Query 045304
Match_columns 540
No_of_seqs 538 out of 4552
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 11:53:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045304.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045304hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-60 2.5E-65 530.0 38.5 512 2-527 180-726 (968)
2 PLN00113 leucine-rich repeat r 100.0 9E-50 1.9E-54 443.1 29.8 407 2-417 156-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.7E-39 3.7E-44 308.4 8.5 397 11-416 53-455 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.6E-39 3.5E-44 308.5 5.6 373 11-393 79-455 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1E-36 2.2E-41 291.8 -4.7 373 6-394 3-379 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 3.4E-35 7.5E-40 281.3 -4.1 372 31-417 4-379 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 1.7E-36 3.7E-41 275.9 -15.0 391 2-413 83-541 (565)
8 KOG0472 Leucine-rich repeat pr 100.0 3.6E-34 7.9E-39 260.8 -16.4 387 4-414 62-519 (565)
9 KOG0618 Serine/threonine phosp 100.0 2.8E-32 6.1E-37 272.8 -7.2 246 161-412 240-488 (1081)
10 PLN03210 Resistant to P. syrin 99.9 2.6E-25 5.5E-30 247.7 25.6 338 4-364 552-904 (1153)
11 KOG0618 Serine/threonine phosp 99.9 5.6E-29 1.2E-33 249.3 -3.7 245 135-388 240-487 (1081)
12 PLN03210 Resistant to P. syrin 99.9 1.5E-24 3.3E-29 241.6 26.2 342 26-389 550-905 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.3E-25 7.2E-30 202.3 -2.3 365 10-387 67-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 4.1E-22 8.9E-27 206.4 16.8 264 11-349 202-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 9.8E-22 2.1E-26 203.7 16.9 264 60-373 202-465 (788)
16 KOG4237 Extracellular matrix p 99.9 7.5E-24 1.6E-28 193.5 -3.9 353 2-363 82-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.5E-20 3.3E-25 196.1 11.0 203 10-247 178-380 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.5E-20 7.7E-25 193.4 11.0 246 35-342 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 3.4E-20 7.4E-25 180.3 -2.0 89 301-389 217-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 5.6E-20 1.2E-24 178.8 -1.1 62 87-149 2-64 (319)
21 KOG0617 Ras suppressor protein 99.7 7.6E-20 1.6E-24 148.4 -4.4 155 183-342 30-186 (264)
22 KOG0617 Ras suppressor protein 99.7 1.6E-18 3.4E-23 140.9 -3.3 162 162-328 33-195 (264)
23 PLN03150 hypothetical protein; 99.6 1.5E-14 3.2E-19 151.1 10.6 118 306-425 419-538 (623)
24 PLN03150 hypothetical protein; 99.3 4.9E-12 1.1E-16 132.3 10.2 113 282-394 419-532 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 9.9E-14 2.2E-18 133.6 -4.3 167 168-342 81-247 (722)
26 KOG1187 Serine/threonine prote 99.3 3.3E-12 7E-17 124.0 5.7 63 478-540 61-123 (361)
27 KOG3207 Beta-tubulin folding c 99.3 4.9E-13 1.1E-17 125.0 -0.2 210 80-294 118-339 (505)
28 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.4E-18 133.3 -4.6 193 186-387 75-270 (722)
29 COG4886 Leucine-rich repeat (L 99.3 6.5E-12 1.4E-16 125.6 6.6 178 210-394 116-294 (394)
30 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.3E-16 124.1 6.9 185 182-373 112-297 (394)
31 KOG4658 Apoptotic ATPase [Sign 99.2 3.1E-11 6.6E-16 129.0 6.3 132 7-147 520-653 (889)
32 KOG3207 Beta-tubulin folding c 99.1 5.8E-12 1.3E-16 117.9 -0.4 208 183-391 118-340 (505)
33 KOG1259 Nischarin, modulator o 99.1 1.1E-11 2.3E-16 110.5 0.7 135 254-393 280-415 (490)
34 KOG1909 Ran GTPase-activating 99.1 4.6E-12 9.9E-17 115.4 -1.8 183 207-389 89-310 (382)
35 PF14580 LRR_9: Leucine-rich r 99.1 3.8E-11 8.3E-16 102.7 2.7 107 8-120 17-126 (175)
36 KOG1909 Ran GTPase-activating 99.1 3.6E-12 7.7E-17 116.1 -5.2 135 232-366 155-311 (382)
37 KOG4658 Apoptotic ATPase [Sign 99.1 1.3E-10 2.8E-15 124.2 5.4 259 8-273 543-809 (889)
38 KOG1259 Nischarin, modulator o 99.0 8.7E-11 1.9E-15 104.8 0.9 130 185-319 283-413 (490)
39 PF14580 LRR_9: Leucine-rich r 99.0 3.7E-10 8E-15 96.6 4.7 125 232-384 17-147 (175)
40 PF13855 LRR_8: Leucine rich r 98.9 2E-09 4.2E-14 75.6 3.9 61 10-71 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.8 3.6E-10 7.7E-15 113.2 -1.1 246 57-322 70-322 (414)
42 KOG0531 Protein phosphatase 1, 98.8 5E-10 1.1E-14 112.2 -0.6 268 58-346 48-322 (414)
43 PF13855 LRR_8: Leucine rich r 98.8 3.9E-09 8.4E-14 74.1 3.7 59 35-94 2-60 (61)
44 KOG2120 SCF ubiquitin ligase, 98.6 4.9E-10 1.1E-14 100.0 -8.2 179 60-243 186-372 (419)
45 KOG3653 Transforming growth fa 98.5 2.4E-07 5.3E-12 88.3 5.7 37 498-538 216-252 (534)
46 KOG1859 Leucine-rich repeat pr 98.4 4.2E-09 9.1E-14 105.0 -6.9 180 203-391 102-293 (1096)
47 KOG1859 Leucine-rich repeat pr 98.4 7.9E-09 1.7E-13 103.1 -6.5 157 3-174 102-291 (1096)
48 KOG2982 Uncharacterized conser 98.4 8.5E-08 1.8E-12 86.0 0.3 177 106-294 70-262 (418)
49 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.9E-13 91.0 -5.4 181 11-197 186-374 (419)
50 KOG4579 Leucine-rich repeat (L 98.3 3.3E-08 7.1E-13 78.2 -3.9 60 305-366 77-136 (177)
51 COG5238 RNA1 Ran GTPase-activa 98.2 1.4E-07 3E-12 83.5 -1.7 87 9-95 29-132 (388)
52 KOG0196 Tyrosine kinase, EPH ( 98.2 9.8E-07 2.1E-11 89.3 3.7 60 480-539 608-681 (996)
53 KOG2982 Uncharacterized conser 98.1 2.7E-07 5.9E-12 82.8 -1.2 229 11-242 46-287 (418)
54 KOG4579 Leucine-rich repeat (L 98.1 8.6E-08 1.9E-12 75.9 -4.0 130 164-297 29-162 (177)
55 COG5238 RNA1 Ran GTPase-activa 98.0 6.1E-07 1.3E-11 79.5 -1.2 161 206-366 88-285 (388)
56 PF12799 LRR_4: Leucine Rich r 98.0 5.6E-06 1.2E-10 53.0 3.3 36 11-47 2-37 (44)
57 PRK15386 type III secretion pr 98.0 3.2E-05 6.9E-10 74.9 8.7 57 182-244 48-104 (426)
58 KOG2052 Activin A type IB rece 97.9 1.5E-05 3.3E-10 75.8 6.0 29 497-526 216-244 (513)
59 PRK15386 type III secretion pr 97.9 5.3E-05 1.1E-09 73.4 8.4 17 105-121 50-66 (426)
60 KOG3665 ZYG-1-like serine/thre 97.9 4.6E-06 1E-10 87.5 1.3 138 34-178 122-266 (699)
61 PF12799 LRR_4: Leucine Rich r 97.8 1.6E-05 3.4E-10 50.9 2.6 34 260-293 3-36 (44)
62 KOG1644 U2-associated snRNP A' 97.8 4.4E-05 9.6E-10 65.1 5.8 84 35-121 43-127 (233)
63 PF13306 LRR_5: Leucine rich r 97.8 8.3E-05 1.8E-09 61.3 7.5 106 5-116 7-112 (129)
64 KOG0193 Serine/threonine prote 97.8 1.2E-05 2.7E-10 79.4 2.5 50 481-539 388-439 (678)
65 KOG1644 U2-associated snRNP A' 97.7 5.6E-05 1.2E-09 64.5 5.7 82 211-294 43-126 (233)
66 KOG4341 F-box protein containi 97.7 6.8E-07 1.5E-11 84.1 -7.4 279 11-292 139-437 (483)
67 KOG3665 ZYG-1-like serine/thre 97.6 1.1E-05 2.5E-10 84.6 0.2 108 58-173 121-231 (699)
68 PLN03224 probable serine/threo 97.6 4.9E-05 1.1E-09 77.2 3.9 47 490-536 143-206 (507)
69 KOG1025 Epidermal growth facto 97.5 0.00014 3E-09 74.7 6.2 44 496-539 700-749 (1177)
70 KOG1026 Nerve growth factor re 97.5 2.9E-05 6.2E-10 80.1 0.8 43 498-540 492-541 (774)
71 PF13306 LRR_5: Leucine rich r 97.4 0.00057 1.2E-08 56.2 7.1 37 230-267 8-44 (129)
72 KOG4341 F-box protein containi 97.3 7.1E-06 1.5E-10 77.4 -6.0 298 34-334 138-457 (483)
73 KOG0658 Glycogen synthase kina 97.2 0.0003 6.6E-09 65.6 4.0 36 494-529 26-62 (364)
74 KOG2739 Leucine-rich acidic nu 97.2 0.00013 2.8E-09 65.1 1.0 93 26-121 35-130 (260)
75 KOG2739 Leucine-rich acidic nu 97.1 0.00021 4.6E-09 63.8 2.0 106 7-115 40-151 (260)
76 PRK09188 serine/threonine prot 97.0 0.00053 1.1E-08 66.7 3.3 51 489-539 15-72 (365)
77 KOG0192 Tyrosine kinase specif 96.9 0.00062 1.4E-08 66.2 3.3 41 498-539 47-90 (362)
78 KOG2123 Uncharacterized conser 96.9 3.6E-05 7.8E-10 68.9 -5.2 99 209-311 18-123 (388)
79 KOG0580 Serine/threonine prote 96.7 0.0011 2.5E-08 58.3 2.9 50 491-540 21-74 (281)
80 PLN03225 Serine/threonine-prot 96.6 0.0031 6.8E-08 65.8 5.5 37 490-526 130-171 (566)
81 KOG2123 Uncharacterized conser 96.5 6.4E-05 1.4E-09 67.3 -6.3 106 32-142 17-123 (388)
82 PHA02988 hypothetical protein; 96.4 0.0032 7E-08 59.8 4.4 55 479-539 12-69 (283)
83 cd05104 PTKc_Kit Catalytic dom 96.4 0.0021 4.5E-08 63.9 2.8 47 493-539 36-89 (375)
84 KOG1006 Mitogen-activated prot 96.3 0.0016 3.4E-08 58.3 1.4 52 481-539 60-113 (361)
85 KOG4236 Serine/threonine prote 96.2 0.003 6.4E-08 62.0 2.7 43 497-539 569-614 (888)
86 cd05144 RIO2_C RIO kinase fami 96.2 0.0053 1.2E-07 54.8 4.3 33 494-526 17-49 (198)
87 PTZ00284 protein kinase; Provi 96.2 0.0021 4.6E-08 65.9 1.8 42 485-526 122-164 (467)
88 KOG0201 Serine/threonine prote 96.2 0.0046 9.9E-08 59.4 3.6 35 494-528 15-50 (467)
89 KOG0199 ACK and related non-re 96.1 0.0049 1.1E-07 62.7 3.5 51 482-539 107-162 (1039)
90 KOG0194 Protein tyrosine kinas 96.1 0.0031 6.8E-08 62.8 2.1 42 498-539 163-212 (474)
91 cd05105 PTKc_PDGFR_alpha Catal 96.0 0.0047 1E-07 61.8 3.2 47 493-539 38-91 (400)
92 cd07877 STKc_p38alpha_MAPK14 C 96.0 0.0045 9.8E-08 60.7 3.0 45 482-526 7-52 (345)
93 PLN00034 mitogen-activated pro 96.0 0.0044 9.4E-08 61.1 2.7 43 497-539 79-123 (353)
94 cd06639 STKc_myosinIIIB Cataly 95.9 0.0036 7.7E-08 59.7 1.8 45 482-526 12-57 (291)
95 cd05106 PTKc_CSF-1R Catalytic 95.9 0.0046 1E-07 61.4 2.6 47 493-539 39-92 (374)
96 KOG1947 Leucine rich repeat pr 95.9 0.00072 1.6E-08 69.8 -3.3 39 135-174 268-307 (482)
97 PF00560 LRR_1: Leucine Rich R 95.9 0.0033 7.1E-08 33.3 0.8 20 11-31 1-20 (22)
98 KOG1947 Leucine rich repeat pr 95.9 0.00049 1.1E-08 71.0 -4.6 113 33-149 187-308 (482)
99 KOG1095 Protein tyrosine kinas 95.9 0.0051 1.1E-07 66.5 2.8 43 497-539 697-746 (1025)
100 cd05107 PTKc_PDGFR_beta Cataly 95.9 0.0053 1.2E-07 61.4 2.7 46 494-539 39-91 (401)
101 cd06638 STKc_myosinIIIA Cataly 95.8 0.0045 9.8E-08 58.8 2.0 58 481-539 7-65 (286)
102 KOG0600 Cdc2-related protein k 95.8 0.0051 1.1E-07 60.1 2.1 35 494-528 119-154 (560)
103 PTZ00283 serine/threonine prot 95.8 0.0049 1.1E-07 63.6 2.1 50 490-539 30-82 (496)
104 KOG0663 Protein kinase PITSLRE 95.7 0.0038 8.3E-08 57.8 0.9 35 492-526 76-111 (419)
105 TIGR01982 UbiB 2-polyprenylphe 95.7 0.0096 2.1E-07 60.0 3.8 34 493-527 119-152 (437)
106 PF03109 ABC1: ABC1 family; I 95.7 0.0028 6E-08 51.0 -0.1 36 492-528 12-47 (119)
107 KOG1094 Discoidin domain recep 95.6 0.007 1.5E-07 60.3 2.5 44 497-540 543-587 (807)
108 cd06656 STKc_PAK3 Catalytic do 95.6 0.011 2.4E-07 56.5 3.7 48 492-539 19-67 (297)
109 KOG0197 Tyrosine kinases [Sign 95.6 0.0079 1.7E-07 59.2 2.6 41 498-539 212-252 (468)
110 PTZ00263 protein kinase A cata 95.4 0.01 2.3E-07 57.7 2.7 48 492-539 18-69 (329)
111 PTZ00036 glycogen synthase kin 95.4 0.013 2.9E-07 59.4 3.6 36 491-526 65-101 (440)
112 cd07878 STKc_p38beta_MAPK11 Ca 95.3 0.016 3.4E-07 56.8 3.8 37 490-526 13-50 (343)
113 cd06636 STKc_MAP4K4_6 Catalyti 95.3 0.013 2.8E-07 55.5 3.1 45 482-526 6-51 (282)
114 cd06614 STKc_PAK Catalytic dom 95.2 0.014 3.1E-07 55.4 3.1 50 489-539 16-66 (286)
115 smart00090 RIO RIO-like kinase 95.2 0.021 4.5E-07 52.5 3.9 34 494-527 30-65 (237)
116 KOG0577 Serine/threonine prote 95.2 0.0091 2E-07 59.6 1.5 46 494-539 28-77 (948)
117 cd06657 STKc_PAK4 Catalytic do 95.1 0.016 3.6E-07 55.2 3.2 42 498-539 26-68 (292)
118 KOG0591 NIMA (never in mitosis 95.1 0.0036 7.7E-08 56.6 -1.4 42 498-539 25-69 (375)
119 KOG4250 TANK binding protein k 95.1 0.0056 1.2E-07 62.4 -0.3 42 498-539 19-62 (732)
120 cd06659 STKc_PAK6 Catalytic do 95.0 0.018 3.8E-07 55.2 3.1 42 498-539 27-69 (297)
121 cd06655 STKc_PAK2 Catalytic do 95.0 0.019 4.2E-07 54.9 3.3 47 493-539 20-67 (296)
122 cd06618 PKc_MKK7 Catalytic dom 95.0 0.021 4.5E-07 54.6 3.5 35 493-527 16-51 (296)
123 cd05596 STKc_ROCK Catalytic do 95.0 0.01 2.2E-07 58.8 1.4 37 490-526 41-78 (370)
124 cd06607 STKc_TAO Catalytic dom 95.0 0.018 4E-07 55.3 3.1 47 493-539 16-66 (307)
125 KOG0575 Polo-like serine/threo 94.9 0.02 4.4E-07 57.4 3.2 33 494-526 20-53 (592)
126 cd06647 STKc_PAK_I Catalytic d 94.9 0.023 4.9E-07 54.3 3.5 47 493-539 20-67 (293)
127 PF00560 LRR_1: Leucine Rich R 94.9 0.013 2.7E-07 31.0 0.9 11 37-47 3-13 (22)
128 cd06654 STKc_PAK1 Catalytic do 94.9 0.025 5.4E-07 54.1 3.6 47 493-539 21-68 (296)
129 KOG0574 STE20-like serine/thre 94.8 0.0034 7.4E-08 57.1 -2.2 44 494-539 35-79 (502)
130 cd05621 STKc_ROCK2 Catalytic d 94.8 0.016 3.5E-07 57.4 2.3 38 489-526 40-78 (370)
131 KOG0581 Mitogen-activated prot 94.8 0.028 6.1E-07 53.0 3.6 52 481-539 75-128 (364)
132 PF08693 SKG6: Transmembrane a 94.8 0.051 1.1E-06 33.2 3.4 28 436-463 12-39 (40)
133 cd05055 PTKc_PDGFR Catalytic d 94.8 0.017 3.6E-07 55.5 2.2 48 492-539 35-89 (302)
134 PTZ00426 cAMP-dependent protei 94.7 0.019 4.1E-07 56.2 2.5 34 493-526 31-66 (340)
135 PRK04750 ubiB putative ubiquin 94.7 0.035 7.6E-07 57.0 4.5 35 492-527 120-155 (537)
136 cd05622 STKc_ROCK1 Catalytic d 94.7 0.017 3.7E-07 57.3 2.1 43 484-526 35-78 (371)
137 cd06644 STKc_STK10_LOK Catalyt 94.7 0.022 4.8E-07 54.3 2.8 42 498-539 18-60 (292)
138 cd07879 STKc_p38delta_MAPK13 C 94.7 0.027 5.9E-07 55.1 3.5 35 492-526 15-50 (342)
139 KOG0605 NDR and related serine 94.7 0.023 5.1E-07 56.1 2.8 39 490-528 139-178 (550)
140 cd07880 STKc_p38gamma_MAPK12 C 94.6 0.026 5.5E-07 55.4 3.2 37 490-526 13-50 (343)
141 cd07876 STKc_JNK2 Catalytic do 94.6 0.026 5.6E-07 55.7 3.2 49 491-539 20-71 (359)
142 cd06635 STKc_TAO1 Catalytic do 94.6 0.026 5.7E-07 54.5 3.1 46 494-539 27-76 (317)
143 cd05053 PTKc_FGFR Catalytic do 94.6 0.018 3.8E-07 55.0 1.8 48 492-539 12-66 (293)
144 cd06648 STKc_PAK_II Catalytic 94.6 0.034 7.3E-07 52.8 3.7 46 494-539 21-67 (285)
145 KOG4257 Focal adhesion tyrosin 94.4 0.027 5.8E-07 56.8 2.7 44 496-539 393-442 (974)
146 cd05101 PTKc_FGFR2 Catalytic d 94.4 0.026 5.6E-07 54.2 2.5 47 493-539 16-71 (304)
147 cd07875 STKc_JNK1 Catalytic do 94.2 0.043 9.2E-07 54.3 3.6 36 491-526 23-59 (364)
148 KOG4278 Protein tyrosine kinas 94.1 0.023 5E-07 57.2 1.4 45 494-539 269-314 (1157)
149 KOG0694 Serine/threonine prote 94.1 0.057 1.2E-06 55.2 4.1 38 491-528 367-405 (694)
150 cd06658 STKc_PAK5 Catalytic do 94.0 0.04 8.7E-07 52.6 3.0 42 498-539 28-70 (292)
151 cd07874 STKc_JNK3 Catalytic do 94.0 0.042 9.2E-07 54.1 3.2 37 490-526 15-52 (355)
152 KOG1035 eIF-2alpha kinase GCN2 93.9 0.019 4.1E-07 62.4 0.5 40 488-527 475-515 (1351)
153 KOG0198 MEKK and related serin 93.8 0.046 1E-06 51.8 2.9 44 496-539 21-65 (313)
154 cd07865 STKc_CDK9 Catalytic do 93.8 0.058 1.2E-06 51.8 3.7 34 493-526 13-47 (310)
155 PF13504 LRR_7: Leucine rich r 93.7 0.036 7.9E-07 27.1 1.1 14 259-272 2-15 (17)
156 KOG1989 ARK protein kinase fam 93.6 0.045 9.7E-07 57.4 2.5 44 496-539 41-85 (738)
157 KOG4308 LRR-containing protein 93.6 0.00046 1E-08 69.5 -11.7 92 181-272 110-218 (478)
158 cd05098 PTKc_FGFR1 Catalytic d 93.5 0.05 1.1E-06 52.3 2.7 47 493-539 19-74 (307)
159 KOG4308 LRR-containing protein 93.5 0.0003 6.6E-09 70.8 -13.1 184 109-293 89-302 (478)
160 KOG1027 Serine/threonine prote 93.4 0.02 4.3E-07 59.6 -0.3 34 493-527 510-544 (903)
161 cd07851 STKc_p38 Catalytic dom 93.4 0.054 1.2E-06 53.1 2.7 37 490-526 13-50 (343)
162 PHA02882 putative serine/threo 93.4 0.066 1.4E-06 51.1 3.2 31 494-524 14-48 (294)
163 cd07850 STKc_JNK Catalytic dom 93.3 0.065 1.4E-06 52.7 3.2 37 490-526 14-51 (353)
164 cd06633 STKc_TAO3 Catalytic do 93.2 0.076 1.6E-06 51.2 3.4 33 494-526 23-56 (313)
165 KOG1166 Mitotic checkpoint ser 93.1 0.062 1.3E-06 58.3 2.8 36 491-526 697-732 (974)
166 cd05099 PTKc_FGFR4 Catalytic d 93.1 0.061 1.3E-06 51.9 2.5 47 493-539 13-68 (314)
167 KOG0032 Ca2+/calmodulin-depend 93.1 0.08 1.7E-06 52.2 3.3 42 498-539 41-86 (382)
168 cd06634 STKc_TAO2 Catalytic do 92.7 0.065 1.4E-06 51.6 2.0 33 494-526 17-50 (308)
169 smart00369 LRR_TYP Leucine-ric 92.6 0.11 2.5E-06 28.6 2.1 21 34-55 2-22 (26)
170 smart00370 LRR Leucine-rich re 92.6 0.11 2.5E-06 28.6 2.1 21 34-55 2-22 (26)
171 PRK09605 bifunctional UGMP fam 92.5 0.18 3.8E-06 52.7 5.1 35 488-523 329-363 (535)
172 PHA03209 serine/threonine kina 92.2 0.16 3.4E-06 50.1 4.1 36 490-525 64-100 (357)
173 COG0661 AarF Predicted unusual 92.2 0.12 2.5E-06 52.8 3.2 36 492-528 126-161 (517)
174 PHA03212 serine/threonine kina 92.1 0.12 2.6E-06 51.6 3.2 34 492-525 92-126 (391)
175 KOG0598 Ribosomal protein S6 k 92.0 0.084 1.8E-06 49.9 1.7 37 491-527 24-61 (357)
176 PRK10359 lipopolysaccharide co 91.8 0.14 3E-06 46.3 2.9 37 491-528 30-66 (232)
177 cd05100 PTKc_FGFR3 Catalytic d 91.3 0.15 3.2E-06 49.7 2.8 45 495-539 15-68 (334)
178 KOG1163 Casein kinase (serine/ 91.3 0.27 5.8E-06 43.9 3.9 34 494-527 17-51 (341)
179 KOG0473 Leucine-rich repeat pr 91.0 0.0048 1E-07 54.1 -6.8 93 49-149 32-124 (326)
180 PHA03211 serine/threonine kina 91.0 0.18 3.9E-06 51.4 3.2 32 493-524 170-202 (461)
181 KOG0473 Leucine-rich repeat pr 91.0 0.0049 1.1E-07 54.1 -6.8 88 29-120 37-124 (326)
182 KOG0660 Mitogen-activated prot 90.2 0.12 2.6E-06 48.7 1.0 30 496-525 26-56 (359)
183 KOG0984 Mitogen-activated prot 90.1 0.18 3.9E-06 43.9 1.9 29 498-526 52-81 (282)
184 smart00370 LRR Leucine-rich re 90.1 0.27 6E-06 27.0 2.0 19 258-276 2-20 (26)
185 smart00369 LRR_TYP Leucine-ric 90.1 0.27 6E-06 27.0 2.0 19 258-276 2-20 (26)
186 PTZ00266 NIMA-related protein 89.8 0.16 3.4E-06 55.9 1.6 49 491-539 12-63 (1021)
187 KOG4721 Serine/threonine prote 89.7 0.15 3.3E-06 51.1 1.2 38 481-526 120-157 (904)
188 PHA03390 pk1 serine/threonine- 89.2 0.68 1.5E-05 43.4 5.3 42 485-526 7-51 (267)
189 PTZ00267 NIMA-related protein 89.0 0.29 6.4E-06 50.3 2.9 46 494-539 69-116 (478)
190 KOG0200 Fibroblast/platelet-de 88.7 0.32 7E-06 51.5 3.0 42 498-539 302-352 (609)
191 PHA03207 serine/threonine kina 88.6 0.36 7.9E-06 48.2 3.2 34 493-526 93-129 (392)
192 KOG2345 Serine/threonine prote 88.6 0.16 3.5E-06 45.5 0.5 43 497-539 26-69 (302)
193 KOG0607 MAP kinase-interacting 88.4 0.29 6.4E-06 45.5 2.1 52 483-539 74-126 (463)
194 KOG1167 Serine/threonine prote 88.4 0.17 3.7E-06 48.6 0.6 39 490-528 34-76 (418)
195 KOG0667 Dual-specificity tyros 87.9 0.54 1.2E-05 48.0 3.8 30 497-526 191-221 (586)
196 KOG0583 Serine/threonine prote 87.0 0.71 1.5E-05 45.5 3.9 35 492-526 17-52 (370)
197 KOG0578 p21-activated serine/t 86.8 0.68 1.5E-05 46.5 3.7 33 496-528 277-310 (550)
198 KOG3864 Uncharacterized conser 86.5 0.1 2.2E-06 45.2 -1.9 64 131-194 120-184 (221)
199 KOG0582 Ste20-like serine/thre 86.4 0.64 1.4E-05 45.4 3.1 31 498-528 32-63 (516)
200 KOG1165 Casein kinase (serine/ 86.3 0.52 1.1E-05 44.2 2.4 32 493-524 29-61 (449)
201 KOG1164 Casein kinase (serine/ 86.0 0.79 1.7E-05 44.4 3.7 34 493-526 19-54 (322)
202 KOG0579 Ste20-like serine/thre 85.3 0.14 3E-06 52.0 -1.9 41 500-540 40-81 (1187)
203 KOG4279 Serine/threonine prote 83.9 0.82 1.8E-05 47.3 2.8 42 497-538 580-622 (1226)
204 KOG0615 Serine/threonine prote 83.4 1.1 2.5E-05 43.3 3.3 31 497-527 177-208 (475)
205 KOG0611 Predicted serine/threo 83.2 0.44 9.5E-06 45.8 0.5 35 499-533 60-95 (668)
206 KOG0986 G protein-coupled rece 83.1 0.17 3.7E-06 49.3 -2.2 36 492-527 185-221 (591)
207 KOG3864 Uncharacterized conser 82.9 0.18 3.9E-06 43.7 -1.9 90 26-116 93-185 (221)
208 KOG0585 Ca2+/calmodulin-depend 82.2 1.2 2.6E-05 44.0 3.0 35 492-526 97-132 (576)
209 KOG0666 Cyclin C-dependent kin 81.9 0.48 1E-05 44.0 0.2 31 497-527 29-64 (438)
210 PF13516 LRR_6: Leucine Rich r 81.9 0.24 5.1E-06 26.7 -1.1 12 35-46 3-14 (24)
211 KOG1235 Predicted unusual prot 81.7 1.6 3.5E-05 44.7 3.9 36 492-528 162-197 (538)
212 KOG1151 Tousled-like protein k 81.6 0.26 5.7E-06 47.8 -1.6 29 497-525 468-497 (775)
213 KOG4258 Insulin/growth factor 80.1 1.4 3E-05 46.5 2.8 21 494-514 996-1016(1025)
214 KOG1024 Receptor-like protein 79.9 0.29 6.4E-06 46.8 -1.8 43 486-528 278-326 (563)
215 COG2112 Predicted Ser/Thr prot 79.5 2.1 4.5E-05 36.8 3.2 30 498-528 28-57 (201)
216 PTZ00382 Variant-specific surf 79.4 2 4.3E-05 32.8 2.9 17 433-449 63-79 (96)
217 smart00364 LRR_BAC Leucine-ric 79.2 1.4 3.1E-05 24.2 1.4 18 258-275 2-19 (26)
218 KOG0610 Putative serine/threon 79.1 1.6 3.5E-05 42.3 2.7 31 498-528 83-114 (459)
219 KOG0983 Mitogen-activated prot 78.7 2.2 4.8E-05 39.1 3.3 37 483-526 90-127 (391)
220 PHA03210 serine/threonine kina 78.6 0.65 1.4E-05 48.1 -0.0 24 491-514 147-170 (501)
221 PF04478 Mid2: Mid2 like cell 78.4 2.7 5.8E-05 34.6 3.4 17 436-452 49-65 (154)
222 KOG0587 Traf2- and Nck-interac 78.2 1.3 2.8E-05 47.1 2.0 45 484-528 11-56 (953)
223 KOG0664 Nemo-like MAPK-related 77.2 0.96 2.1E-05 41.1 0.6 31 495-525 56-87 (449)
224 KOG0592 3-phosphoinositide-dep 76.9 1.2 2.6E-05 44.7 1.3 36 491-526 72-108 (604)
225 PF14575 EphA2_TM: Ephrin type 75.7 1.1 2.4E-05 32.3 0.6 18 480-497 55-72 (75)
226 KOG0596 Dual specificity; seri 75.3 0.82 1.8E-05 46.0 -0.3 43 498-540 367-411 (677)
227 PF01102 Glycophorin_A: Glycop 74.8 1.2 2.6E-05 35.4 0.6 18 436-453 64-81 (122)
228 KOG0612 Rho-associated, coiled 74.8 0.75 1.6E-05 50.3 -0.8 42 485-526 68-110 (1317)
229 KOG0576 Mitogen-activated prot 73.0 1.5 3.3E-05 45.1 0.9 32 496-527 19-51 (829)
230 smart00365 LRR_SD22 Leucine-ri 71.8 3.1 6.8E-05 22.9 1.6 14 10-23 2-15 (26)
231 PF14531 Kinase-like: Kinase-l 70.4 4 8.7E-05 38.4 3.0 30 496-525 16-46 (288)
232 KOG0586 Serine/threonine prote 64.6 5.1 0.00011 41.0 2.6 50 490-539 54-106 (596)
233 KOG0616 cAMP-dependent protein 62.3 4.5 9.9E-05 37.6 1.6 34 494-527 46-80 (355)
234 PRK01723 3-deoxy-D-manno-octul 60.1 12 0.00027 34.2 4.2 30 496-526 35-65 (239)
235 smart00368 LRR_RI Leucine rich 60.0 8 0.00017 21.6 1.8 14 353-366 2-15 (28)
236 KOG0669 Cyclin T-dependent kin 59.5 0.43 9.3E-06 42.9 -5.2 27 498-524 23-50 (376)
237 PF15102 TMEM154: TMEM154 prot 57.1 12 0.00025 30.8 2.9 7 482-488 125-131 (146)
238 KOG0696 Serine/threonine prote 55.7 5 0.00011 39.0 0.7 42 486-528 344-386 (683)
239 PF12191 stn_TNFRSF12A: Tumour 55.5 5.2 0.00011 31.6 0.7 6 456-461 98-103 (129)
240 KOG4645 MAPKKK (MAP kinase kin 54.5 5.4 0.00012 44.8 0.9 35 491-525 1234-1269(1509)
241 PF13095 FTA2: Kinetochore Sim 52.5 15 0.00033 32.5 3.2 32 492-524 37-69 (207)
242 KOG4242 Predicted myosin-I-bin 51.4 63 0.0014 32.5 7.3 57 236-292 415-479 (553)
243 KOG1152 Signal transduction se 51.4 14 0.0003 37.9 3.0 34 493-526 562-596 (772)
244 KOG1033 eIF-2alpha kinase PEK/ 51.3 3.9 8.4E-05 41.1 -0.7 39 488-526 45-84 (516)
245 COG0478 RIO-like serine/threon 50.9 17 0.00036 33.8 3.2 27 498-524 97-123 (304)
246 PF08374 Protocadherin: Protoc 46.5 13 0.00029 32.6 1.8 21 435-455 37-57 (221)
247 PF09919 DUF2149: Uncharacteri 45.9 16 0.00034 27.7 1.9 20 500-521 70-90 (92)
248 KOG0690 Serine/threonine prote 45.8 8.6 0.00019 36.2 0.6 37 492-528 168-205 (516)
249 PF03302 VSP: Giardia variant- 44.7 19 0.00041 35.9 2.9 29 431-459 362-390 (397)
250 KOG0695 Serine/threonine prote 42.3 8.3 0.00018 36.4 -0.0 36 492-527 250-286 (593)
251 KOG1345 Serine/threonine kinas 39.3 21 0.00046 33.0 2.0 46 493-539 25-71 (378)
252 TIGR00864 PCC polycystin catio 38.1 18 0.0004 44.3 1.9 32 335-366 1-32 (2740)
253 KOG3763 mRNA export factor TAP 37.5 18 0.00038 36.9 1.4 13 211-223 271-283 (585)
254 smart00367 LRR_CC Leucine-rich 36.9 24 0.00052 19.1 1.3 11 59-69 2-12 (26)
255 KOG4717 Serine/threonine prote 36.5 15 0.00032 37.2 0.6 30 497-527 23-54 (864)
256 KOG3763 mRNA export factor TAP 35.6 17 0.00036 37.1 0.9 67 134-200 216-284 (585)
257 KOG0670 U4/U6-associated splic 34.9 29 0.00062 35.3 2.4 27 500-526 440-467 (752)
258 KOG4242 Predicted myosin-I-bin 31.6 1.4E+02 0.0031 30.1 6.4 107 282-388 355-479 (553)
259 KOG0668 Casein kinase II, alph 31.6 12 0.00027 33.5 -0.7 31 498-528 44-75 (338)
260 PF02009 Rifin_STEVOR: Rifin/s 30.1 15 0.00033 34.7 -0.4 9 456-464 277-285 (299)
261 PF14610 DUF4448: Protein of u 29.4 43 0.00093 29.4 2.4 25 438-462 159-184 (189)
262 KOG0671 LAMMER dual specificit 27.4 21 0.00046 34.5 0.1 34 494-527 91-125 (415)
263 PTZ00046 rifin; Provisional 26.8 28 0.0006 33.6 0.8 11 455-465 335-345 (358)
264 PRK14051 negative regulator Gr 26.6 75 0.0016 24.4 2.8 26 497-522 28-53 (123)
265 KOG1236 Predicted unusual prot 26.2 24 0.00051 35.0 0.2 41 487-528 185-241 (565)
266 TIGR01477 RIFIN variant surfac 26.0 29 0.00063 33.3 0.7 11 455-465 330-340 (353)
267 PTZ00208 65 kDa invariant surf 26.0 59 0.0013 31.7 2.7 11 501-511 425-435 (436)
268 PF01299 Lamp: Lysosome-associ 25.7 47 0.001 31.8 2.1 8 439-446 273-280 (306)
269 PF01102 Glycophorin_A: Glycop 25.6 29 0.00062 27.8 0.5 22 435-457 67-88 (122)
270 KOG1240 Protein kinase contain 24.6 35 0.00075 38.3 1.1 46 493-539 24-70 (1431)
271 COG1718 RIO1 Serine/threonine 24.3 81 0.0018 29.1 3.1 28 500-527 56-83 (268)
272 KOG0195 Integrin-linked kinase 24.2 41 0.00089 31.0 1.3 52 480-539 185-238 (448)
273 TIGR00864 PCC polycystin catio 21.9 59 0.0013 40.4 2.3 32 16-47 1-32 (2740)
274 PF05568 ASFV_J13L: African sw 21.8 37 0.00081 27.5 0.5 7 443-449 36-42 (189)
275 PF07213 DAP10: DAP10 membrane 21.1 69 0.0015 23.2 1.6 13 436-448 34-46 (79)
276 PF12877 DUF3827: Domain of un 21.0 79 0.0017 33.0 2.7 25 437-461 271-295 (684)
277 KOG0588 Serine/threonine prote 20.7 62 0.0014 34.1 1.9 30 498-527 18-48 (786)
278 PF08277 PAN_3: PAN-like domai 20.6 77 0.0017 22.2 1.9 18 506-523 54-71 (71)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-60 Score=530.04 Aligned_cols=512 Identities=29% Similarity=0.450 Sum_probs=361.7
Q ss_pred CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304 2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN 81 (540)
Q Consensus 2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 81 (540)
+|..++++++|++|+|++|.+.+.+|..++.+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+++.+|..+++
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~ 258 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGN 258 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhC
Confidence 57778888888888888888888888888888888888888888887777776 67888888888888888788888888
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 161 (540)
+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+. +|..+.++++|+.|++++|.+.+.+| ..+..+
T Consensus 259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l- 331 (968)
T PLN00113 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-----IPELVIQLQNLEILHLFSNNFTGKIP-VALTSL- 331 (968)
T ss_pred CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-----CChhHcCCCCCcEEECCCCccCCcCC-hhHhcC-
Confidence 88888888888888777777777788888888887777654 44455556666666666666655555 444444
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccc------------------------cCccccCCCCCCeeee
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGS------------------------IPITLSKLQKLQGLSL 217 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~------------------------~~~~l~~l~~L~~L~l 217 (540)
++|+.|++++|.+.+.+|..++.+++|+.|++++|++.+. +|..+..+++|+.|++
T Consensus 332 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L 411 (968)
T PLN00113 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL 411 (968)
T ss_pred CCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence 4555555555555555555555555555555555555444 4444455555555555
Q ss_pred eCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCC
Q 045304 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGP 296 (540)
Q Consensus 218 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~ 296 (540)
++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+ +|.. ...++|+.|++++|++.+.
T Consensus 412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~ 490 (968)
T PLN00113 412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGA 490 (968)
T ss_pred cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCc
Confidence 5555555555555566666666666666666555555566666666666666655 4433 3446788888888888888
Q ss_pred CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCC
Q 045304 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL 376 (540)
Q Consensus 297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 376 (540)
+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 491 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 570 (968)
T PLN00113 491 VPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNV 570 (968)
T ss_pred cChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC-CCCCCCCCCCCCcCccccceecccchhhHHHHHHHHHh
Q 045304 377 SYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP-NLRVPPCKTSTHHTSWKNALLLGTVLPLSTIFMIVVIL 455 (540)
Q Consensus 377 ~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 455 (540)
++|+.+++++|++.|.+|..+.+..+....+.||+.+|+.+ ....++|..... ......++++++++++++++++++
T Consensus 571 ~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 648 (968)
T PLN00113 571 ESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRK--TPSWWFYITCTLGAFLVLALVAFG 648 (968)
T ss_pred cccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccccc--cceeeeehhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999864 223456643211 111222222222222222222222
Q ss_pred hheeeeccCCCCCCC---CCCCCCc-----ccccccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 456 LILRYRKRVKPPPND---ANMPPVA-----TWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 456 ~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
++++++|++...... ...+... ..+.++++++. ..|.++++||+|+||.||||+. .+|..||||++..
T Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~ 725 (968)
T PLN00113 649 FVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEIND 725 (968)
T ss_pred HHHHHhhhcccccccccccccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccC
Confidence 222222221111100 0001100 11234445444 4578889999999999999997 5789999999964
Q ss_pred c
Q 045304 527 H 527 (540)
Q Consensus 527 ~ 527 (540)
.
T Consensus 726 ~ 726 (968)
T PLN00113 726 V 726 (968)
T ss_pred C
Confidence 3
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9e-50 Score=443.05 Aligned_cols=407 Identities=35% Similarity=0.556 Sum_probs=343.1
Q ss_pred CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304 2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN 81 (540)
Q Consensus 2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 81 (540)
+|..++++++|++|+|++|.+.+.+|..++++++|++|++++|.+.+.+|..+ .++++|+.|++++|.+++.+|..+++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEECcCCccCCcCChhHhc
Confidence 68889999999999999999999999999999999999999999998899887 79999999999999999999999999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 161 (540)
+++|++|++++|.+++.+|..++++++|++|++++|.+.+. +|..+.++++|+.|++++|.+.+.+| ..+..+
T Consensus 235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l- 307 (968)
T PLN00113 235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP-----IPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQL- 307 (968)
T ss_pred CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeecc-----CchhHhhccCcCEEECcCCeeccCCC-hhHcCC-
Confidence 99999999999999999999999999999999999999876 67788999999999999999999888 677777
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 79999999999999999999999999999999999999999999999999999999999888777776666666666666
Q ss_pred CCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCcccc------------------------CCCCCcEEECCCCcccCC
Q 045304 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFW------------------------NLKDILYLNFSSNFLTGP 296 (540)
Q Consensus 242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~------------------------~l~~L~~L~L~~n~l~~~ 296 (540)
++|.+.+.+|..+..+++|+.|++++|.+++ +|..+. .+++|+.|++++|++.+.
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeee
Confidence 6666655555555555555555555555543 444444 445555555555555555
Q ss_pred CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCC
Q 045304 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL 376 (540)
Q Consensus 297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 376 (540)
+|..+ ...+|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+
T Consensus 468 ~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 546 (968)
T PLN00113 468 LPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546 (968)
T ss_pred cCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence 55433 23567777777777877888888888999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCCC
Q 045304 377 SYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGSP 417 (540)
Q Consensus 377 ~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~ 417 (540)
++|+.|++++|++++.+|.. ..+..+...++.+|+..+..|
T Consensus 547 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred ccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 99999999999999988864 345567778888888765443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-39 Score=308.40 Aligned_cols=397 Identities=22% Similarity=0.262 Sum_probs=311.9
Q ss_pred CCCEEeccCcccccCCCccccCC--CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304 11 NLELLVLSHNKLVGVIPTKVFNV--STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLL 88 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 88 (540)
+-+.|+.+.+.+....-..+... +.-++||+++|.+. .+....|.++++|+.+++..|.++ .+|...+...+|+.|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKL 130 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEE
Confidence 34556777777654322333322 34566899998887 666666688899999999888888 778766667778999
Q ss_pred EccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEE
Q 045304 89 ELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFY 168 (540)
Q Consensus 89 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~ 168 (540)
+|.+|.++.+-.+++..++.|+.|||+.|.++.++. ..+..-.++++|+|++|.++..-. ..+..+ .+|..|.
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~-----~sfp~~~ni~~L~La~N~It~l~~-~~F~~l-nsL~tlk 203 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK-----PSFPAKVNIKKLNLASNRITTLET-GHFDSL-NSLLTLK 203 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccC-----CCCCCCCCceEEeecccccccccc-cccccc-chheeee
Confidence 999988887777788888889999999888887643 335555688899999988876654 566667 5888889
Q ss_pred ccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcc
Q 045304 169 MPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR 248 (540)
Q Consensus 169 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 248 (540)
|+.|.++...+..|.++++|+.|+|..|++.-.---.|.++++|+.|.+..|.+...-...|..+.++++|+|..|+++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 99998886666778889999999999998874445678888999999999998887777788888899999999998887
Q ss_pred ccCccCCCCCCCCEeeCCCCCCCCC-CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccccc
Q 045304 249 SIPACFSNLASLRTLSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS 327 (540)
Q Consensus 249 ~~~~~~~~l~~L~~L~l~~n~l~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 327 (540)
.-...+.++++|+.|++++|.|..| +..+..+++|+.|+|+.|+++...+..|..+..|++|.|+.|.+...-...|..
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 7777788888999999999988885 445667788999999999998888888888889999999999888777778888
Q ss_pred CCCCcEEeCcCccCcccCC---cccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCc
Q 045304 328 LKGLQYLFVGYNRLQGSIP---YSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSA 404 (540)
Q Consensus 328 l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~ 404 (540)
+++|++|||++|.+++.+. ..|.++++|+.|++.+|++....-.+|..++.|+.||+.+|.+...-|....-..+..
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~ 443 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKE 443 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhh
Confidence 8899999999998887664 3466788899999999998866666788889999999999988766665433335556
Q ss_pred ccccCCCCCCCC
Q 045304 405 ESFEGNELLCGS 416 (540)
Q Consensus 405 ~~~~~n~~~c~~ 416 (540)
+.+....++|+|
T Consensus 444 Lv~nSssflCDC 455 (873)
T KOG4194|consen 444 LVMNSSSFLCDC 455 (873)
T ss_pred hhhcccceEEec
Confidence 666666777877
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-39 Score=308.52 Aligned_cols=373 Identities=23% Similarity=0.259 Sum_probs=335.9
Q ss_pred CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304 11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL 90 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 90 (540)
.-+.|++++|.+....+..|.++++|+.+.+.+|.++ .||... .-..+|+.|+|.+|.++..-.+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 4467999999999888889999999999999999998 899876 56778999999999999888889999999999999
Q ss_pred cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEcc
Q 045304 91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP 170 (540)
Q Consensus 91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~ 170 (540)
+.|.++.+.-..|..-.++++|+|++|+++.... ..|.++.+|..|.|++|.++...+ ..+.++ +.|+.|+|.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~-----~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L-~~L~~LdLn 229 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLET-----GHFDSLNSLLTLKLSRNRITTLPQ-RSFKRL-PKLESLDLN 229 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeecccccccccc-----ccccccchheeeecccCcccccCH-HHhhhc-chhhhhhcc
Confidence 9999998777788888999999999999998743 468888999999999999987655 778888 899999999
Q ss_pred CCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc
Q 045304 171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI 250 (540)
Q Consensus 171 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 250 (540)
.|.+.-.---.|..+++|+.|.+..|.+...-...|..+.++++|+|+.|++...-..++.+++.|+.|++++|.|...-
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheee
Confidence 99987554557889999999999999999777788999999999999999999887889999999999999999999999
Q ss_pred CccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcc---ccc
Q 045304 251 PACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPT---TIG 326 (540)
Q Consensus 251 ~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~ 326 (540)
++.+.-+++|+.|+|++|+++.+++ .|..+..|+.|+|++|.++..-...|..+++|+.|||+.|.+++.+.+ .|.
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred cchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 9999999999999999999999876 677889999999999999977778899999999999999999987754 567
Q ss_pred cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeC
Q 045304 327 SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEI 393 (540)
Q Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 393 (540)
.+++|+.|++.+|++....-.+|.++..|+.|||.+|.+....|.+|..+ .|+.|-+..-.+.+.+
T Consensus 390 gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDC 455 (873)
T ss_pred cchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEec
Confidence 89999999999999996666899999999999999999999999999998 8999888766555544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=1e-36 Score=291.76 Aligned_cols=373 Identities=26% Similarity=0.360 Sum_probs=325.6
Q ss_pred cCCCCCCCEEeccCcccc-cCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304 6 IGNLRNLELLVLSHNKLV-GVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK 84 (540)
Q Consensus 6 ~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 84 (540)
.+-++-++-+|+++|.++ +..|.....++.++.|.|....+. .+|... +.+.+|++|.+++|++. .+-..++.++.
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~-~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLI-SVHGELSDLPR 79 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhH-hhhhhhccchh
Confidence 456778889999999999 778999999999999999999998 899998 79999999999999988 44556888999
Q ss_pred CCEEEccCCcccc-cCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304 85 LSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS 163 (540)
Q Consensus 85 L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~ 163 (540)
|+.+.+.+|++.. -+|..+.++..|+.|||++|++.. .|..+..-+++-+|+|+.|++..+ |...+.++ ..
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E------vP~~LE~AKn~iVLNLS~N~IetI-Pn~lfinL-tD 151 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE------VPTNLEYAKNSIVLNLSYNNIETI-PNSLFINL-TD 151 (1255)
T ss_pred hHHHhhhccccccCCCCchhcccccceeeecchhhhhh------cchhhhhhcCcEEEEcccCccccC-CchHHHhh-Hh
Confidence 9999999998853 367788899999999999999987 556677888999999999999764 54666666 67
Q ss_pred CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCcccc-CcCCccccCCCCCCeEEcC
Q 045304 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLE-GSIPNNICRLTELYELDLG 242 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~ 242 (540)
|-.|+|++|.+. .+|+.+..+..|++|.|++|.+....-..+..+++|+.|++++.+-+ ..+|..+..+.+|..+|++
T Consensus 152 LLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS 230 (1255)
T ss_pred Hhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc
Confidence 899999999996 78888999999999999999887544445667888899999886532 4688999999999999999
Q ss_pred CCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee-cC
Q 045304 243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG-VI 321 (540)
Q Consensus 243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 321 (540)
.|.+. ..|+.+..+++|+.|+|++|.++.+........+|++|+|+.|+++ .+|+.+..++.|+.|.+.+|+++- -+
T Consensus 231 ~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGi 308 (1255)
T KOG0444|consen 231 ENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGI 308 (1255)
T ss_pred ccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCC
Confidence 99997 7899999999999999999999998777777789999999999998 789999999999999999998863 47
Q ss_pred ccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 322 PTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
|+.++.+.+|+.+..++|.+. ..|..+..|..|+.|.|+.|.+- ++|+.+.-++.|+.||+..|+-.-..|
T Consensus 309 PSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 309 PSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 999999999999999999997 88999999999999999999998 889999999999999999997543333
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=3.4e-35 Score=281.33 Aligned_cols=372 Identities=24% Similarity=0.378 Sum_probs=322.1
Q ss_pred cCCCCCCEEEcccCcCc-cccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 045304 31 FNVSTLKVFEVSNNSLS-GSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNL 109 (540)
Q Consensus 31 ~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 109 (540)
+.++-.+-.|+++|.++ +.+|..+ ..+++++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v-~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDV-EQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhH-HHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence 45667788999999999 5789888 79999999999999988 89999999999999999999987 455678899999
Q ss_pred CEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCC
Q 045304 110 NKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLI 189 (540)
Q Consensus 110 ~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 189 (540)
+.+.+..|++.... +|..+..+..|+.|||+.|++... | ..+..- .++-.|+|++|++.....+-+.++..|-
T Consensus 81 Rsv~~R~N~LKnsG----iP~diF~l~dLt~lDLShNqL~Ev-P-~~LE~A-Kn~iVLNLS~N~IetIPn~lfinLtDLL 153 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSG----IPTDIFRLKDLTILDLSHNQLREV-P-TNLEYA-KNSIVLNLSYNNIETIPNSLFINLTDLL 153 (1255)
T ss_pred HHHhhhccccccCC----CCchhcccccceeeecchhhhhhc-c-hhhhhh-cCcEEEEcccCccccCCchHHHhhHhHh
Confidence 99999999987753 788899999999999999999865 3 445444 7889999999999855555678899999
Q ss_pred eeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc-cccCccCCCCCCCCEeeCCCC
Q 045304 190 IIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS-RSIPACFSNLASLRTLSLGSN 268 (540)
Q Consensus 190 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n 268 (540)
.|+|++|++. .+|..+..+.+|++|+|++|.+.-..-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|
T Consensus 154 fLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N 232 (1255)
T KOG0444|consen 154 FLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN 232 (1255)
T ss_pred hhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence 9999999998 67777889999999999999886444455678889999999987544 468889999999999999999
Q ss_pred CCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcc-cCCc
Q 045304 269 ELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG-SIPY 347 (540)
Q Consensus 269 ~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~ 347 (540)
++..+|+++.++++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|++++.++.|+.|.+.+|+++- -+|.
T Consensus 233 ~Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 233 NLPIVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred CCCcchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 99999999999999999999999998 44445666789999999999999 899999999999999999998874 4899
Q ss_pred ccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCCC
Q 045304 348 SIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGSP 417 (540)
Q Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~ 417 (540)
.++.+..|+.+..++|.+. ..|..++.|..|+.|.++.|.+.. +|.. ..+..+..+++..||.+.-.|
T Consensus 311 GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence 9999999999999999998 899999999999999999999974 5543 456677888888998776543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=1.7e-36 Score=275.94 Aligned_cols=391 Identities=27% Similarity=0.418 Sum_probs=238.8
Q ss_pred CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304 2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN 81 (540)
Q Consensus 2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 81 (540)
+|++++.+..++.++.++|++. .+|++++.+..|+.|+.++|.+. .+|+.+ +.+-.|+.++..+|+++ ..|..+++
T Consensus 83 lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l~dl~~~~N~i~-slp~~~~~ 158 (565)
T KOG0472|consen 83 LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDLEDLDATNNQIS-SLPEDMVN 158 (565)
T ss_pred CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhhhhhhccccccc-cCchHHHH
Confidence 5666777777777777777776 56666777777777777777766 666666 46666777777666666 55666666
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 161 (540)
+.+|..+++.+|.+....|..+ +++.|++||...|-++. +|..++.+.+|..|++..|.+... ..++.+
T Consensus 159 ~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~t------lP~~lg~l~~L~~LyL~~Nki~~l---Pef~gc- 227 (565)
T KOG0472|consen 159 LSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLET------LPPELGGLESLELLYLRRNKIRFL---PEFPGC- 227 (565)
T ss_pred HHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhhc------CChhhcchhhhHHHHhhhcccccC---CCCCcc-
Confidence 6666666666666664333333 36666666666666555 445566666666666666665543 234444
Q ss_pred ccCcEEEccCCcceecCChh-ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEE
Q 045304 162 HSLEYFYMPNCNVSGGIPEE-ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 240 (540)
..|++|.+..|++. .+|.+ ..+++++..||+.+|++. ..|..+.-+++|.+||+++|.++ .+|..++++ +|+.|.
T Consensus 228 s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~ 303 (565)
T KOG0472|consen 228 SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLA 303 (565)
T ss_pred HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehh
Confidence 45666666666554 33333 336666666666666665 55555666666666666666666 355566666 566666
Q ss_pred cCCCCCccc--------------------------------------cCcc---CCCCCCCCEeeCCCCCCCCCCccccC
Q 045304 241 LGSNKFSRS--------------------------------------IPAC---FSNLASLRTLSLGSNELTSIPLTFWN 279 (540)
Q Consensus 241 l~~n~l~~~--------------------------------------~~~~---~~~l~~L~~L~l~~n~l~~ip~~~~~ 279 (540)
+.+|.+... .+.. ...+.+.+.|+++.-+++.+|...+.
T Consensus 304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe 383 (565)
T KOG0472|consen 304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE 383 (565)
T ss_pred hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence 666654200 0000 01123445555555555555554433
Q ss_pred CCC---CcEEECCCCccc-----------------------CCCccccccccCcceEEcccceeeecCccccccCCCCcE
Q 045304 280 LKD---ILYLNFSSNFLT-----------------------GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY 333 (540)
Q Consensus 280 l~~---L~~L~L~~n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 333 (540)
..+ ...++++.|++. +.+|..++.+++|+.|+|++|-+. .+|..++.+..|+.
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQT 462 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhhe
Confidence 322 344445444443 344555566666666777666555 56666666666777
Q ss_pred EeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCC
Q 045304 334 LFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELL 413 (540)
Q Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~ 413 (540)
|+++.|+|. .+|..+..+..++.+-.++|++....|+.+..+.+|.+||+.+|.+....|.-+.+.++....+.|||+-
T Consensus 463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 777777665 5555555555555555556666655555577888888888888888876666677888888888888754
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=3.6e-34 Score=260.81 Aligned_cols=387 Identities=30% Similarity=0.443 Sum_probs=291.6
Q ss_pred cccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCC
Q 045304 4 HEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNAS 83 (540)
Q Consensus 4 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 83 (540)
+++.++..|.+|++++|++. .+|.+++.+..++.|+.++|.+. .+|..+ ..+.+|+.|+.++|++. .+|+.++.+.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~-el~~~i~~~~ 137 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELK-ELPDSIGRLL 137 (565)
T ss_pred HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhcccccee-ecCchHHHHh
Confidence 46778899999999999999 78999999999999999999998 899998 68999999999999998 7888999999
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304 84 KLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS 163 (540)
Q Consensus 84 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~ 163 (540)
.|..++..+|+++ ..|+.+..+.+|..+++.+|.+... ++..-+++.|+++|...|.+.. +| ..++.+ .+
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l------~~~~i~m~~L~~ld~~~N~L~t-lP-~~lg~l-~~ 207 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL------PENHIAMKRLKHLDCNSNLLET-LP-PELGGL-ES 207 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC------CHHHHHHHHHHhcccchhhhhc-CC-hhhcch-hh
Confidence 9999999999998 5788899999999999999999874 4445569999999999987754 55 678888 89
Q ss_pred CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccc-cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC
Q 045304 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 242 (540)
|+.|++..|.+. .+| .|..|..|++++++.|++. .+|... .+++++..||+.+|++. ..|+.++.+.+|++||++
T Consensus 208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLS 283 (565)
T ss_pred hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhccc
Confidence 999999999997 566 7999999999999999998 566544 58999999999999999 789999999999999999
Q ss_pred CCCCccccCccCCCCCCCCEeeCCCCCCCCCCc------------------------------------------cccCC
Q 045304 243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPL------------------------------------------TFWNL 280 (540)
Q Consensus 243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~------------------------------------------~~~~l 280 (540)
+|.++ .+|..++++ .|+.|.+.+|.+..|-. ....+
T Consensus 284 NN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 284 NNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred CCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 99998 578889999 99999999997654210 01122
Q ss_pred CCCcEEECCCCcccCCCcccccccc---CcceEEcccceeeecCccc------------------------cccCCCCcE
Q 045304 281 KDILYLNFSSNFLTGPLPLEIENLK---VLVGIDFSVNNFSGVIPTT------------------------IGSLKGLQY 333 (540)
Q Consensus 281 ~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~------------------------~~~l~~L~~ 333 (540)
.+.+.|++++-+++. +|+...... -.+.++++.|++. .+|.. ++.+++|..
T Consensus 362 i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence 356788888888884 454432222 2566777777766 34443 444455555
Q ss_pred EeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCC-CCCCCCCCcccccCCCC
Q 045304 334 LFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR-GGSFGNFSAESFEGNEL 412 (540)
Q Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~~~~~~~~~~~n~~ 412 (540)
|+|++|.+. .+|..++.+..|+.||++.|++. .+|.++..+..++.+-.++|++...-|. -..+.+++..++..|..
T Consensus 440 L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdl 517 (565)
T KOG0472|consen 440 LDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDL 517 (565)
T ss_pred eecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCch
Confidence 555555444 44555555555555555555554 4454444444444444444444322222 12345556666666654
Q ss_pred CC
Q 045304 413 LC 414 (540)
Q Consensus 413 ~c 414 (540)
..
T Consensus 518 q~ 519 (565)
T KOG0472|consen 518 QQ 519 (565)
T ss_pred hh
Confidence 43
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.8e-32 Score=272.80 Aligned_cols=246 Identities=29% Similarity=0.386 Sum_probs=142.3
Q ss_pred cccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEE
Q 045304 161 SHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240 (540)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 240 (540)
+.+|++++++.|+++ .+|+++..+.+|+.+.+..|+++ .+|..+....+|+.|.+..|.+. .+|+....+..|++|+
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 357888888888877 45688888888888888888885 67777777778888888888877 5667777788888888
Q ss_pred cCCCCCccccCccCCCCCC-CCEeeCCCCCCCCCCcc-ccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee
Q 045304 241 LGSNKFSRSIPACFSNLAS-LRTLSLGSNELTSIPLT-FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS 318 (540)
Q Consensus 241 l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 318 (540)
|..|++....+..|..... |+.|+.+.|.+...|.. -...+.|+.|++.+|.++...-..+.+...|+.|+|++|++.
T Consensus 317 L~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 317 LQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred ehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 8888876333222222221 44444444444444321 112334555555555555555555555555555555555555
Q ss_pred ecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee-eCCCCC
Q 045304 319 GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG-EIPRGG 397 (540)
Q Consensus 319 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~-~~p~~~ 397 (540)
......+.++..|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++. .+|...
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC
Confidence 333334455555555555555555 44555555555555555555555 344 44455555555555555532 222222
Q ss_pred CCCCCCcccccCCCC
Q 045304 398 SFGNFSAESFEGNEL 412 (540)
Q Consensus 398 ~~~~~~~~~~~~n~~ 412 (540)
...++..+++.||++
T Consensus 474 p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 PSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCcccceeeccCCcc
Confidence 224445555555543
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=2.6e-25 Score=247.71 Aligned_cols=338 Identities=22% Similarity=0.264 Sum_probs=247.1
Q ss_pred cccCCCCCCCEEeccCcc------cccCCCccccCC-CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCC
Q 045304 4 HEIGNLRNLELLVLSHNK------LVGVIPTKVFNV-STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIP 76 (540)
Q Consensus 4 ~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (540)
.+|.++++|+.|.+..+. +...+|..|..+ .+|+.|++.++.+. .+|..+ .+.+|+.|++.+|.+. .++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccc
Confidence 457888899988886553 233466777665 46888999888876 788776 5788999999988877 567
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccc
Q 045304 77 HFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTS 156 (540)
Q Consensus 77 ~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 156 (540)
..+..+++|+.|+|+++.....+|. +..+++|++|++.+|..... +|..+.++++|+.|++++|...+.+| ..
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~-----lp~si~~L~~L~~L~L~~c~~L~~Lp-~~ 700 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE-----LPSSIQYLNKLEDLDMSRCENLEILP-TG 700 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc-----cchhhhccCCCCEEeCCCCCCcCccC-Cc
Confidence 7778888999999988765555664 77888999999988754433 66778888889999998876666666 33
Q ss_pred cccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCcccc-------CcCCcc
Q 045304 157 VGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLE-------GSIPNN 229 (540)
Q Consensus 157 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-------~~~p~~ 229 (540)
+ .+ .+|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++... ...+..
T Consensus 701 i-~l-~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 701 I-NL-KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred C-CC-CCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhh
Confidence 3 34 68888888888766666643 457888888888876 556544 5677888877664321 111222
Q ss_pred ccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC-CCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcc
Q 045304 230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN-ELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV 308 (540)
Q Consensus 230 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 308 (540)
+...++|+.|++++|...+.+|..++++++|+.|++++| .+..+|... .+++|+.|++++|.....+|.. ..+|+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~ 849 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNIS 849 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccC
Confidence 334567888888888777778888888888888888886 456677665 6788888888887655555543 35788
Q ss_pred eEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCc
Q 045304 309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN 364 (540)
Q Consensus 309 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 364 (540)
.|+|++|.++ .+|.++..+++|+.|++++|.--..+|..+..+++|+.+++++|.
T Consensus 850 ~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 850 DLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred EeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 8888888887 577788888888888888854333567677778888888888774
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=5.6e-29 Score=249.32 Aligned_cols=245 Identities=32% Similarity=0.389 Sum_probs=151.0
Q ss_pred CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCe
Q 045304 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQG 214 (540)
Q Consensus 135 l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 214 (540)
-.+|++++++.|++.+. | ..++.+ .+|+.+....|+++ .+|..+....+|+.|.+..|.+. -+|....+.+.|++
T Consensus 240 p~nl~~~dis~n~l~~l-p-~wi~~~-~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNL-P-EWIGAC-ANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT 314 (1081)
T ss_pred cccceeeecchhhhhcc-h-HHHHhc-ccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence 35788888888888765 4 677777 89999999999994 78888999999999999999998 46666788999999
Q ss_pred eeeeCccccCcCCccc-cCCCC-CCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCC
Q 045304 215 LSLADNKLEGSIPNNI-CRLTE-LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSN 291 (540)
Q Consensus 215 L~l~~n~~~~~~p~~~-~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n 291 (540)
|+|..|.+. .+|+.+ ..+.. |..|..+.|.+.......=..++.|+.|.+.+|.+++ .-..+.+...|+.|+|++|
T Consensus 315 LdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN 393 (1081)
T KOG0618|consen 315 LDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN 393 (1081)
T ss_pred eeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence 999999987 455432 22222 4444445454432211111223445555555555555 2223444455555666665
Q ss_pred cccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCc
Q 045304 292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV 371 (540)
Q Consensus 292 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 371 (540)
++.......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++...-.
T Consensus 394 rL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~ 470 (1081)
T KOG0618|consen 394 RLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLP 470 (1081)
T ss_pred ccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhh
Confidence 555444444555555555566666555 44555555555555555555555 444 455555555666655555533222
Q ss_pred cccCCCCCCeEEcccCc
Q 045304 372 SLEKLSYLEDLNLSFNK 388 (540)
Q Consensus 372 ~~~~~~~L~~l~l~~n~ 388 (540)
.....++|++||+++|.
T Consensus 471 ~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 471 EALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhCCCcccceeeccCCc
Confidence 22223555555555554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.5e-24 Score=241.59 Aligned_cols=342 Identities=23% Similarity=0.253 Sum_probs=268.7
Q ss_pred CCccccCCCCCCEEEcccCc------CccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccC
Q 045304 26 IPTKVFNVSTLKVFEVSNNS------LSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI 99 (540)
Q Consensus 26 ~~~~~~~l~~L~~L~l~~n~------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 99 (540)
.+.+|.+|.+|+.|.+..+. +...+|..+..-.++|+.|++.++.+. .+|..+ ...+|+.|++.+|.+. .+
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 34678899999999997653 233566665322357999999998876 677766 5689999999999987 56
Q ss_pred CccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCC
Q 045304 100 PDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP 179 (540)
Q Consensus 100 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 179 (540)
+..+..+++|+.|+|+++..... +| .+..+++|+.|++++|.....+| ..++.+ .+|+.|++++|...+.+|
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~-----ip-~ls~l~~Le~L~L~~c~~L~~lp-~si~~L-~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKE-----IP-DLSMATNLETLKLSDCSSLVELP-SSIQYL-NKLEDLDMSRCENLEILP 698 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCc-----CC-ccccCCcccEEEecCCCCccccc-hhhhcc-CCCCEEeCCCCCCcCccC
Confidence 77788999999999998754332 33 47788999999999998777777 677777 799999999988777888
Q ss_pred hhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc-------cccCc
Q 045304 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS-------RSIPA 252 (540)
Q Consensus 180 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-------~~~~~ 252 (540)
..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++..+... ...+.
T Consensus 699 ~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 699 TGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred CcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchh
Confidence 766 7899999999998766666643 468899999999987 567655 6788888888764321 11222
Q ss_pred cCCCCCCCCEeeCCCCCC-CCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCC
Q 045304 253 CFSNLASLRTLSLGSNEL-TSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGL 331 (540)
Q Consensus 253 ~~~~l~~L~~L~l~~n~l-~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 331 (540)
.+..+++|+.|++++|.. ..+|..+.++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. .++|
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---cccc
Confidence 233457899999999864 4599999999999999999987666777766 6899999999998665555543 3689
Q ss_pred cEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcc
Q 045304 332 QYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKL 389 (540)
Q Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l 389 (540)
+.|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+..++.|+.+++++|.-
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 99999999998 7888999999999999999654446777788899999999998863
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=3.3e-25 Score=202.25 Aligned_cols=365 Identities=23% Similarity=0.230 Sum_probs=230.9
Q ss_pred CCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccC-CcccccCCccccCCCCCCEE
Q 045304 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRS-NNFCGTIPHFIFNASKLSLL 88 (540)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L 88 (540)
.+-..|+|..|.|+.+.|.+|+.+++|+.|||+.|.|+ .|.+..|.++++|..|-+.+ |+|+......|+++..|+.|
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 36678899999999777789999999999999999998 77777778999888877766 88886666778899999999
Q ss_pred EccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCc-----------ccc
Q 045304 89 ELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG-----------TSV 157 (540)
Q Consensus 89 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-----------~~~ 157 (540)
.+.-|++.....+.|..+++|..|.+.+|.+..+.. ..+..+..++.+.+..|.+...... ..+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-----~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-----GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc-----ccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 999999988888889999999999999998887533 2577788888888887764321000 000
Q ss_pred ccc---------------------cccCcEE---EccCCcceecCC-hhccCCCCCCeeeccCCccccccCccccCCCCC
Q 045304 158 GNL---------------------SHSLEYF---YMPNCNVSGGIP-EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKL 212 (540)
Q Consensus 158 ~~l---------------------~~~L~~L---~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 212 (540)
+.. ...++.+ ....+...+..| ..|..+++|+.|++++|+++.+-+.+|.+...+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 000 0011111 111222222233 346777888888888888887777778888888
Q ss_pred CeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC---C---Cccc---------
Q 045304 213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS---I---PLTF--------- 277 (540)
Q Consensus 213 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---i---p~~~--------- 277 (540)
++|.|..|++...-...|.++..|+.|+|++|+|+...|.+|..+.+|.+|++-.|.+.- + -+++
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 888888887765555667777788888888888887777778777778887776665432 1 0000
Q ss_pred --cCCCCCcEEECCCCcccCC---Ccccc---------ccccCcce-EEcccceeeecCccccccCCCCcEEeCcCccCc
Q 045304 278 --WNLKDILYLNFSSNFLTGP---LPLEI---------ENLKVLVG-IDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ 342 (540)
Q Consensus 278 --~~l~~L~~L~L~~n~l~~~---~~~~~---------~~l~~L~~-L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 342 (540)
.....++.+.+++..+... .|... ..++-+.+ ...|+..+. .+|..+. ...+++++.+|.++
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT 457 (498)
T ss_pred CCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc
Confidence 0111233333333322110 11100 00111111 112222221 2222221 23456677777776
Q ss_pred ccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304 343 GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387 (540)
Q Consensus 343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 387 (540)
.+|.. .+.+| .+|+++|++....-..|.+++.|.++-+++|
T Consensus 458 -~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 -SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 55554 45556 6777777776555556667777777766654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=4.1e-22 Score=206.44 Aligned_cols=264 Identities=25% Similarity=0.367 Sum_probs=135.5
Q ss_pred CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304 11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL 90 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 90 (540)
.-..|+++.+.++ .+|..+. ++|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|.. .++|+.|++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 3456667777666 4565554 36667777777666 4553 2466666666666666 33432 245666666
Q ss_pred cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEcc
Q 045304 91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP 170 (540)
Q Consensus 91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~ 170 (540)
++|.+.. +|.. ..+|+.|++++|+++..+ . ..++|+.|++++|.+.+. | . .+..|+.|.++
T Consensus 270 s~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~LP------~---~p~~L~~LdLS~N~L~~L-p-~----lp~~L~~L~Ls 330 (788)
T PRK15387 270 FSNPLTH-LPAL---PSGLCKLWIFGNQLTSLP------V---LPPGLQELSVSDNQLASL-P-A----LPSELCKLWAY 330 (788)
T ss_pred cCCchhh-hhhc---hhhcCEEECcCCcccccc------c---cccccceeECCCCccccC-C-C----Ccccccccccc
Confidence 6666552 3322 244556666666655431 1 124566666666655542 1 0 11334444454
Q ss_pred CCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc
Q 045304 171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI 250 (540)
Q Consensus 171 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 250 (540)
+|.+++ +|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.++. +
T Consensus 331 ~N~L~~-LP~l---------------------------p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-L 377 (788)
T PRK15387 331 NNQLTS-LPTL---------------------------PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-L 377 (788)
T ss_pred cCcccc-cccc---------------------------ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-C
Confidence 444432 2221 1244455555555442 3321 1344445555555542 3
Q ss_pred CccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCC
Q 045304 251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG 330 (540)
Q Consensus 251 ~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 330 (540)
|.. ..+|+.|++++|.++.+|.. .++|+.|++++|++.+ +|.. ...|+.|++++|+++ .+|..+..+++
T Consensus 378 P~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~ 446 (788)
T PRK15387 378 PAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSS 446 (788)
T ss_pred ccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccC
Confidence 322 23455555555555555432 1345555566555553 3332 124555666666665 45666666666
Q ss_pred CcEEeCcCccCcccCCccc
Q 045304 331 LQYLFVGYNRLQGSIPYSI 349 (540)
Q Consensus 331 L~~L~l~~n~l~~~~~~~~ 349 (540)
|+.|+|++|.+++..+..+
T Consensus 447 L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 447 ETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCeEECCCCCCCchHHHHH
Confidence 6666666666666555444
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=9.8e-22 Score=203.66 Aligned_cols=264 Identities=26% Similarity=0.320 Sum_probs=159.6
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCC
Q 045304 60 NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLT 139 (540)
Q Consensus 60 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~ 139 (540)
.-..|+++++.++ .+|..+. .+|+.|++.+|+++. +|. .+++|++|++++|+++..+. ..++|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~---------lp~sL~ 265 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV---------LPPGLL 265 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC---------cccccc
Confidence 3556777777766 5565553 367777777777663 343 24667777777777765321 124667
Q ss_pred EEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeC
Q 045304 140 YIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLAD 219 (540)
Q Consensus 140 ~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 219 (540)
.|++++|.+... | .++.+|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.. ...|+.|++++
T Consensus 266 ~L~Ls~N~L~~L-p-----~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~ 331 (788)
T PRK15387 266 ELSIFSNPLTHL-P-----ALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYN 331 (788)
T ss_pred eeeccCCchhhh-h-----hchhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CCCC---ccccccccccc
Confidence 777777766532 1 12245667777777665 3443 23567777777777764 3432 23566677777
Q ss_pred ccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCcc
Q 045304 220 NKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL 299 (540)
Q Consensus 220 n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~ 299 (540)
|.+++ +|.. ..+|+.|+|++|++++ +|.. .++|+.|++++|.++.+|... .+|+.|++++|.+.+ +|.
T Consensus 332 N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l~---~~L~~LdLs~N~Lt~-LP~ 399 (788)
T PRK15387 332 NQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTS-LPV 399 (788)
T ss_pred Ccccc-cccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcccc---cccceEEecCCcccC-CCC
Confidence 77763 4431 1467777777777763 4432 246667777777777766532 456777777777663 333
Q ss_pred ccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccc
Q 045304 300 EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSL 373 (540)
Q Consensus 300 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (540)
. ..+|+.|++++|.+++ +|..+ .+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+
T Consensus 400 l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 400 L---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2 2456667777777663 44322 35666777777766 566666667777777777777776655544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=7.5e-24 Score=193.48 Aligned_cols=353 Identities=23% Similarity=0.253 Sum_probs=260.5
Q ss_pred CC-cccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEccc-CcCccccchhhhcCCCCCCEEEccCCcccccCCccc
Q 045304 2 IP-HEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSN-NSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFI 79 (540)
Q Consensus 2 lp-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 79 (540)
|| .+|+.+++|+.||||+|+|+.+-|++|.++..|.+|-+.+ |+|+ .+|...|.++..|+.|.+.-|++.....+.|
T Consensus 82 iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al 160 (498)
T KOG4237|consen 82 IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDAL 160 (498)
T ss_pred CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHH
Confidence 44 4699999999999999999999999999999999887766 9998 9999999999999999999999998888999
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCC-Cc------cccccCCC------------------
Q 045304 80 FNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTS-DL------NFLSSLSN------------------ 134 (540)
Q Consensus 80 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~------~~~~~l~~------------------ 134 (540)
..+++|..|.+.+|.+..+.-..|..+..++++.+..|.+...-. .| ..+..++.
T Consensus 161 ~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~ 240 (498)
T KOG4237|consen 161 RDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQED 240 (498)
T ss_pred HHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccc
Confidence 999999999999999985555589999999999988876332100 00 00011111
Q ss_pred -------CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCcccc
Q 045304 135 -------CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLS 207 (540)
Q Consensus 135 -------l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 207 (540)
...+..--.+.+......|...+..+ ++|+.|++++|++++.-+.+|.....++.|.|..|++...-...|.
T Consensus 241 a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L-~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~ 319 (498)
T KOG4237|consen 241 ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKL-PNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ 319 (498)
T ss_pred hhhhhhhHHhHHHhhccccCcCCcChHHHHhhc-ccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh
Confidence 11111112234445666676678888 8999999999999999999999999999999999999877677899
Q ss_pred CCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccc-----------------cCccCCCCCCCCEeeCCCCCC
Q 045304 208 KLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRS-----------------IPACFSNLASLRTLSLGSNEL 270 (540)
Q Consensus 208 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~l~~L~~L~l~~n~l 270 (540)
++..|+.|+|.+|+++-.-|.+|..+.+|.+|.+-.|.+... .|.. .....++.+.++++.+
T Consensus 320 ~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C-q~p~~~~~~~~~dv~~ 398 (498)
T KOG4237|consen 320 GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC-QSPGFVRQIPISDVAF 398 (498)
T ss_pred ccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC-CCCchhccccchhccc
Confidence 999999999999999988999999999999999988865310 1110 1122456666666554
Q ss_pred CCC----Cccc---------cCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCc
Q 045304 271 TSI----PLTF---------WNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVG 337 (540)
Q Consensus 271 ~~i----p~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 337 (540)
.+. |+.. ..++-+.++.=-.|.....+|..+. ..-+.+.+.+|.++ .+|.. .+.+| .++++
T Consensus 399 ~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls 472 (498)
T KOG4237|consen 399 GDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLS 472 (498)
T ss_pred cccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccc
Confidence 432 2211 1122233222122222224443332 34566788999888 56665 55677 89999
Q ss_pred CccCcccCCcccCCCCCCCEEECCCC
Q 045304 338 YNRLQGSIPYSIGDLISLKSLNLSNN 363 (540)
Q Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~l~~n 363 (540)
+|++.-.-...|.++.+|.+|-+++|
T Consensus 473 ~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 473 NNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cCceehhhcccccchhhhheeEEecC
Confidence 99988666778888889999888876
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=1.5e-20 Score=196.15 Aligned_cols=203 Identities=23% Similarity=0.406 Sum_probs=104.1
Q ss_pred CCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 045304 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLE 89 (540)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 89 (540)
.+...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..++ ++|+.|++++|.++ .+|..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 35566777777776 4555442 46777777777776 5666542 46777777777766 4454432 3567777
Q ss_pred ccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEc
Q 045304 90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169 (540)
Q Consensus 90 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l 169 (540)
|++|.+. .+|..+. ++|+.|++++|.+... |..+. ++|+.|++++|.+.+. | .. ++.+|+.|++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~L------P~~l~--~sL~~L~Ls~N~Lt~L-P-~~---lp~sL~~L~L 311 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKISCL------PENLP--EELRYLSVYDNSIRTL-P-AH---LPSGITHLNV 311 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccCcc------ccccC--CCCcEEECCCCccccC-c-cc---chhhHHHHHh
Confidence 7777666 3454442 4566666666666543 22221 3566666666665532 2 11 1134555555
Q ss_pred cCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc
Q 045304 170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247 (540)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 247 (540)
++|.++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 312 s~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 312 QSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred cCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC
Confidence 5555442 232221 344455555554442 333221 34444444444444 2333221 34444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=3.5e-20 Score=193.44 Aligned_cols=246 Identities=23% Similarity=0.368 Sum_probs=115.3
Q ss_pred CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 045304 35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL 114 (540)
Q Consensus 35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 114 (540)
+...|+++++.++ .+|..+ .++|+.|+|++|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|+|
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 4455666655555 455433 235556666666555 3443332 35555555555555 2333322 24555555
Q ss_pred cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeecc
Q 045304 115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLG 194 (540)
Q Consensus 115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 194 (540)
++|.+... |..+. .+|+.|++++|.+.. +|..+. ++|+.|+++
T Consensus 249 s~N~L~~L------P~~l~--s~L~~L~Ls~N~L~~---------------------------LP~~l~--~sL~~L~Ls 291 (754)
T PRK15370 249 SINRITEL------PERLP--SALQSLDLFHNKISC---------------------------LPENLP--EELRYLSVY 291 (754)
T ss_pred cCCccCcC------ChhHh--CCCCEEECcCCccCc---------------------------cccccC--CCCcEEECC
Confidence 55555432 11111 245555555555442 333222 244555555
Q ss_pred CCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC
Q 045304 195 GNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274 (540)
Q Consensus 195 ~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip 274 (540)
+|++++ +|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++.+|
T Consensus 292 ~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP 362 (754)
T PRK15370 292 DNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLP 362 (754)
T ss_pred CCcccc-Ccccch--hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCC
Confidence 554442 232221 245555555555542 333221 345555555555543 333332 45555555555555555
Q ss_pred ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccc----ccCCCCcEEeCcCccCc
Q 045304 275 LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTI----GSLKGLQYLFVGYNRLQ 342 (540)
Q Consensus 275 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l~ 342 (540)
..+. ++|+.|++++|.+. .+|..+. ..|+.|++++|+++ .+|..+ ..++.+..|++.+|.++
T Consensus 363 ~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 363 ETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4332 35555555555555 2333332 24555556666555 233322 23355566666666654
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=3.4e-20 Score=180.27 Aligned_cols=89 Identities=20% Similarity=0.242 Sum_probs=48.3
Q ss_pred cccccCcceEEcccceeeecCccccc-----cCCCCcEEeCcCccCcc----cCCcccCCCCCCCEEECCCCcCccc---
Q 045304 301 IENLKVLVGIDFSVNNFSGVIPTTIG-----SLKGLQYLFVGYNRLQG----SIPYSIGDLISLKSLNLSNNNLSGT--- 368 (540)
Q Consensus 301 ~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~--- 368 (540)
+..+++|++|++++|.+++.....+. ..+.|+.|++++|.++. .+...+..+++|+++++++|.++..
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 33445555556665555532222211 13567777777776651 2233445556777777777777643
Q ss_pred -cCccccCC-CCCCeEEcccCcc
Q 045304 369 -IPVSLEKL-SYLEDLNLSFNKL 389 (540)
Q Consensus 369 -~~~~~~~~-~~L~~l~l~~n~l 389 (540)
....+... +.|+.+++.+|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHhhcCCchhhcccCCCCC
Confidence 22333334 5677777776653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=5.6e-20 Score=178.79 Aligned_cols=62 Identities=21% Similarity=0.156 Sum_probs=33.8
Q ss_pred EEEccCCccc-ccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCC
Q 045304 87 LLELGDNSFS-GFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLD 149 (540)
Q Consensus 87 ~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 149 (540)
.|+|..+.++ ......+..+.+|+.|++.++.++..... .++..+...++++.++++++.+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~-~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAK-ALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHH-HHHHHHhhCCCceEEeccccccC
Confidence 3555566555 22334455566677777777766432111 13444555666677777666554
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=7.6e-20 Score=148.44 Aligned_cols=155 Identities=29% Similarity=0.506 Sum_probs=87.2
Q ss_pred cCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCE
Q 045304 183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRT 262 (540)
Q Consensus 183 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 262 (540)
.++.+++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..++.+++|+.|+++.|++. ..|..|+.+|.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34455666666666666 44445666666666666666666 45666666666666666666664 56666666666666
Q ss_pred eeCCCCCCCC--CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304 263 LSLGSNELTS--IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR 340 (540)
Q Consensus 263 L~l~~n~l~~--ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 340 (540)
||+.+|++.+ +|..|+.++.|+.|+|++|.+. .+|..++.+++|+.|.+..|.+- .+|..++.+..|++|++.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 6666666654 5555555555555555555544 33444444444444444444443 334444444444444444444
Q ss_pred Cc
Q 045304 341 LQ 342 (540)
Q Consensus 341 l~ 342 (540)
++
T Consensus 185 l~ 186 (264)
T KOG0617|consen 185 LT 186 (264)
T ss_pred ee
Confidence 43
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.6e-18 Score=140.87 Aligned_cols=162 Identities=28% Similarity=0.493 Sum_probs=141.9
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
.++..|.+++|.++ .+|+.+..+.+|+.|++.+|++. .+|..++.++.|+.|++.-|++. .+|..|+.++.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 45666777777776 56777889999999999999998 67888999999999999999988 78999999999999999
Q ss_pred CCCCCcc-ccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeec
Q 045304 242 GSNKFSR-SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV 320 (540)
Q Consensus 242 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 320 (540)
.+|++.. .+|..|..++.|+.|.+++|.+.-+|..++.+++|+.|.+.+|.+. .+|..++.++.|+.|++.+|.++ .
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 9998864 5788888899999999999999999999999999999999999987 78999999999999999999998 6
Q ss_pred CccccccC
Q 045304 321 IPTTIGSL 328 (540)
Q Consensus 321 ~~~~~~~l 328 (540)
+|..++++
T Consensus 188 lppel~~l 195 (264)
T KOG0617|consen 188 LPPELANL 195 (264)
T ss_pred cChhhhhh
Confidence 67666543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.5e-14 Score=151.08 Aligned_cols=118 Identities=36% Similarity=0.591 Sum_probs=101.6
Q ss_pred CcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcc
Q 045304 306 VLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLS 385 (540)
Q Consensus 306 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~ 385 (540)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeCCCCC--CCCCCCcccccCCCCCCCCCCCCCCCCC
Q 045304 386 FNKLAGEIPRGG--SFGNFSAESFEGNELLCGSPNLRVPPCK 425 (540)
Q Consensus 386 ~n~l~~~~p~~~--~~~~~~~~~~~~n~~~c~~~~~~~~~~~ 425 (540)
+|+++|.+|..- .........+.+|+.+|+.|.. ++|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l--~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL--RACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCC--CCCc
Confidence 999999998641 1223456778999999987653 5674
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.32 E-value=4.9e-12 Score=132.27 Aligned_cols=113 Identities=37% Similarity=0.525 Sum_probs=104.0
Q ss_pred CCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECC
Q 045304 282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS 361 (540)
Q Consensus 282 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 361 (540)
.++.|+|++|.+.|.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccCccccCC-CCCCeEEcccCcceeeCC
Q 045304 362 NNNLSGTIPVSLEKL-SYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 362 ~n~l~~~~~~~~~~~-~~L~~l~l~~n~l~~~~p 394 (540)
+|+++|.+|..+... ..+..+++.+|...+..|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999988653 467789999998766544
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=9.9e-14 Score=133.56 Aligned_cols=167 Identities=31% Similarity=0.464 Sum_probs=95.1
Q ss_pred EccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc
Q 045304 168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247 (540)
Q Consensus 168 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 247 (540)
+++.|.+. .+|..+..+-.|+.+.+..|.+. .+|..+..+..|+.++|+.|+++ .+|..++.++ |+.|.+++|+++
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc
Confidence 34444443 44444555555555555555555 45555555566666666666655 4555555554 555666666554
Q ss_pred cccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccccc
Q 045304 248 RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS 327 (540)
Q Consensus 248 ~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 327 (540)
.+|..++..+.|..|+.+.|.+..+|..+.++.+|+.|++..|++. .+|..+. .-.|..||+|.|+++ .+|..|..
T Consensus 157 -~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~ 232 (722)
T KOG0532|consen 157 -SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRK 232 (722)
T ss_pred -cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhh
Confidence 4555555555666666666666666666666666666666666655 3333444 234556666666665 55666666
Q ss_pred CCCCcEEeCcCccCc
Q 045304 328 LKGLQYLFVGYNRLQ 342 (540)
Q Consensus 328 l~~L~~L~l~~n~l~ 342 (540)
++.|++|-|.+|.++
T Consensus 233 m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhheeeeeccCCCC
Confidence 666666666666665
No 26
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.28 E-value=3.3e-12 Score=124.04 Aligned_cols=63 Identities=48% Similarity=0.706 Sum_probs=55.7
Q ss_pred ccccccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhcC
Q 045304 478 TWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVECN 540 (540)
Q Consensus 478 ~~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~~ 540 (540)
..+.|+|.|++.||++|+++++||+||||.||||.++||+.||||++.....+..++|.+||+
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~ 123 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVE 123 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHH
Confidence 567899999999999999999999999999999999999999999997654321577999984
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=4.9e-13 Score=124.98 Aligned_cols=210 Identities=20% Similarity=0.264 Sum_probs=127.4
Q ss_pred cCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccc
Q 045304 80 FNASKLSLLELGDNSFSGFIP-DTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVG 158 (540)
Q Consensus 80 ~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 158 (540)
+++.+|+.+.|.++....... .....|++++.|+|+.|-+..... +......+++|+.|+++.|.+..... ....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~---v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFP---VLKIAEQLPSLENLNLSSNRLSNFIS-SNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHH---HHHHHHhcccchhcccccccccCCcc-ccch
Confidence 466788888888887663221 245678888888888887765422 34446678888888888888776554 2222
Q ss_pred cccccCcEEEccCCcceec-CChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCC--ccccCCCC
Q 045304 159 NLSHSLEYFYMPNCNVSGG-IPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP--NNICRLTE 235 (540)
Q Consensus 159 ~l~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~ 235 (540)
...+.|+.|.++.|.++-. +-..+..+|+|+.|++..|...........-++.|+.|+|++|.+-. .+ ...+.++.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccc
Confidence 2336788888888877632 22234556778888887775332333334456677777777776652 22 34556677
Q ss_pred CCeEEcCCCCCccc-cCcc-----CCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEECCCCccc
Q 045304 236 LYELDLGSNKFSRS-IPAC-----FSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 236 L~~L~l~~n~l~~~-~~~~-----~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~l~ 294 (540)
|+.|+++.+.+... .|+. ...+++|++|++..|++.+++. .+..+++|+.|.+..|.+.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 77777777766532 2222 2345666666666666655443 2333444444444444443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=1.1e-13 Score=133.28 Aligned_cols=193 Identities=27% Similarity=0.422 Sum_probs=157.2
Q ss_pred CCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeC
Q 045304 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSL 265 (540)
Q Consensus 186 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 265 (540)
.--...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..++++..|++|||+.|+++ .+|..+..++ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 34456788999988 78888888888999999999887 78888999999999999999987 5666666654 899999
Q ss_pred CCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304 266 GSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI 345 (540)
Q Consensus 266 ~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (540)
++|+++.+|..++....|..|+.+.|++. .+|..++.+..|+.|.+..|++. .+|..+..+ .|..||++.|+++ .+
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YL 226 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ec
Confidence 99999999998888889999999999988 67788888999999999999887 566677754 6889999999998 88
Q ss_pred CcccCCCCCCCEEECCCCcCccccCccccC---CCCCCeEEcccC
Q 045304 346 PYSIGDLISLKSLNLSNNNLSGTIPVSLEK---LSYLEDLNLSFN 387 (540)
Q Consensus 346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~l~l~~n 387 (540)
|..|..+..|++|-|.+|.+. ..|..+.. ..-.++|+..-|
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 999999999999999999988 55554432 222345555544
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=6.5e-12 Score=125.63 Aligned_cols=178 Identities=38% Similarity=0.564 Sum_probs=81.8
Q ss_pred CCCCeeeeeCccccCcCCccccCCC-CCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEEC
Q 045304 210 QKLQGLSLADNKLEGSIPNNICRLT-ELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNF 288 (540)
Q Consensus 210 ~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L 288 (540)
+.++.+++.+|.++ .++.....+. +|+.|+++.|.+. .+|..+..+++|+.|++++|+++.+|......+.|+.|++
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 33444444444444 2333333332 4444444444443 2223344444444444444444444444334444444444
Q ss_pred CCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304 289 SSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT 368 (540)
Q Consensus 289 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (540)
++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..++.+++++.|++++|+++..
T Consensus 194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred cCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccc
Confidence 444444 23333233334555555555322 23344445555555555555554 2244455555556666666655532
Q ss_pred cCccccCCCCCCeEEcccCcceeeCC
Q 045304 369 IPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 369 ~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
.+ +..+.+++.+++++|.+....|
T Consensus 271 ~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 271 SS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cc--ccccCccCEEeccCccccccch
Confidence 22 5555556666666655554433
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=1.1e-11 Score=124.06 Aligned_cols=185 Identities=35% Similarity=0.556 Sum_probs=126.8
Q ss_pred ccCCCCCCeeeccCCccccccCccccCCC-CCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCC
Q 045304 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQ-KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASL 260 (540)
Q Consensus 182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 260 (540)
+..++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+..+++|+.|+++.|+++ .+|...+..++|
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred hhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 334456677777777766 4444444553 7777777777776 45455667777777777777776 344444466777
Q ss_pred CEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR 340 (540)
Q Consensus 261 ~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 340 (540)
+.|++++|+++.+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..+..+..++++++|++++|.
T Consensus 189 ~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 189 NNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence 7778888877777776555566777778777533 34555667777777777777776 336667777888888888888
Q ss_pred CcccCCcccCCCCCCCEEECCCCcCccccCccc
Q 045304 341 LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSL 373 (540)
Q Consensus 341 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (540)
++. ++. ++.+.+++.|++++|.+....|...
T Consensus 267 i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 267 ISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred ccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence 874 333 7788888888888888886665544
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.16 E-value=3.1e-11 Score=128.96 Aligned_cols=132 Identities=24% Similarity=0.288 Sum_probs=104.4
Q ss_pred CCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCc--CccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304 7 GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNS--LSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK 84 (540)
Q Consensus 7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 84 (540)
.+....+.+.+.+|.+. .++... .+++|++|-+..|. +. .++..+|..++.|++|||++|.--+.+|..++++-+
T Consensus 520 ~~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred cchhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 33467788888888776 344433 44589999999986 44 788887889999999999998766789999999999
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCC
Q 045304 85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP 147 (540)
Q Consensus 85 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 147 (540)
|++|+++++.+. .+|..++++..|.+|++..+..... ++.....+++|++|.+....
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~-----~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLES-----IPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheecccccccccc-----ccchhhhcccccEEEeeccc
Confidence 999999999988 7899999999999999988765443 33445568888988886654
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=5.8e-12 Score=117.89 Aligned_cols=208 Identities=24% Similarity=0.256 Sum_probs=125.8
Q ss_pred cCCCCCCeeeccCCccccccC--ccccCCCCCCeeeeeCccccCc--CCccccCCCCCCeEEcCCCCCccccCccC-CCC
Q 045304 183 SNLTNLIIIYLGGNKLNGSIP--ITLSKLQKLQGLSLADNKLEGS--IPNNICRLTELYELDLGSNKFSRSIPACF-SNL 257 (540)
Q Consensus 183 ~~l~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l 257 (540)
.++.+|+.+.+++.... ..+ .....|++++.|+|+.|-+..- +......+++|+.|+++.|.+........ ..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34566666666666554 222 2445667777777777655422 11233456777777777776653222211 235
Q ss_pred CCCCEeeCCCCCCCC--CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecC-ccccccCCCCcEE
Q 045304 258 ASLRTLSLGSNELTS--IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVI-PTTIGSLKGLQYL 334 (540)
Q Consensus 258 ~~L~~L~l~~n~l~~--ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 334 (540)
+.|+.|.++.|.++. +-.....+|+|+.|+|..|.....-......+..|+.|||++|++.... -...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 677778888777764 4445556677888888877533333333445667788888888775332 1345677788888
Q ss_pred eCcCccCcccC-Ccc-----cCCCCCCCEEECCCCcCccc-cCccccCCCCCCeEEcccCccee
Q 045304 335 FVGYNRLQGSI-PYS-----IGDLISLKSLNLSNNNLSGT-IPVSLEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 335 ~l~~n~l~~~~-~~~-----~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~~ 391 (540)
+++.+.+...- |+. ...+++|++|+++.|++... .-..+..+++|+.+.+..|++..
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 88888776432 222 24567888888888887522 11234556677777777777653
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.1e-11 Score=110.49 Aligned_cols=135 Identities=24% Similarity=0.222 Sum_probs=107.1
Q ss_pred CCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcE
Q 045304 254 FSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY 333 (540)
Q Consensus 254 ~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 333 (540)
......|+.+|+++|.++.+.+...-+|.++.|++++|.+... +.+..+.+|+.||||+|.++ .+..+-..+.+.++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 3344578889999999988888888888999999999988733 23778899999999999887 45566677889999
Q ss_pred EeCcCccCcccCCcccCCCCCCCEEECCCCcCcccc-CccccCCCCCCeEEcccCcceeeC
Q 045304 334 LFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTI-PVSLEKLSYLEDLNLSFNKLAGEI 393 (540)
Q Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~l~~~~ 393 (540)
|.|+.|.+.. -..+..+-+|..||+++|++.... ...++++|-|+.+.+.+|++.+.+
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 9999998852 245667778999999999987442 245788999999999999998643
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.12 E-value=4.6e-12 Score=115.39 Aligned_cols=183 Identities=23% Similarity=0.235 Sum_probs=115.6
Q ss_pred cCCCCCCeeeeeCccccCcCCcc----ccCCCCCCeEEcCCCCCcccc-------------CccCCCCCCCCEeeCCCCC
Q 045304 207 SKLQKLQGLSLADNKLEGSIPNN----ICRLTELYELDLGSNKFSRSI-------------PACFSNLASLRTLSLGSNE 269 (540)
Q Consensus 207 ~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~ 269 (540)
..++.|++++|++|-+....++. +.+++.|++|+|.+|.+...- ......-+.|+++...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 34445555555555544332222 234555566666555543110 1112345678888888888
Q ss_pred CCCCC-----ccccCCCCCcEEECCCCcccCC----CccccccccCcceEEcccceeeec----CccccccCCCCcEEeC
Q 045304 270 LTSIP-----LTFWNLKDILYLNFSSNFLTGP----LPLEIENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYLFV 336 (540)
Q Consensus 270 l~~ip-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l 336 (540)
+..-+ ..+...+.|+.+.+..|.+... +...+..++.|+.|||.+|-++.. +...+..++.|++|++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 77633 3466667888888888877522 234567788888888888887643 3345667788889999
Q ss_pred cCccCcccCCcc----c-CCCCCCCEEECCCCcCccc----cCccccCCCCCCeEEcccCcc
Q 045304 337 GYNRLQGSIPYS----I-GDLISLKSLNLSNNNLSGT----IPVSLEKLSYLEDLNLSFNKL 389 (540)
Q Consensus 337 ~~n~l~~~~~~~----~-~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~l 389 (540)
++|.+...-..+ + ...|+|+.|++.+|.++.. +..++...+.|..|++++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 988876432222 2 3467889999999988732 223455678888999988877
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=3.8e-11 Score=102.67 Aligned_cols=107 Identities=26% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCCCCCEEeccCcccccCCCcccc-CCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccc-cCCCCC
Q 045304 8 NLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFI-FNASKL 85 (540)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L 85 (540)
+..++++|+|++|.++. + +.++ .+.+|+.|++++|.++ .++.. ..+++|+.|++++|.++. +...+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~~l--~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLEGL--PGLPRLKTLDLSNNRISS-ISEGLDKNLPNL 90 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT-
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-cccCc--cChhhhhhcccCCCCCCc-cccchHHhCCcC
Confidence 34445556666665552 2 2233 3455556666665555 34322 345555555555555552 22222 235555
Q ss_pred CEEEccCCcccccC-CccccCCCCCCEEECcCcccc
Q 045304 86 SLLELGDNSFSGFI-PDTFGNLRNLNKVTLYNNYLT 120 (540)
Q Consensus 86 ~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~ 120 (540)
++|++++|++.... -..+..+++|++|++.+|.+.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 55555555554321 123444555555555555544
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=3.6e-12 Score=116.07 Aligned_cols=135 Identities=16% Similarity=0.216 Sum_probs=86.3
Q ss_pred CCCCCCeEEcCCCCCccc----cCccCCCCCCCCEeeCCCCCCCC-----CCccccCCCCCcEEECCCCcccCC----Cc
Q 045304 232 RLTELYELDLGSNKFSRS----IPACFSNLASLRTLSLGSNELTS-----IPLTFWNLKDILYLNFSSNFLTGP----LP 298 (540)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~-----ip~~~~~l~~L~~L~L~~n~l~~~----~~ 298 (540)
.-+.|+.+....|++... +...|...+.|+.+.++.|.+.. +...+.++++|+.|+|.+|.++.. +.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 345666666666665421 23345556677777777776653 233566777777777777776532 33
Q ss_pred cccccccCcceEEcccceeeecCcccc-----ccCCCCcEEeCcCccCccc----CCcccCCCCCCCEEECCCCcCc
Q 045304 299 LEIENLKVLVGIDFSVNNFSGVIPTTI-----GSLKGLQYLFVGYNRLQGS----IPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 299 ~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
..+..+++|+.|++++|.+...-...| ...++|+.|.+.+|.++.. +.......+.|..|+|++|.+.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 455667778888888877764433222 2457888999999887632 2334455788899999999883
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.3e-10 Score=124.25 Aligned_cols=259 Identities=19% Similarity=0.192 Sum_probs=163.4
Q ss_pred CCCCCCEEeccCcc--cccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCC
Q 045304 8 NLRNLELLVLSHNK--LVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKL 85 (540)
Q Consensus 8 ~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 85 (540)
.+++|++|-+..|. +.....+.|..++.|++|||++|.--+.+|..+ +.+-+|++|+++++.+. .+|..+.++..|
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 35589999999986 443333447789999999999987667899999 78999999999999998 899999999999
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCc
Q 045304 86 SLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE 165 (540)
Q Consensus 86 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~ 165 (540)
.+|++..+.....+|.....+++|++|.+.......... ....+.++.+|+.+..................+....+
T Consensus 621 ~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~---~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 621 IYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL---LLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQ 697 (889)
T ss_pred heeccccccccccccchhhhcccccEEEeeccccccchh---hHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhH
Confidence 999999888766667777789999999998765222111 34456667777777664443310001011111212233
Q ss_pred EEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccC------CCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304 166 YFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSK------LQKLQGLSLADNKLEGSIPNNICRLTELYEL 239 (540)
Q Consensus 166 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 239 (540)
.+.+..+... ..+..+..+.+|+.|.+.++.+.......... ++++..+...++... ..+.+.-..++|+.|
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSL 775 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEE
Confidence 3443333332 34456778888999999888776332222111 223333333333222 122223345788888
Q ss_pred EcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC
Q 045304 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI 273 (540)
Q Consensus 240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 273 (540)
.+..+.....+.+....+..+..+.+..+.+.+.
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred EEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 8887765544444444444555444555544443
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=8.7e-11 Score=104.78 Aligned_cols=130 Identities=25% Similarity=0.362 Sum_probs=64.0
Q ss_pred CCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS 264 (540)
Q Consensus 185 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 264 (540)
.+.|+++|+++|.++ .+.++..-.|.++.|++++|++... ..+..+++|+.|||++|.++. +...-..+-++++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeee
Confidence 344555555555554 3344444455555555555555422 224555555555555555442 222223344555555
Q ss_pred CCCCCCCCCCccccCCCCCcEEECCCCcccCCC-ccccccccCcceEEcccceeee
Q 045304 265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL-PLEIENLKVLVGIDFSVNNFSG 319 (540)
Q Consensus 265 l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~ 319 (540)
++.|.+.++. .+..+.+|..|++++|++...- -..+++++-|+.+.|.+|.+.+
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 5555544432 2334455555555555554211 1234555666666666666654
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.00 E-value=3.7e-10 Score=96.64 Aligned_cols=125 Identities=26% Similarity=0.316 Sum_probs=35.0
Q ss_pred CCCCCCeEEcCCCCCccccCccCC-CCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceE
Q 045304 232 RLTELYELDLGSNKFSRSIPACFS-NLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGI 310 (540)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 310 (540)
+..++++|+|.+|.|+.. +.++ .+.+|+.|++++|.++.++ .+..++.|+.|
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~-------------------------~l~~L~~L~~L 69 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE-------------------------GLPGLPRLKTL 69 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-------------------------T----TT--EE
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc-------------------------CccChhhhhhc
Confidence 334455556665555422 1232 3445555555555555433 23334555555
Q ss_pred EcccceeeecCccccccCCCCcEEeCcCccCcccC-CcccCCCCCCCEEECCCCcCccccCc----cccCCCCCCeEEc
Q 045304 311 DFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI-PYSIGDLISLKSLNLSNNNLSGTIPV----SLEKLSYLEDLNL 384 (540)
Q Consensus 311 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~~~L~~l~l 384 (540)
++++|.++...+.....+++|++|++++|++...- -..+..+++|+.|++.+|+++.. +. .+..+|+|+.||-
T Consensus 70 ~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 70 DLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp E--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred ccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 55555555322211124556666666666655321 13455667777777777776632 22 2456777777764
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=2e-09 Score=75.65 Aligned_cols=61 Identities=41% Similarity=0.553 Sum_probs=41.0
Q ss_pred CCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcc
Q 045304 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNF 71 (540)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 71 (540)
++|++|++++|+++...+..|.++++|++|++++|.++ .+++..|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence 45677777777777555566667777777777777766 56666666777777777776653
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.84 E-value=3.6e-10 Score=113.24 Aligned_cols=246 Identities=28% Similarity=0.313 Sum_probs=128.0
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCC
Q 045304 57 RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCK 136 (540)
Q Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~ 136 (540)
.+..++.+++..|.+.. +-..+..+++|+.|++.+|.+..+ ...+..+++|++|++++|.++.. ..+..++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i-------~~l~~l~ 140 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL-------EGLSTLT 140 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc-------cchhhcc
Confidence 34455555555555442 223345556666666666665532 11245566666666666666554 2344455
Q ss_pred CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCC-hhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304 137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP-EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL 215 (540)
Q Consensus 137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 215 (540)
.|+.|++++|.+... ..+..+ ..|+.+++++|.+...-+ . +..+.+++.+++.+|.+... ..+..+..+..+
T Consensus 141 ~L~~L~l~~N~i~~~---~~~~~l-~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 141 LLKELNLSGNLISDI---SGLESL-KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLL 213 (414)
T ss_pred chhhheeccCcchhc---cCCccc-hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHh
Confidence 566666666665543 222223 556666666666653332 2 45666677777777766522 223344445555
Q ss_pred eeeCccccCcCCccccCCCC--CCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcc
Q 045304 216 SLADNKLEGSIPNNICRLTE--LYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL 293 (540)
Q Consensus 216 ~l~~n~~~~~~p~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l 293 (540)
++..|.++..-+ +..+.. |+.+++++|.+.. .+..+..+..+..+++.+|.+..+.. +...+.+..+.+..|.+
T Consensus 214 ~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 214 SLLDNKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKL 289 (414)
T ss_pred hcccccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc-ccccchHHHhccCcchh
Confidence 666666553221 222222 6677777776652 22445556677777777776665322 22234444555555554
Q ss_pred cCC---Cccc-cccccCcceEEcccceeeecCc
Q 045304 294 TGP---LPLE-IENLKVLVGIDFSVNNFSGVIP 322 (540)
Q Consensus 294 ~~~---~~~~-~~~l~~L~~L~l~~n~l~~~~~ 322 (540)
... .... ......++.+.+..|......+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cchhhhhccccccccccccccccccCccccccc
Confidence 421 1111 3445666777777776654443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.83 E-value=5e-10 Score=112.19 Aligned_cols=268 Identities=23% Similarity=0.242 Sum_probs=186.3
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCC
Q 045304 58 LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKT 137 (540)
Q Consensus 58 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~ 137 (540)
.+.++.++...+.....--. ...+..++.+.+..|.+.. +-..+..+++|+.|++.+|.+.... ..+..+++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~------~~l~~~~~ 119 (414)
T KOG0531|consen 48 PSDLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE------NLLSSLVN 119 (414)
T ss_pred cchhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc------cchhhhhc
Confidence 34455555555543311111 1456777777888888774 3345788899999999999998752 22778999
Q ss_pred CCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccC-ccccCCCCCCeee
Q 045304 138 LTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIP-ITLSKLQKLQGLS 216 (540)
Q Consensus 138 L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ 216 (540)
|++|++++|.+....+ +..+ ..|+.|++.+|.+... ..+..++.|+.+++++|++...-+ . ...+..++.++
T Consensus 120 L~~L~ls~N~I~~i~~---l~~l-~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~ 192 (414)
T KOG0531|consen 120 LQVLDLSFNKITKLEG---LSTL-TLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELD 192 (414)
T ss_pred chheeccccccccccc---hhhc-cchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHh
Confidence 9999999999987743 4444 5699999999998643 345668899999999999985444 2 47788999999
Q ss_pred eeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCC--CCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304 217 LADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLAS--LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 217 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~ 294 (540)
+.+|.+... ..+..+..+..+++..|.++..-+ +..+.. |+.+++++|.+..++..+..+..+..+++.+|++.
T Consensus 193 l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 193 LGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccCCchhcc--cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 999988732 334455566666888888764432 222333 89999999999988777777888999999999886
Q ss_pred CCCccccccccCcceEEcccceeeec---Ccc-ccccCCCCcEEeCcCccCcccCC
Q 045304 295 GPLPLEIENLKVLVGIDFSVNNFSGV---IPT-TIGSLKGLQYLFVGYNRLQGSIP 346 (540)
Q Consensus 295 ~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~-~~~~l~~L~~L~l~~n~l~~~~~ 346 (540)
..-. +.....+..+....|.+... ... .....+.++.+.+..|.+....+
T Consensus 269 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 269 NLEG--LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccc--ccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 4322 33445555666666665522 111 14456778888888888775544
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.9e-09 Score=74.13 Aligned_cols=59 Identities=32% Similarity=0.497 Sum_probs=34.4
Q ss_pred CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc
Q 045304 35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNS 94 (540)
Q Consensus 35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 94 (540)
+|++|++++|.++ .+|...|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4556666666655 5555555556666666666666555555555555555555555554
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.9e-10 Score=99.98 Aligned_cols=179 Identities=21% Similarity=0.179 Sum_probs=108.4
Q ss_pred CCCEEEccCCccccc-CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC
Q 045304 60 NLEVLRMRSNNFCGT-IPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL 138 (540)
Q Consensus 60 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L 138 (540)
.|+.|||+...++.. +-..++.|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+.--.. .. .--.+.+|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~--n~-~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTE--NA-LQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccch--hH-HHHHHHhhhhH
Confidence 588889988877632 233456788899999999888888878888888999999887643221 10 22346788888
Q ss_pred CEEECcCCCCCccCCccccccccccCcEEEccCCcce---ecCChhccCCCCCCeeeccCCc-cccccCccccCCCCCCe
Q 045304 139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS---GGIPEEISNLTNLIIIYLGGNK-LNGSIPITLSKLQKLQG 214 (540)
Q Consensus 139 ~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~ 214 (540)
..|+|+.|.+........+....++|..|+++++.-. ..+.--...+++|.+|||+++. ++...-..|..++.|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 9999998887665432334455567777777765321 1112223456666666666553 22222233445566666
Q ss_pred eeeeCccccCcCCc---cccCCCCCCeEEcCC
Q 045304 215 LSLADNKLEGSIPN---NICRLTELYELDLGS 243 (540)
Q Consensus 215 L~l~~n~~~~~~p~---~~~~l~~L~~L~l~~ 243 (540)
|.++.|.. .+|. .+...|+|.+|++.+
T Consensus 343 lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 343 LSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred eehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 66655542 2332 233445555555443
No 45
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=98.45 E-value=2.4e-07 Score=88.31 Aligned_cols=37 Identities=49% Similarity=0.750 Sum_probs=29.9
Q ss_pred CeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhh
Q 045304 498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVE 538 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E 538 (540)
.+||+|+||.||||.|. ++.||||++... ..++|.+|
T Consensus 216 eli~~Grfg~V~KaqL~-~~~VAVKifp~~---~kqs~~~E 252 (534)
T KOG3653|consen 216 ELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ---EKQSFQNE 252 (534)
T ss_pred HHhhcCccceeehhhcc-CceeEEEecCHH---HHHHHHhH
Confidence 56999999999999996 599999999543 34556665
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=4.2e-09 Score=105.02 Aligned_cols=180 Identities=29% Similarity=0.234 Sum_probs=120.6
Q ss_pred CccccCCCCCCeeeeeCccccCcCCccccCC-CCCCeEEcCCCCCc----------cccCccCCCCCCCCEeeCCCCCCC
Q 045304 203 PITLSKLQKLQGLSLADNKLEGSIPNNICRL-TELYELDLGSNKFS----------RSIPACFSNLASLRTLSLGSNELT 271 (540)
Q Consensus 203 ~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l-~~L~~L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~ 271 (540)
|-.+..+..|+.|.+.++.+.. . ..+..+ ..|++|.- .|.+. |.+..++. ...|.+.++++|.++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH
Confidence 5556778889999998887753 1 111111 22333321 12111 11111111 135778888899998
Q ss_pred CCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304 272 SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351 (540)
Q Consensus 272 ~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 351 (540)
.+...+.-++.++.|+|++|+++..- .+..++.|++|||++|.+.....-....|. |+.|.+++|.++.. ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence 88888888889999999999988543 678889999999999999844333444554 89999999988732 34678
Q ss_pred CCCCCEEECCCCcCccccC-ccccCCCCCCeEEcccCccee
Q 045304 352 LISLKSLNLSNNNLSGTIP-VSLEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 352 l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~l~~ 391 (540)
+.+|+.||+++|-+.+.-. ..+..+..|..|.+.+|++.+
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8889999999998764321 123456678888899998754
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=7.9e-09 Score=103.12 Aligned_cols=157 Identities=25% Similarity=0.243 Sum_probs=76.8
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccC-CC--------------------------------CCCEEEcccCcCccc
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFN-VS--------------------------------TLKVFEVSNNSLSGS 49 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~--------------------------------~L~~L~l~~n~l~~~ 49 (540)
|-++..+++|++|.|.++++... ..+.. -. .|.+.+.++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 44577788999999999887521 11111 11 2333344444443 2
Q ss_pred cchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCcccc
Q 045304 50 LSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL 129 (540)
Q Consensus 50 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 129 (540)
+.... .-++.|+.|+|++|+++.. +.+..+++|++|||++|.+.....-....+. |+.|.+++|.++..
T Consensus 179 mD~SL-qll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL------- 247 (1096)
T KOG1859|consen 179 MDESL-QLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL------- 247 (1096)
T ss_pred HHHHH-HHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-------
Confidence 22222 3345556666666655522 1455555666666666655522111122222 55556666555542
Q ss_pred ccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcc
Q 045304 130 SSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174 (540)
Q Consensus 130 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 174 (540)
..+.++.+|+.||++.|-+.+.-....+..+ ..|..|.|.+|.+
T Consensus 248 ~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 248 RGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred hhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 2345555566666666555443222223333 3455555555543
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=8.5e-08 Score=85.96 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=90.8
Q ss_pred CCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceec-CChhccC
Q 045304 106 LRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGG-IPEEISN 184 (540)
Q Consensus 106 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-~~~~l~~ 184 (540)
.+.++++||.+|.++...+ +...+.++|.|+.|+|+.|++...|. ..-... .+|++|.|.+..+.-. ....+..
T Consensus 70 ~~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~-~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSLSSDIK-SLPLPL-KNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred hhhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcCCCccc-cCcccc-cceEEEEEcCCCCChhhhhhhhhc
Confidence 4566666666666655322 33445566666666666666654433 111112 4566666666555322 2233556
Q ss_pred CCCCCeeeccCCcccccc--Ccccc-CCCCCCeeeeeCc---------cccCcCCccccCCCCCCeEEcCCCCCccc-cC
Q 045304 185 LTNLIIIYLGGNKLNGSI--PITLS-KLQKLQGLSLADN---------KLEGSIPNNICRLTELYELDLGSNKFSRS-IP 251 (540)
Q Consensus 185 l~~L~~L~l~~n~l~~~~--~~~l~-~l~~L~~L~l~~n---------~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~ 251 (540)
+|.++.|.++.|.+.... ..... ..+.+.++++..| ++... ++++..+.+..|.+... ..
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~e 217 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSE 217 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhh-------cccchheeeecCcccchhhc
Confidence 667777777766332110 00011 1123344444333 33322 34556666666655422 22
Q ss_pred ccCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEECCCCccc
Q 045304 252 ACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 252 ~~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~l~ 294 (540)
..+..++.+..|+|+.|++.+... ++..+++|..|.++++.+.
T Consensus 218 k~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 218 KGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred ccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 334556666677777777766332 4555666666666666654
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.3e-08 Score=91.01 Aligned_cols=181 Identities=18% Similarity=0.173 Sum_probs=118.0
Q ss_pred CCCEEeccCcccc-cCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCc-cccc-CCccccCCCCCCE
Q 045304 11 NLELLVLSHNKLV-GVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN-FCGT-IPHFIFNASKLSL 87 (540)
Q Consensus 11 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~ 87 (540)
.|++||||...++ ..+...+..|++|+.|.+.++.+.+.+...+ +.-.+|+.|+|+.|. ++.. ..--+.+|+.|.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 5888999888776 2234456788899999999998887777777 677889999998774 3311 1123567888999
Q ss_pred EEccCCcccccCCcc-cc-CCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCc
Q 045304 88 LELGDNSFSGFIPDT-FG-NLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE 165 (540)
Q Consensus 88 L~L~~n~~~~~~~~~-~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~ 165 (540)
|+|+.|.+....... +. --++|+.|+|+++.-.-.... +..-...+++|..|||++|.....-....+-++ +.|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh--~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH--LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQ 341 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH--HHHHHHhCCceeeeccccccccCchHHHHHHhc-chhe
Confidence 999888765432211 11 125677788877532211111 222245688888888888764432221334445 6788
Q ss_pred EEEccCCcceecCChh---ccCCCCCCeeeccCCc
Q 045304 166 YFYMPNCNVSGGIPEE---ISNLTNLIIIYLGGNK 197 (540)
Q Consensus 166 ~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~n~ 197 (540)
+|.++.|.. .+|+. +...|.|++|++.++-
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 888888864 34543 4667889999887764
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=3.3e-08 Score=78.19 Aligned_cols=60 Identities=23% Similarity=0.388 Sum_probs=32.2
Q ss_pred cCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304 305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 305 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
+.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|.-+..+.++-.|+..+|.+.
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 34455555555555 44555555555666666665555 33444444555555666555554
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=1.4e-07 Score=83.55 Aligned_cols=87 Identities=25% Similarity=0.306 Sum_probs=42.2
Q ss_pred CCCCCEEeccCcccccCCC----ccccCCCCCCEEEcccCcC---ccccchh------hhcCCCCCCEEEccCCcccccC
Q 045304 9 LRNLELLVLSHNKLVGVIP----TKVFNVSTLKVFEVSNNSL---SGSLSSI------AGVRLPNLEVLRMRSNNFCGTI 75 (540)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l---~~~~~~~------~~~~l~~L~~L~L~~n~l~~~~ 75 (540)
+..++.++||+|-+..... ..+.+-.+|+..++++-.. ...+++. +..+||+|+..+|++|.|....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4556666666666543322 2233445555555554311 1112211 1135566666666666655444
Q ss_pred Ccc----ccCCCCCCEEEccCCcc
Q 045304 76 PHF----IFNASKLSLLELGDNSF 95 (540)
Q Consensus 76 ~~~----l~~l~~L~~L~L~~n~~ 95 (540)
|.. ++.-+.|++|.+++|.+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCC
Confidence 433 23445566666665554
No 52
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=98.20 E-value=9.8e-07 Score=89.33 Aligned_cols=60 Identities=25% Similarity=0.449 Sum_probs=48.0
Q ss_pred ccccHHHHHHHhccCCc---------cCeeccCCCCcEEEEEec----CCCEEEEEEecccc-CCcchhhhhhc
Q 045304 480 RRFSYLELCRATDRFSE---------NNLIGRGGFGSVYKARIQ----DGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 480 ~~~~~~~l~~at~~f~~---------~~~ig~G~~G~Vykg~l~----~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
..++|+|--+|...|.. +.+||.|.||.||+|.|. ....||||.|+.+. .+.+.+|+.|.
T Consensus 608 DP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EA 681 (996)
T KOG0196|consen 608 DPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEA 681 (996)
T ss_pred CCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhh
Confidence 45788888777776653 789999999999999982 24689999999876 34567899885
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=2.7e-07 Score=82.81 Aligned_cols=229 Identities=17% Similarity=0.211 Sum_probs=141.3
Q ss_pred CCCEEeccCcccccCC-Ccccc-CCCCCCEEEcccCcCcc--ccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCC
Q 045304 11 NLELLVLSHNKLVGVI-PTKVF-NVSTLKVFEVSNNSLSG--SLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLS 86 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~-~~~~~-~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 86 (540)
-++.|.+-++.+-..- -..|+ .++.++.|||.+|.+++ +|.. +..++|.|++|+|+.|.+...+...-....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 3445555566553211 12233 47899999999999873 2222 347899999999999998865544335667999
Q ss_pred EEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCc
Q 045304 87 LLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE 165 (540)
Q Consensus 87 ~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~ 165 (540)
+|.|.+..+.-. ....+..++.+++|.++.|.+.....+..-.+. --+.++++....|....-.....++...+++.
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~--~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED--WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc--cchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 999988877533 234566788899999888855432111100000 11345555555554321111122333346788
Q ss_pred EEEccCCcceecC-ChhccCCCCCCeeeccCCcccccc-CccccCCCCCCeeeeeCccccCcCCc------cccCCCCCC
Q 045304 166 YFYMPNCNVSGGI-PEEISNLTNLIIIYLGGNKLNGSI-PITLSKLQKLQGLSLADNKLEGSIPN------NICRLTELY 237 (540)
Q Consensus 166 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~ 237 (540)
.+.+..|.+...- -+....++.+--|.|+.+++...- -+.+.+++.|..|.++++.+...+.. .++.+++++
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~ 282 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQ 282 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceE
Confidence 8888877664322 234555677778888888876422 13577889999999999887644322 356788888
Q ss_pred eEEcC
Q 045304 238 ELDLG 242 (540)
Q Consensus 238 ~L~l~ 242 (540)
.|+=+
T Consensus 283 vLNGs 287 (418)
T KOG2982|consen 283 VLNGS 287 (418)
T ss_pred EecCc
Confidence 77543
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=8.6e-08 Score=75.86 Aligned_cols=130 Identities=20% Similarity=0.338 Sum_probs=73.1
Q ss_pred CcEEEccCCcceecCChh---ccCCCCCCeeeccCCccccccCcccc-CCCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304 164 LEYFYMPNCNVSGGIPEE---ISNLTNLIIIYLGGNKLNGSIPITLS-KLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 239 (540)
+..++|++|++- .+++. +.....|+.++|++|.+. .+|..|. ..+.++.|++++|.++ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344455555442 22332 333455666677777776 3444443 4456777777777776 466667777777777
Q ss_pred EcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCC
Q 045304 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPL 297 (540)
Q Consensus 240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~ 297 (540)
+++.|.+. ..|..+..+.++-.|+..+|.+..+|.++..-...-...+.++.+.+.-
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~ 162 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDET 162 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccC
Confidence 77777765 3455555566667777777766666655333233333333444444333
No 55
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.04 E-value=6.1e-07 Score=79.55 Aligned_cols=161 Identities=19% Similarity=0.150 Sum_probs=72.6
Q ss_pred ccCCCCCCeeeeeCccccCcCCcc----ccCCCCCCeEEcCCCCCccccCc-------------cCCCCCCCCEeeCCCC
Q 045304 206 LSKLQKLQGLSLADNKLEGSIPNN----ICRLTELYELDLGSNKFSRSIPA-------------CFSNLASLRTLSLGSN 268 (540)
Q Consensus 206 l~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n 268 (540)
+..||.|+.++|++|.|....|.. +++-+.|.+|.|++|.+...-.. -...-|.|+++....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 344555555555555554433332 33445555555555544211100 0122355666666666
Q ss_pred CCCCCCcc-----ccCCCCCcEEECCCCcccCC-----CccccccccCcceEEcccceeeec----CccccccCCCCcEE
Q 045304 269 ELTSIPLT-----FWNLKDILYLNFSSNFLTGP-----LPLEIENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYL 334 (540)
Q Consensus 269 ~l~~ip~~-----~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L 334 (540)
++...|.. +..-..|+.+.+..|.|.-. +-..+..+.+|+.|||..|-++-. +...++.++.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 66554331 11113555566655555411 001123345566666666655422 12233444555666
Q ss_pred eCcCccCcccCCcc----c--CCCCCCCEEECCCCcCc
Q 045304 335 FVGYNRLQGSIPYS----I--GDLISLKSLNLSNNNLS 366 (540)
Q Consensus 335 ~l~~n~l~~~~~~~----~--~~l~~L~~L~l~~n~l~ 366 (540)
.+..|-++..-..+ | ...++|+.|...+|.+.
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 66665554221111 1 12345555555555544
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.6e-06 Score=53.01 Aligned_cols=36 Identities=39% Similarity=0.599 Sum_probs=20.1
Q ss_pred CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCc
Q 045304 11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLS 47 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 47 (540)
+|++|++++|+++ .+|..+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5566666666666 34445566666666666666555
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=3.2e-05 Score=74.85 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=31.1
Q ss_pred ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCC
Q 045304 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSN 244 (540)
Q Consensus 182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n 244 (540)
+..+.+++.|++++|.++ .+|. + ..+|+.|.+.+|.-...+|..+. ++|++|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 344566777777777655 3341 1 23567777765433234444332 45666666665
No 58
>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.94 E-value=1.5e-05 Score=75.84 Aligned_cols=29 Identities=45% Similarity=0.916 Sum_probs=26.2
Q ss_pred cCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 497 NNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
.+.||+|+||.||||.+. |..||||.+..
T Consensus 216 ~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~s 244 (513)
T KOG2052|consen 216 QEIIGKGRFGEVWRGRWR-GEDVAVKIFSS 244 (513)
T ss_pred EEEecCccccceeecccc-CCceEEEEecc
Confidence 567999999999999996 88999999954
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.87 E-value=5.3e-05 Score=73.38 Aligned_cols=17 Identities=12% Similarity=0.163 Sum_probs=9.3
Q ss_pred CCCCCCEEECcCccccC
Q 045304 105 NLRNLNKVTLYNNYLTS 121 (540)
Q Consensus 105 ~l~~L~~L~l~~n~~~~ 121 (540)
.+.+++.|++++|.++.
T Consensus 50 ~~~~l~~L~Is~c~L~s 66 (426)
T PRK15386 50 EARASGRLYIKDCDIES 66 (426)
T ss_pred HhcCCCEEEeCCCCCcc
Confidence 34556666666554444
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=4.6e-06 Score=87.50 Aligned_cols=138 Identities=20% Similarity=0.273 Sum_probs=70.6
Q ss_pred CCCCEEEcccCcC-ccccchhhhcCCCCCCEEEccCCcccc-cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304 34 STLKVFEVSNNSL-SGSLSSIAGVRLPNLEVLRMRSNNFCG-TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111 (540)
Q Consensus 34 ~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 111 (540)
.+|+.||+++... ....|..++..+|+|+.|.+++-.+.. .......++++|..||+++++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4566666665432 223444555566666666666544431 1122234556666666666666533 44556666666
Q ss_pred EECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccC--Cc---cccccccccCcEEEccCCcceecC
Q 045304 112 VTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGIL--PG---TSVGNLSHSLEYFYMPNCNVSGGI 178 (540)
Q Consensus 112 L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~---~~~~~l~~~L~~L~l~~~~~~~~~ 178 (540)
|.+.+=.+.... ....+.++++|++||+|........ .. ..-..+ ++|+.||.+++.+.+.+
T Consensus 200 L~mrnLe~e~~~----~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L-peLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQ----DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL-PELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchh----hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC-ccccEEecCCcchhHHH
Confidence 666555444321 2234556666666666665433221 00 011112 56667776666555443
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.81 E-value=1.6e-05 Score=50.94 Aligned_cols=34 Identities=35% Similarity=0.543 Sum_probs=13.5
Q ss_pred CCEeeCCCCCCCCCCccccCCCCCcEEECCCCcc
Q 045304 260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL 293 (540)
Q Consensus 260 L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l 293 (540)
|++|++++|+++.+|..+.++++|+.|++++|++
T Consensus 3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 4444444444444443344444444444444443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.80 E-value=4.4e-05 Score=65.09 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=39.6
Q ss_pred CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccC-CccccCCCCCCEEE
Q 045304 35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI-PDTFGNLRNLNKVT 113 (540)
Q Consensus 35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~ 113 (540)
+...+||++|.+. .++.. ..+++|.+|.|++|.++.+-|.--.-+++|+.|.|.+|++.... -+-+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l~~l--p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDNL--PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hcccC--CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4445555555543 22222 24555555555555555444433333445555555555543211 12234455555555
Q ss_pred CcCccccC
Q 045304 114 LYNNYLTS 121 (540)
Q Consensus 114 l~~n~~~~ 121 (540)
+-+|..+.
T Consensus 120 ll~Npv~~ 127 (233)
T KOG1644|consen 120 LLGNPVEH 127 (233)
T ss_pred ecCCchhc
Confidence 55554443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.79 E-value=8.3e-05 Score=61.27 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=58.1
Q ss_pred ccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304 5 EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK 84 (540)
Q Consensus 5 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 84 (540)
+|.++++|+.+.+.. .+...-..+|.++++|+.+.+..+ +. .++...|..+++|+.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 477777888888774 455555567777777888887764 54 67777777777788888865 343344455666777
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEECcC
Q 045304 85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN 116 (540)
Q Consensus 85 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 116 (540)
|+.+++..+ +.......|.++ +|+.+.+..
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 777777654 444445566666 777777654
No 64
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=97.77 E-value=1.2e-05 Score=79.39 Aligned_cols=50 Identities=30% Similarity=0.533 Sum_probs=38.8
Q ss_pred cccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
.++++|+..+ ..||+|+||+||||.+.+ .||||.|..... +..++|..||
T Consensus 388 eIp~~ev~l~-------~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEV 439 (678)
T KOG0193|consen 388 EIPPEEVLLG-------ERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEV 439 (678)
T ss_pred ccCHHHhhcc-------ceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHH
Confidence 3566776655 569999999999999973 699999975542 2457799997
No 65
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=5.6e-05 Score=64.49 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=44.6
Q ss_pred CCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEEC
Q 045304 211 KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNF 288 (540)
Q Consensus 211 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L 288 (540)
+...++|++|.+... +.|..++.|.+|.+.+|.|+...|.--.-+++|..|.+.+|++..+.+ .+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 455566666665421 235566666666666666665555443445566666666666555322 2334455555555
Q ss_pred CCCccc
Q 045304 289 SSNFLT 294 (540)
Q Consensus 289 ~~n~l~ 294 (540)
-+|.+.
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 555443
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.68 E-value=6.8e-07 Score=84.11 Aligned_cols=279 Identities=16% Similarity=0.107 Sum_probs=120.4
Q ss_pred CCCEEeccCcccccCCC--ccccCCCCCCEEEcccCc-CccccchhhhcCCCCCCEEEccCC-cccccCCcc-ccCCCCC
Q 045304 11 NLELLVLSHNKLVGVIP--TKVFNVSTLKVFEVSNNS-LSGSLSSIAGVRLPNLEVLRMRSN-NFCGTIPHF-IFNASKL 85 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~L 85 (540)
.|+.|++.++.=.+.-+ ..-.++++++.|++.++. +++..--.+...+++|+.|++..| .++...-.. -..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666666664332211 222456666666666654 221111223345667777777664 333222221 2356667
Q ss_pred CEEEccCCcc-ccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304 86 SLLELGDNSF-SGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS 163 (540)
Q Consensus 86 ~~L~L~~n~~-~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~ 163 (540)
++++++.+.- ++. +...+.++..++.+.+.+|.-.+... +...-..+..+..+++..+..........+......
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~---l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA---LLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH---HHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 7777766542 221 11223345555555554432111100 111112233333444333322111111222222245
Q ss_pred CcEEEccCCcceecCC-hh-ccCCCCCCeeeccCCcc-ccccCccc-cCCCCCCeeeeeCcccc--CcCCccccCCCCCC
Q 045304 164 LEYFYMPNCNVSGGIP-EE-ISNLTNLIIIYLGGNKL-NGSIPITL-SKLQKLQGLSLADNKLE--GSIPNNICRLTELY 237 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~-~~-l~~l~~L~~L~l~~n~l-~~~~~~~l-~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~ 237 (540)
|+.|..+++...+..+ .. -.+..+|+.+-+.+++. +..--..+ .+++.|+.+++..+... +.+...-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 5555555554322111 11 13345566666655542 11111111 24456666666555321 11222233556666
Q ss_pred eEEcCCCCCcccc-----CccCCCCCCCCEeeCCCCCCCC--CCccccCCCCCcEEECCCCc
Q 045304 238 ELDLGSNKFSRSI-----PACFSNLASLRTLSLGSNELTS--IPLTFWNLKDILYLNFSSNF 292 (540)
Q Consensus 238 ~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~--ip~~~~~l~~L~~L~L~~n~ 292 (540)
.+.++.+...... ...-..+..|..+.++++.... .-+.+..+++|+.+++-+++
T Consensus 376 ~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 376 VLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 6666655322110 1111234456666666665443 33345556666666666554
No 67
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.65 E-value=1.1e-05 Score=84.65 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=70.9
Q ss_pred CCCCCEEEccCCccc-ccCCcccc-CCCCCCEEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCC
Q 045304 58 LPNLEVLRMRSNNFC-GTIPHFIF-NASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSN 134 (540)
Q Consensus 58 l~~L~~L~L~~n~l~-~~~~~~l~-~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 134 (540)
-.+|+.|++++...- ..-|..++ -+++|++|.+.+-.+... ......++++|..||+++++++.. ..++.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-------~GIS~ 193 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-------SGISR 193 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-------HHHhc
Confidence 367999999886432 22222333 468999999988766432 223456789999999999988864 45788
Q ss_pred CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCc
Q 045304 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN 173 (540)
Q Consensus 135 l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~ 173 (540)
+++|+.|.+.+-.+........+.++ .+|+.||++...
T Consensus 194 LknLq~L~mrnLe~e~~~~l~~LF~L-~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 194 LKNLQVLSMRNLEFESYQDLIDLFNL-KKLRVLDISRDK 231 (699)
T ss_pred cccHHHHhccCCCCCchhhHHHHhcc-cCCCeeeccccc
Confidence 88888888877666543221234444 566666666544
No 68
>PLN03224 probable serine/threonine protein kinase; Provisional
Probab=97.59 E-value=4.9e-05 Score=77.22 Aligned_cols=47 Identities=23% Similarity=0.423 Sum_probs=35.5
Q ss_pred HhccCCccCeeccCCCCcEEEEEe-----------------cCCCEEEEEEeccccCCcchhhh
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARI-----------------QDGMEVAVKVFHLHCSGAFKSFD 536 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l-----------------~~g~~vAVK~l~~~~~~~~~~F~ 536 (540)
..++|...++||+|+||+||||.+ .+++.||||++.....+..++|.
T Consensus 143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl 206 (507)
T PLN03224 143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFL 206 (507)
T ss_pred cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHH
Confidence 467899999999999999999975 34578999999654333334444
No 69
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=97.54 E-value=0.00014 Score=74.74 Aligned_cols=44 Identities=32% Similarity=0.511 Sum_probs=34.0
Q ss_pred ccCeeccCCCCcEEEEEe-cCC----CEEEEEEecccc-CCcchhhhhhc
Q 045304 496 ENNLIGRGGFGSVYKARI-QDG----MEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l-~~g----~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
...+||+|.||+||||.+ +.| .+||+|++.... .+...||..|+
T Consensus 700 k~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeA 749 (1177)
T KOG1025|consen 700 KDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEA 749 (1177)
T ss_pred hhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHH
Confidence 457899999999999987 555 578999996544 34467788774
No 70
>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=2.9e-05 Score=80.05 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=35.2
Q ss_pred CeeccCCCCcEEEEEecC------CCEEEEEEeccccCC-cchhhhhhcC
Q 045304 498 NLIGRGGFGSVYKARIQD------GMEVAVKVFHLHCSG-AFKSFDVECN 540 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~~~-~~~~F~~E~~ 540 (540)
..||+|.||+||+|+..+ .+.||||.|++.... ..++|.+|++
T Consensus 492 ~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REae 541 (774)
T KOG1026|consen 492 EELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAE 541 (774)
T ss_pred hhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHH
Confidence 449999999999999733 478999999876644 6788999974
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.39 E-value=0.00057 Score=56.23 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=11.8
Q ss_pred ccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCC
Q 045304 230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGS 267 (540)
Q Consensus 230 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 267 (540)
|..+++|+.+.+.. .+...-...|..+++|+.+++..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 33344444444432 23323333344444444444443
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.28 E-value=7.1e-06 Score=77.44 Aligned_cols=298 Identities=16% Similarity=0.098 Sum_probs=173.3
Q ss_pred CCCCEEEcccCcCccccch-hhhcCCCCCCEEEccCCc-ccccCCccc-cCCCCCCEEEccCCc-ccccCCc-cccCCCC
Q 045304 34 STLKVFEVSNNSLSGSLSS-IAGVRLPNLEVLRMRSNN-FCGTIPHFI-FNASKLSLLELGDNS-FSGFIPD-TFGNLRN 108 (540)
Q Consensus 34 ~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~-~~~~~~~-~~~~l~~ 108 (540)
..|+.|.+.++.-.+.-+- .+...+|+++.|++.+|. ++...-..+ ..+++|++|++..|. ++...-. --..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 4688888888764322221 222578999999999885 332222223 367899999998853 4433322 2346899
Q ss_pred CCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCC--hhccCCC
Q 045304 109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP--EEISNLT 186 (540)
Q Consensus 109 L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~~l~~l~ 186 (540)
|++++++.+....... +-....++..++.+.+.+|.-.+.-...........+..+++..|....... ..-..+.
T Consensus 218 L~~lNlSwc~qi~~~g---v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNG---VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred HHHhhhccCchhhcCc---chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 9999999875433211 2334566777888877765322210001111111335566666664322211 1123467
Q ss_pred CCCeeeccCCccccc-cCccc-cCCCCCCeeeeeCcc-ccCcCCccc-cCCCCCCeEEcCCCCCc--cccCccCCCCCCC
Q 045304 187 NLIIIYLGGNKLNGS-IPITL-SKLQKLQGLSLADNK-LEGSIPNNI-CRLTELYELDLGSNKFS--RSIPACFSNLASL 260 (540)
Q Consensus 187 ~L~~L~l~~n~l~~~-~~~~l-~~l~~L~~L~l~~n~-~~~~~p~~~-~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L 260 (540)
.|+.|+.+++...+. .-..+ .++.+|+.+-++.++ |+..--..+ .+.+.|+.+++..+... +.+-..-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 788998887654221 11222 467899999998885 332211122 35678999999887542 2233333568899
Q ss_pred CEeeCCCCCC-CC-----CCccccCCCCCcEEECCCCccc-CCCccccccccCcceEEcccceeeec--CccccccCCCC
Q 045304 261 RTLSLGSNEL-TS-----IPLTFWNLKDILYLNFSSNFLT-GPLPLEIENLKVLVGIDFSVNNFSGV--IPTTIGSLKGL 331 (540)
Q Consensus 261 ~~L~l~~n~l-~~-----ip~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L 331 (540)
+.+.++.|.. ++ +...-..+..|..+.|+++... ...-..+..+++|+.+++-+++-... +...-..++++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 9999998743 22 1233455678889999998754 23334566778899988877643211 22222345555
Q ss_pred cEE
Q 045304 332 QYL 334 (540)
Q Consensus 332 ~~L 334 (540)
+..
T Consensus 455 ~v~ 457 (483)
T KOG4341|consen 455 KVH 457 (483)
T ss_pred eeh
Confidence 544
No 73
>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]
Probab=97.23 E-value=0.0003 Score=65.63 Aligned_cols=36 Identities=36% Similarity=0.600 Sum_probs=30.0
Q ss_pred CCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC
Q 045304 494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS 529 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~ 529 (540)
+...+++|+|+||.||+|++. .++.|||||.+.+..
T Consensus 26 ~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r 62 (364)
T KOG0658|consen 26 YEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR 62 (364)
T ss_pred EEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC
Confidence 445689999999999999994 468999999976553
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.00013 Score=65.08 Aligned_cols=93 Identities=24% Similarity=0.393 Sum_probs=48.8
Q ss_pred CCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCC--cccccCCccccCCCCCCEEEccCCccccc-CCcc
Q 045304 26 IPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSN--NFCGTIPHFIFNASKLSLLELGDNSFSGF-IPDT 102 (540)
Q Consensus 26 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~ 102 (540)
+....-.+..|+.|.+.+..++ ++.... .+++|+.|.++.| ++++.++.....+++|++++++.|++... --..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~~~P--~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLTNFP--KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhcccee-ecccCC--CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 3333344455555555555554 333222 4666777777766 44444444444556666666666665421 0112
Q ss_pred ccCCCCCCEEECcCccccC
Q 045304 103 FGNLRNLNKVTLYNNYLTS 121 (540)
Q Consensus 103 ~~~l~~L~~L~l~~n~~~~ 121 (540)
+..+.+|..|++.+|..+.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 3445556666666655444
No 75
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.15 E-value=0.00021 Score=63.76 Aligned_cols=106 Identities=26% Similarity=0.310 Sum_probs=73.8
Q ss_pred CCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccC--cCccccchhhhcCCCCCCEEEccCCccccc-CCccccCCC
Q 045304 7 GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNN--SLSGSLSSIAGVRLPNLEVLRMRSNNFCGT-IPHFIFNAS 83 (540)
Q Consensus 7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~ 83 (540)
-.+.+|+.|++.+..++.. ..|-.+++|+.|+++.| ...+.++..+ ..+|+|++|+++.|++.-. --..+..+.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhc
Confidence 3456778888887777633 35667899999999999 6666677666 5679999999999987721 112245677
Q ss_pred CCCEEEccCCcccccCC---ccccCCCCCCEEECc
Q 045304 84 KLSLLELGDNSFSGFIP---DTFGNLRNLNKVTLY 115 (540)
Q Consensus 84 ~L~~L~L~~n~~~~~~~---~~~~~l~~L~~L~l~ 115 (540)
+|..|++.+|..+..-- ..|.-+++|++|+-.
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 88899999887654211 234556667666543
No 76
>PRK09188 serine/threonine protein kinase; Provisional
Probab=96.99 E-value=0.00053 Score=66.71 Aligned_cols=51 Identities=22% Similarity=0.167 Sum_probs=36.8
Q ss_pred HHhccCCccCeeccCCCCcEEEEEec--CCCEEEEEEeccccC-----Ccchhhhhhc
Q 045304 489 RATDRFSENNLIGRGGFGSVYKARIQ--DGMEVAVKVFHLHCS-----GAFKSFDVEC 539 (540)
Q Consensus 489 ~at~~f~~~~~ig~G~~G~Vykg~l~--~g~~vAVK~l~~~~~-----~~~~~F~~E~ 539 (540)
..-++|.....||+|+||+||+|... +|+.||||++..... ...+.|.+|+
T Consensus 15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~ 72 (365)
T PRK09188 15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREI 72 (365)
T ss_pred cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHH
Confidence 34456778899999999999999874 578899999753211 1234477775
No 77
>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]
Probab=96.93 E-value=0.00062 Score=66.19 Aligned_cols=41 Identities=37% Similarity=0.609 Sum_probs=32.2
Q ss_pred CeeccCCCCcEEEEEecCCCE-EEEEEeccccCCc--chhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQDGME-VAVKVFHLHCSGA--FKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~g~~-vAVK~l~~~~~~~--~~~F~~E~ 539 (540)
+.||+|+||+||+|.+. |+. ||||++....... .++|..|+
T Consensus 47 ~~iG~G~~g~V~~~~~~-g~~~vavK~~~~~~~~~~~~~~f~~E~ 90 (362)
T KOG0192|consen 47 EVLGSGSFGTVYKGKWR-GTDVVAVKIISDPDFDDESRKAFRREA 90 (362)
T ss_pred hhcccCCceeEEEEEeC-CceeEEEEEecchhcChHHHHHHHHHH
Confidence 44999999999999996 666 9999997654322 45788886
No 78
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=3.6e-05 Score=68.85 Aligned_cols=99 Identities=23% Similarity=0.222 Sum_probs=59.7
Q ss_pred CCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEE
Q 045304 209 LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYL 286 (540)
Q Consensus 209 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L 286 (540)
+.+.+.|++.+|.+++. .....++.|+.|.|+-|+|+..-| |..|++|+.|.|..|.|.++.+ -+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 44556666666666532 223456677777777777664332 5666777777777777766544 34567777777
Q ss_pred ECCCCcccCCCccc-----cccccCcceEE
Q 045304 287 NFSSNFLTGPLPLE-----IENLKVLVGID 311 (540)
Q Consensus 287 ~L~~n~l~~~~~~~-----~~~l~~L~~L~ 311 (540)
.|..|.-.|.-+.. +..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777766554432 34455555543
No 79
>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.0011 Score=58.28 Aligned_cols=50 Identities=30% Similarity=0.402 Sum_probs=38.2
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhcC
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVECN 540 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~~ 540 (540)
.++|.-+..+|+|.||.||.|... ++-.||+|++.... .+-.+++.+|||
T Consensus 21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiE 74 (281)
T KOG0580|consen 21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIE 74 (281)
T ss_pred hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeE
Confidence 456888899999999999999985 46789999995433 223456777775
No 80
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=96.56 E-value=0.0031 Score=65.80 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=32.1
Q ss_pred HhccCCccCeeccCCCCcEEEEEecC-----CCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQD-----GMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~~-----g~~vAVK~l~~ 526 (540)
..++|...+.||+|+||.||+|+..+ |..||||++..
T Consensus 130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~ 171 (566)
T PLN03225 130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATE 171 (566)
T ss_pred ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecc
Confidence 56788889999999999999999854 68999999853
No 81
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=6.4e-05 Score=67.30 Aligned_cols=106 Identities=20% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccC-CccccCCCCCC
Q 045304 32 NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI-PDTFGNLRNLN 110 (540)
Q Consensus 32 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~ 110 (540)
++.+.+.|++-++.++ .|. +..+|+.|++|.|+-|+++..- .+..|++|++|+|..|.|.... ..-+.++++|+
T Consensus 17 dl~~vkKLNcwg~~L~-DIs--ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-DIS--ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCcc-HHH--HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 3455666666666665 232 2246777777777777776332 3566777777777777665321 12345667777
Q ss_pred EEECcCccccCCCCCccccccCCCCCCCCEEE
Q 045304 111 KVTLYNNYLTSSTSDLNFLSSLSNCKTLTYID 142 (540)
Q Consensus 111 ~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~ 142 (540)
.|.|..|.-.+....---...+..+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77776665443211100112244455566554
No 82
>PHA02988 hypothetical protein; Provisional
Probab=96.45 E-value=0.0032 Score=59.81 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=39.2
Q ss_pred cccccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCc---chhhhhhc
Q 045304 479 WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGA---FKSFDVEC 539 (540)
Q Consensus 479 ~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~---~~~F~~E~ 539 (540)
.+.++.+++. +.....||+|++|.||+|.+ +|+.||||++....... .+.|.+|+
T Consensus 12 ~~~i~~~~i~-----~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~ 69 (283)
T PHA02988 12 IKCIESDDID-----KYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEI 69 (283)
T ss_pred ceecCHHHcC-----CCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHH
Confidence 3455666663 33447899999999999999 68999999996543222 24566775
No 83
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=96.39 E-value=0.0021 Score=63.89 Aligned_cols=47 Identities=30% Similarity=0.393 Sum_probs=33.0
Q ss_pred cCCccCeeccCCCCcEEEEEe------cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
+|.-.+.||+|+||.||+|+. ..+..||||++.... ....+.|..|+
T Consensus 36 ~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei 89 (375)
T cd05104 36 RLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSEL 89 (375)
T ss_pred HeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHH
Confidence 355568899999999999974 235689999996433 22234566665
No 84
>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]
Probab=96.35 E-value=0.0016 Score=58.33 Aligned_cols=52 Identities=29% Similarity=0.282 Sum_probs=37.5
Q ss_pred cccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
.|+-++|+.. ..||.|.||+|+|-.. +.|+..||||++.... ...++|..|.
T Consensus 60 ~F~~~~Lqdl-------g~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~ 113 (361)
T KOG1006|consen 60 TFTSDNLQDL-------GEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEH 113 (361)
T ss_pred ccccchHHHH-------HHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHH
Confidence 4555556554 3499999999999887 6799999999976553 3345566654
No 85
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=96.24 E-value=0.003 Score=61.99 Aligned_cols=43 Identities=30% Similarity=0.510 Sum_probs=33.0
Q ss_pred cCeeccCCCCcEEEEEe-cCCCEEEEEEecccc--CCcchhhhhhc
Q 045304 497 NNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
++++|+|.||+||-|+- ..|+.||||++.... .++..+..+||
T Consensus 569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EV 614 (888)
T KOG4236|consen 569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEV 614 (888)
T ss_pred HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHH
Confidence 46899999999999987 469999999996544 23344566665
No 86
>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom
Probab=96.23 E-value=0.0053 Score=54.78 Aligned_cols=33 Identities=42% Similarity=0.390 Sum_probs=28.8
Q ss_pred CCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 494 FSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
+.-.+.||+|+||.||+|..++|+.||||+...
T Consensus 17 ~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~ 49 (198)
T cd05144 17 ESLGNQIGVGKESDVYLALDPDGNPVALKFHRL 49 (198)
T ss_pred hhcCCccccCcceEEEEEEcCCCCEEEEEEEec
Confidence 444678999999999999998899999998754
No 87
>PTZ00284 protein kinase; Provisional
Probab=96.22 E-value=0.0021 Score=65.94 Aligned_cols=42 Identities=31% Similarity=0.380 Sum_probs=34.5
Q ss_pred HHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 485 LELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
+++...+++|...+.||+|+||+||+|+.. .++.||||++..
T Consensus 122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~ 164 (467)
T PTZ00284 122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRN 164 (467)
T ss_pred CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEec
Confidence 344556778888899999999999999874 578999999954
No 88
>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=96.17 E-value=0.0046 Score=59.37 Aligned_cols=35 Identities=43% Similarity=0.674 Sum_probs=28.3
Q ss_pred CCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304 494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC 528 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~ 528 (540)
|+....||+|.||.||||.-. .++.||+|.+..+.
T Consensus 15 ~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~ 50 (467)
T KOG0201|consen 15 YTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEE 50 (467)
T ss_pred cccchhccccccceeeeeeeccccceEEEEEechhh
Confidence 445577999999999999873 47899999996544
No 89
>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]
Probab=96.08 E-value=0.0049 Score=62.69 Aligned_cols=51 Identities=25% Similarity=0.348 Sum_probs=38.7
Q ss_pred ccHHHHHHHhccCCccCeeccCCCCcEEEEEe--cCCC--EEEEEEeccccCC-cchhhhhhc
Q 045304 482 FSYLELCRATDRFSENNLIGRGGFGSVYKARI--QDGM--EVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l--~~g~--~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+..++|+.. ++||+|.||+|++|.+ ++|. .||||.|..+... ...+|..|+
T Consensus 107 Ipee~i~l~-------e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEa 162 (1039)
T KOG0199|consen 107 IPEEQIKLY-------ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREA 162 (1039)
T ss_pred ccHHHHHHH-------HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHH
Confidence 455666655 5699999999999998 4564 5899999876643 456798886
No 90
>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=96.07 E-value=0.0031 Score=62.75 Aligned_cols=42 Identities=33% Similarity=0.544 Sum_probs=31.5
Q ss_pred CeeccCCCCcEEEEEecC--C---CEEEEEEecccc---CCcchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQD--G---MEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~--g---~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
..||+|.||.||+|++.. + ..||||...... ....++|+.|.
T Consensus 163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EA 212 (474)
T KOG0194|consen 163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEA 212 (474)
T ss_pred ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHH
Confidence 679999999999999843 2 238999997422 33457788885
No 91
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=96.04 E-value=0.0047 Score=61.77 Aligned_cols=47 Identities=23% Similarity=0.339 Sum_probs=32.6
Q ss_pred cCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
.|.-.++||+|+||.||+|+.. .+..||||++..... ...+.|..|+
T Consensus 38 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei 91 (400)
T cd05105 38 GLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSEL 91 (400)
T ss_pred ceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHH
Confidence 3444578999999999999862 134699999965432 2234577775
No 92
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=96.01 E-value=0.0045 Score=60.73 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=38.2
Q ss_pred ccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 482 FSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
....++..++++|.....||+|+||.||+|.. .+|+.||||++..
T Consensus 7 ~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~ 52 (345)
T cd07877 7 ELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR 52 (345)
T ss_pred hHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecC
Confidence 34466777889999999999999999999985 5689999999964
No 93
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=95.97 E-value=0.0044 Score=61.06 Aligned_cols=43 Identities=30% Similarity=0.278 Sum_probs=31.7
Q ss_pred cCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC-cchhhhhhc
Q 045304 497 NNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
.+.||+|+||.||+|+.. +|+.||||++...... ..+.|..|+
T Consensus 79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 123 (353)
T PLN00034 79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREI 123 (353)
T ss_pred hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHH
Confidence 367999999999999874 6899999999643322 234566665
No 94
>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin. Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre
Probab=95.94 E-value=0.0036 Score=59.75 Aligned_cols=45 Identities=33% Similarity=0.517 Sum_probs=39.0
Q ss_pred ccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 482 FSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
++++++..++++|.-...||+|+||.||+|.. .+|+.+|||++..
T Consensus 12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~ 57 (291)
T cd06639 12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDP 57 (291)
T ss_pred hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 55677778899999999999999999999988 4688999999854
No 95
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=95.93 E-value=0.0046 Score=61.37 Aligned_cols=47 Identities=23% Similarity=0.353 Sum_probs=32.7
Q ss_pred cCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+|.-.+.||+|+||.||+|+. .++..||||++...... ....|..|+
T Consensus 39 ~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 92 (374)
T cd05106 39 NLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSEL 92 (374)
T ss_pred HceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHH
Confidence 455668899999999999874 23468999999654322 233466665
No 96
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.92 E-value=0.00072 Score=69.76 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=16.6
Q ss_pred CCCCCEEECcCCC-CCccCCccccccccccCcEEEccCCcc
Q 045304 135 CKTLTYIDLSDNP-LDGILPGTSVGNLSHSLEYFYMPNCNV 174 (540)
Q Consensus 135 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~~L~~L~l~~~~~ 174 (540)
+++|+.|.+.++. ++..-- ..+....+.|++|+++.|..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl-~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGL-VSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCCcceEccCCCCccchhHH-HHHHHhcCcccEEeeecCcc
Confidence 5555555554444 222111 12222224466666655543
No 97
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0033 Score=33.30 Aligned_cols=20 Identities=50% Similarity=0.590 Sum_probs=10.8
Q ss_pred CCCEEeccCcccccCCCcccc
Q 045304 11 NLELLVLSHNKLVGVIPTKVF 31 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~ 31 (540)
+|++|+|++|+++ .+|..|+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 3556666666555 4444444
No 98
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.90 E-value=0.00049 Score=70.97 Aligned_cols=113 Identities=24% Similarity=0.238 Sum_probs=57.8
Q ss_pred CCCCCEEEcccCcCccccc-hhhhcCCCCCCEEEccCC-cccccCC----ccccCCCCCCEEEccCCc-ccccCCcccc-
Q 045304 33 VSTLKVFEVSNNSLSGSLS-SIAGVRLPNLEVLRMRSN-NFCGTIP----HFIFNASKLSLLELGDNS-FSGFIPDTFG- 104 (540)
Q Consensus 33 l~~L~~L~l~~n~l~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~----~~l~~l~~L~~L~L~~n~-~~~~~~~~~~- 104 (540)
++.|+.|.+.++.-..... ..+...+++|+.|+++++ ......+ .....+.+|+.|+++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666653221211 122246677777777652 2111111 223345667777777666 4433222222
Q ss_pred CCCCCCEEECcCcc-ccCCCCCccccccCCCCCCCCEEECcCCCCC
Q 045304 105 NLRNLNKVTLYNNY-LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLD 149 (540)
Q Consensus 105 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~ 149 (540)
.+++|++|.+.++. ++... +......+++|+.|+++++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~g----l~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEG----LVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhH----HHHHHHhcCcccEEeeecCccc
Confidence 26677777766554 33221 3334455677777777766543
No 99
>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=95.88 E-value=0.0051 Score=66.50 Aligned_cols=43 Identities=33% Similarity=0.583 Sum_probs=33.3
Q ss_pred cCeeccCCCCcEEEEEecC--C----CEEEEEEecccc-CCcchhhhhhc
Q 045304 497 NNLIGRGGFGSVYKARIQD--G----MEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~~--g----~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
...||+|.||.||+|++.+ | ..||||.+.... .+...+|..|.
T Consensus 697 ~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea 746 (1025)
T KOG1095|consen 697 LRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEA 746 (1025)
T ss_pred eeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHH
Confidence 4679999999999999954 3 349999997665 34456798874
No 100
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=95.86 E-value=0.0053 Score=61.39 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=32.4
Q ss_pred CCccCeeccCCCCcEEEEEecC------CCEEEEEEeccccCC-cchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+.-...||+|+||.||+|+..+ +..||||++...... ..+.|..|+
T Consensus 39 ~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~ 91 (401)
T cd05107 39 LVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSEL 91 (401)
T ss_pred eehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHH
Confidence 3444779999999999999742 357999999754322 234566665
No 101
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=95.83 E-value=0.0045 Score=58.82 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=42.9
Q ss_pred cccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.+.++.+..++++|.-...||+|+||.||+|+. .+|+.+|||++..... ...++.+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~-~~~~~~~e~ 65 (286)
T cd06638 7 TIIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHD-IDEEIEAEY 65 (286)
T ss_pred eEEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccc-hHHHHHHHH
Confidence 355667777888898889999999999999987 4578999999854221 223455553
No 102
>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.78 E-value=0.0051 Score=60.13 Aligned_cols=35 Identities=40% Similarity=0.683 Sum_probs=28.1
Q ss_pred CCccCeeccCCCCcEEEEE-ecCCCEEEEEEecccc
Q 045304 494 FSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHC 528 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~ 528 (540)
|.....||+|.||.||||. +..|..||.||+.-+.
T Consensus 119 feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~ 154 (560)
T KOG0600|consen 119 FEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDN 154 (560)
T ss_pred HHHHHHhcCcchhheeEeeecccCcEEEEEEeeccc
Confidence 3334569999999999996 5779999999996544
No 103
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.77 E-value=0.0049 Score=63.56 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=35.8
Q ss_pred HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
..+.|.-.+.||+|+||+||+|+. .+|+.||||++..... +....+.+|+
T Consensus 30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei 82 (496)
T PTZ00283 30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEV 82 (496)
T ss_pred cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHH
Confidence 345666678899999999999975 5789999999964322 2223455554
No 104
>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]
Probab=95.71 E-value=0.0038 Score=57.81 Aligned_cols=35 Identities=31% Similarity=0.536 Sum_probs=28.5
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
++|-.-|.|++|.||.||||+= .++..||.||++-
T Consensus 76 ~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~km 111 (419)
T KOG0663|consen 76 EEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKM 111 (419)
T ss_pred HHHHHHhhcccCcceeEEEeccCCcceeEEeeeccc
Confidence 3445558899999999999986 4578999999964
No 105
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase. This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.
Probab=95.68 E-value=0.0096 Score=60.00 Aligned_cols=34 Identities=38% Similarity=0.545 Sum_probs=29.7
Q ss_pred cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
.|++ +-||+|++|.||+|++.+|+.||||+...+
T Consensus 119 ~fd~-~plasaSigQVh~A~l~~G~~VaVKv~rp~ 152 (437)
T TIGR01982 119 EFEE-KPLAAASIAQVHRARLVDGKEVAVKVLRPG 152 (437)
T ss_pred hCCC-cceeeeehhheEEEEecCCCEEEEEeeCCC
Confidence 4553 679999999999999999999999998655
No 106
>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []. These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.
Probab=95.68 E-value=0.0028 Score=50.97 Aligned_cols=36 Identities=36% Similarity=0.497 Sum_probs=30.4
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC 528 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~ 528 (540)
..|++ +-||+|+.|.||+|++.+|+.||||+..++-
T Consensus 12 ~~fd~-~PlasASiaQVh~a~l~~g~~VaVKV~rP~i 47 (119)
T PF03109_consen 12 DEFDP-EPLASASIAQVHRARLKDGEEVAVKVQRPGI 47 (119)
T ss_pred HHCCc-chhhheehhhheeeeecccchhhhhhcchHH
Confidence 34553 6799999999999999999999999987653
No 107
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=95.64 E-value=0.007 Score=60.29 Aligned_cols=44 Identities=30% Similarity=0.452 Sum_probs=37.5
Q ss_pred cCeeccCCCCcEEEEEecCCCEEEEEEeccccCC-cchhhhhhcC
Q 045304 497 NNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG-AFKSFDVECN 540 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~-~~~~F~~E~~ 540 (540)
.+.||+|-||.|-..+...+..||||.++.+... .+++|..||+
T Consensus 543 ~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIk 587 (807)
T KOG1094|consen 543 KEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIK 587 (807)
T ss_pred hhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHH
Confidence 4569999999999999987899999999877643 4689999984
No 108
>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=95.57 E-value=0.011 Score=56.52 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=35.3
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
..|...+.||+|+||.||+|+- .+|+.||||.+........+.|..|+
T Consensus 19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~ 67 (297)
T cd06656 19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEI 67 (297)
T ss_pred hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHH
Confidence 3456668899999999999985 57899999999654433334455554
No 109
>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]
Probab=95.57 E-value=0.0079 Score=59.19 Aligned_cols=41 Identities=27% Similarity=0.385 Sum_probs=33.9
Q ss_pred CeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.||+|-||.||.|.+.+...||||.+..+... .++|.+|+
T Consensus 212 ~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~-~~~f~~Ea 252 (468)
T KOG0197|consen 212 RELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMS-PEAFLREA 252 (468)
T ss_pred HHhcCCccceEEEEEEcCCCcccceEEeccccC-hhHHHHHH
Confidence 459999999999999976669999999877543 46788886
No 110
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=95.37 E-value=0.01 Score=57.73 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=34.3
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|... +|+.||||++.... ....+.|.+|+
T Consensus 18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~ 69 (329)
T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEK 69 (329)
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHH
Confidence 34556688999999999999985 58899999996432 12234455554
No 111
>PTZ00036 glycogen synthase kinase; Provisional
Probab=95.36 E-value=0.013 Score=59.43 Aligned_cols=36 Identities=33% Similarity=0.552 Sum_probs=30.0
Q ss_pred hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
+..|...++||+|+||.||+|+. ..|+.||||++..
T Consensus 65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~ 101 (440)
T PTZ00036 65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQ 101 (440)
T ss_pred CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEec
Confidence 34577778999999999999987 4578999999854
No 112
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=95.32 E-value=0.016 Score=56.84 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=30.3
Q ss_pred HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
..+.|.....||+|+||.||+|.- .+|..||||++..
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 50 (343)
T cd07878 13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSR 50 (343)
T ss_pred hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCc
Confidence 345566678899999999999986 4678999999964
No 113
>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea
Probab=95.30 E-value=0.013 Score=55.52 Aligned_cols=45 Identities=29% Similarity=0.516 Sum_probs=37.3
Q ss_pred ccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 482 FSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
.++.++..+.+.|.-...||+|+||.||+|.. .+|+.||+|+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~ 51 (282)
T cd06636 6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDV 51 (282)
T ss_pred hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEec
Confidence 45566667778888888999999999999998 4578999999854
No 114
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=95.23 E-value=0.014 Score=55.42 Aligned_cols=50 Identities=30% Similarity=0.368 Sum_probs=38.1
Q ss_pred HHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 489 RATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 489 ~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.++++|...+.||+|+||.||+|... ++..||+|++..... ..++|..|+
T Consensus 16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~ 66 (286)
T cd06614 16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEI 66 (286)
T ss_pred CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHH
Confidence 45566777788999999999999996 688999999965433 344566664
No 115
>smart00090 RIO RIO-like kinase.
Probab=95.20 E-value=0.021 Score=52.45 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=28.5
Q ss_pred CCccCeeccCCCCcEEEEE--ecCCCEEEEEEeccc
Q 045304 494 FSENNLIGRGGFGSVYKAR--IQDGMEVAVKVFHLH 527 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~--l~~g~~vAVK~l~~~ 527 (540)
|.-...||+|+||.||+|+ ..+|+.||||++...
T Consensus 30 ~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~ 65 (237)
T smart00090 30 SAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTG 65 (237)
T ss_pred HHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcC
Confidence 3345679999999999998 678999999998643
No 116
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=95.15 E-value=0.0091 Score=59.61 Aligned_cols=46 Identities=33% Similarity=0.472 Sum_probs=32.0
Q ss_pred CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCc---chhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGA---FKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~---~~~F~~E~ 539 (540)
|++-..||.|+||.||-|.= .+.++||||++.-..++. +++...||
T Consensus 28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEV 77 (948)
T KOG0577|consen 28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEV 77 (948)
T ss_pred HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHH
Confidence 44445599999999999864 456899999997544433 34444444
No 117
>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo
Probab=95.12 E-value=0.016 Score=55.23 Aligned_cols=42 Identities=31% Similarity=0.262 Sum_probs=31.6
Q ss_pred CeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
..||+|+||.||+|.. .+|..||||++..........|..|+
T Consensus 26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~ 68 (292)
T cd06657 26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEV 68 (292)
T ss_pred HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHH
Confidence 4599999999999988 56899999998654433344566664
No 118
>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=95.08 E-value=0.0036 Score=56.60 Aligned_cols=42 Identities=38% Similarity=0.533 Sum_probs=31.0
Q ss_pred CeeccCCCCcEEEEE-ecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 498 NLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
..||+|.||.|||+. +.+|..||.|+++-+... ..+.-.+||
T Consensus 25 ~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei 69 (375)
T KOG0591|consen 25 KKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEI 69 (375)
T ss_pred HHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHH
Confidence 569999999999995 689999999999744322 233445554
No 119
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=95.06 E-value=0.0056 Score=62.40 Aligned_cols=42 Identities=33% Similarity=0.541 Sum_probs=31.4
Q ss_pred CeeccCCCCcEEEEE-ecCCCEEEEEEecccc-CCcchhhhhhc
Q 045304 498 NLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
..+|+||||.||+|+ =..|..||||...... ......+..|+
T Consensus 19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~Ei 62 (732)
T KOG4250|consen 19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREI 62 (732)
T ss_pred hhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHH
Confidence 569999999999999 4679999999997543 33334455554
No 120
>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i
Probab=95.04 E-value=0.018 Score=55.18 Aligned_cols=42 Identities=33% Similarity=0.322 Sum_probs=31.8
Q ss_pred CeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
..||+|+||.||+|.. .+|+.||||++........+.|.+|+
T Consensus 27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~ 69 (297)
T cd06659 27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEV 69 (297)
T ss_pred hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHH
Confidence 4699999999999987 46899999999654433345566664
No 121
>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=95.01 E-value=0.019 Score=54.88 Aligned_cols=47 Identities=28% Similarity=0.371 Sum_probs=35.0
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+|.....||+|+||.||+|+- .+|+.||||++........+.|..|+
T Consensus 20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~ 67 (296)
T cd06655 20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEI 67 (296)
T ss_pred eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHH
Confidence 355667899999999999985 57899999999654433344566654
No 122
>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it
Probab=94.99 E-value=0.021 Score=54.62 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=29.2
Q ss_pred cCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLH 527 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~ 527 (540)
+|.-.+.||+|+||.||+|+..+ |+.||||++...
T Consensus 16 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~ 51 (296)
T cd06618 16 DLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRT 51 (296)
T ss_pred hheeeeEeeccCCeEEEEEEECCCCeEEEEEEEecc
Confidence 34455789999999999999965 899999999643
No 123
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=94.99 E-value=0.01 Score=58.81 Aligned_cols=37 Identities=30% Similarity=0.469 Sum_probs=30.9
Q ss_pred HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
..++|...+.||+|+||.||+|+.. +|+.||||++..
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~ 78 (370)
T cd05596 41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSK 78 (370)
T ss_pred CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH
Confidence 3456777789999999999999874 588999999953
No 124
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=94.98 E-value=0.018 Score=55.34 Aligned_cols=47 Identities=30% Similarity=0.397 Sum_probs=34.4
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC---Ccchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS---GAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~---~~~~~F~~E~ 539 (540)
.|...+.||+|+||.||+|+.. +|+.||+|++..... +..++|.+|+
T Consensus 16 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei 66 (307)
T cd06607 16 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEV 66 (307)
T ss_pred hhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHH
Confidence 3566688999999999999874 689999999854322 1234566665
No 125
>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=94.94 E-value=0.02 Score=57.41 Aligned_cols=33 Identities=39% Similarity=0.702 Sum_probs=28.9
Q ss_pred CCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
+.-.++||+|||..||+++- ..|..||||++..
T Consensus 20 Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk 53 (592)
T KOG0575|consen 20 YKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPK 53 (592)
T ss_pred eeeeeeeccCcceEEEEEEEcCCCcEEEEEEeeh
Confidence 44558899999999999987 8899999999965
No 126
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=94.92 E-value=0.023 Score=54.27 Aligned_cols=47 Identities=30% Similarity=0.385 Sum_probs=34.0
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||.||+|.- .+|..||+|++........+.|..|+
T Consensus 20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~ 67 (293)
T cd06647 20 KYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEI 67 (293)
T ss_pred hceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHH
Confidence 455557899999999999985 46789999998644333334566554
No 127
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.89 E-value=0.013 Score=31.04 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=4.4
Q ss_pred CEEEcccCcCc
Q 045304 37 KVFEVSNNSLS 47 (540)
Q Consensus 37 ~~L~l~~n~l~ 47 (540)
++|++++|.++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33444444333
No 128
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=94.86 E-value=0.025 Score=54.07 Aligned_cols=47 Identities=28% Similarity=0.386 Sum_probs=34.2
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.|.....||+|+||.||+|+- .+|+.||||++........+.|..|+
T Consensus 21 ~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~ 68 (296)
T cd06654 21 KYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEI 68 (296)
T ss_pred ceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHH
Confidence 344557799999999999985 56889999999654433344565554
No 129
>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]
Probab=94.84 E-value=0.0034 Score=57.06 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=31.9
Q ss_pred CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
|+--..+|+|+||.||||.. ..|++||||+.-.+. +.+|...||
T Consensus 35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s--DLQEIIKEI 79 (502)
T KOG0574|consen 35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT--DLQEIIKEI 79 (502)
T ss_pred HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc--hHHHHHHHH
Confidence 33345699999999999987 569999999985433 244555444
No 130
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=94.81 E-value=0.016 Score=57.38 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=31.2
Q ss_pred HHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 489 RATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 489 ~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
...++|.-.+.||+|+||.||+|+.. +|+.||+|.+..
T Consensus 40 ~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~ 78 (370)
T cd05621 40 MKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSK 78 (370)
T ss_pred CCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEH
Confidence 34466777789999999999999985 478999999853
No 131
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=94.80 E-value=0.028 Score=53.01 Aligned_cols=52 Identities=33% Similarity=0.376 Sum_probs=37.9
Q ss_pred cccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
.++..|++.. +.||+|..|+|||+.. +.|+..|.|++..... .-.++..+|+
T Consensus 75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl 128 (364)
T KOG0581|consen 75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILREL 128 (364)
T ss_pred ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHH
Confidence 4667777765 6799999999999998 4578899999954332 2245566665
No 132
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=94.80 E-value=0.051 Score=33.16 Aligned_cols=28 Identities=29% Similarity=0.726 Sum_probs=15.3
Q ss_pred ceecccchhhHHHHHHHHHhhheeeecc
Q 045304 436 ALLLGTVLPLSTIFMIVVILLILRYRKR 463 (540)
Q Consensus 436 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 463 (540)
.+..+++++++++++++.+++++||||+
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEecc
Confidence 3444555665555555555555556554
No 133
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=94.79 E-value=0.017 Score=55.52 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=34.3
Q ss_pred ccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|.. ..+..||||++..... ...+.|..|+
T Consensus 35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 89 (302)
T cd05055 35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSEL 89 (302)
T ss_pred HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHH
Confidence 4577788999999999999974 2345799999865432 2234566665
No 134
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=94.74 E-value=0.019 Score=56.16 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=27.4
Q ss_pred cCCccCeeccCCCCcEEEEEecC--CCEEEEEEecc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQD--GMEVAVKVFHL 526 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~--g~~vAVK~l~~ 526 (540)
+|.-...||+|+||.||+|...+ +..||||++..
T Consensus 31 ~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~ 66 (340)
T PTZ00426 31 DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEK 66 (340)
T ss_pred hcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEH
Confidence 45566889999999999998743 35899999854
No 135
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=94.73 E-value=0.035 Score=56.97 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=30.7
Q ss_pred ccCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~ 527 (540)
..|++ .-||+|++|.||+|++.+ |+.||||+++++
T Consensus 120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~ 155 (537)
T PRK04750 120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPD 155 (537)
T ss_pred HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcc
Confidence 45776 689999999999999988 999999999755
No 136
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=94.69 E-value=0.017 Score=57.28 Aligned_cols=43 Identities=26% Similarity=0.385 Sum_probs=35.1
Q ss_pred HHHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 484 YLELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 484 ~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
+.++....++|.-...||+|+||.||++... +|+.||+|++..
T Consensus 35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~ 78 (371)
T cd05622 35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK 78 (371)
T ss_pred HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEH
Confidence 3445556678888899999999999999885 578999999853
No 137
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=94.69 E-value=0.022 Score=54.27 Aligned_cols=42 Identities=33% Similarity=0.555 Sum_probs=32.1
Q ss_pred CeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
..||+|+||.||+|+.. +|..||+|++........++|..|+
T Consensus 18 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~ 60 (292)
T cd06644 18 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEI 60 (292)
T ss_pred heecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHH
Confidence 56999999999999985 4789999999654433345566664
No 138
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=94.69 E-value=0.027 Score=55.15 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=29.9
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
+.|...+.||+|+||.||+|+. .+|+.||||++..
T Consensus 15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~ 50 (342)
T cd07879 15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSR 50 (342)
T ss_pred cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecC
Confidence 4566778999999999999986 4689999999864
No 139
>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]
Probab=94.67 E-value=0.023 Score=56.10 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=32.7
Q ss_pred HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC 528 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~ 528 (540)
..++|.--.+||+|+||.||.+.=. .|...|.|+|....
T Consensus 139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~ 178 (550)
T KOG0605|consen 139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSE 178 (550)
T ss_pred CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHH
Confidence 4567888889999999999999774 48999999996543
No 140
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=94.64 E-value=0.026 Score=55.35 Aligned_cols=37 Identities=30% Similarity=0.534 Sum_probs=30.7
Q ss_pred HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
..+.|...+.||+|+||.||+|.- .+|..||||++..
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 50 (343)
T cd07880 13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYR 50 (343)
T ss_pred cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecc
Confidence 345677778899999999999985 4689999999854
No 141
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=94.63 E-value=0.026 Score=55.72 Aligned_cols=49 Identities=29% Similarity=0.212 Sum_probs=35.1
Q ss_pred hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc--CCcchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
.+.|.....||+|+||.||+|.- ..|..||||++.... ....+.+..|+
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~ 71 (359)
T cd07876 20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYREL 71 (359)
T ss_pred hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHH
Confidence 35666778899999999999986 458899999996432 12234455554
No 142
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=94.58 E-value=0.026 Score=54.54 Aligned_cols=46 Identities=30% Similarity=0.442 Sum_probs=33.3
Q ss_pred CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC---cchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG---AFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~---~~~~F~~E~ 539 (540)
|...+.||+|+||.||+|+. .+|..||||++...... ..++|..|+
T Consensus 27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~ 76 (317)
T cd06635 27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEV 76 (317)
T ss_pred hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHH
Confidence 55668899999999999997 46889999999643221 123465554
No 143
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=94.58 E-value=0.018 Score=54.95 Aligned_cols=48 Identities=29% Similarity=0.410 Sum_probs=33.4
Q ss_pred ccCCccCeeccCCCCcEEEEEecC------CCEEEEEEecccc-CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|...+ ...||||++.... .+...+|.+|+
T Consensus 12 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~ 66 (293)
T cd05053 12 DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEM 66 (293)
T ss_pred hHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHH
Confidence 446666889999999999998742 3579999996432 22234466664
No 144
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=94.56 E-value=0.034 Score=52.83 Aligned_cols=46 Identities=28% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
|...+.||+|++|.||+|.. .+|+.||||++........+.|.+|+
T Consensus 21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~ 67 (285)
T cd06648 21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEV 67 (285)
T ss_pred hhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHH
Confidence 44457899999999999986 56889999998644333344465554
No 145
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=94.43 E-value=0.027 Score=56.81 Aligned_cols=44 Identities=41% Similarity=0.653 Sum_probs=32.4
Q ss_pred ccCeeccCCCCcEEEEEecC---C--CEEEEEEeccccCC-cchhhhhhc
Q 045304 496 ENNLIGRGGFGSVYKARIQD---G--MEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l~~---g--~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
...+||+|-||.||+|++.+ | ..||||.-+.++.- ..+-|+.|.
T Consensus 393 l~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa 442 (974)
T KOG4257|consen 393 LKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEA 442 (974)
T ss_pred HHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHH
Confidence 34789999999999999843 3 35899988765533 344588774
No 146
>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=94.38 E-value=0.026 Score=54.18 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=32.4
Q ss_pred cCCccCeeccCCCCcEEEEEe--------cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI--------QDGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l--------~~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
+|.....||+|+||.||+|.. .++..||||++.... ....+++.+|+
T Consensus 16 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~ 71 (304)
T cd05101 16 KLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM 71 (304)
T ss_pred HeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHH
Confidence 455567899999999999974 234589999986432 22234566664
No 147
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=94.16 E-value=0.043 Score=54.29 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=30.0
Q ss_pred hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
.+.|.-.+.||+|+||.||+|.- ..++.||||++..
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 59 (364)
T cd07875 23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 59 (364)
T ss_pred hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCc
Confidence 45677778899999999999986 3578999999964
No 148
>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]
Probab=94.08 E-value=0.023 Score=57.15 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=35.9
Q ss_pred CCccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
..-.+.+|-|.||.||.|++.. .-.||||.|+++.+. ..||+.|.
T Consensus 269 ItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMe-veEFLkEA 314 (1157)
T KOG4278|consen 269 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME-VEEFLKEA 314 (1157)
T ss_pred eeeeeccCCCcccceeeeeeeccceeeehhhhhhcchh-HHHHHHHH
Confidence 3345789999999999999953 468999999877654 67888875
No 149
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=94.06 E-value=0.057 Score=55.17 Aligned_cols=38 Identities=32% Similarity=0.452 Sum_probs=31.9
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC 528 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~ 528 (540)
-++|.-..++|+|.||+||.+.+. +++..|||.|+.+.
T Consensus 367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~ 405 (694)
T KOG0694|consen 367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGD 405 (694)
T ss_pred ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccc
Confidence 356777789999999999999994 57789999997765
No 150
>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express
Probab=94.03 E-value=0.04 Score=52.56 Aligned_cols=42 Identities=31% Similarity=0.256 Sum_probs=31.3
Q ss_pred CeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
..||+|+||.||+|.. .+|..||||++........+.|..|+
T Consensus 28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~ 70 (292)
T cd06658 28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEV 70 (292)
T ss_pred hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHH
Confidence 4599999999999987 45889999998654433344566664
No 151
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=94.00 E-value=0.042 Score=54.08 Aligned_cols=37 Identities=27% Similarity=0.258 Sum_probs=30.5
Q ss_pred HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
..+.|...+.||+|+||.||+|.- ..|+.||||++..
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 52 (355)
T cd07874 15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR 52 (355)
T ss_pred hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCC
Confidence 345677778899999999999975 3578999999964
No 152
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=93.93 E-value=0.019 Score=62.39 Aligned_cols=40 Identities=48% Similarity=0.721 Sum_probs=32.6
Q ss_pred HHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 488 CRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 488 ~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
-+.-++|-+-.++|+||||.|||++= -||+..||||+...
T Consensus 475 SRY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~ 515 (1351)
T KOG1035|consen 475 SRYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLK 515 (1351)
T ss_pred hhHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCc
Confidence 34566787888999999999999963 27999999999543
No 153
>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=93.83 E-value=0.046 Score=51.79 Aligned_cols=44 Identities=41% Similarity=0.561 Sum_probs=31.7
Q ss_pred ccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhc
Q 045304 496 ENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
..+.||+|.||+||.+...+ |...|||..........++.+.|+
T Consensus 21 ~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei 65 (313)
T KOG0198|consen 21 KGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREI 65 (313)
T ss_pred hhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHH
Confidence 44789999999999999965 899999998654321133344443
No 154
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=93.81 E-value=0.058 Score=51.83 Aligned_cols=34 Identities=35% Similarity=0.575 Sum_probs=29.1
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
+|.....||+|+||.||+|+-. +|+.||||++..
T Consensus 13 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~ 47 (310)
T cd07865 13 KYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLM 47 (310)
T ss_pred heEEEEEeecCCCEEEEEEEECCCCcEEEEEEEec
Confidence 5667788999999999999874 589999999854
No 155
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.70 E-value=0.036 Score=27.10 Aligned_cols=14 Identities=64% Similarity=0.828 Sum_probs=4.7
Q ss_pred CCCEeeCCCCCCCC
Q 045304 259 SLRTLSLGSNELTS 272 (540)
Q Consensus 259 ~L~~L~l~~n~l~~ 272 (540)
+|+.|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
No 156
>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]
Probab=93.59 E-value=0.045 Score=57.36 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=35.1
Q ss_pred ccCeeccCCCCcEEEEEecCC-CEEEEEEeccccCCcchhhhhhc
Q 045304 496 ENNLIGRGGFGSVYKARIQDG-MEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l~~g-~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
-+++|.+|||+.||.|....+ ..+|+||+-.....+.+...+||
T Consensus 41 V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI 85 (738)
T KOG1989|consen 41 VEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREI 85 (738)
T ss_pred EEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHH
Confidence 358899999999999999776 99999999655555556666666
No 157
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.55 E-value=0.00046 Score=69.54 Aligned_cols=92 Identities=29% Similarity=0.286 Sum_probs=44.7
Q ss_pred hccCCCCCCeeeccCCccccccC----ccccCC-CCCCeeeeeCccccC----cCCccccCCCCCCeEEcCCCCCcc---
Q 045304 181 EISNLTNLIIIYLGGNKLNGSIP----ITLSKL-QKLQGLSLADNKLEG----SIPNNICRLTELYELDLGSNKFSR--- 248 (540)
Q Consensus 181 ~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l-~~L~~L~l~~n~~~~----~~p~~~~~l~~L~~L~l~~n~l~~--- 248 (540)
.+...+.|+.|++++|.+...-- ..+... ..++.|++..|.++. .+...+.....++.++++.|.+..
T Consensus 110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~ 189 (478)
T KOG4308|consen 110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL 189 (478)
T ss_pred HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence 34455666666666666552111 111222 345556665555543 233344445666666666665531
Q ss_pred -ccCcc----CCCCCCCCEeeCCCCCCCC
Q 045304 249 -SIPAC----FSNLASLRTLSLGSNELTS 272 (540)
Q Consensus 249 -~~~~~----~~~l~~L~~L~l~~n~l~~ 272 (540)
.++.. +....++++|++++|.++.
T Consensus 190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~ 218 (478)
T KOG4308|consen 190 LVLSQALESAASPLSSLETLKLSRCGVTS 218 (478)
T ss_pred HHHhhhhhhhhcccccHHHHhhhhcCcCh
Confidence 11111 2234556666666666553
No 158
>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.54 E-value=0.05 Score=52.32 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=32.0
Q ss_pred cCCccCeeccCCCCcEEEEEec--------CCCEEEEEEecccc-CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||.||+|... ++..||||.+.... .....+|..|+
T Consensus 19 ~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~ 74 (307)
T cd05098 19 RLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEM 74 (307)
T ss_pred HeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHH
Confidence 3455578999999999999752 23579999997532 22234465564
No 159
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.46 E-value=0.0003 Score=70.84 Aligned_cols=184 Identities=25% Similarity=0.306 Sum_probs=83.4
Q ss_pred CCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCC---ccccccccccCcEEEccCCccee----cCChh
Q 045304 109 LNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP---GTSVGNLSHSLEYFYMPNCNVSG----GIPEE 181 (540)
Q Consensus 109 L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~~L~~L~l~~~~~~~----~~~~~ 181 (540)
+.+|.|.+|.+....... +...+...+.|..|++++|.+...-. ...+....+.+++|.+..|.+++ .+...
T Consensus 89 l~~L~L~~~~l~~~~~~~-l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEE-LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHH-HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 455555555554432111 33445555666666666666542100 00011101345555665565543 33445
Q ss_pred ccCCCCCCeeeccCCcccc----ccCcccc----CCCCCCeeeeeCccccCc----CCccccCCCC-CCeEEcCCCCCcc
Q 045304 182 ISNLTNLIIIYLGGNKLNG----SIPITLS----KLQKLQGLSLADNKLEGS----IPNNICRLTE-LYELDLGSNKFSR 248 (540)
Q Consensus 182 l~~l~~L~~L~l~~n~l~~----~~~~~l~----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~-L~~L~l~~n~l~~ 248 (540)
+.....++.+++..|.+.. .++..+. ...++++|++.+|.++.. +...+...+. +..|++..|++..
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 5556667777777776531 1112222 345566666666655421 1112223333 4456666665542
Q ss_pred c----cCccCCCC-CCCCEeeCCCCCCCC-----CCccccCCCCCcEEECCCCcc
Q 045304 249 S----IPACFSNL-ASLRTLSLGSNELTS-----IPLTFWNLKDILYLNFSSNFL 293 (540)
Q Consensus 249 ~----~~~~~~~l-~~L~~L~l~~n~l~~-----ip~~~~~l~~L~~L~L~~n~l 293 (540)
. ....+..+ ..++.++++.|.++. +...+..++.++++.+++|.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 2 12223333 445555555555543 222333344444444444443
No 160
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=93.43 E-value=0.02 Score=59.60 Aligned_cols=34 Identities=35% Similarity=0.568 Sum_probs=29.1
Q ss_pred cCCccCeeccCCCCc-EEEEEecCCCEEEEEEeccc
Q 045304 493 RFSENNLIGRGGFGS-VYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~-Vykg~l~~g~~vAVK~l~~~ 527 (540)
-|+.++++|.|.-|+ ||+|++ +|+.|||||+-.+
T Consensus 510 ~~~~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~e 544 (903)
T KOG1027|consen 510 FFSPKEILGYGSNGTVVFRGVY-EGREVAVKRLLEE 544 (903)
T ss_pred eeccHHHcccCCCCcEEEEEee-CCceehHHHHhhH
Confidence 477888999999985 899999 4899999999544
No 161
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=93.42 E-value=0.054 Score=53.06 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=31.0
Q ss_pred HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
..++|.....||+|+||.||+|... +|+.||||++..
T Consensus 13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~ 50 (343)
T cd07851 13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSR 50 (343)
T ss_pred ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEeccc
Confidence 3556777788999999999999985 578999999864
No 162
>PHA02882 putative serine/threonine kinase; Provisional
Probab=93.36 E-value=0.066 Score=51.10 Aligned_cols=31 Identities=32% Similarity=0.638 Sum_probs=23.1
Q ss_pred CCccCeeccCCCCcEEEEEecCC----CEEEEEEe
Q 045304 494 FSENNLIGRGGFGSVYKARIQDG----MEVAVKVF 524 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~~g----~~vAVK~l 524 (540)
|.-.++||+|+||+||+|...++ ..+|+|+.
T Consensus 14 y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~ 48 (294)
T PHA02882 14 WKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIE 48 (294)
T ss_pred eEEeeEEecCCCceEEEEEEcCCcccccceEEEec
Confidence 44457899999999999998654 35566653
No 163
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=93.34 E-value=0.065 Score=52.70 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=30.9
Q ss_pred HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
..+.|.....||+|+||.||+|.- .+|..||||++..
T Consensus 14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~ 51 (353)
T cd07850 14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSR 51 (353)
T ss_pred hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCc
Confidence 345677788999999999999986 4689999999853
No 164
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=93.22 E-value=0.076 Score=51.23 Aligned_cols=33 Identities=39% Similarity=0.502 Sum_probs=26.9
Q ss_pred CCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
|...+.||+|+||+||+|+.. +|..||||++..
T Consensus 23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~ 56 (313)
T cd06633 23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSY 56 (313)
T ss_pred hhcceeeccCCCeEEEEEEECCCCcEEEEEEEec
Confidence 334467999999999999874 578999999964
No 165
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=93.15 E-value=0.062 Score=58.32 Aligned_cols=36 Identities=39% Similarity=0.578 Sum_probs=30.6
Q ss_pred hccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
-..|.-...||+|+||+||+|+-.+|+.||+|.=+.
T Consensus 697 ~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P 732 (974)
T KOG1166|consen 697 GEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKP 732 (974)
T ss_pred ceeEEEEeeeccccceEEEEeecCCCcEEEEEeecC
Confidence 345666788999999999999999999999998643
No 166
>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=93.11 E-value=0.061 Score=51.92 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=32.0
Q ss_pred cCCccCeeccCCCCcEEEEEec--------CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
+|.-.+.||+|+||.||+|+-. .+..||||++..... ....+|..|+
T Consensus 13 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~ 68 (314)
T cd05099 13 RLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEM 68 (314)
T ss_pred HeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHH
Confidence 4555688999999999999742 245799999864322 2234466664
No 167
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=93.10 E-value=0.08 Score=52.17 Aligned_cols=42 Identities=36% Similarity=0.457 Sum_probs=32.0
Q ss_pred CeeccCCCCcEEEEEecC-CCEEEEEEeccccCCc---chhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGA---FKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~---~~~F~~E~ 539 (540)
..||+|.||.||+++-.. |+.+|+|.+....... ......|+
T Consensus 41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev 86 (382)
T KOG0032|consen 41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREV 86 (382)
T ss_pred hhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHH
Confidence 679999999999999866 9999999996544322 23466665
No 168
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=92.68 E-value=0.065 Score=51.56 Aligned_cols=33 Identities=42% Similarity=0.602 Sum_probs=27.2
Q ss_pred CCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
|+..+.||+|+||.||+|... +|..||||++..
T Consensus 17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~ 50 (308)
T cd06634 17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSY 50 (308)
T ss_pred HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEec
Confidence 444567999999999999974 578999999864
No 169
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.56 E-value=0.11 Score=28.59 Aligned_cols=21 Identities=43% Similarity=0.447 Sum_probs=11.9
Q ss_pred CCCCEEEcccCcCccccchhhh
Q 045304 34 STLKVFEVSNNSLSGSLSSIAG 55 (540)
Q Consensus 34 ~~L~~L~l~~n~l~~~~~~~~~ 55 (540)
++|++|+|++|.++ .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666655 5555543
No 170
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.56 E-value=0.11 Score=28.59 Aligned_cols=21 Identities=43% Similarity=0.447 Sum_probs=11.9
Q ss_pred CCCCEEEcccCcCccccchhhh
Q 045304 34 STLKVFEVSNNSLSGSLSSIAG 55 (540)
Q Consensus 34 ~~L~~L~l~~n~l~~~~~~~~~ 55 (540)
++|++|+|++|.++ .+|..+|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45566666666655 5555543
No 171
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=92.47 E-value=0.18 Score=52.74 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEE
Q 045304 488 CRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKV 523 (540)
Q Consensus 488 ~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~ 523 (540)
...+..+...+.||+|+||+||+|.+.+. .+++|+
T Consensus 329 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~ 363 (535)
T PRK09605 329 EEVKRRKIPDHLIGKGAEADIKKGEYLGR-DAVIKE 363 (535)
T ss_pred cccccccCccceeccCCcEEEEEEeecCc-cceeEE
Confidence 33444556788999999999999999654 455554
No 172
>PHA03209 serine/threonine kinase US3; Provisional
Probab=92.21 E-value=0.16 Score=50.09 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=29.5
Q ss_pred HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEec
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFH 525 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~ 525 (540)
...+|.....||+|+||.||+|+.. .+..||+|...
T Consensus 64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~ 100 (357)
T PHA03209 64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQ 100 (357)
T ss_pred hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCC
Confidence 3456888889999999999999985 45789999753
No 173
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=92.19 E-value=0.12 Score=52.84 Aligned_cols=36 Identities=31% Similarity=0.366 Sum_probs=30.7
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC 528 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~ 528 (540)
..|++ +-|+.++.|.||+|++.+|+.||||+.+++-
T Consensus 126 ~eF~~-~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi 161 (517)
T COG0661 126 SEFEP-EPIASASIAQVHRAVLKSGEEVAVKVQRPGI 161 (517)
T ss_pred HHcCC-CchhhhhHhhheeEEecCCCEEEEEecCCCh
Confidence 34654 5689999999999999999999999997754
No 174
>PHA03212 serine/threonine kinase US3; Provisional
Probab=92.10 E-value=0.12 Score=51.60 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=28.4
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEec
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFH 525 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~ 525 (540)
+.|.-.+.||+|+||.||++.- ..|+.||||+..
T Consensus 92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~ 126 (391)
T PHA03212 92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ 126 (391)
T ss_pred CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh
Confidence 4577778899999999999986 457899999864
No 175
>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]
Probab=91.95 E-value=0.084 Score=49.86 Aligned_cols=37 Identities=35% Similarity=0.625 Sum_probs=30.7
Q ss_pred hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
-++|.--++||+|+||+||...- +.|+..|+|+|+..
T Consensus 24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~ 61 (357)
T KOG0598|consen 24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKK 61 (357)
T ss_pred hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhh
Confidence 35678889999999999999876 45889999999654
No 176
>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional
Probab=91.80 E-value=0.14 Score=46.32 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=31.0
Q ss_pred hccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC 528 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~ 528 (540)
.+.+...+++|.||||.||...- ++..+|||.+.+..
T Consensus 30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~ 66 (232)
T PRK10359 30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKV 66 (232)
T ss_pred hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhc
Confidence 46788889999999999999766 57789999997543
No 177
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=91.31 E-value=0.15 Score=49.75 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=30.3
Q ss_pred CccCeeccCCCCcEEEEEec--------CCCEEEEEEecccc-CCcchhhhhhc
Q 045304 495 SENNLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 495 ~~~~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
.-...||+|+||.||+|.-. .+..||||.+.... ....++|..|+
T Consensus 15 ~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 68 (334)
T cd05100 15 TLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEM 68 (334)
T ss_pred eecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHH
Confidence 34467999999999999742 12479999886432 22235566665
No 178
>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=91.27 E-value=0.27 Score=43.90 Aligned_cols=34 Identities=35% Similarity=0.567 Sum_probs=27.6
Q ss_pred CCccCeeccCCCCcEEEEE-ecCCCEEEEEEeccc
Q 045304 494 FSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLH 527 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~ 527 (540)
+.-...||+|+||.+|.|. +.+|..||||.=+..
T Consensus 17 y~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~ 51 (341)
T KOG1163|consen 17 YKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK 51 (341)
T ss_pred eEEEEeecCCchhheeeeeeccCCceEEEEeeccc
Confidence 4445679999999999996 478999999987543
No 179
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.04 E-value=0.0048 Score=54.13 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=67.3
Q ss_pred ccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccc
Q 045304 49 SLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNF 128 (540)
Q Consensus 49 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 128 (540)
.+|..-.......+.||++.|.+. .+-..+..++.|..|+++.|++. ..|..++....+.++++++|..+. .
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~------~ 103 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ------Q 103 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh------C
Confidence 444333356677788888877765 44555666777788888888776 567777878888888888887776 5
Q ss_pred cccCCCCCCCCEEECcCCCCC
Q 045304 129 LSSLSNCKTLTYIDLSDNPLD 149 (540)
Q Consensus 129 ~~~l~~l~~L~~L~l~~n~l~ 149 (540)
|.++...+.++++++.++.+.
T Consensus 104 p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CccccccCCcchhhhccCcch
Confidence 667788888888888888764
No 180
>PHA03211 serine/threonine kinase US3; Provisional
Probab=91.04 E-value=0.18 Score=51.41 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=27.2
Q ss_pred cCCccCeeccCCCCcEEEEEecC-CCEEEEEEe
Q 045304 493 RFSENNLIGRGGFGSVYKARIQD-GMEVAVKVF 524 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l 524 (540)
+|.-...||+|+||.||+|+... ++.||||+.
T Consensus 170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~ 202 (461)
T PHA03211 170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAG 202 (461)
T ss_pred CeEEEEEEccCCCeEEEEEEECCCCCEEEEecc
Confidence 46667889999999999999854 788999975
No 181
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.97 E-value=0.0049 Score=54.08 Aligned_cols=88 Identities=16% Similarity=0.107 Sum_probs=54.9
Q ss_pred cccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 045304 29 KVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRN 108 (540)
Q Consensus 29 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 108 (540)
.+......+.||++.|++. .+...+ ..++.|..|+++.|.+. ..|..++....++.+++..|..+ ..|.+++..++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~-s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNF-SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccch-HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 4445566667777776654 333333 34566666777766665 56666666666666776666665 45666777777
Q ss_pred CCEEECcCcccc
Q 045304 109 LNKVTLYNNYLT 120 (540)
Q Consensus 109 L~~L~l~~n~~~ 120 (540)
++++++-.|.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 777766666543
No 182
>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]
Probab=90.22 E-value=0.12 Score=48.72 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=25.9
Q ss_pred ccCeeccCCCCcEEEEEe-cCCCEEEEEEec
Q 045304 496 ENNLIGRGGFGSVYKARI-QDGMEVAVKVFH 525 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~ 525 (540)
..+.||+|.||.|.+|+- .+|..||||++.
T Consensus 26 ~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~ 56 (359)
T KOG0660|consen 26 LIEPIGRGAYGVVCSAKDKRTGEKVAIKKIL 56 (359)
T ss_pred ccccccCcceeeEEEEEEcCCCCEeehhhhh
Confidence 346799999999999987 568999999995
No 183
>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]
Probab=90.14 E-value=0.18 Score=43.85 Aligned_cols=29 Identities=41% Similarity=0.589 Sum_probs=23.7
Q ss_pred CeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
..||+|+||.|-|-.+ .+|+..||||+..
T Consensus 52 ~elGrGayG~vekmrh~~sg~imAvKri~~ 81 (282)
T KOG0984|consen 52 EELGRGAYGVVEKMRHIQSGTIMAVKRIRA 81 (282)
T ss_pred hhhcCCccchhhheeeccCCeEEEEeeehh
Confidence 4599999998866654 5799999999964
No 184
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.07 E-value=0.27 Score=27.02 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=10.7
Q ss_pred CCCCEeeCCCCCCCCCCcc
Q 045304 258 ASLRTLSLGSNELTSIPLT 276 (540)
Q Consensus 258 ~~L~~L~l~~n~l~~ip~~ 276 (540)
++|++|+|++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555666666666555543
No 185
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.07 E-value=0.27 Score=27.02 Aligned_cols=19 Identities=42% Similarity=0.698 Sum_probs=10.7
Q ss_pred CCCCEeeCCCCCCCCCCcc
Q 045304 258 ASLRTLSLGSNELTSIPLT 276 (540)
Q Consensus 258 ~~L~~L~l~~n~l~~ip~~ 276 (540)
++|++|+|++|+++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555666666666555543
No 186
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=89.76 E-value=0.16 Score=55.85 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=34.7
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
.++|.-...||+|+||+||+|... .+..||+|.+..... .....|..|+
T Consensus 12 l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI 63 (1021)
T PTZ00266 12 LNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEV 63 (1021)
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHH
Confidence 345666688999999999999874 467899999864321 1234466665
No 187
>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]
Probab=89.73 E-value=0.15 Score=51.10 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=31.1
Q ss_pred cccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
.++|++|.+. +-+|+|+-|.||.|.|. +..||||+.+.
T Consensus 120 eiPFe~IsEL-------eWlGSGaQGAVF~Grl~-netVAVKKV~e 157 (904)
T KOG4721|consen 120 EIPFEEISEL-------EWLGSGAQGAVFLGRLH-NETVAVKKVRE 157 (904)
T ss_pred cCCHHHhhhh-------hhhccCcccceeeeecc-CceehhHHHhh
Confidence 4677776554 56999999999999996 68999999854
No 188
>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional
Probab=89.24 E-value=0.68 Score=43.36 Aligned_cols=42 Identities=17% Similarity=0.111 Sum_probs=30.8
Q ss_pred HHHHHHhccCCccCee--ccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 485 LELCRATDRFSENNLI--GRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 485 ~~l~~at~~f~~~~~i--g~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
.+.....++|.-.+.+ |+|+||.||+++- .+|..+|+|....
T Consensus 7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~ 51 (267)
T PHA03390 7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKA 51 (267)
T ss_pred HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEeh
Confidence 4444445555555555 9999999999987 4578899999854
No 189
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=89.04 E-value=0.29 Score=50.33 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCccCeeccCCCCcEEEEEec-C-CCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARIQ-D-GMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~-~-g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
|.-.++||+|+||.||+|.-. + ++.||+|++.....+....|..|+
T Consensus 69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~ 116 (478)
T PTZ00267 69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSEL 116 (478)
T ss_pred EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHH
Confidence 444578999999999999753 3 577899887543333334455564
No 190
>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]
Probab=88.72 E-value=0.32 Score=51.54 Aligned_cols=42 Identities=33% Similarity=0.396 Sum_probs=31.4
Q ss_pred CeeccCCCCcEEEEEec--------CCCEEEEEEeccccCC-cchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQ--------DGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~--------~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+.+|+|.||.|++|.+. ....||||.++..... ..+.|..|+
T Consensus 302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El 352 (609)
T KOG0200|consen 302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSEL 352 (609)
T ss_pred ceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHH
Confidence 48999999999999873 1357999999765533 345677775
No 191
>PHA03207 serine/threonine kinase US3; Provisional
Probab=88.59 E-value=0.36 Score=48.21 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=27.2
Q ss_pred cCCccCeeccCCCCcEEEEEecC---CCEEEEEEecc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQD---GMEVAVKVFHL 526 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~---g~~vAVK~l~~ 526 (540)
.|.-...||+|+||.||++...+ +..||||++..
T Consensus 93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~ 129 (392)
T PHA03207 93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTG 129 (392)
T ss_pred ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccc
Confidence 45666789999999999998633 56899999854
No 192
>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=88.55 E-value=0.16 Score=45.47 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=32.8
Q ss_pred cCeeccCCCCcEEEEE-ecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 497 NNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
...+|+|||..||.++ +.++...|+||+.....++.+.-+.|+
T Consensus 26 ~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEi 69 (302)
T KOG2345|consen 26 QRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREI 69 (302)
T ss_pred eeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHH
Confidence 4679999999999987 678889999999765544444455554
No 193
>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=88.43 E-value=0.29 Score=45.49 Aligned_cols=52 Identities=27% Similarity=0.384 Sum_probs=38.4
Q ss_pred cHHHHHHHhccCCccCeeccCCCCcEEEEE-ecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 483 SYLELCRATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 483 ~~~~l~~at~~f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+|+|+-+.|+ +++|+|.||.|--.+ +..|...|||.+.......+....+||
T Consensus 74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREV 126 (463)
T KOG0607|consen 74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREV 126 (463)
T ss_pred hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHH
Confidence 4678877776 689999999997664 567899999999765433344455555
No 194
>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]
Probab=88.39 E-value=0.17 Score=48.65 Aligned_cols=39 Identities=33% Similarity=0.413 Sum_probs=31.5
Q ss_pred HhccCCccCeeccCCCCcEEEEEecC----CCEEEEEEecccc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHC 528 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~ 528 (540)
.-+.|...+.||+|.|++||+|++.. ...||+|.+...+
T Consensus 34 ~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts 76 (418)
T KOG1167|consen 34 ISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTS 76 (418)
T ss_pred hhhhhhhhccccccchhhhhhhhHhhhccccceEeeeeccccc
Confidence 34567788999999999999999843 5689999996544
No 195
>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]
Probab=87.94 E-value=0.54 Score=47.98 Aligned_cols=30 Identities=37% Similarity=0.579 Sum_probs=25.9
Q ss_pred cCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 497 NNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
..+||+|.||.|-|+.= ..|+.||||.++.
T Consensus 191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN 221 (586)
T KOG0667|consen 191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKN 221 (586)
T ss_pred EEEecccccceeEEEEecCCCcEEEEEeecc
Confidence 46899999999999975 4489999999964
No 196
>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.95 E-value=0.71 Score=45.48 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=27.5
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
+.+.-...||+|+||+||.|.- ..|..||||.+..
T Consensus 17 g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~ 52 (370)
T KOG0583|consen 17 GKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDR 52 (370)
T ss_pred CceeeeeeecCCCCeeEEEeeeccCCCeEEEEEech
Confidence 3344457799999999999965 5689999997654
No 197
>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.79 E-value=0.68 Score=46.48 Aligned_cols=33 Identities=42% Similarity=0.591 Sum_probs=27.0
Q ss_pred ccCeeccCCCCcEEEEE-ecCCCEEEEEEecccc
Q 045304 496 ENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHC 528 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~ 528 (540)
.-..||+|..|.||-|. ...++.||||++....
T Consensus 277 ~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~ 310 (550)
T KOG0578|consen 277 DFKKIGQGATGGVYVARKISTKQEVAIKRMDLRK 310 (550)
T ss_pred chhhhccccccceeeeeeccCCceEEEEEEEecc
Confidence 34569999999999995 5678999999996544
No 198
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.50 E-value=0.1 Score=45.18 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=26.8
Q ss_pred cCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCc-ceecCChhccCCCCCCeeecc
Q 045304 131 SLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN-VSGGIPEEISNLTNLIIIYLG 194 (540)
Q Consensus 131 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~ 194 (540)
.+.+++.++.|.+.+|.--+......++...++|+.|++++|. ++..--..+..+++|+.|.+.
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 3444445555555544332221112233333455555555443 332222334444555554443
No 199
>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=86.39 E-value=0.64 Score=45.37 Aligned_cols=31 Identities=35% Similarity=0.490 Sum_probs=26.5
Q ss_pred CeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304 498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC 528 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~ 528 (540)
.+||.|..++||+|.- +-+..||||++..+.
T Consensus 32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEk 63 (516)
T KOG0582|consen 32 EVIGVGASAVVYLARCIPTNEVVAIKIINLEK 63 (516)
T ss_pred EEEeccceeEeeeeeecccCCEEEEEEeehhh
Confidence 5799999999999975 778999999996543
No 200
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=86.31 E-value=0.52 Score=44.22 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=26.0
Q ss_pred cCCccCeeccCCCCcEEEEE-ecCCCEEEEEEe
Q 045304 493 RFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVF 524 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l 524 (540)
+|.-...||+|.||+.+.|+ |-++++||||-=
T Consensus 29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfE 61 (449)
T KOG1165|consen 29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFE 61 (449)
T ss_pred cceeccccccCcceeeecccccccCceEEEEec
Confidence 34455789999999999996 557899999964
No 201
>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=85.98 E-value=0.79 Score=44.37 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=26.4
Q ss_pred cCCccCeeccCCCCcEEEEEecCC--CEEEEEEecc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQDG--MEVAVKVFHL 526 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~g--~~vAVK~l~~ 526 (540)
.|.-...||+|+||.||.+.=.+. ..+|+|.-..
T Consensus 19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~ 54 (322)
T KOG1164|consen 19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKK 54 (322)
T ss_pred ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEe
Confidence 566678899999999999986543 3678887654
No 202
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.31 E-value=0.14 Score=51.99 Aligned_cols=41 Identities=32% Similarity=0.537 Sum_probs=30.3
Q ss_pred eccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhcC
Q 045304 500 IGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVECN 540 (540)
Q Consensus 500 ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~~ 540 (540)
+|-|+||.||||+-.+ +...|-|++...+.....+|+.||+
T Consensus 40 LGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIe 81 (1187)
T KOG0579|consen 40 LGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIE 81 (1187)
T ss_pred hcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhh
Confidence 7889999999999865 3445778886555545667887774
No 203
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.95 E-value=0.82 Score=47.34 Aligned_cols=42 Identities=29% Similarity=0.486 Sum_probs=28.7
Q ss_pred cCeeccCCCCcEEEEEecCC-CEEEEEEeccccCCcchhhhhh
Q 045304 497 NNLIGRGGFGSVYKARIQDG-MEVAVKVFHLHCSGAFKSFDVE 538 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~~g-~~vAVK~l~~~~~~~~~~F~~E 538 (540)
.-++|+|.||+||-|.=.+. ..+|||-+.....+..+-...|
T Consensus 580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEE 622 (1226)
T KOG4279|consen 580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEE 622 (1226)
T ss_pred eEEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHH
Confidence 34799999999999986544 4689999965443333333333
No 204
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.42 E-value=1.1 Score=43.25 Aligned_cols=31 Identities=32% Similarity=0.534 Sum_probs=25.8
Q ss_pred cCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 497 NNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
...+|+|+||.|-.|.= .+|+.||||.++..
T Consensus 177 ~~~LGsGafg~Vkla~e~~tgk~vAiKIi~kr 208 (475)
T KOG0615|consen 177 SKTLGSGAFGLVKLAYEKKTGKQVAIKIINKR 208 (475)
T ss_pred eeeecCCceeEEEEEEEcccCcEEEeeeeehh
Confidence 35699999999999864 57999999999643
No 205
>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]
Probab=83.17 E-value=0.44 Score=45.79 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=28.1
Q ss_pred eeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcch
Q 045304 499 LIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFK 533 (540)
Q Consensus 499 ~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~ 533 (540)
.+|+|.||.|-+|.= ..|+.||||-++.+..++.+
T Consensus 60 tLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeq 95 (668)
T KOG0611|consen 60 TLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQ 95 (668)
T ss_pred HhcCCcccceeehhhccCCcEeehhhhhhhhcccHH
Confidence 499999999999975 56999999999766544433
No 206
>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]
Probab=83.10 E-value=0.17 Score=49.30 Aligned_cols=36 Identities=28% Similarity=0.581 Sum_probs=30.2
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
+.|+.-.+||+||||.||-.... .|...|.|+|...
T Consensus 185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KK 221 (591)
T KOG0986|consen 185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKK 221 (591)
T ss_pred cceeeeEEEecccccceeEEEEecchhhHHHHHHHHH
Confidence 45888899999999999998874 4888999988543
No 207
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.95 E-value=0.18 Score=43.72 Aligned_cols=90 Identities=16% Similarity=0.162 Sum_probs=49.8
Q ss_pred CCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCccccc-CCcccc-CCCCCCEEEccCCc-ccccCCcc
Q 045304 26 IPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGT-IPHFIF-NASKLSLLELGDNS-FSGFIPDT 102 (540)
Q Consensus 26 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~-~l~~L~~L~L~~n~-~~~~~~~~ 102 (540)
.|.....-..++.+|-++..+...--..+ ..++.++.|.+.+|.-.+. --+.++ -.++|+.|+++.|. |+..--..
T Consensus 93 lp~~~~~~~~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 93 LPGPNADNVKIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred CCCCCCCcceEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence 34333333456677777777664333333 5667777777777642211 001112 23678888888664 44333344
Q ss_pred ccCCCCCCEEECcC
Q 045304 103 FGNLRNLNKVTLYN 116 (540)
Q Consensus 103 ~~~l~~L~~L~l~~ 116 (540)
+.++++|+.|.+.+
T Consensus 172 L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYD 185 (221)
T ss_pred HHHhhhhHHHHhcC
Confidence 56677777777654
No 208
>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=82.23 E-value=1.2 Score=43.96 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=27.4
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
+.|.-...||+|.||.|-+|.= .+|+.||||.+..
T Consensus 97 Nqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K 132 (576)
T KOG0585|consen 97 NQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPK 132 (576)
T ss_pred hheehhhhhcCCccceEEEEeecCCCcEEEEEeech
Confidence 3444456699999999988864 4689999999954
No 209
>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]
Probab=81.92 E-value=0.48 Score=44.01 Aligned_cols=31 Identities=42% Similarity=0.590 Sum_probs=24.1
Q ss_pred cCeeccCCCCcEEEEEecCC-----CEEEEEEeccc
Q 045304 497 NNLIGRGGFGSVYKARIQDG-----MEVAVKVFHLH 527 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~~g-----~~vAVK~l~~~ 527 (540)
...||+|.||.||||+-.++ ...|+|+++.+
T Consensus 29 ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~ 64 (438)
T KOG0666|consen 29 IGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGE 64 (438)
T ss_pred cceecccccceeeEeeeccCCcccchhhHHHHHhcc
Confidence 35699999999999976432 26899999754
No 210
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.85 E-value=0.24 Score=26.68 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=4.0
Q ss_pred CCCEEEcccCcC
Q 045304 35 TLKVFEVSNNSL 46 (540)
Q Consensus 35 ~L~~L~l~~n~l 46 (540)
+|++|+|++|.+
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 334444444433
No 211
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=81.73 E-value=1.6 Score=44.73 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=30.2
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC 528 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~ 528 (540)
..|++ .-||.-+.|.||||++++|+.||||+-+++-
T Consensus 162 ~~f~~-~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l 197 (538)
T KOG1235|consen 162 SEFDE-EPIAAASLAQVHRARLKNGEDVAVKVQHPGL 197 (538)
T ss_pred HhcCc-chhhhcchhheEEEEecCCCEEEEEecCcCh
Confidence 34654 4689999999999999999999999987653
No 212
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=81.60 E-value=0.26 Score=47.77 Aligned_cols=29 Identities=48% Similarity=0.775 Sum_probs=23.8
Q ss_pred cCeeccCCCCcEEEEE-ecCCCEEEEEEec
Q 045304 497 NNLIGRGGFGSVYKAR-IQDGMEVAVKVFH 525 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~ 525 (540)
-+++|+|||..||||. +...+.||||.=.
T Consensus 468 LhLLGrGGFSEVyKAFDl~EqRYvAvKIHq 497 (775)
T KOG1151|consen 468 LHLLGRGGFSEVYKAFDLTEQRYVAVKIHQ 497 (775)
T ss_pred HHHhccccHHHHHHhcccchhheeeEeeeh
Confidence 3679999999999996 5566889999753
No 213
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=80.11 E-value=1.4 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=17.1
Q ss_pred CCccCeeccCCCCcEEEEEec
Q 045304 494 FSENNLIGRGGFGSVYKARIQ 514 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~ 514 (540)
....+.+|+|+||+||-|.=.
T Consensus 996 it~~relg~gsfg~Vy~g~~n 1016 (1025)
T KOG4258|consen 996 ITLGRELGQGSFGMVYEGNAN 1016 (1025)
T ss_pred HhhhhhhccCccceEEEecCC
Confidence 445577999999999999764
No 214
>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]
Probab=79.90 E-value=0.29 Score=46.79 Aligned_cols=43 Identities=33% Similarity=0.455 Sum_probs=29.8
Q ss_pred HHHHHhccCCccCeeccCCCCcEEEEEec------CCCEEEEEEecccc
Q 045304 486 ELCRATDRFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHC 528 (540)
Q Consensus 486 ~l~~at~~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~ 528 (540)
|+......|.-..++-+|.||.||+|.+. |.+.|-||.++...
T Consensus 278 ~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~A 326 (563)
T KOG1024|consen 278 ELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHA 326 (563)
T ss_pred hhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcc
Confidence 33333445666778899999999999663 44667788775443
No 215
>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]
Probab=79.49 E-value=2.1 Score=36.80 Aligned_cols=30 Identities=30% Similarity=0.368 Sum_probs=25.0
Q ss_pred CeeccCCCCcEEEEEecCCCEEEEEEecccc
Q 045304 498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHC 528 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~ 528 (540)
..||+|.+|.||.|.+. |..||+|+=..++
T Consensus 28 ~~L~KG~~s~Vyl~~~~-~~~~a~Kvrr~ds 57 (201)
T COG2112 28 KELAKGTTSVVYLGEWR-GGEVALKVRRRDS 57 (201)
T ss_pred hhhhcccccEEEEeecc-CceEEEEEecCCc
Confidence 56999999999999997 5689999876544
No 216
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=79.41 E-value=2 Score=32.78 Aligned_cols=17 Identities=6% Similarity=0.247 Sum_probs=9.4
Q ss_pred cccceecccchhhHHHH
Q 045304 433 WKNALLLGTVLPLSTIF 449 (540)
Q Consensus 433 ~~~~~~i~~~i~~~~~~ 449 (540)
.....++++++++++++
T Consensus 63 ls~gaiagi~vg~~~~v 79 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVV 79 (96)
T ss_pred cccccEEEEEeehhhHH
Confidence 34455666666655444
No 217
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.21 E-value=1.4 Score=24.17 Aligned_cols=18 Identities=44% Similarity=0.720 Sum_probs=12.8
Q ss_pred CCCCEeeCCCCCCCCCCc
Q 045304 258 ASLRTLSLGSNELTSIPL 275 (540)
Q Consensus 258 ~~L~~L~l~~n~l~~ip~ 275 (540)
++|+.|++++|+++.+|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 457777777777777765
No 218
>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]
Probab=79.10 E-value=1.6 Score=42.31 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=25.9
Q ss_pred CeeccCCCCcEEEEEecC-CCEEEEEEecccc
Q 045304 498 NLIGRGGFGSVYKARIQD-GMEVAVKVFHLHC 528 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~ 528 (540)
..+|.|..|+||.+.+.+ +...|+|++....
T Consensus 83 k~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~ 114 (459)
T KOG0610|consen 83 KRLGCGDIGTVYLVELRGTNCLFAMKVMDKES 114 (459)
T ss_pred HHcCCCCceeEEEEEecCCCceEEEEEecHHH
Confidence 459999999999999965 3789999996544
No 219
>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]
Probab=78.74 E-value=2.2 Score=39.07 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=29.0
Q ss_pred cHHHHHHHhccCCccCeeccCCCCcEEEEEecC-CCEEEEEEecc
Q 045304 483 SYLELCRATDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHL 526 (540)
Q Consensus 483 ~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~ 526 (540)
...||+.. ..+|.|..|.|+|.++.. |..+|||.+..
T Consensus 90 dindl~~l-------~dlGsGtcG~V~k~~~rs~~~iiAVK~M~r 127 (391)
T KOG0983|consen 90 DINDLENL-------GDLGSGTCGQVWKMRFRSTGHIIAVKQMRR 127 (391)
T ss_pred ChHHhhhH-------HhhcCCCccceEEEEEcccceEEEEEeecc
Confidence 34566554 339999999999999854 78999999964
No 220
>PHA03210 serine/threonine kinase US3; Provisional
Probab=78.57 E-value=0.65 Score=48.10 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=20.1
Q ss_pred hccCCccCeeccCCCCcEEEEEec
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ 514 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~ 514 (540)
.+.|.-...||+|+||.||++...
T Consensus 147 ~~~Y~ii~~LG~G~fG~Vyl~~~~ 170 (501)
T PHA03210 147 LAHFRVIDDLPAGAFGKIFICALR 170 (501)
T ss_pred hhccEEEeEecCCCCcceEEEEEe
Confidence 456777789999999999998764
No 221
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=78.43 E-value=2.7 Score=34.62 Aligned_cols=17 Identities=12% Similarity=0.376 Sum_probs=10.3
Q ss_pred ceecccchhhHHHHHHH
Q 045304 436 ALLLGTVLPLSTIFMIV 452 (540)
Q Consensus 436 ~~~i~~~i~~~~~~~~~ 452 (540)
.+++|+++++.++++++
T Consensus 49 nIVIGvVVGVGg~ill~ 65 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLG 65 (154)
T ss_pred cEEEEEEecccHHHHHH
Confidence 46777777765544433
No 222
>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]
Probab=78.22 E-value=1.3 Score=47.12 Aligned_cols=45 Identities=31% Similarity=0.479 Sum_probs=34.3
Q ss_pred HHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304 484 YLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC 528 (540)
Q Consensus 484 ~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~ 528 (540)
++.+...++-|--..+||.|.+|.|||++= .+|+.+|||.+....
T Consensus 11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~ 56 (953)
T KOG0587|consen 11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTE 56 (953)
T ss_pred hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCc
Confidence 344444555666678899999999999964 679999999996544
No 223
>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]
Probab=77.20 E-value=0.96 Score=41.13 Aligned_cols=31 Identities=32% Similarity=0.531 Sum_probs=26.2
Q ss_pred CccCeeccCCCCcEEEEEe-cCCCEEEEEEec
Q 045304 495 SENNLIGRGGFGSVYKARI-QDGMEVAVKVFH 525 (540)
Q Consensus 495 ~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~ 525 (540)
.+++-||-|.||+||..+= .||+.||.|++-
T Consensus 56 ~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~p 87 (449)
T KOG0664|consen 56 QPDRPIGYGAFGVVWSVTDPRSGKRVALKKMP 87 (449)
T ss_pred CCCCcccccceeEEEeccCCCCccchhHhhcc
Confidence 3557799999999998876 479999999984
No 224
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=76.92 E-value=1.2 Score=44.67 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=29.1
Q ss_pred hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
.++|.=..+||+|+|.+||+|+= ..+...|||++..
T Consensus 72 ~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K 108 (604)
T KOG0592|consen 72 PNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDK 108 (604)
T ss_pred hhhcchhheeccccceeEEEeeecCCCceeeHhhhhH
Confidence 34555567899999999999975 5688999999953
No 225
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=75.73 E-value=1.1 Score=32.32 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=14.5
Q ss_pred ccccHHHHHHHhccCCcc
Q 045304 480 RRFSYLELCRATDRFSEN 497 (540)
Q Consensus 480 ~~~~~~~l~~at~~f~~~ 497 (540)
...||+|..+|...|..|
T Consensus 55 DP~TYEDP~qAV~eFAkE 72 (75)
T PF14575_consen 55 DPHTYEDPNQAVREFAKE 72 (75)
T ss_dssp -GGGSSSHHHHHHHCSSB
T ss_pred CcccccCHHHHHHHHHhh
Confidence 457899999999999865
No 226
>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=75.30 E-value=0.82 Score=45.97 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=33.4
Q ss_pred CeeccCCCCcEEEEEecCCCEEEEEEecccc--CCcchhhhhhcC
Q 045304 498 NLIGRGGFGSVYKARIQDGMEVAVKVFHLHC--SGAFKSFDVECN 540 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~--~~~~~~F~~E~~ 540 (540)
..||+||...|||+.-.|.+.+|.|+..... .+....|..||+
T Consensus 367 k~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~ 411 (677)
T KOG0596|consen 367 KQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIA 411 (677)
T ss_pred HhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHH
Confidence 4599999999999999988999999885322 333456888873
No 227
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=74.83 E-value=1.2 Score=35.44 Aligned_cols=18 Identities=6% Similarity=0.279 Sum_probs=8.2
Q ss_pred ceecccchhhHHHHHHHH
Q 045304 436 ALLLGTVLPLSTIFMIVV 453 (540)
Q Consensus 436 ~~~i~~~i~~~~~~~~~~ 453 (540)
..++++++++++.+++++
T Consensus 64 ~~i~~Ii~gv~aGvIg~I 81 (122)
T PF01102_consen 64 PAIIGIIFGVMAGVIGII 81 (122)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cceeehhHHHHHHHHHHH
Confidence 344555555544443333
No 228
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=74.78 E-value=0.75 Score=50.30 Aligned_cols=42 Identities=31% Similarity=0.425 Sum_probs=33.5
Q ss_pred HHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 485 LELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
.+++--.++|.--.+||+|+||.|...+.. .+++.|.|+|..
T Consensus 68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK 110 (1317)
T KOG0612|consen 68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNK 110 (1317)
T ss_pred HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhH
Confidence 344444567888899999999999999884 467889999965
No 229
>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]
Probab=73.02 E-value=1.5 Score=45.15 Aligned_cols=32 Identities=44% Similarity=0.615 Sum_probs=26.3
Q ss_pred ccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 496 ENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
--..+|+|.||.|||++= ..|...|||.++..
T Consensus 19 llqrvgsgTygdvyKaRd~~s~elaavkvVkLe 51 (829)
T KOG0576|consen 19 LLQRVGSGTYGDVYKARDKRSGELAAVKVVKLE 51 (829)
T ss_pred heeeecCCcccchhhhcccccCchhhheeeecc
Confidence 346799999999999974 56889999988644
No 230
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.76 E-value=3.1 Score=22.94 Aligned_cols=14 Identities=57% Similarity=0.596 Sum_probs=7.3
Q ss_pred CCCCEEeccCcccc
Q 045304 10 RNLELLVLSHNKLV 23 (540)
Q Consensus 10 ~~L~~L~L~~n~l~ 23 (540)
++|+.|+|++|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 231
>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A.
Probab=70.42 E-value=4 Score=38.36 Aligned_cols=30 Identities=43% Similarity=0.764 Sum_probs=26.1
Q ss_pred ccCeeccCCCCcEEEEEecC-CCEEEEEEec
Q 045304 496 ENNLIGRGGFGSVYKARIQD-GMEVAVKVFH 525 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~ 525 (540)
....||.|+++.||.++-.+ |+..|||...
T Consensus 16 ~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~ 46 (288)
T PF14531_consen 16 RGRIIGKGGFSIVFEVTDVETGEEFAVKVFL 46 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTTTEEEEEEEEE
T ss_pred EccccccCCceEEEEEEEccCCceEEEEEEe
Confidence 44789999999999999865 8999999984
No 232
>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]
Probab=64.62 E-value=5.1 Score=40.97 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=35.4
Q ss_pred HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC--cchhhhhhc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
.+.++.-...||+|.|++|..|+-. .|..||||.++..... ..+.+.+|+
T Consensus 54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev 106 (596)
T KOG0586|consen 54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREV 106 (596)
T ss_pred cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHH
Confidence 3455666778999999999999763 4889999998654422 223355554
No 233
>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]
Probab=62.29 E-value=4.5 Score=37.57 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=27.1
Q ss_pred CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
|.--..+|.|+||.|-..+. .+|...|.|+|..+
T Consensus 46 fe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~ 80 (355)
T KOG0616|consen 46 FERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQ 80 (355)
T ss_pred hhheeeeccCccceEEEEEEccCCceeehhhcCHH
Confidence 44446799999999998887 45788999999644
No 234
>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed
Probab=60.09 E-value=12 Score=34.22 Aligned_cols=30 Identities=13% Similarity=0.414 Sum_probs=25.1
Q ss_pred ccCeec-cCCCCcEEEEEecCCCEEEEEEecc
Q 045304 496 ENNLIG-RGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 496 ~~~~ig-~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
...+|| .||.|+||+.... |..+|||+...
T Consensus 35 ~~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r 65 (239)
T PRK01723 35 QARVVGSAKGRGTTWFVQTP-GVNWVLRHYRR 65 (239)
T ss_pred cCceeecCCCCccEEEEEeC-CceEEEEEeeE
Confidence 347898 9999999999996 67899998853
No 235
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.03 E-value=8 Score=21.64 Aligned_cols=14 Identities=57% Similarity=0.755 Sum_probs=9.1
Q ss_pred CCCCEEECCCCcCc
Q 045304 353 ISLKSLNLSNNNLS 366 (540)
Q Consensus 353 ~~L~~L~l~~n~l~ 366 (540)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35667777777665
No 236
>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]
Probab=59.50 E-value=0.43 Score=42.87 Aligned_cols=27 Identities=48% Similarity=0.806 Sum_probs=22.9
Q ss_pred CeeccCCCCcEEEEEecC-CCEEEEEEe
Q 045304 498 NLIGRGGFGSVYKARIQD-GMEVAVKVF 524 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~-g~~vAVK~l 524 (540)
+.||+|.||.||||.-.+ |+.||+|+.
T Consensus 23 ~kigqGtfgeVFkAr~~n~~kkvalkkv 50 (376)
T KOG0669|consen 23 AKIGQGTFGEVFKARSKNTGKKVALKKV 50 (376)
T ss_pred HhcCCchHHHHHHHhhcCccchhHHHHH
Confidence 569999999999998854 678999876
No 237
>PF15102 TMEM154: TMEM154 protein family
Probab=57.07 E-value=12 Score=30.81 Aligned_cols=7 Identities=29% Similarity=0.126 Sum_probs=2.9
Q ss_pred ccHHHHH
Q 045304 482 FSYLELC 488 (540)
Q Consensus 482 ~~~~~l~ 488 (540)
+..+||.
T Consensus 125 iEmeeld 131 (146)
T PF15102_consen 125 IEMEELD 131 (146)
T ss_pred hhHHHHH
Confidence 3344443
No 238
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.73 E-value=5 Score=39.04 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=30.8
Q ss_pred HHHHHhccCCccCeeccCCCCcEEEEEecC-CCEEEEEEecccc
Q 045304 486 ELCRATDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHC 528 (540)
Q Consensus 486 ~l~~at~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~ 528 (540)
+..+|| +|+=-.+||+|+||.|..|.-.+ ....|||.|+.+.
T Consensus 344 d~i~~t-DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDV 386 (683)
T KOG0696|consen 344 DRIKAT-DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDV 386 (683)
T ss_pred cceeec-ccceEEEeccCccceeeeecccCcchhhhhhhhccce
Confidence 333444 46666889999999999998743 3578999996543
No 239
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=55.49 E-value=5.2 Score=31.62 Aligned_cols=6 Identities=17% Similarity=0.440 Sum_probs=0.0
Q ss_pred hheeee
Q 045304 456 LILRYR 461 (540)
Q Consensus 456 ~~~~~~ 461 (540)
+++|+|
T Consensus 98 ~lv~rr 103 (129)
T PF12191_consen 98 FLVWRR 103 (129)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 333333
No 240
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=54.50 E-value=5.4 Score=44.79 Aligned_cols=35 Identities=43% Similarity=0.663 Sum_probs=28.2
Q ss_pred hccCCccCeeccCCCCcEEEEE-ecCCCEEEEEEec
Q 045304 491 TDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFH 525 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~ 525 (540)
|-.....+.||.|.||.||-|+ +..|...|||-+.
T Consensus 1234 ~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~ 1269 (1509)
T KOG4645|consen 1234 TFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIK 1269 (1509)
T ss_pred eeeeccccccCCcceeeeEEeecCCccchhhhhhhh
Confidence 3344567889999999999987 4668899999774
No 241
>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2
Probab=52.49 E-value=15 Score=32.49 Aligned_cols=32 Identities=38% Similarity=0.640 Sum_probs=27.5
Q ss_pred ccCCccCeeccCCC-CcEEEEEecCCCEEEEEEe
Q 045304 492 DRFSENNLIGRGGF-GSVYKARIQDGMEVAVKVF 524 (540)
Q Consensus 492 ~~f~~~~~ig~G~~-G~Vykg~l~~g~~vAVK~l 524 (540)
.+|.--+.+|.|.- |.|||.++ +|+..|+|..
T Consensus 37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf 69 (207)
T PF13095_consen 37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLF 69 (207)
T ss_pred CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEe
Confidence 55666678999999 99999999 5889999993
No 242
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.40 E-value=63 Score=32.48 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCeEEcCCCCCccccCc---cCCCCCCCCEeeCCCCCCCC-----CCccccCCCCCcEEECCCCc
Q 045304 236 LYELDLGSNKFSRSIPA---CFSNLASLRTLSLGSNELTS-----IPLTFWNLKDILYLNFSSNF 292 (540)
Q Consensus 236 L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~-----ip~~~~~l~~L~~L~L~~n~ 292 (540)
+..+.++.|........ ....-+.+..|++++|.... +|.......+++....+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 45556666655422211 12334567777777776654 34444444444444444443
No 243
>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]
Probab=51.36 E-value=14 Score=37.94 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=26.9
Q ss_pred cCCccCeeccCCCCcEEEEEecCC-CEEEEEEecc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQDG-MEVAVKVFHL 526 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~g-~~vAVK~l~~ 526 (540)
+|+.-..+|+|+||.|..++.... ..|+||.+..
T Consensus 562 ~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~K 596 (772)
T KOG1152|consen 562 DYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFK 596 (772)
T ss_pred cceeeeeccccccceEEEeeecccceEEEeeehhh
Confidence 456667899999999999998554 4688888754
No 244
>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]
Probab=51.34 E-value=3.9 Score=41.07 Aligned_cols=39 Identities=38% Similarity=0.669 Sum_probs=31.5
Q ss_pred HHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 488 CRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 488 ~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
.+-.++|.....+|+||||+|+.+... |+...|||||..
T Consensus 45 sr~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritl 84 (516)
T KOG1033|consen 45 SREANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITL 84 (516)
T ss_pred hhhhccccccccccccCccccCCccccccchhhHHHHhcc
Confidence 344578999999999999999999874 445789999854
No 245
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=50.87 E-value=17 Score=33.78 Aligned_cols=27 Identities=41% Similarity=0.421 Sum_probs=24.9
Q ss_pred CeeccCCCCcEEEEEecCCCEEEEEEe
Q 045304 498 NLIGRGGFGSVYKARIQDGMEVAVKVF 524 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~~g~~vAVK~l 524 (540)
+.||.|.=+.||.|.-++|..+|||-=
T Consensus 97 ~~IGvGKEsdVY~~~~~~g~~~~vKfH 123 (304)
T COG0478 97 TKIGVGKESDVYVAIDPKGRKVAVKFH 123 (304)
T ss_pred cccccCccceEEEEECCCCCEEEEEEe
Confidence 679999999999999999999999954
No 246
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=46.47 E-value=13 Score=32.56 Aligned_cols=21 Identities=14% Similarity=0.464 Sum_probs=10.3
Q ss_pred cceecccchhhHHHHHHHHHh
Q 045304 435 NALLLGTVLPLSTIFMIVVIL 455 (540)
Q Consensus 435 ~~~~i~~~i~~~~~~~~~~~~ 455 (540)
..++++++.|++++++++++.
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~ 57 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIV 57 (221)
T ss_pred eeeeeeeecchhhhHHHHHHH
Confidence 344555555555444444433
No 247
>PF09919 DUF2149: Uncharacterized conserved protein (DUF2149); InterPro: IPR018676 This family of conserved hypothetical proteins has no known function.
Probab=45.89 E-value=16 Score=27.67 Aligned_cols=20 Identities=35% Similarity=0.777 Sum_probs=15.9
Q ss_pred eccC-CCCcEEEEEecCCCEEEE
Q 045304 500 IGRG-GFGSVYKARIQDGMEVAV 521 (540)
Q Consensus 500 ig~G-~~G~Vykg~l~~g~~vAV 521 (540)
=|+| .-|+||| +++|+.|-|
T Consensus 70 ~G~G~~~G~aYr--l~~Gk~I~V 90 (92)
T PF09919_consen 70 SGSGERLGTAYR--LKDGKLIYV 90 (92)
T ss_pred CCCCeECeEEEE--cCCceEEEe
Confidence 3555 5799999 999998866
No 248
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=45.85 E-value=8.6 Score=36.25 Aligned_cols=37 Identities=27% Similarity=0.486 Sum_probs=28.7
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC 528 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~ 528 (540)
++|+--.++|+|.||+|-..+= ..|...|+|.|+...
T Consensus 168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKev 205 (516)
T KOG0690|consen 168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEV 205 (516)
T ss_pred chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhh
Confidence 4566668899999999976654 468899999996543
No 249
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=44.74 E-value=19 Score=35.91 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=17.3
Q ss_pred CccccceecccchhhHHHHHHHHHhhhee
Q 045304 431 TSWKNALLLGTVLPLSTIFMIVVILLILR 459 (540)
Q Consensus 431 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 459 (540)
+..+.++|++|.|++++++..++-|+.||
T Consensus 362 s~LstgaIaGIsvavvvvVgglvGfLcWw 390 (397)
T PF03302_consen 362 SGLSTGAIAGISVAVVVVVGGLVGFLCWW 390 (397)
T ss_pred ccccccceeeeeehhHHHHHHHHHHHhhh
Confidence 44556777777777766665555333333
No 250
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.27 E-value=8.3 Score=36.36 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=29.2
Q ss_pred ccCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~ 527 (540)
++|+--.+||+|+|.+|..+.+.. .+..|+|+++..
T Consensus 250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkke 286 (593)
T KOG0695|consen 250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKE 286 (593)
T ss_pred ccceeeeeecCcchhhhhheehcccceeeehhhHHHH
Confidence 567777899999999999998843 578899988643
No 251
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=39.33 E-value=21 Score=32.96 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=32.7
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.|+-...+|+|.||.+-.++-. ..+.||+|-..... -..++|.+|-
T Consensus 25 ~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~-tt~~dF~rEf 71 (378)
T KOG1345|consen 25 VYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ-TTQADFVREF 71 (378)
T ss_pred hhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch-hhHHHHHHHh
Confidence 4556678999999999999885 35678888875322 2246787773
No 252
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.13 E-value=18 Score=44.32 Aligned_cols=32 Identities=19% Similarity=0.227 Sum_probs=22.2
Q ss_pred eCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304 335 FVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 335 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777777555566667777777777777665
No 253
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.48 E-value=18 Score=36.91 Aligned_cols=13 Identities=38% Similarity=0.401 Sum_probs=6.4
Q ss_pred CCCeeeeeCcccc
Q 045304 211 KLQGLSLADNKLE 223 (540)
Q Consensus 211 ~L~~L~l~~n~~~ 223 (540)
.|++|.+.+|.+.
T Consensus 271 ~Leel~l~GNPlc 283 (585)
T KOG3763|consen 271 PLEELVLEGNPLC 283 (585)
T ss_pred CHHHeeecCCccc
Confidence 3445555555443
No 254
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=36.89 E-value=24 Score=19.13 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=5.9
Q ss_pred CCCCEEEccCC
Q 045304 59 PNLEVLRMRSN 69 (540)
Q Consensus 59 ~~L~~L~L~~n 69 (540)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 45555555555
No 255
>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.48 E-value=15 Score=37.16 Aligned_cols=30 Identities=40% Similarity=0.527 Sum_probs=23.8
Q ss_pred cCeeccCCCCcEEEE--EecCCCEEEEEEeccc
Q 045304 497 NNLIGRGGFGSVYKA--RIQDGMEVAVKVFHLH 527 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg--~l~~g~~vAVK~l~~~ 527 (540)
+.-||+|.|.+|-.| ++ .|..||||++...
T Consensus 23 ekTlG~GHFAVVKLArHVF-TGekVAVKviDKT 54 (864)
T KOG4717|consen 23 EKTLGRGHFAVVKLARHVF-TGEKVAVKVIDKT 54 (864)
T ss_pred hhhhcCCceehhhhhhhhc-ccceeEEEEeccc
Confidence 355999999998766 45 5899999999654
No 256
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.58 E-value=17 Score=37.06 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=34.5
Q ss_pred CCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCC--CCCCeeeccCCcccc
Q 045304 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL--TNLIIIYLGGNKLNG 200 (540)
Q Consensus 134 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~n~l~~ 200 (540)
+.+.+..+.|++|++...-....+....++|+.|+|++|...-....++.++ ..|++|.+.+|.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 3455555666666554433323344444667777777662211111223222 346777777777654
No 257
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=34.93 E-value=29 Score=35.26 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=22.9
Q ss_pred eccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 500 IGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 500 ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
.|+|-|++|.+|.= .-|+.||||.+..
T Consensus 440 ~GkGvFs~Vvra~D~~r~~~vAiKIIRn 467 (752)
T KOG0670|consen 440 TGKGVFSTVVRARDQARGQEVAIKIIRN 467 (752)
T ss_pred cccceeeeeeeccccCCCCeeEEEEeec
Confidence 58999999999975 4588999999964
No 258
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=31.60 E-value=1.4e+02 Score=30.12 Aligned_cols=107 Identities=18% Similarity=0.097 Sum_probs=55.5
Q ss_pred CCcEEECCCCcccCCCcccc--ccccCcceEEcccceeeec-Cccc----c----ccCCCCcEEeCcCccCcccCC---c
Q 045304 282 DILYLNFSSNFLTGPLPLEI--ENLKVLVGIDFSVNNFSGV-IPTT----I----GSLKGLQYLFVGYNRLQGSIP---Y 347 (540)
Q Consensus 282 ~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~-~~~~----~----~~l~~L~~L~l~~n~l~~~~~---~ 347 (540)
.++++....|++.|...... ..-+..+.+++..-.-... ++.. . ....-+..+.++.|.+..... .
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 47777777777766544322 2233445555433221000 0000 0 112335667777776653221 2
Q ss_pred ccCCCCCCCEEECCCCcCcc----ccCccccCCCCCCeEEcccCc
Q 045304 348 SIGDLISLKSLNLSNNNLSG----TIPVSLEKLSYLEDLNLSFNK 388 (540)
Q Consensus 348 ~~~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~L~~l~l~~n~ 388 (540)
.+..-+.+..|++++|.... .+|..+..-..+..+..+.|.
T Consensus 435 ~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred hhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 23445678899999997652 244555555556666666554
No 259
>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=31.56 E-value=12 Score=33.46 Aligned_cols=31 Identities=19% Similarity=0.457 Sum_probs=25.9
Q ss_pred CeeccCCCCcEEEEE-ecCCCEEEEEEecccc
Q 045304 498 NLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHC 528 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~ 528 (540)
+.+|+|.|..|+.|. +.+.+.++||.|++..
T Consensus 44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk 75 (338)
T KOG0668|consen 44 RKVGRGKYSEVFEGINITNNEKCVIKILKPVK 75 (338)
T ss_pred HHHcCccHhhHhcccccCCCceEEEeeechHH
Confidence 569999999999997 4567889999997654
No 260
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=30.14 E-value=15 Score=34.70 Aligned_cols=9 Identities=67% Similarity=1.217 Sum_probs=3.9
Q ss_pred hheeeeccC
Q 045304 456 LILRYRKRV 464 (540)
Q Consensus 456 ~~~~~~~~~ 464 (540)
+++++||++
T Consensus 277 LILRYRRKK 285 (299)
T PF02009_consen 277 LILRYRRKK 285 (299)
T ss_pred HHHHHHHHh
Confidence 334444433
No 261
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=29.44 E-value=43 Score=29.39 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=10.7
Q ss_pred ecccchhhHHHHHHHHH-hhheeeec
Q 045304 438 LLGTVLPLSTIFMIVVI-LLILRYRK 462 (540)
Q Consensus 438 ~i~~~i~~~~~~~~~~~-~~~~~~~~ 462 (540)
.++++++++++++++++ +++++.|+
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R~ 184 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNRK 184 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeecc
Confidence 34445555544444333 33333333
No 262
>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]
Probab=27.41 E-value=21 Score=34.54 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=25.4
Q ss_pred CCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 494 FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
|---..+|+|.||.|-+..=. .+..||||.++..
T Consensus 91 y~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V 125 (415)
T KOG0671|consen 91 YEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV 125 (415)
T ss_pred eehhhhhcCCcccceEEEeecCCCceehHHHHHHH
Confidence 333456999999999887653 3689999998643
No 263
>PTZ00046 rifin; Provisional
Probab=26.76 E-value=28 Score=33.57 Aligned_cols=11 Identities=64% Similarity=1.093 Sum_probs=5.6
Q ss_pred hhheeeeccCC
Q 045304 455 LLILRYRKRVK 465 (540)
Q Consensus 455 ~~~~~~~~~~~ 465 (540)
.++.|+||+++
T Consensus 335 YLILRYRRKKK 345 (358)
T PTZ00046 335 YLILRYRRKKK 345 (358)
T ss_pred HHHHHhhhcch
Confidence 34455555554
No 264
>PRK14051 negative regulator GrlR; Provisional
Probab=26.56 E-value=75 Score=24.38 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=20.0
Q ss_pred cCeeccCCCCcEEEEEecCCCEEEEE
Q 045304 497 NNLIGRGGFGSVYKARIQDGMEVAVK 522 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~~g~~vAVK 522 (540)
.+.|--|.++.||.|.+.+...+.+|
T Consensus 28 ~nkInGGD~~~~YqG~isEd~~iilh 53 (123)
T PRK14051 28 GNMITGGDIASVYQGVLSEDEDIILH 53 (123)
T ss_pred CCEecCCccceEEeccccccceeEEE
Confidence 47788899999999999776544444
No 265
>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]
Probab=26.19 E-value=24 Score=34.96 Aligned_cols=41 Identities=27% Similarity=0.486 Sum_probs=28.7
Q ss_pred HHHHhccCCccCeeccCCCCcEEEEEec-------C---------CCEEEEEEecccc
Q 045304 487 LCRATDRFSENNLIGRGGFGSVYKARIQ-------D---------GMEVAVKVFHLHC 528 (540)
Q Consensus 487 l~~at~~f~~~~~ig~G~~G~Vykg~l~-------~---------g~~vAVK~l~~~~ 528 (540)
+.++-.+|++ .-||.|....||+|.+. + -+.+|||.++...
T Consensus 185 ~~eiF~efn~-~PIGsG~IAQVY~atl~~a~lekd~~~~~~~~~~tq~~AiKv~Hp~V 241 (565)
T KOG1236|consen 185 IEEIFSEFNR-EPIGSGCIAQVYRATLKTAYLEKDSGKEYVQKLGTQSCAIKVLHPNV 241 (565)
T ss_pred HHHHHHhcCC-cccccchhhhhhhhhhhHHHhhcccchhhhcCCccceeeeeccCccH
Confidence 3344444554 35899999999999861 1 2579999998654
No 266
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=26.01 E-value=29 Score=33.32 Aligned_cols=11 Identities=64% Similarity=1.093 Sum_probs=5.6
Q ss_pred hhheeeeccCC
Q 045304 455 LLILRYRKRVK 465 (540)
Q Consensus 455 ~~~~~~~~~~~ 465 (540)
.++.|+||+++
T Consensus 330 YLILRYRRKKK 340 (353)
T TIGR01477 330 YLILRYRRKKK 340 (353)
T ss_pred HHHHHhhhcch
Confidence 34455565554
No 267
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=25.95 E-value=59 Score=31.67 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=7.1
Q ss_pred ccCCCCcEEEE
Q 045304 501 GRGGFGSVYKA 511 (540)
Q Consensus 501 g~G~~G~Vykg 511 (540)
++||...||+.
T Consensus 425 ~eg~~s~~~~~ 435 (436)
T PTZ00208 425 AEGGVSSVKVV 435 (436)
T ss_pred ccCCCCceeec
Confidence 35777777753
No 268
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=25.70 E-value=47 Score=31.77 Aligned_cols=8 Identities=0% Similarity=-0.006 Sum_probs=3.3
Q ss_pred cccchhhH
Q 045304 439 LGTVLPLS 446 (540)
Q Consensus 439 i~~~i~~~ 446 (540)
+.+++|++
T Consensus 273 vPIaVG~~ 280 (306)
T PF01299_consen 273 VPIAVGAA 280 (306)
T ss_pred HHHHHHHH
Confidence 33344444
No 269
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=25.59 E-value=29 Score=27.81 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=10.1
Q ss_pred cceecccchhhHHHHHHHHHhhh
Q 045304 435 NALLLGTVLPLSTIFMIVVILLI 457 (540)
Q Consensus 435 ~~~~i~~~i~~~~~~~~~~~~~~ 457 (540)
.++++|++++++ .+++++.+++
T Consensus 67 ~~Ii~gv~aGvI-g~Illi~y~i 88 (122)
T PF01102_consen 67 IGIIFGVMAGVI-GIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHH
T ss_pred eehhHHHHHHHH-HHHHHHHHHH
Confidence 344455444444 4444554443
No 270
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=24.59 E-value=35 Score=38.29 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=33.1
Q ss_pred cCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc-CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
++.-..-+|+++|=+|.||+-+.|. |+||++-... .-..++|..++
T Consensus 24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL 70 (1431)
T KOG1240|consen 24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRL 70 (1431)
T ss_pred ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHH
Confidence 3444567999999999999999887 9999984332 33445565543
No 271
>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]
Probab=24.26 E-value=81 Score=29.07 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=22.3
Q ss_pred eccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 500 IGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 500 ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
|..|.-..||+|.-.++..||||+....
T Consensus 56 istGKEA~Vy~a~~~~~~~~avKiyr~~ 83 (268)
T COG1718 56 ISTGKEANVYLAETGDGRYVAVKIYRTS 83 (268)
T ss_pred ecCCcceEEEeeccCCCceEEEEEEehh
Confidence 4455566899999988999999998543
No 272
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=24.18 E-value=41 Score=31.00 Aligned_cols=52 Identities=17% Similarity=0.322 Sum_probs=33.9
Q ss_pred ccccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc--CCcchhhhhhc
Q 045304 480 RRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 480 ~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
..+++.++--.|. |.+...|..|||+++ |.-|++|.|.... ..-.++|..|.
T Consensus 185 ~gid~~~lnl~tk-------l~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneef 238 (448)
T KOG0195|consen 185 TGIDVSSLNLITK-------LAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEF 238 (448)
T ss_pred cCcchhhhhhhhh-------hccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhC
Confidence 3445555544443 778888999999997 6677788885432 23345676664
No 273
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.88 E-value=59 Score=40.36 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=25.5
Q ss_pred eccCcccccCCCccccCCCCCCEEEcccCcCc
Q 045304 16 VLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLS 47 (540)
Q Consensus 16 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 47 (540)
||++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57888888666677888888888888888764
No 274
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=21.75 E-value=37 Score=27.48 Aligned_cols=7 Identities=0% Similarity=0.415 Sum_probs=2.6
Q ss_pred hhhHHHH
Q 045304 443 LPLSTIF 449 (540)
Q Consensus 443 i~~~~~~ 449 (540)
+++++.+
T Consensus 36 iaIvVli 42 (189)
T PF05568_consen 36 IAIVVLI 42 (189)
T ss_pred HHHHHHH
Confidence 3333333
No 275
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=21.14 E-value=69 Score=23.23 Aligned_cols=13 Identities=31% Similarity=0.404 Sum_probs=5.5
Q ss_pred ceecccchhhHHH
Q 045304 436 ALLLGTVLPLSTI 448 (540)
Q Consensus 436 ~~~i~~~i~~~~~ 448 (540)
...++++++-+++
T Consensus 34 g~LaGiV~~D~vl 46 (79)
T PF07213_consen 34 GLLAGIVAADAVL 46 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 276
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=21.00 E-value=79 Score=33.03 Aligned_cols=25 Identities=24% Similarity=0.615 Sum_probs=10.9
Q ss_pred eecccchhhHHHHHHHHHhhheeee
Q 045304 437 LLLGTVLPLSTIFMIVVILLILRYR 461 (540)
Q Consensus 437 ~~i~~~i~~~~~~~~~~~~~~~~~~ 461 (540)
+|+|+++++++++++++++++..+|
T Consensus 271 II~gVlvPv~vV~~Iiiil~~~LCR 295 (684)
T PF12877_consen 271 IIAGVLVPVLVVLLIIIILYWKLCR 295 (684)
T ss_pred EEehHhHHHHHHHHHHHHHHHHHhc
Confidence 3455444444444444444333333
No 277
>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=20.71 E-value=62 Score=34.06 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=25.2
Q ss_pred CeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
.-+|.|+-|.|-.|+- ..|+.+|||.+...
T Consensus 18 kTLG~Gstg~vrlakh~~TGqlaaiKii~k~ 48 (786)
T KOG0588|consen 18 KTLGKGSTGCVRLAKHAETGQLAAIKIIPKR 48 (786)
T ss_pred ccccCCCCceehhhhcccccceeEEEeeccc
Confidence 4499999999999976 56999999999543
No 278
>PF08277 PAN_3: PAN-like domain; InterPro: IPR006583 PAN domains have significant functional versatility fulfilling diverse biological functions by mediating protein-protein or protein-carbohydrate interactions []. These domains contain a hair-pin loop like structure, similar to knottins, but the pattern of disulphide bonds differs The PAN-3 or CW is a domain associated with a number of Caenorhabditis elegans hypothetical proteins.
Probab=20.61 E-value=77 Score=22.22 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=12.1
Q ss_pred CcEEEEEecCCCEEEEEE
Q 045304 506 GSVYKARIQDGMEVAVKV 523 (540)
Q Consensus 506 G~Vykg~l~~g~~vAVK~ 523 (540)
..|-|..-.+|..||+|+
T Consensus 54 ~~v~~~~~~~~~~VA~K~ 71 (71)
T PF08277_consen 54 STVQKTDSSSGNKVAFKI 71 (71)
T ss_pred EEEEEeecCCCeEEEEEC
Confidence 345555556788889885
Done!