-value=0.62 Score=51.99 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=50.2
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcCcccccc--cceeEEEEEcCCC-ChHHHHHHHHHhccCC------CCCCCCHHH---
Q 045303 116 FSVISINGMGGVGKTTLAQLVYNDDRVQRH--FQIKGWTCVSDDF-DVPRVTKSILESIANV------TVDDNNLNS--- 183 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~--- 183 (1206)
-.-++|.|.+|+|||+|+..++++...... =+.++++-+++.. ...++..++.+.-... ...++....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 345677899999999999999875433211 1345566666543 4556666665431111 011122211
Q ss_pred ---HHHHHHHHh---CCCceEEEEeCC
Q 045303 184 ---LQVKLKERL---SGKKFLLVLDDV 204 (1206)
Q Consensus 184 ---~~~~l~~~l---~~~~~LlvlDdv 204 (1206)
..-.+.+++ .++.+|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111233343 468999999997
No 481
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.08 E-value=0.36 Score=47.92 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=20.8
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999864
No 482
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.06 E-value=0.51 Score=47.09 Aligned_cols=40 Identities=25% Similarity=0.108 Sum_probs=26.0
Q ss_pred EEEEEE-ccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCC
Q 045303 117 SVISIN-GMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDF 158 (1206)
Q Consensus 117 ~vv~i~-G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 158 (1206)
++|+|+ +-||+||||+|..++... ...-..+..++.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~l--a~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATAL--SRSGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHH--HHTTCCEEEEECCTTC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHH--HHCCCeEEEEECCCCC
Confidence 577777 678999999998887632 2222245556655443
No 483
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=86.00 E-value=0.52 Score=46.50 Aligned_cols=110 Identities=9% Similarity=-0.092 Sum_probs=50.2
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCCCChHHHHHHHHHhccCCCC--CCCCHHHHHHHHHHHh
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDDFDVPRVTKSILESIANVTV--DDNNLNSLQVKLKERL 192 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l 192 (1206)
...+.+++|.-|.||||.|...+.... ..-..++.+.... +...-...+...++.... ...+.+ .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~--~~g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQ--FAKQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH--HCCCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 346889999999999999977766322 2212222222111 111111223333322110 011111 222233
Q ss_pred CCCceEEEEeCCCccCHhhHHhhhccCCCCCCCcEEEEEccch
Q 045303 193 SGKKFLLVLDDVWNENYIRWSELRCPFVAGAAGSKIVVTTRNL 235 (1206)
Q Consensus 193 ~~~~~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iliTtr~~ 235 (1206)
.++--+|++|.+.--+....+.+ ..+.+ .+..||+|.++.
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEECSB
T ss_pred hcCCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEeccc
Confidence 33344999999965432233222 22222 377899999863
No 484
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=86.00 E-value=0.84 Score=50.53 Aligned_cols=88 Identities=14% Similarity=0.189 Sum_probs=48.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccc--------cccc-eeEEEEEcCCC-ChHHHHHHHHHhccC-------CCCCCC
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQ--------RHFQ-IKGWTCVSDDF-DVPRVTKSILESIAN-------VTVDDN 179 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~-------~~~~~~ 179 (1206)
.-++|.|.+|+|||+|+.++++..... ++-+ .++++.+++.. ...++..++.+.-.. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 456788999999999999988753321 1111 45566666543 455555555442100 001111
Q ss_pred CHHHH-----HHHHHHHh---CCCceEEEEeCC
Q 045303 180 NLNSL-----QVKLKERL---SGKKFLLVLDDV 204 (1206)
Q Consensus 180 ~~~~~-----~~~l~~~l---~~~~~LlvlDdv 204 (1206)
..... .-.+.+++ .++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 12111 11233444 368999999998
No 485
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.98 E-value=4.1 Score=41.45 Aligned_cols=20 Identities=35% Similarity=0.207 Sum_probs=17.8
Q ss_pred EEEEccCCCcHHHHHHHHhc
Q 045303 119 ISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 119 v~i~G~~GiGKTtLa~~~~~ 138 (1206)
+.|+|+.|.|||.+|..++.
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~ 130 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAIN 130 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 77899999999999987775
No 486
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=85.96 E-value=0.45 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+-|+|.|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998764
No 487
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.93 E-value=0.65 Score=47.14 Aligned_cols=24 Identities=38% Similarity=0.565 Sum_probs=21.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..+|+|.|++|+||||+++.++..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 488
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.92 E-value=0.38 Score=50.88 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.6
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.++.|+|++|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35999999999999999998875
No 489
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.92 E-value=0.55 Score=45.96 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+...|+|+|.+|+|||||+..+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999863
No 490
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=85.83 E-value=0.66 Score=48.68 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=26.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC
Q 045303 117 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD 157 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 157 (1206)
++|+|.|-||+||||+|..++... ...-..+..++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l--a~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL--HAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH--HTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH--HHCCCcEEEEcCCCC
Confidence 578889999999999998887632 222224555665543
No 491
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=85.82 E-value=0.39 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999986
No 492
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.66 E-value=0.41 Score=49.91 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.7
Q ss_pred cEEEEEEccCCCcHHHHHHHHhc
Q 045303 116 FSVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
-.+++|+|+.|+|||||++.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 493
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=85.60 E-value=0.47 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
+-|.|.|.+|+||||+|.++..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999998876
No 494
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.52 E-value=0.56 Score=45.33 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=21.6
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
+...|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999764
No 495
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.41 E-value=0.51 Score=47.58 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=18.5
Q ss_pred cEEEEEEccCCCcHHHHHHHHhcC
Q 045303 116 FSVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 116 ~~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
...|+|.|+.|+||||+++.++..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 496
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.35 E-value=0.42 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|.|+.|+|||||++.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999986
No 497
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=85.35 E-value=0.42 Score=50.16 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 045303 117 SVISINGMGGVGKTTLAQLVYN 138 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~ 138 (1206)
.+++|+|+.|+|||||++.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999986
No 498
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=85.33 E-value=1.1 Score=50.16 Aligned_cols=86 Identities=19% Similarity=0.176 Sum_probs=48.1
Q ss_pred CcEEEEEEccCCCcHHHHH-HHHhcCcccccccc-eeEEEEEcCCC-ChHHHHHHHHHhccCC------CCCCCCHHHH-
Q 045303 115 GFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFQ-IKGWTCVSDDF-DVPRVTKSILESIANV------TVDDNNLNSL- 184 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~- 184 (1206)
+-.-++|.|.+|+|||+|| ..+++.. .-+ .++++-+++.. .+.++...+.+.-... ...++.....
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3356889999999999996 4666532 233 24566666553 4455555555421110 1111221111
Q ss_pred -----HHHHHHHh--CCCceEEEEeCC
Q 045303 185 -----QVKLKERL--SGKKFLLVLDDV 204 (1206)
Q Consensus 185 -----~~~l~~~l--~~~~~LlvlDdv 204 (1206)
.-.+.+++ .++.+|+++||+
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 11223333 578999999998
No 499
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=85.21 E-value=0.7 Score=49.87 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=27.9
Q ss_pred CcEEEEEEccCCCcHHHHHHHHhcCcccccccceeEEEEEcCC
Q 045303 115 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQIKGWTCVSDD 157 (1206)
Q Consensus 115 ~~~vv~i~G~~GiGKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 157 (1206)
..+++.+.|-||+||||+|..++.. ....-..+.-++....
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~--la~~g~~vllid~D~~ 55 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQ--LAKVRRSVLLLSTDPA 55 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH--HTTSSSCEEEEECCSS
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHH--HHhCCCcEEEEECCCC
Confidence 3578899999999999999888753 2222234555555543
No 500
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=85.16 E-value=0.76 Score=45.88 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcC
Q 045303 117 SVISINGMGGVGKTTLAQLVYND 139 (1206)
Q Consensus 117 ~vv~i~G~~GiGKTtLa~~~~~~ 139 (1206)
..|+|.|+.|+||||+++.++..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
Done!