BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045304
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 126/427 (29%), Positives = 181/427 (42%), Gaps = 59/427 (13%)
Query: 56 VRLPNLEVLRMRSNNFCGTIPHFIFN-ASKLSLLELGDNSFSG-FIPDTFGNLRN-LNKV 112
+++ L+VL + N F G +P + N ++ L L+L N+FSG +P+ N +N L ++
Sbjct: 337 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 396
Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC 172
L NN T +LSNC L + LS N L G +P +S+G+LS + N
Sbjct: 397 YLQNNGFTGKIP-----PTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNM 450
Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICR 232
+ G IP+E+ + L + L N L G IP ++N+L G IP I R
Sbjct: 451 -LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 509
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN------------ELTSIPLTFWNL 280
L L L L +N FS +IPA + SL L L +N + I F
Sbjct: 510 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 569
Query: 281 KDILYL-----------------------------------NFSSNFLTGPLPLEIENLK 305
K +Y+ N +S G +N
Sbjct: 570 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 629
Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXXXXXXXX 365
++ +D S N SG IP IGS+ L L +G+N + GSIP +GDL
Sbjct: 630 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 689
Query: 366 XGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPPCK 425
G IP ++ L+ L +++LS N L+G IP G F F F N LCG P R P
Sbjct: 690 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 749
Query: 426 TS--THH 430
HH
Sbjct: 750 ADGYAHH 756
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 183/417 (43%), Gaps = 43/417 (10%)
Query: 12 LELLVLSHNKLVGVIPT--KVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRSN 69
L L LS N L G + T + + S LK V G++L +LEVL + +N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 70 NF-------------CGTIPHFIFNASKLS------------LLELGDNSFSGFIPDTFG 104
+ CG + H + +K+S L++ N+FS IP G
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLG 217
Query: 105 NLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSL 164
+ L + + N L+ +F ++S C L +++S N G +P + SL
Sbjct: 218 DCSALQHLDISGNKLSG-----DFSRAISTCTELKLLNISSNQFVGPIPPLPL----KSL 268
Query: 165 EYFYMPNCNVSGGIPEEISNLTN-LIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLE 223
+Y + +G IP+ +S + L + L GN G++P + N
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 328
Query: 224 GSIP-NNICRLTELYELDLGSNKFSRSIPACFSNL-ASLRTLSLGSNELTS--IPLTFWN 279
G +P + + ++ L LDL N+FS +P +NL ASL TL L SN + +P N
Sbjct: 329 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 388
Query: 280 LKDILY-LNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGY 338
K+ L L +N TG +P + N LV + S N SG IP+++GSL L+ L +
Sbjct: 389 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 448
Query: 339 NRLQGSIPYSIGDLIXXXXXXXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPR 395
N L+G IP + + G IP L + L ++LS N+L GEIP+
Sbjct: 449 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 164/348 (47%), Gaps = 12/348 (3%)
Query: 6 IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLR 65
+G+ L+ L +S NKL G + + LK+ + I + L +L+ L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP---IPPLPLKSLQYLS 272
Query: 66 MRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
+ N F G IP F+ A L+ L+L N F G +P FG+ L + L +N +
Sbjct: 273 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI-PEEIS 183
+ +L + L +DLS N G LP S+ NLS SL + + N SG I P
Sbjct: 333 ----MDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQ 387
Query: 184 NLTN-LIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLG 242
N N L +YL N G IP T + N L G+IP+++ L++L +L L
Sbjct: 388 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 447
Query: 243 SNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLPLEI 301
N IP + +L TL L N+LT IP N ++ +++ S+N LTG +P I
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 302 ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI 349
L+ L + S N+FSG IP +G + L +L + N G+IP ++
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 27/319 (8%)
Query: 1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
+IP + N L L LS N L G IP+ + ++S L+ ++ + +
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKT 464
Query: 61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
LE L + N+ G IP + N + L+ + L +N +G IP G L NL + L NN +
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP-------GTSVGNLSHSLEYFYMPN-- 171
N + L +C++L ++DL+ N +G +P G N Y Y+ N
Sbjct: 525 G-----NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 579
Query: 172 ----CNVSGGI-------PEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADN 220
C+ +G + E+++ L+ + G T + N
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 221 KLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWN 279
L G IP I + L+ L+LG N S SIP +L L L L SN+L IP
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 699
Query: 280 LKDILYLNFSSNFLTGPLP 298
L + ++ S+N L+GP+P
Sbjct: 700 LTMLTEIDLSNNNLSGPIP 718
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 179/418 (42%), Gaps = 57/418 (13%)
Query: 56 VRLPNLEVLRMRSNNFCGTIPHFIFN-ASKLSLLELGDNSFSG-FIPDTFGNLRN-LNKV 112
+++ L+VL + N F G +P + N ++ L L+L N+FSG +P+ N +N L ++
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399
Query: 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNC 172
L NN T +LSNC L + LS N L G +P +S+G+LS + N
Sbjct: 400 YLQNNGFTGKIP-----PTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNM 453
Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICR 232
+ G IP+E+ + L + L N L G IP ++N+L G IP I R
Sbjct: 454 -LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN------------ELTSIPLTFWNL 280
L L L L +N FS +IPA + SL L L +N + I F
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572
Query: 281 KDILYL-----------------------------------NFSSNFLTGPLPLEIENLK 305
K +Y+ N +S G +N
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXXXXXXXX 365
++ +D S N SG IP IGS+ L L +G+N + GSIP +GDL
Sbjct: 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692
Query: 366 XGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSPNLRVPP 423
G IP ++ L+ L +++LS N L+G IP G F F F N LCG P R P
Sbjct: 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 117/417 (28%), Positives = 183/417 (43%), Gaps = 43/417 (10%)
Query: 12 LELLVLSHNKLVGVIPT--KVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRSN 69
L L LS N L G + T + + S LK V G++L +LEVL + +N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 70 NF-------------CGTIPHFIFNASKLS------------LLELGDNSFSGFIPDTFG 104
+ CG + H + +K+S L++ N+FS IP G
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-FLG 220
Query: 105 NLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSL 164
+ L + + N L+ +F ++S C L +++S N G +P + SL
Sbjct: 221 DCSALQHLDISGNKLSG-----DFSRAISTCTELKLLNISSNQFVGPIPPLPL----KSL 271
Query: 165 EYFYMPNCNVSGGIPEEISNLTN-LIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLE 223
+Y + +G IP+ +S + L + L GN G++P + N
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331
Query: 224 GSIP-NNICRLTELYELDLGSNKFSRSIPACFSNL-ASLRTLSLGSNELTS--IPLTFWN 279
G +P + + ++ L LDL N+FS +P +NL ASL TL L SN + +P N
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391
Query: 280 LKDILY-LNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGY 338
K+ L L +N TG +P + N LV + S N SG IP+++GSL L+ L +
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 339 NRLQGSIPYSIGDLIXXXXXXXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPR 395
N L+G IP + + G IP L + L ++LS N+L GEIP+
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 164/348 (47%), Gaps = 12/348 (3%)
Query: 6 IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLR 65
+G+ L+ L +S NKL G + + LK+ + I + L +L+ L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP---IPPLPLKSLQYLS 275
Query: 66 MRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
+ N F G IP F+ A L+ L+L N F G +P FG+ L + L +N +
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI-PEEIS 183
+ +L + L +DLS N G LP S+ NLS SL + + N SG I P
Sbjct: 336 ----MDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 184 NLTN-LIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLG 242
N N L +YL N G IP T + N L G+IP+++ L++L +L L
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 243 SNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILYLNFSSNFLTGPLPLEI 301
N IP + +L TL L N+LT IP N ++ +++ S+N LTG +P I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 302 ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI 349
L+ L + S N+FSG IP +G + L +L + N G+IP ++
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 137/319 (42%), Gaps = 27/319 (8%)
Query: 1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
+IP + N L L LS N L G IP+ + ++S L+ ++ + +
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKT 467
Query: 61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
LE L + N+ G IP + N + L+ + L +N +G IP G L NL + L NN +
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 121 SSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP-------GTSVGNLSHSLEYFYMPN-- 171
N + L +C++L ++DL+ N +G +P G N Y Y+ N
Sbjct: 528 G-----NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 172 ----CNVSGGI-------PEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADN 220
C+ +G + E+++ L+ + G T + N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 221 KLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWN 279
L G IP I + L+ L+LG N S SIP +L L L L SN+L IP
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702
Query: 280 LKDILYLNFSSNFLTGPLP 298
L + ++ S+N L+GP+P
Sbjct: 703 LTMLTEIDLSNNNLSGPIP 721
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 44/101 (43%)
Query: 58 LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
+P L +L + N+ G+IP + + L++L+L N G IP L L ++ L NN
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158
L+ ++ + K L L PL P + G
Sbjct: 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADG 755
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 115/250 (46%), Gaps = 8/250 (3%)
Query: 178 IPEEISNLTNLIIIYLGG-NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTEL 236
IP ++NL L +Y+GG N L G IP + G+IP+ + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT-SIPLTFWNLKDILY-LNFSSNFLT 294
LD N S ++P S+L +L ++ N ++ +IP ++ + + + S N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 295 GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIX 354
G +P NL L +D S N G GS K Q + + N L + +G
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKN 245
Query: 355 XXXXXXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLC 414
GT+P L +L +L LN+SFN L GEIP+GG+ F ++ N+ LC
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305
Query: 415 GSPNLRVPPC 424
GSP +P C
Sbjct: 306 GSP---LPAC 312
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 32/226 (14%)
Query: 2 IPHEIGNLRNLELLVLSH-NKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPN 60
IP + NL L L + N LVG IP + ++ L + ++
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKT 126
Query: 61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNL-NKVTLYNNYL 119
L L N GT+P I + L + N SG IPD++G+ L +T+ N L
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDG---ILPGTS-------------------V 157
T + +N L ++DLS N L+G +L G+ V
Sbjct: 187 TGKIP-----PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
Query: 158 GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIP 203
G LS +L + N + G +P+ ++ L L + + N L G IP
Sbjct: 241 G-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
+IP+NI T+ +LDL SNK S F L LR L L N+L ++P F LK++
Sbjct: 30 AIPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 284 LYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342
L + N L LP+ + + L L + N + P SL L YL +GYN LQ
Sbjct: 88 ETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Query: 343 GSIPYSIGDLIXXXXXXXXXXXXXGTIPV-SLEKLSYLEDLNLSFNKLAGEIPRGG 397
S+P + D + +P + +KL+ L+ L L N+L +P G
Sbjct: 147 -SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGA 200
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 59/156 (37%), Gaps = 1/156 (0%)
Query: 185 LTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSN 244
LT L ++YL NKL DNKL+ +L L EL L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIEN 303
+ P F +L L LSLG NEL S+P F L + L +N L +
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179
Query: 304 LKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN 339
L L + N V SL+ L+ L + N
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 92/334 (27%), Positives = 141/334 (42%), Gaps = 60/334 (17%)
Query: 53 IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
I GV L NL + +N P + N +KL + + +N + P NL NL
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------------------SSTSDLNF------LSSLSNC 135
+TL+NN +T +S LNF L L+N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL 171
Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
TL +D+S N + I SV +LE N +S P I LTNL + L G
Sbjct: 172 TTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNG 225
Query: 196 NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
N+L T A+N++ P + LT+L EL LG+N+ S P +
Sbjct: 226 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 256 NLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
L +L L L N+L I P++ NLK++ YL N ++ P + +L L + FS
Sbjct: 280 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSN 335
Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
N S V +++ +L + +L G+N++ P +
Sbjct: 336 NKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 367
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 64/279 (22%)
Query: 6 IGNLRNLELLVLSHNKLVGV-IPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVR----LPN 60
+ NL LE L +S NK+ + + K+ N+ +L I+ + L N
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESL----------IATNNQISDITPLGILTN 217
Query: 61 LEVLRMRSNNF--CGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
L+ L + N GT+ + L+ L+L +N S P L L ++ L N
Sbjct: 218 LDELSLNGNQLKDIGTLASL----TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
+++ +S L+ LT ++L++N L+ I P +++ NL++ YF N+S
Sbjct: 272 ISN-------ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF----NNISDIS 320
Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYE 238
P +S+LT L ++ NK+ S +++ LT +
Sbjct: 321 P--VSSLTKLQRLFFSNNKV--------------------------SDVSSLANLTNINW 352
Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTF 277
L G N+ S P +NL + L L T+ P+ +
Sbjct: 353 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 389
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 462 KRVKPPPNDANMPP-------VATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQ 514
+R KP + ++P + +RFS EL A+D FS N++GRGGFG VYK R+
Sbjct: 1 RRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA 60
Query: 515 DGMEVAVK 522
DG VAVK
Sbjct: 61 DGTLVAVK 68
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 87/361 (24%), Positives = 142/361 (39%), Gaps = 65/361 (18%)
Query: 11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRSNN 70
N+ +L L+HN+L + PT S L + + + + LP L+VL ++ N
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQI-LPLLKVLNLQHNE 84
Query: 71 FCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS-------- 122
+ L+ L+L NS + F N +NL K+ L +N L+S+
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQL 144
Query: 123 -----------------TSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG--TSVGNLSHS 163
+ +L FL + +L +DLS NPL PG ++G L
Sbjct: 145 ENLQELLLAKNKILALRSEELEFLGN----SSLRKLDLSSNPLKEFSPGCFQTIGKLFAL 200
Query: 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLE 223
L N +++ + E+SN T++ + L N+L + +++
Sbjct: 201 LLNNAQLNPHLTEKLCWELSN-TSIQNLSLANNQLLAT----------------SESTFS 243
Query: 224 GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKD 282
G + T L +LDL N FS L SLR LSL N + + P +F+ L +
Sbjct: 244 G------LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSN 297
Query: 283 ILYLNFSSNFLTGPLPL---------EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY 333
+ YL+ F + L + LK L ++ NN T L L+Y
Sbjct: 298 LRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKY 357
Query: 334 L 334
L
Sbjct: 358 L 358
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 123/347 (35%), Gaps = 48/347 (13%)
Query: 60 NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYL 119
N+ VL + N P S+L++L+ G NS S P+ L L + L +N L
Sbjct: 26 NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 120 TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179
S SD F+ C LT +DL N + I
Sbjct: 86 -SQISDQTFVF----CTNLTELDLMSNSIHKIKSN------------------------- 115
Query: 180 EEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRL--TELY 237
N NLI + L N L+ + T A NK+ + L + L
Sbjct: 116 -PFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLR 174
Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS--IPLTFWNLKD--ILYLNFSSNFL 293
+LDL SN P CF + L L L + +L W L + I L+ ++N L
Sbjct: 175 KLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQL 234
Query: 294 TGPLPLEIENLKV--LVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
LK L +D S NN V + L L+YL + YN +Q P S
Sbjct: 235 LATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYG 294
Query: 352 LIXXXXXXXXXXXXXGTIPV---------SLEKLSYLEDLNLSFNKL 389
L ++ + S + L YLE LN+ N +
Sbjct: 295 LSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 143/335 (42%), Gaps = 61/335 (18%)
Query: 53 IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
I GV L NL + +N P + N +KL + + +N + P NL NL
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------SSTSDLNFLSSLS-------------------N 134
+TL+NN +T ++ SD++ LS L+ N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG 194
TL +D+S N + I SV +LE N +S P I LTNL + L
Sbjct: 172 LTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLN 225
Query: 195 GNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF 254
GN+L T A+N++ P + LT+L EL LG+N+ S P
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 255 SNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
+ L +L L L N+L I P++ NLK++ YL N ++ P + +L L + FS
Sbjct: 280 AGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFS 335
Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
N S V +++ +L + +L G+N++ P +
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 30/205 (14%)
Query: 9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRS 68
L +L+ L S N++ + P + N++TL+ ++ +L NLE L +
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVL---AKLTNLESLIATN 204
Query: 69 NNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS------- 121
N P I + L L L N T +L NL + L NN +++
Sbjct: 205 NQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL 260
Query: 122 --------STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN 173
+ ++ +S L+ LT ++L++N L+ I P +++ NL++ YF N
Sbjct: 261 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF----NN 316
Query: 174 VSGGIPEEISNLTNLIIIYLGGNKL 198
+S P +S+LT L ++ NK+
Sbjct: 317 ISDISP--VSSLTKLQRLFFSNNKV 339
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 480 RRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVK 522
+RFS EL A+D F N++GRGGFG VYK R+ DG VAVK
Sbjct: 18 KRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVK 60
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 143/334 (42%), Gaps = 60/334 (17%)
Query: 53 IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
I GV L NL + +N P + N +KL + + +N + P NL NL
Sbjct: 60 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 115
Query: 112 VTLYNNYLT------------------SSTSDLNFLSSLS------------------NC 135
+TL+NN +T ++ SD++ LS L+ N
Sbjct: 116 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 175
Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
TL +D+S N + I SV +LE N +S P I LTNL + L G
Sbjct: 176 TTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNG 229
Query: 196 NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
N+L T A+N++ P + LT+L EL LG+N+ S P +
Sbjct: 230 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 283
Query: 256 NLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
L +L L L N+L I P++ NLK++ YL N ++ P + +L L + F+
Sbjct: 284 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 339
Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
N S V +++ +L + +L G+N++ P +
Sbjct: 340 NKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 371
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 64/279 (22%)
Query: 6 IGNLRNLELLVLSHNKLVGV-IPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVR----LPN 60
+ NL LE L +S NK+ + + K+ N+ +L I+ + L N
Sbjct: 172 LANLTTLERLDISSNKVSDISVLAKLTNLESL----------IATNNQISDITPLGILTN 221
Query: 61 LEVLRMRSNNF--CGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
L+ L + N GT+ + L+ L+L +N S P L L ++ L N
Sbjct: 222 LDELSLNGNQLKDIGTLASL----TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 275
Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
+++ +S L+ LT ++L++N L+ I P +++ NL++ YF N+S
Sbjct: 276 ISN-------ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF----NNISDIS 324
Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYE 238
P +S+LT L ++ NK+ S +++ LT +
Sbjct: 325 P--VSSLTKLQRLFFANNKV--------------------------SDVSSLANLTNINW 356
Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTF 277
L G N+ S P +NL + L L T+ P+ +
Sbjct: 357 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 393
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 140/334 (41%), Gaps = 60/334 (17%)
Query: 53 IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
I GV L NL + +N P + N +KL + + +N + P NL NL
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------------------SSTSDLNF------LSSLSNC 135
+TL+NN +T +S LNF L L+N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL 171
Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
TL +D+S N + I SV +LE N +S P I LTNL + L G
Sbjct: 172 TTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNG 225
Query: 196 NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
N+L T A+N++ P + LT+L EL LG+N+ S P +
Sbjct: 226 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 279
Query: 256 NLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
L +L L L N+L I P++ NLK++ YL N ++ P + +L L + F
Sbjct: 280 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 335
Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
N S V +++ +L + +L G+N++ P +
Sbjct: 336 NKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 367
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 64/279 (22%)
Query: 6 IGNLRNLELLVLSHNKLVGV-IPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVR----LPN 60
+ NL LE L +S NK+ + + K+ N+ +L I+ + L N
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESL----------IATNNQISDITPLGILTN 217
Query: 61 LEVLRMRSNNF--CGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
L+ L + N GT+ + L+ L+L +N S P L L ++ L N
Sbjct: 218 LDELSLNGNQLKDIGTLASL----TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
+++ +S L+ LT ++L++N L+ I P +++ NL++ YF N+S
Sbjct: 272 ISN-------ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF----NNISDIS 320
Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYE 238
P +S+LT L ++ NK+ S +++ LT +
Sbjct: 321 P--VSSLTKLQRLFFYNNKV--------------------------SDVSSLANLTNINW 352
Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTF 277
L G N+ S P +NL + L L T+ P+ +
Sbjct: 353 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 389
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 140/335 (41%), Gaps = 61/335 (18%)
Query: 53 IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
I GV L NL + +N P + N +KL + + +N + P NL NL
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------------------SSTSDLNF-------LSSLSN 134
+TL+NN +T +S LNF L L+N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLAN 171
Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG 194
TL +D+S N + I SV +LE N +S P I LTNL + L
Sbjct: 172 LTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLN 225
Query: 195 GNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF 254
GN+L T A+N++ P + LT+L EL LG+N+ S P
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 255 SNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
+ L +L L L N+L I P++ NLK++ YL N ++ P + +L L + F
Sbjct: 280 AGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 335
Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
N S V +++ +L + +L G+N++ P +
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 30/205 (14%)
Query: 9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRS 68
L +L+ L S N++ + P + N++TL+ ++ +L NLE L +
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVL---AKLTNLESLIATN 204
Query: 69 NNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS------- 121
N P I + L L L N T +L NL + L NN +++
Sbjct: 205 NQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL 260
Query: 122 --------STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN 173
+ ++ +S L+ LT ++L++N L+ I P +++ NL++ YF N
Sbjct: 261 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF----NN 316
Query: 174 VSGGIPEEISNLTNLIIIYLGGNKL 198
+S P +S+LT L ++ NK+
Sbjct: 317 ISDISP--VSSLTKLQRLFFYNNKV 339
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/334 (26%), Positives = 142/334 (42%), Gaps = 60/334 (17%)
Query: 53 IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
I GV L NL + +N P + N +KL + + +N + P NL NL
Sbjct: 61 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116
Query: 112 VTLYNNYLT------------------SSTSDLNFLSSLS------------------NC 135
+TL+NN +T ++ SD++ LS L+ N
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195
TL +D+S N + I SV +LE N +S P I LTNL + L G
Sbjct: 177 TTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNG 230
Query: 196 NKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255
N+L T A+N++ P + LT+L EL LG+N+ S P +
Sbjct: 231 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284
Query: 256 NLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314
L +L L L N+L I P++ NLK++ YL N ++ P + +L L + F
Sbjct: 285 GLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYN 340
Query: 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
N S V +++ +L + +L G+N++ P +
Sbjct: 341 NKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 372
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 115/279 (41%), Gaps = 64/279 (22%)
Query: 6 IGNLRNLELLVLSHNKLVGV-IPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVR----LPN 60
+ NL LE L +S NK+ + + K+ N+ +L I+ + L N
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAKLTNLESL----------IATNNQISDITPLGILTN 222
Query: 61 LEVLRMRSNNF--CGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY 118
L+ L + N GT+ + L+ L+L +N S P L L ++ L N
Sbjct: 223 LDELSLNGNQLKDIGTLASL----TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276
Query: 119 LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178
+++ +S L+ LT ++L++N L+ I P +++ NL++ YF N+S
Sbjct: 277 ISN-------ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF----NNISDIS 325
Query: 179 PEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYE 238
P +S+LT L ++ NK+ S +++ LT +
Sbjct: 326 P--VSSLTKLQRLFFYNNKV--------------------------SDVSSLANLTNINW 357
Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTF 277
L G N+ S P +NL + L L T+ P+ +
Sbjct: 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 394
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 142/335 (42%), Gaps = 61/335 (18%)
Query: 53 IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
I GV L NL + +N P + N +KL + + +N + P NL NL
Sbjct: 56 IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 111
Query: 112 VTLYNNYLT------------------SSTSDLNFLSSLS-------------------N 134
+TL+NN +T ++ SD++ LS L+ N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG 194
TL +D+S N + I SV +LE N +S P I LTNL + L
Sbjct: 172 LTTLERLDISSNKVSDI----SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLN 225
Query: 195 GNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF 254
GN+L T A+N++ P + LT+L EL LG+N+ S P
Sbjct: 226 GNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 279
Query: 255 SNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313
+ L +L L L N+L I P++ NLK++ YL N ++ P + +L L + F
Sbjct: 280 AGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFY 335
Query: 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348
N S V +++ +L + +L G+N++ P +
Sbjct: 336 NNKVSDV--SSLANLTNINWLSAGHNQISDLTPLA 368
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 90/205 (43%), Gaps = 30/205 (14%)
Query: 9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRS 68
L +L+ L S N++ + P + N++TL+ ++ +L NLE L +
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVL---AKLTNLESLIATN 204
Query: 69 NNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS------- 121
N P I + L L L N T +L NL + L NN +++
Sbjct: 205 NQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSGL 260
Query: 122 --------STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN 173
+ ++ +S L+ LT ++L++N L+ I P +++ NL++ YF N
Sbjct: 261 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF----NN 316
Query: 174 VSGGIPEEISNLTNLIIIYLGGNKL 198
+S P +S+LT L ++ NK+
Sbjct: 317 ISDISP--VSSLTKLQRLFFYNNKV 339
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLP 298
DL +K + + FS+ L L+L NE+ I FW L +L LN S NFL
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 299 LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
ENL L +D S N+ + + L L+ L + N+L+ S+P I D
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 28/93 (30%)
Query: 184 NLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNI-CRLTELYELDLG 242
+LT L +YLGGN+L S+P+ + RLT+L EL L
Sbjct: 105 HLTQLDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRLN 139
Query: 243 SNKFSRSIPA-CFSNLASLRTLSLGSNELTSIP 274
+N+ +SIPA F L +L+TLSL +N+L S+P
Sbjct: 140 TNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
LT+L L+L N+ F +L L TL L +N+L S+PL F +L + L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 292 FLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG 350
L LP + + L L + + N + L LQ L + N+LQ S+P+
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAF 175
Query: 351 D 351
D
Sbjct: 176 D 176
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
S+P+ I TE +LDL S + A F L L L+L N+L ++ F +L ++
Sbjct: 28 SVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
L ++N L LPL + L L L++G N+L+
Sbjct: 86 GTLGLANNQL-ASLPLGV-----------------------FDHLTQLDKLYLGGNQLK- 120
Query: 344 SIPYSIGDLIXXXXXXXXXXXXXGTIPV-SLEKLSYLEDLNLSFNKLAGEIPRGG--SFG 400
S+P + D + +IP + +KL+ L+ L+LS N+L +P G G
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG 179
Query: 401 NFSAESFEGNELLC 414
+ GN+ C
Sbjct: 180 KLQTITLFGNQFDC 193
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 57 RLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115
RL L+ LR+ +N +IP F+ + L L L N F L L +TL+
Sbjct: 129 RLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 116 NNYLTSSTSDLNFLSS 131
N S + +LS
Sbjct: 188 GNQFDCSRCETLYLSQ 203
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 28/94 (29%)
Query: 183 SNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNI-CRLTELYELDL 241
+LT L +YLGGN+L S+P+ + RLT+L EL L
Sbjct: 104 DHLTQLDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRL 138
Query: 242 GSNKFSRSIPA-CFSNLASLRTLSLGSNELTSIP 274
+N+ +SIPA F L +L+TLSL +N+L S+P
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
LT+L L+L N+ F +L L TL L +N+L S+PL F +L + L N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
L + L L + + N + L LQ L + N+LQ S+P+ D
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFD 176
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 32/194 (16%)
Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDI 283
S+P+ I TE +LDL S + A F L L L+L N+L ++ F +L ++
Sbjct: 28 SVPSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85
Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
L ++N L LPL + L L L++G N+L+
Sbjct: 86 GTLGLANNQL-ASLPLGV-----------------------FDHLTQLDKLYLGGNQLK- 120
Query: 344 SIPYSIGDLIXXXXXXXXXXXXXGTIPV-SLEKLSYLEDLNLSFNKLAGEIPRGG--SFG 400
S+P + D + +IP + +KL+ L+ L+LS N+L +P G G
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG 179
Query: 401 NFSAESFEGNELLC 414
+ GN+ C
Sbjct: 180 KLQTITLFGNQFDC 193
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 57 RLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115
RL L+ LR+ +N +IP F+ + L L L N F L L +TL+
Sbjct: 129 RLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187
Query: 116 NNYLTSSTSDLNFLSS 131
N S ++ +LS
Sbjct: 188 GNQFDCSRCEILYLSQ 203
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 88/226 (38%), Gaps = 34/226 (15%)
Query: 86 SLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSD 145
+LL+L +N S D F L++L + L NN ++ + S + L + +S
Sbjct: 57 TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-----KAFSPLRKLQKLYISK 111
Query: 146 NPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGS---- 201
N L I P NL SL + + + S L N+ I +GGN L S
Sbjct: 112 NHLVEIPP-----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 202 ------------------IPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGS 243
I NK++ ++ R ++LY L LG
Sbjct: 167 GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226
Query: 244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLK--DILYLN 287
N+ S L +LR L L +N+L+ +P +LK ++YL+
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 45/220 (20%)
Query: 58 LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
L L+ L + N+ P+ S L L + DN F LRN+N + + N
Sbjct: 101 LRKLQKLYISKNHLVEIPPNL---PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157
Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
L +S + L L Y+ +S+ L GI +L +L ++ + +
Sbjct: 158 PLENSGFEPGAFDGLK----LNYLRISEAKLTGI-----PKDLPETLNELHLDHNKIQAI 208
Query: 178 IPEEISNLTNLIIIYLGGNKL----NGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRL 233
E++ + L + LG N++ NGS+ L
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSF----------------------------L 240
Query: 234 TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI 273
L EL L +NK SR +PA +L L+ + L +N +T +
Sbjct: 241 PTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 89/197 (45%), Gaps = 21/197 (10%)
Query: 8 NLRNLELLVLSHNKLVGVIPTKVFN----VSTLKVFEVXXXXXXXXXXXIAGVRLPNLEV 63
+LR+LE+L LS N + I FN ++TL++F+ A V L L+
Sbjct: 86 HLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNG----AFVYLSKLKE 140
Query: 64 LRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPD-TFGNLRNLNKVTLYNNYLTS 121
L +R NN +IP + FN L L+LG+ +I + F L NL YL
Sbjct: 141 LWLR-NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR-------YLNL 192
Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181
+ +L + +L+ L +DLS N L I PG+ G L H L+ +M +
Sbjct: 193 AMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQG-LMH-LQKLWMIQSQIQVIERNA 250
Query: 182 ISNLTNLIIIYLGGNKL 198
NL +L+ I L N L
Sbjct: 251 FDNLQSLVEINLAHNNL 267
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 65/165 (39%), Gaps = 32/165 (19%)
Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICR 232
+V GIP TN I+YL N++ KLE + +++
Sbjct: 33 SVPAGIP------TNAQILYLHDNQIT---------------------KLEPGVFDSLIN 65
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSN 291
L ELY LGSN+ F +L L L LG+N+LT +P F L + L N
Sbjct: 66 LKELY---LGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV 336
LT LP IE L L + N + L L + ++
Sbjct: 123 KLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 165 EYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEG 224
+ Y+ + ++ P +L NL +YLG N+L G++P+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDS--------------- 86
Query: 225 SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDIL 284
LT+L LDLG+N+ + A F L L+ L + N+LT +P L +
Sbjct: 87 --------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLT 138
Query: 285 YLNFSSNFL 293
+L N L
Sbjct: 139 HLALDQNQL 147
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 58 LPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN 116
L NL+ L + SN G +P +F++ ++L++L+LG N + F L +L ++ +
Sbjct: 63 LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121
Query: 117 NYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169
N LT + L+ LT++ L N L I P + LS SL + Y+
Sbjct: 122 NKLTELPRGIERLTH------LTHLALDQNQLKSI-PHGAFDRLS-SLTHAYL 166
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 86/227 (37%), Gaps = 55/227 (24%)
Query: 90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLD 149
L N S +F + RNL + L++N L + ++ + L +DLSDN
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDA-----AAFTGLTLLEQLDLSDNAQL 92
Query: 150 GILPGTSVGNLSH-----------------------SLEYFYMPNCNVSGGIPEEISNLT 186
++ T+ L H +L+Y Y+ + N+ +L
Sbjct: 93 RVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLG 152
Query: 187 NLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICR-LTELYELDLGSNK 245
NL ++L GN+ IP S+P + R L L L L N
Sbjct: 153 NLTHLFLHGNR----IP---------------------SVPEHAFRGLHSLDRLLLHQNH 187
Query: 246 FSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
+R P F +L L TL L +N L+ +P L+ + YL + N
Sbjct: 188 VARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 31/190 (16%)
Query: 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRSN 69
RNL +L L N L G+ ++ L+ ++ L +L L +
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 70 NFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL 129
P + L L L DN+ +TF +L NL + L+ N + S
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPS-------- 166
Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI 189
+ ++ G+ HSL+ + +V+ P +L L+
Sbjct: 167 -------------VPEHAFRGL----------HSLDRLLLHQNHVARVHPHAFRDLGRLM 203
Query: 190 IIYLGGNKLN 199
+YL N L+
Sbjct: 204 TLYLFANNLS 213
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Query: 235 ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFL 293
L EL+L N S P F+NL +LRTL L SN L IPL F L ++ L+ S N +
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKI 116
Query: 294 TGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYL 334
L ++L L ++ N+ + L L+ L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 78/295 (26%), Positives = 121/295 (41%), Gaps = 57/295 (19%)
Query: 85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLS 144
L LEL +N S P F NL NL + L +N L L + LSN LT +D+S
Sbjct: 58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSN---LTKLDIS 112
Query: 145 DNP----LDGI------LPGTSVGN-----LSH-------SLEYFYMPNCNVSGGIPEEI 182
+N LD + L VG+ +SH SLE + CN++ E +
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 183 SNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLG 242
S+L LI++ L +N D + RL L L++
Sbjct: 173 SHLHGLIVLRLRHLNINA----------------IRDYSFK--------RLYRLKVLEIS 208
Query: 243 SNKFSRSI-PACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLE 300
+ ++ P C L +L +LS+ LT++P L +L + +LN S N ++
Sbjct: 209 HWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267
Query: 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR---LQGSIPYSIGDL 352
+ L L I + V P L L+ L V N+ L+ S+ +S+G+L
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 89/236 (37%), Gaps = 47/236 (19%)
Query: 58 LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
L NL L + N + + + L LE+GDN F L +L ++TL
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 118 YLTS-STSDLNFLS------------------SLSNCKTLTYIDLSDNP-LDGILPGTSV 157
LTS T L+ L S L +++S P LD + P
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 158 GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXX 217
G +L + +CN++ + +L L + L N PI+
Sbjct: 223 G---LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN------PIST----------- 262
Query: 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI 273
+EGS+ + + RL E+ L + + P F L LR L++ N+LT++
Sbjct: 263 ----IEGSMLHELLRLQ---EIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
YL + L+ +S+L LTY+ L+ N L LP L++ E + N S
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-- 123
Query: 178 IPEEI-SNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNIC-RLTE 235
+P+ + LTNL +YL N+L S+P + +LT
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQ-------------------------SLPKGVFDKLTN 158
Query: 236 LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
L LDL +N+ F L L+ LSL N+L S+P
Sbjct: 159 LTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVP 197
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRS 68
L NL+ LVL N+L +P VF+ T + +L NL L +
Sbjct: 108 LTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDL-D 165
Query: 69 NNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLN 127
NN ++P +F+ ++L L L DN F L +L + L NN + SD+
Sbjct: 166 NNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDIL 225
Query: 128 FLS 130
+LS
Sbjct: 226 YLS 228
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 57 RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN 116
RLP+L L ++ N G P+ AS + L+LG+N F L L + LY+
Sbjct: 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 117 NYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLD 149
N ++ S + +LT ++L+ NP +
Sbjct: 112 NQISCVMP-----GSFEHLNSLTSLNLASNPFN 139
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PLTFW 278
N+L G PN + + EL LG NK F L L+TL+L N+++ + P +F
Sbjct: 64 NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE 123
Query: 279 NLKDILYLNFSSN 291
+L + LN +SN
Sbjct: 124 HLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 185 LTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSN 244
L +L+ + L N+L G P +NK++ L +L L+L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 245 KFSRSIPACFSNLASLRTLSLGSN 268
+ S +P F +L SL +L+L SN
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVK 522
R ++L AT+ F LIG G FG VYK ++DG +VA+K
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK 69
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVK 522
R ++L AT+ F LIG G FG VYK ++DG +VA+K
Sbjct: 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALK 69
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TF 277
DN++ P RLT+L LDL +N+ + F L L LSL N+L SIP F
Sbjct: 47 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 106
Query: 278 WNLKDILYL 286
NLK + ++
Sbjct: 107 DNLKSLTHI 115
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 57 RLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115
RL L L + NN +P +F+ ++L+ L L DN F NL++L + L
Sbjct: 60 RLTQLTRLDL-DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 118
Query: 116 NNYLTSSTSDLNFLS 130
NN + SD+ +LS
Sbjct: 119 NNPWDCACSDILYLS 133
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 62 EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
+VL + N P ++L+ L+L +N + F L L +++L +N L S
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLD 149
+ N K+LT+I L +NP D
Sbjct: 101 IPR-----GAFDNLKSLTHIWLLNNPWD 123
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TF 277
DN++ P RLT+L LDL +N+ + F L L LSL N+L SIP F
Sbjct: 39 DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 278 WNLKDILYL 286
NLK + ++
Sbjct: 99 DNLKSLTHI 107
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 57 RLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115
RL L L + +N +P +F+ ++L+ L L DN F NL++L + L
Sbjct: 52 RLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110
Query: 116 NNYLTSSTSDLNFLS 130
NN + SD+ +LS
Sbjct: 111 NNPWDCACSDILYLS 125
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 62 EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
+VL + N P ++L+ L+L +N + F L L +++L +N L S
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLD 149
+ N K+LT+I L +NP D
Sbjct: 93 IPR-----GAFDNLKSLTHIWLLNNPWD 115
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 57/228 (25%)
Query: 90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP-L 148
L N S +F RNL + L++N L + ++ + L +DLSDN L
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-----AAFTGLALLEQLDLSDNAQL 92
Query: 149 DGILPGT--SVGNLS--------------------HSLEYFYMPNCNVSGGIPEE-ISNL 185
+ P T +G L +L+Y Y+ + N +P++ +L
Sbjct: 93 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDL 151
Query: 186 TNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICR-LTELYELDLGSN 244
NL ++L GN+++ S+P R L L L L N
Sbjct: 152 GNLTHLFLHGNRIS-------------------------SVPERAFRGLHSLDRLLLHQN 186
Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
+ + P F +L L TL L +N L+++P L+ + YL + N
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 31/191 (16%)
Query: 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRSN 69
RNL +L L N L + ++ L+ ++ L L L +
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 70 NFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL 129
P + L L L DN+ DTF +L NL + L+ N ++S
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-------- 166
Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI 189
+P + L HSL+ + V+ P +L L+
Sbjct: 167 ----------------------VPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLM 203
Query: 190 IIYLGGNKLNG 200
+YL N L+
Sbjct: 204 TLYLFANNLSA 214
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 88 LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP 147
LEL DN + P L+NL K+T L S + L +S+++ +++ +DL+
Sbjct: 74 LELKDNQITDLTP-----LKNLTKIT----ELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 124
Query: 148 LDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXX 207
+ + P + NL + Y+ ++ P ++ LTNL + +G N++N P+
Sbjct: 125 ITDVTPLAGLSNL----QVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTPLANL 178
Query: 208 XXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP-ACFSNL 257
DNK+ P + L L E+ L N+ S P A SNL
Sbjct: 179 SKLTTLRAD--DNKISDISP--LASLPNLIEVHLKDNQISDVSPLANLSNL 225
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 22/185 (11%)
Query: 9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRS 68
L NL L L N++ + P K N++ + E+ IAG++ +++ L + S
Sbjct: 68 LNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNVSA-IAGLQ--SIKTLDLTS 122
Query: 69 NNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF 128
P + S L +L L N + P L NL +++ NN + N
Sbjct: 123 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQV-------ND 171
Query: 129 LSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNL 188
L+ L+N LT + DN + I P S+ NL ++ + +S P ++NL+NL
Sbjct: 172 LTPLANLSKLTTLRADDNKISDISPLASLPNLIE----VHLKDNQISDVSP--LANLSNL 225
Query: 189 IIIYL 193
I+ L
Sbjct: 226 FIVTL 230
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 85/217 (39%), Gaps = 44/217 (20%)
Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
YL + L+ +S+L LTY+ L+ N L LP L++ E + N S
Sbjct: 67 YLALGGNKLHDISALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-- 123
Query: 178 IPEEI-SNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNIC-RLTE 235
+P+ + LTNL + L N+L S+P + +LT
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQ-------------------------SLPKGVFDKLTN 158
Query: 236 LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLT 294
L ELDL N+ F L L+ L L N+L S+P F L + Y+ N
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218
Query: 295 GPLPLEIENLKVLVGIDF---SVNNFSGVIPTTIGSL 328
P GI + +N SGV+ + GS+
Sbjct: 219 CTCP----------GIRYLSEWINKHSGVVRNSAGSV 245
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 34/144 (23%)
Query: 257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLP----LEIENLKVLVGIDF 312
L ++R L+LG N+L I L ++ YL + N L LP ++ NLK LV ++
Sbjct: 62 LPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVE- 118
Query: 313 SVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXXXXXXXXXGTIPVS 372
N + L L YL + +N+LQ S+P + D
Sbjct: 119 --NQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFD--------------------- 154
Query: 373 LEKLSYLEDLNLSFNKLAGEIPRG 396
KL+ L +L+LS+N+L +P G
Sbjct: 155 --KLTNLTELDLSYNQLQS-LPEG 175
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 89/228 (39%), Gaps = 57/228 (25%)
Query: 90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP-L 148
L N S +F RNL + L++N L + ++ + L +DLSDN L
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-----AAFTGLALLEQLDLSDNAQL 93
Query: 149 DGILPGT--SVGNLS--------------------HSLEYFYMPNCNVSGGIPEE-ISNL 185
+ P T +G L +L+Y Y+ + N +P++ +L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDL 152
Query: 186 TNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICR-LTELYELDLGSN 244
NL ++L GN+++ S+P R L L L L N
Sbjct: 153 GNLTHLFLHGNRIS-------------------------SVPERAFRGLHSLDRLLLHQN 187
Query: 245 KFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
+ + P F +L L TL L +N L+++P L+ + YL + N
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 31/191 (16%)
Query: 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRSN 69
RNL +L L N L + ++ L+ ++ L L L +
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 70 NFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL 129
P + L L L DN+ DTF +L NL + L+ N ++S
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-------- 167
Query: 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI 189
+P + L HSL+ + V+ P +L L+
Sbjct: 168 ----------------------VPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 190 IIYLGGNKLNG 200
+YL N L+
Sbjct: 205 TLYLFANNLSA 215
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TF 277
DN++ P RLT+L LDL +N+ + F L L LSL N+L SIP F
Sbjct: 39 DNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAF 98
Query: 278 WNLKDILYL 286
NL+ + ++
Sbjct: 99 DNLRSLTHI 107
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 57 RLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115
RL L L + NN +P +F+ ++L+ L L DN F NLR+L + L
Sbjct: 52 RLTQLTRLDL-DNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLL 110
Query: 116 NNYLTSSTSDLNFLS 130
NN + SD+ +LS
Sbjct: 111 NNPWDCACSDILYLS 125
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 226 IPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILY 285
I NI + L L L N + +PA NL++LR L L N LTS+P + + Y
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297
Query: 286 LNFSSNFLTGPLPLEIENL 304
F N +T LP E NL
Sbjct: 298 FYFFDNMVTT-LPWEFGNL 315
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 284 LYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343
LYLN N LT LP EI+NL L +D S N + +P +GS L+Y + ++ +
Sbjct: 252 LYLN--GNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYF-FDNMVT 306
Query: 344 SIPYSIGDL 352
++P+ G+L
Sbjct: 307 TLPWEFGNL 315
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVF 39
E+P EI NL NL +L LSHN+L +P ++ + LK F
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYF 298
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 58 LPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN 116
L NL+ L SN IP +F+ ++L+ L+L DN F NL++L + LYN
Sbjct: 56 LVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Query: 117 NYLTSSTSDLNFL 129
N D+ +L
Sbjct: 115 NPWDCECRDIMYL 127
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 224 GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKD 282
S+P I T+ L L +N+ ++ P F +L +L+ L SN+LT+IP F L
Sbjct: 25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82
Query: 283 ILYLNFSSNFLTGPLPLEIENLKVLVGI 310
+ L+ + N L +NLK L I
Sbjct: 83 LTQLDLNDNHLKSIPRGAFDNLKSLTHI 110
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
Query: 221 KLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWN 279
KLE + +++ L +LY SNK + F L L L L N L SIP F N
Sbjct: 47 KLEPGVFDHLVNLQQLY---FNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103
Query: 280 LKDILYLNFSSN 291
LK + ++ +N
Sbjct: 104 LKSLTHIYLYNN 115
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 20/118 (16%)
Query: 173 NVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNIC- 231
+V GIP + L +L N++ P NKL +IP +
Sbjct: 26 SVPAGIPTDKQRL------WLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFD 78
Query: 232 RLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIPLTFWN--LKDILYL 286
+LT+L +LDL N +SIP F NL SL + L +N W+ +DI+YL
Sbjct: 79 KLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNNP--------WDCECRDIMYL 127
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 15/70 (21%)
Query: 80 FNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLT 139
FN++KL+ + G F L L ++ L +N+L S + N K+LT
Sbjct: 64 FNSNKLTAIPTG----------VFDKLTQLTQLDLNDNHLKSIPR-----GAFDNLKSLT 108
Query: 140 YIDLSDNPLD 149
+I L +NP D
Sbjct: 109 HIYLYNNPWD 118
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 53 IAGVRLPNLEVLRMRSN--NFCGTIPHFIFNASKLSLLELGDNSFSGFI--PDTFGNLRN 108
+ V LP+LE L + N +F G F + L L+L SF+G I F L
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL---SFNGVITMSSNFLGLEQ 397
Query: 109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDN----PLDGILPGTSVGNLSHSL 164
L + ++ L + FLS + L Y+D+S +GI G S SL
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLS----LRNLIYLDISHTHTRVAFNGIFNGLS------SL 447
Query: 165 EYFYMP-NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLE 223
E M N +P+ + L NL + L +L P A N+L+
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Query: 224 GSIPNNIC-RLTELYELDLGSNKFSRSIP 251
S+P+ I RLT L ++ L +N + S P
Sbjct: 508 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 223 EGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
E +P+ L L LDL + + P F++L+SL+ L++ SN+L S+P
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 23/119 (19%)
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF 292
L L LD+ + F+ L+SL L + N +F NF
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN------------------SFQENF 461
Query: 293 LTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
L P L+ L +D S + PT SL LQ L + N+L+ S+P I D
Sbjct: 462 L----PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFD 515
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 225 SIPNNIC-RLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIP-LTFWNLK 281
S+PN + LT L +L LG NK +S+P F+ L SL L+L +N+L S+P F L
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT 100
Query: 282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
+ L ++N L + L L + N V L LQY+++ N
Sbjct: 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160
Query: 342 QGSIP 346
+ P
Sbjct: 161 DCTCP 165
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 39/179 (21%)
Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNIC-RLTE 235
G+ +E+++LT L YLGGNKL S+PN + +LT
Sbjct: 46 GVFDELTSLTQL---YLGGNKLQ-------------------------SLPNGVFNKLTS 77
Query: 236 LYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFL 293
L L+L +N+ +S+P F L L+ L+L +N+L S+P F L + L N L
Sbjct: 78 LTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 294 TGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352
+ L L I N + P G++YL N+ G + S G +
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSV 188
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 225 SIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIPLTFWN-LKD 282
S+P I T LDL +N +S+P F L SL L LG N+L S+P +N L
Sbjct: 21 SVPTGIPAQTTY--LDLETNSL-KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77
Query: 283 ILYLNFSSNFLTGPLPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341
+ YLN S+N L LP + + L L + + N + L L+ L + N+L
Sbjct: 78 LTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 342 QGSIPYSIGD 351
+ S+P + D
Sbjct: 137 K-SVPDGVFD 145
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 7/99 (7%)
Query: 57 RLPNLEVLRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115
+L +L L + +N ++P+ +F+ ++L L L N F L L + LY
Sbjct: 74 KLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132
Query: 116 NNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG 154
N L S + +L YI L DNP D PG
Sbjct: 133 QNQLKSVPDGV-----FDRLTSLQYIWLHDNPWDCTCPG 166
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 124/330 (37%), Gaps = 56/330 (16%)
Query: 83 SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYID 142
S+L+ L++G N+ S P+ L L + L +N L S SD F + C LT +
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTF----AFCTNLTELH 103
Query: 143 LSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSI 202
L N + I V NLI + L N L+ +
Sbjct: 104 LMSNSIQKIKNNPFVKQ--------------------------KNLITLDLSHNGLSSTK 137
Query: 203 PITXXXXXXXXXXXXADNKLEG--SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
T ++NK++ S +I + L +L+L SN+ P CF + L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197
Query: 261 -----RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL-----TGPLPLEIENLKVLVGI 310
+ LG + + L N I L+ S++ L T L L+ NL +L
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML--- 253
Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXXXXXXXXXGTIP 370
D S NN + V + L L+Y F+ YN +Q +S+ L +I
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313
Query: 371 V---------SLEKLSYLEDLNLSFNKLAG 391
+ S + L LE LN+ N + G
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFW 278
N+L N R ++L LD+G N S+ P L L+ L+L NEL+ + TF
Sbjct: 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94
Query: 279 NLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS 327
++ L+ SN + K L+ +D S N G+ T +G+
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGT 140
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 124/330 (37%), Gaps = 56/330 (16%)
Query: 83 SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYID 142
S+L+ L++G N+ S P+ L L + L +N L S SD F + C LT +
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTF----AFCTNLTELH 108
Query: 143 LSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSI 202
L N + I V NLI + L N L+ +
Sbjct: 109 LMSNSIQKIKNNPFVKQ--------------------------KNLITLDLSHNGLSSTK 142
Query: 203 PITXXXXXXXXXXXXADNKLEG--SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
T ++NK++ S +I + L +L+L SN+ P CF + L
Sbjct: 143 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 202
Query: 261 -----RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL-----TGPLPLEIENLKVLVGI 310
+ LG + + L N I L+ S++ L T L L+ NL +L
Sbjct: 203 FGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML--- 258
Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXXXXXXXXXGTIP 370
D S NN + V + L L+Y F+ YN +Q +S+ L +I
Sbjct: 259 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 318
Query: 371 V---------SLEKLSYLEDLNLSFNKLAG 391
+ S + L LE LN+ N + G
Sbjct: 319 LASLPKIDDFSFQWLKCLEHLNMEDNDIPG 348
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFW 278
N+L N R ++L LD+G N S+ P L L+ L+L NEL+ + TF
Sbjct: 40 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 99
Query: 279 NLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS 327
++ L+ SN + K L+ +D S N G+ T +G+
Sbjct: 100 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGT 145
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 80/330 (24%), Positives = 124/330 (37%), Gaps = 56/330 (16%)
Query: 83 SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYID 142
S+L+ L++G N+ S P+ L L + L +N L S SD F + C LT +
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-SQLSDKTF----AFCTNLTELH 113
Query: 143 LSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSI 202
L N + I V NLI + L N L+ +
Sbjct: 114 LMSNSIQKIKNNPFVKQ--------------------------KNLITLDLSHNGLSSTK 147
Query: 203 PITXXXXXXXXXXXXADNKLEG--SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260
T ++NK++ S +I + L +L+L SN+ P CF + L
Sbjct: 148 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 207
Query: 261 -----RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL-----TGPLPLEIENLKVLVGI 310
+ LG + + L N I L+ S++ L T L L+ NL +L
Sbjct: 208 FGLFLNNVQLGPSLTEKLCLELAN-TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML--- 263
Query: 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIXXXXXXXXXXXXXGTIP 370
D S NN + V + L L+Y F+ YN +Q +S+ L +I
Sbjct: 264 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 323
Query: 371 V---------SLEKLSYLEDLNLSFNKLAG 391
+ S + L LE LN+ N + G
Sbjct: 324 LASLPKIDDFSFQWLKCLEHLNMEDNDIPG 353
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFW 278
N+L N R ++L LD+G N S+ P L L+ L+L NEL+ + TF
Sbjct: 45 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 104
Query: 279 NLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS 327
++ L+ SN + K L+ +D S N G+ T +G+
Sbjct: 105 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN---GLSSTKLGT 150
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
Query: 256 NLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLTGP----LPLEIENLKVLVG 309
N++SL TL + N L S T + IL LN SSN LTG LP +++ L +
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH-- 458
Query: 310 IDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351
NN IP + L+ LQ L V N+L+ S+P + D
Sbjct: 459 -----NNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 10/150 (6%)
Query: 7 GNLRNLELLVLSHNKLVGVIPTKVF--NVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVL 64
L+ L+ L+L N L + N+S+L+ +V ++ VL
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 65 RMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS 124
+ SN G++ F K+ +L+L +N IP +L+ L ++ + +N L S
Sbjct: 434 NLSSNMLTGSV--FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPD 490
Query: 125 DLNFLSSLSNCKTLTYIDLSDNPLDGILPG 154
+ +L YI L DNP D PG
Sbjct: 491 GV-----FDRLTSLQYIWLHDNPWDCTCPG 515
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-T 276
+ N L GS+ C ++ LDL +N+ SIP ++L +L+ L++ SN+L S+P
Sbjct: 436 SSNMLTGSVFR--CLPPKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLKSVPDGV 492
Query: 277 FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDF---SVNNFSGVIPTTIGSL 328
F L + Y+ N P GI + +N SGV+ + GS+
Sbjct: 493 FDRLTSLQYIWLHDNPWDCTCP----------GIRYLSEWINKHSGVVRNSAGSV 537
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 64 LRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLT 120
+R+ N IP F+ KL ++L +N S PD F LR+LN + LY N +T
Sbjct: 37 IRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 8 NLRNLELLVLSHNKLVGVIPTKVFN----VSTLKVFEVXXXXXXXXXXXIAGVRLPNLEV 63
+LR+LE+L LS N LV I FN ++TL++F+ A L L
Sbjct: 57 HLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFD----NRLTTVPTQAFEYLSKLRE 111
Query: 64 LRMRSNNFCGTIPHFIFN-ASKLSLLELGDNSFSGFIPDT-FGNLRNLNKVTLYNNYLTS 121
L +R NN +IP + FN L L+LG+ +I + F L NL YL
Sbjct: 112 LWLR-NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR-------YLNL 163
Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158
+L + +L+ L ++LS N LD I PG+ G
Sbjct: 164 GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQG 200
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 80/218 (36%), Gaps = 49/218 (22%)
Query: 85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS-STSDLNFLSSLSNCKTLTYIDL 143
L +L+L N F L +LN + L++N LT+ T +LS L + L
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRE------LWL 114
Query: 144 SDNPLDGI-------LPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGN 196
+NP++ I +P +L Y+ G L NL + LG
Sbjct: 115 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG--------LVNLRYLNLGMC 166
Query: 197 KLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSN 256
L IPN + L L EL+L N+ P F
Sbjct: 167 NLK-------------------------DIPN-LTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 257 LASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFL 293
L SLR L L ++ +I F +LK + LN S N L
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 232 RLTELYELDLGSNKFSRSI-PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSS 290
R+ L LDLG K I A F L +LR L+LG L IP L + L S
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSG 187
Query: 291 NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI 349
N L P + L L + + + LK L+ L + +N L S+P+ +
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDL 245
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 64 LRMRSNNFCGTIPHFIFNA-SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
+R+ N IP F+ KL ++L +N S PD F LR+LN + LY N +T
Sbjct: 37 IRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 110/284 (38%), Gaps = 57/284 (20%)
Query: 104 GNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS 163
NL+ L+ + YL S + L L L N L ID+ +N L + +L S
Sbjct: 121 NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL------PDLPPS 174
Query: 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG--SIPITXXXXXXXXXXXXADNK 221
LE+ N N +P E+ NL L IY N L +P++ A N
Sbjct: 175 LEFIAAGN-NQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLS-------LESIVAGNN 225
Query: 222 LEGSIP--NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP----- 274
+ +P N+ LT +Y N +++P SL L++ N LT +P
Sbjct: 226 ILEELPELQNLPFLTTIY----ADNNLLKTLPDLP---PSLEALNVRDNYLTDLPELPQS 278
Query: 275 LTFWNLKD------------ILYLNFSSNFLTG--PLPLEIENLKVLVGIDFSVNNFSGV 320
LTF ++ + + YLN SSN + LP +E L V +
Sbjct: 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPR 338
Query: 321 IPTTIGSL----------KGLQYLFVGYNRLQG--SIPYSIGDL 352
+ I S + L+ L V YN L+ IP S+ DL
Sbjct: 339 LERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDL 382
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 19/157 (12%)
Query: 8 NLRNLELLVLSHNKLVGVIPTKVFN----VSTLKVFEVXXXXXXXXXXXIAGVRLPNLEV 63
+LR+LE+L LS N LV I FN ++TL++F+ A L L
Sbjct: 57 HLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFD----NRLTTVPTQAFEYLSKLRE 111
Query: 64 LRMRSNNFCGTIPHFIFN-ASKLSLLELGDNSFSGFIPDT-FGNLRNLNKVTLYNNYLTS 121
L +R NN +IP + FN L L+LG+ +I + F L NL YL
Sbjct: 112 LWLR-NNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLR-------YLNL 163
Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158
+L + +L+ L ++LS N LD I PG+ G
Sbjct: 164 GMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQG 200
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 80/218 (36%), Gaps = 49/218 (22%)
Query: 85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS-STSDLNFLSSLSNCKTLTYIDL 143
L +L+L N F L +LN + L++N LT+ T +LS L + L
Sbjct: 61 LEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRE------LWL 114
Query: 144 SDNPLDGI-------LPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGN 196
+NP++ I +P +L Y+ G L NL + LG
Sbjct: 115 RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEG--------LVNLRYLNLGMC 166
Query: 197 KLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSN 256
L IPN + L L EL+L N+ P F
Sbjct: 167 NLK-------------------------DIPN-LTALVRLEELELSGNRLDLIRPGSFQG 200
Query: 257 LASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFL 293
L SLR L L ++ +I F +LK + LN S N L
Sbjct: 201 LTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 232 RLTELYELDLGSNKFSRSI-PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSS 290
R+ L LDLG K I A F L +LR L+LG L IP L + L S
Sbjct: 129 RVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP-NLTALVRLEELELSG 187
Query: 291 NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI 349
N L P + L L + + + LK L+ L + +N L S+P+ +
Sbjct: 188 NRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLM-SLPHDL 245
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 492 DRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKV 523
+ F NL+G+G F VY+A I G+EVA+K+
Sbjct: 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKM 43
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
IDLS NPL IL S N S L++ + C + + L +L + L GN +
Sbjct: 32 IDLSFNPL-KILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
Query: 201 SIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKF-SRSIPACFSNLAS 259
P + + KL I +L L +L++ N S +PA FSNL +
Sbjct: 90 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 149
Query: 260 LRTLSLGSNELTSIPL 275
L + L N + +I +
Sbjct: 150 LVHVDLSYNYIQTITV 165
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 102/261 (39%), Gaps = 39/261 (14%)
Query: 99 IPDTFGNLRNLNKVTLYNNYL-TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSV 157
+P F NL NL V L NY+ T + +DL FL N + +D+S NP+D I
Sbjct: 140 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR--ENPQVNLSLDMSLNPIDFIQDQAFQ 197
Query: 158 GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLII--IYLGGNKLNGSIPITXXXXXXXXXX 215
G H L N N S + + NL L + + LG K ++ I
Sbjct: 198 GIKLHELT--LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI----------- 244
Query: 216 XXADNKLEGSIPNNICRLTELYELDLG-SNKFSRSIPA--CFSNLASLRTLSLGSNELTS 272
E SI +C +T + E L +N FS I C +N++++ + L
Sbjct: 245 ------FEPSIMEGLCDVT-IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 297
Query: 273 IPLTF-WNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGL 331
+P F W I+ F T LP L + ++N G I +L L
Sbjct: 298 VPKHFKWQSLSIIRCQLKQ-FPTLDLPF-------LKSLTLTMN--KGSISFKKVALPSL 347
Query: 332 QYLFVGYNRLQGSIPYSIGDL 352
YL + N L S S DL
Sbjct: 348 SYLDLSRNALSFSGCCSYSDL 368
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNG 200
IDLS NPL IL S N S L++ + C + + L +L + L GN +
Sbjct: 37 IDLSFNPL-KILKSYSFSNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 201 SIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKF-SRSIPACFSNLAS 259
P + + KL I +L L +L++ N S +PA FSNL +
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 260 LRTLSLGSNELTSIPL 275
L + L N + +I +
Sbjct: 155 LVHVDLSYNYIQTITV 170
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 71/261 (27%), Positives = 102/261 (39%), Gaps = 39/261 (14%)
Query: 99 IPDTFGNLRNLNKVTLYNNYL-TSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSV 157
+P F NL NL V L NY+ T + +DL FL N + +D+S NP+D I
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR--ENPQVNLSLDMSLNPIDFIQDQAFQ 202
Query: 158 GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLII--IYLGGNKLNGSIPITXXXXXXXXXX 215
G H L N N S + + NL L + + LG K ++ I
Sbjct: 203 GIKLHELT--LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI----------- 249
Query: 216 XXADNKLEGSIPNNICRLTELYELDLG-SNKFSRSIPA--CFSNLASLRTLSLGSNELTS 272
E SI +C +T + E L +N FS I C +N++++ + L
Sbjct: 250 ------FEPSIMEGLCDVT-IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED 302
Query: 273 IPLTF-WNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGL 331
+P F W I+ F T LP L + ++N G I +L L
Sbjct: 303 VPKHFKWQSLSIIRCQLKQ-FPTLDLPF-------LKSLTLTMN--KGSISFKKVALPSL 352
Query: 332 QYLFVGYNRLQGSIPYSIGDL 352
YL + N L S S DL
Sbjct: 353 SYLDLSRNALSFSGCCSYSDL 373
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTEL 236
GIP +++ L YL GN+ +P ++N++ + +T+L
Sbjct: 28 GIPRDVTEL------YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFL 293
L L N+ P F L SLR LSL N+++ +P F +L + +L +N L
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 263 LSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP 322
L L N+ T +P N K + ++ S+N ++ N+ L+ + S N + P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 323 TTIGSLKGLQYL 334
T LK L+ L
Sbjct: 96 RTFDGLKSLRLL 107
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 108/242 (44%), Gaps = 37/242 (15%)
Query: 53 IAGVR-LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111
I G+ L NLE L + N P + N KL+ L +G N + NL NL +
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRE 114
Query: 112 VTLYNNYLTS----------------STSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGT 155
+ L + ++ + +L+ LS LSN L Y+ ++++ + + P
Sbjct: 115 LYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIA 174
Query: 156 SVGNL-SHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPIT-XXXXXXXX 213
++ +L S SL Y + E+IS L +L ++ +N IT
Sbjct: 175 NLTDLYSLSLNYNQI----------EDISPLASLTSLHYFTAYVNQITDITPVANXTRLN 224
Query: 214 XXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI 273
+NK+ P + L++L L++G+N+ S I A +L L+ L++GSN+++ I
Sbjct: 225 SLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINAV-KDLTKLKXLNVGSNQISDI 280
Query: 274 PL 275
+
Sbjct: 281 SV 282
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 254 FSNLASLRTLSLGSNELT-------SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKV 306
FS LA +S G T +I T D LY N + + L+ P P E+EN
Sbjct: 260 FSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPTPEELENXPE 319
Query: 307 LVGIDFSVNNFSGVIPTTIGSLKGLQYLFV 336
LV +F++ P T GL ++ V
Sbjct: 320 LVKYEFNIRE-----PKTDVVFSGLGWVTV 344
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
LDL SNK +SIP L +L+ L++ SN+L S+P
Sbjct: 426 LDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSVP 460
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSN 268
NK++ SIP + +L L EL++ SN+ +S+P F L SL+ + L +N
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 498 NLIGRGGFGSVYKARIQDGMEVAVKVF 524
LIGRG +G+VYK + D VAVKVF
Sbjct: 19 ELIGRGRYGAVYKGSL-DERPVAVKVF 44
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 479 WRRFSYLELCRATDRFSEN------NLIGRGGFGSVYKARIQDGMEVAVK 522
+ FS+ EL T+ F E N +G GGFG VYK + + VAVK
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVK 60
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 479 WRRFSYLELCRATDRFSEN------NLIGRGGFGSVYKARIQDGMEVAVK 522
+ FS+ EL T+ F E N +G GGFG VYK + + VAVK
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVK 60
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 479 WRRFSYLELCRATDRFSEN------NLIGRGGFGSVYKARIQDGMEVAVK 522
+ FS+ EL T+ F E N +G GGFG VYK + + VAVK
Sbjct: 6 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVK 54
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
L L ++ GSNK + F + L+ L+L SN+L S+P
Sbjct: 169 LENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVP 210
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSN 291
LT+L L+L N+ + F L L L+L N+L SIP+ F NLK + ++ +N
Sbjct: 63 LTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
Query: 292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIP 322
P + E +L ++ V + S V P
Sbjct: 123 ------PWDCECSDILYLKNWIVQHASIVNP 147
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 62 EVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTS 121
+VL + N P + ++L+ L L N + F L L + L+ N L S
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 122 STSDLNFLSSLSNCKTLTYIDLSDNPLD 149
+ N K+LT+I L +NP D
Sbjct: 103 IP-----MGVFDNLKSLTHIYLFNNPWD 125
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF 292
L L+ L L +NK S+ P F+ L L L L N+L +P K + L N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE 132
Query: 293 LTGPLPLEIENLKVLVGIDFSVNNF--SGVIPTTIGSLKGLQYLFVGYNRL----QGSIP 346
+T L ++ ++ N SG+ +K L Y+ + + QG +P
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LP 191
Query: 347 YSIGDLIXXXXXXXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAG 391
S+ +L SL+ L+ L L LSFN ++
Sbjct: 192 PSLTELHLDGNKITKVDA------ASLKGLNNLAKLGLSFNSISA 230
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPL 297
LDL +NK + F NL +L TL L +N+++ I P F L + L S N L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS 344
P ++ K L + N + V + L + + +G N L+ S
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 494 FSENNLIGRGGFGSVYKARIQD 515
FS + +IGRGGFG VY R D
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKAD 212
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 494 FSENNLIGRGGFGSVYKARIQD 515
FS + +IGRGGFG VY R D
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKAD 212
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 15/165 (9%)
Query: 233 LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF 292
L L+ L L +NK S+ P F+ L L L L N+L +P K + L N
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE 132
Query: 293 LTGPLPLEIENLKVLVGIDFSVNNF--SGVIPTTIGSLKGLQYLFVGYNRL----QGSIP 346
+T L ++ ++ N SG+ +K L Y+ + + QG +P
Sbjct: 133 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LP 191
Query: 347 YSIGDLIXXXXXXXXXXXXXGTIPVSLEKLSYLEDLNLSFNKLAG 391
S+ +L SL+ L+ L L LSFN ++
Sbjct: 192 PSLTELHLDGNKITKVDA------ASLKGLNNLAKLGLSFNSISA 230
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 4/107 (3%)
Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPL 297
LDL +NK + F NL +L TL L +N+++ I P F L + L S N L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-L 115
Query: 298 PLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS 344
P ++ K L + N + V + L + + +G N L+ S
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC 528
FS + +IGRGGFG VY R D K++ + C
Sbjct: 191 FSVHRIIGRGGFGEVYGCRKAD----TGKMYAMKC 221
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC 528
FS + +IGRGGFG VY R D K++ + C
Sbjct: 190 FSVHRIIGRGGFGEVYGCRKAD----TGKMYAMKC 220
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 110/267 (41%), Gaps = 27/267 (10%)
Query: 58 LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNN 117
L NL+VL + N + K++ ++L N + TF L L + L +N
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDN 372
Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
LT+ ++F+ S+ + I LS N L + NL H E N +
Sbjct: 373 ALTT----IHFIPSIPD------IFLSGNKLVTLPKINLTANLIHLSE-----NRLENLD 417
Query: 178 IPEEISNLTNLIIIYLGGNKLNG-SIPITXXXXXXXXXXXXADNKLEGSIPNNICR---- 232
I + + +L I+ L N+ + S T +N L+ + +C
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477
Query: 233 -LTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNL-KDILYLNFSS 290
L+ L L L N + P FS+L +LR LSL SN LT L+ +L ++ L+ S
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV--LSHNDLPANLEILDISR 535
Query: 291 NFLTGPLPLEIENLKVLVGIDFSVNNF 317
N L P P +L VL D + N F
Sbjct: 536 NQLLAPNPDVFVSLSVL---DITHNKF 559
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 81 NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140
N L +L+LG + PD F L +L ++ LY L+ + + N K LT
Sbjct: 71 NLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY---FRNLKALTR 127
Query: 141 IDLSDNPLDGILPGTSVGNL 160
+DLS N + + S G L
Sbjct: 128 LDLSKNQIRSLYLHPSFGKL 147
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVKV 523
L+G+GGFG+V+ R+ D ++VA+KV
Sbjct: 38 LLGKGGFGTVFAGHRLTDRLQVAIKV 63
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLP 298
++L +N+ S+ FS + L +++L N LT IP +LKD NF + +L +
Sbjct: 438 INLSNNQISKFPKELFSTGSPLSSINLXGNXLTEIPKN--SLKD-ENENFKNTYLLTSID 494
Query: 299 LEIENLK------------VLVGIDFSVNNFSG--VIPTTIGSLKGL 331
L L LVGID S N+FS P +LKG
Sbjct: 495 LRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGF 541
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 219 DNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFW 278
+N ++ + L L L LG N + F+ LASL TL L N LT IP
Sbjct: 84 ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP---- 139
Query: 279 NLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVG 337
+ + +L+ L + N + ++ N ++ +G LK L+Y+ G
Sbjct: 140 --------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 81/202 (40%), Gaps = 30/202 (14%)
Query: 84 KLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS-DLNFLSSLSNCKTLTYID 142
L +L+LG NS F L +LN + L++N+LT S +LS L +
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE------LW 153
Query: 143 LSDNPLDGI----------LPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIY 192
L +NP++ I L +G L LEY +S G E + NL L +
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEY-------ISEGAFEGLFNLKYLNLGM 205
Query: 193 LGGNKLNGSIPITXXXXXXXXXXXXADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPA 252
+ P+ + N P + L+ L +L + +++ S
Sbjct: 206 CNIKDMPNLTPLV-----GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Query: 253 CFSNLASLRTLSLGSNELTSIP 274
F LASL L+L N L+S+P
Sbjct: 261 AFDGLASLVELNLAHNNLSSLP 282
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 79 IFNA-SKLSLLELGDNSFS-GFIPDTFGNLRNLNKVTLYNNYLTS-STSDLNFLSSL 132
IFN S L +L++ NSF F+PD F LRNL + L L S + N LSSL
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 16/71 (22%)
Query: 462 KRVKPPPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDG--ME 518
++VK P D + PV W + ++IG G FG V KARI +DG M+
Sbjct: 5 RKVKNNP-DPTIYPVLDWNDIKF------------QDVIGEGNFGQVLKARIKKDGLRMD 51
Query: 519 VAVKVFHLHCS 529
A+K + S
Sbjct: 52 AAIKRMKEYAS 62
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 479 WRRFSYLELCRATDRFSEN------NLIGRGGFGSVYKARIQDGMEVAVK 522
+ FS+ EL T+ F E N G GGFG VYK + + VAVK
Sbjct: 3 FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYV-NNTTVAVK 51
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 79 IFNA-SKLSLLELGDNSFS-GFIPDTFGNLRNLNKVTLYNNYLTS-STSDLNFLSSLS 133
IFN S L +L++ NSF F+PD F LRNL + L L S + N LSSL
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 79 IFNA-SKLSLLELGDNSFS-GFIPDTFGNLRNLNKVTLYNNYLTS-STSDLNFLSSLS 133
IFN S L +L++ NSF F+PD F LRNL + L L S + N LSSL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVK 522
F E LIG GGFG V+KA+ + DG +K
Sbjct: 13 FKEIELIGSGGFGQVFKAKHRIDGKTYVIK 42
>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand I
pdb|3CY2|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand Ii
Length = 314
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 17 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its
Consensus Peptide Pimtide
pdb|2BZJ|A Chain A, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru3
pdb|2BZK|B Chain B, Crystal Structure Of The Human Pim1 In Complex With Amppnp
And Pimtide
pdb|2C3I|B Chain B, Crystal Structure Of Human Pim1 In Complex With
Imidazopyridazin I
pdb|2BZH|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2OI4|X Chain X, Crystal Structure Of Human Pim1 In Complex With
Fluorinated Ruthenium Pyridocarbazole
pdb|3BWF|A Chain A, Crystal Structure Of The Human Pim1 In Complex With An
Osmium Compound
Length = 313
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 16 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Naphtho-Difuran Ligand
Length = 313
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 17 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And
The Jnk Inhibitor V
Length = 314
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 17 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With
Ly333531
Length = 312
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 16 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 17 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 68
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 31 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 82
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 43 LLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261
pdb|2BZI|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru2
Length = 313
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 16 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 67
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 58 LLGSGGFGSVYSGIRVSDNLPVAIK 82
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 467 PPNDANMPPVATWRRFSYLELCRATDRFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
P ND + +A + LE ++ L+G GGFGSVY R+ D + VA+K
Sbjct: 36 PCNDLHATKLAPGKEKEPLE-----SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 87
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 30 LLGSGGFGSVYSGIRVSDNLPVAIK 54
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 30 LLGSGGFGSVYSGIRVSDNLPVAIK 54
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 31 LLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 493 RFSENNLIGRGGFGSVYKA-RIQDGMEVAVK 522
++ L+G GGFGSVY R+ D + VA+K
Sbjct: 44 QYQVGPLLGSGGFGSVYSGIRVSDNLPVAIK 74
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 31 LLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 31 LLGSGGFGSVYSGIRVSDNLPVAIK 55
>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small
Molecule Inhibitor
pdb|3UMX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indol-3-Yl)methylene]-7-(Azepan-1-Ylmethyl)-6-
Hydroxybenzofuran- 3(2h)-One
pdb|4ENX|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
Inhibitor (2e,5z)-2-
(2-Chlorophenylimino)-5-(4-Hydroxy-3-
Nitrobenzylidene)thiazolidin-4- One
pdb|4ENY|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
(2e,5z)-2-(2-
Chlorophenylimino)-5-(4-Hydroxy-3-
Methoxybenzylidene)thiazolidin-4- One
pdb|3UMW|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indazol-3-Yl)methylene]-6-Methoxy-7-(Piperazin-1-
Ylmethyl)benzofuran- 3(2h)-One
Length = 298
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 16 LLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|B Chain B, Human Dyrk1a In Complex With Leucettine L41
pdb|4AZE|C Chain C, Human Dyrk1a In Complex With Leucettine L41
Length = 382
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 489 RATDRFSENNLIGRGGFGSVYKARIQDGME-VAVKV 523
+ DR+ ++LIG+G FG V KA + E VA+K+
Sbjct: 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKI 86
>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R01|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R02|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R04|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3VBQ|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBT|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBV|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBW|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBX|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBY|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VC4|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
Length = 299
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 16 LLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JY0|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JYA|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
Length = 294
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 16 LLGSGGFGSVYSGIRVSDNLPVAIK 40
>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target
Of Aberrant Somatic Hypermutations In Diffuse Large Cell
Lymphoma
pdb|1YXT|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amppnp
pdb|1YXU|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|B Chain B, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|C Chain C, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|D Chain D, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXV|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
3,4-Dihydroxy-1- Methylquinolin-2(1h)-One
pdb|1YXX|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
(3e)-3-[(4- Hydroxyphenyl)imino]-1h-Indol-2(3h)-One
pdb|2O3P|A Chain A, Crystal Structure Of Pim1 With Quercetin
pdb|2O63|A Chain A, Crystal Structure Of Pim1 With Myricetin
pdb|2O64|A Chain A, Crystal Structure Of Pim1 With Quercetagetin
pdb|2O65|A Chain A, Crystal Structure Of Pim1 With Pentahydroxyflavone
Length = 293
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 15 LLGSGGFGSVYSGIRVSDNLPVAIK 39
>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|B Chain B, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|C Chain C, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2VX3|D Chain D, Crystal Structure Of The Human Dual Specificity Tyrosine-
Phosphorylation-Regulated Kinase 1a
pdb|2WO6|A Chain A, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
pdb|2WO6|B Chain B, Human Dual-Specificity Tyrosine-Phosphorylation-Regulated
Kinase 1a In Complex With A Consensus Substrate Peptide
Length = 382
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 489 RATDRFSENNLIGRGGFGSVYKARIQDGME-VAVKV 523
+ DR+ ++LIG+G FG V KA + E VA+K+
Sbjct: 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKI 86
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 15 LLGSGGFGSVYSGIRVSDNLPVAIK 39
>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 14 LLGSGGFGSVYSGIRVSDNLPVAIK 38
>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|B Chain B, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|C Chain C, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|D Chain D, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
Length = 273
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors
Length = 273
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 11 LLGSGGFGSVYSGIRVSDNLPVAIK 35
>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546
Length = 308
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 499 LIGRGGFGSVYKA-RIQDGMEVAVK 522
L+G GGFGSVY R+ D + VA+K
Sbjct: 38 LLGSGGFGSVYSGIRVSDNLPVAIK 62
>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|B Chain B, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|C Chain C, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANQ|D Chain D, Human Dyrk1aINHIBITOR COMPLEX
pdb|3ANR|A Chain A, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|B Chain B, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|C Chain C, Human Dyrk1aHARMINE COMPLEX
pdb|3ANR|D Chain D, Human Dyrk1aHARMINE COMPLEX
Length = 368
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 489 RATDRFSENNLIGRGGFGSVYKARIQDGME-VAVKV 523
+ DR+ ++LIG+G FG V KA + E VA+K+
Sbjct: 32 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKI 67
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 232 RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274
T+L +L L N+ ++ F L L+ L+L +N+L S+P
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVP 339
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 51
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 23 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 52
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 51
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 51
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 51
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 494 FSENNLIGRGGFGSVYKAR 512
F E LIG GGFG V+KA+
Sbjct: 14 FKEIELIGSGGFGQVFKAK 32
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 51
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 35 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 64
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 50 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 79
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 51
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 41 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 70
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 30 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 59
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 22 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 51
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 27 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 56
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 34 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 63
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 85
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 56 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 85
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 26 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 55
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 34 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 63
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 58 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 87
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 60 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 89
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
+L ST+++ +SSLS + L + L N + I +V + L Y ++SG
Sbjct: 52 HLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG- 110
Query: 178 IPEEISNLTNLIIIYLGGNKL 198
I L NL ++Y+ NK+
Sbjct: 111 ----IEKLVNLRVLYMSNNKI 127
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGME-VAVK 522
+++ +IG G FG VY+A++ D E VA+K
Sbjct: 101 YTDTKVIGNGSFGVVYQAKLCDSGELVAIK 130
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 118 YLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG 177
+L ST+++ +SSLS + L + L N + I +V + L Y ++SG
Sbjct: 53 HLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG- 111
Query: 178 IPEEISNLTNLIIIYLGGNKL 198
I L NL ++Y+ NK+
Sbjct: 112 ----IEKLVNLRVLYMSNNKI 128
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 14 LLVLSHNKLVGV----IPTKVFNVSTLKVFEVXXXXXXXXXXXIAGVRLPNLEVLRMRSN 69
LL LSHN L + PT++ N+ +L + A V +PNL L + SN
Sbjct: 43 LLDLSHNNLSRLRAEWTPTRLTNLHSL----LLSHNHLNFISSEAFVPVPNLRYLDLSSN 98
Query: 70 NFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF 128
+ T+ F+F + L +L L +N + F ++ L K+ L N ++ +L
Sbjct: 99 HL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL-- 155
Query: 129 LSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL 160
+ + L +DLS N L LP T + L
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKL 186
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 42/111 (37%), Gaps = 3/111 (2%)
Query: 238 ELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGP 296
L+L SNK F L L LSL N++ S+P F L + L N L
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS- 90
Query: 297 LPLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIP 346
LP + + L L + N V L LQ +++ N S P
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 494 FSENNLIGRGGFGSVYKARIQDGMEVAVK 522
++ +IG G FG V++A++ + EVA+K
Sbjct: 42 YTNCKVIGNGSFGVVFQAKLVESDEVAIK 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,008,481
Number of Sequences: 62578
Number of extensions: 595763
Number of successful extensions: 2057
Number of sequences better than 100.0: 169
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 1476
Number of HSP's gapped (non-prelim): 392
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)