Query 045304
Match_columns 540
No_of_seqs 538 out of 4552
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 21:03:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045304.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045304hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 5.2E-56 1.8E-60 479.6 32.8 409 8-427 267-751 (768)
2 3rgz_A Protein brassinosteroid 100.0 3E-52 1E-56 450.3 32.1 398 6-412 219-716 (768)
3 3t6q_A CD180 antigen; protein- 100.0 7.4E-47 2.5E-51 399.3 33.9 410 3-417 50-564 (606)
4 4eco_A Uncharacterized protein 100.0 8.1E-48 2.8E-52 406.4 24.8 349 26-391 198-601 (636)
5 4eco_A Uncharacterized protein 100.0 1.8E-47 6.2E-52 403.7 25.9 389 10-416 81-603 (636)
6 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-46 4.2E-51 410.6 30.9 410 3-417 41-564 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.4E-46 1.8E-50 392.7 33.7 405 2-417 26-562 (606)
8 3t6q_A CD180 antigen; protein- 100.0 1.8E-45 6E-50 388.8 35.1 402 1-413 26-513 (606)
9 2z63_A TOLL-like receptor 4, v 100.0 9.3E-45 3.2E-49 380.7 32.7 405 2-418 22-536 (570)
10 4ecn_A Leucine-rich repeat pro 100.0 8.7E-46 3E-50 396.9 24.9 387 10-414 323-841 (876)
11 4ecn_A Leucine-rich repeat pro 100.0 2.9E-45 1E-49 392.9 26.9 350 26-393 440-843 (876)
12 1ziw_A TOLL-like receptor 3; i 100.0 4.8E-44 1.6E-48 382.9 35.1 407 5-418 92-627 (680)
13 3vq2_A TLR4, TOLL-like recepto 100.0 5.3E-44 1.8E-48 377.5 34.3 384 3-396 49-564 (606)
14 1ziw_A TOLL-like receptor 3; i 100.0 6.4E-43 2.2E-47 374.2 36.5 381 5-391 44-518 (680)
15 2z63_A TOLL-like receptor 4, v 100.0 1.5E-43 5.3E-48 371.4 28.4 383 3-396 45-537 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-43 1.5E-47 366.1 25.3 395 1-417 19-514 (549)
17 3v47_A TOLL-like receptor 5B a 100.0 1.8E-42 6.2E-47 352.8 28.5 356 34-396 30-414 (455)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-43 8.9E-48 365.1 22.4 395 1-417 14-485 (520)
19 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-42 8.4E-47 360.5 23.2 377 3-395 43-515 (549)
20 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-41 4.1E-46 371.3 26.0 385 3-395 66-565 (844)
21 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-42 1.2E-46 356.6 19.4 375 3-394 38-485 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 6.6E-40 2.2E-44 348.5 36.1 407 2-417 46-584 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.6E-40 8.8E-45 345.5 30.2 391 2-416 46-513 (562)
24 3v47_A TOLL-like receptor 5B a 100.0 6.1E-40 2.1E-44 334.2 29.5 372 36-418 12-413 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.1E-40 2.8E-44 341.7 30.4 383 8-413 29-486 (562)
26 1o6v_A Internalin A; bacterial 100.0 3.5E-38 1.2E-42 321.5 33.3 345 9-391 45-389 (466)
27 2id5_A Lingo-1, leucine rich r 100.0 1.4E-38 4.9E-43 325.8 27.1 347 36-417 13-360 (477)
28 4g8a_A TOLL-like receptor 4; l 100.0 8E-38 2.7E-42 332.4 32.0 389 3-394 69-584 (635)
29 1jl5_A Outer protein YOPM; leu 100.0 6.2E-38 2.1E-42 316.7 26.7 337 1-395 25-377 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1E-37 3.6E-42 315.3 26.3 339 4-396 36-393 (457)
31 1o6v_A Internalin A; bacterial 100.0 6.2E-37 2.1E-41 312.2 32.2 329 2-367 61-389 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 3.5E-37 1.2E-41 315.5 27.7 347 12-394 13-360 (477)
33 1jl5_A Outer protein YOPM; leu 100.0 2E-36 6.9E-41 305.6 25.5 350 7-414 8-371 (454)
34 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-35 4.6E-40 285.6 21.3 255 162-418 50-309 (313)
35 3o6n_A APL1; leucine-rich repe 100.0 1E-34 3.5E-39 289.2 27.6 311 32-368 43-354 (390)
36 3o6n_A APL1; leucine-rich repe 100.0 6.7E-35 2.3E-39 290.5 26.2 336 57-417 43-378 (390)
37 3bz5_A Internalin-J, INLJ; leu 100.0 9.9E-35 3.4E-39 293.5 27.7 326 19-392 27-370 (457)
38 3oja_B Anopheles plasmodium-re 100.0 8.2E-35 2.8E-39 305.4 26.6 335 33-417 50-384 (597)
39 4fmz_A Internalin; leucine ric 100.0 3.2E-34 1.1E-38 281.0 28.7 306 31-366 41-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 3.8E-34 1.3E-38 280.6 28.7 306 56-390 41-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 1.9E-34 6.5E-39 302.7 27.6 310 8-342 49-358 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 6.7E-34 2.3E-38 273.7 18.6 252 136-392 50-306 (313)
43 1xku_A Decorin; proteoglycan, 100.0 1.8E-32 6.2E-37 266.4 27.1 295 35-364 32-330 (330)
44 2ft3_A Biglycan; proteoglycan, 100.0 2E-32 6.7E-37 266.3 26.9 287 35-364 34-331 (332)
45 2ft3_A Biglycan; proteoglycan, 100.0 6.9E-32 2.3E-36 262.5 27.2 287 60-388 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 4.2E-31 1.4E-35 256.8 29.1 288 10-315 31-329 (330)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-35 5.9E-40 301.9 -3.1 354 10-366 3-411 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 1.2E-35 4.2E-40 303.0 -5.2 357 34-392 3-413 (461)
49 4fcg_A Uncharacterized protein 100.0 1.8E-29 6.1E-34 244.2 18.2 225 162-390 81-314 (328)
50 2z66_A Variable lymphocyte rec 100.0 2.8E-29 9.5E-34 241.3 18.4 281 12-327 9-296 (306)
51 2z66_A Variable lymphocyte rec 100.0 5.2E-29 1.8E-33 239.3 19.9 281 37-353 10-298 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 2.1E-29 7.1E-34 247.1 17.2 276 9-294 30-314 (353)
53 4fcg_A Uncharacterized protein 100.0 5.4E-29 1.8E-33 240.8 19.2 224 137-366 82-314 (328)
54 2z80_A TOLL-like receptor 2, v 100.0 4.4E-29 1.5E-33 244.9 15.9 287 30-346 27-318 (353)
55 3zyi_A Leucine-rich repeat-con 100.0 8.9E-28 3.1E-32 243.6 25.9 231 162-394 75-307 (452)
56 3ogk_B Coronatine-insensitive 100.0 1.3E-31 4.6E-36 282.0 -3.0 381 6-390 69-526 (592)
57 3zyj_A Leucine-rich repeat-con 100.0 2.3E-27 8E-32 239.6 25.9 230 162-393 64-295 (440)
58 1ozn_A Reticulon 4 receptor; N 100.0 2.3E-28 7.9E-33 232.2 17.3 223 139-366 14-238 (285)
59 1ozn_A Reticulon 4 receptor; N 100.0 2.9E-28 9.9E-33 231.6 16.7 254 37-326 14-269 (285)
60 3zyi_A Leucine-rich repeat-con 100.0 3.7E-27 1.3E-31 239.0 25.5 229 136-367 75-304 (452)
61 3zyj_A Leucine-rich repeat-con 100.0 4E-27 1.4E-31 237.9 25.3 229 136-367 64-293 (440)
62 3g06_A SSPH2 (leucine-rich rep 100.0 1.1E-26 3.8E-31 241.4 27.2 265 11-326 41-305 (622)
63 3o53_A Protein LRIM1, AGAP0063 100.0 3.4E-29 1.1E-33 241.6 7.5 257 36-313 12-270 (317)
64 3ogk_B Coronatine-insensitive 100.0 1.6E-30 5.4E-35 273.8 -4.3 382 25-411 64-524 (592)
65 1wwl_A Monocyte differentiatio 99.9 3.8E-29 1.3E-33 240.6 5.3 247 30-293 39-308 (312)
66 1wwl_A Monocyte differentiatio 99.9 4.8E-29 1.6E-33 239.9 5.1 246 134-391 41-310 (312)
67 3o53_A Protein LRIM1, AGAP0063 99.9 8.6E-29 2.9E-33 238.7 5.8 257 61-337 12-270 (317)
68 3g06_A SSPH2 (leucine-rich rep 99.9 5.2E-26 1.8E-30 236.4 26.1 267 34-375 40-306 (622)
69 3oja_A Leucine-rich immune mol 99.9 9.1E-27 3.1E-31 237.4 13.7 234 59-312 34-269 (487)
70 3oja_A Leucine-rich immune mol 99.9 3.7E-27 1.3E-31 240.3 9.8 235 82-336 33-269 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 2.1E-25 7.3E-30 210.7 20.6 209 186-395 28-242 (276)
72 2p1m_B Transport inhibitor res 99.9 3.1E-28 1.1E-32 256.4 -3.8 378 6-389 62-518 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 1.2E-24 4.2E-29 205.5 21.0 207 162-369 28-240 (276)
74 2o6q_A Variable lymphocyte rec 99.9 4E-24 1.4E-28 201.1 22.3 205 187-394 17-222 (270)
75 1p9a_G Platelet glycoprotein I 99.9 1.9E-24 6.6E-29 204.9 20.0 205 182-392 6-210 (290)
76 2p1m_B Transport inhibitor res 99.9 1.5E-27 5.1E-32 251.2 -3.0 372 7-387 102-541 (594)
77 1p9a_G Platelet glycoprotein I 99.9 6.8E-24 2.3E-28 201.2 19.3 206 205-416 5-211 (290)
78 2o6q_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 194.6 21.8 202 164-368 18-220 (270)
79 3rfs_A Internalin B, repeat mo 99.9 1.6E-23 5.4E-28 197.1 17.1 186 182-376 59-245 (272)
80 3rfs_A Internalin B, repeat mo 99.9 1.4E-23 4.8E-28 197.5 16.3 141 182-352 105-245 (272)
81 4glp_A Monocyte differentiatio 99.9 1.3E-23 4.4E-28 201.9 13.4 199 186-390 91-307 (310)
82 2xwt_C Thyrotropin receptor; s 99.9 4E-23 1.4E-27 190.6 14.6 196 187-387 32-236 (239)
83 2ca6_A RAN GTPase-activating p 99.9 4.2E-25 1.5E-29 219.2 1.1 247 26-274 24-319 (386)
84 4glp_A Monocyte differentiatio 99.9 3.9E-23 1.3E-27 198.5 14.5 225 137-367 65-308 (310)
85 2ca6_A RAN GTPase-activating p 99.9 4E-25 1.4E-29 219.4 -0.2 187 183-369 91-319 (386)
86 3goz_A Leucine-rich repeat-con 99.9 1.6E-24 5.4E-29 212.9 2.7 250 141-392 3-299 (362)
87 1h6u_A Internalin H; cell adhe 99.9 2.3E-22 7.9E-27 192.6 16.8 193 184-391 39-231 (308)
88 3m19_A Variable lymphocyte rec 99.9 6.2E-22 2.1E-26 183.9 18.7 177 187-366 15-192 (251)
89 3goz_A Leucine-rich repeat-con 99.9 2E-24 6.9E-29 212.2 0.6 108 14-122 2-124 (362)
90 2ast_B S-phase kinase-associat 99.9 6.2E-24 2.1E-28 206.8 4.1 254 35-303 48-315 (336)
91 2ast_B S-phase kinase-associat 99.9 9E-24 3.1E-28 205.7 4.5 229 162-395 70-311 (336)
92 2xwt_C Thyrotropin receptor; s 99.9 4E-22 1.4E-26 183.9 14.8 196 162-363 31-236 (239)
93 3m19_A Variable lymphocyte rec 99.9 1.7E-21 6E-26 180.9 18.8 179 211-392 15-194 (251)
94 1h6u_A Internalin H; cell adhe 99.9 1.6E-21 5.4E-26 186.8 18.2 191 162-367 41-231 (308)
95 4ay9_X Follicle-stimulating ho 99.9 3.1E-21 1E-25 188.5 18.3 250 3-291 3-256 (350)
96 3cvr_A Invasion plasmid antige 99.8 1.4E-20 4.8E-25 193.2 15.5 184 137-349 60-250 (571)
97 2o6s_A Variable lymphocyte rec 99.8 3.1E-20 1.1E-24 167.2 15.0 158 187-351 29-187 (208)
98 3cvr_A Invasion plasmid antige 99.8 3.7E-20 1.3E-24 190.0 17.3 188 163-377 60-254 (571)
99 2o6s_A Variable lymphocyte rec 99.8 7.4E-20 2.5E-24 164.8 15.9 162 162-330 28-190 (208)
100 4ay9_X Follicle-stimulating ho 99.8 1.4E-19 4.9E-24 176.6 17.7 200 86-318 12-215 (350)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 4.2E-20 1.5E-24 167.5 10.6 156 213-394 14-170 (220)
102 1h6t_A Internalin B; cell adhe 99.8 1.6E-19 5.3E-24 171.3 14.6 172 207-391 43-214 (291)
103 2v9t_B SLIT homolog 2 protein 99.8 1.2E-19 4.1E-24 164.5 10.9 153 213-391 14-166 (220)
104 1h6t_A Internalin B; cell adhe 99.8 3.2E-19 1.1E-23 169.2 12.4 171 184-367 44-214 (291)
105 1m9s_A Internalin B; cell inva 99.8 4.3E-19 1.5E-23 184.2 14.4 190 164-368 23-212 (605)
106 1m9s_A Internalin B; cell inva 99.8 7.5E-19 2.6E-23 182.4 15.6 193 137-346 22-214 (605)
107 2xot_A Amphoterin-induced prot 99.8 6.4E-19 2.2E-23 172.7 13.9 177 190-392 22-204 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 1.8E-18 6.2E-23 156.7 15.3 152 189-367 14-167 (220)
109 2v9t_B SLIT homolog 2 protein 99.8 2.5E-18 8.5E-23 155.8 15.3 150 189-341 14-164 (220)
110 2xot_A Amphoterin-induced prot 99.8 3.8E-18 1.3E-22 167.2 15.6 175 139-318 21-202 (361)
111 3e6j_A Variable lymphocyte rec 99.8 7.4E-18 2.5E-22 153.8 16.4 152 164-318 21-172 (229)
112 3e6j_A Variable lymphocyte rec 99.8 6.1E-18 2.1E-22 154.3 15.7 153 211-367 20-173 (229)
113 1w8a_A SLIT protein; signaling 99.8 1.3E-18 4.3E-23 154.2 9.7 129 237-368 11-141 (192)
114 4ezg_A Putative uncharacterize 99.8 2.5E-18 8.5E-23 153.2 10.9 153 207-390 41-194 (197)
115 1dce_A Protein (RAB geranylger 99.7 2.6E-21 8.7E-26 199.8 -11.0 203 80-312 346-567 (567)
116 1xeu_A Internalin C; cellular 99.7 1.7E-18 5.8E-23 161.5 8.7 168 185-366 18-185 (263)
117 4ezg_A Putative uncharacterize 99.7 1.2E-17 4.1E-22 148.7 13.7 127 163-294 45-172 (197)
118 1dce_A Protein (RAB geranylger 99.7 3.4E-20 1.2E-24 191.4 -3.6 122 259-384 442-567 (567)
119 4b8c_D Glucose-repressible alc 99.7 9.1E-19 3.1E-23 186.5 6.8 181 177-366 215-404 (727)
120 1xeu_A Internalin C; cellular 99.7 4.9E-18 1.7E-22 158.3 9.8 171 208-392 17-187 (263)
121 3sb4_A Hypothetical leucine ri 99.7 9.7E-18 3.3E-22 162.2 11.1 285 9-311 24-327 (329)
122 4b8c_D Glucose-repressible alc 99.7 1.5E-18 5.3E-23 184.7 5.6 193 192-394 207-408 (727)
123 1w8a_A SLIT protein; signaling 99.7 3.7E-17 1.3E-21 144.8 13.0 132 261-394 11-143 (192)
124 2wfh_A SLIT homolog 2 protein 99.7 6.7E-17 2.3E-21 143.0 9.8 130 261-393 13-142 (193)
125 2ell_A Acidic leucine-rich nuc 99.7 1.8E-16 6.3E-21 137.2 10.6 131 234-365 24-159 (168)
126 2ell_A Acidic leucine-rich nuc 99.7 2.6E-16 8.9E-21 136.2 10.3 107 186-294 24-133 (168)
127 2je0_A Acidic leucine-rich nuc 99.7 2.5E-16 8.6E-21 133.3 9.7 127 234-361 17-148 (149)
128 2o6r_A Variable lymphocyte rec 99.7 8.9E-16 3.1E-20 134.0 12.7 133 260-394 9-141 (177)
129 4fdw_A Leucine rich hypothetic 99.6 2.2E-14 7.6E-19 141.5 23.7 263 34-317 113-382 (401)
130 4fs7_A Uncharacterized protein 99.6 2E-14 6.9E-19 142.5 22.8 198 180-387 179-376 (394)
131 3sb4_A Hypothetical leucine ri 99.6 9.7E-16 3.3E-20 148.1 12.1 245 135-390 24-310 (329)
132 2je0_A Acidic leucine-rich nuc 99.6 4.4E-16 1.5E-20 131.8 8.2 124 212-337 19-148 (149)
133 2wfh_A SLIT homolog 2 protein 99.6 3.5E-15 1.2E-19 131.9 13.9 128 237-367 13-140 (193)
134 4fdw_A Leucine rich hypothetic 99.6 5.7E-14 2E-18 138.6 23.6 267 56-342 110-383 (401)
135 4fs7_A Uncharacterized protein 99.6 1.6E-13 5.6E-18 135.9 24.3 335 22-382 59-393 (394)
136 2o6r_A Variable lymphocyte rec 99.6 2E-14 6.8E-19 125.4 13.3 133 11-152 8-140 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.6 5.5E-15 1.9E-19 128.8 9.0 130 257-390 18-153 (176)
138 1ds9_A Outer arm dynein; leuci 99.5 3E-17 1E-21 146.3 -7.0 123 257-383 47-180 (198)
139 1ds9_A Outer arm dynein; leuci 99.5 4E-17 1.4E-21 145.4 -6.5 155 206-366 14-185 (198)
140 1a9n_A U2A', U2A'; complex (nu 99.5 1.4E-14 4.7E-19 126.3 9.1 110 182-294 15-126 (176)
141 3g39_A Variable lymphocyte rec 99.5 2.4E-13 8.3E-18 117.4 11.4 106 260-367 11-116 (170)
142 4gt6_A Cell surface protein; l 99.5 1.9E-11 6.5E-16 121.0 25.9 328 27-387 56-388 (394)
143 3g39_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 116.7 10.7 110 282-394 10-119 (170)
144 2r9u_A Variable lymphocyte rec 99.4 6E-13 2.1E-17 115.3 11.3 104 261-366 15-118 (174)
145 4gt6_A Cell surface protein; l 99.4 1.6E-11 5.5E-16 121.6 22.4 329 4-365 57-390 (394)
146 2r9u_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 114.6 10.7 108 283-393 14-121 (174)
147 3un9_A NLR family member X1; l 99.3 6.4E-14 2.2E-18 136.9 -5.0 146 59-206 101-259 (372)
148 3un9_A NLR family member X1; l 99.3 2.3E-13 8E-18 132.9 -2.3 110 281-390 126-252 (372)
149 4h09_A Hypothetical leucine ri 99.2 1.4E-09 4.9E-14 107.0 23.6 143 230-377 213-356 (379)
150 2ifg_A High affinity nerve gro 99.2 2.9E-11 9.8E-16 117.6 11.1 103 262-366 12-116 (347)
151 2ifg_A High affinity nerve gro 99.2 3.2E-11 1.1E-15 117.3 10.5 108 284-394 11-120 (347)
152 4h09_A Hypothetical leucine ri 99.2 7.9E-09 2.7E-13 101.6 24.7 153 230-387 190-343 (379)
153 2ra8_A Uncharacterized protein 99.0 1.2E-10 4.2E-15 112.6 2.4 83 304-388 251-341 (362)
154 2ra8_A Uncharacterized protein 98.9 1.4E-09 4.9E-14 105.1 6.1 102 10-115 107-227 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 4.2E-08 1.4E-12 85.5 1.7 14 231-244 33-46 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 4.7E-08 1.6E-12 85.2 1.8 43 205-247 31-78 (185)
157 3rw6_A Nuclear RNA export fact 98.4 4.4E-08 1.5E-12 89.7 0.2 85 56-142 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 7.7E-08 2.6E-12 88.1 0.5 80 303-383 168-257 (267)
159 4gt4_A Tyrosine-protein kinase 98.1 3E-07 1E-11 86.8 -0.1 42 498-539 32-80 (308)
160 4aoj_A High affinity nerve gro 98.1 5.9E-07 2E-11 85.6 1.7 48 493-540 42-95 (329)
161 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5.1E-11 73.6 3.2 92 26-118 53-150 (176)
162 4asz_A BDNF/NT-3 growth factor 98.1 9.8E-07 3.4E-11 82.9 2.2 47 494-540 15-67 (299)
163 3e4g_A ATP synthase subunit S, 98.0 2.8E-06 9.4E-11 72.0 3.1 86 58-148 60-151 (176)
164 2nru_A Interleukin-1 receptor- 98.0 5.9E-06 2E-10 78.3 5.3 61 478-539 11-81 (307)
165 3uim_A Brassinosteroid insensi 97.9 3.7E-06 1.3E-10 80.5 3.3 62 478-539 16-78 (326)
166 2c30_A Serine/threonine-protei 97.9 6.1E-06 2.1E-10 78.8 4.3 62 478-539 21-93 (321)
167 2qkw_B Protein kinase; three-h 97.9 1.9E-06 6.5E-11 82.3 0.7 59 481-539 28-86 (321)
168 4fih_A Serine/threonine-protei 97.7 2.7E-05 9.1E-10 74.3 4.3 46 494-539 76-122 (346)
169 3omv_A RAF proto-oncogene seri 97.6 1.6E-05 5.5E-10 74.7 1.8 42 496-539 40-83 (307)
170 4fie_A Serine/threonine-protei 97.5 5.8E-05 2E-09 73.9 4.3 47 493-539 152-199 (423)
171 3fpq_A Serine/threonine-protei 97.4 4.4E-05 1.5E-09 71.1 2.3 42 498-539 32-76 (290)
172 4b9d_A Serine/threonine-protei 97.4 5.4E-05 1.9E-09 72.2 2.0 47 493-539 25-74 (350)
173 4ase_A Vascular endothelial gr 97.3 5.8E-05 2E-09 72.5 1.9 48 492-539 64-118 (353)
174 3hyh_A Carbon catabolite-derep 97.3 0.0001 3.6E-09 67.9 3.2 48 492-539 13-64 (275)
175 3kul_A Ephrin type-A receptor 97.3 9.3E-05 3.2E-09 70.6 2.5 58 482-539 30-101 (325)
176 3pg1_A Mitogen-activated prote 97.2 0.00016 5.4E-09 70.1 3.6 45 482-526 12-56 (362)
177 4b99_A Mitogen-activated prote 97.2 0.00014 4.8E-09 71.1 2.5 47 493-539 55-104 (398)
178 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00018 6.3E-09 62.0 2.8 16 373-388 153-168 (197)
179 3dzo_A Rhoptry kinase domain; 97.1 0.00016 5.5E-09 71.5 2.7 50 490-539 76-129 (413)
180 4aw0_A HPDK1, 3-phosphoinositi 97.1 0.00014 4.8E-09 68.2 2.0 48 492-539 32-83 (311)
181 3ubd_A Ribosomal protein S6 ki 97.1 0.00019 6.4E-09 67.2 2.8 47 493-539 25-77 (304)
182 3p1a_A MYT1 kinase, membrane-a 97.1 6.1E-05 2.1E-09 71.4 -0.6 36 492-527 57-93 (311)
183 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00027 9.2E-09 61.0 3.0 112 254-365 37-169 (197)
184 2clq_A Mitogen-activated prote 97.0 0.0004 1.4E-08 65.0 4.3 46 494-539 24-70 (295)
185 1qcf_A Haematopoetic cell kina 97.0 0.0003 1E-08 70.5 3.1 48 491-539 187-234 (454)
186 4aw2_A Serine/threonine-protei 97.0 0.00015 5.2E-09 72.0 0.8 44 483-526 65-109 (437)
187 2qol_A Ephrin receptor; recept 97.0 0.00019 6.4E-09 69.9 1.3 48 492-539 45-97 (373)
188 3niz_A Rhodanese family protei 96.9 0.00042 1.4E-08 65.5 2.9 48 492-539 21-70 (311)
189 4f9c_A Cell division cycle 7-r 96.9 0.00034 1.2E-08 67.5 2.1 49 489-539 18-70 (361)
190 3fxz_A Serine/threonine-protei 96.8 0.00064 2.2E-08 63.8 3.9 48 492-539 20-68 (297)
191 3byv_A Rhoptry kinase; malaria 96.8 0.00047 1.6E-08 67.2 2.8 48 492-539 73-124 (377)
192 2x4f_A Myosin light chain kina 96.8 0.00037 1.3E-08 67.8 2.0 45 495-539 92-137 (373)
193 2vuw_A Serine/threonine-protei 96.8 0.00036 1.2E-08 66.8 1.9 35 492-527 20-54 (336)
194 3gen_A Tyrosine-protein kinase 96.8 0.00049 1.7E-08 64.0 2.7 47 492-539 24-70 (283)
195 2vd5_A DMPK protein; serine/th 96.8 0.0003 1E-08 69.3 1.1 44 483-526 52-96 (412)
196 1fmk_A C-SRC, P60-SRC, tyrosin 96.8 0.00056 1.9E-08 68.4 3.1 47 492-539 184-230 (452)
197 2ac3_A MAP kinase-interacting 96.8 0.00074 2.5E-08 63.9 3.7 42 498-539 19-61 (316)
198 3cbl_A C-FES, proto-oncogene t 96.8 0.00039 1.3E-08 67.8 1.7 48 492-539 114-163 (377)
199 1qpc_A LCK kinase; alpha beta 96.7 0.00056 1.9E-08 63.4 2.7 47 492-539 13-59 (279)
200 2zmd_A Dual specificity protei 96.7 0.00041 1.4E-08 68.0 1.7 47 493-539 57-105 (390)
201 4g3f_A NF-kappa-beta-inducing 96.7 0.00066 2.3E-08 64.4 3.0 36 492-527 58-94 (336)
202 4f0f_A Serine/threonine-protei 96.7 0.00089 3E-08 62.4 3.7 37 492-528 19-56 (287)
203 1zar_A RIO2 kinase; serine kin 96.7 0.00074 2.5E-08 62.8 3.0 40 488-527 86-125 (282)
204 3vhe_A Vascular endothelial gr 96.7 0.00021 7.3E-09 69.1 -0.7 55 485-539 15-76 (359)
205 3p86_A Serine/threonine-protei 96.7 0.00048 1.6E-08 65.1 1.7 47 492-539 37-85 (309)
206 2x7f_A TRAF2 and NCK-interacti 96.7 0.00026 8.9E-09 67.4 -0.3 58 481-539 13-71 (326)
207 2h8h_A Proto-oncogene tyrosine 96.6 0.00073 2.5E-08 69.2 2.9 47 492-539 267-313 (535)
208 2w1i_A JAK2; chromosomal rearr 96.6 0.00063 2.1E-08 64.8 2.2 46 494-539 43-93 (326)
209 1k9a_A Carboxyl-terminal SRC k 96.6 0.00082 2.8E-08 67.2 2.8 45 492-539 193-237 (450)
210 1opk_A P150, C-ABL, proto-onco 96.6 0.00081 2.8E-08 68.1 2.7 47 492-539 220-267 (495)
211 2psq_A Fibroblast growth facto 96.6 0.00063 2.1E-08 66.1 1.8 48 492-539 81-137 (370)
212 3v8s_A RHO-associated protein 96.6 0.00062 2.1E-08 67.0 1.7 42 485-526 62-104 (410)
213 3rfe_A Platelet glycoprotein I 96.6 0.0043 1.5E-07 49.8 6.4 57 333-391 12-69 (130)
214 2j7t_A Serine/threonine-protei 96.6 0.0012 4.1E-08 62.0 3.6 48 492-539 19-67 (302)
215 3soc_A Activin receptor type-2 96.6 0.00082 2.8E-08 63.9 2.5 35 492-527 24-58 (322)
216 2buj_A Serine/threonine-protei 96.5 0.00066 2.3E-08 64.3 1.7 48 492-539 29-77 (317)
217 3lxl_A Tyrosine-protein kinase 96.5 0.00056 1.9E-08 65.2 1.1 47 493-539 24-75 (327)
218 3e7e_A HBUB1, BUB1A, mitotic c 96.5 0.00072 2.5E-08 65.6 1.8 38 490-527 63-106 (365)
219 3cek_A Dual specificity protei 96.5 0.00076 2.6E-08 63.8 1.8 50 490-539 26-77 (313)
220 1mqb_A Ephrin type-A receptor 96.5 0.00093 3.2E-08 63.8 2.3 57 483-539 26-97 (333)
221 1u5q_A Serine/threonine protei 96.5 0.0011 3.6E-08 63.8 2.6 48 492-539 54-105 (348)
222 3uto_A Twitchin; kinase, muscl 96.5 0.00083 2.9E-08 69.1 2.0 48 492-539 157-205 (573)
223 3uqc_A Probable conserved tran 96.5 0.0014 4.7E-08 61.1 3.3 47 493-539 32-82 (286)
224 2y7j_A Phosphorylase B kinase 96.5 0.0018 6.1E-08 62.7 4.2 42 487-528 89-131 (365)
225 3llt_A Serine/threonine kinase 96.4 0.00037 1.3E-08 67.5 -0.8 48 479-526 22-70 (360)
226 3mi9_A Cell division protein k 96.4 0.0016 5.6E-08 62.6 3.8 48 492-539 17-67 (351)
227 3l9p_A Anaplastic lymphoma kin 96.4 0.0011 3.6E-08 64.4 2.4 48 492-539 71-125 (367)
228 2w4o_A Calcium/calmodulin-depe 96.4 0.0013 4.4E-08 63.3 3.1 47 491-539 52-99 (349)
229 1luf_A Muscle-specific tyrosin 96.4 0.00091 3.1E-08 64.1 1.9 50 490-539 45-101 (343)
230 3fe3_A MAP/microtubule affinit 96.4 0.001 3.5E-08 63.4 2.1 49 491-539 14-65 (328)
231 2zv2_A Calcium/calmodulin-depe 96.4 0.0014 4.7E-08 61.4 2.9 36 492-527 13-49 (298)
232 3ll6_A Cyclin G-associated kin 96.4 0.00084 2.9E-08 64.1 1.4 47 493-539 29-76 (337)
233 2pvf_A Fibroblast growth facto 96.4 0.001 3.6E-08 63.5 2.0 48 492-539 35-91 (334)
234 1vzo_A Ribosomal protein S6 ki 96.4 0.0012 4.2E-08 63.6 2.5 35 492-526 54-92 (355)
235 3is5_A Calcium-dependent prote 96.3 0.0017 6E-08 60.3 3.1 48 492-539 22-71 (285)
236 2pml_X PFPK7, Ser/Thr protein 96.3 0.0011 3.9E-08 63.6 1.8 35 492-527 31-65 (348)
237 3a62_A Ribosomal protein S6 ki 96.3 0.0015 5E-08 62.3 2.6 36 492-527 17-56 (327)
238 1p4o_A Insulin-like growth fac 96.3 0.00045 1.5E-08 65.6 -1.0 53 487-539 20-79 (322)
239 2ozo_A Tyrosine-protein kinase 96.3 0.0016 5.6E-08 67.7 3.1 41 499-539 343-387 (613)
240 1t46_A HOMO sapiens V-KIT hard 96.3 0.001 3.4E-08 62.8 1.3 48 492-539 23-77 (313)
241 4e5w_A Tyrosine-protein kinase 96.3 0.0013 4.6E-08 61.6 2.2 46 494-539 23-74 (302)
242 3qup_A Tyrosine-protein kinase 96.3 0.001 3.5E-08 63.2 1.4 49 491-539 22-76 (323)
243 3an0_A Dual specificity mitoge 96.3 0.0017 5.8E-08 62.1 2.9 36 492-527 51-87 (340)
244 3hko_A Calcium/calmodulin-depe 96.3 0.0014 4.8E-08 62.8 2.3 53 487-539 21-79 (345)
245 2xir_A Vascular endothelial gr 96.3 0.00089 3E-08 63.3 0.7 54 486-539 21-81 (316)
246 3lxp_A Non-receptor tyrosine-p 96.2 0.0012 4.3E-08 62.5 1.7 45 495-539 34-84 (318)
247 3kfa_A Tyrosine-protein kinase 96.2 0.0017 5.7E-08 60.5 2.6 48 491-539 12-60 (288)
248 1rjb_A FL cytokine receptor; k 96.2 0.0015 5.1E-08 62.7 2.2 49 491-539 44-99 (344)
249 1byg_A CSK, protein (C-termina 96.2 0.002 6.7E-08 59.7 2.9 45 492-539 21-65 (278)
250 3ork_A Serine/threonine protei 96.2 0.0024 8.3E-08 60.2 3.6 47 493-539 13-63 (311)
251 3a7i_A MST3 kinase, serine/thr 96.2 0.0026 9E-08 59.6 3.8 48 492-539 22-71 (303)
252 2wqm_A Serine/threonine-protei 96.2 0.0017 5.8E-08 61.2 2.5 48 492-539 32-83 (310)
253 3e3p_A Protein kinase, putativ 96.2 0.0035 1.2E-07 60.5 4.7 43 485-527 16-59 (360)
254 3rfe_A Platelet glycoprotein I 96.2 0.0094 3.2E-07 47.8 6.5 10 262-271 12-21 (130)
255 3tt0_A Basic fibroblast growth 96.2 0.0012 4.2E-08 64.3 1.5 48 492-539 69-125 (382)
256 3i6u_A CDS1, serine/threonine- 96.2 0.0028 9.4E-08 62.7 3.9 37 490-526 133-170 (419)
257 3a99_A Proto-oncogene serine/t 96.2 0.0017 5.8E-08 61.6 2.2 37 492-528 43-80 (320)
258 3gbz_A Kinase, CMGC CDK; ssgci 96.2 0.0018 6.1E-08 61.7 2.3 50 490-539 32-84 (329)
259 2yab_A Death-associated protei 96.2 0.0026 8.9E-08 61.4 3.4 48 492-539 12-66 (361)
260 3poz_A Epidermal growth factor 96.1 0.0012 4E-08 63.0 0.9 48 492-539 15-68 (327)
261 3c1x_A Hepatocyte growth facto 96.1 0.0023 7.8E-08 62.2 3.0 45 496-540 93-142 (373)
262 3dls_A PAS domain-containing s 96.1 0.0019 6.5E-08 61.7 2.4 37 491-527 23-60 (335)
263 3aln_A Dual specificity mitoge 96.1 0.0022 7.6E-08 60.9 2.9 36 492-527 22-58 (327)
264 4fl3_A Tyrosine-protein kinase 96.1 0.0019 6.4E-08 67.5 2.5 42 498-539 375-421 (635)
265 4aaa_A Cyclin-dependent kinase 96.1 0.0028 9.6E-08 60.4 3.5 47 493-539 26-75 (331)
266 1xjd_A Protein kinase C, theta 96.1 0.0019 6.4E-08 62.0 2.3 38 489-526 14-52 (345)
267 2eue_A Carbon catabolite derep 96.1 0.0028 9.6E-08 58.5 3.4 48 492-539 13-64 (275)
268 1kob_A Twitchin; kinase, intra 96.1 0.0018 6.1E-08 63.2 2.1 48 492-539 51-99 (387)
269 3nsz_A CK II alpha, casein kin 96.1 0.0026 9E-08 60.5 3.2 45 492-539 36-81 (330)
270 3uc3_A Serine/threonine-protei 96.1 0.0043 1.5E-07 59.9 4.7 46 493-539 21-67 (361)
271 3rgf_A Cyclin-dependent kinase 96.1 0.0026 8.8E-08 62.6 3.2 41 497-539 26-69 (405)
272 2vwi_A Serine/threonine-protei 96.1 0.0021 7E-08 60.3 2.3 49 491-539 14-64 (303)
273 3rp9_A Mitogen-activated prote 96.1 0.0019 6.4E-08 64.8 2.1 48 492-539 53-103 (458)
274 3eqc_A Dual specificity mitoge 96.1 0.0025 8.7E-08 61.5 3.0 48 492-539 33-82 (360)
275 2ivs_A Proto-oncogene tyrosine 96.1 0.0016 5.5E-08 61.4 1.5 48 492-539 23-77 (314)
276 3cc6_A Protein tyrosine kinase 96.1 0.0021 7.3E-08 59.5 2.3 49 491-539 11-64 (281)
277 2iwi_A Serine/threonine-protei 96.1 0.0021 7.2E-08 60.6 2.2 39 489-527 28-67 (312)
278 1j1b_A Glycogen synthase kinas 96.0 0.0035 1.2E-07 62.0 3.8 35 493-527 55-90 (420)
279 1cm8_A Phosphorylated MAP kina 96.0 0.0027 9.1E-08 61.5 2.9 48 492-539 25-75 (367)
280 2fst_X Mitogen-activated prote 96.0 0.0016 5.3E-08 63.2 1.1 48 492-539 29-79 (367)
281 4ejn_A RAC-alpha serine/threon 96.0 0.0024 8.4E-08 63.7 2.5 48 492-539 148-199 (446)
282 2yfx_A Tyrosine-protein kinase 96.0 0.0028 9.7E-08 60.2 2.7 48 492-539 30-84 (327)
283 2a2a_A Death-associated protei 96.0 0.0031 1E-07 59.8 3.0 48 492-539 12-66 (321)
284 3q60_A ROP5B; pseudokinase, tr 96.0 0.0023 7.8E-08 62.1 2.1 36 493-528 63-99 (371)
285 3v5w_A G-protein coupled recep 96.0 0.0033 1.1E-07 65.0 3.3 35 492-526 189-224 (689)
286 4dc2_A Protein kinase C IOTA t 96.0 0.0033 1.1E-07 61.4 3.1 36 492-527 52-88 (396)
287 3pls_A Macrophage-stimulating 96.0 0.002 6.9E-08 60.2 1.6 45 495-539 24-73 (298)
288 3qyz_A Mitogen-activated prote 95.9 0.0026 9E-08 61.5 2.4 48 492-539 27-76 (364)
289 1zth_A RIO1 serine protein kin 95.9 0.0032 1.1E-07 57.6 2.8 30 497-526 52-84 (258)
290 3txo_A PKC-L, NPKC-ETA, protei 95.9 0.0019 6.6E-08 62.1 1.4 36 491-526 22-58 (353)
291 1t4h_A Serine/threonine-protei 95.9 0.0029 9.9E-08 58.9 2.5 43 497-539 31-76 (290)
292 1b6c_B TGF-B superfamily recep 95.9 0.0038 1.3E-07 59.6 3.4 37 489-526 39-75 (342)
293 2vx3_A Dual specificity tyrosi 95.9 0.002 7E-08 62.8 1.4 37 490-526 52-89 (382)
294 2r5t_A Serine/threonine-protei 95.9 0.0047 1.6E-07 59.9 4.0 36 492-527 38-74 (373)
295 2wei_A Calmodulin-domain prote 95.9 0.003 1E-07 58.7 2.5 48 492-539 22-72 (287)
296 1rdq_E PKA C-alpha, CAMP-depen 95.9 0.0032 1.1E-07 60.5 2.7 35 492-526 41-76 (350)
297 3c4z_A Rhodopsin kinase; Ser/T 95.9 0.0032 1.1E-07 64.1 2.7 48 492-539 185-236 (543)
298 4exu_A Mitogen-activated prote 95.9 0.0035 1.2E-07 60.8 2.9 48 492-539 42-92 (371)
299 3lm5_A Serine/threonine-protei 95.9 0.0036 1.2E-07 59.5 2.9 42 498-539 35-79 (327)
300 3com_A Serine/threonine-protei 95.9 0.0041 1.4E-07 58.6 3.2 47 491-539 28-75 (314)
301 3g2f_A Bone morphogenetic prot 95.8 0.0037 1.3E-07 59.6 2.9 35 492-527 13-47 (336)
302 1wak_A Serine/threonine-protei 95.8 0.002 6.7E-08 63.1 1.0 47 492-539 37-84 (397)
303 4fr4_A YANK1, serine/threonine 95.8 0.0036 1.2E-07 60.9 2.8 48 492-539 15-66 (384)
304 3n9x_A Phosphotransferase; mal 95.8 0.0023 7.9E-08 63.5 1.5 48 492-539 26-76 (432)
305 3coi_A Mitogen-activated prote 95.8 0.0036 1.2E-07 60.2 2.9 48 492-539 24-74 (353)
306 3og7_A AKAP9-BRAF fusion prote 95.8 0.0022 7.4E-08 59.8 1.2 45 493-539 25-71 (289)
307 1mp8_A Focal adhesion kinase 1 95.8 0.0029 9.9E-08 58.6 2.0 48 492-539 15-67 (281)
308 3brb_A Proto-oncogene tyrosine 95.8 0.0032 1.1E-07 59.4 2.3 49 491-539 33-87 (313)
309 2jii_A Serine/threonine-protei 95.8 0.0026 8.9E-08 61.2 1.7 35 492-526 42-85 (352)
310 2i0e_A Protein kinase C-beta I 95.8 0.0022 7.4E-08 61.8 1.1 36 491-526 19-55 (353)
311 2h34_A Serine/threonine-protei 95.8 0.0038 1.3E-07 58.8 2.8 48 492-539 34-85 (309)
312 2bdw_A Hypothetical protein K1 95.8 0.0029 9.9E-08 61.1 1.8 49 491-539 28-79 (362)
313 3ttj_A Mitogen-activated prote 95.8 0.0031 1.1E-07 63.2 2.1 48 492-539 62-112 (464)
314 3kvw_A DYRK2, dual specificity 95.8 0.0027 9.1E-08 63.0 1.6 34 493-526 98-132 (429)
315 2acx_A G protein-coupled recep 95.7 0.0033 1.1E-07 64.3 2.2 36 491-526 183-219 (576)
316 3kex_A Receptor tyrosine-prote 95.7 0.0062 2.1E-07 57.8 3.7 47 493-539 14-66 (325)
317 3mdy_A Bone morphogenetic prot 95.7 0.0033 1.1E-07 60.0 1.7 36 490-526 35-70 (337)
318 1phk_A Phosphorylase kinase; g 95.6 0.0035 1.2E-07 58.6 1.7 37 491-527 16-53 (298)
319 1xbb_A Tyrosine-protein kinase 95.6 0.0033 1.1E-07 58.6 1.6 41 499-539 24-69 (291)
320 2rio_A Serine/threonine-protei 95.6 0.0058 2E-07 60.7 3.4 31 496-526 19-49 (434)
321 3p23_A Serine/threonine-protei 95.6 0.004 1.4E-07 61.7 2.2 37 491-527 23-59 (432)
322 2dyl_A Dual specificity mitoge 95.6 0.0048 1.6E-07 58.2 2.6 36 492-527 25-61 (318)
323 2y94_A 5'-AMP-activated protei 95.6 0.005 1.7E-07 61.8 2.8 47 493-539 17-67 (476)
324 3c0i_A Peripheral plasma membr 95.6 0.0053 1.8E-07 59.0 2.9 47 493-539 25-77 (351)
325 4gyi_A RIO2 kinase; protein ki 95.6 0.0069 2.4E-07 58.3 3.6 32 495-526 98-129 (397)
326 3f66_A Hepatocyte growth facto 95.6 0.0033 1.1E-07 58.7 1.4 46 494-539 27-77 (298)
327 3op5_A Serine/threonine-protei 95.5 0.004 1.4E-07 60.2 1.8 38 490-527 33-76 (364)
328 1z57_A Dual specificity protei 95.5 0.004 1.4E-07 59.3 1.6 46 493-539 15-62 (339)
329 2i1m_A Macrophage colony-stimu 95.5 0.0043 1.5E-07 59.1 1.8 49 491-539 45-100 (333)
330 2xrw_A Mitogen-activated prote 95.5 0.0061 2.1E-07 59.1 2.8 48 492-539 25-75 (371)
331 2y4i_B KSR2, HKSR2, kinase sup 95.5 0.0093 3.2E-07 56.2 4.1 46 492-539 33-80 (319)
332 3mwu_A Calmodulin-domain prote 95.4 0.0052 1.8E-07 62.1 2.4 47 493-539 23-72 (486)
333 3nyv_A Calmodulin-domain prote 95.4 0.0059 2E-07 61.6 2.7 47 493-539 27-77 (484)
334 2vgo_A Serine/threonine-protei 95.4 0.0049 1.7E-07 57.1 1.9 48 492-539 14-65 (284)
335 3pfq_A PKC-B, PKC-beta, protei 95.4 0.0061 2.1E-07 64.1 2.7 36 491-526 340-376 (674)
336 2rku_A Serine/threonine-protei 95.4 0.0045 1.6E-07 57.7 1.5 48 492-539 15-66 (294)
337 3lzb_A Epidermal growth factor 95.4 0.0048 1.6E-07 58.6 1.7 48 492-539 15-68 (327)
338 1fvr_A Tyrosine-protein kinase 95.4 0.0065 2.2E-07 57.7 2.6 48 492-539 25-76 (327)
339 2qr7_A Ribosomal protein S6 ki 95.3 0.0079 2.7E-07 57.5 3.2 38 491-528 21-59 (342)
340 1u46_A ACK-1, activated CDC42 95.3 0.0041 1.4E-07 57.8 1.1 48 492-539 18-72 (291)
341 3fhr_A MAP kinase-activated pr 95.3 0.0089 3E-07 57.0 3.4 35 492-526 28-64 (336)
342 2pzi_A Probable serine/threoni 95.3 0.0047 1.6E-07 65.3 1.6 48 492-539 80-130 (681)
343 3gni_B Strad alpha; kinase fol 95.3 0.0075 2.6E-07 58.8 2.8 47 493-539 26-77 (389)
344 1q8y_A SR protein kinase; tran 95.2 0.0051 1.8E-07 59.6 1.5 34 493-526 20-54 (373)
345 4e7w_A Glycogen synthase kinas 95.2 0.0096 3.3E-07 58.2 3.1 35 493-527 41-75 (394)
346 2owb_A Serine/threonine-protei 95.1 0.0058 2E-07 58.2 1.5 48 492-539 41-92 (335)
347 3lij_A Calcium/calmodulin depe 95.1 0.009 3.1E-07 60.4 2.9 47 493-539 38-87 (494)
348 3q5i_A Protein kinase; CDPK, m 95.0 0.01 3.4E-07 60.2 3.1 37 491-527 35-72 (504)
349 3m2w_A MAP kinase-activated pr 95.0 0.012 4E-07 55.1 3.0 29 498-526 24-53 (299)
350 1nxk_A MAP kinase-activated pr 94.9 0.012 3.9E-07 57.7 3.0 29 498-526 68-97 (400)
351 2eu9_A Dual specificity protei 94.8 0.006 2.1E-07 58.5 0.7 47 492-539 19-67 (355)
352 3lb7_A RAF proto-oncogene seri 94.6 0.0067 2.3E-07 57.0 0.5 45 493-539 37-83 (307)
353 2j0j_A Focal adhesion kinase 1 94.6 0.014 4.8E-07 61.2 2.7 48 492-539 390-442 (656)
354 3qa8_A MGC80376 protein; kinas 94.4 0.0044 1.5E-07 64.4 -1.4 48 492-539 14-63 (676)
355 2v62_A Serine/threonine-protei 94.2 0.014 4.7E-07 55.9 1.7 36 492-527 37-76 (345)
356 3en9_A Glycoprotease, O-sialog 93.2 0.069 2.4E-06 54.4 4.8 30 496-526 340-369 (540)
357 3d1u_A Putative fructosamine-3 91.8 0.084 2.9E-06 48.9 3.0 46 494-539 17-62 (288)
358 2ks1_B Epidermal growth factor 89.3 0.22 7.6E-06 30.5 2.2 10 454-463 30-39 (44)
359 3f7w_A Putative fructosamine-3 84.7 0.56 1.9E-05 43.2 3.4 46 494-539 17-62 (288)
360 2l2t_A Receptor tyrosine-prote 84.3 0.49 1.7E-05 28.9 1.7 11 454-464 29-39 (44)
361 2k1k_A Ephrin type-A receptor 83.1 0.45 1.5E-05 28.2 1.2 19 435-453 10-28 (38)
362 2jwa_A Receptor tyrosine-prote 81.6 0.49 1.7E-05 28.9 1.0 7 438-444 14-20 (44)
363 2lz0_A Uncharacterized protein 68.6 11 0.00039 27.9 5.9 37 28-66 14-50 (100)
364 2lz0_A Uncharacterized protein 68.4 11 0.00038 27.9 5.7 47 45-93 7-53 (100)
365 3tm0_A Aminoglycoside 3'-phosp 64.1 6.6 0.00023 35.0 4.6 52 487-539 9-60 (263)
366 1nd4_A Aminoglycoside 3'-phosp 58.9 3.1 0.00011 37.1 1.3 27 501-527 29-55 (264)
367 2olc_A MTR kinase, methylthior 39.2 17 0.00059 34.8 3.1 29 497-525 35-64 (397)
368 3cxl_A N-chimerin; SH2, RHO-GA 31.8 5 0.00017 39.6 -2.1 23 505-527 152-181 (463)
369 3ugc_A Tyrosine-protein kinase 21.8 24 0.00082 31.8 0.7 26 514-539 37-62 (295)
370 2l34_A TYRO protein tyrosine k 21.1 28 0.00097 19.7 0.6 17 437-453 8-24 (33)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.2e-56 Score=479.64 Aligned_cols=409 Identities=33% Similarity=0.545 Sum_probs=320.9
Q ss_pred CCCCCCEEeccCcccccCCCccccCC-CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcc-ccCCCCC
Q 045304 8 NLRNLELLVLSHNKLVGVIPTKVFNV-STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHF-IFNASKL 85 (540)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L 85 (540)
.+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|..+ ..+++|++|++++|.+++.+|.. +.++++|
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L 345 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGL 345 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCC
Confidence 56777777777777777777776654 777777777777776666665 57777777777777777666655 6777777
Q ss_pred CEEEccCCcccccCCccccCCC-CCCEEECcCccccCCCCCccccccCCC--CCCCCEEECcCCCCCccCCccccccccc
Q 045304 86 SLLELGDNSFSGFIPDTFGNLR-NLNKVTLYNNYLTSSTSDLNFLSSLSN--CKTLTYIDLSDNPLDGILPGTSVGNLSH 162 (540)
Q Consensus 86 ~~L~L~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 162 (540)
++|++++|.+++.+|..+.+++ +|++|++++|.+.+. ++..+.. +++|+.|++++|.+.+.+| ..++.+ +
T Consensus 346 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~l-~ 418 (768)
T 3rgz_A 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP-----ILPNLCQNPKNTLQELYLQNNGFTGKIP-PTLSNC-S 418 (768)
T ss_dssp CEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEE-----CCTTTTCSTTCCCCEEECCSSEEEEECC-GGGGGC-T
T ss_pred CEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCC-----cChhhhhcccCCccEEECCCCccccccC-HHHhcC-C
Confidence 7777777777777777777666 777777777777654 3344444 6677777777777776666 566666 6
Q ss_pred cCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC
Q 045304 163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242 (540)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 242 (540)
+|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEcc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCCCccc---------------------
Q 045304 243 SNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPLPLE--------------------- 300 (540)
Q Consensus 243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~~~~~--------------------- 300 (540)
+|++++.+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|++.|.+|..
T Consensus 499 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred CCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 777777777777777777777777777765 6777777777777777777776666543
Q ss_pred -------------------------------------------------cccccCcceEEcccceeeecCccccccCCCC
Q 045304 301 -------------------------------------------------IENLKVLVGIDFSVNNFSGVIPTTIGSLKGL 331 (540)
Q Consensus 301 -------------------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 331 (540)
+..++.|+.||+++|+++|.+|..++.++.|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 4445778999999999999999999999999
Q ss_pred cEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCC
Q 045304 332 QYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNE 411 (540)
Q Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~ 411 (540)
+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+..+++|+.||+++|+++|.+|..+.+.++...++.||+
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCT
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 045304 412 LLCGSPNLRVPPCKTS 427 (540)
Q Consensus 412 ~~c~~~~~~~~~~~~~ 427 (540)
.+||.|. ++|...
T Consensus 739 ~Lcg~~l---~~C~~~ 751 (768)
T 3rgz_A 739 GLCGYPL---PRCDPS 751 (768)
T ss_dssp EEESTTS---CCCCSC
T ss_pred hhcCCCC---cCCCCC
Confidence 9999763 367644
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-52 Score=450.28 Aligned_cols=398 Identities=34% Similarity=0.536 Sum_probs=304.9
Q ss_pred cCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC-CC
Q 045304 6 IGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA-SK 84 (540)
Q Consensus 6 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~ 84 (540)
++++++|++|++++|.+++.+|..++.+++|++|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDT 295 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence 788888888888888888778888888888888888888777655543 56666666666666666666655543 66
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCcccccc-CCCCCCCCEEECcCCCCCccCCccccccc---
Q 045304 85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSS-LSNCKTLTYIDLSDNPLDGILPGTSVGNL--- 160 (540)
Q Consensus 85 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~l--- 160 (540)
|++|++++|.+++.+|..|+++++|++|++++|.+.+. ++.. +..+++|++|++++|.+.+.+| ..+..+
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-----ip~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~~ 369 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE-----LPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSAS 369 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE-----CCHHHHTTCTTCCEEECCSSEEEECCC-TTHHHHTTT
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc-----CCHHHHhcCCCCCEEeCcCCccCcccc-HHHHhhhcC
Confidence 66666666666666666666666666666666655532 2222 4445555555555554444433 222222
Q ss_pred -----------------------cccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeee
Q 045304 161 -----------------------SHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSL 217 (540)
Q Consensus 161 -----------------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 217 (540)
.++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 246777777777777788888888888888888888888888888888888888888
Q ss_pred eCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCC
Q 045304 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGP 296 (540)
Q Consensus 218 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~ 296 (540)
++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+.
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 529 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN 529 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc
Confidence 8888888888888888888888888888888888888888889999999888885 788888888999999999999888
Q ss_pred CccccccccCcceEEcccceeeecCccccc--------------------------------------------------
Q 045304 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIG-------------------------------------------------- 326 (540)
Q Consensus 297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------------------------------- 326 (540)
+|..+..+++|+.|++++|.++|.+|..+.
T Consensus 530 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 609 (768)
T 3rgz_A 530 IPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGG
T ss_pred CCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccc
Confidence 888888889999999998888877775432
Q ss_pred --------------------cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304 327 --------------------SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF 386 (540)
Q Consensus 327 --------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 386 (540)
.+++|+.|++++|+++|.+|..++.+++|+.|+|++|+++|.+|..+..+++|+.||+++
T Consensus 610 ~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~ 689 (768)
T 3rgz_A 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689 (768)
T ss_dssp TCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence 246788899999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeCCCC-CCCCCCCcccccCCCC
Q 045304 387 NKLAGEIPRG-GSFGNFSAESFEGNEL 412 (540)
Q Consensus 387 n~l~~~~p~~-~~~~~~~~~~~~~n~~ 412 (540)
|+++|.+|.. ..+..+...++.+|+.
T Consensus 690 N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 690 NKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp SCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CcccCcCChHHhCCCCCCEEECcCCcc
Confidence 9999998864 4456677777877764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=7.4e-47 Score=399.34 Aligned_cols=410 Identities=20% Similarity=0.199 Sum_probs=285.0
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA 82 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 82 (540)
|.+|+++++|++|+|++|.+++..|.+|+++++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+..++++
T Consensus 50 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~l~~~~~~~l 128 (606)
T 3t6q_A 50 NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL-SGPKALKHLFFIQTGISSIDFIPLHNQ 128 (606)
T ss_dssp TTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT-SSCTTCCEEECTTSCCSCGGGSCCTTC
T ss_pred hhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh-cccccccEeeccccCcccCCcchhccC
Confidence 5567788888888888888877777778888888888888887774444443 677777777777777776555666677
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCC--------------------------CCCc----------
Q 045304 83 SKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSS--------------------------TSDL---------- 126 (540)
Q Consensus 83 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--------------------------~~~~---------- 126 (540)
++|++|++++|.+.+.....+..+++|++|++++|.+++. ....
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~ 208 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccc
Confidence 7777777777766654333344466666666666554432 1100
Q ss_pred -----------------------------------------------------------c-ccccCCCCCCCCEEECcCC
Q 045304 127 -----------------------------------------------------------N-FLSSLSNCKTLTYIDLSDN 146 (540)
Q Consensus 127 -----------------------------------------------------------~-~~~~l~~l~~L~~L~l~~n 146 (540)
. .+..+..+++|++|++++|
T Consensus 209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 288 (606)
T 3t6q_A 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT 288 (606)
T ss_dssp CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence 0 0011444556666666666
Q ss_pred CCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCc-cccCCCCCCeeeeeCccccCc
Q 045304 147 PLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPI-TLSKLQKLQGLSLADNKLEGS 225 (540)
Q Consensus 147 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~~~~~ 225 (540)
.+. .+| ..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.
T Consensus 289 ~l~-~lp-~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 289 HLS-ELP-SGLVGL-STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp CCS-CCC-SSCCSC-TTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred ccC-CCC-hhhccc-ccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 555 233 334444 5666666666666655555666666666666666666544443 366667777777777776654
Q ss_pred C--CccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC-Cc-cccCCCCCcEEECCCCcccCCCcccc
Q 045304 226 I--PNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI-PL-TFWNLKDILYLNFSSNFLTGPLPLEI 301 (540)
Q Consensus 226 ~--p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-p~-~~~~l~~L~~L~L~~n~l~~~~~~~~ 301 (540)
. +..+..+++|++|++++|.+.+..|..|..+++|+.|++++|.+++. |. .+..+++|++|++++|.+.+..|..+
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 4 55677777777777777777777777777778888888888877763 33 46777888888888888887777788
Q ss_pred ccccCcceEEcccceeeec---CccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCC
Q 045304 302 ENLKVLVGIDFSVNNFSGV---IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSY 378 (540)
Q Consensus 302 ~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 378 (540)
..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..|..+..++.
T Consensus 446 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 525 (606)
T 3t6q_A 446 DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525 (606)
T ss_dssp TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS
T ss_pred hCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCcccc
Confidence 8888888888888888763 2356778888888888888888888888888888888888888888888888888888
Q ss_pred CCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCCC
Q 045304 379 LEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGSP 417 (540)
Q Consensus 379 L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~ 417 (540)
| .+++++|++++..|.. ..+..+...++.+||+.|.|+
T Consensus 526 L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 526 I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 8 8888888888665542 335567788889999888764
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-48 Score=406.39 Aligned_cols=349 Identities=22% Similarity=0.292 Sum_probs=202.1
Q ss_pred CCccccCCCCCCEEEcccCcCccc-----------------cchhhhc--CCCCCCEEEccCCcccccCCccccCCCCCC
Q 045304 26 IPTKVFNVSTLKVFEVSNNSLSGS-----------------LSSIAGV--RLPNLEVLRMRSNNFCGTIPHFIFNASKLS 86 (540)
Q Consensus 26 ~~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 86 (540)
+|..++++++|++|+|++|.+++. +|..+ . ++++|++|++++|.+.+.+|..++++++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 555566666666666666666653 55554 3 566666666666666666666666666666
Q ss_pred EEEccCCc-ccc-cCCccccCC------CCCCEEECcCccccCCCCCccccc--cCCCCCCCCEEECcCCCCCccCCccc
Q 045304 87 LLELGDNS-FSG-FIPDTFGNL------RNLNKVTLYNNYLTSSTSDLNFLS--SLSNCKTLTYIDLSDNPLDGILPGTS 156 (540)
Q Consensus 87 ~L~L~~n~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~ 156 (540)
+|++++|. +++ .+|..++.+ ++|++|++++|.++. +|. .+.++++|++|++++|.+.|.+| .
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~------ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~ 348 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT------FPVETSLQKMKKLGMLECLYNQLEGKLP--A 348 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS------CCCHHHHTTCTTCCEEECCSCCCEEECC--C
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc------cCchhhhccCCCCCEEeCcCCcCccchh--h
Confidence 66666665 555 555555544 566666666666552 444 45566666666666666665555 4
Q ss_pred cccccccCcEEEccCCcceecCChhccCCCC-CCeeeccCCccccccCccccCCC--CCCeeeeeCccccCcCCcccc--
Q 045304 157 VGNLSHSLEYFYMPNCNVSGGIPEEISNLTN-LIIIYLGGNKLNGSIPITLSKLQ--KLQGLSLADNKLEGSIPNNIC-- 231 (540)
Q Consensus 157 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~~~~~~p~~~~-- 231 (540)
++.+ ++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +|+.|++++|.+.+.+|..+.
T Consensus 349 ~~~l-~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~ 425 (636)
T 4eco_A 349 FGSE-IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425 (636)
T ss_dssp CEEE-EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTT
T ss_pred hCCC-CCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccc
Confidence 4444 45666666666665 55555666666 666666666665 4555554433 566666666666665555555
Q ss_pred -----CCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCC--------CCCcEEECCCCcccCCCc
Q 045304 232 -----RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNL--------KDILYLNFSSNFLTGPLP 298 (540)
Q Consensus 232 -----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l--------~~L~~L~L~~n~l~~~~~ 298 (540)
.+++|++|++++|.++...+..+..+++|+.|++++|.++.+|...... ++|++|+|++|++. .+|
T Consensus 426 ~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 504 (636)
T 4eco_A 426 DPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS 504 (636)
T ss_dssp CSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC
T ss_pred ccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC
Confidence 5556666666666665333333444566666666666666555433221 15666666666665 455
Q ss_pred cccc--cccCcceEEcccceeeecCccccccCCCCcEEeC------cCccCcccCCcccCCCCCCCEEECCCCcCccccC
Q 045304 299 LEIE--NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV------GYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIP 370 (540)
Q Consensus 299 ~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 370 (540)
..+. .+++|+.|++++|.+++ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|+.|++++|++ +.+|
T Consensus 505 ~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip 582 (636)
T 4eco_A 505 DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN 582 (636)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC
T ss_pred hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC
Confidence 5554 56666666666666665 5555556666666666 33455555666666666666666666666 3555
Q ss_pred ccccCCCCCCeEEcccCccee
Q 045304 371 VSLEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 371 ~~~~~~~~L~~l~l~~n~l~~ 391 (540)
..+. ++|+.|++++|++..
T Consensus 583 ~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 583 EKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp SCCC--TTCCEEECCSCTTCE
T ss_pred HhHh--CcCCEEECcCCCCcc
Confidence 5443 556666666665543
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-47 Score=403.71 Aligned_cols=389 Identities=18% Similarity=0.265 Sum_probs=347.1
Q ss_pred CCCCEEeccCcccccCCCccccCCCCCCEEEcccCc--------------------------------------------
Q 045304 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNS-------------------------------------------- 45 (540)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------------------------------------- 45 (540)
.+++.|+|+++++.|.+|.+++++++|++|+|++|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 478999999999999999999999999999999884
Q ss_pred ----------------------------------CccccchhhhcCCCCCCEEEccCCccccc-----------------
Q 045304 46 ----------------------------------LSGSLSSIAGVRLPNLEVLRMRSNNFCGT----------------- 74 (540)
Q Consensus 46 ----------------------------------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 74 (540)
++| +|..+ .++++|++|+|++|.+++.
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHH-hcccCCCEEECcCCccccccccccccccccchhccc
Confidence 344 77765 7899999999999999986
Q ss_pred CCcccc--CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCcc-ccC-CCCCccccccCCCC------CCCCEEECc
Q 045304 75 IPHFIF--NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY-LTS-STSDLNFLSSLSNC------KTLTYIDLS 144 (540)
Q Consensus 75 ~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~~l~~l------~~L~~L~l~ 144 (540)
+|..++ ++++|++|++++|.+.+.+|..|+++++|++|++++|. +++ . +|..+..+ ++|++|+++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~-----lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ-----LKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHH-----HHHHHHHHHHSGGGGTCCEEECC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcccc-----chHHHHhhhccccCCCCCEEECC
Confidence 999999 99999999999999999999999999999999999998 775 3 55556554 999999999
Q ss_pred CCCCCccCCcc--ccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCC-CCeeeeeCcc
Q 045304 145 DNPLDGILPGT--SVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQK-LQGLSLADNK 221 (540)
Q Consensus 145 ~n~l~~~~~~~--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~ 221 (540)
+|.+. .+| . .++.+ ++|++|++++|.+.|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.
T Consensus 314 ~n~l~-~ip-~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 314 YNNLK-TFP-VETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp SSCCS-SCC-CHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC
T ss_pred CCcCC-ccC-chhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc
Confidence 99999 677 5 78888 799999999999999999 8999999999999999999 88888999999 9999999999
Q ss_pred ccCcCCccccCCC--CCCeEEcCCCCCccccCccCC-------CCCCCCEeeCCCCCCCCCCccc-cCCCCCcEEECCCC
Q 045304 222 LEGSIPNNICRLT--ELYELDLGSNKFSRSIPACFS-------NLASLRTLSLGSNELTSIPLTF-WNLKDILYLNFSSN 291 (540)
Q Consensus 222 ~~~~~p~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~ip~~~-~~l~~L~~L~L~~n 291 (540)
++ .+|..+..++ +|++|++++|.+++.+|..|. .+++|+.|++++|.++.+|..+ ..+++|++|+|++|
T Consensus 389 l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N 467 (636)
T 4eco_A 389 LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN 467 (636)
T ss_dssp CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS
T ss_pred Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCC
Confidence 99 7888887765 899999999999999999888 7889999999999999998864 46899999999999
Q ss_pred cccCCCccc-cccc-------cCcceEEcccceeeecCccccc--cCCCCcEEeCcCccCcccCCcccCCCCCCCEEEC-
Q 045304 292 FLTGPLPLE-IENL-------KVLVGIDFSVNNFSGVIPTTIG--SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNL- 360 (540)
Q Consensus 292 ~l~~~~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l- 360 (540)
.+. .+|.. +... ++|+.|++++|.++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++
T Consensus 468 ~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls 544 (636)
T 4eco_A 468 MLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544 (636)
T ss_dssp CCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred CCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence 999 55544 3332 39999999999999 6888886 99999999999999997 8999999999999999
Q ss_pred -----CCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCC
Q 045304 361 -----SNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGS 416 (540)
Q Consensus 361 -----~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~ 416 (540)
++|++.+.+|..+..+++|+.|++++|++ +.+|.. ....+..+++.+|+..|-.
T Consensus 545 ~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp SCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred CCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 56888999999999999999999999999 788876 3478888999999887743
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-46 Score=410.61 Aligned_cols=410 Identities=21% Similarity=0.226 Sum_probs=254.7
Q ss_pred CcccCCCCCCCEEeccCcccccCC-CccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcc--c
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVI-PTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHF--I 79 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l 79 (540)
|.+|+++++|++|+|++|...+.+ |..|.++++|++|+|++|.+++..|..+ ..+++|++|+|++|.+++..|.. +
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCccc
Confidence 344555555555555555433333 4455555555555555555553333333 45555555555555555433333 5
Q ss_pred cCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECcCccccCCCCCc---------------------cccccCCCCC-
Q 045304 80 FNASKLSLLELGDNSFSGFIP-DTFGNLRNLNKVTLYNNYLTSSTSDL---------------------NFLSSLSNCK- 136 (540)
Q Consensus 80 ~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~---------------------~~~~~l~~l~- 136 (540)
.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+..... ..+..+..++
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 555555555555555554433 34555555555555555554321100 0001111111
Q ss_pred -----CCCEEECcCCCCCccCCccccc-----------------------------------c-ccccCcEEEccCCcce
Q 045304 137 -----TLTYIDLSDNPLDGILPGTSVG-----------------------------------N-LSHSLEYFYMPNCNVS 175 (540)
Q Consensus 137 -----~L~~L~l~~n~l~~~~~~~~~~-----------------------------------~-l~~~L~~L~l~~~~~~ 175 (540)
.|+.|++++|.+.+..+..... . ...+|+.|++++|.+.
T Consensus 200 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~ 279 (844)
T 3j0a_A 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279 (844)
T ss_dssp TTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC
T ss_pred ccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccc
Confidence 1555555555444332211000 0 0135677777777777
Q ss_pred ecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCC
Q 045304 176 GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFS 255 (540)
Q Consensus 176 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 255 (540)
+..|..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+..|.
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 359 (844)
T 3j0a_A 280 SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359 (844)
T ss_dssp EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC
T ss_pred ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc
Confidence 66677777777777777777777777777777777777777777777766677777777777777777777766666777
Q ss_pred CCCCCCEeeCCCCCCCCCCc-----------------------------------------cccCCCCCcEEECCCCccc
Q 045304 256 NLASLRTLSLGSNELTSIPL-----------------------------------------TFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 256 ~l~~L~~L~l~~n~l~~ip~-----------------------------------------~~~~l~~L~~L~L~~n~l~ 294 (540)
.+++|+.|++++|.++.++. .+..+++|++|+|++|++.
T Consensus 360 ~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~ 439 (844)
T 3j0a_A 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439 (844)
T ss_dssp SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence 77777777777776665432 0113445555555555554
Q ss_pred CCCcc-ccccccCcceEEcccceee-----ecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304 295 GPLPL-EIENLKVLVGIDFSVNNFS-----GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT 368 (540)
Q Consensus 295 ~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (540)
+..+. .+..+++|+.|++++|.++ +..+..|..+++|+.|+|++|.+++..|..+..+++|+.|+|++|++++.
T Consensus 440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l 519 (844)
T 3j0a_A 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519 (844)
T ss_dssp CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence 33222 2334556666666666665 33345677888999999999999988888899999999999999999977
Q ss_pred cCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC
Q 045304 369 IPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP 417 (540)
Q Consensus 369 ~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 417 (540)
.+..+. ++|+.|++++|++++..|. .+..+...++.+||+.|+|+
T Consensus 520 ~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 520 SHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSS
T ss_pred Chhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccc
Confidence 776665 7899999999999988775 36688889999999999875
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.4e-46 Score=392.74 Aligned_cols=405 Identities=21% Similarity=0.217 Sum_probs=298.3
Q ss_pred CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304 2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN 81 (540)
Q Consensus 2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 81 (540)
+|..+. ++|++|+|++|.+++..+..|.++++|++|++++|.++ .+++..+.++++|++|++++|.+++..|..|++
T Consensus 26 ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 26 VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCC
Confidence 565554 67888888888888777778888888888888888887 444444478888888888888888777888888
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 161 (540)
+++|++|++++|.+++..+..++++++|++|++++|.+.+.. +|..+.++++|++|++++|.+.+..+ ..++.+.
T Consensus 103 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~ 177 (606)
T 3vq2_A 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK----LPAYFSNLTNLVHVDLSYNYIQTITV-NDLQFLR 177 (606)
T ss_dssp CTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCC----CCGGGGTCTTCCEEECCSSCCCEECT-TTTHHHH
T ss_pred cccCCEEEccCCccccccccccCCCCCCCEEeCCCCccccee----chHhHhhcCCCCEEEccCCcceecCh-hhhhhhh
Confidence 888888888888888777677888888888888888877531 56678888888888888888776654 3332220
Q ss_pred --------------------------ccCcEEEccCCccee---------------------------------------
Q 045304 162 --------------------------HSLEYFYMPNCNVSG--------------------------------------- 176 (540)
Q Consensus 162 --------------------------~~L~~L~l~~~~~~~--------------------------------------- 176 (540)
.+|++|++++|.+.+
T Consensus 178 ~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~ 257 (606)
T 3vq2_A 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEG 257 (606)
T ss_dssp HCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTT
T ss_pred ccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhh
Confidence 134444444443320
Q ss_pred -------------------cCCh---------------------hccCCCCCCeeeccCCccccccCc------------
Q 045304 177 -------------------GIPE---------------------EISNLTNLIIIYLGGNKLNGSIPI------------ 204 (540)
Q Consensus 177 -------------------~~~~---------------------~l~~l~~L~~L~l~~n~l~~~~~~------------ 204 (540)
.+|. .+..+++|++|++++|.+ +.+|.
T Consensus 258 l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~ 336 (606)
T 3vq2_A 258 LCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLT 336 (606)
T ss_dssp GGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEE
T ss_pred hhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeecc
Confidence 0000 223333445555555544 23331
Q ss_pred --------cccCCCCCCeeeeeCccccCc--CCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC
Q 045304 205 --------TLSKLQKLQGLSLADNKLEGS--IPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274 (540)
Q Consensus 205 --------~l~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip 274 (540)
.+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++ +|..|..+++|+.|++++|.+.+++
T Consensus 337 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 337 MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp SCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTT
T ss_pred CCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCcc
Confidence 233445555556666655544 35666777777777777777664 4577788888888888888888743
Q ss_pred --ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee-cCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304 275 --LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG-VIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351 (540)
Q Consensus 275 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 351 (540)
..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+..
T Consensus 416 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 495 (606)
T 3vq2_A 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDT 495 (606)
T ss_dssp TTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred ChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcc
Confidence 367788888999999998888888888889999999999999987 47888889999999999999999888888999
Q ss_pred CCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC-CCCC-CCCcccccCCCCCCCCC
Q 045304 352 LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFG-NFSAESFEGNELLCGSP 417 (540)
Q Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~-~~~~~~~~~n~~~c~~~ 417 (540)
+++|++|++++|++++..|..+..+++|+.|++++|+++ .+|.. ..+. ++...++.+|++.|+|+
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999999888999999999999999999988 45543 2333 47788899999999875
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-45 Score=388.81 Aligned_cols=402 Identities=21% Similarity=0.200 Sum_probs=331.4
Q ss_pred CCCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc
Q 045304 1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF 80 (540)
Q Consensus 1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 80 (540)
++|..+.. ++++|+|++|.+++..|..|+++++|++|++++|.+++..|.. +.++++|++|++++|.+++..|..++
T Consensus 26 ~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 26 EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhh-ccCccccCeeeCCCCcccccChhhhc
Confidence 36766654 7999999999999888999999999999999999998544544 48999999999999999988899999
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccc
Q 045304 81 NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL 160 (540)
Q Consensus 81 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 160 (540)
++++|++|++++|.+++..+..++++++|++|++++|.+.+... ..+..+++|++|++++|.+.+..+ ..++.+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l 176 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL-----PKGFPTEKLKVLDFQNNAIHYLSK-EDMSSL 176 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCC-----CTTCCCTTCCEEECCSSCCCEECH-HHHHTT
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCc-----ccccCCcccCEEEcccCcccccCh-hhhhhh
Confidence 99999999999999998778889999999999999999987521 223346667777766666654433 222222
Q ss_pred cc-----------------------------------------------------------------------------c
Q 045304 161 SH-----------------------------------------------------------------------------S 163 (540)
Q Consensus 161 ~~-----------------------------------------------------------------------------~ 163 (540)
. +
T Consensus 177 -~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 177 -QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp -TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred -cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 2 4
Q ss_pred CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS 243 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 243 (540)
|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 555666666666555666888899999999999998 6788889999999999999999988788899999999999999
Q ss_pred CCCccccCc-cCCCCCCCCEeeCCCCCCCCC---CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee
Q 045304 244 NKFSRSIPA-CFSNLASLRTLSLGSNELTSI---PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG 319 (540)
Q Consensus 244 n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~i---p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 319 (540)
|.+.+.+|. .+..+++|+.|++++|.++++ +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 998876655 488899999999999999884 6678889999999999999988888889999999999999999987
Q ss_pred cCcc-ccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc---cCccccCCCCCCeEEcccCcceeeCCC
Q 045304 320 VIPT-TIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT---IPVSLEKLSYLEDLNLSFNKLAGEIPR 395 (540)
Q Consensus 320 ~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~~~~L~~l~l~~n~l~~~~p~ 395 (540)
..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|++++. .+..+..+++|+.|++++|.+++..|.
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 7654 488889999999999999988888889999999999999998863 335678889999999999999887764
Q ss_pred C-CCCCCCCcccccCCCCC
Q 045304 396 G-GSFGNFSAESFEGNELL 413 (540)
Q Consensus 396 ~-~~~~~~~~~~~~~n~~~ 413 (540)
. ..+..+..+++.+|...
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~ 513 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLT 513 (606)
T ss_dssp TTTTCTTCCEEECCSSCCC
T ss_pred hhccccCCCEEECCCCccC
Confidence 3 45566777777777543
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.3e-45 Score=380.68 Aligned_cols=405 Identities=22% Similarity=0.231 Sum_probs=309.7
Q ss_pred CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304 2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN 81 (540)
Q Consensus 2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 81 (540)
+|..+. +++++|+|++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++++|.+++..|..|.+
T Consensus 22 ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp CCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred cCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 565443 47888888888888777778888888888888888887 455555578888888888888888777778888
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 161 (540)
+++|++|++++|.+++..+..++++++|++|++++|.+.... +|..+.++++|++|++++|.+.+..+ ..++.+
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l- 172 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVL- 172 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECTTSCCCEECG-GGGHHH-
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceec----ChhhhcccCCCCEEeCcCCccceecH-HHccch-
Confidence 888888888888887665556888888888888888777531 45667788888888888888776544 444444
Q ss_pred ccC----cEEEccCCccee-------------------------------------------------------------
Q 045304 162 HSL----EYFYMPNCNVSG------------------------------------------------------------- 176 (540)
Q Consensus 162 ~~L----~~L~l~~~~~~~------------------------------------------------------------- 176 (540)
.+| +.+++++|.+.+
T Consensus 173 ~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 252 (570)
T 2z63_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252 (570)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTG
T ss_pred hccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhc
Confidence 344 455555554433
Q ss_pred --------------------cCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcc-c-----
Q 045304 177 --------------------GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNN-I----- 230 (540)
Q Consensus 177 --------------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~-~----- 230 (540)
..|..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.. +
T Consensus 253 ~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~ 329 (570)
T 2z63_A 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKR 329 (570)
T ss_dssp GGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCE
T ss_pred cccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCE
Confidence 33445556677788888877776 466666555 6666666666655 33321 0
Q ss_pred --------------cCCCCCCeEEcCCCCCcccc--CccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304 231 --------------CRLTELYELDLGSNKFSRSI--PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 231 --------------~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~ 294 (540)
..+++|++|++++|.+++.. +..+..+++|++|++++|.++++|..+..+++|++|++++|.+.
T Consensus 330 L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp EEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEE
T ss_pred EeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccc
Confidence 45677777788777776543 56677788888888888888887777888889999999999888
Q ss_pred CCCc-cccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCc-ccCCcccCCCCCCCEEECCCCcCccccCcc
Q 045304 295 GPLP-LEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQ-GSIPYSIGDLISLKSLNLSNNNLSGTIPVS 372 (540)
Q Consensus 295 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (540)
+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|+.|++++|++++..|..
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 7765 56788899999999999999888888999999999999999987 578888999999999999999999888889
Q ss_pred ccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCCCC
Q 045304 373 LEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGSPN 418 (540)
Q Consensus 373 ~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~~~ 418 (540)
+..+++|+.|++++|++++..|.. ..+..+...++.+|++.|.++.
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 999999999999999998766643 4566778888999999988754
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.7e-46 Score=396.94 Aligned_cols=387 Identities=18% Similarity=0.247 Sum_probs=289.5
Q ss_pred CCCCEEeccCcccccCCCccccCCCCCCEEEc-ccCcCccc---------------------------------------
Q 045304 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEV-SNNSLSGS--------------------------------------- 49 (540)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l-~~n~l~~~--------------------------------------- 49 (540)
.+++.|+|+++++.|.+|.+++++++|++|+| ++|.+.|.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46777888888888888888888888888888 66644333
Q ss_pred -------------------------------------cchhhhcCCCCCCEEEccCCcccc-----------------cC
Q 045304 50 -------------------------------------LSSIAGVRLPNLEVLRMRSNNFCG-----------------TI 75 (540)
Q Consensus 50 -------------------------------------~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~ 75 (540)
+|..+ .++++|+.|+|++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI-QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHH-hcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 66654 678888888888888887 37
Q ss_pred Ccccc--CCCCCCEEEccCCcccccCCccccCCCCCCEEECcCcc-ccC-CCCCccccc-------cCCCCCCCCEEECc
Q 045304 76 PHFIF--NASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY-LTS-STSDLNFLS-------SLSNCKTLTYIDLS 144 (540)
Q Consensus 76 ~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-~~~-~~~~~~~~~-------~l~~l~~L~~L~l~ 144 (540)
|..++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|+ +++ . +|. .+..+++|+.|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~-----iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ-----LKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHH-----HHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccccc-----chHHHHhhhhcccccCCccEEEee
Confidence 77776 88888888888888888888888888888888888887 664 2 333 34455688888888
Q ss_pred CCCCCccCCcc--ccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCC-CCeeeeeCcc
Q 045304 145 DNPLDGILPGT--SVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQK-LQGLSLADNK 221 (540)
Q Consensus 145 ~n~l~~~~~~~--~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~ 221 (540)
+|.+. .+| . .++.+ ++|+.|++++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.
T Consensus 557 ~N~L~-~ip-~~~~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 557 YNNLE-EFP-ASASLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp SSCCC-BCC-CHHHHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred CCcCC-ccC-ChhhhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC
Confidence 88887 566 4 66677 67888888888887 777 7888888888888888887 77777777877 8888888888
Q ss_pred ccCcCCccccCCCC--CCeEEcCCCCCccccCccC---C--CCCCCCEeeCCCCCCCCCCcccc-CCCCCcEEECCCCcc
Q 045304 222 LEGSIPNNICRLTE--LYELDLGSNKFSRSIPACF---S--NLASLRTLSLGSNELTSIPLTFW-NLKDILYLNFSSNFL 293 (540)
Q Consensus 222 ~~~~~p~~~~~l~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~ip~~~~-~l~~L~~L~L~~n~l 293 (540)
++ .+|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|.++.+|..+. .+++|+.|+|++|++
T Consensus 631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 87 67777766654 8888888888877655322 2 33478888888888888777654 678888888888888
Q ss_pred cCCCcccccc--------ccCcceEEcccceeeecCccccc--cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCC-
Q 045304 294 TGPLPLEIEN--------LKVLVGIDFSVNNFSGVIPTTIG--SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSN- 362 (540)
Q Consensus 294 ~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~- 362 (540)
. .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCC
T ss_pred C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCC
Confidence 7 45544332 237888888888887 6677765 78888888888888886 677777888888888865
Q ss_pred -----CcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCC
Q 045304 363 -----NNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLC 414 (540)
Q Consensus 363 -----n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c 414 (540)
|++.+.+|..+..+++|+.|++++|++ +.+|.. ...++..+++.+|+...
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 677778888888888888888888888 677765 33567777777776543
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-45 Score=392.86 Aligned_cols=350 Identities=21% Similarity=0.239 Sum_probs=309.0
Q ss_pred CCccccCCCCCCEEEcccCcCcc-----------------ccchhh-hcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304 26 IPTKVFNVSTLKVFEVSNNSLSG-----------------SLSSIA-GVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSL 87 (540)
Q Consensus 26 ~~~~~~~l~~L~~L~l~~n~l~~-----------------~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 87 (540)
+|..|+++++|++|+|++|.+++ .+|..+ |.++++|+.|+|++|.+.+.+|..++++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 88899999999999999999997 388887 348999999999999999999999999999999
Q ss_pred EEccCCc-ccc-cCCccccCCC-------CCCEEECcCccccCCCCCccccc--cCCCCCCCCEEECcCCCCCccCCccc
Q 045304 88 LELGDNS-FSG-FIPDTFGNLR-------NLNKVTLYNNYLTSSTSDLNFLS--SLSNCKTLTYIDLSDNPLDGILPGTS 156 (540)
Q Consensus 88 L~L~~n~-~~~-~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~ 156 (540)
|++++|+ +++ .+|..+++++ +|++|++++|.++. +|. .+.++++|+.|++++|.+. .+| .
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~------ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~ 590 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE------FPASASLQKMVKLGLLDCVHNKVR-HLE--A 590 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB------CCCHHHHTTCTTCCEEECTTSCCC-BCC--C
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc------cCChhhhhcCCCCCEEECCCCCcc-cch--h
Confidence 9999998 988 7887666554 99999999999984 666 7999999999999999998 666 6
Q ss_pred cccccccCcEEEccCCcceecCChhccCCCC-CCeeeccCCccccccCccccCCCC--CCeeeeeCccccCcCCccc---
Q 045304 157 VGNLSHSLEYFYMPNCNVSGGIPEEISNLTN-LIIIYLGGNKLNGSIPITLSKLQK--LQGLSLADNKLEGSIPNNI--- 230 (540)
Q Consensus 157 ~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~l~~n~~~~~~p~~~--- 230 (540)
++.+ ++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|.+.+.+|...
T Consensus 591 ~~~L-~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l 667 (876)
T 4ecn_A 591 FGTN-VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM 667 (876)
T ss_dssp CCTT-SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred hcCC-CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence 6777 79999999999998 89999999999 999999999999 78888776654 9999999999998766432
Q ss_pred c--CCCCCCeEEcCCCCCccccCcc-CCCCCCCCEeeCCCCCCCCCCccccCC--------CCCcEEECCCCcccCCCcc
Q 045304 231 C--RLTELYELDLGSNKFSRSIPAC-FSNLASLRTLSLGSNELTSIPLTFWNL--------KDILYLNFSSNFLTGPLPL 299 (540)
Q Consensus 231 ~--~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~ip~~~~~l--------~~L~~L~L~~n~l~~~~~~ 299 (540)
. .+++|+.|++++|.++ .+|.. +..+++|+.|++++|.++.+|..+... ++|+.|+|++|++. .+|.
T Consensus 668 ~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~ 745 (876)
T 4ecn_A 668 DDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD 745 (876)
T ss_dssp TTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG
T ss_pred ccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH
Confidence 2 3458999999999998 45554 458999999999999999998865543 38999999999999 7888
Q ss_pred ccc--cccCcceEEcccceeeecCccccccCCCCcEEeCcC------ccCcccCCcccCCCCCCCEEECCCCcCccccCc
Q 045304 300 EIE--NLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGY------NRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV 371 (540)
Q Consensus 300 ~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 371 (540)
.+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|++++|++ +.+|.
T Consensus 746 ~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred HhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 887 89999999999999997 788999999999999976 788899999999999999999999999 68888
Q ss_pred cccCCCCCCeEEcccCcceeeC
Q 045304 372 SLEKLSYLEDLNLSFNKLAGEI 393 (540)
Q Consensus 372 ~~~~~~~L~~l~l~~n~l~~~~ 393 (540)
.+. ++|+.|++++|++...-
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEE
T ss_pred hhc--CCCCEEECCCCCCCccC
Confidence 765 69999999999987543
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.8e-44 Score=382.88 Aligned_cols=407 Identities=25% Similarity=0.274 Sum_probs=269.5
Q ss_pred ccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc--CC
Q 045304 5 EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF--NA 82 (540)
Q Consensus 5 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l 82 (540)
+|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..+ .++++|++|++++|.+++..+..+. .+
T Consensus 92 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 92 TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFAN 170 (680)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTT
T ss_pred hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh-cccccCCEEEccCCcccccCHHHhhcccc
Confidence 46666777777777766665555666666666666666666664333333 4555666666655555543333221 22
Q ss_pred CCCCEEEccCCcccccCC---------------------------------------------------ccccCCC--CC
Q 045304 83 SKLSLLELGDNSFSGFIP---------------------------------------------------DTFGNLR--NL 109 (540)
Q Consensus 83 ~~L~~L~L~~n~~~~~~~---------------------------------------------------~~~~~l~--~L 109 (540)
++|++|++++|.+++..| ..|..++ +|
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 333344443333333222 2222222 24
Q ss_pred CEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCc--------------------------------ccc
Q 045304 110 NKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG--------------------------------TSV 157 (540)
Q Consensus 110 ~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--------------------------------~~~ 157 (540)
++|++++|.+.+. .+..+..+++|++|++++|.+.+..+. ..+
T Consensus 251 ~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 251 TMLDLSYNNLNVV-----GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CEEECTTSCCCEE-----CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CEEECCCCCcCcc-----CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhc
Confidence 4444444444332 123344455555555555544433220 022
Q ss_pred ccccccCcEEEccCCcceecCChhccCCCCCCeeeccC----------------------------CccccccCccccCC
Q 045304 158 GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG----------------------------NKLNGSIPITLSKL 209 (540)
Q Consensus 158 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~----------------------------n~l~~~~~~~l~~l 209 (540)
..+ ++|++|++++|.+.+..+..+..+++|++|++++ |++++..|..+..+
T Consensus 326 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 326 QWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred ccC-CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 233 4566666666666666565566665555555544 44444555666677
Q ss_pred CCCCeeeeeCccccCcCC-ccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCC---CCCccccCCCCCcE
Q 045304 210 QKLQGLSLADNKLEGSIP-NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT---SIPLTFWNLKDILY 285 (540)
Q Consensus 210 ~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~ip~~~~~l~~L~~ 285 (540)
++|+.|++++|.+.+.+| ..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.++ .+|..+..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 777777777777766555 56777777777777777777777777777888888888887765 36778888999999
Q ss_pred EECCCCcccCCCccccccccCcceEEcccceeeecCc--------cccccCCCCcEEeCcCccCcccCCcccCCCCCCCE
Q 045304 286 LNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP--------TTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS 357 (540)
Q Consensus 286 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (540)
|++++|++++..+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.++...+..|.++++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 9999999998888888999999999999999886522 23678899999999999999555567899999999
Q ss_pred EECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC-C-CCCCCCcccccCCCCCCCCCC
Q 045304 358 LNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-G-SFGNFSAESFEGNELLCGSPN 418 (540)
Q Consensus 358 L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~-~~~~~~~~~~~~n~~~c~~~~ 418 (540)
|++++|++++..+..|..+++|+.|++++|++++..|.. . .+.++...++.+||+.|+|+.
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999777777889999999999999998765532 1 456788899999999999863
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.3e-44 Score=377.51 Aligned_cols=384 Identities=21% Similarity=0.181 Sum_probs=309.2
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA 82 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 82 (540)
|.+|+++++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..+ .++++|++|++++|.+++..+..++++
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l 127 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF-SGLTSLENLVAVETKLASLESFPIGQL 127 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS-TTCTTCCEEECTTSCCCCSSSSCCTTC
T ss_pred hhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc-CCcccCCEEEccCCccccccccccCCC
Confidence 3468888899999999888888778888888899999998888885445544 788888888888888887776778888
Q ss_pred CCCCEEEccCCcccc-cCCccccCCCCCCEEECcCccccCCCCCc----------------------cccc---------
Q 045304 83 SKLSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDL----------------------NFLS--------- 130 (540)
Q Consensus 83 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----------------------~~~~--------- 130 (540)
++|++|++++|.+.+ .+|..|+++++|++|++++|.+++..... .++.
T Consensus 128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~ 207 (606)
T 3vq2_A 128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceee
Confidence 888888888888875 46888888888888888888776542210 0000
Q ss_pred --------------------------------------------------------------------------------
Q 045304 131 -------------------------------------------------------------------------------- 130 (540)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (540)
T Consensus 208 ~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L 287 (606)
T 3vq2_A 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287 (606)
T ss_dssp EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTC
T ss_pred eeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCC
Confidence
Q ss_pred --------------cCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCC
Q 045304 131 --------------SLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGN 196 (540)
Q Consensus 131 --------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 196 (540)
.+..+++|+.|++++|.+ +.+| . + .+ ++|++|++++|...+.+ .+..+++|++|++++|
T Consensus 288 ~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~-~-~l-~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-T-L-DL-PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRN 360 (606)
T ss_dssp SEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-C-C-CC-SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSS
T ss_pred CEEEecCccchhhhhccccccCCEEEcccccC-cccc-c-C-CC-CccceeeccCCcCccch--hhccCCCCCEEECcCC
Confidence 112222333334444433 2222 1 1 22 45555555555433333 4567788888889988
Q ss_pred ccccc--cCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccC-ccCCCCCCCCEeeCCCCCCCC-
Q 045304 197 KLNGS--IPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTS- 272 (540)
Q Consensus 197 ~l~~~--~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~- 272 (540)
.+++. +|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|.+.+..| ..|..+++|+.|++++|.+++
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 88865 37888999999999999999985 66889999999999999999998877 689999999999999999998
Q ss_pred CCccccCCCCCcEEECCCCcccC-CCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304 273 IPLTFWNLKDILYLNFSSNFLTG-PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351 (540)
Q Consensus 273 ip~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 351 (540)
.|..+..+++|++|++++|.+.+ .+|..+..+++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+..
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 519 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTT
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccC
Confidence 67789999999999999999998 47888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEECCCCcCccccCccccCCC-CCCeEEcccCcceeeCCCC
Q 045304 352 LISLKSLNLSNNNLSGTIPVSLEKLS-YLEDLNLSFNKLAGEIPRG 396 (540)
Q Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~l~~~~p~~ 396 (540)
+++|+.|++++|+++ .+|..+..++ +|+.+++++|++.+..+..
T Consensus 520 l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 520 LYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp CTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred CCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999999 6777788887 6999999999999877753
No 14
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.4e-43 Score=374.18 Aligned_cols=381 Identities=24% Similarity=0.269 Sum_probs=200.9
Q ss_pred ccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCC
Q 045304 5 EIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASK 84 (540)
Q Consensus 5 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 84 (540)
+|+++++|++|+|++|.+++..|..|+++++|++|++++|.++ .+|...+..+++|++|++++|.+++..|..++++++
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 4666667777777777666666666666777777777776666 555554466677777777777666555566666777
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCcccccc--CCCCCCCCEEECcCCCCCccCCc--------
Q 045304 85 LSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSS--LSNCKTLTYIDLSDNPLDGILPG-------- 154 (540)
Q Consensus 85 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~-------- 154 (540)
|++|++++|.+++..+..++++++|++|++++|.+++... .. ...+++|+.|++++|.+.+..+.
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS-----EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH-----HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH-----HHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 7777777776666666666667777777776666655311 11 12334555555555555444331
Q ss_pred ------------------------------------------ccccccc-ccCcEEEccCCcceecCChhccCCCCCCee
Q 045304 155 ------------------------------------------TSVGNLS-HSLEYFYMPNCNVSGGIPEEISNLTNLIII 191 (540)
Q Consensus 155 ------------------------------------------~~~~~l~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 191 (540)
..+..+. ++|++|++++|.+.+..|..+..+++|++|
T Consensus 198 ~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (680)
T 1ziw_A 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277 (680)
T ss_dssp CEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred hhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEe
Confidence 1111110 124444444444444444444444444444
Q ss_pred eccCCccccccCccccCCCCCCeeeeeCccccC-----cCCc----cccCCCCCCeEEcCCCCCccccCccCCCCCCCCE
Q 045304 192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEG-----SIPN----NICRLTELYELDLGSNKFSRSIPACFSNLASLRT 262 (540)
Q Consensus 192 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-----~~p~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 262 (540)
++++|.+.+..|..+..+++|+.|++++|...+ .+|. .|..+++|++|++++|.+++..+..|..+++|++
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (680)
T 1ziw_A 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357 (680)
T ss_dssp ECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred eCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcE
Confidence 444444444444444444444444444332221 1121 3455566666666666666666666666666666
Q ss_pred eeCCCCCCCC--CCc-cccC--CCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCc-cccccCCCCcEEeC
Q 045304 263 LSLGSNELTS--IPL-TFWN--LKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP-TTIGSLKGLQYLFV 336 (540)
Q Consensus 263 L~l~~n~l~~--ip~-~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l 336 (540)
|++++|.+.. ++. .+.. .++|+.|++++|++.+..|..+..+++|+.|++++|.+++.+| ..+..+++|++|++
T Consensus 358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 6665554321 211 1111 1234444444444444444455555555555555555554433 34445555555555
Q ss_pred cCccCccc--------------------------CCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcce
Q 045304 337 GYNRLQGS--------------------------IPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA 390 (540)
Q Consensus 337 ~~n~l~~~--------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~ 390 (540)
++|.+++. +|..+..+++|+.|++++|++++..+..+..+++|+.|++++|+++
T Consensus 438 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp CSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred CCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 55544433 4444555555555555555555444444555555555555555554
Q ss_pred e
Q 045304 391 G 391 (540)
Q Consensus 391 ~ 391 (540)
+
T Consensus 518 ~ 518 (680)
T 1ziw_A 518 R 518 (680)
T ss_dssp G
T ss_pred c
Confidence 3
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=371.41 Aligned_cols=383 Identities=23% Similarity=0.282 Sum_probs=321.6
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA 82 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 82 (540)
|.+|.++++|++|+|++|.+++..+..|.++++|++|++++|.++ .++...+.++++|++|++++|.+++..+..++++
T Consensus 45 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 123 (570)
T 2z63_A 45 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123 (570)
T ss_dssp TTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTC
T ss_pred hhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCcccccc
Confidence 457899999999999999999888889999999999999999998 5555555899999999999999986666679999
Q ss_pred CCCCEEEccCCcccc-cCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC----CEEECcCCCCCccCCc---
Q 045304 83 SKLSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL----TYIDLSDNPLDGILPG--- 154 (540)
Q Consensus 83 ~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~--- 154 (540)
++|++|++++|.+.+ .+|..|+++++|++|++++|.++.. .+..+..+++| +.+++++|.+.+..+.
T Consensus 124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~ 198 (570)
T 2z63_A 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-----YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198 (570)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-----CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT
T ss_pred ccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-----cHHHccchhccchhhhhcccCCCCceecCHHHhc
Confidence 999999999999987 4688999999999999999988765 22334444444 5556555554433220
Q ss_pred -----------------------------------------------------------------------------ccc
Q 045304 155 -----------------------------------------------------------------------------TSV 157 (540)
Q Consensus 155 -----------------------------------------------------------------------------~~~ 157 (540)
..+
T Consensus 199 ~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~ 278 (570)
T 2z63_A 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278 (570)
T ss_dssp TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTT
T ss_pred cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhh
Confidence 222
Q ss_pred ccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCcc-c-------------------cCCCCCCeeee
Q 045304 158 GNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPIT-L-------------------SKLQKLQGLSL 217 (540)
Q Consensus 158 ~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l-------------------~~l~~L~~L~l 217 (540)
..+ ++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.. + ..+++|++|++
T Consensus 279 ~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l 354 (570)
T 2z63_A 279 NCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354 (570)
T ss_dssp GGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEEC
T ss_pred cCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeC
Confidence 334 68999999999887 577777777 7777777777766 33321 1 46788889999
Q ss_pred eCccccCcC--CccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC--ccccCCCCCcEEECCCCcc
Q 045304 218 ADNKLEGSI--PNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP--LTFWNLKDILYLNFSSNFL 293 (540)
Q Consensus 218 ~~n~~~~~~--p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip--~~~~~l~~L~~L~L~~n~l 293 (540)
++|.+++.. |..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+++++ ..+..+++|++|++++|.+
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 433 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC
T ss_pred cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc
Confidence 988887543 67788999999999999999876555 899999999999999998854 3688999999999999999
Q ss_pred cCCCccccccccCcceEEcccceee-ecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCcc
Q 045304 294 TGPLPLEIENLKVLVGIDFSVNNFS-GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS 372 (540)
Q Consensus 294 ~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (540)
.+..|..+..+++|+.|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..
T Consensus 434 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 513 (570)
T 2z63_A 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513 (570)
T ss_dssp EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHH
Confidence 9999999999999999999999998 578999999999999999999999998999999999999999999999888888
Q ss_pred ccCCCCCCeEEcccCcceeeCCCC
Q 045304 373 LEKLSYLEDLNLSFNKLAGEIPRG 396 (540)
Q Consensus 373 ~~~~~~L~~l~l~~n~l~~~~p~~ 396 (540)
+..+++|+.+++++|+++|.+|..
T Consensus 514 ~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 514 FDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hhcccCCcEEEecCCcccCCCcch
Confidence 999999999999999999998864
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.5e-43 Score=366.05 Aligned_cols=395 Identities=22% Similarity=0.239 Sum_probs=288.7
Q ss_pred CCCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc
Q 045304 1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF 80 (540)
Q Consensus 1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 80 (540)
++|..+. ++|++|+|++|++++..|..|.++++|++|++++|.+++ ++...+..+++|++|++++|.+++..+..++
T Consensus 19 ~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhc
Confidence 3566554 688999999999888878888889999999999998884 4444447888999999999988877777788
Q ss_pred CCCCCCEEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCcccc-ccCCCCCCCCEEECcCCCCCccCCccccc
Q 045304 81 NASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFL-SSLSNCKTLTYIDLSDNPLDGILPGTSVG 158 (540)
Q Consensus 81 ~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 158 (540)
++++|++|++++|.+++. .|..++++++|++|++++|.+.+. ++ ..+.++++|++|++++|.+.+..| ..++
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~ 169 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE-----IRRIDFAGLTSLNELEIKALSLRNYQS-QSLK 169 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-----ECTTTTTTCCEEEEEEEEETTCCEECT-TTTT
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc-----cCHhhhhcccccCeeeccCCcccccCh-hhhh
Confidence 889999999999888763 567788888999999988874332 22 457788888888888888887666 4555
Q ss_pred cccccCcEEEccCCcceecCChh-ccCCCCCCeeeccCCccccc---------------------------cCc----c-
Q 045304 159 NLSHSLEYFYMPNCNVSGGIPEE-ISNLTNLIIIYLGGNKLNGS---------------------------IPI----T- 205 (540)
Q Consensus 159 ~l~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~---------------------------~~~----~- 205 (540)
.+ .+|++|+++.|.+.. +|.. +..+++|++|++++|++++. .+. .
T Consensus 170 ~l-~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 170 SI-RDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TC-SEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred cc-ccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 44 344444444444321 1211 12334444444444443321 000 0
Q ss_pred ----------------------------------------------------------ccCCCCCCeeeeeCccccCcCC
Q 045304 206 ----------------------------------------------------------LSKLQKLQGLSLADNKLEGSIP 227 (540)
Q Consensus 206 ----------------------------------------------------------l~~l~~L~~L~l~~n~~~~~~p 227 (540)
+...++|+.|++++|.+. .+|
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip 326 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP 326 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCC
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCC
Confidence 011234556666666655 456
Q ss_pred ccc-cCCCCCCeEEcCCCCCccccC---ccCCCCCCCCEeeCCCCCCCCCC---ccccCCCCCcEEECCCCcccCCCccc
Q 045304 228 NNI-CRLTELYELDLGSNKFSRSIP---ACFSNLASLRTLSLGSNELTSIP---LTFWNLKDILYLNFSSNFLTGPLPLE 300 (540)
Q Consensus 228 ~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~ip---~~~~~l~~L~~L~L~~n~l~~~~~~~ 300 (540)
..+ ..+++|++|++++|.+++.+| ..++.+++|++|++++|.+++++ ..+..+++|++|++++|++. .+|..
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 405 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSC
T ss_pred HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChh
Confidence 554 468899999999999887664 34778889999999999998865 35778899999999999888 67778
Q ss_pred cccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCC
Q 045304 301 IENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLE 380 (540)
Q Consensus 301 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 380 (540)
+..+++|++|++++|.+++ +|..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|+
T Consensus 406 ~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~ 476 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLL 476 (549)
T ss_dssp CCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCC
T ss_pred hcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCC
Confidence 8888899999999998874 34333 258999999999988643 57889999999999998 6665 46789999
Q ss_pred eEEcccCcceeeCCC-CCCCCCCCcccccCCCCCCCCC
Q 045304 381 DLNLSFNKLAGEIPR-GGSFGNFSAESFEGNELLCGSP 417 (540)
Q Consensus 381 ~l~l~~n~l~~~~p~-~~~~~~~~~~~~~~n~~~c~~~ 417 (540)
.|++++|++++..|. ...+..+...++.+|++.|.|+
T Consensus 477 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999987765 2556778888999999988764
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.8e-42 Score=352.83 Aligned_cols=356 Identities=21% Similarity=0.232 Sum_probs=225.8
Q ss_pred CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccC-CccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304 34 STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTI-PHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKV 112 (540)
Q Consensus 34 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 112 (540)
++|++|++++|.+++..|..+ .++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 445555555555542222222 44555555555555444322 2334455555555555555554444455555555555
Q ss_pred ECcCccccCCCCCcccccc--CCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCC--CCC
Q 045304 113 TLYNNYLTSSTSDLNFLSS--LSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNL--TNL 188 (540)
Q Consensus 113 ~l~~n~~~~~~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l--~~L 188 (540)
++++|.+++. .+.. +..+++|++|++++|.+.+..|...+..+ ++|++|++++|.+.+..+..+..+ .+|
T Consensus 109 ~L~~n~l~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 109 TLTQCNLDGA-----VLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-RRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp ECTTSCCBTH-----HHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC-TTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred eCCCCCCCcc-----ccCcccccCcccCCEEECCCCccCccCcccccCCC-CcccEEeCCCCcccccChhhhhccccccc
Confidence 5555544432 1111 44455555555555555544442224444 455555555555554444444443 445
Q ss_pred CeeeccCCccccccCcc--------ccCCCCCCeeeeeCccccCcCCccccCC---CCCCeEEcCCCCCccc--------
Q 045304 189 IIIYLGGNKLNGSIPIT--------LSKLQKLQGLSLADNKLEGSIPNNICRL---TELYELDLGSNKFSRS-------- 249 (540)
Q Consensus 189 ~~L~l~~n~l~~~~~~~--------l~~l~~L~~L~l~~n~~~~~~p~~~~~l---~~L~~L~l~~n~l~~~-------- 249 (540)
+.|++++|.+.+..+.. +..+++|++|++++|.+.+..|..+... ++|+.|++++|...+.
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 262 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSC
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhc
Confidence 55555555555333222 1234556666666665555554444332 5556666665543321
Q ss_pred --cCccCCC--CCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccc
Q 045304 250 --IPACFSN--LASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTT 324 (540)
Q Consensus 250 --~~~~~~~--l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 324 (540)
.+..+.. .++|+.|++++|.+++ .|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..
T Consensus 263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence 1122222 3688999999999888 5667888899999999999999888888999999999999999998888889
Q ss_pred cccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC
Q 045304 325 IGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG 396 (540)
Q Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~ 396 (540)
+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.+|..
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 999999999999999999888999999999999999999999777777889999999999999999988853
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-43 Score=365.13 Aligned_cols=395 Identities=21% Similarity=0.256 Sum_probs=287.0
Q ss_pred CCCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCcccc
Q 045304 1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF 80 (540)
Q Consensus 1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 80 (540)
++|..+. ++|++|+|++|.+++..|..|.++++|++|++++|.+++..|..+ ..+++|++|++++|.++ .+|..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~-~lp~~-- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLV-KISCH-- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCCC-EEECC--
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCcee-ecCcc--
Confidence 3676666 789999999999987777889999999999999999885445444 78999999999999888 56655
Q ss_pred CCCCCCEEEccCCcccc-cCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC--CEEECcCCCC--CccCCcc
Q 045304 81 NASKLSLLELGDNSFSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL--TYIDLSDNPL--DGILPGT 155 (540)
Q Consensus 81 ~l~~L~~L~L~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~ 155 (540)
.+++|++|++++|.+++ .+|..|+++++|++|++++|.+.+. .+..+++| +.|++++|.+ .+..| .
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L~l~~n~l~~~~~~~-~ 158 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--------SVLPIAHLNISKVLLVLGETYGEKEDP-E 158 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--------GGGGGTTSCEEEEEEEECTTTTSSCCT-T
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--------hccccccceeeEEEeeccccccccccc-c
Confidence 78899999999999887 4678899999999999999887652 24555666 8888888877 55444 3
Q ss_pred cccccc-------------------------ccCcEEEccCCc-------ceecCChhccCCCCCCeeeccCCccccccC
Q 045304 156 SVGNLS-------------------------HSLEYFYMPNCN-------VSGGIPEEISNLTNLIIIYLGGNKLNGSIP 203 (540)
Q Consensus 156 ~~~~l~-------------------------~~L~~L~l~~~~-------~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 203 (540)
.+..+. ++|+.+++++|. +.+.+| .+..+++|+.|++++|.+++..+
T Consensus 159 ~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~ 237 (520)
T 2z7x_B 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSF 237 (520)
T ss_dssp TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHH
T ss_pred cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHH
Confidence 333321 345555555544 333333 34444544444444444332211
Q ss_pred cccc---CCCCCCeeeeeCccccCcCCccc-----cCCCC--------------------------CCeEEcCCCCCccc
Q 045304 204 ITLS---KLQKLQGLSLADNKLEGSIPNNI-----CRLTE--------------------------LYELDLGSNKFSRS 249 (540)
Q Consensus 204 ~~l~---~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~--------------------------L~~L~l~~n~l~~~ 249 (540)
..+. ..++|++|++++|.+.|.+|..+ ..+++ |+.|++++|.+...
T Consensus 238 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~ 317 (520)
T 2z7x_B 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317 (520)
T ss_dssp HHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC
T ss_pred HHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc
Confidence 1110 12355555555555555555544 44444 55555555554322
Q ss_pred cCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccC--CCccccccccCcceEEcccceeeecCcc-cc
Q 045304 250 IPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTG--PLPLEIENLKVLVGIDFSVNNFSGVIPT-TI 325 (540)
Q Consensus 250 ~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~ 325 (540)
. .+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|.+++.+|. .+
T Consensus 318 ~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 318 L--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp C--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred c--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence 1 12678899999999999998 78888899999999999999986 5667788999999999999999985555 47
Q ss_pred ccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC--CCCCCCC
Q 045304 326 GSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG--GSFGNFS 403 (540)
Q Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~--~~~~~~~ 403 (540)
..+++|++|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. ..+..+.
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence 8889999999999999888777664 78999999999999 78887779999999999999998 46643 4456777
Q ss_pred cccccCCCCCCCCC
Q 045304 404 AESFEGNELLCGSP 417 (540)
Q Consensus 404 ~~~~~~n~~~c~~~ 417 (540)
..++.+|++.|.|+
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 88899999988763
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-42 Score=360.46 Aligned_cols=377 Identities=21% Similarity=0.256 Sum_probs=298.0
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccc-cCCccccC
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCG-TIPHFIFN 81 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~ 81 (540)
|.+|+++++|++|+|++|++++..|..|+.+++|++|++++|.++ .++...+..+++|++|++++|.+++ ..|..+++
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 121 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence 677999999999999999999888899999999999999999998 4555545899999999999999986 45778999
Q ss_pred CCCCCEEEccCCcccccC-CccccCCCCCCEEECcCccccCCCCCccccccCC------------------------CCC
Q 045304 82 ASKLSLLELGDNSFSGFI-PDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLS------------------------NCK 136 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~------------------------~l~ 136 (540)
+++|++|++++|.+.+.+ +..|.++++|++|++++|.+++. .+..+. .++
T Consensus 122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 196 (549)
T 2z81_A 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-----QSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196 (549)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-----CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTT
T ss_pred cCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-----ChhhhhccccCceEecccCcccccchhhHhhcc
Confidence 999999999999844444 46899999999999999988874 233333 356
Q ss_pred CCCEEECcCCCCCccCC-ccccccccccCcEEEccCCcceecCCh-----------------------------------
Q 045304 137 TLTYIDLSDNPLDGILP-GTSVGNLSHSLEYFYMPNCNVSGGIPE----------------------------------- 180 (540)
Q Consensus 137 ~L~~L~l~~n~l~~~~~-~~~~~~l~~~L~~L~l~~~~~~~~~~~----------------------------------- 180 (540)
+|++|++++|.+.+... ...+.....+|+.|++++|.+.+..+.
T Consensus 197 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276 (549)
T ss_dssp TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTC
T ss_pred cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhh
Confidence 67777777777665310 011111113344444433333221110
Q ss_pred ----------------------------hccCCCCCCeeeccCCccccccCccc-cCCCCCCeeeeeCccccCcCCc---
Q 045304 181 ----------------------------EISNLTNLIIIYLGGNKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPN--- 228 (540)
Q Consensus 181 ----------------------------~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~--- 228 (540)
.....++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|.
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 355 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHT
T ss_pred hhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchh
Confidence 0112346777778888776 566655 5799999999999999987643
Q ss_pred cccCCCCCCeEEcCCCCCccccC--ccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccC
Q 045304 229 NICRLTELYELDLGSNKFSRSIP--ACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKV 306 (540)
Q Consensus 229 ~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 306 (540)
.++.+++|++|++++|++++..+ ..+..+++|++|++++|.++.+|..+..+++|++|++++|.+.+ +|..+ .++
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~ 432 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQT 432 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTT
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchh--cCC
Confidence 47889999999999999986533 45888999999999999999999999999999999999999874 34333 268
Q ss_pred cceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304 307 LVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF 386 (540)
Q Consensus 307 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 386 (540)
|+.|++++|++++.+ ..+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+.+++++
T Consensus 433 L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 433 LEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp CSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 999999999998753 57899999999999998 6775 46789999999999999999898899999999999999
Q ss_pred CcceeeCCC
Q 045304 387 NKLAGEIPR 395 (540)
Q Consensus 387 n~l~~~~p~ 395 (540)
|++.|.+|.
T Consensus 507 N~~~~~~~~ 515 (549)
T 2z81_A 507 NPWDCSCPR 515 (549)
T ss_dssp SCBCCCHHH
T ss_pred CCccCCCcc
Confidence 999988773
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=371.26 Aligned_cols=385 Identities=20% Similarity=0.172 Sum_probs=315.9
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchh-hhcCCCCCCEEEccCCcccccCC-cccc
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSI-AGVRLPNLEVLRMRSNNFCGTIP-HFIF 80 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-~~l~ 80 (540)
|.+|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|.. .+..+++|++|+|++|.+++..+ ..++
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~ 145 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFG 145 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHh
Confidence 677999999999999999999888999999999999999999998766554 45789999999999999987655 5789
Q ss_pred CCCCCCEEEccCCcccccCCccccCC--CC------------------------------CCEEECcCccccCCCCCccc
Q 045304 81 NASKLSLLELGDNSFSGFIPDTFGNL--RN------------------------------LNKVTLYNNYLTSSTSDLNF 128 (540)
Q Consensus 81 ~l~~L~~L~L~~n~~~~~~~~~~~~l--~~------------------------------L~~L~l~~n~~~~~~~~~~~ 128 (540)
++++|++|++++|.+++..+..+..+ ++ |++|++++|.+....... +
T Consensus 146 ~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~ 224 (844)
T 3j0a_A 146 KLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN-F 224 (844)
T ss_dssp TCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSG-G
T ss_pred hCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHH-H
Confidence 99999999999998877666555433 33 566666666443321100 0
Q ss_pred c--------------------------------ccCCC--CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcc
Q 045304 129 L--------------------------------SSLSN--CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174 (540)
Q Consensus 129 ~--------------------------------~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 174 (540)
. ..+.. .++|+.|++++|.+.+..+ ..+..+ ++|+.|++++|.+
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l-~~L~~L~L~~n~i 302 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-RVFETL-KDLKVLNLAYNKI 302 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS-CCSSSC-CCCCEEEEESCCC
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh-hhhhcC-CCCCEEECCCCcC
Confidence 0 01112 2689999999999888766 667777 7899999999999
Q ss_pred eecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc----
Q 045304 175 SGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI---- 250 (540)
Q Consensus 175 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~---- 250 (540)
.+..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 303 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 382 (844)
T 3j0a_A 303 NKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS 382 (844)
T ss_dssp CEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCS
T ss_pred CCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCC
Confidence 9888888999999999999999998888888999999999999999998777778888999999999888876421
Q ss_pred --------------Cc----------------------cCCCCCCCCEeeCCCCCCCCCCc--cccCCCCCcEEECCCCc
Q 045304 251 --------------PA----------------------CFSNLASLRTLSLGSNELTSIPL--TFWNLKDILYLNFSSNF 292 (540)
Q Consensus 251 --------------~~----------------------~~~~l~~L~~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~ 292 (540)
|. .+..+++|+.|++++|.+++++. .+..+++|+.|++++|.
T Consensus 383 L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 383 IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp CSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred cchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCc
Confidence 11 12367899999999999998544 35678999999999999
Q ss_pred cc-----CCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 293 LT-----GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 293 l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
+. +..+..+..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++++
T Consensus 463 l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLA 540 (844)
T ss_dssp CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCC
T ss_pred cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCC
Confidence 97 44556788999999999999999999999999999999999999999987776665 899999999999999
Q ss_pred ccCccccCCCCCCeEEcccCcceeeCCC
Q 045304 368 TIPVSLEKLSYLEDLNLSFNKLAGEIPR 395 (540)
Q Consensus 368 ~~~~~~~~~~~L~~l~l~~n~l~~~~p~ 395 (540)
..|..+ ++|+.+++++|++.|.++.
T Consensus 541 ~~~~~~---~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 541 PNPDVF---VSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred CChhHh---CCcCEEEecCCCccccccc
Confidence 988765 4789999999999987764
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-42 Score=356.56 Aligned_cols=375 Identities=21% Similarity=0.277 Sum_probs=300.1
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccc-cCCccccC
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCG-TIPHFIFN 81 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~ 81 (540)
|.+|.++++|++|+|++|++++..|..|+++++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..+++
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~ 113 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGN 113 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGG
T ss_pred hhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCCccccccchhhhcc
Confidence 357999999999999999999888999999999999999999998 78876 79999999999999997 57899999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCC--CEEECcCccc--cCCCCC-cc--------------------ccccCCCCC
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNL--NKVTLYNNYL--TSSTSD-LN--------------------FLSSLSNCK 136 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L--~~L~l~~n~~--~~~~~~-~~--------------------~~~~l~~l~ 136 (540)
+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+.... +. ....+.+++
T Consensus 114 l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~ 190 (520)
T 2z7x_B 114 MSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190 (520)
T ss_dssp CTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS
T ss_pred CCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc
Confidence 9999999999999986 457777888 9999999988 332110 00 001233456
Q ss_pred CCCEEECcCCC-------CCccCCccccccc--------------------------cccCcEEEccCCcceecCChhc-
Q 045304 137 TLTYIDLSDNP-------LDGILPGTSVGNL--------------------------SHSLEYFYMPNCNVSGGIPEEI- 182 (540)
Q Consensus 137 ~L~~L~l~~n~-------l~~~~~~~~~~~l--------------------------~~~L~~L~l~~~~~~~~~~~~l- 182 (540)
+|+.+++++|. +.+.++ .++.+ .++|++|++++|.+.|.+|..+
T Consensus 191 ~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 268 (520)
T 2z7x_B 191 NLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268 (520)
T ss_dssp EEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCC
T ss_pred ceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchh
Confidence 66666666654 222211 12222 0267777777777777777766
Q ss_pred ----cCCCCCCeeeccCCccccccC-ccccCC---CCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccC
Q 045304 183 ----SNLTNLIIIYLGGNKLNGSIP-ITLSKL---QKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACF 254 (540)
Q Consensus 183 ----~~l~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 254 (540)
..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|.+++.+|..+
T Consensus 269 ~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~ 344 (520)
T 2z7x_B 269 DYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC 344 (520)
T ss_dssp CCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred hcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence 6777777777777766 344 333333 56888888888776432 12688999999999999999899999
Q ss_pred CCCCCCCEeeCCCCCCCC---CCccccCCCCCcEEECCCCcccCCCcc-ccccccCcceEEcccceeeecCccccccCCC
Q 045304 255 SNLASLRTLSLGSNELTS---IPLTFWNLKDILYLNFSSNFLTGPLPL-EIENLKVLVGIDFSVNNFSGVIPTTIGSLKG 330 (540)
Q Consensus 255 ~~l~~L~~L~l~~n~l~~---ip~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 330 (540)
..+++|+.|++++|.+++ +|..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.+++..|..+. ++
T Consensus 345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 999999999999999996 456788999999999999999986665 478899999999999999988877665 79
Q ss_pred CcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCcc-ccCCCCCCeEEcccCcceeeCC
Q 045304 331 LQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS-LEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~l~l~~n~l~~~~p 394 (540)
|+.|++++|+++ .+|..+..+++|++|++++|+++. +|.. +..+++|+.+++++|++.|.++
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 999999999999 788888899999999999999994 5554 8899999999999999998765
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6.6e-40 Score=348.49 Aligned_cols=407 Identities=21% Similarity=0.246 Sum_probs=298.9
Q ss_pred CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304 2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN 81 (540)
Q Consensus 2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 81 (540)
||..+. +++++|+|++|++++..+.+|.++++|++|+|++|.++ .+++.+|.++++|++|+|++|++++..+..|.+
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 565443 48999999999999887889999999999999999998 688777789999999999999999777788999
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccc-
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL- 160 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l- 160 (540)
+++|++|++++|.+++..+..|+++++|++|++++|.+.... .+..+..+++|++|++++|.+.+..+ ..+..+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~ 197 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLH 197 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHH
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCC----CchhhccchhhhhhcccCcccccccc-ccccchh
Confidence 999999999999999877788999999999999999987642 45678889999999999999887655 333221
Q ss_pred --cccCcEEEccCCcceecCCh----------------------------------------------------------
Q 045304 161 --SHSLEYFYMPNCNVSGGIPE---------------------------------------------------------- 180 (540)
Q Consensus 161 --~~~L~~L~l~~~~~~~~~~~---------------------------------------------------------- 180 (540)
......++++.|.+....+.
T Consensus 198 ~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 198 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 11122333333322211100
Q ss_pred ---------------------------------------------hccCCCCCCeeeccCCccccccCcc----------
Q 045304 181 ---------------------------------------------EISNLTNLIIIYLGGNKLNGSIPIT---------- 205 (540)
Q Consensus 181 ---------------------------------------------~l~~l~~L~~L~l~~n~l~~~~~~~---------- 205 (540)
.+.....++.|++.+|.+.+..+..
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~ 357 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 357 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEE
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccc
Confidence 0111223333333333332211110
Q ss_pred ---------ccCCCCCCeeeeeCcccc--CcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC-
Q 045304 206 ---------LSKLQKLQGLSLADNKLE--GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI- 273 (540)
Q Consensus 206 ---------l~~l~~L~~L~l~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i- 273 (540)
...+++|+.++++.|.+. +..+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+.....
T Consensus 358 ~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 358 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp SCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTT
T ss_pred cccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccc
Confidence 112233333333333321 1122223333344444444443332 334566677888888887766552
Q ss_pred C-ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee-ecCccccccCCCCcEEeCcCccCcccCCcccCC
Q 045304 274 P-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS-GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD 351 (540)
Q Consensus 274 p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 351 (540)
+ ..+..+++++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.+
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 2 35678889999999999999888999999999999999999854 457888999999999999999999999999999
Q ss_pred CCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCC-CC-CCCCcccccCCCCCCCCC
Q 045304 352 LISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGG-SF-GNFSAESFEGNELLCGSP 417 (540)
Q Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~-~~-~~~~~~~~~~n~~~c~~~ 417 (540)
+++|++|+|++|++++..|..|..+++|+.|++++|++++..|..- .+ .+++.+++.+||+.|+|.
T Consensus 517 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999989999999999999999999998877542 22 567889999999999873
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.6e-40 Score=345.46 Aligned_cols=391 Identities=20% Similarity=0.210 Sum_probs=215.4
Q ss_pred CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304 2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN 81 (540)
Q Consensus 2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 81 (540)
+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|.+++ ++...+..+++|++|++++|.++ .+|.. .
T Consensus 46 ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~ 119 (562)
T 3a79_B 46 VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ-NISCC--P 119 (562)
T ss_dssp CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC-EECSC--C
T ss_pred CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC-ccCcc--c
Confidence 555443 677888888888876666777788888888888887774 43333467788888888888777 45554 6
Q ss_pred CCCCCEEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC--CEEECcCCCC--CccCCccc
Q 045304 82 ASKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL--TYIDLSDNPL--DGILPGTS 156 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~~ 156 (540)
+++|++|++++|.+++. .|..|+++++|++|++++|.+... .+..+++| +.|++++|.+ .+..+ ..
T Consensus 120 l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--------~~~~l~~L~L~~L~L~~n~l~~~~~~~-~~ 190 (562)
T 3a79_B 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--------DLLPVAHLHLSCILLDLVSYHIKGGET-ES 190 (562)
T ss_dssp CTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--------TTGGGTTSCEEEEEEEESSCCCCSSSC-CE
T ss_pred cccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--------chhhhhhceeeEEEeecccccccccCc-cc
Confidence 77888888888877763 356777788888888888777652 13333444 7777777777 55444 33
Q ss_pred ccccc-------------------------ccCcEEEccCCc----------------------------cee----cCC
Q 045304 157 VGNLS-------------------------HSLEYFYMPNCN----------------------------VSG----GIP 179 (540)
Q Consensus 157 ~~~l~-------------------------~~L~~L~l~~~~----------------------------~~~----~~~ 179 (540)
+..+. .+|+.+++++|. +.+ .++
T Consensus 191 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~ 270 (562)
T 3a79_B 191 LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270 (562)
T ss_dssp EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHH
T ss_pred ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHH
Confidence 32211 344444444432 000 001
Q ss_pred hhccCCCCCCeeeccCCccccccCccc-----cCCCCCCeeeeeCccccCcCCc-cccC---CCCCCeEEcCCCCCcccc
Q 045304 180 EEISNLTNLIIIYLGGNKLNGSIPITL-----SKLQKLQGLSLADNKLEGSIPN-NICR---LTELYELDLGSNKFSRSI 250 (540)
Q Consensus 180 ~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~p~-~~~~---l~~L~~L~l~~n~l~~~~ 250 (540)
+. ...++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+|. .+.. ..+|++|++++|.+....
T Consensus 271 ~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 271 QF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred Hh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc
Confidence 11 112378888888888888888766 4444444444444444 2331 1111 134555555555443211
Q ss_pred CccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECCCCcccCC--CccccccccCcceEEcccceeeecCcc-ccc
Q 045304 251 PACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFSSNFLTGP--LPLEIENLKVLVGIDFSVNNFSGVIPT-TIG 326 (540)
Q Consensus 251 ~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~ 326 (540)
....+++|++|++++|.+++ +|..+..+++|++|++++|++.+. +|..+..+++|+.|++++|.+++.+|. .+.
T Consensus 348 --~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 348 --CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp --CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred --CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 11344555555555555555 444555555555555555555542 233445555555555555555542332 344
Q ss_pred cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCC--CCCCCCCCc
Q 045304 327 SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR--GGSFGNFSA 404 (540)
Q Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~--~~~~~~~~~ 404 (540)
.+++|++|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++ .+|. ...+..+..
T Consensus 426 ~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 426 WAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501 (562)
T ss_dssp CCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCC
T ss_pred CcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCE
Confidence 455555555555555544443332 35555555555555 34444445555555555555555 2332 123334444
Q ss_pred ccccCCCCCCCC
Q 045304 405 ESFEGNELLCGS 416 (540)
Q Consensus 405 ~~~~~n~~~c~~ 416 (540)
.++.+|++.|+|
T Consensus 502 L~l~~N~~~c~c 513 (562)
T 3a79_B 502 IWLHDNPWDCTC 513 (562)
T ss_dssp EECCSCCBCCCH
T ss_pred EEecCCCcCCCc
Confidence 555555555544
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.1e-40 Score=334.16 Aligned_cols=372 Identities=18% Similarity=0.170 Sum_probs=320.4
Q ss_pred CCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccC-CccccCCCCCCEEEC
Q 045304 36 LKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFI-PDTFGNLRNLNKVTL 114 (540)
Q Consensus 36 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l 114 (540)
-+.++.+++.++ .+|. + .++|++|++++|.+++..|..+.++++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 346778888887 7886 3 388999999999999888999999999999999999987554 677999999999999
Q ss_pred cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCc-cccccccccCcEEEccCCcceecCChh-ccCCCCCCeee
Q 045304 115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPG-TSVGNLSHSLEYFYMPNCNVSGGIPEE-ISNLTNLIIIY 192 (540)
Q Consensus 115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~ 192 (540)
++|.+++. .+..+.++++|++|++++|.+.+..+. ..+..+ ++|++|++++|.+.+..|.. +..+++|++|+
T Consensus 87 s~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 87 DYNQFLQL-----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPL-TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp TTCTTCEE-----CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTC-TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCCccCcc-----ChhhccCcccCCEEeCCCCCCCccccCcccccCc-ccCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 99999875 466799999999999999999875441 236667 79999999999999887876 89999999999
Q ss_pred ccCCccccccCccccCC--CCCCeeeeeCccccCcCCcc--------ccCCCCCCeEEcCCCCCccccCccCCCC---CC
Q 045304 193 LGGNKLNGSIPITLSKL--QKLQGLSLADNKLEGSIPNN--------ICRLTELYELDLGSNKFSRSIPACFSNL---AS 259 (540)
Q Consensus 193 l~~n~l~~~~~~~l~~l--~~L~~L~l~~n~~~~~~p~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~ 259 (540)
+++|.+.+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+... ++
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 99999999888888766 78999999999998655443 3366899999999999998888776544 88
Q ss_pred CCEeeCCCCCCCCCC-----------cccc--CCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccc
Q 045304 260 LRTLSLGSNELTSIP-----------LTFW--NLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIG 326 (540)
Q Consensus 260 L~~L~l~~n~l~~ip-----------~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 326 (540)
|+.|++++|...+.. ..+. ..++|++|++++|.+.+..|..+..+++|+.|++++|.+++..|..|.
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhc
Confidence 999999988654311 1122 236899999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcc
Q 045304 327 SLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAE 405 (540)
Q Consensus 327 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~ 405 (540)
.+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.. ..+..+..+
T Consensus 321 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 400 (455)
T 3v47_A 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400 (455)
T ss_dssp TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEE
Confidence 9999999999999999888999999999999999999999988999999999999999999998754432 456788899
Q ss_pred cccCCCCCCCCCC
Q 045304 406 SFEGNELLCGSPN 418 (540)
Q Consensus 406 ~~~~n~~~c~~~~ 418 (540)
++.+|++.|.+|.
T Consensus 401 ~l~~N~l~~~~~~ 413 (455)
T 3v47_A 401 WLHTNPWDCSCPR 413 (455)
T ss_dssp ECCSSCBCCCTTT
T ss_pred EccCCCcccCCCc
Confidence 9999999998864
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.1e-40 Score=341.69 Aligned_cols=383 Identities=19% Similarity=0.199 Sum_probs=303.4
Q ss_pred CCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304 8 NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSL 87 (540)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 87 (540)
.+...+++++++|++++ +|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..|..|.++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 34556899999999995 777664 89999999999998 566555589999999999999999888999999999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccC--c
Q 045304 88 LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSL--E 165 (540)
Q Consensus 88 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L--~ 165 (540)
|++++|.++ .+|.. .+++|++|++++|.+++.+ .+..+.++++|++|++++|.+.+. .+..+ .+| +
T Consensus 105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l-~~L~L~ 172 (562)
T 3a79_B 105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLP----VCKEFGNLTKLTFLGLSAAKFRQL----DLLPV-AHLHLS 172 (562)
T ss_dssp EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCC----CCGGGGGCTTCCEEEEECSBCCTT----TTGGG-TTSCEE
T ss_pred EECCCCcCC-ccCcc--ccccCCEEECCCCCccccC----chHhhcccCcccEEecCCCccccC----chhhh-hhceee
Confidence 999999998 45655 8999999999999998743 456789999999999999998763 33444 455 9
Q ss_pred EEEccCCcc--eecCChhccCC--------------------------CCCCeeeccCCc--------------------
Q 045304 166 YFYMPNCNV--SGGIPEEISNL--------------------------TNLIIIYLGGNK-------------------- 197 (540)
Q Consensus 166 ~L~l~~~~~--~~~~~~~l~~l--------------------------~~L~~L~l~~n~-------------------- 197 (540)
+|++++|.+ ++..|..+..+ ++|+.+++++|.
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 999999998 77666666553 355666666552
Q ss_pred --------cccc----cCccccCCCCCCeeeeeCccccCcCCccc-----cCCCCCCeEEcCCCCCccccCc-cCC---C
Q 045304 198 --------LNGS----IPITLSKLQKLQGLSLADNKLEGSIPNNI-----CRLTELYELDLGSNKFSRSIPA-CFS---N 256 (540)
Q Consensus 198 --------l~~~----~~~~l~~l~~L~~L~l~~n~~~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~~-~~~---~ 256 (540)
+.+. ++.. ...++|++|++++|.+.|.+|..+ ..++.|+.+++..+.+ .+|. .+. .
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~ 329 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred EEEecCCcCcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence 1100 0111 123489999999999999999877 6777777777777766 3442 221 1
Q ss_pred CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeec--CccccccCCCCcEE
Q 045304 257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV--IPTTIGSLKGLQYL 334 (540)
Q Consensus 257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L 334 (540)
..+|+.|++++|.+..++. ...+++|++|++++|.+.+.+|..+..+++|+.|++++|.+++. +|..+..+++|++|
T Consensus 330 ~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 330 EMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp TCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred cCcceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 2679999999999876542 25789999999999999999999999999999999999999973 45778999999999
Q ss_pred eCcCccCcccCCc-ccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCC-CCCCCCCCcccccCCCC
Q 045304 335 FVGYNRLQGSIPY-SIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR-GGSFGNFSAESFEGNEL 412 (540)
Q Consensus 335 ~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~-~~~~~~~~~~~~~~n~~ 412 (540)
++++|.+++.+|. .+..+++|+.|++++|++++.+|..+. ++|+.|++++|+++ .+|. ...+..+..+++.+|..
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCC
Confidence 9999999985654 588899999999999999988776654 78999999999998 5554 34566778888888865
Q ss_pred C
Q 045304 413 L 413 (540)
Q Consensus 413 ~ 413 (540)
.
T Consensus 486 ~ 486 (562)
T 3a79_B 486 K 486 (562)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.5e-38 Score=321.46 Aligned_cols=345 Identities=29% Similarity=0.412 Sum_probs=302.4
Q ss_pred CCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304 9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLL 88 (540)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 88 (540)
+++|+.|+++++.+.. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 6799999999999984 55 4889999999999999998 4555 4799999999999999986554 8999999999
Q ss_pred EccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEE
Q 045304 89 ELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFY 168 (540)
Q Consensus 89 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~ 168 (540)
++++|.+++..+ +.++++|++|++++|.+... ..+..+++|+.|+++ +.+.+. ..+..+ ++|++|+
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------~~~~~l~~L~~L~l~-~~~~~~---~~~~~l-~~L~~L~ 183 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-------SALSGLTSLQQLSFG-NQVTDL---KPLANL-TTLERLD 183 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-------GGGTTCTTCSEEEEE-ESCCCC---GGGTTC-TTCCEEE
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-------hhhccCCcccEeecC-CcccCc---hhhccC-CCCCEEE
Confidence 999999986533 89999999999999998864 248899999999997 445443 336666 7999999
Q ss_pred ccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcc
Q 045304 169 MPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR 248 (540)
Q Consensus 169 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 248 (540)
+++|.+.+. +.+..+++|++|++++|.+.+..| +..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++
T Consensus 184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 257 (466)
T 1o6v_A 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN 257 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc
Confidence 999998753 458899999999999999987665 77899999999999999853 468899999999999999987
Q ss_pred ccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccC
Q 045304 249 SIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSL 328 (540)
Q Consensus 249 ~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 328 (540)
..+ +..+++|+.|++++|.+++++. +..+++|+.|++++|++.+..+ +..+++|+.|++++|.+++..| +..+
T Consensus 258 ~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l 330 (466)
T 1o6v_A 258 LAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSL 330 (466)
T ss_dssp CGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred chh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccC
Confidence 655 8899999999999999999876 8889999999999999987654 7889999999999999998766 7889
Q ss_pred CCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee
Q 045304 329 KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 391 (540)
++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 331 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999999999999975 478899999999999999998877 8899999999999999986
No 27
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=325.83 Aligned_cols=347 Identities=22% Similarity=0.211 Sum_probs=213.2
Q ss_pred CCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECc
Q 045304 36 LKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115 (540)
Q Consensus 36 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 115 (540)
-+.++.+++.++ .+|..+ .++++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 357888888887 788755 3688999999999888778888889999999999998888888888888888888888
Q ss_pred CccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccC
Q 045304 116 NNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195 (540)
Q Consensus 116 ~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 195 (540)
+|.++..+ +..+.++++|++|++++|.+.+..+ ..+ ..+++|++|++++
T Consensus 89 ~n~l~~~~-----~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~-------------------------~~l~~L~~L~l~~ 137 (477)
T 2id5_A 89 SNRLKLIP-----LGVFTGLSNLTKLDISENKIVILLD-YMF-------------------------QDLYNLKSLEVGD 137 (477)
T ss_dssp SSCCCSCC-----TTSSTTCTTCCEEECTTSCCCEECT-TTT-------------------------TTCTTCCEEEECC
T ss_pred CCcCCccC-----cccccCCCCCCEEECCCCccccCCh-hHc-------------------------cccccCCEEECCC
Confidence 88887652 2346677777777777777765544 333 4444444444444
Q ss_pred CccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CC
Q 045304 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IP 274 (540)
Q Consensus 196 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip 274 (540)
|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+ +|
T Consensus 138 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 138 NDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp TTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred CccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 44444444444445555555555555444333344455555555555555554444445555555555555544333 44
Q ss_pred ccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCC
Q 045304 275 LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLIS 354 (540)
Q Consensus 275 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 354 (540)
.......+|++|++++|.+.+..+..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 44444445555555555555443345555666666666666666555555666666666666666666666666666666
Q ss_pred CCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC
Q 045304 355 LKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP 417 (540)
Q Consensus 355 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 417 (540)
|+.|++++|++++..+..|..+++|+.|++++|++.+..+..+.+.......+.++...|..|
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence 666666666666555555566666666666666666544332222222233444555555443
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=8e-38 Score=332.44 Aligned_cols=389 Identities=21% Similarity=0.188 Sum_probs=309.5
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCC
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNA 82 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 82 (540)
|.+|.++++|++|+|++|++++..|.+|.++++|++|+|++|.++ .+|...|.++++|++|++++|.+++..+..|+++
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L 147 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTC
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcC
Confidence 357999999999999999999888889999999999999999998 7888777999999999999999998777789999
Q ss_pred CCCCEEEccCCccccc-CCccccCCCCCCEEECcCccccCCCCCc-c---------------------ccccCCCCCCCC
Q 045304 83 SKLSLLELGDNSFSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDL-N---------------------FLSSLSNCKTLT 139 (540)
Q Consensus 83 ~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~---------------------~~~~l~~l~~L~ 139 (540)
++|++|++++|.+.+. .|..++.+++|++|++++|.+++..... . ++........++
T Consensus 148 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~ 227 (635)
T 4g8a_A 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 227 (635)
T ss_dssp TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEE
T ss_pred cccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhh
Confidence 9999999999999764 5788899999999999999887642110 0 000000111112
Q ss_pred EEECcCCCCCcc----------------------------------------------------------CC--------
Q 045304 140 YIDLSDNPLDGI----------------------------------------------------------LP-------- 153 (540)
Q Consensus 140 ~L~l~~n~l~~~----------------------------------------------------------~~-------- 153 (540)
.+++.+|..... ..
T Consensus 228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 307 (635)
T 4g8a_A 228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN 307 (635)
T ss_dssp EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence 222222211000 00
Q ss_pred -------------ccccccccccCcEEEccCCcceecCC-------------------hhccCCCCCCeeeccCCcccc-
Q 045304 154 -------------GTSVGNLSHSLEYFYMPNCNVSGGIP-------------------EEISNLTNLIIIYLGGNKLNG- 200 (540)
Q Consensus 154 -------------~~~~~~l~~~L~~L~l~~~~~~~~~~-------------------~~l~~l~~L~~L~l~~n~l~~- 200 (540)
...+... ..++.|++.+|.+.+..+ .....+++|+.++++.|.+..
T Consensus 308 l~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 308 VSSFSLVSVTIERVKDFSYN-FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp CSEEEEESCEEEECGGGGSC-CCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred cccccccccccccccccccc-hhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 0000111 346666666665543221 123457889999999998753
Q ss_pred -ccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccC-ccCCCCCCCCEeeCCCCCCCC-CCccc
Q 045304 201 -SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTS-IPLTF 277 (540)
Q Consensus 201 -~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-ip~~~ 277 (540)
..+..+..+.+|+.+++..+.... .+..+..+++|+.+++..+......+ ..|..+++++.++++.|.+.. .+..+
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 455667788999999999998874 55678899999999999887765544 567889999999999999988 45577
Q ss_pred cCCCCCcEEECCCCccc-CCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCC
Q 045304 278 WNLKDILYLNFSSNFLT-GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLK 356 (540)
Q Consensus 278 ~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 356 (540)
..++.++.|++++|.+. +..|..+..+++|+.|+|++|++++..|..|..+++|++|+|++|++++..|..+..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 88999999999999754 45788899999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCcCccccCccccCC-CCCCeEEcccCcceeeCC
Q 045304 357 SLNLSNNNLSGTIPVSLEKL-SYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 357 ~L~l~~n~l~~~~~~~~~~~-~~L~~l~l~~n~l~~~~p 394 (540)
+|++++|++++..|..+..+ ++|+.|++++|++.+.+.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 99999999999999999888 689999999999998765
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.2e-38 Score=316.67 Aligned_cols=337 Identities=27% Similarity=0.362 Sum_probs=242.4
Q ss_pred CCCcccCCCCCCCEEeccCcccccCCCccccCCCCC-------------CEEEcccCcCccccchhhhcCCCCCCEEEcc
Q 045304 1 EIPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTL-------------KVFEVSNNSLSGSLSSIAGVRLPNLEVLRMR 67 (540)
Q Consensus 1 ~lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~ 67 (540)
+||++++++++|++|++++|.+.+.+|..++.+.+| ++|++++|.++ .+|.. .++|+.|+++
T Consensus 25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~~----~~~L~~L~l~ 99 (454)
T 1jl5_A 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPEL----PPHLESLVAS 99 (454)
T ss_dssp ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCSC----CTTCSEEECC
T ss_pred hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCCC----cCCCCEEEcc
Confidence 478888888888888888888888888888887764 88888888887 45542 4788899999
Q ss_pred CCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCC
Q 045304 68 SNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP 147 (540)
Q Consensus 68 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~ 147 (540)
+|.+++ +|.. .++|++|++++|.+++. +.. .++|++|++++|.+++ ++ .+.++++|++|++++|.
T Consensus 100 ~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~------lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 100 CNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK------LP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp SSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS------CC-CCTTCTTCCEEECCSSC
T ss_pred CCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC------Cc-ccCCCCCCCEEECCCCc
Confidence 888886 6643 37888899988888752 221 2689999999998876 33 48888999999999998
Q ss_pred CCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCC
Q 045304 148 LDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP 227 (540)
Q Consensus 148 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 227 (540)
+.+ +| .. ..+|++|++++|.+.+ +| .+..+++|++|++++|++++ +|.. .++|++|++++|.+. .+|
T Consensus 165 l~~-lp-~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 165 LKK-LP-DL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp CSC-CC-CC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC
T ss_pred Ccc-cC-CC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc
Confidence 876 33 22 2589999999998886 56 58889999999999998885 4432 258899999999888 567
Q ss_pred ccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCc
Q 045304 228 NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVL 307 (540)
Q Consensus 228 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 307 (540)
. +..+++|++|++++|++++ +|.. +++|+.|++++|.++++|.. +++|++|++++|.+.+. |. ..++|
T Consensus 232 ~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L 299 (454)
T 1jl5_A 232 E-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGL-SE---LPPNL 299 (454)
T ss_dssp C-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEE-SC---CCTTC
T ss_pred c-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccccCcc---cCcCCEEECcCCccCcc-cC---cCCcC
Confidence 4 8889999999999998875 4442 47889999999998888764 37788888888888762 11 11466
Q ss_pred ceEEcccceeeecCccccccC-CCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEccc
Q 045304 308 VGIDFSVNNFSGVIPTTIGSL-KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSF 386 (540)
Q Consensus 308 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 386 (540)
+.|++++|.+++. + .+ ++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+.|++++
T Consensus 300 ~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 300 YYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEY 366 (454)
T ss_dssp CEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred CEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence 7777777777642 1 12 467777777777764 4433 466777777777776 3454 356777777777
Q ss_pred Cccee--eCCC
Q 045304 387 NKLAG--EIPR 395 (540)
Q Consensus 387 n~l~~--~~p~ 395 (540)
|++++ .+|.
T Consensus 367 N~l~~l~~ip~ 377 (454)
T 1jl5_A 367 NPLREFPDIPE 377 (454)
T ss_dssp SCCSSCCCCCT
T ss_pred CCCCcCCCChH
Confidence 77766 4553
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1e-37 Score=315.28 Aligned_cols=339 Identities=19% Similarity=0.150 Sum_probs=248.8
Q ss_pred cccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCC
Q 045304 4 HEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNAS 83 (540)
Q Consensus 4 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 83 (540)
.+++++++|++|++++|.+++. | .++.+++|++|++++|.+++ +| +..+++|++|++++|.+++. + +++++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred cChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 4577889999999999999964 5 68999999999999999984 55 46899999999999999864 3 88999
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccccc
Q 045304 84 KLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHS 163 (540)
Q Consensus 84 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~ 163 (540)
+|++|++++|.+++. + ++.+++|++|++++|.+++. .+..+++|++|++++|...+.++ ++.+ ++
T Consensus 107 ~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l--------~l~~l~~L~~L~l~~n~~~~~~~---~~~l-~~ 171 (457)
T 3bz5_A 107 KLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI--------DVSHNTQLTELDCHLNKKITKLD---VTPQ-TQ 171 (457)
T ss_dssp TCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC--------CCTTCTTCCEEECTTCSCCCCCC---CTTC-TT
T ss_pred cCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee--------ccccCCcCCEEECCCCCcccccc---cccC-Cc
Confidence 999999999999874 3 88999999999999998874 27788999999999997666543 4555 78
Q ss_pred CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS 243 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 243 (540)
|++|++++|++++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|.+++ +| +..+++|++|++++
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence 9999999999987 44 88899999999999999865 37889999999999999997 56 88899999999999
Q ss_pred CCCccccCccCCCCCCCCEeeCCCCCCCC-----------CCccccCCCCCcEEECCCCcccCCCccc--------cccc
Q 045304 244 NKFSRSIPACFSNLASLRTLSLGSNELTS-----------IPLTFWNLKDILYLNFSSNFLTGPLPLE--------IENL 304 (540)
Q Consensus 244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------ip~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~l 304 (540)
|++++..+. .+++|+.|+++.|.++. +| +..+++|+.|++++|...+.+|.. +..+
T Consensus 243 N~l~~~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~ 317 (457)
T 3bz5_A 243 NPLTELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN 317 (457)
T ss_dssp SCCSCCCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC
T ss_pred CcCCCcCHH---HCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhc
Confidence 999876543 45555555555443332 22 345667777777777665555432 2333
Q ss_pred cCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEc
Q 045304 305 KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNL 384 (540)
Q Consensus 305 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l 384 (540)
++|+.|++++|++++. + +..+++|+.|++++|++++ ++.|..|++++|.++|. ..+..|..+++
T Consensus 318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l 381 (457)
T 3bz5_A 318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETL 381 (457)
T ss_dssp TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCC
T ss_pred ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcccc
Confidence 4444555555555442 1 4444555555555555443 12333344444444443 13345677888
Q ss_pred ccCcceeeCCCC
Q 045304 385 SFNKLAGEIPRG 396 (540)
Q Consensus 385 ~~n~l~~~~p~~ 396 (540)
++|+++|.+|..
T Consensus 382 ~~N~l~g~ip~~ 393 (457)
T 3bz5_A 382 TNNSLTIAVSPD 393 (457)
T ss_dssp BTTBEEEECCTT
T ss_pred ccCcEEEEcChh
Confidence 888888888853
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.2e-37 Score=312.21 Aligned_cols=329 Identities=29% Similarity=0.446 Sum_probs=287.4
Q ss_pred CCcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC
Q 045304 2 IPHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN 81 (540)
Q Consensus 2 lp~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 81 (540)
+| .+..+++|++|+|++|.+++..+ +..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++.. . +.+
T Consensus 61 l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~ 132 (466)
T 1o6v_A 61 ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLTLFNNQITDID-P-LKN 132 (466)
T ss_dssp CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG-G-GTT
T ss_pred Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEECCCCCCCCCh-H-HcC
Confidence 44 47889999999999999996544 9999999999999999984 554 479999999999999998653 3 899
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 161 (540)
+++|++|++++|.+.+. + .+..+++|++|+++ +.+... ..+.++++|+.|++++|.+.+. ..+..+
T Consensus 133 l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~---~~l~~l- 198 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL-------KPLANLTTLERLDISSNKVSDI---SVLAKL- 198 (466)
T ss_dssp CTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC-------GGGTTCTTCCEEECCSSCCCCC---GGGGGC-
T ss_pred CCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc-------hhhccCCCCCEEECcCCcCCCC---hhhccC-
Confidence 99999999999999863 3 58999999999996 444432 2388999999999999998765 346666
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
++|++|++++|.+.+..| ++.+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++
T Consensus 199 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 199 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 272 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEEC
Confidence 799999999999987655 78899999999999999853 368899999999999999987654 889999999999
Q ss_pred CCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecC
Q 045304 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVI 321 (540)
Q Consensus 242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 321 (540)
++|.+++..+ +..+++|+.|++++|.+++++. +..+++|+.|++++|++.+..| +..+++|+.|++++|.+++.
T Consensus 273 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~- 346 (466)
T 1o6v_A 273 GANQISNISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV- 346 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-
T ss_pred CCCccCcccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc-
Confidence 9999987554 8899999999999999999776 7889999999999999998766 78899999999999999875
Q ss_pred ccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 322 PTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
..+..+++|+.|++++|.+++..| +..+++|+.|++++|.+++
T Consensus 347 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 347 -SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 478899999999999999998877 8899999999999999996
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=315.52 Aligned_cols=347 Identities=20% Similarity=0.205 Sum_probs=241.4
Q ss_pred CCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEcc
Q 045304 12 LELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELG 91 (540)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 91 (540)
-+.++.++++++ .+|..+ .++++.|+|++|.++ .++...+..+++|++|+|++|.+++..|..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 468889998888 567655 368999999999998 4555555899999999999999998889999999999999999
Q ss_pred CCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccC
Q 045304 92 DNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPN 171 (540)
Q Consensus 92 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~ 171 (540)
+|.+++..+..|.++++|++|++++|.+... .+..+..+++|+.|++++|.+.+..+ ..+..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~------------ 150 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVIL-----LDYMFQDLYNLKSLEVGDNDLVYISH-RAFSG------------ 150 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-----CTTTTTTCTTCCEEEECCTTCCEECT-TSSTT------------
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccC-----ChhHccccccCCEEECCCCccceeCh-hhccC------------
Confidence 9999977777899999999999999999876 45568889999999999988876544 33443
Q ss_pred CcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccC
Q 045304 172 CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP 251 (540)
Q Consensus 172 ~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 251 (540)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.+|
T Consensus 151 -------------l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 217 (477)
T 2id5_A 151 -------------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217 (477)
T ss_dssp -------------CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC
T ss_pred -------------CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC
Confidence 4444555555554444333344455555555555555554444455555555555555555554555
Q ss_pred ccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCC
Q 045304 252 ACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG 330 (540)
Q Consensus 252 ~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 330 (540)
.......+|+.|++++|.++.+|. .+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.+++..|..|..+++
T Consensus 218 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred cccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 444444566666666666666553 4556666666666666666666666677777777777777777777777777777
Q ss_pred CcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 331 LQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 331 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
|+.|+|++|.+++..+..|..+++|+.|++++|++....+..+ -......+++.++...+..|
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~-~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLW-VFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHH-HHTTTTSSCCTTCCCBEEES
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHh-HHhhhhccccCccCceeCCc
Confidence 7777777777776666667777778888888887764332111 11223334455555555444
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-36 Score=305.59 Aligned_cols=350 Identities=27% Similarity=0.336 Sum_probs=268.9
Q ss_pred CCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCC-------------CCEEEccCCcccc
Q 045304 7 GNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPN-------------LEVLRMRSNNFCG 73 (540)
Q Consensus 7 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~ 73 (540)
.+.++|++|++++|.+ +.+|++++++++|++|++++|.+.|.+|..+ ..+++ ++.|++++|.+++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 3568999999999999 7999999999999999999999999999887 56765 4999999999985
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCC
Q 045304 74 TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILP 153 (540)
Q Consensus 74 ~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 153 (540)
+|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++.+. + .++|++|++++|.+.+ +|
T Consensus 86 -lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~---~------~~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 86 -LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSD---L------PPLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp -CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCS---C------CTTCCEEECCSSCCSS-CC
T ss_pred -CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccC---C------CCCCCEEECcCCCCCC-Cc
Confidence 4542 4789999999999997 5643 4899999999999887432 1 2689999999999987 55
Q ss_pred ccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCC
Q 045304 154 GTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRL 233 (540)
Q Consensus 154 ~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l 233 (540)
.++.+ ++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|...
T Consensus 148 --~~~~l-~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~--- 214 (454)
T 1jl5_A 148 --ELQNS-SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP--- 214 (454)
T ss_dssp --CCTTC-TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---
T ss_pred --ccCCC-CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---
Confidence 47777 899999999999985 66543 589999999999996 56 58999999999999999986 55432
Q ss_pred CCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcc
Q 045304 234 TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFS 313 (540)
Q Consensus 234 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 313 (540)
++|++|++++|.++ .+|. +..+++|+.|++++|.++++|.. +++|++|++++|.+.+ +|.. +++|+.|+++
T Consensus 215 ~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls 285 (454)
T 1jl5_A 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVS 285 (454)
T ss_dssp TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECc
Confidence 58999999999998 6774 89999999999999999998864 4789999999999986 5543 4789999999
Q ss_pred cceeeecCccccccCCCCcEEeCcCccCcccCCcccCCC-CCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceee
Q 045304 314 VNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL-ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGE 392 (540)
Q Consensus 314 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 392 (540)
+|.+++. |.. .++|+.|++++|.+++ ++ .+ ++|+.|++++|++++ +|.. +++|+.|++++|.++ .
T Consensus 286 ~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~ 351 (454)
T 1jl5_A 286 ENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-E 351 (454)
T ss_dssp SSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-C
T ss_pred CCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-c
Confidence 9999873 221 2689999999999985 22 23 589999999999996 6654 589999999999998 4
Q ss_pred CCCCCCCCCCCcccccCCCCCC
Q 045304 393 IPRGGSFGNFSAESFEGNELLC 414 (540)
Q Consensus 393 ~p~~~~~~~~~~~~~~~n~~~c 414 (540)
+|. .+.++...++.+|...+
T Consensus 352 lp~--~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 352 VPE--LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCC--CCTTCCEEECCSSCCSS
T ss_pred ccc--hhhhccEEECCCCCCCc
Confidence 676 56788888888887655
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-35 Score=285.56 Aligned_cols=255 Identities=33% Similarity=0.566 Sum_probs=234.8
Q ss_pred ccCcEEEccCCccee--cCChhccCCCCCCeeeccC-CccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCe
Q 045304 162 HSLEYFYMPNCNVSG--GIPEEISNLTNLIIIYLGG-NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYE 238 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~ 238 (540)
.+++.|++++|.+.+ .+|+.+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467888888888888 8888899999999999995 8898889989999999999999999999889999999999999
Q ss_pred EEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCC-CCcEEECCCCcccCCCccccccccCcceEEcccce
Q 045304 239 LDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLK-DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNN 316 (540)
Q Consensus 239 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 316 (540)
|++++|.+++.+|..|..+++|++|++++|.+++ +|..+..++ +|++|++++|.+.+.+|..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 9999999998899999999999999999999985 888888888 999999999999999999999887 9999999999
Q ss_pred eeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCC
Q 045304 317 FSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG 396 (540)
Q Consensus 317 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~ 396 (540)
+++..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9999999999999999999999999977776 788999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcccccCCCCCCCCCC
Q 045304 397 GSFGNFSAESFEGNELLCGSPN 418 (540)
Q Consensus 397 ~~~~~~~~~~~~~n~~~c~~~~ 418 (540)
..+..+....+.+|+++|+.|.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTS
T ss_pred ccccccChHHhcCCCCccCCCC
Confidence 8888999999999999999764
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1e-34 Score=289.15 Aligned_cols=311 Identities=21% Similarity=0.236 Sum_probs=211.7
Q ss_pred CCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304 32 NVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNK 111 (540)
Q Consensus 32 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 111 (540)
.++++++|++++|.++ .+|..++..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|+++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3466677777776665 566665566677777777777666555556666777777777777766666666667777777
Q ss_pred EECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCee
Q 045304 112 VTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIII 191 (540)
Q Consensus 112 L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 191 (540)
|++++|.++..+. ..+.++++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+++. .+..+++|+.|
T Consensus 122 L~L~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l-~~L~~L~l~~n~l~~~---~~~~l~~L~~L 191 (390)
T 3o6n_A 122 LVLERNDLSSLPR-----GIFHNTPKLTTLSMSNNNLERIED-DTFQAT-TSLQNLQLSSNRLTHV---DLSLIPSLFHA 191 (390)
T ss_dssp EECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCBCCT-TTTSSC-TTCCEEECCSSCCSBC---CGGGCTTCSEE
T ss_pred EECCCCccCcCCH-----HHhcCCCCCcEEECCCCccCccCh-hhccCC-CCCCEEECCCCcCCcc---cccccccccee
Confidence 7777776665321 224666677777777776665544 445555 5677777777766543 24556677777
Q ss_pred eccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCC
Q 045304 192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT 271 (540)
Q Consensus 192 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 271 (540)
++++|.+++ +...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|+.|++++|.++
T Consensus 192 ~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 192 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp ECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred ecccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC
Confidence 777776653 23345677777777776643 222 236777777777777653 45677777777777777777
Q ss_pred CC-CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccC
Q 045304 272 SI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG 350 (540)
Q Consensus 272 ~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 350 (540)
++ |..+..+++|++|++++|++.+ +|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.++.. + +.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~ 336 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS 336 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC
T ss_pred CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--ch
Confidence 73 5567777777777777777764 4555566778888888888887 4566677788889999999888744 3 67
Q ss_pred CCCCCCEEECCCCcCccc
Q 045304 351 DLISLKSLNLSNNNLSGT 368 (540)
Q Consensus 351 ~l~~L~~L~l~~n~l~~~ 368 (540)
.+++|+.|++++|++++.
T Consensus 337 ~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TTCCCSEEECCSSCEEHH
T ss_pred hhccCCEEEcCCCCccch
Confidence 788899999999998854
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-35 Score=290.45 Aligned_cols=336 Identities=19% Similarity=0.182 Sum_probs=284.6
Q ss_pred CCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCC
Q 045304 57 RLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCK 136 (540)
Q Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~ 136 (540)
.+++++.|++++|.+....+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.+. .+..+.+++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-----PPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-----CTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcC-----CHHHhcCCC
Confidence 578999999999999865555678999999999999999988888999999999999999999886 445688999
Q ss_pred CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeee
Q 045304 137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS 216 (540)
Q Consensus 137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 216 (540)
+|++|++++|.+....+ ..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+++. .+..+++|+.|+
T Consensus 118 ~L~~L~L~~n~l~~l~~-~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~ 192 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPR-GIFHNT-PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHAN 192 (390)
T ss_dssp TCCEEECCSSCCCCCCT-TTTTTC-TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEE
T ss_pred CCCEEECCCCccCcCCH-HHhcCC-CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceee
Confidence 99999999999986544 556667 8999999999999988888899999999999999999864 356789999999
Q ss_pred eeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCC
Q 045304 217 LADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296 (540)
Q Consensus 217 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~ 296 (540)
+++|.+++ +...++|++|++++|.+... |.. ..++|+.|++++|.+++.+ .+..+++|++|++++|.+.+.
T Consensus 193 l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 193 VSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEE
T ss_pred cccccccc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCc
Confidence 99998874 34456899999999999865 332 3579999999999999874 678899999999999999998
Q ss_pred CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCC
Q 045304 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL 376 (540)
Q Consensus 297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 376 (540)
.|..+..+++|+.|++++|.+++ +|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|+++.. + +..+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~ 338 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTH 338 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTT
T ss_pred ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhh
Confidence 89999999999999999999986 5666778899999999999998 5677788899999999999999854 3 6788
Q ss_pred CCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC
Q 045304 377 SYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP 417 (540)
Q Consensus 377 ~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 417 (540)
++|+.|++++|++.+.... ..+..+....+.+++..|.++
T Consensus 339 ~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred ccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 9999999999999875322 234444555566777777653
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.9e-35 Score=293.51 Aligned_cols=326 Identities=20% Similarity=0.223 Sum_probs=249.4
Q ss_pred CcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc
Q 045304 19 HNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF 98 (540)
Q Consensus 19 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 98 (540)
.....+..+..++++++|++|++++|.+++ +| .+ ..+++|++|++++|.+++. | ++.+++|++|++++|.+++.
T Consensus 27 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l-~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~ 100 (457)
T 3bz5_A 27 AFEMQATDTISEEQLATLTSLDCHNSSITD-MT-GI-EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL 100 (457)
T ss_dssp HTTCCTTSEEEHHHHTTCCEEECCSSCCCC-CT-TG-GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC
T ss_pred hcCcCcccccChhHcCCCCEEEccCCCccc-Ch-hh-cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee
Confidence 344455556678899999999999999984 56 33 7899999999999999964 4 88999999999999999875
Q ss_pred CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecC
Q 045304 99 IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGI 178 (540)
Q Consensus 99 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~ 178 (540)
+ ++++++|++|++++|.+++. + +..+++|++|++++|.+++. + ++.+ ++|++|++++|...+.+
T Consensus 101 -~--~~~l~~L~~L~L~~N~l~~l------~--~~~l~~L~~L~l~~N~l~~l-~---l~~l-~~L~~L~l~~n~~~~~~ 164 (457)
T 3bz5_A 101 -D--VTPLTKLTYLNCDTNKLTKL------D--VSQNPLLTYLNCARNTLTEI-D---VSHN-TQLTELDCHLNKKITKL 164 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSCC------C--CTTCTTCCEEECTTSCCSCC-C---CTTC-TTCCEEECTTCSCCCCC
T ss_pred -e--cCCCCcCCEEECCCCcCCee------c--CCCCCcCCEEECCCCcccee-c---cccC-CcCCEEECCCCCccccc
Confidence 3 89999999999999999874 2 78899999999999999884 2 5556 78999999999777666
Q ss_pred ChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCC
Q 045304 179 PEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLA 258 (540)
Q Consensus 179 ~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 258 (540)
.+..+++|++|++++|++++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..++
T Consensus 165 --~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~ 233 (457)
T 3bz5_A 165 --DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLT 233 (457)
T ss_dssp --CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred --ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccC
Confidence 47889999999999999996 44 78899999999999999875 38899999999999999997 55 88899
Q ss_pred CCCEeeCCCCCCCCCCccccCCCCCcEE----------ECCCCcccCCCccccccccCcceEEcccceeeecCccc----
Q 045304 259 SLRTLSLGSNELTSIPLTFWNLKDILYL----------NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTT---- 324 (540)
Q Consensus 259 ~L~~L~l~~n~l~~ip~~~~~l~~L~~L----------~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---- 324 (540)
+|+.|++++|.++++|. ..+++|+.| ++++|.+.+.+| +..+++|+.|++++|...+.+|..
T Consensus 234 ~L~~L~l~~N~l~~~~~--~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L 309 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDV--STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGI 309 (457)
T ss_dssp TCSEEECCSSCCSCCCC--TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCC
T ss_pred CCCEEEeeCCcCCCcCH--HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcc
Confidence 99999999999999763 345555554 444554444444 345667777777777665555432
Q ss_pred ----cccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceee
Q 045304 325 ----IGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGE 392 (540)
Q Consensus 325 ----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 392 (540)
+..+++|++|++++|++++. + ++.+++|+.|++++|++++ ++.|..++++.|.+.|.
T Consensus 310 ~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 310 TELDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp SCCCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred eEechhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence 33445566666666666652 2 5556666666666666653 23445555666666554
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.2e-35 Score=305.44 Aligned_cols=335 Identities=20% Similarity=0.197 Sum_probs=227.9
Q ss_pred CCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304 33 VSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKV 112 (540)
Q Consensus 33 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 112 (540)
+.+++.|++++|.+. .+|..++..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 455566666665554 4555554556666666666666555555555555666666666665555555555555555555
Q ss_pred ECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeee
Q 045304 113 TLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIY 192 (540)
Q Consensus 113 ~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 192 (540)
+|++|.++..+. ..+.++++|++|+++ +|.+.+..|..+..+++|++|+
T Consensus 129 ~L~~n~l~~l~~-----~~~~~l~~L~~L~Ls--------------------------~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 129 VLERNDLSSLPR-----GIFHNTPKLTTLSMS--------------------------NNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp ECCSSCCCCCCT-----TTTTTCTTCCEEECC--------------------------SSCCCBCCTTTTTTCTTCCEEE
T ss_pred EeeCCCCCCCCH-----HHhccCCCCCEEEee--------------------------CCcCCCCChhhhhcCCcCcEEE
Confidence 555555554311 123444445555554 4444444555566667777777
Q ss_pred ccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC
Q 045304 193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS 272 (540)
Q Consensus 193 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 272 (540)
+++|.+++.. +..+++|+.|++++|.+++ +...++|+.|++++|.+....+.. .++|+.|++++|.+++
T Consensus 178 L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 178 LSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC
T ss_pred CcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC
Confidence 7777766432 4456677777777776653 234457788888888776543322 3578888888888887
Q ss_pred CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCC
Q 045304 273 IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDL 352 (540)
Q Consensus 273 ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 352 (540)
. ..+..+++|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+
T Consensus 247 ~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l 323 (597)
T 3oja_B 247 T-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 323 (597)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred C-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccC
Confidence 4 467778888888888888888888888888999999999998886 4666777889999999999998 677778888
Q ss_pred CCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCCCCCCCCCCcccccCCCCCCCCC
Q 045304 353 ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRGGSFGNFSAESFEGNELLCGSP 417 (540)
Q Consensus 353 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~~~~~~~~~~~~~~n~~~c~~~ 417 (540)
++|+.|++++|.+++. | +..+++|+.|++++|++.+.... ..+..+....+.+++..|+.+
T Consensus 324 ~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 324 DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence 9999999999999854 3 66788999999999999875432 234455566677888888763
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.2e-34 Score=281.05 Aligned_cols=306 Identities=25% Similarity=0.383 Sum_probs=201.6
Q ss_pred cCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCC
Q 045304 31 FNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLN 110 (540)
Q Consensus 31 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 110 (540)
..+++|++|++++|.+. .++. +..+++|++|++++|.+++. +. +..+++|++|++++|.+++. +.+.++++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred hhcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 34555555555555554 3433 23455555555555555532 22 55555555555555555432 2355556666
Q ss_pred EEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCe
Q 045304 111 KVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLII 190 (540)
Q Consensus 111 ~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 190 (540)
+|++++|.+... + .+..+++|+.|++++|.....++ .+..+ ++|++|++++|.+.+..+ +..+++|++
T Consensus 114 ~L~l~~n~i~~~------~-~~~~l~~L~~L~l~~n~~~~~~~--~~~~l-~~L~~L~l~~~~~~~~~~--~~~l~~L~~ 181 (347)
T 4fmz_A 114 ELYLNEDNISDI------S-PLANLTKMYSLNLGANHNLSDLS--PLSNM-TGLNYLTVTESKVKDVTP--IANLTDLYS 181 (347)
T ss_dssp EEECTTSCCCCC------G-GGTTCTTCCEEECTTCTTCCCCG--GGTTC-TTCCEEECCSSCCCCCGG--GGGCTTCSE
T ss_pred EEECcCCcccCc------h-hhccCCceeEEECCCCCCccccc--chhhC-CCCcEEEecCCCcCCchh--hccCCCCCE
Confidence 666665555542 1 15555566666666654433332 24444 556666666666553322 667777777
Q ss_pred eeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCC
Q 045304 191 IYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNEL 270 (540)
Q Consensus 191 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 270 (540)
|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+
T Consensus 182 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQI 255 (347)
T ss_dssp EECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCcc
Confidence 8887777764333 6677788888888887775433 6777888888888888775443 77788888888888888
Q ss_pred CCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccC
Q 045304 271 TSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIG 350 (540)
Q Consensus 271 ~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 350 (540)
++++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..| +.
T Consensus 256 ~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 256 SDIN-AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp CCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred CCCh-hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 7764 567778888888888888754 357788888889999988888888888888999999999999887666 77
Q ss_pred CCCCCCEEECCCCcCc
Q 045304 351 DLISLKSLNLSNNNLS 366 (540)
Q Consensus 351 ~l~~L~~L~l~~n~l~ 366 (540)
.+++|+.|++++|.++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 8889999999998875
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.8e-34 Score=280.56 Aligned_cols=306 Identities=24% Similarity=0.359 Sum_probs=266.0
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCC
Q 045304 56 VRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC 135 (540)
Q Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l 135 (540)
..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++.. ..+..+
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~-------~~~~~l 109 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI-------SALQNL 109 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-------GGGTTC
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc-------hHHcCC
Confidence 468999999999999884 44 48899999999999999986543 99999999999999988864 358899
Q ss_pred CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL 215 (540)
Q Consensus 136 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 215 (540)
++|++|++++|.+.+.. .+..+ ++|++|++++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 110 ~~L~~L~l~~n~i~~~~---~~~~l-~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L 182 (347)
T 4fmz_A 110 TNLRELYLNEDNISDIS---PLANL-TKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL 182 (347)
T ss_dssp TTCSEEECTTSCCCCCG---GGTTC-TTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred CcCCEEECcCCcccCch---hhccC-CceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence 99999999999998753 26666 7999999999977665554 8999999999999999885544 8899999999
Q ss_pred eeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccC
Q 045304 216 SLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTG 295 (540)
Q Consensus 216 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~ 295 (540)
++++|.+.+. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++++. +..+++|++|++++|.+.+
T Consensus 183 ~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 183 SLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp ECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred EccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC
Confidence 9999999854 33 8899999999999999986554 8889999999999999999877 8899999999999999986
Q ss_pred CCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccC
Q 045304 296 PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEK 375 (540)
Q Consensus 296 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 375 (540)
. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..| +..
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 4 4688899999999999999864 458889999999999999999888999999999999999999997766 788
Q ss_pred CCCCCeEEcccCcce
Q 045304 376 LSYLEDLNLSFNKLA 390 (540)
Q Consensus 376 ~~~L~~l~l~~n~l~ 390 (540)
+++|+.+++++|+++
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999875
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-34 Score=302.66 Aligned_cols=310 Identities=18% Similarity=0.188 Sum_probs=241.9
Q ss_pred CCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCE
Q 045304 8 NLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSL 87 (540)
Q Consensus 8 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 87 (540)
.+++++.|++++|.+....+..|..+++|++|++++|.+++ ++...+..+++|++|+|++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35789999999999997766778999999999999999984 55544589999999999999999888888999999999
Q ss_pred EEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEE
Q 045304 88 LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYF 167 (540)
Q Consensus 88 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L 167 (540)
|+|++|.+++..+..|+++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.. ++.+ ++|+.|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l-~~L~~L 197 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-----EDDTFQATTSLQNLQLSSNRLTHVD----LSLI-PSLFHA 197 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-----CTTTTTTCTTCCEEECTTSCCSBCC----GGGC-TTCSEE
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-----ChhhhhcCCcCcEEECcCCCCCCcC----hhhh-hhhhhh
Confidence 99999999977667789999999999999999886 4556899999999999999998752 3344 788999
Q ss_pred EccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc
Q 045304 168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247 (540)
Q Consensus 168 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 247 (540)
++++|.+.+ +...++|+.|++++|.+....+. + .++|+.|++++|.+++ +..+..+++|+.|+|++|.++
T Consensus 198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 198 NVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp ECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC
T ss_pred hcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC
Confidence 999888764 34456788899998888744332 2 3578888888888876 366788888888888888888
Q ss_pred cccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccccc
Q 045304 248 RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS 327 (540)
Q Consensus 248 ~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 327 (540)
+..|..|..+++|+.|++++|.++++|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.+++.. +..
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~ 343 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LST 343 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCT
T ss_pred CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhh
Confidence 88888888888888888888888877776666777777777777766 44555555566666666666554321 333
Q ss_pred CCCCcEEeCcCccCc
Q 045304 328 LKGLQYLFVGYNRLQ 342 (540)
Q Consensus 328 l~~L~~L~l~~n~l~ 342 (540)
+++|+.|++++|.+.
T Consensus 344 ~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 344 HHTLKNLTLSHNDWD 358 (597)
T ss_dssp TCCCSEEECCSSCEE
T ss_pred cCCCCEEEeeCCCCC
Confidence 444555555555444
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.7e-34 Score=273.70 Aligned_cols=252 Identities=30% Similarity=0.475 Sum_probs=224.0
Q ss_pred CCCCEEECcCCCCCc--cCCccccccccccCcEEEccC-CcceecCChhccCCCCCCeeeccCCccccccCccccCCCCC
Q 045304 136 KTLTYIDLSDNPLDG--ILPGTSVGNLSHSLEYFYMPN-CNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKL 212 (540)
Q Consensus 136 ~~L~~L~l~~n~l~~--~~~~~~~~~l~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 212 (540)
.+++.|++++|.+.+ .+| ..+..+ ++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-SSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-GGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccC-hhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 467888888888887 677 677777 7888888884 88888888889999999999999999988888889999999
Q ss_pred CeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCC-CCCEeeCCCCCCCC-CCccccCCCCCcEEECCC
Q 045304 213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLA-SLRTLSLGSNELTS-IPLTFWNLKDILYLNFSS 290 (540)
Q Consensus 213 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~~ 290 (540)
++|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++ +|..+..++ |++|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999999988999999999999999999999888898888888 89999999999985 788888876 99999999
Q ss_pred CcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccC
Q 045304 291 NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIP 370 (540)
Q Consensus 291 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 370 (540)
|.+.+..|..+..+++|+.|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 999999999999999999999999999977766 7888999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCeEEcccCcceee
Q 045304 371 VSLEKLSYLEDLNLSFNKLAGE 392 (540)
Q Consensus 371 ~~~~~~~~L~~l~l~~n~l~~~ 392 (540)
.. ..+++|+.+++++|+..+.
T Consensus 286 ~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 286 QG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CS-TTGGGSCGGGTCSSSEEES
T ss_pred CC-ccccccChHHhcCCCCccC
Confidence 86 7899999999999985443
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.8e-32 Score=266.43 Aligned_cols=295 Identities=20% Similarity=0.208 Sum_probs=170.7
Q ss_pred CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 045304 35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL 114 (540)
Q Consensus 35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 114 (540)
+++.++++++.++ .+|..+ .++|+.|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 6777777777776 566544 367777777777777666666777777777777777777666777777777777777
Q ss_pred cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcce--ecCChhccCCCCCCeee
Q 045304 115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS--GGIPEEISNLTNLIIIY 192 (540)
Q Consensus 115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~ 192 (540)
++|.++..+ ..+. ++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+. +..+..+..+++|++|+
T Consensus 108 s~n~l~~l~------~~~~--~~L~~L~l~~n~l~~~~~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 108 SKNQLKELP------EKMP--KTLQELRVHENEITKVRK-SVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CSSCCSBCC------SSCC--TTCCEEECCSSCCCBBCH-HHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCcCCccC------hhhc--ccccEEECCCCcccccCH-hHhcCC-ccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 777766532 2222 566666666666654433 334444 45555555555553 24445555555666666
Q ss_pred ccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC
Q 045304 193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS 272 (540)
Q Consensus 193 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 272 (540)
+++|.++. +|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|.++.
T Consensus 178 l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 254 (330)
T 1xku_A 178 IADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254 (330)
T ss_dssp CCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS
T ss_pred CCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc
Confidence 66555552 333222 455555555555555545555555555555555555555544455555555555555555555
Q ss_pred CCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcc--cCCcccC
Q 045304 273 IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG--SIPYSIG 350 (540)
Q Consensus 273 ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~ 350 (540)
+|..+..+++|++|++++|++++..+..+.... .......++.+++++|.+.. ..|..+.
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcc------------------cccccccccceEeecCcccccccCccccc
Confidence 555555555555555555555433333222110 00123566777777776653 4456677
Q ss_pred CCCCCCEEECCCCc
Q 045304 351 DLISLKSLNLSNNN 364 (540)
Q Consensus 351 ~l~~L~~L~l~~n~ 364 (540)
.+.+++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 77777777777764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2e-32 Score=266.34 Aligned_cols=287 Identities=21% Similarity=0.259 Sum_probs=164.4
Q ss_pred CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 045304 35 TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTL 114 (540)
Q Consensus 35 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 114 (540)
+++.++++++.++ .+|..+ .++|+.|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6777888877776 677655 367778888888777666667777778888888877777777777777777777777
Q ss_pred cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcce--ecCChhccCCCCCCeee
Q 045304 115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS--GGIPEEISNLTNLIIIY 192 (540)
Q Consensus 115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~ 192 (540)
++|.++..+ ..+. ++|++|++++|.+.+..+ ..+..+ ++|++|++++|.+. +..+..+..+ +|++|+
T Consensus 110 ~~n~l~~l~------~~~~--~~L~~L~l~~n~i~~~~~-~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 110 SKNHLVEIP------PNLP--SSLVELRIHDNRIRKVPK-GVFSGL-RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp CSSCCCSCC------SSCC--TTCCEEECCSSCCCCCCS-GGGSSC-SSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCB
T ss_pred CCCcCCccC------cccc--ccCCEEECCCCccCccCH-hHhCCC-ccCCEEECCCCccccCCCCcccccCC-ccCEEE
Confidence 777776532 2222 566666666666654333 333434 44555555554443 2333344444 444455
Q ss_pred ccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC
Q 045304 193 LGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS 272 (540)
Q Consensus 193 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 272 (540)
+++|++++ +|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.+++
T Consensus 179 l~~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 179 ISEAKLTG-------------------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp CCSSBCSS-------------------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred CcCCCCCc-------------------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 55444442 333222 344455555555544444444455555555555555544
Q ss_pred CCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcccccc------CCCCcEEeCcCccCc--c
Q 045304 273 IPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGS------LKGLQYLFVGYNRLQ--G 343 (540)
Q Consensus 273 ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~ 343 (540)
++. .+..+++|++|++++|++. .+|..+..+++|+.|++++|.+++..+..|.. ...|+.|++++|.+. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 332 3444455555555555554 34444555555555555555555444444432 355777777777766 4
Q ss_pred cCCcccCCCCCCCEEECCCCc
Q 045304 344 SIPYSIGDLISLKSLNLSNNN 364 (540)
Q Consensus 344 ~~~~~~~~l~~L~~L~l~~n~ 364 (540)
..|..+..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 566677777777778777764
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=6.9e-32 Score=262.49 Aligned_cols=287 Identities=21% Similarity=0.293 Sum_probs=230.7
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCC
Q 045304 60 NLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLT 139 (540)
Q Consensus 60 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~ 139 (540)
+++.++++++.++ .+|..+ .++|++|++++|.+.+..+..|.++++|++|++++|.++.. .+..+.++++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-----HEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CGGGSTTCTTCC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-----CHhHhhCcCCCC
Confidence 6888999888887 566655 36888899988888877777888888888888888888764 456678888888
Q ss_pred EEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeC
Q 045304 140 YIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLAD 219 (540)
Q Consensus 140 ~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 219 (540)
+|++++|.+... | ..+. ++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 106 ~L~L~~n~l~~l-~--------------------------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 106 KLYISKNHLVEI-P--------------------------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp EEECCSSCCCSC-C--------------------------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred EEECCCCcCCcc-C--------------------------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence 888888877532 2 1111 5667777777777655555677777777777777
Q ss_pred cccc--CcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC-ccccCCCCCcEEECCCCcccCC
Q 045304 220 NKLE--GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGP 296 (540)
Q Consensus 220 n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip-~~~~~l~~L~~L~L~~n~l~~~ 296 (540)
|.++ +..|..+..+ +|++|++++|.+++ +|..+. ++|+.|++++|.+++++ ..+..+++|++|++++|.+.+.
T Consensus 157 n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~ 232 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI 232 (332)
T ss_dssp CCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred CccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence 7774 3566777777 89999999999986 555543 79999999999999965 6788999999999999999998
Q ss_pred CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCC------CCCCCEEECCCCcCc--cc
Q 045304 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD------LISLKSLNLSNNNLS--GT 368 (540)
Q Consensus 297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~~ 368 (540)
.+..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..+..+.. ..+|+.|++++|.+. +.
T Consensus 233 ~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 233 ENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp CTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred ChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 8889999999999999999998 78888999999999999999999777766654 367899999999987 66
Q ss_pred cCccccCCCCCCeEEcccCc
Q 045304 369 IPVSLEKLSYLEDLNLSFNK 388 (540)
Q Consensus 369 ~~~~~~~~~~L~~l~l~~n~ 388 (540)
.|..+..++.|+.+++++|+
T Consensus 312 ~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 312 QPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CGGGGTTBCCSTTEEC----
T ss_pred Ccccccccchhhhhhccccc
Confidence 77889999999999999885
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.2e-31 Score=256.77 Aligned_cols=288 Identities=20% Similarity=0.280 Sum_probs=233.3
Q ss_pred CCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 045304 10 RNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLE 89 (540)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 89 (540)
.+++.++++++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+.++++|++|+
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 38999999999998 5676553 78999999999998 56665558999999999999999988899999999999999
Q ss_pred ccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCc--cCCccccccccccCcEE
Q 045304 90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDG--ILPGTSVGNLSHSLEYF 167 (540)
Q Consensus 90 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~~L~~L 167 (540)
+++|.++ .+|..+. ++|++|++++|.+... .+..+.++++|+.|++++|.+.. ..+ ..+..+ ++|++|
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~~l-~~L~~L 176 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKV-----RKSVFNGLNQMIVVELGTNPLKSSGIEN-GAFQGM-KKLSYI 176 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBB-----CHHHHTTCTTCCEEECCSSCCCGGGBCT-TGGGGC-TTCCEE
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCccccc-----CHhHhcCCccccEEECCCCcCCccCcCh-hhccCC-CCcCEE
Confidence 9999998 4555543 7999999999999875 44568899999999999999864 444 567777 899999
Q ss_pred EccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCc
Q 045304 168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFS 247 (540)
Q Consensus 168 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 247 (540)
++++|.+.. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 177 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 177 RIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 999999874 565554 89999999999999888899999999999999999999888878999999999999999998
Q ss_pred cccCccCCCCCCCCEeeCCCCCCCCCCcccc-C------CCCCcEEECCCCcccC--CCccccccccCcceEEcccc
Q 045304 248 RSIPACFSNLASLRTLSLGSNELTSIPLTFW-N------LKDILYLNFSSNFLTG--PLPLEIENLKVLVGIDFSVN 315 (540)
Q Consensus 248 ~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~-~------l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n 315 (540)
.+|..+..+++|++|++++|.+++++.... . .+.++.+++++|.+.. ..|..+..+..++.+++++|
T Consensus 254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 788889999999999999999999876422 2 2455556666655532 23334444444444444443
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.7e-35 Score=301.87 Aligned_cols=354 Identities=19% Similarity=0.186 Sum_probs=182.3
Q ss_pred CCCCEEeccCcccccCCCcc-ccCCCCCCEEEcccCcCccc----cchhhhcCCCCCCEEEccCCcccccCCcccc-CCC
Q 045304 10 RNLELLVLSHNKLVGVIPTK-VFNVSTLKVFEVSNNSLSGS----LSSIAGVRLPNLEVLRMRSNNFCGTIPHFIF-NAS 83 (540)
Q Consensus 10 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~ 83 (540)
++|++|+|++|++++..... +..+++|++|++++|.+++. ++..+ ..+++|++|++++|.+....+..+. .+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHH-HhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 56778888888776443333 66778888888888877632 33333 5678888888888877654333332 333
Q ss_pred ----CCCEEEccCCcccc----cCCccccCCCCCCEEECcCccccCCCCCcccccc-CCCCCCCCEEECcCCCCCccCC-
Q 045304 84 ----KLSLLELGDNSFSG----FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSS-LSNCKTLTYIDLSDNPLDGILP- 153 (540)
Q Consensus 84 ----~L~~L~L~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 153 (540)
+|++|++++|.++. .++..+..+++|++|++++|.+....... +... ....++|++|++++|.+++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL-LCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH-HHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH-HHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 57788887777763 34666777777777777777765421000 1111 2234567777777776654321
Q ss_pred --ccccccccccCcEEEccCCcceecCChhcc-----CCCCCCeeeccCCccccc----cCccccCCCCCCeeeeeCccc
Q 045304 154 --GTSVGNLSHSLEYFYMPNCNVSGGIPEEIS-----NLTNLIIIYLGGNKLNGS----IPITLSKLQKLQGLSLADNKL 222 (540)
Q Consensus 154 --~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~ 222 (540)
...+..+ ++|++|++++|.+.+..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.+
T Consensus 161 ~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 161 PLASVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHhhC-CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 0122223 4555566655555433332222 234555555555555532 234444555555555555554
Q ss_pred cCcC-----CccccCCCCCCeEEcCCCCCccc----cCccCCCCCCCCEeeCCCCCCCCC-----Ccccc-CCCCCcEEE
Q 045304 223 EGSI-----PNNICRLTELYELDLGSNKFSRS----IPACFSNLASLRTLSLGSNELTSI-----PLTFW-NLKDILYLN 287 (540)
Q Consensus 223 ~~~~-----p~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~i-----p~~~~-~l~~L~~L~ 287 (540)
.+.. +..+..+++|++|++++|.++.. ++..+..+++|+.|++++|.+++. ...+. ..++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 4321 11122345555555555555432 334444455555555555554431 11111 123555555
Q ss_pred CCCCcccCC----CccccccccCcceEEcccceeeecCcccccc-----CCCCcEEeCcCccCcc----cCCcccCCCCC
Q 045304 288 FSSNFLTGP----LPLEIENLKVLVGIDFSVNNFSGVIPTTIGS-----LKGLQYLFVGYNRLQG----SIPYSIGDLIS 354 (540)
Q Consensus 288 L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~l~~ 354 (540)
+++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~ 399 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 399 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence 555555433 2333344455555555555544433322221 3445555555555543 34444444455
Q ss_pred CCEEECCCCcCc
Q 045304 355 LKSLNLSNNNLS 366 (540)
Q Consensus 355 L~~L~l~~n~l~ 366 (540)
|++|++++|+++
T Consensus 400 L~~L~l~~N~i~ 411 (461)
T 1z7x_W 400 LRELDLSNNCLG 411 (461)
T ss_dssp CCEEECCSSSCC
T ss_pred ccEEECCCCCCC
Confidence 555555555444
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=1.2e-35 Score=302.96 Aligned_cols=357 Identities=20% Similarity=0.193 Sum_probs=269.3
Q ss_pred CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccc----cCCccccCCCCCCEEEccCCcccccCCccc-cCCC-
Q 045304 34 STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCG----TIPHFIFNASKLSLLELGDNSFSGFIPDTF-GNLR- 107 (540)
Q Consensus 34 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~-~~l~- 107 (540)
++|++|++++|.++......++..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5688999999988754444445788999999999998874 346667788999999999998876544333 3344
Q ss_pred ---CCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccc----ccccCcEEEccCCcceec---
Q 045304 108 ---NLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGN----LSHSLEYFYMPNCNVSGG--- 177 (540)
Q Consensus 108 ---~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----l~~~L~~L~l~~~~~~~~--- 177 (540)
+|++|++++|.+...... .++..+..+++|++|++++|.+....+ ..+.. ..++|++|++++|.+++.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCG-VLSSTLRTLPTLQELHLSDNLLGDAGL-QLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHH-HHHHHTTSCTTCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred CCCceeEEEccCCCCCHHHHH-HHHHHHccCCceeEEECCCCcCchHHH-HHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 699999999987753211 156778889999999999998865322 22211 114699999999988764
Q ss_pred -CChhccCCCCCCeeeccCCccccccCcccc-----CCCCCCeeeeeCccccCc----CCccccCCCCCCeEEcCCCCCc
Q 045304 178 -IPEEISNLTNLIIIYLGGNKLNGSIPITLS-----KLQKLQGLSLADNKLEGS----IPNNICRLTELYELDLGSNKFS 247 (540)
Q Consensus 178 -~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~ 247 (540)
++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 456677789999999999988755444443 356899999999988863 5667778899999999999887
Q ss_pred ccc-----CccCCCCCCCCEeeCCCCCCCC-----CCccccCCCCCcEEECCCCcccCCCcccccc-----ccCcceEEc
Q 045304 248 RSI-----PACFSNLASLRTLSLGSNELTS-----IPLTFWNLKDILYLNFSSNFLTGPLPLEIEN-----LKVLVGIDF 312 (540)
Q Consensus 248 ~~~-----~~~~~~l~~L~~L~l~~n~l~~-----ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~l 312 (540)
+.. +..+..+++|+.|++++|.++. ++..+..+++|++|++++|.+.+..+..+.. .++|+.|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 532 3334467899999999999887 5677777899999999999887554444433 268999999
Q ss_pred ccceeeec----CccccccCCCCcEEeCcCccCcccCCcccCC-----CCCCCEEECCCCcCcc----ccCccccCCCCC
Q 045304 313 SVNNFSGV----IPTTIGSLKGLQYLFVGYNRLQGSIPYSIGD-----LISLKSLNLSNNNLSG----TIPVSLEKLSYL 379 (540)
Q Consensus 313 ~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~----~~~~~~~~~~~L 379 (540)
++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 99998865 4566777899999999999988654443332 6789999999999986 677788888999
Q ss_pred CeEEcccCcceee
Q 045304 380 EDLNLSFNKLAGE 392 (540)
Q Consensus 380 ~~l~l~~n~l~~~ 392 (540)
+.|++++|++++.
T Consensus 401 ~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 401 RELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSSCCHH
T ss_pred cEEECCCCCCCHH
Confidence 9999999988653
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.8e-29 Score=244.20 Aligned_cols=225 Identities=21% Similarity=0.266 Sum_probs=167.0
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
..++.|++++|.+. .+|+.+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34555555555555 45555666666666666666666 55666666666666666666666 55666666666666666
Q ss_pred CCCCCccccCccCC---------CCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEc
Q 045304 242 GSNKFSRSIPACFS---------NLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDF 312 (540)
Q Consensus 242 ~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 312 (540)
++|++.+.+|..+. .+++|++|++++|.++.+|..+..+++|++|++++|.+.+ +|..+..+++|+.|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEEC
Confidence 66666666665544 3788888888888888888778888888888888888874 5556788888888888
Q ss_pred ccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcce
Q 045304 313 SVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA 390 (540)
Q Consensus 313 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~ 390 (540)
++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+..+++|+.+++..+.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888888888766543
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.8e-29 Score=241.26 Aligned_cols=281 Identities=20% Similarity=0.257 Sum_probs=183.9
Q ss_pred CCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCccccc--CCccccCCCCCCEEE
Q 045304 12 LELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGT--IPHFIFNASKLSLLE 89 (540)
Q Consensus 12 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~ 89 (540)
-+.++.+++.++ .+|..+. ++|++|++++|.++ .+|..++..+++|++|++++|.++.. .+..+..+++|++|+
T Consensus 9 ~~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CCEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 357888888887 5665443 68888999888887 77877777888899999988887732 356667788888888
Q ss_pred ccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEc
Q 045304 90 LGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYM 169 (540)
Q Consensus 90 L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l 169 (540)
+++|.+.. +|..+..+++|++|++++|.+...+. ...+..+++|++|++++|.+.+.
T Consensus 85 Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~------------------ 141 (306)
T 2z66_A 85 LSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTHTRVA------------------ 141 (306)
T ss_dssp CCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT----TTTTTTCTTCCEEECTTSCCEEC------------------
T ss_pred CCCCcccc-ChhhcCCCCCCCEEECCCCccccccc----chhhhhccCCCEEECCCCcCCcc------------------
Confidence 88888874 56667888888888888888776421 12455666666666666655443
Q ss_pred cCCcceecCChhccCCCCCCeeeccCCcccc-ccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcc
Q 045304 170 PNCNVSGGIPEEISNLTNLIIIYLGGNKLNG-SIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSR 248 (540)
Q Consensus 170 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 248 (540)
.+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 142 --------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 142 --------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp --------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred --------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 34445555666666666666654 455556666666666666666665556666666666666666666665
Q ss_pred ccCccCCCCCCCCEeeCCCCCCCC-CCccccCCC-CCcEEECCCCcccCCCc--cccccccCcceEEcccceeeecCccc
Q 045304 249 SIPACFSNLASLRTLSLGSNELTS-IPLTFWNLK-DILYLNFSSNFLTGPLP--LEIENLKVLVGIDFSVNNFSGVIPTT 324 (540)
Q Consensus 249 ~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~-~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~ 324 (540)
..+..+..+++|+.|++++|.+++ .|..+..++ +|++|++++|.+.+..+ .....+...+.+.+..+.+....|..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 555556666666666666666666 444555553 67777777777765422 11222333444455556666666666
Q ss_pred ccc
Q 045304 325 IGS 327 (540)
Q Consensus 325 ~~~ 327 (540)
+..
T Consensus 294 ~~g 296 (306)
T 2z66_A 294 KQG 296 (306)
T ss_dssp GTT
T ss_pred hCC
Confidence 544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.2e-29 Score=239.35 Aligned_cols=281 Identities=19% Similarity=0.238 Sum_probs=217.7
Q ss_pred CEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc--CCccccCCCCCCEEEC
Q 045304 37 KVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF--IPDTFGNLRNLNKVTL 114 (540)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~l 114 (540)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 46777777776 677654 36788888888877744444567777888888887777632 2455566777777777
Q ss_pred cCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCC-hhccCCCCCCeeec
Q 045304 115 YNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP-EEISNLTNLIIIYL 193 (540)
Q Consensus 115 ~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l 193 (540)
++|.+.. ++..+..+++|++|++++|.+ .+..+ ..+..+++|++|++
T Consensus 86 s~n~i~~------l~~~~~~l~~L~~L~l~~n~l--------------------------~~~~~~~~~~~l~~L~~L~l 133 (306)
T 2z66_A 86 SFNGVIT------MSSNFLGLEQLEHLDFQHSNL--------------------------KQMSEFSVFLSLRNLIYLDI 133 (306)
T ss_dssp CSCSEEE------EEEEEETCTTCCEEECTTSEE--------------------------ESSTTTTTTTTCTTCCEEEC
T ss_pred CCCcccc------ChhhcCCCCCCCEEECCCCcc--------------------------cccccchhhhhccCCCEEEC
Confidence 7776654 333455555555555555544 33322 45778899999999
Q ss_pred cCCccccccCccccCCCCCCeeeeeCccccC-cCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC
Q 045304 194 GGNKLNGSIPITLSKLQKLQGLSLADNKLEG-SIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS 272 (540)
Q Consensus 194 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 272 (540)
++|.+.+..+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+++
T Consensus 134 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 213 (306)
T 2z66_A 134 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 213 (306)
T ss_dssp TTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc
Confidence 9999998888899999999999999999987 678899999999999999999999889999999999999999999999
Q ss_pred CCc-cccCCCCCcEEECCCCcccCCCccccccc-cCcceEEcccceeeecCcc--ccccCCCCcEEeCcCccCcccCCcc
Q 045304 273 IPL-TFWNLKDILYLNFSSNFLTGPLPLEIENL-KVLVGIDFSVNNFSGVIPT--TIGSLKGLQYLFVGYNRLQGSIPYS 348 (540)
Q Consensus 273 ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (540)
++. .+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+++..+. ....+...+.+.+..+.+....|..
T Consensus 214 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 214 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp CCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred cChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 765 67889999999999999999999999888 4999999999999876431 1222344556667778888888887
Q ss_pred cCCCC
Q 045304 349 IGDLI 353 (540)
Q Consensus 349 ~~~l~ 353 (540)
+.+.+
T Consensus 294 ~~g~~ 298 (306)
T 2z66_A 294 KQGMP 298 (306)
T ss_dssp GTTCB
T ss_pred hCCce
Confidence 76643
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-29 Score=247.15 Aligned_cols=276 Identities=18% Similarity=0.198 Sum_probs=146.6
Q ss_pred CCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 045304 9 LRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLL 88 (540)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 88 (540)
|+.....+++++.++ .+|..+. ++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 444555666666666 4454443 36666666666666 4444444566666666666666666556666666666666
Q ss_pred EccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCC-CCccCCccccccccccCcEE
Q 045304 89 ELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP-LDGILPGTSVGNLSHSLEYF 167 (540)
Q Consensus 89 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~~L~~L 167 (540)
++++|.+++..+..|+++++|++|++++|.+...+. ...+..+++|++|++++|. +....+ ..+..+ ++|++|
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l-~~L~~L 179 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE----TSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGL-TFLEEL 179 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS----SCSCTTCTTCCEEEEEESSSCCEECT-TTTTTC-CEEEEE
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc----hhhhccCCCCcEEECCCCccccccCH-HHccCC-CCCCEE
Confidence 666666665444446666666666666666664321 0235566666666666663 333322 344444 456666
Q ss_pred EccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcccc---CCCCCCeEEcCCC
Q 045304 168 YMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC---RLTELYELDLGSN 244 (540)
Q Consensus 168 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~---~l~~L~~L~l~~n 244 (540)
++++|.+.+..|..+..+++|++|++++|.+....+..+..+++|+.|++++|.+++..+..+. ....++.++++.+
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 6666666555555566666666666666655432222233455566666665555543332221 2334444444444
Q ss_pred CCcc----ccCccCCCCCCCCEeeCCCCCCCCCCcc-ccCCCCCcEEECCCCccc
Q 045304 245 KFSR----SIPACFSNLASLRTLSLGSNELTSIPLT-FWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 245 ~l~~----~~~~~~~~l~~L~~L~l~~n~l~~ip~~-~~~l~~L~~L~L~~n~l~ 294 (540)
.+++ .+|..+..+++|+.|++++|.++.+|.. +..+++|++|++++|.+.
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 4443 1333444444444444444444444443 234444444444444443
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=5.4e-29 Score=240.84 Aligned_cols=224 Identities=18% Similarity=0.236 Sum_probs=162.5
Q ss_pred CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeee
Q 045304 137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS 216 (540)
Q Consensus 137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 216 (540)
.++.|++++|.+. .+| ..++.+ ++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 82 ~l~~L~L~~n~l~-~lp-~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFP-DQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TCCEEEEESSCCS-SCC-SCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ceeEEEccCCCch-hcC-hhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 3444444444444 223 233333 44555555555554 45555555566666666666655 4555566666666666
Q ss_pred eeCccccCcCCcccc---------CCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEE
Q 045304 217 LADNKLEGSIPNNIC---------RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLN 287 (540)
Q Consensus 217 l~~n~~~~~~p~~~~---------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~ 287 (540)
+++|.+.+.+|..+. .+++|++|++++|.++ .+|..+..+++|+.|++++|.++++|..+..+++|++|+
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD 235 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence 666655555555543 4788888888888887 677778888888888888888888888888888888888
Q ss_pred CCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304 288 FSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 288 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
+++|++.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888888888888888999999988888888888888899999999999888889999999999999888876554
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.4e-29 Score=244.86 Aligned_cols=287 Identities=19% Similarity=0.186 Sum_probs=191.5
Q ss_pred ccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCC
Q 045304 30 VFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNL 109 (540)
Q Consensus 30 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 109 (540)
-..|+.....+++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL 102 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence 345666777888899888 788765 3689999999999987666688899999999999999988888889999999
Q ss_pred CEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCc-ceecCChhccCCCCC
Q 045304 110 NKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCN-VSGGIPEEISNLTNL 188 (540)
Q Consensus 110 ~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~-~~~~~~~~l~~l~~L 188 (540)
++|++++|.++.. .+..+.++++|++|++++|.+.+......+..+ ++|++|++++|+ +.+..+..+..+++|
T Consensus 103 ~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 103 EHLDLSYNYLSNL-----SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp CEEECCSSCCSSC-----CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CEEECCCCcCCcC-----CHhHhCCCccCCEEECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCC
Confidence 9999999988864 223377888899999988888753221344555 567777777763 554455566666777
Q ss_pred CeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC
Q 045304 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268 (540)
Q Consensus 189 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 268 (540)
++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------ 244 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------ 244 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc------------
Confidence 77777777666666666666666667777666665322223334566666666666665543332211
Q ss_pred CCCCCCccccCCCCCcEEECCCCcccC----CCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCccc
Q 045304 269 ELTSIPLTFWNLKDILYLNFSSNFLTG----PLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS 344 (540)
Q Consensus 269 ~l~~ip~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 344 (540)
......++.++++++.+.+ .+|..+..+++|+.|++++|+++...+..|..+++|++|++++|.+++.
T Consensus 245 --------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 245 --------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred --------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 1122344455555554443 2455566677777777777777633333346777777777777777654
Q ss_pred CC
Q 045304 345 IP 346 (540)
Q Consensus 345 ~~ 346 (540)
.|
T Consensus 317 ~~ 318 (353)
T 2z80_A 317 CP 318 (353)
T ss_dssp HH
T ss_pred CC
Confidence 43
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.9e-28 Score=243.58 Aligned_cols=231 Identities=26% Similarity=0.296 Sum_probs=170.2
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
+++++|++++|++.+..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56667777777776666667777777777777777777666677777777777777777777655556777777777777
Q ss_pred CCCCCccccCccCCCCCCCCEeeCCCC-CCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee
Q 045304 242 GSNKFSRSIPACFSNLASLRTLSLGSN-ELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG 319 (540)
Q Consensus 242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 319 (540)
++|.+....+..|..+++|+.|++++| .+..++. .+..+++|++|+|++|.+.+. | .+..+++|+.|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 777777666666777777777777773 4444554 466777777777777777643 3 46677778888888888887
Q ss_pred cCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 320 VIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 320 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
..|..|..+++|+.|++++|.+++..+..+..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+...
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 777778888888888888888887777778888888888888888886666677778888888888888766543
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.3e-31 Score=281.95 Aligned_cols=381 Identities=16% Similarity=0.143 Sum_probs=187.9
Q ss_pred cCCCCCCCEEeccCccc---ccCCCcccc------------CCCCCCEEEcccCcCccccchhhhcCCCC-CCEEEccCC
Q 045304 6 IGNLRNLELLVLSHNKL---VGVIPTKVF------------NVSTLKVFEVSNNSLSGSLSSIAGVRLPN-LEVLRMRSN 69 (540)
Q Consensus 6 ~~~l~~L~~L~L~~n~l---~~~~~~~~~------------~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~L~~n 69 (540)
+.++++|++|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..+...+++ |++|++++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 44566677777766432 133333333 56677777777776665444444222334 677777666
Q ss_pred c-ccc-cCCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEEC
Q 045304 70 N-FCG-TIPHFIFNASKLSLLELGDNSFSGF----IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDL 143 (540)
Q Consensus 70 ~-l~~-~~~~~l~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l 143 (540)
. ++. .++....++++|++|+|++|.+++. ++..+..+++|++|++++|.+++.... .++..+.++++|+.|++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPK-DLETIARNCRSLVSVKV 227 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHH-HHHHHHHHCTTCCEEEC
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHH-HHHHHHhhCCCCcEEec
Confidence 4 111 1122233566677777776666543 222344566666676666666532111 13333455666666666
Q ss_pred cCCCCCccCCccccccccccCcEEEccCCcc--------------------------eecCChhccCCCCCCeeeccCCc
Q 045304 144 SDNPLDGILPGTSVGNLSHSLEYFYMPNCNV--------------------------SGGIPEEISNLTNLIIIYLGGNK 197 (540)
Q Consensus 144 ~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~--------------------------~~~~~~~l~~l~~L~~L~l~~n~ 197 (540)
++|.+.+ ++ ..+..+ ++|+.|.++.+.. .+.+|..+..+++|++|++++|.
T Consensus 228 ~~~~~~~-l~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 228 GDFEILE-LV-GFFKAA-ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp SSCBGGG-GH-HHHHHC-TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred cCccHHH-HH-HHHhhh-hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 6666554 22 333334 4555555543211 12334444455555555555555
Q ss_pred cccccC-ccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC-----------CCCccc-cCccCCCCCCCCEee
Q 045304 198 LNGSIP-ITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS-----------NKFSRS-IPACFSNLASLRTLS 264 (540)
Q Consensus 198 l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~ 264 (540)
+++... ..+..+++|+.|+++++...+.++..+..+++|++|++++ +.+++. ++..+..+++|++|+
T Consensus 305 l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~ 384 (592)
T 3ogk_B 305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMA 384 (592)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEE
T ss_pred CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEE
Confidence 433222 2234555555555552222222223334455556666552 333322 111123355566666
Q ss_pred CCCCCCCC-CCcccc-CCCCCcEEECC----CCcccCC-----CccccccccCcceEEcccce--eeecCccccc-cCCC
Q 045304 265 LGSNELTS-IPLTFW-NLKDILYLNFS----SNFLTGP-----LPLEIENLKVLVGIDFSVNN--FSGVIPTTIG-SLKG 330 (540)
Q Consensus 265 l~~n~l~~-ip~~~~-~l~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~-~l~~ 330 (540)
++.|.+++ .+..+. .+++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+. .+++
T Consensus 385 l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~ 464 (592)
T 3ogk_B 385 VYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464 (592)
T ss_dssp EEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT
T ss_pred eecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc
Confidence 65555554 222222 25556666664 4444432 22234455666666665322 4433333332 2556
Q ss_pred CcEEeCcCccCcc-cCCcccCCCCCCCEEECCCCcCccc-cCccccCCCCCCeEEcccCcce
Q 045304 331 LQYLFVGYNRLQG-SIPYSIGDLISLKSLNLSNNNLSGT-IPVSLEKLSYLEDLNLSFNKLA 390 (540)
Q Consensus 331 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~l~ 390 (540)
|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|+++
T Consensus 465 L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred ceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 6666666666654 2333445566666666666665533 2223345566666666666644
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.3e-27 Score=239.65 Aligned_cols=230 Identities=26% Similarity=0.287 Sum_probs=152.9
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
.+++.|++++|++.+..+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45555566555555555556666666666666666666555556666666666666666666544455666666666666
Q ss_pred CCCCCccccCccCCCCCCCCEeeCCCC-CCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeee
Q 045304 242 GSNKFSRSIPACFSNLASLRTLSLGSN-ELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSG 319 (540)
Q Consensus 242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 319 (540)
++|.+....+..|..+++|+.|++++| .+..++. .+..+++|++|+|++|.+.. +| .+..+++|+.|+|++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 666666555556666666666666663 3334444 45566666677777666663 33 35666777777777777777
Q ss_pred cCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeC
Q 045304 320 VIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEI 393 (540)
Q Consensus 320 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 393 (540)
..|..|..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++.+..
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence 76777777777777777777777777777777777777777777777666666777777777777777776544
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.3e-28 Score=232.23 Aligned_cols=223 Identities=23% Similarity=0.284 Sum_probs=120.3
Q ss_pred CEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeee
Q 045304 139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLA 218 (540)
Q Consensus 139 ~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 218 (540)
+.++.+++.+... | .. +++++++|++++|.+.+..+..+..+++|++|++++|.+++..|..|..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~i-p-~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-P-VG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSC-C-TT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccC-C-cC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 4566666655543 2 11 12456666666666665555556666666666666666665555556666666666666
Q ss_pred Ccc-ccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCC
Q 045304 219 DNK-LEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGP 296 (540)
Q Consensus 219 ~n~-~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~ 296 (540)
+|. +....|..+..+++|++|++++|.+++..+..|..+++|++|++++|.++.++. .+..+++|++|++++|.+.+.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 664 444445555566666666666666655555555555666666666665555443 244455555555555555544
Q ss_pred CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
.+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 4444444455555555555554444444444445555555555544433344444444555555544444
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.9e-28 Score=231.55 Aligned_cols=254 Identities=20% Similarity=0.213 Sum_probs=145.3
Q ss_pred CEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcC
Q 045304 37 KVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYN 116 (540)
Q Consensus 37 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 116 (540)
++++.+++.++ .+|..+ .++|+.|++++|.+++..+..+.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45555555555 455432 34566666666666555445556666666666666666555555566666666666666
Q ss_pred cc-ccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccC
Q 045304 117 NY-LTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195 (540)
Q Consensus 117 n~-~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 195 (540)
|. +... .+..+..+++|++|++++|.+.+. .|..+..+++|++|++++
T Consensus 90 n~~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~~~l~~L~~L~l~~ 138 (285)
T 1ozn_A 90 NAQLRSV-----DPATFHGLGRLHTLHLDRCGLQEL--------------------------GPGLFRGLAALQYLYLQD 138 (285)
T ss_dssp CTTCCCC-----CTTTTTTCTTCCEEECTTSCCCCC--------------------------CTTTTTTCTTCCEEECCS
T ss_pred CCCcccc-----CHHHhcCCcCCCEEECCCCcCCEE--------------------------CHhHhhCCcCCCEEECCC
Confidence 54 4432 123344555555555555544432 233344455555555555
Q ss_pred CccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc
Q 045304 196 NKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL 275 (540)
Q Consensus 196 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~ 275 (540)
|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.++++|.
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 55554444455566666666666666664444456666666667776666666666666667777777777777776554
Q ss_pred -cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccc
Q 045304 276 -TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIG 326 (540)
Q Consensus 276 -~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 326 (540)
.+..+++|++|++++|.+....+.. .....++.+..+.+.+....|..+.
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGT
T ss_pred HHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhC
Confidence 3666777777777777766443321 1112334445566666666666554
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.7e-27 Score=239.01 Aligned_cols=229 Identities=23% Similarity=0.227 Sum_probs=193.2
Q ss_pred CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL 215 (540)
Q Consensus 136 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 215 (540)
++++.|++++|.+.+..+ ..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~-~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQA-DTFRHL-HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECT-TTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECH-HHcCCC-CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 456666666666666555 555555 667777777777777777788888899999999999887777778889999999
Q ss_pred eeeCccccCcCCccccCCCCCCeEEcCCC-CCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304 216 SLADNKLEGSIPNNICRLTELYELDLGSN-KFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 216 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~ 294 (540)
++++|.+....+..|..+++|++|++++| .+....+..|..+++|+.|++++|.++++| .+..+++|++|+|++|.+.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCS
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCc
Confidence 99999988766678889999999999985 444444456889999999999999999987 4778899999999999999
Q ss_pred CCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 295 GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 295 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
+..|..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9889999999999999999999999999999999999999999999998888888999999999999998763
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4e-27 Score=237.94 Aligned_cols=229 Identities=23% Similarity=0.229 Sum_probs=191.4
Q ss_pred CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL 215 (540)
Q Consensus 136 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 215 (540)
++++.|+|++|.+.+..+ ..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|+++...+..|..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~-~~~~~l-~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKV-NSFKHL-RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECT-TTTSSC-SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCH-HHhhCC-CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 455666666666655544 445555 567777777777766666778888899999999999887666778889999999
Q ss_pred eeeCccccCcCCccccCCCCCCeEEcCCCC-CccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc
Q 045304 216 SLADNKLEGSIPNNICRLTELYELDLGSNK-FSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 216 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~ 294 (540)
++++|.+....+..|..+++|++|++++|+ +....+..|..+++|+.|++++|.++.+|. +..+++|++|+|++|.+.
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccC
Confidence 999999887777788899999999999854 444445578899999999999999999884 778899999999999999
Q ss_pred CCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 295 GPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 295 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
+..|..+..+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 8889999999999999999999999999999999999999999999998888888999999999999998763
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.1e-26 Score=241.40 Aligned_cols=265 Identities=24% Similarity=0.337 Sum_probs=170.9
Q ss_pred CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304 11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL 90 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 90 (540)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.++ .+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 5788888888887 6676654 78888888888887 5665 4678888888888877 4554 5678888888
Q ss_pred cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEcc
Q 045304 91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMP 170 (540)
Q Consensus 91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~ 170 (540)
++|.+++. |. .+++|++|++++|.++..+ . .+++|++|++++|.+.+. | . ...+|+.|+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp------~---~l~~L~~L~Ls~N~l~~l-~-~----~~~~L~~L~L~ 169 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSLP------V---LPPGLQELSVSDNQLASL-P-A----LPSELCKLWAY 169 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSCCC------C---CCTTCCEEECCSSCCSCC-C-C----CCTTCCEEECC
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCcCC------C---CCCCCCEEECcCCcCCCc-C-C----ccCCCCEEECC
Confidence 88887753 33 5677888888888777642 2 236778888888777653 2 1 12567777777
Q ss_pred CCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCcccc
Q 045304 171 NCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSI 250 (540)
Q Consensus 171 ~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 250 (540)
+|.+++ +| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|.. +++|++|++++|.+++ +
T Consensus 170 ~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 170 NNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp SSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-C
T ss_pred CCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-C
Confidence 776664 44 345667777777776663 332 2356666666666666 34432 3566666666666654 3
Q ss_pred CccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccc
Q 045304 251 PACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIG 326 (540)
Q Consensus 251 ~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 326 (540)
| ..+++|+.|++++|.++.+|. .+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.+++..|..+.
T Consensus 237 p---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 237 P---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred C---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 3 334566666666666666665 3456666666666666 4455566666666666666666655555444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=3.4e-29 Score=241.55 Aligned_cols=257 Identities=18% Similarity=0.174 Sum_probs=146.8
Q ss_pred CCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECc
Q 045304 36 LKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLY 115 (540)
Q Consensus 36 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 115 (540)
++..+++.+.+. ..+..++..+++|+.|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 344555666654 4444555566677777777777776666667777777777777777765443 6777777777777
Q ss_pred CccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccC
Q 045304 116 NNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGG 195 (540)
Q Consensus 116 ~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 195 (540)
+|.+++. + ..++|++|++++|.+.+..+ .. + ++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 89 ~n~l~~l------~----~~~~L~~L~l~~n~l~~~~~-~~---~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~ 153 (317)
T 3o53_A 89 NNYVQEL------L----VGPSIETLHAANNNISRVSC-SR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153 (317)
T ss_dssp SSEEEEE------E----ECTTCCEEECCSSCCSEEEE-CC---C-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT
T ss_pred CCccccc------c----CCCCcCEEECCCCccCCcCc-cc---c-CCCCEEECCCCCCCCccchhhhccCCCCEEECCC
Confidence 7776642 1 23667777777777665432 11 2 4455555555555554444555556666666666
Q ss_pred CccccccCccc-cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC
Q 045304 196 NKLNGSIPITL-SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP 274 (540)
Q Consensus 196 n~l~~~~~~~l-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip 274 (540)
|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++. |..+..+++|+.|++++|.++.+|
T Consensus 154 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 154 NEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchh
Confidence 66655444444 2455566666665555533 1 122355555555555555533 233555555555555555555555
Q ss_pred ccccCCCCCcEEECCCCccc-CCCccccccccCcceEEcc
Q 045304 275 LTFWNLKDILYLNFSSNFLT-GPLPLEIENLKVLVGIDFS 313 (540)
Q Consensus 275 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~ 313 (540)
..+..+++|+.|++++|.+. +.++..+..++.|+.++++
T Consensus 231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 55555555555555555554 3444444444444444444
No 64
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.6e-30 Score=273.75 Aligned_cols=382 Identities=13% Similarity=0.077 Sum_probs=235.3
Q ss_pred CCCccccCCCCCCEEEcccCcCc---cccchh-----------hhcCCCCCCEEEccCCcccccCCccccCC--CCCCEE
Q 045304 25 VIPTKVFNVSTLKVFEVSNNSLS---GSLSSI-----------AGVRLPNLEVLRMRSNNFCGTIPHFIFNA--SKLSLL 88 (540)
Q Consensus 25 ~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~-----------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L 88 (540)
..+..+..+++|++|+++++... +.+|.. +...+++|++|+|++|.+++..+..+... .+|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 44456678899999999875421 222222 22378999999999999887766666653 459999
Q ss_pred EccCCc-ccc-cCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCcc----CCccccccccc
Q 045304 89 ELGDNS-FSG-FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGI----LPGTSVGNLSH 162 (540)
Q Consensus 89 ~L~~n~-~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~ 162 (540)
++++|. ++. .++....++++|++|+|++|.+++....+ +...+..+++|+.|++++|.+.+. ++ ..+..+ +
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~-~ 220 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW-LHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNC-R 220 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-HHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHC-T
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH-HHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhC-C
Confidence 999987 221 12233457899999999999887653222 334456789999999999998732 22 223445 7
Q ss_pred cCcEEEccCCcceecCChhccCCCCCCeeeccCCccc---cccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304 163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLN---GSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239 (540)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 239 (540)
+|++|++++|.+.+ +|..+..+++|++|+++..... +..+..+..+++|+.++++++.. +.+|..+..+++|++|
T Consensus 221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKL 298 (592)
T ss_dssp TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEE
T ss_pred CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEE
Confidence 99999999999875 6778888899999988753222 11222334444444444443221 2333344444444444
Q ss_pred EcCCCCCcc-------------------------ccCccCCCCCCCCEeeCCC-----------CCCCC--CCccccCCC
Q 045304 240 DLGSNKFSR-------------------------SIPACFSNLASLRTLSLGS-----------NELTS--IPLTFWNLK 281 (540)
Q Consensus 240 ~l~~n~l~~-------------------------~~~~~~~~l~~L~~L~l~~-----------n~l~~--ip~~~~~l~ 281 (540)
++++|.+++ .++..+..+++|+.|++++ +.++. ++.....++
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 444444332 2222223455666666662 34443 222234466
Q ss_pred CCcEEECCCCcccCCCcccccc-ccCcceEEcc----cceeeec-----CccccccCCCCcEEeCcCcc--CcccCCccc
Q 045304 282 DILYLNFSSNFLTGPLPLEIEN-LKVLVGIDFS----VNNFSGV-----IPTTIGSLKGLQYLFVGYNR--LQGSIPYSI 349 (540)
Q Consensus 282 ~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~ 349 (540)
+|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|+.|++++|. +++..+..+
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~ 458 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI 458 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence 7777777666666555555544 6677777775 4555542 33345567777777776433 554443333
Q ss_pred C-CCCCCCEEECCCCcCcc-ccCccccCCCCCCeEEcccCcceee-CCCC-CCCCCCCcccccCCC
Q 045304 350 G-DLISLKSLNLSNNNLSG-TIPVSLEKLSYLEDLNLSFNKLAGE-IPRG-GSFGNFSAESFEGNE 411 (540)
Q Consensus 350 ~-~l~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~l~~~-~p~~-~~~~~~~~~~~~~n~ 411 (540)
. .+++|++|++++|++++ .++..+..+++|+.|++++|++++. ++.. ..+.++..+.+.+|.
T Consensus 459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 3 36778888888888775 3344556778888888888886543 1211 234556666777665
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.8e-29 Score=240.60 Aligned_cols=247 Identities=17% Similarity=0.175 Sum_probs=124.0
Q ss_pred ccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcc-cccCCcccc-------CCCCCCEEEccCCcccccCCc
Q 045304 30 VFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNF-CGTIPHFIF-------NASKLSLLELGDNSFSGFIPD 101 (540)
Q Consensus 30 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~-------~l~~L~~L~L~~n~~~~~~~~ 101 (540)
++..++|+.|++++|.+ .+|..+... |+.|++++|.+ ...+|..+. ++++|++|++++|.+++.+|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 34455666666666666 455554322 66666666666 234444443 566666666666666666665
Q ss_pred cc--cCCCCCCEEECcCccccCCCCCccccccCCCC-----CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcc
Q 045304 102 TF--GNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC-----KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV 174 (540)
Q Consensus 102 ~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~ 174 (540)
.+ ..+++|++|++++|.+++.+ ..+..+ ++|++|++++|.+.+..+ ..++.+ ++|++|++++|++
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~~------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~-~~~~~l-~~L~~L~Ls~N~l 185 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATRD------AWLAELQQWLKPGLKVLSIAQAHSLNFSC-EQVRVF-PALSTLDLSDNPE 185 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSSS------SHHHHHHTTCCTTCCEEEEESCSCCCCCT-TTCCCC-SSCCEEECCSCTT
T ss_pred HHHHhcCCCccEEEccCCCCcchh------HHHHHHHHhhcCCCcEEEeeCCCCccchH-HHhccC-CCCCEEECCCCCc
Confidence 54 66666666666666666542 122222 667777777776655444 334444 4444444444444
Q ss_pred eec--CChhc--cCCCCCCeeeccCCcccc--ccC-ccccCCCCCCeeeeeCccccCcCC-ccccCCCCCCeEEcCCCCC
Q 045304 175 SGG--IPEEI--SNLTNLIIIYLGGNKLNG--SIP-ITLSKLQKLQGLSLADNKLEGSIP-NNICRLTELYELDLGSNKF 246 (540)
Q Consensus 175 ~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l 246 (540)
.+. ++..+ ..+++|++|++++|++++ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.+
T Consensus 186 ~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 332 12222 455555555555555542 111 222344455555555555544332 2233344444444444444
Q ss_pred ccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcc
Q 045304 247 SRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFL 293 (540)
Q Consensus 247 ~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l 293 (540)
+ .+|..+. ++|+.|++++|+++++|. +..+++|++|++++|++
T Consensus 266 ~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 266 K-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp S-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred C-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence 4 3333333 444444444444444433 33444444444444443
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.8e-29 Score=239.92 Aligned_cols=246 Identities=18% Similarity=0.203 Sum_probs=175.6
Q ss_pred CCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcc-eecCChhcc-------CCCCCCeeeccCCccccccCcc
Q 045304 134 NCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNV-SGGIPEEIS-------NLTNLIIIYLGGNKLNGSIPIT 205 (540)
Q Consensus 134 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~-~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~~ 205 (540)
..++|+.+++++|.+ .+| ..+. ..++.|++++|.+ ...+|..+. .+++|++|++++|++++.+|..
T Consensus 41 ~~~~L~~l~l~~n~l--~~p-~~~~---~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADL-GQFT---DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHCCTT--CCC-HHHH---HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeeccccc--ccH-HHHH---HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 334556666666666 344 2222 2366667777666 345565554 6777888888888887777766
Q ss_pred c--cCCCCCCeeeeeCccccCcCCccccCC-----CCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC---CCc
Q 045304 206 L--SKLQKLQGLSLADNKLEGSIPNNICRL-----TELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS---IPL 275 (540)
Q Consensus 206 l--~~l~~L~~L~l~~n~~~~~~p~~~~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---ip~ 275 (540)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|++++..|..|+.+++|+.|++++|.+.+ +|.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 6777888888888887765 6666665 778888888888877777778888888888888887665 233
Q ss_pred cc--cCCCCCcEEECCCCcccCC--Cc-cccccccCcceEEcccceeeecCc-cccccCCCCcEEeCcCccCcccCCccc
Q 045304 276 TF--WNLKDILYLNFSSNFLTGP--LP-LEIENLKVLVGIDFSVNNFSGVIP-TTIGSLKGLQYLFVGYNRLQGSIPYSI 349 (540)
Q Consensus 276 ~~--~~l~~L~~L~L~~n~l~~~--~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (540)
.+ ..+++|++|++++|.+.+. ++ ..+..+++|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 6778888888888887731 22 334566788888888888887664 44556788888888888888 667666
Q ss_pred CCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee
Q 045304 350 GDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 391 (540)
. ++|++|++++|++++. |. +..+++|+.|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5 7888888888888865 55 7788888888888888764
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=8.6e-29 Score=238.70 Aligned_cols=257 Identities=20% Similarity=0.212 Sum_probs=144.8
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCE
Q 045304 61 LEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTY 140 (540)
Q Consensus 61 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~ 140 (540)
++.++++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|++++|.+++. + .+..+++|++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~-~~~~l~~L~~ 84 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET------L-DLESLSTLRT 84 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE------E-EETTCTTCCE
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc------h-hhhhcCCCCE
Confidence 45556666666644445555667888888888888877777888888888888888887753 2 2777788888
Q ss_pred EECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCc
Q 045304 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADN 220 (540)
Q Consensus 141 L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 220 (540)
|++++|.+.+.. .. ++|++|++++|.+.+..+. .+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 85 L~Ls~n~l~~l~------~~-~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (317)
T 3o53_A 85 LDLNNNYVQELL------VG-PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (317)
T ss_dssp EECCSSEEEEEE------EC-TTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred EECcCCcccccc------CC-CCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence 888888765432 11 4566666666666544332 2445566666666665554555555555555555555
Q ss_pred cccCcCCccc-cCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCcc
Q 045304 221 KLEGSIPNNI-CRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL 299 (540)
Q Consensus 221 ~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~ 299 (540)
.+++..+..+ ..+++|++|++++|.+++. +. ...+++|+.|++++|.++++|..+..+++|++|++++|.+. .+|.
T Consensus 155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred CCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhh
Confidence 5554444433 2455555555555555433 11 22245555555555555554444444444555544444444 2333
Q ss_pred ccccccCcceEEcccceee-ecCccccccCCCCcEEeCc
Q 045304 300 EIENLKVLVGIDFSVNNFS-GVIPTTIGSLKGLQYLFVG 337 (540)
Q Consensus 300 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 337 (540)
.+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 3444444444444444444 3333333444444444433
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=5.2e-26 Score=236.37 Aligned_cols=267 Identities=26% Similarity=0.304 Sum_probs=147.0
Q ss_pred CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 045304 34 STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVT 113 (540)
Q Consensus 34 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 113 (540)
.++++|++++|.++ .+|..++ ++|+.|++++|.++ .+|. .+++|++|+|++|.+++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35777777777776 6666552 67777777777766 3444 45667777777777663 333 556667777
Q ss_pred CcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeec
Q 045304 114 LYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYL 193 (540)
Q Consensus 114 l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 193 (540)
+++|.+++. +. .+++|+.|++++|.+.+. |.. +++|++|++
T Consensus 108 Ls~N~l~~l------~~---~l~~L~~L~L~~N~l~~l---------------------------p~~---l~~L~~L~L 148 (622)
T 3g06_A 108 IFSNPLTHL------PA---LPSGLCKLWIFGNQLTSL---------------------------PVL---PPGLQELSV 148 (622)
T ss_dssp ECSCCCCCC------CC---CCTTCCEEECCSSCCSCC---------------------------CCC---CTTCCEEEC
T ss_pred CcCCcCCCC------CC---CCCCcCEEECCCCCCCcC---------------------------CCC---CCCCCEEEC
Confidence 766666653 11 345566666666655542 221 244444444
Q ss_pred cCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC
Q 045304 194 GGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI 273 (540)
Q Consensus 194 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i 273 (540)
++|.+++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++.+
T Consensus 149 s~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 149 SDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSL 216 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSC
T ss_pred cCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccccc
Confidence 4444442 221 22345555555555543 33 233455555555555543 2221 24555555555555555
Q ss_pred CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCC
Q 045304 274 PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLI 353 (540)
Q Consensus 274 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 353 (540)
|.. +++|++|++++|.+++ +| ..+++|+.|++++|.++. +|. .+++|+.|+|++|.++ .+|..+..++
T Consensus 217 ~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~ 284 (622)
T 3g06_A 217 PAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLS 284 (622)
T ss_dssp CCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred CCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence 532 2455555555555553 33 233556666666666552 333 3456666666666666 5566666666
Q ss_pred CCCEEECCCCcCccccCccccC
Q 045304 354 SLKSLNLSNNNLSGTIPVSLEK 375 (540)
Q Consensus 354 ~L~~L~l~~n~l~~~~~~~~~~ 375 (540)
+|+.|++++|++++..|..+..
T Consensus 285 ~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 285 SETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp TTCEEECCSCCCCHHHHHHHHH
T ss_pred ccCEEEecCCCCCCcCHHHHHh
Confidence 6666666666666665555443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=9.1e-27 Score=237.37 Aligned_cols=234 Identities=19% Similarity=0.183 Sum_probs=143.4
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCC
Q 045304 59 PNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTL 138 (540)
Q Consensus 59 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L 138 (540)
++|+.|+|++|.+++..|..+..+++|++|+|++|.+++..| +..+++|++|++++|.+++. + ..++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~----~~~~L 101 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------L----VGPSI 101 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------E----ECTTC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------C----CCCCc
Confidence 367777777777776666667777777777777777765544 66777777777777766643 1 12567
Q ss_pred CEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCcccc-CCCCCCeeee
Q 045304 139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLS-KLQKLQGLSL 217 (540)
Q Consensus 139 ~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l 217 (540)
++|++++|.+.+..+ . .+ ++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|+.|++
T Consensus 102 ~~L~L~~N~l~~~~~-~---~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 102 ETLHAANNNISRVSC-S---RG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CEEECCSSCCCCEEE-C---CC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECcCCcCCCCCc-c---cc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence 777777777665433 1 12 4566666666666665565666666666666666666665555554 5666666666
Q ss_pred eCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCccc-CC
Q 045304 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLT-GP 296 (540)
Q Consensus 218 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~-~~ 296 (540)
++|.+++.. .+..+++|++|+|++|.+++..| .|..+++|+.|++++|.++++|..+..+++|+.|++++|.+. +.
T Consensus 177 s~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 177 QYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence 666666442 23346666666666666664333 356666666666666666666665556666666666666555 44
Q ss_pred CccccccccCcceEEc
Q 045304 297 LPLEIENLKVLVGIDF 312 (540)
Q Consensus 297 ~~~~~~~l~~L~~L~l 312 (540)
+|..+..++.|+.+++
T Consensus 254 ~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred hHHHHHhCCCCcEEec
Confidence 4444444444444444
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=3.7e-27 Score=240.28 Aligned_cols=235 Identities=22% Similarity=0.205 Sum_probs=138.7
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccccc
Q 045304 82 ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLS 161 (540)
Q Consensus 82 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 161 (540)
+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++. .+ +..+++|++|++++|.+.+..+ .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~--l~~l~~L~~L~Ls~N~l~~l~~------~- 98 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----LD--LESLSTLRTLDLNNNYVQELLV------G- 98 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-----EE--CTTCTTCCEEECCSSEEEEEEE------C-
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-----cc--cccCCCCCEEEecCCcCCCCCC------C-
Confidence 34788999999888887778888888888888888888763 22 7778888888888887764322 1
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcccc-CCCCCCeEE
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELD 240 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~ 240 (540)
++|++|++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 4666666666666554332 235566666666666655555555566666666666666555555443 455666666
Q ss_pred cCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee-e
Q 045304 241 LGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS-G 319 (540)
Q Consensus 241 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 319 (540)
|++|.+++..+ +..+++|+.|++++|.++++|..+..+++|+.|+|++|.+.+ +|..+..+++|+.|++++|.+. +
T Consensus 176 Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 176 LQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp CTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCCccccccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 66665554422 223555555555555555554445555555555555555543 3334444444444444444444 3
Q ss_pred cCccccccCCCCcEEeC
Q 045304 320 VIPTTIGSLKGLQYLFV 336 (540)
Q Consensus 320 ~~~~~~~~l~~L~~L~l 336 (540)
.+|..+..++.|+.+++
T Consensus 253 ~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHhCCCCcEEec
Confidence 33333444433333333
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.1e-25 Score=210.71 Aligned_cols=209 Identities=24% Similarity=0.238 Sum_probs=145.4
Q ss_pred CCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeC
Q 045304 186 TNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSL 265 (540)
Q Consensus 186 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 265 (540)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666555555666666666666666666555556666667777777777666666666666777777777
Q ss_pred CCCCCCCCCc-cccCCCCCcEEECCCCcccCC-CccccccccCcceEEcccceeeecCccccccCCCCc----EEeCcCc
Q 045304 266 GSNELTSIPL-TFWNLKDILYLNFSSNFLTGP-LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQ----YLFVGYN 339 (540)
Q Consensus 266 ~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~n 339 (540)
++|.++.++. .+..+++|++|++++|.+.+. +|..+..+++|+.|++++|.+++..+..+..+++|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 7777766544 566667777777777777653 467777777777777777777776666666665565 7888888
Q ss_pred cCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCCC
Q 045304 340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIPR 395 (540)
Q Consensus 340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~ 395 (540)
.+++..+..+. ..+|+.|++++|++++..+..+..+++|+.+++++|++.+..|.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 88865554443 34788888888888866666678888888888888888877663
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.1e-28 Score=256.37 Aligned_cols=378 Identities=15% Similarity=0.146 Sum_probs=204.0
Q ss_pred cCCCCCCCEEeccCccccc---CCCc------------cccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCC-
Q 045304 6 IGNLRNLELLVLSHNKLVG---VIPT------------KVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSN- 69 (540)
Q Consensus 6 ~~~l~~L~~L~L~~n~l~~---~~~~------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n- 69 (540)
+.++++|+.|+++++.... ..|. ....+++|++|++++|.+++..+..+...+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4567889999999875321 1221 12467899999999998887666666446899999999988
Q ss_pred ccccc-CCccccCCCCCCEEEccCCcccccCCccc----cCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECc
Q 045304 70 NFCGT-IPHFIFNASKLSLLELGDNSFSGFIPDTF----GNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLS 144 (540)
Q Consensus 70 ~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~ 144 (540)
.++.. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. ..... ..+...+..+++|++|+++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~-~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSF-SALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCH-HHHHHHHHHCTTCCEEECC
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCH-HHHHHHHHhCCCCcEEecC
Confidence 44432 44445578999999999998776544333 367799999999886 11110 0122223457899999999
Q ss_pred CCCCCccCCccccccccccCcEEEccCCc-------cee-----------------------cCChhccCCCCCCeeecc
Q 045304 145 DNPLDGILPGTSVGNLSHSLEYFYMPNCN-------VSG-----------------------GIPEEISNLTNLIIIYLG 194 (540)
Q Consensus 145 ~n~l~~~~~~~~~~~l~~~L~~L~l~~~~-------~~~-----------------------~~~~~l~~l~~L~~L~l~ 194 (540)
+|...+.++ ..+..+ ++|+.|.+..+. +.+ .++..+..+++|++|+++
T Consensus 220 ~~~~~~~l~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 220 RAVPLEKLA-TLLQRA-PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp TTSCHHHHH-HHHHHC-TTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECT
T ss_pred CCCcHHHHH-HHHhcC-CcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEcc
Confidence 884333233 344445 678888755442 111 122222234555555555
Q ss_pred CCccccccC-ccccCCCCCCeeeeeCccccC-cCCccccCCCCCCeEEcCC---------CCCccccCccC-CCCCCCCE
Q 045304 195 GNKLNGSIP-ITLSKLQKLQGLSLADNKLEG-SIPNNICRLTELYELDLGS---------NKFSRSIPACF-SNLASLRT 262 (540)
Q Consensus 195 ~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~ 262 (540)
+|.+++... ..+..+++|++|++++| +.. .++.....+++|++|+++. +.+++.....+ ..+++|+.
T Consensus 298 ~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~ 376 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLES 376 (594)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCE
T ss_pred CCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHH
Confidence 555443211 12334555555555555 221 1111222355555555522 23322211111 12455555
Q ss_pred eeCCCCCCCC-CCccc-cCCCCCcEEECC--C----CcccCC-----CccccccccCcceEEcccceeeecCcccccc-C
Q 045304 263 LSLGSNELTS-IPLTF-WNLKDILYLNFS--S----NFLTGP-----LPLEIENLKVLVGIDFSVNNFSGVIPTTIGS-L 328 (540)
Q Consensus 263 L~l~~n~l~~-ip~~~-~~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l 328 (540)
|.+..|.+++ .+..+ ..+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..+.. +
T Consensus 377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~ 455 (594)
T 2p1m_B 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA 455 (594)
T ss_dssp EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHC
T ss_pred HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhc
Confidence 5555555554 11122 235556666665 2 233311 111234455666666654 444333333333 5
Q ss_pred CCCcEEeCcCccCcccCCccc-CCCCCCCEEECCCCcCccccCc-cccCCCCCCeEEcccCcc
Q 045304 329 KGLQYLFVGYNRLQGSIPYSI-GDLISLKSLNLSNNNLSGTIPV-SLEKLSYLEDLNLSFNKL 389 (540)
Q Consensus 329 ~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~l~l~~n~l 389 (540)
++|+.|++++|.+++..+..+ ..+++|+.|++++|.+++.... ....+++|+.|++++|++
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 566666666666554333333 4455666666666665433222 223355666666666654
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.2e-24 Score=205.48 Aligned_cols=207 Identities=18% Similarity=0.180 Sum_probs=179.6
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 56888888888887777778888899999999999988777778888999999999999998877788999999999999
Q ss_pred CCCCCccccCccCCCCCCCCEeeCCCCCCCC--CCccccCCCCCcEEECCCCcccCCCccccccccCcc----eEEcccc
Q 045304 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTS--IPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV----GIDFSVN 315 (540)
Q Consensus 242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~l~~n 315 (540)
++|.+.+..+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..+..+..+.+|+ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 9999988777788999999999999999987 688899999999999999999988778888777777 8999999
Q ss_pred eeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcccc
Q 045304 316 NFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTI 369 (540)
Q Consensus 316 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 369 (540)
.+++..+..+.. .+|+.|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 999776665554 48999999999999777777899999999999999998543
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4e-24 Score=201.09 Aligned_cols=205 Identities=26% Similarity=0.303 Sum_probs=138.7
Q ss_pred CCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCC
Q 045304 187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLG 266 (540)
Q Consensus 187 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 266 (540)
+.+.++++++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3455666666655 3443332 456666666666665555566666666666666666665555555666677777777
Q ss_pred CCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304 267 SNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI 345 (540)
Q Consensus 267 ~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (540)
+|.++.+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 777666554 3456667777777777777666666677777777777777777665666777778888888888877666
Q ss_pred CcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 346 PYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 346 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 6667777888888888888876666667777888888888777765443
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.9e-24 Score=204.92 Aligned_cols=205 Identities=23% Similarity=0.215 Sum_probs=159.9
Q ss_pred ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR 261 (540)
Q Consensus 182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 261 (540)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456677778888877777 4554443 5778888888888777677788888888888888888754332 6778888
Q ss_pred EeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304 262 TLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341 (540)
Q Consensus 262 ~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 341 (540)
+|++++|.++.+|..+..+++|++|++++|++++..+..|..+++|+.|++++|++++..+..|..+++|+.|+|++|++
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 88888888888888778888888888888888877777788888888888888888877777778888888888888888
Q ss_pred cccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceee
Q 045304 342 QGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGE 392 (540)
Q Consensus 342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~ 392 (540)
++..+..+..+++|+.|++++|+++ .+|..+..+++|+.+++++|++.+.
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 8666666778888888888888888 6677777777888888888877654
No 76
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.5e-27 Score=251.21 Aligned_cols=372 Identities=15% Similarity=0.095 Sum_probs=258.4
Q ss_pred CCCCCCCEEeccCcccccCCCcccc-CCCCCCEEEcccC-cCccccchhhhcCCCCCCEEEccCCcccccCCccc----c
Q 045304 7 GNLRNLELLVLSHNKLVGVIPTKVF-NVSTLKVFEVSNN-SLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFI----F 80 (540)
Q Consensus 7 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~ 80 (540)
..+++|++|+|++|.+++..+..+. .+++|++|++++| .+++.....+...+++|++|++++|.+++..+..+ .
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 4678999999999998877776675 6899999999998 45433233343679999999999999876544444 3
Q ss_pred CCCCCCEEEccCCc--cccc-CCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCC----------
Q 045304 81 NASKLSLLELGDNS--FSGF-IPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNP---------- 147 (540)
Q Consensus 81 ~l~~L~~L~L~~n~--~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~---------- 147 (540)
.+++|++|++++|. ++.. ++..+.++++|++|++++|..... ++..+..+++|+.|+++.+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 256 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-----LATLLQRAPQLEELGTGGYTAEVRPDVYSG 256 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-----HHHHHHHCTTCSEEECSBCCCCCCHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-----HHHHHhcCCcceEcccccccCccchhhHHH
Confidence 67799999999986 2211 222234579999999998822111 33445556666666654432
Q ss_pred ----------------CC----ccCCccccccccccCcEEEccCCcceecCC-hhccCCCCCCeeeccCCcccc-ccCcc
Q 045304 148 ----------------LD----GILPGTSVGNLSHSLEYFYMPNCNVSGGIP-EEISNLTNLIIIYLGGNKLNG-SIPIT 205 (540)
Q Consensus 148 ----------------l~----~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~-~~~~~ 205 (540)
+. ..++ .....+ ++|++|++++|.+.+... ..+..+++|++|++++| +.. .++..
T Consensus 257 l~~~l~~~~~L~~Ls~~~~~~~~~l~-~~~~~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 257 LSVALSGCKELRCLSGFWDAVPAYLP-AVYSVC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HHHHHHTCTTCCEEECCBTCCGGGGG-GGHHHH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HHHHHhcCCCcccccCCcccchhhHH-HHHHhh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 11 1111 112234 789999999999765433 33668999999999988 432 23333
Q ss_pred ccCCCCCCeeeeeC---------ccccCcCCcccc-CCCCCCeEEcCCCCCccccCccCC-CCCCCCEeeCC--C----C
Q 045304 206 LSKLQKLQGLSLAD---------NKLEGSIPNNIC-RLTELYELDLGSNKFSRSIPACFS-NLASLRTLSLG--S----N 268 (540)
Q Consensus 206 l~~l~~L~~L~l~~---------n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n 268 (540)
...+++|++|++.+ +.+++.....+. .+++|++|+++.|.+++.....+. .+++|+.|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 34689999999944 344432222233 478999999999998876555554 58999999999 4 5
Q ss_pred CCCCCCc------cccCCCCCcEEECCCCcccCCCcccccc-ccCcceEEcccceeeecCcccc-ccCCCCcEEeCcCcc
Q 045304 269 ELTSIPL------TFWNLKDILYLNFSSNFLTGPLPLEIEN-LKVLVGIDFSVNNFSGVIPTTI-GSLKGLQYLFVGYNR 340 (540)
Q Consensus 269 ~l~~ip~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~ 340 (540)
.++..|. .+..+++|+.|++++ .+++.....+.. +++|+.|++++|.+++.....+ ..+++|++|++++|.
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 6765432 356789999999987 666555555554 8899999999999977655555 678999999999999
Q ss_pred CcccCCc-ccCCCCCCCEEECCCCcCccccCccc-cCCCCCCeEEcccC
Q 045304 341 LQGSIPY-SIGDLISLKSLNLSNNNLSGTIPVSL-EKLSYLEDLNLSFN 387 (540)
Q Consensus 341 l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n 387 (540)
+++.... ....+++|+.|++++|+++......+ ..++.|+...+..+
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 9755443 44568999999999999864433334 45666655444433
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.8e-24 Score=201.17 Aligned_cols=206 Identities=27% Similarity=0.300 Sum_probs=183.5
Q ss_pred cccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCc
Q 045304 205 TLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDIL 284 (540)
Q Consensus 205 ~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~ 284 (540)
.+..++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|+.|++++|.++.++.. ..+++|+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 3678899999999999998 5666554 6899999999999998899999999999999999999997765 7889999
Q ss_pred EEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCc
Q 045304 285 YLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNN 364 (540)
Q Consensus 285 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 364 (540)
+|++++|.+. .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 9999999998 678888999999999999999998888899999999999999999998878888999999999999999
Q ss_pred CccccCccccCCCCCCeEEcccCcceeeCCCC-CCCCCCCcccccCCCCCCCC
Q 045304 365 LSGTIPVSLEKLSYLEDLNLSFNKLAGEIPRG-GSFGNFSAESFEGNELLCGS 416 (540)
Q Consensus 365 l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p~~-~~~~~~~~~~~~~n~~~c~~ 416 (540)
+++..+..+..+++|+.|++++|+++ .+|.. .....+....+.+||+.|+|
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 99777777889999999999999998 45543 34456778889999999986
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.6e-23 Score=194.58 Aligned_cols=202 Identities=26% Similarity=0.271 Sum_probs=133.3
Q ss_pred CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS 243 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 243 (540)
.+.++++++.++ .+|..+. +++++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 444555444444 2333322 4566666666666655445566666666666666666644444456666666666666
Q ss_pred CCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCc
Q 045304 244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP 322 (540)
Q Consensus 244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 322 (540)
|.+++..+..|..+++|++|++++|.++.++. .+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 66665555566666667777777776666543 45566777777777777766555566777777777777777776666
Q ss_pred cccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304 323 TTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT 368 (540)
Q Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (540)
..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 6677788888888888888866666677888888888888887644
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.6e-23 Score=197.14 Aligned_cols=186 Identities=28% Similarity=0.330 Sum_probs=94.7
Q ss_pred ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR 261 (540)
Q Consensus 182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 261 (540)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33444444444444444431 1344444444444444444444444444445555555555555444444444455555
Q ss_pred EeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304 262 TLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR 340 (540)
Q Consensus 262 ~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 340 (540)
+|++++|.++++|. .+..+++|++|++++|++.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC
Confidence 55555555554333 23445555555555555554444445555555555555555555555555556666666666665
Q ss_pred CcccCCcccCCCCCCCEEECCCCcCccccCccccCC
Q 045304 341 LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL 376 (540)
Q Consensus 341 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 376 (540)
+.+. +++|+.++++.|.++|.+|..+..+
T Consensus 217 ~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 217 WDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp BCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 5432 3345666666666666666655543
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.4e-23 Score=197.52 Aligned_cols=141 Identities=30% Similarity=0.317 Sum_probs=64.9
Q ss_pred ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR 261 (540)
Q Consensus 182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 261 (540)
+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 34444444444444444443333444444444444444444433333344444444444444444444443444444444
Q ss_pred EeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304 262 TLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341 (540)
Q Consensus 262 ~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 341 (540)
.|++++|.+++ ..+..+..+++|+.|++++|.+.+. +++|+.++++.|.+
T Consensus 185 ~L~L~~N~l~~-----------------------~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 185 DLRLYQNQLKS-----------------------VPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH 234 (272)
T ss_dssp EEECCSSCCSC-----------------------CCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHT
T ss_pred EEECCCCcCCc-----------------------cCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhC
Confidence 44444444444 3333344444444444444444322 33455555555555
Q ss_pred cccCCcccCCC
Q 045304 342 QGSIPYSIGDL 352 (540)
Q Consensus 342 ~~~~~~~~~~l 352 (540)
+|.+|.+++.+
T Consensus 235 ~g~ip~~~~~~ 245 (272)
T 3rfs_A 235 SGVVRNSAGSV 245 (272)
T ss_dssp GGGBBCTTSCB
T ss_pred CCcccCccccc
Confidence 55555544443
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.3e-23 Score=201.87 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=113.0
Q ss_pred CCCCeeeccCCccccccCccc--cCCCCCCeeeeeCccccCcCC----ccccCCCCCCeEEcCCCCCccccCccCCCCCC
Q 045304 186 TNLIIIYLGGNKLNGSIPITL--SKLQKLQGLSLADNKLEGSIP----NNICRLTELYELDLGSNKFSRSIPACFSNLAS 259 (540)
Q Consensus 186 ~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 259 (540)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|+.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 335555555555554444444 445555555555555544333 22234555555555555555555555555555
Q ss_pred CCEeeCCCCCCCC---CCc--cccCCCCCcEEECCCCcccCCCcc----ccccccCcceEEcccceeeecCccccccC--
Q 045304 260 LRTLSLGSNELTS---IPL--TFWNLKDILYLNFSSNFLTGPLPL----EIENLKVLVGIDFSVNNFSGVIPTTIGSL-- 328 (540)
Q Consensus 260 L~~L~l~~n~l~~---ip~--~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-- 328 (540)
|++|++++|.+.+ ++. .+..+++|++|+|++|+++. ++. .+..+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 5555555555443 221 22445556666666665541 121 23455666667777777666656555554
Q ss_pred -CCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcce
Q 045304 329 -KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA 390 (540)
Q Consensus 329 -~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~ 390 (540)
++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+.|++++|+++
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 57777777777777 5565553 6777777777777753 32 566777778888777765
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=4e-23 Score=190.61 Aligned_cols=196 Identities=15% Similarity=0.195 Sum_probs=125.0
Q ss_pred CCCeeeccCCccccccCccccCCCCCCeeeeeCcc-ccCcCCccccCCCCCCeEEcCC-CCCccccCccCCCCCCCCEee
Q 045304 187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNK-LEGSIPNNICRLTELYELDLGS-NKFSRSIPACFSNLASLRTLS 264 (540)
Q Consensus 187 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 264 (540)
+|++|++++|++++..+..|..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555556666666666666664 5544444566666666666665 666655555666666666666
Q ss_pred CCCCCCCCCCccccCCCCCc---EEECCCC-cccCCCccccccccCcc-eEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304 265 LGSNELTSIPLTFWNLKDIL---YLNFSSN-FLTGPLPLEIENLKVLV-GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN 339 (540)
Q Consensus 265 l~~n~l~~ip~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 339 (540)
+++|.++++|. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.++...+..+.. ++|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 66666666665 55555665 6677766 66655555666777777 7777777776333333443 67777777777
Q ss_pred c-CcccCCcccCCC-CCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304 340 R-LQGSIPYSIGDL-ISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387 (540)
Q Consensus 340 ~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 387 (540)
+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 4 776556667777 777788887777774 3332 5667777777665
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=4.2e-25 Score=219.24 Aligned_cols=247 Identities=18% Similarity=0.233 Sum_probs=151.6
Q ss_pred CCccccCCCCCCEEEcccCcCccccchh---hhcCCCCCCEEEccCC---cccccCCccc-------cCCCCCCEEEccC
Q 045304 26 IPTKVFNVSTLKVFEVSNNSLSGSLSSI---AGVRLPNLEVLRMRSN---NFCGTIPHFI-------FNASKLSLLELGD 92 (540)
Q Consensus 26 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~L~~n---~l~~~~~~~l-------~~l~~L~~L~L~~ 92 (540)
++..+..+++|++|+|++|.+.+..+.. .+..+++|++|+|++| .+++.+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 4445555666666666666655332222 1235566666666654 2333334333 4556666666666
Q ss_pred Ccccc----cCCccccCCCCCCEEECcCccccCCCCCccccccCCCC---------CCCCEEECcCCCCCc-cCCc--cc
Q 045304 93 NSFSG----FIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC---------KTLTYIDLSDNPLDG-ILPG--TS 156 (540)
Q Consensus 93 n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l---------~~L~~L~l~~n~l~~-~~~~--~~ 156 (540)
|.+++ .++..+..+++|++|+|++|.+...... .++..+..+ ++|++|++++|.+.. .++. ..
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-KIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 66654 3445556666666666666655432100 022222223 666677777666652 1110 12
Q ss_pred cccccccCcEEEccCCccee-----cCChhccCCCCCCeeeccCCccc----cccCccccCCCCCCeeeeeCccccCc--
Q 045304 157 VGNLSHSLEYFYMPNCNVSG-----GIPEEISNLTNLIIIYLGGNKLN----GSIPITLSKLQKLQGLSLADNKLEGS-- 225 (540)
Q Consensus 157 ~~~l~~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~n~~~~~-- 225 (540)
+..+ ++|++|++++|.+.. ..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++.
T Consensus 183 l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 183 FQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 3334 467777777776652 23336778888888888888885 56677788888888888888888755
Q ss_pred --CCcccc--CCCCCCeEEcCCCCCcc----ccCccC-CCCCCCCEeeCCCCCCCCCC
Q 045304 226 --IPNNIC--RLTELYELDLGSNKFSR----SIPACF-SNLASLRTLSLGSNELTSIP 274 (540)
Q Consensus 226 --~p~~~~--~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~ip 274 (540)
++..+. .+++|++|+|++|.+++ .+|..+ .++++|++|++++|.+++..
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 455553 38889999999998887 466666 56788999999999888744
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=3.9e-23 Score=198.47 Aligned_cols=225 Identities=16% Similarity=0.156 Sum_probs=179.2
Q ss_pred CCCEEECcCCCCCccCCc--cccccccccCcEEEccCCcceecCChhc--cCCCCCCeeeccCCccccccC----ccccC
Q 045304 137 TLTYIDLSDNPLDGILPG--TSVGNLSHSLEYFYMPNCNVSGGIPEEI--SNLTNLIIIYLGGNKLNGSIP----ITLSK 208 (540)
Q Consensus 137 ~L~~L~l~~n~l~~~~~~--~~~~~l~~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~l~~ 208 (540)
.++.+.+.++.+....-. .....+ ++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456666666655421000 011112 458888888888888888877 889999999999999987555 34457
Q ss_pred CCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccc--c--CccCCCCCCCCEeeCCCCCCCCCCcc----ccCC
Q 045304 209 LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRS--I--PACFSNLASLRTLSLGSNELTSIPLT----FWNL 280 (540)
Q Consensus 209 l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~ip~~----~~~l 280 (540)
+++|++|++++|.+.+..|..|..+++|++|++++|++.+. + +..+..+++|++|++++|.++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999988888999999999999999998652 2 23347889999999999999876652 4678
Q ss_pred CCCcEEECCCCcccCCCccccccc---cCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCE
Q 045304 281 KDILYLNFSSNFLTGPLPLEIENL---KVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKS 357 (540)
Q Consensus 281 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (540)
++|++|+|++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|+|++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999998888777776 69999999999999 6677664 7999999999999964 43 678899999
Q ss_pred EECCCCcCcc
Q 045304 358 LNLSNNNLSG 367 (540)
Q Consensus 358 L~l~~n~l~~ 367 (540)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=4e-25 Score=219.41 Aligned_cols=187 Identities=21% Similarity=0.238 Sum_probs=92.5
Q ss_pred cCCCCCCeeeccCCcccc----ccCccccCCCCCCeeeeeCccccCcCCcccc----CC---------CCCCeEEcCCCC
Q 045304 183 SNLTNLIIIYLGGNKLNG----SIPITLSKLQKLQGLSLADNKLEGSIPNNIC----RL---------TELYELDLGSNK 245 (540)
Q Consensus 183 ~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~----~l---------~~L~~L~l~~n~ 245 (540)
..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+. .+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 444555555555555543 2334444455555555555544322222221 22 566666666666
Q ss_pred Cc-cccC---ccCCCCCCCCEeeCCCCCCCC------CCccccCCCCCcEEECCCCccc----CCCccccccccCcceEE
Q 045304 246 FS-RSIP---ACFSNLASLRTLSLGSNELTS------IPLTFWNLKDILYLNFSSNFLT----GPLPLEIENLKVLVGID 311 (540)
Q Consensus 246 l~-~~~~---~~~~~l~~L~~L~l~~n~l~~------ip~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~ 311 (540)
++ +.++ ..+..+++|+.|++++|.++. +|..+..+++|++|+|++|.++ +.+|..+..+++|+.|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 55 2233 234455566666666665551 2224445555555555555553 33444555555555555
Q ss_pred cccceeeec----Cccccc--cCCCCcEEeCcCccCcc----cCCccc-CCCCCCCEEECCCCcCcccc
Q 045304 312 FSVNNFSGV----IPTTIG--SLKGLQYLFVGYNRLQG----SIPYSI-GDLISLKSLNLSNNNLSGTI 369 (540)
Q Consensus 312 l~~n~l~~~----~~~~~~--~l~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 369 (540)
|++|.+++. ++..+. .+++|+.|+|++|.+++ .+|..+ ..+++|++|++++|.+++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 555555543 233332 25555555555555554 244444 33555555555555555443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.6e-24 Score=212.91 Aligned_cols=250 Identities=18% Similarity=0.201 Sum_probs=144.9
Q ss_pred EECcCCCCCccCCccccccccccCcEEEccCCcceecCC----hhccCCC-CCCeeeccCCccccccCccccCC-----C
Q 045304 141 IDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIP----EEISNLT-NLIIIYLGGNKLNGSIPITLSKL-----Q 210 (540)
Q Consensus 141 L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~ 210 (540)
++++.|.+++.+| ..+... .+|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 3 ~~ls~n~~~~~~~-~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVE-EFTSIP-HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHH-HHHTSC-TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHH-HHHhCC-CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 3445555554444 222222 445555555555554444 4555666 66666666666665555444443 6
Q ss_pred CCCeeeeeCccccCcCCccc----cCC-CCCCeEEcCCCCCccccCccC----CC-CCCCCEeeCCCCCCCC-----CCc
Q 045304 211 KLQGLSLADNKLEGSIPNNI----CRL-TELYELDLGSNKFSRSIPACF----SN-LASLRTLSLGSNELTS-----IPL 275 (540)
Q Consensus 211 ~L~~L~l~~n~~~~~~p~~~----~~l-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~-----ip~ 275 (540)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++ ++.
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 67777777776665444432 333 667777777776665444332 22 2467777777776663 233
Q ss_pred cccCCC-CCcEEECCCCcccCCCcccccc----c-cCcceEEcccceeeec----Ccccccc-CCCCcEEeCcCccCccc
Q 045304 276 TFWNLK-DILYLNFSSNFLTGPLPLEIEN----L-KVLVGIDFSVNNFSGV----IPTTIGS-LKGLQYLFVGYNRLQGS 344 (540)
Q Consensus 276 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~~----l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~l~~n~l~~~ 344 (540)
.+...+ +|++|+|++|++++..+..+.. + ++|+.|+|++|.+++. ++..+.. .++|++|+|++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 334444 6777777777776655544332 3 4777777777777652 3344444 34777777777777654
Q ss_pred CC----cccCCCCCCCEEECCCCcCccc-------cCccccCCCCCCeEEcccCcceee
Q 045304 345 IP----YSIGDLISLKSLNLSNNNLSGT-------IPVSLEKLSYLEDLNLSFNKLAGE 392 (540)
Q Consensus 345 ~~----~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~~~~L~~l~l~~n~l~~~ 392 (540)
.+ ..+..+++|+.|++++|.+.+. ++..+..+++|+.+|+++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 33 3345667777777777774322 223455667777777777776543
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.3e-22 Score=192.58 Aligned_cols=193 Identities=25% Similarity=0.363 Sum_probs=117.1
Q ss_pred CCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEe
Q 045304 184 NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTL 263 (540)
Q Consensus 184 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 263 (540)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+++. ..+..+++|+.|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 34455555555555542 23 3555556666666666555322 2 55566666666666665542 245556666666
Q ss_pred eCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcc
Q 045304 264 SLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343 (540)
Q Consensus 264 ~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 343 (540)
++++|.+++++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 666666666543 5566666666666666654333 5566667777777776664333 6666777777777777764
Q ss_pred cCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee
Q 045304 344 SIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 391 (540)
..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++
T Consensus 188 ~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 433 6667777777777777775443 6677777777777777754
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=6.2e-22 Score=183.93 Aligned_cols=177 Identities=24% Similarity=0.301 Sum_probs=89.9
Q ss_pred CCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCC
Q 045304 187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLG 266 (540)
Q Consensus 187 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 266 (540)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3455666666655 3443332 456666666666665555556666666666666666665555555555666666666
Q ss_pred CCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304 267 SNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI 345 (540)
Q Consensus 267 ~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (540)
+|.++.+|. .+..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..|..+++|+.|+|++|.+++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 655555443 3344555555555555554443333444444444444444444333334444444444444444444333
Q ss_pred CcccCCCCCCCEEECCCCcCc
Q 045304 346 PYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 346 ~~~~~~l~~L~~L~l~~n~l~ 366 (540)
+..+..+++|+.|++++|+++
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 334444444444444444443
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2e-24 Score=212.18 Aligned_cols=108 Identities=16% Similarity=0.105 Sum_probs=66.7
Q ss_pred EEeccCcccccCCCccccCCCCCCEEEcccCcCccccch----hhhcCCC-CCCEEEccCCcccccCCccccCC-----C
Q 045304 14 LLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSS----IAGVRLP-NLEVLRMRSNNFCGTIPHFIFNA-----S 83 (540)
Q Consensus 14 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l-----~ 83 (540)
++++++|++++.+|..+...++|++|++++|.+++ .+. ..+..++ +|++|+|++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 35677777777776666666667777777777763 332 3335666 67777777777766555555543 6
Q ss_pred CCCEEEccCCcccccCCccc----cCC-CCCCEEECcCccccCC
Q 045304 84 KLSLLELGDNSFSGFIPDTF----GNL-RNLNKVTLYNNYLTSS 122 (540)
Q Consensus 84 ~L~~L~L~~n~~~~~~~~~~----~~l-~~L~~L~l~~n~~~~~ 122 (540)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.++..
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 67777777777665544432 233 5666666666665543
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=6.2e-24 Score=206.85 Aligned_cols=254 Identities=15% Similarity=0.235 Sum_probs=166.2
Q ss_pred CCCEEEcccCcCccccchhhhcCC--CCCCEEEccCCcccccCCccccCCCCCCEEEccCCccccc-CCccccCCCCCCE
Q 045304 35 TLKVFEVSNNSLSGSLSSIAGVRL--PNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGF-IPDTFGNLRNLNK 111 (540)
Q Consensus 35 ~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~l~~L~~ 111 (540)
.++.++++++.+. +.. +..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4666777766554 122 2344 6677777777776655444 44567777777777776654 5566667777777
Q ss_pred EECcCccccCCCCCccccccCCCCCCCCEEECcCC-CCCcc-CCccccccccccCcEEEccCC-cceec-CChhccCCC-
Q 045304 112 VTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDN-PLDGI-LPGTSVGNLSHSLEYFYMPNC-NVSGG-IPEEISNLT- 186 (540)
Q Consensus 112 L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~l~~~L~~L~l~~~-~~~~~-~~~~l~~l~- 186 (540)
|++++|.++.. .+..+..+++|++|++++| .+++. ++ ..+..+ ++|++|++++| .+++. ++..+..++
T Consensus 123 L~L~~~~l~~~-----~~~~l~~~~~L~~L~L~~~~~l~~~~l~-~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 123 LSLEGLRLSDP-----IVNTLAKNSNLVRLNLSGCSGFSEFALQ-TLLSSC-SRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp EECTTCBCCHH-----HHHHHTTCTTCSEEECTTCBSCCHHHHH-HHHHHC-TTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred EeCcCcccCHH-----HHHHHhcCCCCCEEECCCCCCCCHHHHH-HHHhcC-CCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 77777765543 4455666777777777777 45532 22 334445 67777777777 66653 566677788
Q ss_pred CCCeeeccCC--ccc-cccCccccCCCCCCeeeeeCcc-ccCcCCccccCCCCCCeEEcCCCC-CccccCccCCCCCCCC
Q 045304 187 NLIIIYLGGN--KLN-GSIPITLSKLQKLQGLSLADNK-LEGSIPNNICRLTELYELDLGSNK-FSRSIPACFSNLASLR 261 (540)
Q Consensus 187 ~L~~L~l~~n--~l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 261 (540)
+|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 275 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK 275 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence 8888888888 444 4456666778888888888887 666667778888888888888884 3322223577788888
Q ss_pred EeeCCCCCCCCCCccccCC-CCCcEEECCCCcccCCCcccccc
Q 045304 262 TLSLGSNELTSIPLTFWNL-KDILYLNFSSNFLTGPLPLEIEN 303 (540)
Q Consensus 262 ~L~l~~n~l~~ip~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~ 303 (540)
.|++++| ++.- .+..+ ..+..|++++|++++..|..++.
T Consensus 276 ~L~l~~~-i~~~--~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 276 TLQVFGI-VPDG--TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EEECTTS-SCTT--CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred EEeccCc-cCHH--HHHHHHhhCcceEEecccCccccCCcccc
Confidence 8888888 3321 12222 23556668888888888876654
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=9e-24 Score=205.72 Aligned_cols=229 Identities=21% Similarity=0.223 Sum_probs=156.5
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccc-cCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEE
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGS-IPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELD 240 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~ 240 (540)
..++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4566666666666555444 44567777777777776654 566666777777777777777666666777777777777
Q ss_pred cCCC-CCccc-cCccCCCCCCCCEeeCCCC-CCCC--CCccccCCC-CCcEEECCCC--ccc-CCCccccccccCcceEE
Q 045304 241 LGSN-KFSRS-IPACFSNLASLRTLSLGSN-ELTS--IPLTFWNLK-DILYLNFSSN--FLT-GPLPLEIENLKVLVGID 311 (540)
Q Consensus 241 l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~--ip~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~ 311 (540)
+++| .+++. ++..+..+++|+.|++++| .+++ ++..+..++ +|++|++++| .++ +.++..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 7777 56542 5555667777788888777 7765 566666777 7888888887 344 34566667778888888
Q ss_pred cccce-eeecCccccccCCCCcEEeCcCcc-CcccCCcccCCCCCCCEEECCCCcCccccCccccCC-CCCCeEEcccCc
Q 045304 312 FSVNN-FSGVIPTTIGSLKGLQYLFVGYNR-LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKL-SYLEDLNLSFNK 388 (540)
Q Consensus 312 l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~L~~l~l~~n~ 388 (540)
+++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ++.. .+..+ ..+..|++++|+
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEeccc
Confidence 88887 666667777888888888888884 33222235677888888888888 3321 23333 236677788888
Q ss_pred ceeeCCC
Q 045304 389 LAGEIPR 395 (540)
Q Consensus 389 l~~~~p~ 395 (540)
+++..|.
T Consensus 305 l~~~~~~ 311 (336)
T 2ast_B 305 FTTIARP 311 (336)
T ss_dssp SCCTTCS
T ss_pred CccccCC
Confidence 8876664
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=4e-22 Score=183.89 Aligned_cols=196 Identities=21% Similarity=0.220 Sum_probs=135.6
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCc-cccccCccccCCCCCCeeeeeC-ccccCcCCccccCCCCCCeE
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNK-LNGSIPITLSKLQKLQGLSLAD-NKLEGSIPNNICRLTELYEL 239 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L 239 (540)
.++++|++++|++++..+..+..+++|++|++++|+ ++...+..|..+++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 456666666666665555566677777777777775 6655555667777777777776 67765555667777777777
Q ss_pred EcCCCCCccccCccCCCCCCCC---EeeCCCC-CCCCCCc-cccCCCCCc-EEECCCCcccCCCccccccccCcceEEcc
Q 045304 240 DLGSNKFSRSIPACFSNLASLR---TLSLGSN-ELTSIPL-TFWNLKDIL-YLNFSSNFLTGPLPLEIENLKVLVGIDFS 313 (540)
Q Consensus 240 ~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~ip~-~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 313 (540)
++++|.+++ +|. |..+++|+ .|++++| .++.+|. .+..+++|+ +|++++|.+. .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 777777765 454 66677776 7777777 7777554 466677777 7777777776 333332233678888888
Q ss_pred cce-eeecCccccccC-CCCcEEeCcCccCcccCCcccCCCCCCCEEECCCC
Q 045304 314 VNN-FSGVIPTTIGSL-KGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNN 363 (540)
Q Consensus 314 ~n~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 363 (540)
+|. +++..+..|..+ ++|+.|++++|.+++ +|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 884 776667778888 888888888888874 4433 5677888888765
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.7e-21 Score=180.89 Aligned_cols=179 Identities=23% Similarity=0.279 Sum_probs=132.8
Q ss_pred CCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECC
Q 045304 211 KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFS 289 (540)
Q Consensus 211 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~ 289 (540)
..+.++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++++. .+..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4566777777776 4555544 577778888887777777777777788888888887777544 46777778888888
Q ss_pred CCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcccc
Q 045304 290 SNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTI 369 (540)
Q Consensus 290 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 369 (540)
+|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|+.|++++|++++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88777666667777778888888888777666666777777888888888777666666777777888888888777666
Q ss_pred CccccCCCCCCeEEcccCcceee
Q 045304 370 PVSLEKLSYLEDLNLSFNKLAGE 392 (540)
Q Consensus 370 ~~~~~~~~~L~~l~l~~n~l~~~ 392 (540)
+..+..+++|+.|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66777777788888888877654
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.6e-21 Score=186.77 Aligned_cols=191 Identities=25% Similarity=0.386 Sum_probs=142.4
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +.+..+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l 114 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEEC
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEEC
Confidence 466666666666653 33 46677778888888877775433 77777888888888877743 35777888888888
Q ss_pred CCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecC
Q 045304 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVI 321 (540)
Q Consensus 242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 321 (540)
++|.+++. +. +..+++|+.|++++|.+++++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++..
T Consensus 115 ~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 115 TSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp TTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh
Confidence 88887753 32 7778888888888888887765 6777888888888888875433 777888888888888887544
Q ss_pred ccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 322 PTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++
T Consensus 190 ~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 P--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3 7788888888888888886553 7888888999998888874
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=3.1e-21 Score=188.45 Aligned_cols=250 Identities=19% Similarity=0.193 Sum_probs=152.6
Q ss_pred CcccCCCCCCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCC-ccccC
Q 045304 3 PHEIGNLRNLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIP-HFIFN 81 (540)
Q Consensus 3 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~ 81 (540)
|+.++.|.. ++++.++++++ .+|..+ .+++++|+|++|.++ .+|...|.++++|++|+|++|.+.+.+| ..|.+
T Consensus 3 p~~~C~C~~-~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~ 77 (350)
T 4ay9_X 3 HHRICHCSN-RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN 77 (350)
T ss_dssp CCSSSEEET-TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS
T ss_pred CCCccEeeC-CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc
Confidence 444555643 67888888888 667655 368899999999988 7888777889999999999998866555 45778
Q ss_pred CCCCCE-EEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccc
Q 045304 82 ASKLSL-LELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNL 160 (540)
Q Consensus 82 l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l 160 (540)
++++++ +.+..|+++...|..|..+++|++|++++|.+...+. ..+....++..+++.++.-...++...+..+
T Consensus 78 L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 78 LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-----VHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp CTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-----CTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred chhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc-----hhhcccchhhhhhhccccccccccccchhhc
Confidence 887765 5566788887778888888888888888888876532 2234445566666655322222221222222
Q ss_pred cccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeC-ccccCcCCccccCCCCCCeE
Q 045304 161 SHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLAD-NKLEGSIPNNICRLTELYEL 239 (540)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~L 239 (540)
.. .++.|++++|+++...+. .....+|+++++.+ |.+....+..|..+++|++|
T Consensus 153 ~~------------------------~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 153 SF------------------------ESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp BS------------------------SCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred ch------------------------hhhhhccccccccCCChh-hccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 22 345555555555532222 22334556666653 33332222345666666666
Q ss_pred EcCCCCCccccCccCCCCCCCCEeeCCC-CCCCCCCccccCCCCCcEEECCCC
Q 045304 240 DLGSNKFSRSIPACFSNLASLRTLSLGS-NELTSIPLTFWNLKDILYLNFSSN 291 (540)
Q Consensus 240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~ip~~~~~l~~L~~L~L~~n 291 (540)
++++|+++...+..| .+|+.|.+.+ +.++.+|. +..+++|+.+++.++
T Consensus 208 dLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 208 DISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp ECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred hcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 666666654333333 3344444333 34455553 556667777776654
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=1.4e-20 Score=193.16 Aligned_cols=184 Identities=23% Similarity=0.308 Sum_probs=94.0
Q ss_pred CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeee
Q 045304 137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS 216 (540)
Q Consensus 137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 216 (540)
+|+.|++++|.+.+ +| ..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|+.|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp-~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LP-DNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CC-SCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cC-HhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 56677777766665 33 2221 45666666666665 444 334566666666666654 444 333 566666
Q ss_pred eeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCC
Q 045304 217 LADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296 (540)
Q Consensus 217 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~ 296 (540)
+++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.++++|. +. ++|+.|+|++|.++ .
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-c
Confidence 66666554 443 44556666666665554 333 34555566666555555555 33 55555555555555 3
Q ss_pred CccccccccCc-------ceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCccc
Q 045304 297 LPLEIENLKVL-------VGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSI 349 (540)
Q Consensus 297 ~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 349 (540)
+|. +.. +| +.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 333 322 33 44444444444 234434444444444444444444444333
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=3.1e-20 Score=167.22 Aligned_cols=158 Identities=26% Similarity=0.292 Sum_probs=70.8
Q ss_pred CCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCC
Q 045304 187 NLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLG 266 (540)
Q Consensus 187 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 266 (540)
+|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333334444445555555444444433344444445555554
Q ss_pred CCCCCCCCcc-ccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccC
Q 045304 267 SNELTSIPLT-FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSI 345 (540)
Q Consensus 267 ~n~l~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (540)
+|.+++++.. +..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ .+++|++|+++.|.++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 4444443332 3344444444444444443333334444444444444443332 2234444444444444444
Q ss_pred CcccCC
Q 045304 346 PYSIGD 351 (540)
Q Consensus 346 ~~~~~~ 351 (540)
|..++.
T Consensus 182 p~~~~~ 187 (208)
T 2o6s_A 182 RNSAGS 187 (208)
T ss_dssp BCTTSS
T ss_pred eccCcc
Confidence 444433
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=3.7e-20 Score=190.02 Aligned_cols=188 Identities=26% Similarity=0.364 Sum_probs=153.4
Q ss_pred cCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC
Q 045304 163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242 (540)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 242 (540)
+++.|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 79999999999886 777653 78999999999998 566 457899999999999986 676 655 89999999
Q ss_pred CCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCc
Q 045304 243 SNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP 322 (540)
Q Consensus 243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 322 (540)
+|.+++ +|. .+++|+.|++++|.++++|. .+++|++|+|++|.+++ +|. +. ++|+.|+|++|.++ .+|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence 999987 565 57899999999999998887 56889999999999886 665 55 88999999999988 566
Q ss_pred cccccCCCC-------cEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCC
Q 045304 323 TTIGSLKGL-------QYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLS 377 (540)
Q Consensus 323 ~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 377 (540)
. +.. +| +.|+|++|.++ .+|..+..+++|+.|++++|.+++.+|..+..++
T Consensus 197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 5 544 66 89999999998 5787777889999999999999988887776543
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=7.4e-20 Score=164.77 Aligned_cols=162 Identities=27% Similarity=0.342 Sum_probs=134.0
Q ss_pred ccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEc
Q 045304 162 HSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDL 241 (540)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l 241 (540)
+++++|++++|.+.+..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 56777777777777665666788888999999999888766667788899999999999988766667888999999999
Q ss_pred CCCCCccccCccCCCCCCCCEeeCCCCCCCCCCcc-ccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeec
Q 045304 242 GSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLT-FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGV 320 (540)
Q Consensus 242 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 320 (540)
++|.+++..+..|..+++|+.|++++|.++++|.. +..+++|++|++++|.+.+ .++.|+.|+++.|.++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 99999877777788899999999999999987664 6788999999999997764 345788899999999999
Q ss_pred CccccccCCC
Q 045304 321 IPTTIGSLKG 330 (540)
Q Consensus 321 ~~~~~~~l~~ 330 (540)
+|..++.++.
T Consensus 181 ip~~~~~l~~ 190 (208)
T 2o6s_A 181 VRNSAGSVAP 190 (208)
T ss_dssp BBCTTSSBCT
T ss_pred eeccCccccC
Confidence 9988887654
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.4e-19 Score=176.59 Aligned_cols=200 Identities=19% Similarity=0.133 Sum_probs=90.6
Q ss_pred CEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCc
Q 045304 86 SLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLE 165 (540)
Q Consensus 86 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~ 165 (540)
++++.++++++ .+|..+ .+++++|+|++|+++..+. ..|.++++|++|+|++|.+.+.++...+..+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~-----~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L----- 78 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQK-----GAFSGFGDLEKIEISQNDVLEVIEADVFSNL----- 78 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECT-----TSSTTCTTCCEEEEECCTTCCEECTTSBCSC-----
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCH-----HHHcCCCCCCEEECcCCCCCCccChhHhhcc-----
Confidence 45566666665 345444 2466677777776665321 2456666666666666666554442333333
Q ss_pred EEEccCCcceecCChhccCCCCCCe-eeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC-
Q 045304 166 YFYMPNCNVSGGIPEEISNLTNLII-IYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS- 243 (540)
Q Consensus 166 ~L~l~~~~~~~~~~~~l~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~- 243 (540)
+++++ +.+..|+++...|..|..+++|++|++++|.+....+..+....++..|++.+
T Consensus 79 --------------------~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~ 138 (350)
T 4ay9_X 79 --------------------PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138 (350)
T ss_dssp --------------------TTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred --------------------hhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc
Confidence 33322 22233344433334444444444444444444433333333333344444432
Q ss_pred CCCccccCccCCCCC-CCCEeeCCCCCCCCCCccccCCCCCcEEECCC-CcccCCCccccccccCcceEEcccceee
Q 045304 244 NKFSRSIPACFSNLA-SLRTLSLGSNELTSIPLTFWNLKDILYLNFSS-NFLTGPLPLEIENLKVLVGIDFSVNNFS 318 (540)
Q Consensus 244 n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 318 (540)
+.+....+..|..+. .++.|++++|.++.+|...+...+|+.+++.+ |.+....+..|..+++|+.|++++|+++
T Consensus 139 ~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 139 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp TTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 233322233333332 34445555555554444444444444444443 2222222223444444444444444444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=4.2e-20 Score=167.50 Aligned_cols=156 Identities=24% Similarity=0.291 Sum_probs=87.6
Q ss_pred CeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccC-ccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCC
Q 045304 213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIP-ACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSN 291 (540)
Q Consensus 213 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n 291 (540)
+.+++++|.++ .+|..+. ..+++|++++|.+++..+ ..|..+++|+.|++++|.+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~------------------- 71 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD------------------- 71 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-------------------
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-------------------
Confidence 35555555555 2444332 234555555555554432 234445555555555555444
Q ss_pred cccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCc
Q 045304 292 FLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPV 371 (540)
Q Consensus 292 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 371 (540)
..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|+.|++++|++++..|.
T Consensus 72 ----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 72 ----IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp ----ECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred ----ECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 4444455555555555555555555555555666666666666666655566666666666666666666666566
Q ss_pred cccCCCCCCeEEcccCcceeeCC
Q 045304 372 SLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 372 ~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
.|..+++|+.|++++|++.+..+
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSGG
T ss_pred HhcCCCCCCEEEecCcCCcCCCc
Confidence 66666666666666666665444
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.6e-19 Score=171.28 Aligned_cols=172 Identities=23% Similarity=0.322 Sum_probs=112.8
Q ss_pred cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEE
Q 045304 207 SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL 286 (540)
Q Consensus 207 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L 286 (540)
..+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.++++|. +..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 3455566666666665532 2 25556666666666666654433 5666666666666666666543 5566666666
Q ss_pred ECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCc
Q 045304 287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 287 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 6666666643 3466667777777777777654 456777778888888887775544 777778888888888777
Q ss_pred cccCccccCCCCCCeEEcccCccee
Q 045304 367 GTIPVSLEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 367 ~~~~~~~~~~~~L~~l~l~~n~l~~ 391 (540)
+. + .+..+++|+.|++++|+++.
T Consensus 192 ~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CC-h-hhccCCCCCEEECcCCcccC
Confidence 53 3 36777888888888887764
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.2e-19 Score=164.52 Aligned_cols=153 Identities=22% Similarity=0.297 Sum_probs=83.1
Q ss_pred CeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCc
Q 045304 213 QGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNF 292 (540)
Q Consensus 213 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~ 292 (540)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|+.|++++|.++.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~-------------------- 70 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE-------------------- 70 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCE--------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCC--------------------
Confidence 34556666555 3444333 456666666666665555555555566666655555555
Q ss_pred ccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCcc
Q 045304 293 LTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVS 372 (540)
Q Consensus 293 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 372 (540)
..|..|..+++|++|+|++|.++...+..|..+++|++|+|++|.+++..|..|..+++|+.|++++|++++..+..
T Consensus 71 ---~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 71 ---LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp ---ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ---cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 33444444444444444444444333344455555555555555555555555555555555555555555555555
Q ss_pred ccCCCCCCeEEcccCccee
Q 045304 373 LEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 373 ~~~~~~L~~l~l~~n~l~~ 391 (540)
+..+++|+.+++++|++.+
T Consensus 148 ~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTCTTCCEEECCSSCEEC
T ss_pred HhCCCCCCEEEeCCCCcCC
Confidence 5555566666666665554
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=3.2e-19 Score=169.17 Aligned_cols=171 Identities=23% Similarity=0.342 Sum_probs=115.6
Q ss_pred CCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEe
Q 045304 184 NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTL 263 (540)
Q Consensus 184 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 263 (540)
.+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 455566666666665532 2 25566666666666666664332 6666677777777766654 22 36667777777
Q ss_pred eCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcc
Q 045304 264 SLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQG 343 (540)
Q Consensus 264 ~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 343 (540)
++++|.+++++ .+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 118 ~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 118 SLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 77777776653 456667777777777777654 456777778888888887776544 7778888888888888875
Q ss_pred cCCcccCCCCCCCEEECCCCcCcc
Q 045304 344 SIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
++ .+..+++|+.|++++|+++.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 33 37788888888888888774
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=4.3e-19 Score=184.24 Aligned_cols=190 Identities=22% Similarity=0.299 Sum_probs=143.7
Q ss_pred CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS 243 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 243 (540)
+..+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..| +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 4444555555554333 4567888888888888874 34 47788888888888888886443 78888888888888
Q ss_pred CCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCcc
Q 045304 244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPT 323 (540)
Q Consensus 244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 323 (540)
|.+.+ ++ .+..+++|+.|+|++|.+++++ .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+++..|
T Consensus 97 N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCC-CT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCC-Ch-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 88875 33 5788888888888888888864 467788888888888888765 567788888888888888886655
Q ss_pred ccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304 324 TIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT 368 (540)
Q Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (540)
+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77788888888888888754 3577888888888888887754
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=7.5e-19 Score=182.41 Aligned_cols=193 Identities=24% Similarity=0.354 Sum_probs=161.1
Q ss_pred CCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeee
Q 045304 137 TLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLS 216 (540)
Q Consensus 137 ~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 216 (540)
.+..+.+..+.+....+ ...+ .+|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+
T Consensus 22 ~l~~l~l~~~~i~~~~~---~~~L-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT---QNEL-NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHTTCSCTTSEEC---HHHH-TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHhccCCCcccccc---hhcC-CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 34455666666665533 3445 789999999999874 34 58999999999999999987655 88999999999
Q ss_pred eeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCC
Q 045304 217 LADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGP 296 (540)
Q Consensus 217 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~ 296 (540)
|++|.+.+ +| .+..+++|++|+|++|.+.+. +.+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|.+.+.
T Consensus 94 Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 94 LDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCC
T ss_pred CcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCc
Confidence 99999985 33 688999999999999999863 4588899999999999999998 5788899999999999999977
Q ss_pred CccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCC
Q 045304 297 LPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIP 346 (540)
Q Consensus 297 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (540)
.| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+...
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcc
Confidence 66 88999999999999999864 468889999999999999986533
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=6.4e-19 Score=172.68 Aligned_cols=177 Identities=26% Similarity=0.249 Sum_probs=90.1
Q ss_pred eeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcccc-CCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC
Q 045304 190 IIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC-RLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268 (540)
Q Consensus 190 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 268 (540)
.++++++.++ .+|..+. +.++.|+|++|.+++..+..+. .+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4555555554 2333222 2345555555555544444444 4555555555555555444444555555555555555
Q ss_pred CCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcc
Q 045304 269 ELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYS 348 (540)
Q Consensus 269 ~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (540)
.++. ..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+..
T Consensus 99 ~l~~-----------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 155 (361)
T 2xot_A 99 HLHT-----------------------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155 (361)
T ss_dssp CCCE-----------------------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred cCCc-----------------------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence 4444 44444455555555555555555555555555555666666666555433333
Q ss_pred c---CCCCCCCEEECCCCcCccccCccccCCCC--CCeEEcccCcceee
Q 045304 349 I---GDLISLKSLNLSNNNLSGTIPVSLEKLSY--LEDLNLSFNKLAGE 392 (540)
Q Consensus 349 ~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~--L~~l~l~~n~l~~~ 392 (540)
+ ..+++|+.|+|++|++++..+..+..++. ++.|++++|++.+.
T Consensus 156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 3 34566666666666666444444555554 35566666666543
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=156.74 Aligned_cols=152 Identities=23% Similarity=0.263 Sum_probs=107.7
Q ss_pred CeeeccCCccccccCccccCCCCCCeeeeeCccccCcCC-ccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCC
Q 045304 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIP-NNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGS 267 (540)
Q Consensus 189 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 267 (540)
+.+++++|.++ .+|..+. +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999998 4666553 467899999999997755 4588999999999999999988888899999999999888
Q ss_pred CCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCC
Q 045304 268 NELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIP 346 (540)
Q Consensus 268 n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 346 (540)
|.+++++. .+..+++|++|+|++|.+.+..|..+. .+++|++|+|++|.+++..|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------~l~~L~~L~L~~N~l~~~~~ 146 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI------------------------GLSSVRLLSLYDNQITTVAP 146 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST------------------------TCTTCSEEECTTSCCCCBCT
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcC------------------------CCccCCEEECCCCcCCEECH
Confidence 88887654 355566666666666655554444444 44455555555555554445
Q ss_pred cccCCCCCCCEEECCCCcCcc
Q 045304 347 YSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 347 ~~~~~l~~L~~L~l~~n~l~~ 367 (540)
..+..+++|+.|++++|.+.+
T Consensus 147 ~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 147 GAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTTTTCTTCCEEECCSCCEEC
T ss_pred HHhcCCCCCCEEEecCcCCcC
Confidence 555555555555555555543
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.5e-18 Score=155.81 Aligned_cols=150 Identities=23% Similarity=0.346 Sum_probs=111.9
Q ss_pred CeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC
Q 045304 189 IIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268 (540)
Q Consensus 189 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 268 (540)
+.++++++.++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57888999888 5666554 68999999999999877778999999999999999999988999999999999999999
Q ss_pred CCCCCCcc-ccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304 269 ELTSIPLT-FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341 (540)
Q Consensus 269 ~l~~ip~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 341 (540)
.++.+|.. +..+++|++|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..|..+++|+.|++++|.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 99987764 45677777777777766665555555555555555555555544444444444444444444444
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=3.8e-18 Score=167.17 Aligned_cols=175 Identities=24% Similarity=0.260 Sum_probs=116.3
Q ss_pred CEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhcc-CCCCCCeeeccCCccccccCccccCCCCCCeeee
Q 045304 139 TYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEIS-NLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSL 217 (540)
Q Consensus 139 ~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 217 (540)
+.++++++.+... | .. ++..++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|++|+|
T Consensus 21 ~~l~c~~~~l~~i-P-~~---~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNV-P-QS---LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSC-C-SS---CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCcc-C-cc---CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3455555555442 2 11 124566666666666665555565 6777777777777777666667777777777777
Q ss_pred eCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccc----cCCCCCcEEECCCCcc
Q 045304 218 ADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTF----WNLKDILYLNFSSNFL 293 (540)
Q Consensus 218 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~----~~l~~L~~L~L~~n~l 293 (540)
++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|.++.+|... ..+++|+.|+|++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 777777666666777777788888877777777777777777888888777777776654 3566777777777777
Q ss_pred cCCCccccccccC--cceEEcccceee
Q 045304 294 TGPLPLEIENLKV--LVGIDFSVNNFS 318 (540)
Q Consensus 294 ~~~~~~~~~~l~~--L~~L~l~~n~l~ 318 (540)
.+..+..+..++. ++.|+|++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 6555455555554 355666666655
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=7.4e-18 Score=153.79 Aligned_cols=152 Identities=26% Similarity=0.282 Sum_probs=76.4
Q ss_pred CcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCC
Q 045304 164 LEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGS 243 (540)
Q Consensus 164 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~ 243 (540)
.+.++.+++.+. .+|..+. ++|++|++++|.+++..|..|..+++|++|++++|.+....+..|..+++|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 344444444443 3333222 4555555555555555555555555555555555555443334445555555555555
Q ss_pred CCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee
Q 045304 244 NKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS 318 (540)
Q Consensus 244 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 318 (540)
|.+++..+..|..+++|+.|++++|.++.+|..+..+++|++|+|++|++.+..+..+..+++|+.|++++|.+.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555544444455555555555555555555555555555555555555544433333444444444444444443
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=6.1e-18 Score=154.33 Aligned_cols=153 Identities=25% Similarity=0.306 Sum_probs=101.3
Q ss_pred CCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECC
Q 045304 211 KLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFS 289 (540)
Q Consensus 211 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~ 289 (540)
..+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|..+++|+.|++++|.++.+|. .+..+++|++|+|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3556777777776 5665443 778888888888887777778888888888888888877664 35667777777777
Q ss_pred CCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 290 SNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 290 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
+|++.+..+..+..+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 77776555555566666666666666665 455555556666666666666654444455555556666666555553
No 113
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=1.3e-18 Score=154.23 Aligned_cols=129 Identities=26% Similarity=0.292 Sum_probs=65.7
Q ss_pred CeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCcc--ccCCCCCcEEECCCCcccCCCccccccccCcceEEccc
Q 045304 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLT--FWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSV 314 (540)
Q Consensus 237 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 314 (540)
+.+++++|.++ .+|..+. .+++.|++++|.++.++.. +..+++|++|+|++|.+++..|..+..+++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 45555555553 3444332 2555555555555554432 44555555555555555554455555555555555555
Q ss_pred ceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccc
Q 045304 315 NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGT 368 (540)
Q Consensus 315 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 368 (540)
|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|.+++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 555544444455555555555555555544454555555555555555554433
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=2.5e-18 Score=153.17 Aligned_cols=153 Identities=20% Similarity=0.263 Sum_probs=81.4
Q ss_pred cCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEE
Q 045304 207 SKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYL 286 (540)
Q Consensus 207 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L 286 (540)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l---------------- 100 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDV---------------- 100 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTC----------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCcc----------------
Confidence 34555666666666655 334 3555556666666555443 122344455555555555544
Q ss_pred ECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc-CcccCCcccCCCCCCCEEECCCCcC
Q 045304 287 NFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR-LQGSIPYSIGDLISLKSLNLSNNNL 365 (540)
Q Consensus 287 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 365 (540)
.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|++
T Consensus 101 -------~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 101 -------TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp -------BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred -------CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 44444445555555555555555555455555555566666666665 33 333 455566666666666666
Q ss_pred ccccCccccCCCCCCeEEcccCcce
Q 045304 366 SGTIPVSLEKLSYLEDLNLSFNKLA 390 (540)
Q Consensus 366 ~~~~~~~~~~~~~L~~l~l~~n~l~ 390 (540)
++ ++ .+..+++|+.|++++|++.
T Consensus 172 ~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CC-CT-TGGGCSSCCEEEECBC---
T ss_pred cC-hH-HhccCCCCCEEEeeCcccC
Confidence 54 22 4556666666666666653
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.75 E-value=2.6e-21 Score=199.78 Aligned_cols=203 Identities=19% Similarity=0.207 Sum_probs=126.8
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCcc-------------ccCCCCCccccccCCCCCCCCEEE-CcC
Q 045304 80 FNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNY-------------LTSSTSDLNFLSSLSNCKTLTYID-LSD 145 (540)
Q Consensus 80 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~~~~~~l~~l~~L~~L~-l~~ 145 (540)
..+++|+.|+|++|.+. .+|..++++++|++|++++|. ..+. .+..+..+++|+.|+ ++.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-----~~~~l~~l~~L~~L~~l~~ 419 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-----EKETLQYFSTLKAVDPMRA 419 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-----HHHHHHHHHHHHHHCGGGH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-----CHHHHHHHHhcccCcchhh
Confidence 34556666666666665 456666666666666665443 1111 333444455555555 333
Q ss_pred CCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCc
Q 045304 146 NPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGS 225 (540)
Q Consensus 146 n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 225 (540)
|.+ ..|..+.+.+|.+... |. ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .
T Consensus 420 n~~-------------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~ 477 (567)
T 1dce_A 420 AYL-------------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A 477 (567)
T ss_dssp HHH-------------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred ccc-------------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence 321 1233333333433321 11 247777777777775 554 777778888888888777 6
Q ss_pred CCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCC--CccccCCCCCcEEECCCCcccCCCccc---
Q 045304 226 IPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSI--PLTFWNLKDILYLNFSSNFLTGPLPLE--- 300 (540)
Q Consensus 226 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i--p~~~~~l~~L~~L~L~~n~l~~~~~~~--- 300 (540)
+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|++++|.++++ |..+..+++|+.|+|++|.+++..|..
T Consensus 478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l 555 (567)
T 1dce_A 478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555 (567)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHH
T ss_pred cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHH
Confidence 77777788888888888887775 45 677788888888888888775 677777888888888888887665422
Q ss_pred cccccCcceEEc
Q 045304 301 IENLKVLVGIDF 312 (540)
Q Consensus 301 ~~~l~~L~~L~l 312 (540)
+..+++|+.|++
T Consensus 556 ~~~lp~L~~L~l 567 (567)
T 1dce_A 556 AEMLPSVSSILT 567 (567)
T ss_dssp HHHCTTCSEEEC
T ss_pred HHHCcccCccCC
Confidence 334677777754
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.7e-18 Score=161.47 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=87.6
Q ss_pred CCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304 185 LTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS 264 (540)
Q Consensus 185 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 264 (540)
+.+++.++++++.++... .+..+++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344555566666655322 35566666666666666652 33 45666666666666666664433 66666666666
Q ss_pred CCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCccc
Q 045304 265 LGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGS 344 (540)
Q Consensus 265 l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 344 (540)
+++|.++++|.... ++|++|++++|++.+. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.+++.
T Consensus 92 L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CCSSCCSCCTTCCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCCccCCcCcccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 66666666554322 5555555555555532 1244444455555555444432 1 344444444444444444433
Q ss_pred CCcccCCCCCCCEEECCCCcCc
Q 045304 345 IPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
..+..+++|+.|++++|.++
T Consensus 166 --~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCCCCCEEEEEEEEEE
T ss_pred --HHhccCCCCCEEeCCCCccc
Confidence 23344444444444444443
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.2e-17 Score=148.74 Aligned_cols=127 Identities=22% Similarity=0.273 Sum_probs=58.0
Q ss_pred cCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcC
Q 045304 163 SLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLG 242 (540)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~ 242 (540)
+|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 4444444444443 223 3444455555555555333 11234444555555555555544444444455555555555
Q ss_pred CCCCccccCccCCCCCCCCEeeCCCCC-CCCCCccccCCCCCcEEECCCCccc
Q 045304 243 SNKFSRSIPACFSNLASLRTLSLGSNE-LTSIPLTFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 243 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~ip~~~~~l~~L~~L~L~~n~l~ 294 (540)
+|.+++..+..+..+++|+.|++++|. ++.+| .+..+++|++|++++|.+.
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 555544444444444455555555444 44443 3344444444444444443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=3.4e-20 Score=191.35 Aligned_cols=122 Identities=27% Similarity=0.287 Sum_probs=85.5
Q ss_pred CCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcC
Q 045304 259 SLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGY 338 (540)
Q Consensus 259 ~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 338 (540)
.|+.|++++|.++++|. +..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 46777777777777775 677777777777777777 666677777777777777777775 45 677777777777777
Q ss_pred ccCcccC-CcccCCCCCCCEEECCCCcCccccCcc---ccCCCCCCeEEc
Q 045304 339 NRLQGSI-PYSIGDLISLKSLNLSNNNLSGTIPVS---LEKLSYLEDLNL 384 (540)
Q Consensus 339 n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~~~L~~l~l 384 (540)
|.+++.. |..+..+++|+.|++++|++++..|.. +..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 7777665 777777777777777777777554422 233667776653
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=9.1e-19 Score=186.46 Aligned_cols=181 Identities=23% Similarity=0.225 Sum_probs=118.3
Q ss_pred cCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCC
Q 045304 177 GIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSN 256 (540)
Q Consensus 177 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 256 (540)
..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 44677888889999999999888 67766778899999999999988 78888889999999999999988 67888889
Q ss_pred CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccC-cceEEcccceeeecCccccccCCCCcEEe
Q 045304 257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKV-LVGIDFSVNNFSGVIPTTIGSLKGLQYLF 335 (540)
Q Consensus 257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 335 (540)
+++|++|+|++|.++.+|..+..+++|++|+|++|.+.+.+|..+..+.. +..++|++|.+++.+|.. |+.|+
T Consensus 292 l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~ 365 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIE 365 (727)
T ss_dssp GTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------
T ss_pred CCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeE
Confidence 99999999999999889888888999999999999998888877765432 234778888888877753 45556
Q ss_pred CcCc--------cCcccCCcccCCCCCCCEEECCCCcCc
Q 045304 336 VGYN--------RLQGSIPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 336 l~~n--------~l~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
++.| .+.+..+..+..+..+....+++|-+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 6665 333334444455556666677777664
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.9e-18 Score=158.34 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=147.9
Q ss_pred CCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEE
Q 045304 208 KLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLN 287 (540)
Q Consensus 208 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~ 287 (540)
.+..+..++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|+.|++++|.+++++. +..+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4566778889999888543 57889999999999999974 45 68899999999999999999887 88999999999
Q ss_pred CCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 288 FSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 288 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
+++|++.+. +.. .. ++|+.|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|++++
T Consensus 92 L~~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Ccc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 999999864 332 23 8999999999999864 3588999999999999999965 3 68899999999999999997
Q ss_pred ccCccccCCCCCCeEEcccCcceee
Q 045304 368 TIPVSLEKLSYLEDLNLSFNKLAGE 392 (540)
Q Consensus 368 ~~~~~~~~~~~L~~l~l~~n~l~~~ 392 (540)
. ..+..+++|+.|++++|++.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h--HHhccCCCCCEEeCCCCcccCC
Confidence 6 6788999999999999998764
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=9.7e-18 Score=162.16 Aligned_cols=285 Identities=17% Similarity=0.136 Sum_probs=146.4
Q ss_pred CCCCCEEeccCcccccCCCccccC-CCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccC------
Q 045304 9 LRNLELLVLSHNKLVGVIPTKVFN-VSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFN------ 81 (540)
Q Consensus 9 l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------ 81 (540)
+.+++.|.++++ +....-..+.. +++|+.|||++|.+.. ..... ..++.++.+.+..+.+ .+..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~-~~~~~-~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKM-YSGKA-GTYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECC-EEESS-SSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEE-ecCcc-cccccccccccccccc---CHHHhcccccccc
Confidence 567888888764 22111122333 7889999999888761 11110 1222234444444422 2233444
Q ss_pred --CCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCC---CccCCccc
Q 045304 82 --ASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPL---DGILPGTS 156 (540)
Q Consensus 82 --l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l---~~~~~~~~ 156 (540)
+++|+.|++.+ .++.+.+.+|.+|++|+.+++.+|.+..... ..|.++.++..+.+..+.. ...+....
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~-----~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~ 171 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLP-----EALADSVTAIFIPLGSSDAYRFKNRWEHFA 171 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECT-----TSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccch-----hhhcCCCceEEecCcchhhhhccccccccc
Confidence 77777777766 6665556667777777777777776655422 3455565565555544211 00011111
Q ss_pred cccccccCc-EEEccCCcceecCChhc----cCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCcccc
Q 045304 157 VGNLSHSLE-YFYMPNCNVSGGIPEEI----SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNIC 231 (540)
Q Consensus 157 ~~~l~~~L~-~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 231 (540)
+..+ ..|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++++|.++...+..|.
T Consensus 172 f~~~-~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~ 247 (329)
T 3sb4_A 172 FIEG-EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA 247 (329)
T ss_dssp EEES-CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred cccc-cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence 2222 2333 22222111 111111 1223444454444321111111111356666666666666644445666
Q ss_pred CCCCCCeEEcCCCCCccccCccCCCCCCCC-EeeCCCCCCCCCC-ccccCCCCCcEEECCCCcccCCCccccccccCcce
Q 045304 232 RLTELYELDLGSNKFSRSIPACFSNLASLR-TLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVG 309 (540)
Q Consensus 232 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 309 (540)
.+++|+++++.+| +....+.+|..+++|+ .+++.+ .++.|+ .+|.++++|+.+++++|.+....+..|.++++|+.
T Consensus 248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 6666666666665 5555556666666666 666665 555554 35666666666666666666555566666666666
Q ss_pred EE
Q 045304 310 ID 311 (540)
Q Consensus 310 L~ 311 (540)
++
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 54
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=1.5e-18 Score=184.71 Aligned_cols=193 Identities=23% Similarity=0.241 Sum_probs=129.0
Q ss_pred eccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCC
Q 045304 192 YLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELT 271 (540)
Q Consensus 192 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 271 (540)
++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34445555 56778899999999999999998 78888889999999999999998 88999999999999999999999
Q ss_pred CCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCC-CcEEeCcCccCcccCCcccC
Q 045304 272 SIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKG-LQYLFVGYNRLQGSIPYSIG 350 (540)
Q Consensus 272 ~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~ 350 (540)
.+|..+..+++|++|+|++|.+. .+|..|..+++|+.|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-- 360 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-- 360 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc--
Confidence 99999999999999999999997 77888999999999999999999999988765422 234789999999988864
Q ss_pred CCCCCCEEECCCC--------cCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 351 DLISLKSLNLSNN--------NLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 351 ~l~~L~~L~l~~n--------~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
|+.|+++.| .+.+..+..+..+..+....+++|-+.+...
T Consensus 361 ----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~ 408 (727)
T 4b8c_D 361 ----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA 408 (727)
T ss_dssp ---------------------------------------------CCCGGGC
T ss_pred ----cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence 456667766 3444444455566667777888887764433
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=3.7e-17 Score=144.75 Aligned_cols=132 Identities=26% Similarity=0.275 Sum_probs=100.7
Q ss_pred CEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCcc-ccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPL-EIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN 339 (540)
Q Consensus 261 ~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 339 (540)
+.+++++|.++.+|..+.. ++++|++++|.+.+..+. .+..+++|++|+|++|.+++..|..|..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6777788877777775543 777888888877765554 4777778888888888887777777777788888888888
Q ss_pred cCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8877777777777888888888888887777777777888888888887776655
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.68 E-value=6.7e-17 Score=143.01 Aligned_cols=130 Identities=28% Similarity=0.350 Sum_probs=92.0
Q ss_pred CEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR 340 (540)
Q Consensus 261 ~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 340 (540)
+.+++++|.++.+|..+. ++|++|++++|.+. .+|..+..+++|+.|+|++|.+++..+..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 456666666666665432 45666666666665 455666677777777777777776666677777777777777777
Q ss_pred CcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeC
Q 045304 341 LQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEI 393 (540)
Q Consensus 341 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 393 (540)
+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c 142 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC 142 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence 77777777777788888888888887665566777788888888888777644
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.8e-16 Score=137.17 Aligned_cols=131 Identities=21% Similarity=0.154 Sum_probs=57.7
Q ss_pred CCCCeEEcCCCCCc-cccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEc
Q 045304 234 TELYELDLGSNKFS-RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDF 312 (540)
Q Consensus 234 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 312 (540)
++|++|++++|.++ +.+|..+..+++|+.|++++|.++++ ..+..+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 34555555555554 34444445555555555555554444 33344444444444444444333333333444444444
Q ss_pred ccceeeecC-ccccccCCCCcEEeCcCccCcccCC---cccCCCCCCCEEECCCCcC
Q 045304 313 SVNNFSGVI-PTTIGSLKGLQYLFVGYNRLQGSIP---YSIGDLISLKSLNLSNNNL 365 (540)
Q Consensus 313 ~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l 365 (540)
++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 444443321 1333444444444444444443222 2334444444444444443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.6e-16 Score=136.21 Aligned_cols=107 Identities=24% Similarity=0.272 Sum_probs=57.5
Q ss_pred CCCCeeeccCCccc-cccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEee
Q 045304 186 TNLIIIYLGGNKLN-GSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLS 264 (540)
Q Consensus 186 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 264 (540)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 44555555555555555555555543 4455555555555555555554555444555555555
Q ss_pred CCCCCCCCCC--ccccCCCCCcEEECCCCccc
Q 045304 265 LGSNELTSIP--LTFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 265 l~~n~l~~ip--~~~~~l~~L~~L~L~~n~l~ 294 (540)
+++|.++++| ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~ 133 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc
Confidence 5555555544 34444445555555554444
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.66 E-value=2.5e-16 Score=133.34 Aligned_cols=127 Identities=20% Similarity=0.166 Sum_probs=62.4
Q ss_pred CCCCeEEcCCCCCc-cccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEc
Q 045304 234 TELYELDLGSNKFS-RSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDF 312 (540)
Q Consensus 234 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 312 (540)
++|++|++++|.++ +.+|..+..+++|+.|++++|.++++ ..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 34555555555554 44455555555555555555555544 34444455555555555555444444444555555555
Q ss_pred ccceeeec-CccccccCCCCcEEeCcCccCcccCC---cccCCCCCCCEEECC
Q 045304 313 SVNNFSGV-IPTTIGSLKGLQYLFVGYNRLQGSIP---YSIGDLISLKSLNLS 361 (540)
Q Consensus 313 ~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 361 (540)
++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 55555432 22444445555555555555543333 234444455554443
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=8.9e-16 Score=134.04 Aligned_cols=133 Identities=23% Similarity=0.239 Sum_probs=91.2
Q ss_pred CCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304 260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN 339 (540)
Q Consensus 260 L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 339 (540)
.+.+++++++++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 3456666666666654432 46666666666666555555666777777777777777655566677777777777777
Q ss_pred cCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
.+++..+..+..+++|++|++++|++++..+..+..+++|+.+++++|++.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 7776666667777777888888777776555556777778888888887776554
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=2.2e-14 Score=141.51 Aligned_cols=263 Identities=13% Similarity=0.101 Sum_probs=129.3
Q ss_pred CCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 045304 34 STLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVT 113 (540)
Q Consensus 34 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 113 (540)
..++.+.+..+ ++ .|+...|.++ +|+.+.+..+ ++..-..+|.++ +|+.+.+.. .+..+...+|.+|++|+.++
T Consensus 113 ~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred CCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 44444444322 22 3444444432 3444444433 332333333332 344444443 33333334444444455554
Q ss_pred CcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeec
Q 045304 114 LYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYL 193 (540)
Q Consensus 114 l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 193 (540)
+..|.++..+.. .|. +.+|+.+.+..+ +... +...+..+ .+|+.+.+..+ +...-..+|.. .+|+.+.+
T Consensus 187 l~~n~l~~I~~~-----aF~-~~~L~~l~lp~~-l~~I-~~~aF~~~-~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l 255 (401)
T 4fdw_A 187 LSKTKITKLPAS-----TFV-YAGIEEVLLPVT-LKEI-GSQAFLKT-SQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL 255 (401)
T ss_dssp CTTSCCSEECTT-----TTT-TCCCSEEECCTT-CCEE-CTTTTTTC-TTCCCEECCTT-CCEECTTTTTT-CCCSEEEE
T ss_pred cCCCcceEechh-----hEe-ecccCEEEeCCc-hhee-hhhHhhCC-CCCCEEecCCC-ccCcccccccc-CCccEEEe
Confidence 444444432211 121 344444444422 2221 11233333 34455544432 22222333444 45666666
Q ss_pred cCCccccccCccccCCCCCCeeeeeCcccc-----CcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCC
Q 045304 194 GGNKLNGSIPITLSKLQKLQGLSLADNKLE-----GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSN 268 (540)
Q Consensus 194 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 268 (540)
. +.++.....+|.+|++|+.+++.++.+. ..-+..|..+++|+.+++. +.+...-..+|..|++|+.+++..+
T Consensus 256 p-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 256 P-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp E-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred C-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 3 3344344556666666666666665543 2334566677777777776 3455555666777777777777543
Q ss_pred CCCCCCc-cccCCCCCcEEECCCCcccCCCcccccccc-CcceEEccccee
Q 045304 269 ELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLK-VLVGIDFSVNNF 317 (540)
Q Consensus 269 ~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 317 (540)
++.++. +|.++ +|+.+++.+|.+....+..|..++ .++.|.+..+.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 555443 55666 777777777766655555566553 566676666543
No 130
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=2e-14 Score=142.46 Aligned_cols=198 Identities=14% Similarity=0.097 Sum_probs=109.3
Q ss_pred hhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCC
Q 045304 180 EEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLAS 259 (540)
Q Consensus 180 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 259 (540)
..+..+.+|+.+.+..+ +.......|.++..|+.+.+..+... +...+....+|+.+.+... ++......|..+..
T Consensus 179 ~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~ 254 (394)
T 4fs7_A 179 GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTD 254 (394)
T ss_dssp TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSS
T ss_pred ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceeccccccccccc
Confidence 34555566666666544 33333445666666666666544322 1222333455666665432 23333445666666
Q ss_pred CCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304 260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN 339 (540)
Q Consensus 260 L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 339 (540)
++.+.+..+...--...+..+..++.+....+.+. ...+..+.+|+.+.+..+ ++.....+|.+|.+|+.+++..+
T Consensus 255 l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 255 LESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp CCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ceeEEcCCCcceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence 66666655432222334555666666655554322 234556666666666543 44444566677777777777543
Q ss_pred cCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304 340 RLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387 (540)
Q Consensus 340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 387 (540)
++..-..+|.+|.+|+.+++..+ ++..-..+|.++++|+.+++..+
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 44344566777777777777655 55444556777777777776543
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=9.7e-16 Score=148.08 Aligned_cols=245 Identities=15% Similarity=0.123 Sum_probs=143.0
Q ss_pred CCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcce--ecCChhccCCCCCCeeeccCCccccccCccccC----
Q 045304 135 CKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVS--GGIPEEISNLTNLIIIYLGGNKLNGSIPITLSK---- 208 (540)
Q Consensus 135 l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~---- 208 (540)
+.+++.|.++++--...+ ..+....++|++|+|++|++. ...+..+ +.+..+.+..+.+ .+..|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~--~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF--RHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEEECHHHH--HHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETT
T ss_pred hCceeEEEEeccccHHHH--HHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhcccccc
Confidence 456788888764211100 122231267888888888876 2222212 2234444444422 2344555
Q ss_pred ----CCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCC----CCCCC-ccccC
Q 045304 209 ----LQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNE----LTSIP-LTFWN 279 (540)
Q Consensus 209 ----l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----l~~ip-~~~~~ 279 (540)
+++|+.+++.+ .++..-+.+|..+++|+.+++..|.+....+.+|..+.++..+.+..+. ...+. ..|..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 88888888887 7775666678888888888888888877777788877777766665521 12221 12333
Q ss_pred CCCCc-EEECCCCc--------------------ccCCC----cccc-ccccCcceEEcccceeeecCccccccCCCCcE
Q 045304 280 LKDIL-YLNFSSNF--------------------LTGPL----PLEI-ENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQY 333 (540)
Q Consensus 280 l~~L~-~L~L~~n~--------------------l~~~~----~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 333 (540)
+..|+ .+.+.... +.+.+ ...+ ..+++|+.+++++|+++...+.+|..|++|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 33333 22221110 00000 0000 12567777777777777666666777777777
Q ss_pred EeCcCccCcccCCcccCCCCCCC-EEECCCCcCccccCccccCCCCCCeEEcccCcce
Q 045304 334 LFVGYNRLQGSIPYSIGDLISLK-SLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLA 390 (540)
Q Consensus 334 L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~ 390 (540)
+++.+| ++..-+.+|.++.+|+ .+++.+ .++...+.+|.++++|+.++++.|.+.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 777776 5555566677777777 777766 566555667777777777777766665
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=4.4e-16 Score=131.82 Aligned_cols=124 Identities=19% Similarity=0.192 Sum_probs=53.3
Q ss_pred CCeeeeeCcccc-CcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCC-CCccccCCCCCcEEECC
Q 045304 212 LQGLSLADNKLE-GSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTS-IPLTFWNLKDILYLNFS 289 (540)
Q Consensus 212 L~~L~l~~n~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-ip~~~~~l~~L~~L~L~ 289 (540)
|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++ +|..+..+++|++|+++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls 96 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS 96 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence 333444433333 33333333444444444444444332 333444444444444444444 33333334444444444
Q ss_pred CCcccCC-CccccccccCcceEEcccceeeecCc---cccccCCCCcEEeCc
Q 045304 290 SNFLTGP-LPLEIENLKVLVGIDFSVNNFSGVIP---TTIGSLKGLQYLFVG 337 (540)
Q Consensus 290 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 337 (540)
+|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 4444431 22344444555555555555544333 345555555555554
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=3.5e-15 Score=131.93 Aligned_cols=128 Identities=21% Similarity=0.277 Sum_probs=98.5
Q ss_pred CeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccce
Q 045304 237 YELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNN 316 (540)
Q Consensus 237 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 316 (540)
+.+++++|.++ .+|..+. ++|+.|++++|.++.+|..+..+++|++|+|++|.+++..+..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 45666666665 3444332 46777777777777777777777777888888888777777778888888888888888
Q ss_pred eeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 317 FSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 317 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
+++..+..|..+++|+.|+|++|.++...+..+..+++|+.|++++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 887777788888888899999988886666678888899999999998864
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.62 E-value=5.7e-14 Score=138.55 Aligned_cols=267 Identities=12% Similarity=0.113 Sum_probs=204.7
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCC
Q 045304 56 VRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNC 135 (540)
Q Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l 135 (540)
..+..++.+.+.++ ++..-...|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+.... ...|.+|
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~-----~~aF~~c 179 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLK-----EDIFYYC 179 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEEC-----SSTTTTC
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEeh-----HHHhhCc
Confidence 44678888888754 555556677775 7999999876 666667788884 799999986 455442 2468899
Q ss_pred CCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCee
Q 045304 136 KTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGL 215 (540)
Q Consensus 136 ~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 215 (540)
++|+.+++..|.+..... ..+. . .+|+.+.+..+ +...-..+|..+++|+.+.+..+ ++.....+|.+ .+|+.+
T Consensus 180 ~~L~~l~l~~n~l~~I~~-~aF~-~-~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPA-STFV-Y-AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp TTCCEEECTTSCCSEECT-TTTT-T-CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred ccCCeeecCCCcceEech-hhEe-e-cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 999999999988876655 4444 3 68999999744 66566778899999999999875 55455567777 789999
Q ss_pred eeeCccccCcCCccccCCCCCCeEEcCCCCCc-----cccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECC
Q 045304 216 SLADNKLEGSIPNNICRLTELYELDLGSNKFS-----RSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFS 289 (540)
Q Consensus 216 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~ 289 (540)
.+. +.+...-..+|..+++|+.+++.+|.+. ...+.+|..|++|+.+++. +.++.++. +|.++++|+.+.|.
T Consensus 254 ~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 254 KLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp EEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEEC
T ss_pred EeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEEC
Confidence 995 4555555678999999999999887664 4566789999999999998 45777665 67888999999996
Q ss_pred CCcccCCCccccccccCcceEEcccceeeecCccccccCC-CCcEEeCcCccCc
Q 045304 290 SNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLK-GLQYLFVGYNRLQ 342 (540)
Q Consensus 290 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~ 342 (540)
.+ +...-..+|.++ +|+.+++++|.+....+..|..++ .++.|++..+.+.
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 65 555556788888 999999999988766677777774 7888988877654
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.6e-13 Score=135.90 Aligned_cols=335 Identities=13% Similarity=0.094 Sum_probs=221.6
Q ss_pred cccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCCcccccCCc
Q 045304 22 LVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNSFSGFIPD 101 (540)
Q Consensus 22 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 101 (540)
++..-..+|.+|.+|+.+.+..+ ++ .|+..+|.++.+|+.+++..+ ++..-...|.++.+|+.+.+..+ +......
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 33333457778888888888644 55 677777788888888888654 55455566777888887776654 3334455
Q ss_pred cccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChh
Q 045304 102 TFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEE 181 (540)
Q Consensus 102 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~ 181 (540)
+|.++..++..........+ ...|.++++|+.+.+..+.. .++...+..+ .+|+.+.+..+ +...-...
T Consensus 135 aF~~~~~~~~~~~~~~~~i~-------~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c-~~L~~i~l~~~-~~~I~~~~ 203 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTVIG-------DEAFATCESLEYVSLPDSME--TLHNGLFSGC-GKLKSIKLPRN-LKIIRDYC 203 (394)
T ss_dssp TTTTCCCSEEECCTTCCEEC-------TTTTTTCTTCCEEECCTTCC--EECTTTTTTC-TTCCBCCCCTT-CCEECTTT
T ss_pred eeecccccccccCccccccc-------hhhhcccCCCcEEecCCccc--eeccccccCC-CCceEEEcCCC-ceEeCchh
Confidence 66666544433332222111 23578888899988876532 2332445555 67888887655 44344566
Q ss_pred ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR 261 (540)
Q Consensus 182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 261 (540)
+..+..|+.+.+..+... +.........|+.+.+... +...-...|..+..|+.+.+..+.. ......|..+..++
T Consensus 204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~ 279 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLK 279 (394)
T ss_dssp TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCC
T ss_pred hccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccc
Confidence 778888888887766433 2333445568888888643 2323345677888888888876643 35566788888888
Q ss_pred EeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304 262 TLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341 (540)
Q Consensus 262 ~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 341 (540)
.+.+..+.+.. ..+..+.+|+.+.+..+ +...-..+|.++.+|+.+++..+ ++.....+|.+|.+|+.+++..+ +
T Consensus 280 ~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l 354 (394)
T 4fs7_A 280 KVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L 354 (394)
T ss_dssp EEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C
T ss_pred eeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c
Confidence 88776554321 25667888888888765 44344567888889999888754 66556778888899999998876 6
Q ss_pred cccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeE
Q 045304 342 QGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDL 382 (540)
Q Consensus 342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l 382 (540)
+..-..+|.+|.+|+.+++..+ +. .+..+|.++++|+.+
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred cEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 6556678888999999988754 32 334567777776654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2e-14 Score=125.42 Aligned_cols=133 Identities=23% Similarity=0.246 Sum_probs=104.2
Q ss_pred CCCEEeccCcccccCCCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEc
Q 045304 11 NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLEL 90 (540)
Q Consensus 11 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 90 (540)
+.+.+++++++++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 4578888888887 455443 368899999999887 566666678889999999999888666666788889999999
Q ss_pred cCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccC
Q 045304 91 GDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGIL 152 (540)
Q Consensus 91 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 152 (540)
++|.+++..+..|..+++|++|++++|.+++.+ +..+..+++|++|++++|.+.+..
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-----~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVP-----DGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-----TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeC-----HHHhcCCcccCEEEecCCCeeccC
Confidence 999888777777888888999999888887652 233567888888888888877654
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=5.5e-15 Score=128.80 Aligned_cols=130 Identities=19% Similarity=0.122 Sum_probs=74.5
Q ss_pred CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeC
Q 045304 257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV 336 (540)
Q Consensus 257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 336 (540)
+++|+.|++++|.++.+|......++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 3444444444444444432222222555555555555433 34555666666666666666544444566667777777
Q ss_pred cCccCcccCCc--ccCCCCCCCEEECCCCcCccccCcc----ccCCCCCCeEEcccCcce
Q 045304 337 GYNRLQGSIPY--SIGDLISLKSLNLSNNNLSGTIPVS----LEKLSYLEDLNLSFNKLA 390 (540)
Q Consensus 337 ~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~----~~~~~~L~~l~l~~n~l~ 390 (540)
++|.++ .+|. .+..+++|+.|++++|.++ .+|.. +..+++|+.+|+++|...
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 777665 3443 5666777777777777776 34443 667777777777777653
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=3e-17 Score=146.27 Aligned_cols=123 Identities=20% Similarity=0.295 Sum_probs=54.9
Q ss_pred CCCCCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeC
Q 045304 257 LASLRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFV 336 (540)
Q Consensus 257 l~~L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 336 (540)
+++|++|++++|.++++| .+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 333333333333333333 3333334444444444433 233333334444455555554443 22 3444455555555
Q ss_pred cCccCcccCC-cccCCCCCCCEEECCCCcCccccCcc----------ccCCCCCCeEE
Q 045304 337 GYNRLQGSIP-YSIGDLISLKSLNLSNNNLSGTIPVS----------LEKLSYLEDLN 383 (540)
Q Consensus 337 ~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~----------~~~~~~L~~l~ 383 (540)
++|.+++..+ ..+..+++|++|++++|.+++.+|.. +..+++|+.||
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5555543211 24455555555555555555443331 45566666665
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=4e-17 Score=145.44 Aligned_cols=155 Identities=24% Similarity=0.269 Sum_probs=129.2
Q ss_pred ccCCCCCCeeeeeCccccCcCCc------cccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCccccC
Q 045304 206 LSKLQKLQGLSLADNKLEGSIPN------NICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPLTFWN 279 (540)
Q Consensus 206 l~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~~~~~ 279 (540)
+.....++.++++.+.+.+.+|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++.+|..+..
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~ 91 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV 91 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence 45567888888888888888776 88899999999999999886 56 788899999999999999999887777
Q ss_pred CCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCc-cccccCCCCcEEeCcCccCcccCCcc----------
Q 045304 280 LKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIP-TTIGSLKGLQYLFVGYNRLQGSIPYS---------- 348 (540)
Q Consensus 280 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~---------- 348 (540)
+++|++|++++|.+.+ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 8899999999999986 44 68888999999999999986433 56888999999999999998776543
Q ss_pred cCCCCCCCEEECCCCcCc
Q 045304 349 IGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 349 ~~~l~~L~~L~l~~n~l~ 366 (540)
+..+++|+.|| +|.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 67888999887 56655
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.4e-14 Score=126.27 Aligned_cols=110 Identities=23% Similarity=0.230 Sum_probs=58.6
Q ss_pred ccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCC
Q 045304 182 ISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLR 261 (540)
Q Consensus 182 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 261 (540)
+.++++|+.|++++|.++. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3445566666666666552 333222223566666666665543 3455556666666666666544333345555666
Q ss_pred EeeCCCCCCCCCCc--cccCCCCCcEEECCCCccc
Q 045304 262 TLSLGSNELTSIPL--TFWNLKDILYLNFSSNFLT 294 (540)
Q Consensus 262 ~L~l~~n~l~~ip~--~~~~l~~L~~L~L~~n~l~ 294 (540)
+|++++|.++.+|. .+..+++|+.|++++|.+.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 66666666555554 4445555555555555554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=2.4e-13 Score=117.37 Aligned_cols=106 Identities=22% Similarity=0.193 Sum_probs=64.9
Q ss_pred CCEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304 260 LRTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN 339 (540)
Q Consensus 260 L~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 339 (540)
.+.+++++|.++.+|..+. ++|++|+|++|.+.+..|..+..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4566777777766665442 55666666666666555656666666666666666666555555556666666666666
Q ss_pred cCcccCCcccCCCCCCCEEECCCCcCcc
Q 045304 340 RLQGSIPYSIGDLISLKSLNLSNNNLSG 367 (540)
Q Consensus 340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (540)
++++..+..+..+++|+.|++++|.++.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 6665545555666666666666665553
No 142
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.46 E-value=1.9e-11 Score=121.03 Aligned_cols=328 Identities=16% Similarity=0.140 Sum_probs=149.6
Q ss_pred CccccCCC-CCCEEEcccCcCccccchhhhcCCCCCCEEEccCCc---ccccCCccccCCCCCCEEEccCCcccccCCcc
Q 045304 27 PTKVFNVS-TLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN---FCGTIPHFIFNASKLSLLELGDNSFSGFIPDT 102 (540)
Q Consensus 27 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~ 102 (540)
..+|.++. .|+.+.+..+ ++ .|...+|.++.+|+.+.+..+. ++..-...|.++.+|+.+.+..+ +..+....
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 34565553 4666666543 44 5666666666666666665542 44333455666666666665543 33344455
Q ss_pred ccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCccccccccccCcEEEccCCcceecCChhc
Q 045304 103 FGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGNLSHSLEYFYMPNCNVSGGIPEEI 182 (540)
Q Consensus 103 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~~l 182 (540)
|..+.+|+.+.+..+. ... -...+..+..|+.+.+..+ +... ....+.. ..|+.+.+..+.. ..-...+
T Consensus 133 F~~c~~L~~i~lp~~~-~~I-----~~~~F~~c~~L~~i~~~~~-~~~I-~~~aF~~--~~l~~i~ip~~~~-~i~~~af 201 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSV-----ADGMFSYCYSLHTVTLPDS-VTAI-EERAFTG--TALTQIHIPAKVT-RIGTNAF 201 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEE-----CTTTTTTCTTCCEEECCTT-CCEE-CTTTTTT--CCCSEEEECTTCC-EECTTTT
T ss_pred hhhhccccccccccee-eee-----cccceecccccccccccce-eeEe-ccccccc--cceeEEEECCccc-ccccchh
Confidence 6666677776665432 221 1123556666666666543 2111 1112211 3455555433221 1223345
Q ss_pred cCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeEEcCCCCCccccCccCCCCCCCCE
Q 045304 183 SNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYELDLGSNKFSRSIPACFSNLASLRT 262 (540)
Q Consensus 183 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 262 (540)
..+.+++......+.........+....... ..+ ..+.....+..+.+. +.+...-..+|..+.+|+.
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~ 269 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGD-YAL----------IRYPSQREDPAFKIP-NGVARIETHAFDSCAYLAS 269 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSC-EEE----------EECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCE
T ss_pred hhccccceecccccccccccceeeccccccc-ccc----------cccccccccceEEcC-CcceEcccceeeecccccE
Confidence 5555565555444332211000000000000 000 001111222222222 1222233344555555555
Q ss_pred eeCCCCCCCCC-CccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccC
Q 045304 263 LSLGSNELTSI-PLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRL 341 (540)
Q Consensus 263 L~l~~n~l~~i-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 341 (540)
+.+..+. ..+ ..+|.+++.|+.+.+.. .+...-...|.++.+|+.+++..+ ++.....+|..|.+|+.+.+..+ +
T Consensus 270 i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v 345 (394)
T 4gt6_A 270 VKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V 345 (394)
T ss_dssp EECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C
T ss_pred Eeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c
Confidence 5554332 122 22444555555555542 222223344555666666666543 44344556667777777777543 4
Q ss_pred cccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304 342 QGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387 (540)
Q Consensus 342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 387 (540)
+..-..+|.+|.+|+.+++.++.... ..+..+..|+.+.+..+
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 43445667777777777777664331 34455666666666544
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.45 E-value=3.1e-13 Score=116.73 Aligned_cols=110 Identities=19% Similarity=0.158 Sum_probs=97.9
Q ss_pred CCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECC
Q 045304 282 DILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS 361 (540)
Q Consensus 282 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 361 (540)
..+.+++++|.+.. +|..+. +.|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35789999999985 665553 789999999999999889999999999999999999998877788999999999999
Q ss_pred CCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 362 NNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 362 ~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
+|++++..+..|..+++|+.|++++|++.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998777789999999999999999987654
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.43 E-value=6e-13 Score=115.26 Aligned_cols=104 Identities=22% Similarity=0.207 Sum_probs=64.7
Q ss_pred CEeeCCCCCCCCCCccccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCcc
Q 045304 261 RTLSLGSNELTSIPLTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNR 340 (540)
Q Consensus 261 ~~L~l~~n~l~~ip~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 340 (540)
+.+++++|.++.+|..+. ++|++|+|++|++.+..|..+..+++|+.|+|++|++++..+..|..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566666666666665443 566666666666666556666666666666666666665444455666666666666666
Q ss_pred CcccCCcccCCCCCCCEEECCCCcCc
Q 045304 341 LQGSIPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 341 l~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
+++..+..+..+++|+.|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 66544444666666666666666665
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=1.6e-11 Score=121.55 Aligned_cols=329 Identities=12% Similarity=0.143 Sum_probs=174.5
Q ss_pred cccCCCC-CCCEEeccCcccccCCCccccCCCCCCEEEcccCc---CccccchhhhcCCCCCCEEEccCCcccccCCccc
Q 045304 4 HEIGNLR-NLELLVLSHNKLVGVIPTKVFNVSTLKVFEVSNNS---LSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFI 79 (540)
Q Consensus 4 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 79 (540)
.+|.+++ .|+.+.+..+ ++..-..+|.+|++|+.+.+..|. ++ .+...+|..+.+|+.+.+..+ ++..-...|
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhh
Confidence 3588885 5999999864 775667899999999999998764 55 788888899999999988765 554556778
Q ss_pred cCCCCCCEEEccCCcccccCCccccCCCCCCEEECcCccccCCCCCccccccCCCCCCCCEEECcCCCCCccCCcccccc
Q 045304 80 FNASKLSLLELGDNSFSGFIPDTFGNLRNLNKVTLYNNYLTSSTSDLNFLSSLSNCKTLTYIDLSDNPLDGILPGTSVGN 159 (540)
Q Consensus 80 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 159 (540)
.++.+|+.+.+..+ +..+....|..+..|+.+.+..+ ++.... ..| ....|+.+.+..+... . ....+..
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~-----~aF-~~~~l~~i~ip~~~~~-i-~~~af~~ 203 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEE-----RAF-TGTALTQIHIPAKVTR-I-GTNAFSE 203 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECT-----TTT-TTCCCSEEEECTTCCE-E-CTTTTTT
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEecc-----ccc-cccceeEEEECCcccc-c-ccchhhh
Confidence 89999999999754 34456678899999999999765 333211 123 3467888887654321 1 1122333
Q ss_pred ccccCcEEEccCCcceecCChhccCCCCCCeeeccCCccccccCccccCCCCCCeeeeeCccccCcCCccccCCCCCCeE
Q 045304 160 LSHSLEYFYMPNCNVSGGIPEEISNLTNLIIIYLGGNKLNGSIPITLSKLQKLQGLSLADNKLEGSIPNNICRLTELYEL 239 (540)
Q Consensus 160 l~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L 239 (540)
+ ..+............ +...+. ..+.........+.....+..+.+.. .+...-..+|..+..|+.+
T Consensus 204 c-~~l~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i 270 (394)
T 4gt6_A 204 C-FALSTITSDSESYPA-IDNVLY----------EKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASV 270 (394)
T ss_dssp C-TTCCEEEECCSSSCB-SSSCEE----------EECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEE
T ss_pred c-cccceeccccccccc-ccceee----------cccccccccccccccccccceEEcCC-cceEcccceeeecccccEE
Confidence 3 445555443332211 000000 00000000000011112222222221 1221222344444555555
Q ss_pred EcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcceEEcccceee
Q 045304 240 DLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFS 318 (540)
Q Consensus 240 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 318 (540)
.+..+.. .....+|.++++|+.+.+. +.++.++. +|.++.+|+.+.+..+ +...-..+|.++.+|+.+.+..+ ++
T Consensus 271 ~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~ 346 (394)
T 4gt6_A 271 KMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT 346 (394)
T ss_dssp ECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC
T ss_pred ecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC
Confidence 4443221 2333445555555555553 23344333 3444555555555433 22223345556666666666443 44
Q ss_pred ecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcC
Q 045304 319 GVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNL 365 (540)
Q Consensus 319 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 365 (540)
.....+|.+|.+|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 347 ~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 347 KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 3445566777777777776664331 3455566666666655543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.41 E-value=7.7e-13 Score=114.57 Aligned_cols=108 Identities=21% Similarity=0.230 Sum_probs=94.8
Q ss_pred CcEEECCCCcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCC
Q 045304 283 ILYLNFSSNFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSN 362 (540)
Q Consensus 283 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 362 (540)
-+.+++++|.+. .+|..+. ++|+.|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 368999999986 5666554 7899999999999988899999999999999999999977677788999999999999
Q ss_pred CcCccccCccccCCCCCCeEEcccCcceeeC
Q 045304 363 NNLSGTIPVSLEKLSYLEDLNLSFNKLAGEI 393 (540)
Q Consensus 363 n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~ 393 (540)
|++++..+..|..+++|+.|++++|++.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 9999776667999999999999999987544
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=6.4e-14 Score=136.86 Aligned_cols=146 Identities=14% Similarity=0.091 Sum_probs=69.5
Q ss_pred CCCCEEEccCCcccccCCcccc-CCCCCCEEEccCCcccccCCccc-----cCCCCCCEEECcCccccCCCCCccccccC
Q 045304 59 PNLEVLRMRSNNFCGTIPHFIF-NASKLSLLELGDNSFSGFIPDTF-----GNLRNLNKVTLYNNYLTSSTSDLNFLSSL 132 (540)
Q Consensus 59 ~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~~l 132 (540)
++|+.|+|++|.++......+. .+.+|++|+|++|.++......+ ...++|++|+|++|.++..... .+...+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~-~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVA-VLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHH-HHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHH-HHHHHH
Confidence 4555555555555432222221 23445555555555543322222 1345555555555555432110 022333
Q ss_pred CCCCCCCEEECcCCCCCccCC---ccccccccccCcEEEccCCccee----cCChhccCCCCCCeeeccCCccccccCcc
Q 045304 133 SNCKTLTYIDLSDNPLDGILP---GTSVGNLSHSLEYFYMPNCNVSG----GIPEEISNLTNLIIIYLGGNKLNGSIPIT 205 (540)
Q Consensus 133 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~l~~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 205 (540)
..+++|++|+|++|.+...-. ...+... ++|++|++++|.+++ .++..+...++|++|++++|.++......
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~-~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 258 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRN-RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQV 258 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGC-SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHH
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC-CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHH
Confidence 445556666666665543110 0122222 356666666666543 23344556677888888888776544333
Q ss_pred c
Q 045304 206 L 206 (540)
Q Consensus 206 l 206 (540)
+
T Consensus 259 L 259 (372)
T 3un9_A 259 L 259 (372)
T ss_dssp H
T ss_pred H
Confidence 3
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=2.3e-13 Score=132.86 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=57.1
Q ss_pred CCCcEEECCCCcccCCCcccc-----ccccCcceEEcccceeeec----CccccccCCCCcEEeCcCccCccc----CCc
Q 045304 281 KDILYLNFSSNFLTGPLPLEI-----ENLKVLVGIDFSVNNFSGV----IPTTIGSLKGLQYLFVGYNRLQGS----IPY 347 (540)
Q Consensus 281 ~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~ 347 (540)
++|+.|+|++|.++......+ ...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++. +..
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence 344555555555443222222 1234556666666655432 223334556666666666666532 234
Q ss_pred ccCCCCCCCEEECCCCcCccc----cCccccCCCCCCeEEcccCcce
Q 045304 348 SIGDLISLKSLNLSNNNLSGT----IPVSLEKLSYLEDLNLSFNKLA 390 (540)
Q Consensus 348 ~~~~l~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~l~ 390 (540)
.+...++|+.|+|++|.++.. +...+...++|++|++++|+++
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 445555666777776666542 2233344566777777777654
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.24 E-value=1.4e-09 Score=106.98 Aligned_cols=143 Identities=15% Similarity=0.133 Sum_probs=73.7
Q ss_pred ccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCCc-cccCCCCCcEEECCCCcccCCCccccccccCcc
Q 045304 230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIPL-TFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV 308 (540)
Q Consensus 230 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 308 (540)
+....+|+.+.+..+ +......+|..+..|+.+.+..+ ++.+.. ++.++.+|+.+.+..+ +.......|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444444444332 22233344445555555555433 333322 3444555555555432 2222233455666666
Q ss_pred eEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCC
Q 045304 309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLS 377 (540)
Q Consensus 309 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 377 (540)
.+.+.++.++.....+|.+|.+|+.+.|..+ ++..-..+|.+|.+|+.+.+..+ ++..-..+|.++.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6666666565555566777777777777543 44344566777777777777543 4433344555543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.23 E-value=2.9e-11 Score=117.65 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=60.7
Q ss_pred EeeCCCC-CCCCCCccccCCCCCcEEECCC-CcccCCCccccccccCcceEEcccceeeecCccccccCCCCcEEeCcCc
Q 045304 262 TLSLGSN-ELTSIPLTFWNLKDILYLNFSS-NFLTGPLPLEIENLKVLVGIDFSVNNFSGVIPTTIGSLKGLQYLFVGYN 339 (540)
Q Consensus 262 ~L~l~~n-~l~~ip~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 339 (540)
.++++++ .++.+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455554 5555555 55555666666654 6665555555666666666666666666666666666666666666666
Q ss_pred cCcccCCcccCCCCCCCEEECCCCcCc
Q 045304 340 RLQGSIPYSIGDLISLKSLNLSNNNLS 366 (540)
Q Consensus 340 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 366 (540)
+|++..+..+..++ |+.|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66644444444443 666666666655
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.22 E-value=3.2e-11 Score=117.27 Aligned_cols=108 Identities=22% Similarity=0.148 Sum_probs=96.2
Q ss_pred cEEECCCC-cccCCCccccccccCcceEEccc-ceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECC
Q 045304 284 LYLNFSSN-FLTGPLPLEIENLKVLVGIDFSV-NNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLS 361 (540)
Q Consensus 284 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 361 (540)
..++++++ .+. .+|. +..+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 787 4777 99999999999996 99999888999999999999999999999999999999999999999
Q ss_pred CCcCccccCccccCCCCCCeEEcccCcceeeCC
Q 045304 362 NNNLSGTIPVSLEKLSYLEDLNLSFNKLAGEIP 394 (540)
Q Consensus 362 ~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~~~p 394 (540)
+|++++..+..+..++ |+.|++.+|++.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 9999977777776666 9999999999987543
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.16 E-value=7.9e-09 Score=101.63 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=95.1
Q ss_pred ccCCCCCCeEEcCCCCCccccCccCCCCCCCCEeeCCCCCCCCCC-ccccCCCCCcEEECCCCcccCCCccccccccCcc
Q 045304 230 ICRLTELYELDLGSNKFSRSIPACFSNLASLRTLSLGSNELTSIP-LTFWNLKDILYLNFSSNFLTGPLPLEIENLKVLV 308 (540)
Q Consensus 230 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ip-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 308 (540)
+.....+..+.+.... .......+..+.+|+.+.+..+ +..+. ..+..+..|+.+.+..+ +...-...+..+..|+
T Consensus 190 ~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~ 266 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALK 266 (379)
T ss_dssp CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhc
Confidence 3344445555544322 2234455666777777777543 33333 35667777777777655 3333445666777777
Q ss_pred eEEcccceeeecCccccccCCCCcEEeCcCccCcccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccC
Q 045304 309 GIDFSVNNFSGVIPTTIGSLKGLQYLFVGYNRLQGSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFN 387 (540)
Q Consensus 309 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 387 (540)
.+.+..+ +.......|..|.+|+.+.+..+.++..-..+|.++.+|+.+++..+ ++..-..+|.++++|+.+.+..+
T Consensus 267 ~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 267 TLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 7777543 44444566777788888888777776555677777888888887644 55444566777777877776543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=1.2e-10 Score=112.60 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=39.8
Q ss_pred ccCcceEEcccceeeecCcccc---ccCCCCcEEeCcCccCccc----CCcccCCCCCCCEEECCCCcCccccCccccC-
Q 045304 304 LKVLVGIDFSVNNFSGVIPTTI---GSLKGLQYLFVGYNRLQGS----IPYSIGDLISLKSLNLSNNNLSGTIPVSLEK- 375 (540)
Q Consensus 304 l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~- 375 (540)
+++|+.|+|.+|.+.+..+..+ ..+++|+.|+|+.|.+++. ++..+..+++|+.|++++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 3455555555555443222222 1345566666666666542 2222334566666666666665433222322
Q ss_pred CCCCCeEEcccCc
Q 045304 376 LSYLEDLNLSFNK 388 (540)
Q Consensus 376 ~~~L~~l~l~~n~ 388 (540)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2445666554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.4e-09 Score=105.11 Aligned_cols=102 Identities=19% Similarity=0.229 Sum_probs=59.6
Q ss_pred CCCCEEeccCccccc-C-------CCccccCCCCCCEEEcccCcCc---------cccchhhhcCCCCCCEEEccCCccc
Q 045304 10 RNLELLVLSHNKLVG-V-------IPTKVFNVSTLKVFEVSNNSLS---------GSLSSIAGVRLPNLEVLRMRSNNFC 72 (540)
Q Consensus 10 ~~L~~L~L~~n~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~~l~~L~~L~L~~n~l~ 72 (540)
..++.|.+....+.+ . +..+...+++|+.|.+...... +.+...+ ..+|+|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll-~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVL-DAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHH-HTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHH-hcCCCCcEEEEeCCCCc
Confidence 456677776555432 1 1223445678888887654321 1233333 56788888888776311
Q ss_pred ccCCccccCCCCCCEEEccCCcccccCCcccc--CCCCCCEEECc
Q 045304 73 GTIPHFIFNASKLSLLELGDNSFSGFIPDTFG--NLRNLNKVTLY 115 (540)
Q Consensus 73 ~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~--~l~~L~~L~l~ 115 (540)
.++. + .+++|++|++..|.+.......+. .+++|++|+|+
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 2232 3 367888888887776544333333 67888888775
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=4.2e-08 Score=85.46 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=6.6
Q ss_pred cCCCCCCeEEcCCC
Q 045304 231 CRLTELYELDLGSN 244 (540)
Q Consensus 231 ~~l~~L~~L~l~~n 244 (540)
...++|++|+|++|
T Consensus 33 ~~~~~L~~L~L~~n 46 (185)
T 1io0_A 33 NNDPDLEEVNLNNI 46 (185)
T ss_dssp TTCTTCCEEECTTC
T ss_pred hcCCCCCEEEecCC
Confidence 33444445555444
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.44 E-value=4.7e-08 Score=85.17 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=21.5
Q ss_pred cccCCCCCCeeeeeCc-cccCc----CCccccCCCCCCeEEcCCCCCc
Q 045304 205 TLSKLQKLQGLSLADN-KLEGS----IPNNICRLTELYELDLGSNKFS 247 (540)
Q Consensus 205 ~l~~l~~L~~L~l~~n-~~~~~----~p~~~~~l~~L~~L~l~~n~l~ 247 (540)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3445566666666666 55421 2223334455555555555544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=4.4e-08 Score=89.67 Aligned_cols=85 Identities=19% Similarity=0.295 Sum_probs=45.5
Q ss_pred cCCCCCCEEEccCCcccc--cCCccccCCCCCCEEEccCCcccccCCccccCCC--CCCEEECcCccccCCCCCc--ccc
Q 045304 56 VRLPNLEVLRMRSNNFCG--TIPHFIFNASKLSLLELGDNSFSGFIPDTFGNLR--NLNKVTLYNNYLTSSTSDL--NFL 129 (540)
Q Consensus 56 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~--~~~ 129 (540)
..+++|+.|+|++|.+++ .++..+..+++|++|+|++|.+++. ..+..+. +|++|+|.+|.+.+..... -..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 346666666666666665 3345555666666666666666643 2233233 6666776666665421000 011
Q ss_pred ccCCCCCCCCEEE
Q 045304 130 SSLSNCKTLTYID 142 (540)
Q Consensus 130 ~~l~~l~~L~~L~ 142 (540)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2245566666665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=7.7e-08 Score=88.06 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=46.3
Q ss_pred cccCcceEEcccceeee--cCccccccCCCCcEEeCcCccCccc-CCcccCCCCCCCEEECCCCcCccccCc-------c
Q 045304 303 NLKVLVGIDFSVNNFSG--VIPTTIGSLKGLQYLFVGYNRLQGS-IPYSIGDLISLKSLNLSNNNLSGTIPV-------S 372 (540)
Q Consensus 303 ~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-------~ 372 (540)
.+++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ....+..+ +|++|+|++|.+.+.+|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 44556666666666655 3345555666666777776666643 11222233 677777777777665542 2
Q ss_pred ccCCCCCCeEE
Q 045304 373 LEKLSYLEDLN 383 (540)
Q Consensus 373 ~~~~~~L~~l~ 383 (540)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45566776665
No 159
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=98.13 E-value=3e-07 Score=86.78 Aligned_cols=42 Identities=29% Similarity=0.474 Sum_probs=32.3
Q ss_pred CeeccCCCCcEEEEEec------CCCEEEEEEeccccCC-cchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+.||+|+||+||||++. +++.||||++.....+ ..++|.+|+
T Consensus 32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~ 80 (308)
T 4gt4_A 32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEA 80 (308)
T ss_dssp EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHH
T ss_pred eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHH
Confidence 45999999999999983 4678999999755433 346799887
No 160
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=98.12 E-value=5.9e-07 Score=85.62 Aligned_cols=48 Identities=31% Similarity=0.422 Sum_probs=37.3
Q ss_pred cCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccCCcchhhhhhcC
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSGAFKSFDVECN 540 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~~~~~F~~E~~ 540 (540)
+|.-.+.||+|+||+||+|++. +|+.||||+++....+..++|.+|++
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~ 95 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAE 95 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHH
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHH
Confidence 3444567999999999999974 47899999997655445677999873
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=1.5e-06 Score=73.63 Aligned_cols=92 Identities=11% Similarity=0.067 Sum_probs=60.1
Q ss_pred CCccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEccCCc-ccccCCccccCC----CCCCEEEccCCc-ccccC
Q 045304 26 IPTKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRMRSNN-FCGTIPHFIFNA----SKLSLLELGDNS-FSGFI 99 (540)
Q Consensus 26 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-~~~~~ 99 (540)
+|.....-.+|+.||++++.++..--..+ ..+++|+.|+|++|. ++..--..+..+ ++|++|+|++|. ++..-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 34433333568888888887764433334 578888888888874 554333445543 368888888875 66554
Q ss_pred CccccCCCCCCEEECcCcc
Q 045304 100 PDTFGNLRNLNKVTLYNNY 118 (540)
Q Consensus 100 ~~~~~~l~~L~~L~l~~n~ 118 (540)
-..+..+++|++|+++++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 4556778888888888874
No 162
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=98.07 E-value=9.8e-07 Score=82.87 Aligned_cols=47 Identities=32% Similarity=0.429 Sum_probs=34.7
Q ss_pred CCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccCCcchhhhhhcC
Q 045304 494 FSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSGAFKSFDVECN 540 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~~~~~F~~E~~ 540 (540)
|.-.+.||+|+||+||+|++. +|+.||||+++....+..++|.+|++
T Consensus 15 ~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~ 67 (299)
T 4asz_A 15 IVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAE 67 (299)
T ss_dssp EEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHH
T ss_pred eEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHH
Confidence 444567999999999999974 47889999997655455677999873
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.8e-06 Score=71.97 Aligned_cols=86 Identities=12% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCCCCEEEccCCcccccCCccccCCCCCCEEEccCCc-ccccCCccccCC----CCCCEEECcCcc-ccCCCCCcccccc
Q 045304 58 LPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDNS-FSGFIPDTFGNL----RNLNKVTLYNNY-LTSSTSDLNFLSS 131 (540)
Q Consensus 58 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~~ 131 (540)
-.+|+.||+++|.++..--..+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. ++.. -...
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-----Gl~~ 134 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-----GIIA 134 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-----HHHH
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-----HHHH
Confidence 3568899999888776555667788889999998885 665444455554 468899998874 5543 2345
Q ss_pred CCCCCCCCEEECcCCCC
Q 045304 132 LSNCKTLTYIDLSDNPL 148 (540)
Q Consensus 132 l~~l~~L~~L~l~~n~l 148 (540)
+..+++|+.|++++|.-
T Consensus 135 L~~~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPG 151 (176)
T ss_dssp GGGCTTCCEEEEESCTT
T ss_pred HhcCCCCCEEECCCCCC
Confidence 66788899999988853
No 164
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=97.96 E-value=5.9e-06 Score=78.28 Aligned_cols=61 Identities=38% Similarity=0.621 Sum_probs=49.3
Q ss_pred ccccccHHHHHHHhccCCcc------CeeccCCCCcEEEEEecCCCEEEEEEecccc----CCcchhhhhhc
Q 045304 478 TWRRFSYLELCRATDRFSEN------NLIGRGGFGSVYKARIQDGMEVAVKVFHLHC----SGAFKSFDVEC 539 (540)
Q Consensus 478 ~~~~~~~~~l~~at~~f~~~------~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~----~~~~~~F~~E~ 539 (540)
....|++.++..+|++|++. +.||+|+||.||+|+. +|+.||||++.... ....+.|.+|+
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~ 81 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEI 81 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHH
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHH
Confidence 34678999999999999998 8999999999999998 58999999996432 12234576665
No 165
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=97.93 E-value=3.7e-06 Score=80.47 Aligned_cols=62 Identities=47% Similarity=0.737 Sum_probs=50.2
Q ss_pred ccccccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 478 TWRRFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 478 ~~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
..+.+++.++..++++|...+.||+|+||.||+|...+|+.||||++..... .....|..|+
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~ 78 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEV 78 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHH
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHH
Confidence 4567899999999999999999999999999999998899999999975442 2234566665
No 166
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=97.91 E-value=6.1e-06 Score=78.78 Aligned_cols=62 Identities=24% Similarity=0.176 Sum_probs=47.3
Q ss_pred ccccccHHHHHHHhcc----------CCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 478 TWRRFSYLELCRATDR----------FSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 478 ~~~~~~~~~l~~at~~----------f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
....++++++++|++. |.....||+|+||.||+|+.. +|+.||||++.....+..+.|..|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~ 93 (321)
T 2c30_A 21 QSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEV 93 (321)
T ss_dssp ----CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHH
T ss_pred cCCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHH
Confidence 3457899999999975 555678999999999999986 7999999999765544455677765
No 167
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=97.90 E-value=1.9e-06 Score=82.33 Aligned_cols=59 Identities=37% Similarity=0.594 Sum_probs=47.8
Q ss_pred cccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.+++.++..++++|.....||+|+||.||+|+..+|+.||||++........++|.+|+
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~ 86 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEI 86 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHH
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHH
Confidence 44555667788999999999999999999999988999999999765555556677775
No 168
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=97.66 E-value=2.7e-05 Score=74.26 Aligned_cols=46 Identities=28% Similarity=0.242 Sum_probs=36.5
Q ss_pred CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
|..-..||+|+||+||+|+- .+|+.||||++........+.|.+|+
T Consensus 76 y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei 122 (346)
T 4fih_A 76 LDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEV 122 (346)
T ss_dssp EEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHH
T ss_pred cEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHH
Confidence 44556799999999999987 46999999999755544456688886
No 169
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=97.60 E-value=1.6e-05 Score=74.68 Aligned_cols=42 Identities=36% Similarity=0.639 Sum_probs=32.1
Q ss_pred ccCeeccCCCCcEEEEEecCCCEEEEEEecccc--CCcchhhhhhc
Q 045304 496 ENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
-.+.||+|+||+||+|++.+ .||||+++... .+..++|.+|+
T Consensus 40 l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~ 83 (307)
T 3omv_A 40 LSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEV 83 (307)
T ss_dssp EEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHH
T ss_pred EeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHH
Confidence 34679999999999999853 69999996433 22346788887
No 170
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=97.50 E-value=5.8e-05 Score=73.94 Aligned_cols=47 Identities=28% Similarity=0.224 Sum_probs=37.4
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.|.....||+|+||+||+|+- .+|+.||||++........+.|.+|+
T Consensus 152 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei 199 (423)
T 4fie_A 152 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEV 199 (423)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHH
T ss_pred hcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHH
Confidence 355667899999999999987 46899999999765544456677876
No 171
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=97.43 E-value=4.4e-05 Score=71.11 Aligned_cols=42 Identities=31% Similarity=0.309 Sum_probs=32.3
Q ss_pred CeeccCCCCcEEEEEec-CCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
..||+|+||+||+|+.. .|+.||||++..... ...+.|.+|+
T Consensus 32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~ 76 (290)
T 3fpq_A 32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEA 76 (290)
T ss_dssp EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHH
Confidence 46999999999999874 588999999965432 2245688886
No 172
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=97.35 E-value=5.4e-05 Score=72.25 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=29.7
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
+|.-.+.||+|+||+||+|+- .+|+.||||++...... ..+.|.+|+
T Consensus 25 ~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~ 74 (350)
T 4b9d_A 25 KYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREV 74 (350)
T ss_dssp CEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHH
Confidence 455567899999999999986 56999999999654322 245688886
No 173
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=97.33 E-value=5.8e-05 Score=72.49 Aligned_cols=48 Identities=29% Similarity=0.406 Sum_probs=35.7
Q ss_pred ccCCccCeeccCCCCcEEEEEecC------CCEEEEEEeccccCC-cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
++|.-.+.||+|+||+||+|+..+ ++.||||++...... ..++|.+|+
T Consensus 64 ~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~ 118 (353)
T 4ase_A 64 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSEL 118 (353)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHH
Confidence 345556789999999999998742 358999999765432 245688886
No 174
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=97.30 E-value=0.0001 Score=67.90 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=32.3
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||+||+|+- .+|+.||||++.... ....+.|.+|+
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei 64 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREI 64 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHH
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHH
Confidence 4566678899999999999986 569999999996433 12234577776
No 175
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=97.26 E-value=9.3e-05 Score=70.60 Aligned_cols=58 Identities=28% Similarity=0.432 Sum_probs=33.4
Q ss_pred ccHHHHHHHhccCCc---------cCeeccCCCCcEEEEEec----CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 482 FSYLELCRATDRFSE---------NNLIGRGGFGSVYKARIQ----DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 482 ~~~~~l~~at~~f~~---------~~~ig~G~~G~Vykg~l~----~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
.++.+...++..|.. .+.||+|+||.||+|+.. .+..||||++..... ...++|.+|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 101 (325)
T 3kul_A 30 HTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEA 101 (325)
T ss_dssp -------------CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence 455566666655544 478999999999999983 455799999975432 2245577775
No 176
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=97.21 E-value=0.00016 Score=70.12 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=40.1
Q ss_pred ccHHHHHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 482 FSYLELCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 482 ~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
..+.++...++.|.-.+.||+|+||.||+|.-.+|+.||||++..
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~ 56 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFN 56 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECE
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccc
Confidence 345678888999999999999999999999998899999999954
No 177
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00014 Score=71.10 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=35.0
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||+||+|+- .+|+.||||++..... ...+.+.+|+
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei 104 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLREL 104 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHH
Confidence 455567899999999999986 5699999999964332 2234566775
No 178
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.14 E-value=0.00018 Score=62.01 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=7.7
Q ss_pred ccCCCCCCeEEcccCc
Q 045304 373 LEKLSYLEDLNLSFNK 388 (540)
Q Consensus 373 ~~~~~~L~~l~l~~n~ 388 (540)
+..-+.|+.|+++.|.
T Consensus 153 L~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 153 IEENESLLRVGISFAS 168 (197)
T ss_dssp HHHCSSCCEEECCCCC
T ss_pred HHhCCCcCeEeccCCC
Confidence 3344455555555443
No 179
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.13 E-value=0.00016 Score=71.47 Aligned_cols=50 Identities=16% Similarity=0.152 Sum_probs=36.3
Q ss_pred HhccCCccCeeccCCCCcEEEEE-ecCCCEEEEEEeccccCC---cchhhhhhc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKAR-IQDGMEVAVKVFHLHCSG---AFKSFDVEC 539 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~-l~~g~~vAVK~l~~~~~~---~~~~F~~E~ 539 (540)
.+..|...++||+|+||+||+|+ ..+|+.||||++...... ..+.|.+|+
T Consensus 76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~ 129 (413)
T 3dzo_A 76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEV 129 (413)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHH
T ss_pred CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHH
Confidence 44557777899999999999999 467999999999733221 234455554
No 180
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=97.12 E-value=0.00014 Score=68.16 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.2
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||+||+|+- .+|+.||||++.... ....+.|.+|+
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~ 83 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRER 83 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHH
Confidence 4566778899999999999986 568999999996432 22335577775
No 181
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=97.11 E-value=0.00019 Score=67.23 Aligned_cols=47 Identities=21% Similarity=0.304 Sum_probs=30.0
Q ss_pred cCCccCeeccCCCCcEEEEEe----cCCCEEEEEEecccc--CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
+|.-.+.||+|+||+||+|+- ..|+.||||++.... ......|..|+
T Consensus 25 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~ 77 (304)
T 3ubd_A 25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMER 77 (304)
T ss_dssp GEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------
T ss_pred ccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHH
Confidence 455667899999999999975 246899999996433 12234566675
No 182
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=97.11 E-value=6.1e-05 Score=71.42 Aligned_cols=36 Identities=33% Similarity=0.505 Sum_probs=31.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
++|...+.||+|+||+||+|+.. +|+.||||++...
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~ 93 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSP 93 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSS
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEeccc
Confidence 46888889999999999999986 7899999998643
No 183
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=0.00027 Score=60.97 Aligned_cols=112 Identities=13% Similarity=0.097 Sum_probs=61.6
Q ss_pred CCCCCCCCEeeCCCC-CCCC-----CCccccCCCCCcEEECCCCcccCC----CccccccccCcceEEcccceeeecC--
Q 045304 254 FSNLASLRTLSLGSN-ELTS-----IPLTFWNLKDILYLNFSSNFLTGP----LPLEIENLKVLVGIDFSVNNFSGVI-- 321 (540)
Q Consensus 254 ~~~l~~L~~L~l~~n-~l~~-----ip~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-- 321 (540)
+..-+.|+.|+|++| .+.. +...+..-+.|+.|+|++|.+... +...+..-+.|++|+|+.|.|...-
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566777777764 6653 333455556777777777776532 2333444566777777777766432
Q ss_pred --ccccccCCCCcEEeCcCc---cCcc----cCCcccCCCCCCCEEECCCCcC
Q 045304 322 --PTTIGSLKGLQYLFVGYN---RLQG----SIPYSIGDLISLKSLNLSNNNL 365 (540)
Q Consensus 322 --~~~~~~l~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~l 365 (540)
-..+..-+.|++|+|++| .+.. .+...+..-++|+.|+++.|.+
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 223334455677777644 2221 1223334445666666665543
No 184
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=97.03 E-value=0.0004 Score=65.00 Aligned_cols=46 Identities=22% Similarity=0.353 Sum_probs=34.2
Q ss_pred CCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+....+||+|+||.||+|+- .+|+.||||++........+.|..|+
T Consensus 24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~ 70 (295)
T 2clq_A 24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEI 70 (295)
T ss_dssp TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHH
T ss_pred CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHH
Confidence 45556899999999999996 56889999999765444445576665
No 185
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=96.98 E-value=0.0003 Score=70.52 Aligned_cols=48 Identities=25% Similarity=0.402 Sum_probs=38.5
Q ss_pred hccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.++|.-.+.||+|+||.||+|...+++.||||++..... ..++|..|+
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~ 234 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSM-SVEAFLAEA 234 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHH
T ss_pred hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCc-cHHHHHHHH
Confidence 345666788999999999999998889999999975432 356688775
No 186
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=96.97 E-value=0.00015 Score=71.99 Aligned_cols=44 Identities=23% Similarity=0.424 Sum_probs=37.3
Q ss_pred cHHHHHHHhccCCccCeeccCCCCcEEEEEecC-CCEEEEEEecc
Q 045304 483 SYLELCRATDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHL 526 (540)
Q Consensus 483 ~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~ 526 (540)
.+.+++.++++|...++||+|+||+||+|+..+ |+.||||++..
T Consensus 65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~ 109 (437)
T 4aw2_A 65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNK 109 (437)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEH
T ss_pred hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEH
Confidence 445666678899999999999999999999864 78999999964
No 187
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=96.96 E-value=0.00019 Score=69.92 Aligned_cols=48 Identities=25% Similarity=0.472 Sum_probs=36.0
Q ss_pred ccCCccCeeccCCCCcEEEEEec----CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ----DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~----~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
++|...+.||+|+||.||+|+.. +|..||||++..... ...++|.+|+
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 97 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEA 97 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHH
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHH
Confidence 45677889999999999999985 577899999975432 2345677775
No 188
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=96.86 E-value=0.00042 Score=65.52 Aligned_cols=48 Identities=29% Similarity=0.463 Sum_probs=34.6
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
+.|...+.||+|+||+||+|+..+|+.||||++..... +..+.|.+|+
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~ 70 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREI 70 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHH
T ss_pred hhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHH
Confidence 34556688999999999999998899999999964332 1234466664
No 189
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=96.85 E-value=0.00034 Score=67.53 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHhccCCccCeeccCCCCcEEEEEe----cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 489 RATDRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 489 ~at~~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
...+.|.-.+.||+|+||+||+|+- ..++.||||++.... ....+.+|+
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~ 70 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAEL 70 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHH
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHH
Confidence 3456677788999999999999974 246789999996433 223455554
No 190
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=96.84 E-value=0.00064 Score=63.80 Aligned_cols=48 Identities=27% Similarity=0.382 Sum_probs=36.8
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.|...+.||+|+||+||+|.- .+|+.||||++........+.|..|+
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~ 68 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEI 68 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHH
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHH
Confidence 4566678899999999999985 67899999999755444445566664
No 191
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=96.80 E-value=0.00047 Score=67.19 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=36.3
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
+.|.-.+.||+|+||.||+|+. .+|+.||||++.... ....+.|.+|+
T Consensus 73 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~ 124 (377)
T 3byv_A 73 RTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEV 124 (377)
T ss_dssp EEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHH
T ss_pred ceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHH
Confidence 4455568899999999999996 569999999996432 22345677775
No 192
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=96.80 E-value=0.00037 Score=67.79 Aligned_cols=45 Identities=24% Similarity=0.402 Sum_probs=30.2
Q ss_pred CccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 495 SENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 495 ~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
...++||+|+||.||+|+. .+|+.||||++........++|.+|+
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~ 137 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEI 137 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHH
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHH
Confidence 4457899999999999987 56899999999765434455677775
No 193
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=96.80 E-value=0.00036 Score=66.80 Aligned_cols=35 Identities=29% Similarity=0.584 Sum_probs=29.5
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
++|.-.+.||+|+||.||+|+. +|+.||||++...
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~ 54 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIE 54 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEES
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecC
Confidence 3455568899999999999998 6899999999654
No 194
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=96.79 E-value=0.00049 Score=63.99 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=33.6
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|...++..||||++..... ..++|.+|+
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~ 70 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEA 70 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHH
T ss_pred HHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHH
Confidence 34555678999999999999999888999999975432 235577665
No 195
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=96.77 E-value=0.0003 Score=69.35 Aligned_cols=44 Identities=27% Similarity=0.431 Sum_probs=37.2
Q ss_pred cHHHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 483 SYLELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 483 ~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
.+.+....+++|...++||+|+||.||+|+.. +|+.||||++..
T Consensus 52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k 96 (412)
T 2vd5_A 52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNK 96 (412)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH
T ss_pred hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeH
Confidence 44555566788999999999999999999984 689999999954
No 196
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=96.77 E-value=0.00056 Score=68.44 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=37.2
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|...++..||||++..... ..++|..|+
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~ 230 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEA 230 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHH
T ss_pred hHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHH
Confidence 34556678999999999999998888899999975442 345687775
No 197
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=96.75 E-value=0.00074 Score=63.90 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=33.0
Q ss_pred CeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++||+|+||.||+|+- .+|+.||||++........+.+.+|+
T Consensus 19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~ 61 (316)
T 2ac3_A 19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREV 61 (316)
T ss_dssp CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHH
T ss_pred ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHH
Confidence 6799999999999985 57899999999755444445566665
No 198
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=96.75 E-value=0.00039 Score=67.79 Aligned_cols=48 Identities=31% Similarity=0.446 Sum_probs=36.1
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|+.. +|+.||||++..... ...++|..|+
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 163 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEA 163 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHH
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHH
Confidence 34555678999999999999995 689999999975432 2234577765
No 199
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=96.74 E-value=0.00056 Score=63.41 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=36.5
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.|.-...||+|+||.||+|...++..||||++..... ..+.|..|+
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~ 59 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEA 59 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHH
T ss_pred HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHH
Confidence 34555678999999999999998888999999965432 345577665
No 200
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=96.74 E-value=0.00041 Score=67.99 Aligned_cols=47 Identities=23% Similarity=0.299 Sum_probs=36.5
Q ss_pred cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||.||+|...+|+.||||++..... +..++|.+|+
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei 105 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEI 105 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred ceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHH
Confidence 3666788999999999999998899999999964432 2235577765
No 201
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=96.72 E-value=0.00066 Score=64.39 Aligned_cols=36 Identities=33% Similarity=0.577 Sum_probs=29.8
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
+.|.....||+|+||+||+|+- .+|+.||||+++..
T Consensus 58 ~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~ 94 (336)
T 4g3f_A 58 HWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE 94 (336)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred hheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHH
Confidence 4455667899999999999986 56899999999643
No 202
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=96.70 E-value=0.00089 Score=62.36 Aligned_cols=37 Identities=38% Similarity=0.574 Sum_probs=30.3
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC 528 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~ 528 (540)
+.|.-.+.||+|+||.||+|+. .+|+.||||++....
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~ 56 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGD 56 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCT
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccc
Confidence 4455668899999999999998 478999999996443
No 203
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=96.68 E-value=0.00074 Score=62.76 Aligned_cols=40 Identities=20% Similarity=0.218 Sum_probs=31.2
Q ss_pred HHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 488 CRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 488 ~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
.....-+.-.+.||+|+||.||+|...+|+.||||++..+
T Consensus 86 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~ 125 (282)
T 1zar_A 86 VRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVG 125 (282)
T ss_dssp HHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC-
T ss_pred HhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECC
Confidence 3333344455889999999999999987999999999643
No 204
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=96.68 E-value=0.00021 Score=69.08 Aligned_cols=55 Identities=25% Similarity=0.322 Sum_probs=40.1
Q ss_pred HHHHHHhccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304 485 LELCRATDRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
.+.....++|.-...||+|+||.||+|+. .+|+.||||++...... ..+.|.+|+
T Consensus 15 ~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 76 (359)
T 3vhe_A 15 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSEL 76 (359)
T ss_dssp HHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHH
Confidence 34444567788889999999999999974 34679999999754322 234577775
No 205
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=96.68 E-value=0.00048 Score=65.10 Aligned_cols=47 Identities=30% Similarity=0.383 Sum_probs=35.7
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
++|.-...||+|+||+||+|+. +|+.||||++...... ..++|.+|+
T Consensus 37 ~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~ 85 (309)
T 3p86_A 37 CDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREV 85 (309)
T ss_dssp GGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHH
T ss_pred hHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHH
Confidence 4566678899999999999998 5899999999654322 234577775
No 206
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=96.66 E-value=0.00026 Score=67.44 Aligned_cols=58 Identities=26% Similarity=0.405 Sum_probs=41.5
Q ss_pred cccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 481 RFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 481 ~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.+++.++....+.|.-.+.||+|+||.||+|+. .+|+.||||++..... ..++|..|+
T Consensus 13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~ 71 (326)
T 2x7f_A 13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEI 71 (326)
T ss_dssp ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHH
T ss_pred hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHH
Confidence 344445556677788889999999999999998 4689999999964332 234566654
No 207
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=96.64 E-value=0.00073 Score=69.16 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=37.3
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|+..+++.||||++..... ..++|..|+
T Consensus 267 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~ 313 (535)
T 2h8h_A 267 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEA 313 (535)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHH
T ss_pred hhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHH
Confidence 34555678999999999999998888899999975443 345687776
No 208
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=96.63 E-value=0.00063 Score=64.80 Aligned_cols=46 Identities=30% Similarity=0.448 Sum_probs=35.6
Q ss_pred CCccCeeccCCCCcEEEEEe-----cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARI-----QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-----~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
|.-.+.||+|+||.||+|++ .+|+.||||++........++|.+|+
T Consensus 43 y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~ 93 (326)
T 2w1i_A 43 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREI 93 (326)
T ss_dssp EEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHH
T ss_pred ceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHH
Confidence 44557899999999999985 36889999999765444455677775
No 209
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=96.58 E-value=0.00082 Score=67.18 Aligned_cols=45 Identities=29% Similarity=0.427 Sum_probs=35.9
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|... |+.||||++.... ..++|.+|+
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~ 237 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEA 237 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHH
T ss_pred HHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHH
Confidence 45556688999999999999995 7899999997543 345677775
No 210
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=96.58 E-value=0.00081 Score=68.12 Aligned_cols=47 Identities=23% Similarity=0.411 Sum_probs=36.9
Q ss_pred ccCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.+|.-.+.||+|+||.||+|+..+ |+.||||++..... ..++|.+|+
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~ 267 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEA 267 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHH
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHH
Confidence 345666889999999999999965 78999999975433 356687775
No 211
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=96.57 E-value=0.00063 Score=66.11 Aligned_cols=48 Identities=25% Similarity=0.427 Sum_probs=34.6
Q ss_pred ccCCccCeeccCCCCcEEEEEe--------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI--------QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l--------~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|+. .++..||||++..... ...++|..|+
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 137 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM 137 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHH
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHH
Confidence 4555667899999999999986 2456899999965432 2234576665
No 212
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=96.57 E-value=0.00062 Score=67.01 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=35.2
Q ss_pred HHHHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 485 LELCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
.+++...++|.-.++||+|+||+||+|+.. +|+.||||++..
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k 104 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK 104 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEeh
Confidence 445556778988999999999999999985 588999999954
No 213
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0043 Score=49.77 Aligned_cols=57 Identities=26% Similarity=0.314 Sum_probs=34.5
Q ss_pred EEeCcCccCc-ccCCcccCCCCCCCEEECCCCcCccccCccccCCCCCCeEEcccCccee
Q 045304 333 YLFVGYNRLQ-GSIPYSIGDLISLKSLNLSNNNLSGTIPVSLEKLSYLEDLNLSFNKLAG 391 (540)
Q Consensus 333 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~l~~ 391 (540)
.++.+++.++ ..+|..+ .++|+.|+|++|+|+...+..|..+++|+.|++++|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4555555554 2344332 1356777777777776555666777777777776666544
No 214
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=96.56 E-value=0.0012 Score=61.96 Aligned_cols=48 Identities=29% Similarity=0.478 Sum_probs=34.9
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.|.-...||+|+||.||+|+.. +|+.||||++........+.|..|+
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~ 67 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEI 67 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHH
T ss_pred cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHH
Confidence 34555678999999999999985 4889999999765544456677665
No 215
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=96.56 E-value=0.00082 Score=63.86 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=29.5
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
++|.-.+.||+|+||+||+|+.. |+.||||++...
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~ 58 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ 58 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG
T ss_pred hhchhhheecccCceEEEEEEEC-CCEEEEEEeecC
Confidence 45566788999999999999985 799999999643
No 216
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=96.54 E-value=0.00066 Score=64.28 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=34.6
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|+- .+|+.||||++........+.|.+|+
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~ 77 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREA 77 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHH
Confidence 4566678899999999999997 67899999999654433345566665
No 217
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=96.54 E-value=0.00056 Score=65.19 Aligned_cols=47 Identities=30% Similarity=0.410 Sum_probs=35.5
Q ss_pred cCCccCeeccCCCCcEEEEEe-----cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-----QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-----~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||.||+|++ .+|+.||||++........+.|.+|+
T Consensus 24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~ 75 (327)
T 3lxl_A 24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREI 75 (327)
T ss_dssp GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHH
T ss_pred hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHH
Confidence 345567899999999999995 46889999999755433345577765
No 218
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=96.52 E-value=0.00072 Score=65.56 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=29.8
Q ss_pred HhccCCccCeeccCCCCcEEEEE------ecCCCEEEEEEeccc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKAR------IQDGMEVAVKVFHLH 527 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~------l~~g~~vAVK~l~~~ 527 (540)
..+.|...+.||+|+||+||+|+ ..+|+.||||++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 106 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA 106 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC
Confidence 34567777899999999999994 566899999999643
No 219
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=96.50 E-value=0.00076 Score=63.78 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=38.0
Q ss_pred HhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
..+.|.-...||+|+||.||+|...+|+.||||++...... ..+.|..|+
T Consensus 26 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~ 77 (313)
T 3cek_A 26 KGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEI 77 (313)
T ss_dssp TTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHH
T ss_pred ccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHH
Confidence 44556677889999999999999988999999999643322 234566664
No 220
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=96.49 E-value=0.00093 Score=63.85 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=32.1
Q ss_pred cHHHHHHHhccCCc---------cCeeccCCCCcEEEEEecC-----CCEEEEEEeccccCC-cchhhhhhc
Q 045304 483 SYLELCRATDRFSE---------NNLIGRGGFGSVYKARIQD-----GMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 483 ~~~~l~~at~~f~~---------~~~ig~G~~G~Vykg~l~~-----g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
...+..+++..|.. .+.||+|+||.||+|+... +..||||++...... ...+|..|+
T Consensus 26 ~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 97 (333)
T 1mqb_A 26 MGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEA 97 (333)
T ss_dssp ------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445555555554 5789999999999998743 236999999754322 234576665
No 221
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=96.47 E-value=0.0011 Score=63.85 Aligned_cols=48 Identities=31% Similarity=0.442 Sum_probs=36.1
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCc---chhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGA---FKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~---~~~F~~E~ 539 (540)
+.|...+.||+|+||.||+|+- .+|+.||||++....... .++|.+|+
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~ 105 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEV 105 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHH
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHH
Confidence 3467778899999999999986 578999999996543222 24566665
No 222
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=96.47 E-value=0.00083 Score=69.12 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=36.1
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||+||+|+- .+|+.||||++........+.+.+|+
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei 205 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEI 205 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHH
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHH
Confidence 3566667899999999999987 56899999999654433344566665
No 223
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=96.46 E-value=0.0014 Score=61.11 Aligned_cols=47 Identities=11% Similarity=-0.055 Sum_probs=34.7
Q ss_pred cCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCc---chhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGA---FKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~---~~~F~~E~ 539 (540)
.|.-...||+|+||.||+|.-.. |+.||||++....... .+.|..|+
T Consensus 32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~ 82 (286)
T 3uqc_A 32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRT 82 (286)
T ss_dssp TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHH
T ss_pred cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHH
Confidence 35556789999999999999854 8999999997543221 24566664
No 224
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=96.45 E-value=0.0018 Score=62.74 Aligned_cols=42 Identities=24% Similarity=0.383 Sum_probs=34.6
Q ss_pred HHHHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304 487 LCRATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC 528 (540)
Q Consensus 487 l~~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~ 528 (540)
.....+.|...+.||+|+||.||+|+.. +|+.||||++....
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~ 131 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTA 131 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTS
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccc
Confidence 3445567888899999999999999985 69999999996543
No 225
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=96.45 E-value=0.00037 Score=67.45 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=38.1
Q ss_pred cccccHHHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 479 WRRFSYLELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 479 ~~~~~~~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
...+++.+-....+.|.-.+.||+|+||.||+|+. .+|+.||||++..
T Consensus 22 ~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 70 (360)
T 3llt_A 22 IVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN 70 (360)
T ss_dssp GGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred ceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc
Confidence 34455555555667888889999999999999998 5688999999963
No 226
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=96.45 E-value=0.0016 Score=62.59 Aligned_cols=48 Identities=31% Similarity=0.443 Sum_probs=35.4
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
+.|...+.||+|+||.||+|+. .+|+.||||++..... .....|.+|+
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~ 67 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREI 67 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHH
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHH
Confidence 4566678899999999999998 5789999999954432 2234455664
No 227
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=96.44 E-value=0.0011 Score=64.42 Aligned_cols=48 Identities=27% Similarity=0.471 Sum_probs=34.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec------CCCEEEEEEecccc-CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
++|.-...||+|+||+||+|+.. +++.||||++.... .+...+|..|+
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 125 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEA 125 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHH
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHH
Confidence 34556678999999999999963 45689999996433 22234576664
No 228
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=96.44 E-value=0.0013 Score=63.28 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=31.1
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.+.|.-...||+|+||.||+|+.. +|+.||||++.... ..+.|..|+
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~ 99 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEI 99 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------C
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHH
Confidence 455777789999999999999985 47899999996532 234455554
No 229
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=96.42 E-value=0.00091 Score=64.09 Aligned_cols=50 Identities=30% Similarity=0.391 Sum_probs=37.4
Q ss_pred HhccCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccCC-cchhhhhhc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
..++|.-.+.||+|+||.||+|+.. +|+.||||++...... ..++|.+|+
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 101 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREA 101 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHH
Confidence 4567777889999999999999985 3478999999754322 234577765
No 230
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=96.40 E-value=0.001 Score=63.35 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=36.3
Q ss_pred hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
.++|.-.+.||+|+||.||+|+- .+|+.||||++..... ...+.+.+|+
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~ 65 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREV 65 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHH
Confidence 34566678899999999999987 6799999999965432 1234466664
No 231
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=96.40 E-value=0.0014 Score=61.45 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=27.6
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
++|.-.+.||+|+||.||+|+- .+|+.||||++...
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~ 49 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKK 49 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehh
Confidence 3456668899999999999986 46889999999643
No 232
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=96.38 E-value=0.00084 Score=64.09 Aligned_cols=47 Identities=26% Similarity=0.346 Sum_probs=35.2
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.|.-...||+|+||.||+|+. .+|+.||||++........+.|..|+
T Consensus 29 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~ 76 (337)
T 3ll6_A 29 RLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEV 76 (337)
T ss_dssp EEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHH
Confidence 455668899999999999996 46899999999554433344566554
No 233
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=96.38 E-value=0.001 Score=63.50 Aligned_cols=48 Identities=25% Similarity=0.444 Sum_probs=33.4
Q ss_pred ccCCccCeeccCCCCcEEEEEe--------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI--------QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l--------~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|.. .+|+.||||++..... ...++|..|+
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 91 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM 91 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHH
Confidence 4556668899999999999987 3578899999965432 2234566664
No 234
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=96.37 E-value=0.0012 Score=63.59 Aligned_cols=35 Identities=29% Similarity=0.548 Sum_probs=30.1
Q ss_pred ccCCccCeeccCCCCcEEEEEe----cCCCEEEEEEecc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~ 526 (540)
++|...+.||+|+||.||+|+. .+|+.||||++..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~ 92 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK 92 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeH
Confidence 4567778999999999999998 4689999999964
No 235
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=96.32 E-value=0.0017 Score=60.32 Aligned_cols=48 Identities=25% Similarity=0.383 Sum_probs=36.3
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
+.|.-.+.||+|+||.||+|.- .+|..||||++..... ...+.|.+|+
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~ 71 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEI 71 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHH
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHH
Confidence 3466678899999999999987 4588999999965442 2345576665
No 236
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=96.32 E-value=0.0011 Score=63.61 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=30.2
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
++|.-...||+|+||.||+|.. +|+.||||++...
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~ 65 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKS 65 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHH
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecc
Confidence 4566678899999999999999 8999999999643
No 237
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=96.32 E-value=0.0015 Score=62.27 Aligned_cols=36 Identities=31% Similarity=0.624 Sum_probs=30.5
Q ss_pred ccCCccCeeccCCCCcEEEEEe----cCCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI----QDGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l----~~g~~vAVK~l~~~ 527 (540)
++|.-.+.||+|+||.||+|.. .+|+.||||++...
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~ 56 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKA 56 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHH
Confidence 4566678899999999999987 47899999999643
No 238
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=96.31 E-value=0.00045 Score=65.61 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=38.1
Q ss_pred HHHHhccCCccCeeccCCCCcEEEEEec------CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 487 LCRATDRFSENNLIGRGGFGSVYKARIQ------DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 487 l~~at~~f~~~~~ig~G~~G~Vykg~l~------~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
...+.+.|.-.+.||+|+||.||+|+.. +++.||||++..... ....+|.+|+
T Consensus 20 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 79 (322)
T 1p4o_A 20 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEA 79 (322)
T ss_dssp TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred hcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHH
Confidence 3345566777889999999999999874 368899999964432 2234566665
No 239
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=96.30 E-value=0.0016 Score=67.73 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=32.2
Q ss_pred eeccCCCCcEEEEEec---CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 499 LIGRGGFGSVYKARIQ---DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 499 ~ig~G~~G~Vykg~l~---~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
.||+|+||.||+|+.. ++..||||++..... ...++|.+|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~ 387 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 387 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHH
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHH
Confidence 6999999999999884 466899999976542 3356688876
No 240
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=96.30 E-value=0.001 Score=62.85 Aligned_cols=48 Identities=29% Similarity=0.414 Sum_probs=35.2
Q ss_pred ccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|+. .+|+.||||++..... ...+.|..|+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 77 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSEL 77 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHH
Confidence 4556668899999999999985 3568999999975432 2234576665
No 241
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=96.30 E-value=0.0013 Score=61.60 Aligned_cols=46 Identities=26% Similarity=0.374 Sum_probs=32.5
Q ss_pred CCccCeeccCCCCcEEEEEe-----cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARI-----QDGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l-----~~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
|.....||+|+||.||+|++ .+|+.||||++.... ....+.|.+|+
T Consensus 23 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 74 (302)
T 4e5w_A 23 LKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEI 74 (302)
T ss_dssp EEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHH
T ss_pred hhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHH
Confidence 44557899999999999995 468899999997443 22235566665
No 242
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=96.30 E-value=0.001 Score=63.20 Aligned_cols=49 Identities=31% Similarity=0.569 Sum_probs=31.1
Q ss_pred hccCCccCeeccCCCCcEEEEEecCC----CEEEEEEecccc--CCcchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQDG----MEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~g----~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
.+.|.-.+.||+|+||.||+|+.... ..||||++.... ....++|..|+
T Consensus 22 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~ 76 (323)
T 3qup_A 22 EQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREA 76 (323)
T ss_dssp ---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHH
T ss_pred hhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHH
Confidence 45677778999999999999998543 279999996542 22345577765
No 243
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=96.29 E-value=0.0017 Score=62.13 Aligned_cols=36 Identities=33% Similarity=0.444 Sum_probs=30.3
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
++|.....||+|+||.||+|+. .+|+.||||++...
T Consensus 51 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~ 87 (340)
T 3an0_A 51 DDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRAT 87 (340)
T ss_dssp SCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred hheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccc
Confidence 4566667899999999999996 57899999999654
No 244
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=96.29 E-value=0.0014 Score=62.82 Aligned_cols=53 Identities=21% Similarity=0.293 Sum_probs=39.3
Q ss_pred HHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc-----CCcchhhhhhc
Q 045304 487 LCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC-----SGAFKSFDVEC 539 (540)
Q Consensus 487 l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~-----~~~~~~F~~E~ 539 (540)
+....+.|.-.+.||+|+||.||+|+. .+|..||||++.... ....+.|..|+
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~ 79 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEV 79 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHH
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHH
Confidence 445566788889999999999999987 467899999985431 22345576665
No 245
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=96.25 E-value=0.00089 Score=63.30 Aligned_cols=54 Identities=26% Similarity=0.341 Sum_probs=38.5
Q ss_pred HHHHHhccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304 486 ELCRATDRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 486 ~l~~at~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+.....++|.-.+.||+|+||+||+|+. .+|+.||||++...... ..+.|..|+
T Consensus 21 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 81 (316)
T 2xir_A 21 KWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSEL 81 (316)
T ss_dssp HHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred ceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHH
Confidence 3334456777788999999999999985 35689999999654322 234566665
No 246
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=96.25 E-value=0.0012 Score=62.46 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=33.1
Q ss_pred CccCeeccCCCCcEEEEEec-----CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 495 SENNLIGRGGFGSVYKARIQ-----DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 495 ~~~~~ig~G~~G~Vykg~l~-----~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
.....||+|+||.||+|.+. +|+.||||++..... +..+.|.+|+
T Consensus 34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 84 (318)
T 3lxp_A 34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEI 84 (318)
T ss_dssp EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHH
Confidence 44577999999999999863 578999999975432 2234576665
No 247
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=96.25 E-value=0.0017 Score=60.46 Aligned_cols=48 Identities=23% Similarity=0.387 Sum_probs=36.6
Q ss_pred hccCCccCeeccCCCCcEEEEEecC-CCEEEEEEeccccCCcchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.++|.-...||+|+||.||+|+..+ |..||||++.... ...++|..|+
T Consensus 12 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~ 60 (288)
T 3kfa_A 12 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEA 60 (288)
T ss_dssp GGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHH
T ss_pred ccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHH
Confidence 4556667889999999999999864 7899999996533 2345576665
No 248
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=96.24 E-value=0.0015 Score=62.68 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=34.6
Q ss_pred hccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
.++|.-.+.||+|+||.||+|+. .++..||||++.... ....+.|..|+
T Consensus 44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 99 (344)
T 1rjb_A 44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSEL 99 (344)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHH
T ss_pred HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHH
Confidence 45677778999999999999996 345689999996443 22345576665
No 249
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=96.23 E-value=0.002 Score=59.67 Aligned_cols=45 Identities=29% Similarity=0.427 Sum_probs=34.0
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|... |+.||||++.... ..+.|.+|+
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~ 65 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEA 65 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCCC----HHHHHTH
T ss_pred hhceEEeEEecCCCceEEEEEEc-CCEEEEEEecchh--HHHHHHHHH
Confidence 34556688999999999999985 8999999996433 345576665
No 250
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=96.23 E-value=0.0024 Score=60.18 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=35.0
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCc---chhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGA---FKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~---~~~F~~E~ 539 (540)
.|.-.+.||+|+||.||+|+- .+|+.||||++....... .+.|.+|+
T Consensus 13 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~ 63 (311)
T 3ork_A 13 RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREA 63 (311)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHH
T ss_pred cEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHH
Confidence 455568899999999999995 678999999996543222 23466665
No 251
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=96.22 E-value=0.0026 Score=59.63 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=35.8
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
+.|...+.||+|+||.||+|+- .+|+.||||++.... ....+.|..|+
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~ 71 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEI 71 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHH
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHH
Confidence 3466678899999999999986 468999999996543 22345566665
No 252
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=96.22 E-value=0.0017 Score=61.20 Aligned_cols=48 Identities=33% Similarity=0.416 Sum_probs=33.7
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC---Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS---GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~---~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|.. .+|+.||||++..... ...++|.+|+
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~ 83 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEI 83 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHH
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHH
Confidence 3566678899999999999986 5789999999964321 1234566665
No 253
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=96.22 E-value=0.0035 Score=60.46 Aligned_cols=43 Identities=30% Similarity=0.470 Sum_probs=26.3
Q ss_pred HHHHHHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 485 LELCRATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 485 ~~l~~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
.+.....++|.-.+.||+|+||.||+|+. .+|+.||||++...
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 59 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD 59 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC
Confidence 34566778899999999999999999998 46899999999543
No 254
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.21 E-value=0.0094 Score=47.76 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=4.8
Q ss_pred EeeCCCCCCC
Q 045304 262 TLSLGSNELT 271 (540)
Q Consensus 262 ~L~l~~n~l~ 271 (540)
.++.+++.++
T Consensus 12 ~v~Cs~~~L~ 21 (130)
T 3rfe_A 12 LVDCGRRGLT 21 (130)
T ss_dssp EEECCSSCCC
T ss_pred EEEeCCCCCc
Confidence 4444455544
No 255
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=96.20 E-value=0.0012 Score=64.32 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=34.0
Q ss_pred ccCCccCeeccCCCCcEEEEEe--------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI--------QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l--------~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
+.|.-.+.||+|+||.||+|+. .++..||||++..... ...++|.+|+
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 125 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEM 125 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHH
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHH
Confidence 3455567899999999999986 2346899999965432 2235566665
No 256
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=96.18 E-value=0.0028 Score=62.68 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=31.1
Q ss_pred HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
..+.|.-.+.||+|+||.||+|.. .+|+.||||++..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~ 170 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISK 170 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEG
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEe
Confidence 456677788999999999999987 4578999999964
No 257
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=96.17 E-value=0.0017 Score=61.60 Aligned_cols=37 Identities=35% Similarity=0.617 Sum_probs=30.5
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC 528 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~ 528 (540)
+.|.-...||+|+||.||+|+. .+|+.||||++....
T Consensus 43 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~ 80 (320)
T 3a99_A 43 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDR 80 (320)
T ss_dssp TTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGG
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEeccc
Confidence 4566678899999999999985 568899999996543
No 258
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=96.16 E-value=0.0018 Score=61.71 Aligned_cols=50 Identities=28% Similarity=0.347 Sum_probs=34.5
Q ss_pred HhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
..+.|.-...||+|+||+||+|+- .+|+.||||++...... ..+.|..|+
T Consensus 32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~ 84 (329)
T 3gbz_A 32 SIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREV 84 (329)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHH
T ss_pred chhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHH
Confidence 345677788999999999999985 46889999999644321 234455554
No 259
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=96.15 E-value=0.0026 Score=61.41 Aligned_cols=48 Identities=27% Similarity=0.366 Sum_probs=35.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC------cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG------AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~------~~~~F~~E~ 539 (540)
+.|.-.+.||+|+||.||+|+-. +|+.||||++...... ..+.|.+|+
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~ 66 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREV 66 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHH
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHH
Confidence 44666688999999999999874 5899999999654321 124566665
No 260
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=96.14 E-value=0.0012 Score=62.95 Aligned_cols=48 Identities=31% Similarity=0.473 Sum_probs=30.0
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCE----EEEEEecccc-CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGME----VAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~----vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
++|...+.||+|+||+||+|+. .+|+. ||||++.... ....++|.+|+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 68 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHH
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHH
Confidence 3466778999999999999996 34543 6888886433 23346677775
No 261
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=96.14 E-value=0.0023 Score=62.16 Aligned_cols=45 Identities=38% Similarity=0.592 Sum_probs=32.3
Q ss_pred ccCeeccCCCCcEEEEEecC--C--CEEEEEEeccccC-CcchhhhhhcC
Q 045304 496 ENNLIGRGGFGSVYKARIQD--G--MEVAVKVFHLHCS-GAFKSFDVECN 540 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l~~--g--~~vAVK~l~~~~~-~~~~~F~~E~~ 540 (540)
-.+.||+|+||.||+|+..+ + ..||||++..... ...++|..|++
T Consensus 93 ~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~ 142 (373)
T 3c1x_A 93 FNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGI 142 (373)
T ss_dssp EEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHT
T ss_pred cCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999742 2 3689999965332 23456777763
No 262
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=96.14 E-value=0.0019 Score=61.72 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=30.9
Q ss_pred hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
.+.|.....||+|+||.||+|+- .+|+.||||++...
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~ 60 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKE 60 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEEST
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehh
Confidence 44567778899999999999985 56889999999654
No 263
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=96.14 E-value=0.0022 Score=60.93 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=29.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
++|.....||+|+||.||+|... +|+.||||++...
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~ 58 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRST 58 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecc
Confidence 34556688999999999999984 6899999999654
No 264
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=96.14 E-value=0.0019 Score=67.54 Aligned_cols=42 Identities=29% Similarity=0.339 Sum_probs=31.8
Q ss_pred CeeccCCCCcEEEEEec---CCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQ---DGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~---~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
+.||+|+||.||+|.+. .++.||||++..... ...++|.+|+
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~ 421 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEA 421 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHH
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHH
Confidence 57999999999999773 457899999975432 2245687775
No 265
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=96.14 E-value=0.0028 Score=60.37 Aligned_cols=47 Identities=30% Similarity=0.377 Sum_probs=34.0
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCc--chhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGA--FKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~--~~~F~~E~ 539 (540)
.|.....||+|+||.||+|+.. +|+.||||++....... .+.|.+|+
T Consensus 26 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~ 75 (331)
T 4aaa_A 26 KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREI 75 (331)
T ss_dssp GEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHH
T ss_pred hheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHH
Confidence 4555678999999999999985 48999999996543221 23455554
No 266
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=96.14 E-value=0.0019 Score=62.00 Aligned_cols=38 Identities=24% Similarity=0.490 Sum_probs=31.5
Q ss_pred HHhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 489 RATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 489 ~at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
...++|.-.++||+|+||.||+|+.. +|+.||||++..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~ 52 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKK 52 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEH
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEh
Confidence 34567888899999999999999984 588999999964
No 267
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=96.13 E-value=0.0028 Score=58.48 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=25.6
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC---Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS---GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~---~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|+- .+|+.||||++..... ...+.|.+|+
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~ 64 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREI 64 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHH
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHH
Confidence 3566668899999999999986 5689999999964331 1234466654
No 268
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=96.12 E-value=0.0018 Score=63.20 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=35.9
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.|.-.+.||+|+||.||+|+.. +|+.||+|++..........|.+|+
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~ 99 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEI 99 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHH
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHH
Confidence 45666788999999999999874 6899999999654332334566665
No 269
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=96.11 E-value=0.0026 Score=60.46 Aligned_cols=45 Identities=24% Similarity=0.354 Sum_probs=34.2
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|+- .+|+.||||++.... .+.|..|+
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~ 81 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREI 81 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHH
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHH
Confidence 4456678899999999999985 678999999996432 34465554
No 270
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=96.10 E-value=0.0043 Score=59.90 Aligned_cols=46 Identities=26% Similarity=0.234 Sum_probs=34.3
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||+||+|.-. +|+.||||++..... ..+.+.+|+
T Consensus 21 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~ 67 (361)
T 3uc3_A 21 RYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREI 67 (361)
T ss_dssp TEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHH
T ss_pred cEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHH
Confidence 4555678999999999999985 689999999965432 234455554
No 271
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=96.10 E-value=0.0026 Score=62.60 Aligned_cols=41 Identities=32% Similarity=0.361 Sum_probs=25.9
Q ss_pred cCeeccCCCCcEEEEEec---CCCEEEEEEeccccCCcchhhhhhc
Q 045304 497 NNLIGRGGFGSVYKARIQ---DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~---~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
..+||+|+||.||+|+.. +|+.||||++.... ..+.+.+|+
T Consensus 26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~ 69 (405)
T 3rgf_A 26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREI 69 (405)
T ss_dssp SCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHH
T ss_pred CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHH
Confidence 457999999999999975 47899999996432 233455554
No 272
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=96.10 E-value=0.0021 Score=60.31 Aligned_cols=49 Identities=22% Similarity=0.269 Sum_probs=24.7
Q ss_pred hccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc-CCcchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
.++|.-.+.||+|+||.||+|.. .+|+.||||++.... ....++|.+|+
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~ 64 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEI 64 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC---------------
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHH
Confidence 34566678899999999999986 468999999986433 22345566665
No 273
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=96.08 E-value=0.0019 Score=64.77 Aligned_cols=48 Identities=29% Similarity=0.302 Sum_probs=27.1
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
+.|.-...||+|+||+||+|.- .+|+.||||++..... ...+.|.+|+
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~ 103 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREI 103 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHH
Confidence 4566778899999999999986 4689999999964322 1234566665
No 274
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=96.08 E-value=0.0025 Score=61.48 Aligned_cols=48 Identities=27% Similarity=0.371 Sum_probs=36.0
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC-cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
++|.....||+|+||.||+|... +|+.||||++...... ..+.|.+|+
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~ 82 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIREL 82 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHH
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHH
Confidence 45666788999999999999985 6899999999754322 234566665
No 275
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=96.07 E-value=0.0016 Score=61.44 Aligned_cols=48 Identities=27% Similarity=0.372 Sum_probs=34.5
Q ss_pred ccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|+. .+|+.||||++..... ...+.|..|+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 77 (314)
T 2ivs_A 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEF 77 (314)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHH
Confidence 4455667899999999999986 3458999999965432 2234566665
No 276
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=96.07 E-value=0.0021 Score=59.50 Aligned_cols=49 Identities=29% Similarity=0.501 Sum_probs=35.2
Q ss_pred hccCCccCeeccCCCCcEEEEEecC----CCEEEEEEeccccC-Ccchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
.++|.-.+.||+|+||.||+|+..+ +..||||++..... ...+.|.+|+
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 64 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEA 64 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHH
Confidence 3556677899999999999999743 23699999975432 2245577665
No 277
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=96.06 E-value=0.0021 Score=60.60 Aligned_cols=39 Identities=31% Similarity=0.620 Sum_probs=29.9
Q ss_pred HHhccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccc
Q 045304 489 RATDRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLH 527 (540)
Q Consensus 489 ~at~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~ 527 (540)
...++|.-.+.||+|+||.||+|+. .+|+.||||++...
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~ 67 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRN 67 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCST
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecc
Confidence 3456688889999999999999986 56889999999644
No 278
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=96.05 E-value=0.0035 Score=61.98 Aligned_cols=35 Identities=34% Similarity=0.673 Sum_probs=29.2
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
.|...++||+|+||.||+|+.. +|+.||||++...
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~ 90 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD 90 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc
Confidence 3555688999999999999985 5899999999643
No 279
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=96.04 E-value=0.0027 Score=61.55 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=29.0
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
+.|.....||+|+||.||+|+- .+|+.||||++...... ..+.+.+|+
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~ 75 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYREL 75 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHH
Confidence 4566678899999999999987 46899999999543211 134466664
No 280
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=96.02 E-value=0.0016 Score=63.19 Aligned_cols=48 Identities=29% Similarity=0.335 Sum_probs=30.9
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
+.|.....||+|+||.||+|.- .+|+.||||++..... ...+.+.+|+
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~ 79 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYREL 79 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHH
Confidence 4566678899999999999985 5689999999964321 1234455654
No 281
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=96.01 E-value=0.0024 Score=63.66 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=30.9
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
++|...+.||+|+||.||+|.- .+|+.||||++.... ....+.+..|+
T Consensus 148 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~ 199 (446)
T 4ejn_A 148 NEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTEN 199 (446)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC------------
T ss_pred HHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHH
Confidence 5677788999999999999986 568999999996431 22234455554
No 282
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=95.98 E-value=0.0028 Score=60.20 Aligned_cols=48 Identities=29% Similarity=0.482 Sum_probs=32.1
Q ss_pred ccCCccCeeccCCCCcEEEEEe------cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI------QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l------~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|+. .+|..||||++..... ....+|..|+
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 84 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEA 84 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHH
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHH
Confidence 4566678899999999999985 3467899999964332 2234566664
No 283
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=95.98 E-value=0.0031 Score=59.80 Aligned_cols=48 Identities=27% Similarity=0.370 Sum_probs=35.6
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC------cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG------AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~------~~~~F~~E~ 539 (540)
+.|.-.+.||+|+||.||+|+.. +|+.||||++...... ..++|.+|+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~ 66 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREV 66 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHH
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHH
Confidence 44666788999999999999974 5899999999654321 134576665
No 284
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=95.98 E-value=0.0023 Score=62.11 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=30.3
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC 528 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~ 528 (540)
.|...+.||+|+||.||+|+. .+|+.||||++....
T Consensus 63 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~ 99 (371)
T 3q60_A 63 KLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGA 99 (371)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCS
T ss_pred eeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecc
Confidence 455678899999999999996 478999999997644
No 285
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.97 E-value=0.0033 Score=64.97 Aligned_cols=35 Identities=43% Similarity=0.757 Sum_probs=30.6
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
++|.-..+||+|+||+||+|+- .+|+.||||++..
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K 224 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDK 224 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeH
Confidence 5687889999999999999987 4689999999953
No 286
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=95.95 E-value=0.0033 Score=61.40 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=30.5
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
++|.-.++||+|+||.||+|+.. +|+.||||++...
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~ 88 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKE 88 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGG
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhh
Confidence 46777789999999999999985 4789999999653
No 287
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=95.95 E-value=0.002 Score=60.20 Aligned_cols=45 Identities=27% Similarity=0.471 Sum_probs=31.7
Q ss_pred CccCeeccCCCCcEEEEEecC-C---CEEEEEEeccccC-Ccchhhhhhc
Q 045304 495 SENNLIGRGGFGSVYKARIQD-G---MEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 495 ~~~~~ig~G~~G~Vykg~l~~-g---~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
...++||+|+||+||+|+..+ + ..||||++..... ...+.|..|+
T Consensus 24 ~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~ 73 (298)
T 3pls_A 24 HSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREG 73 (298)
T ss_dssp EEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHH
T ss_pred ccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHH
Confidence 345789999999999998633 2 3799999965332 2235566665
No 288
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=95.95 E-value=0.0026 Score=61.51 Aligned_cols=48 Identities=23% Similarity=0.254 Sum_probs=35.5
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC-cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+.|.....||+|+||.||+|.- .+|+.||||++...... ..+.|.+|+
T Consensus 27 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 76 (364)
T 3qyz_A 27 PRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREI 76 (364)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred ccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHH
Confidence 4566678999999999999986 46789999999643322 234566665
No 289
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=95.94 E-value=0.0032 Score=57.56 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=26.5
Q ss_pred cCeeccCCCCcEEEEEe-cCCCE--EEEEEecc
Q 045304 497 NNLIGRGGFGSVYKARI-QDGME--VAVKVFHL 526 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l-~~g~~--vAVK~l~~ 526 (540)
...||+|+||.||+|.. .+|+. ||||++..
T Consensus 52 ~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~ 84 (258)
T 1zth_A 52 GGVISTGKEANVFYADGVFDGKPVAMAVKIYRI 84 (258)
T ss_dssp EEEEEECSSEEEEEEEEEETTEEEEEEEEEECC
T ss_pred CCEEeecceEEEEEEEEcCCCcEeeEEEEEEEC
Confidence 46799999999999998 78999 99998754
No 290
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=95.94 E-value=0.0019 Score=62.10 Aligned_cols=36 Identities=39% Similarity=0.604 Sum_probs=30.5
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
.++|.-.++||+|+||.||+|+.. +|+.||||++..
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~ 58 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKK 58 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEH
Confidence 356777889999999999999874 589999999964
No 291
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=95.93 E-value=0.0029 Score=58.92 Aligned_cols=43 Identities=30% Similarity=0.332 Sum_probs=31.3
Q ss_pred cCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 497 NNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
...||+|+||+||+|.. .++..||||++..... ...+.|..|+
T Consensus 31 ~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~ 76 (290)
T 1t4h_A 31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEA 76 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred eeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHH
Confidence 35799999999999987 4578999999965432 1234466664
No 292
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=95.91 E-value=0.0038 Score=59.63 Aligned_cols=37 Identities=35% Similarity=0.615 Sum_probs=31.6
Q ss_pred HHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 489 RATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 489 ~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
...+.|.-...||+|+||.||+|+. +|+.||||++..
T Consensus 39 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~ 75 (342)
T 1b6c_B 39 TIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS 75 (342)
T ss_dssp HHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG
T ss_pred cccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc
Confidence 3445788889999999999999998 589999999954
No 293
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=95.91 E-value=0.002 Score=62.75 Aligned_cols=37 Identities=38% Similarity=0.559 Sum_probs=31.2
Q ss_pred HhccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
..++|...+.||+|+||+||+|... +|+.||||++..
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~ 89 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN 89 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec
Confidence 3566777889999999999999874 678999999964
No 294
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=95.90 E-value=0.0047 Score=59.88 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=30.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
++|.-.++||+|+||.||+|+.. +|+.||||++...
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~ 74 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKK 74 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGG
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHH
Confidence 45777789999999999999985 5789999999644
No 295
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=95.90 E-value=0.003 Score=58.72 Aligned_cols=48 Identities=27% Similarity=0.416 Sum_probs=36.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc--CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
+.|.-...||+|+||.||+|+.. +|+.||||++.... ....+.|.+|+
T Consensus 22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~ 72 (287)
T 2wei_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREV 72 (287)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHH
T ss_pred hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHH
Confidence 45777789999999999999985 68999999996433 22344566665
No 296
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=95.88 E-value=0.0032 Score=60.46 Aligned_cols=35 Identities=29% Similarity=0.557 Sum_probs=29.9
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
++|.....||+|+||.||+|+.. +|+.||||++..
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~ 76 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDK 76 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEh
Confidence 45666788999999999999974 689999999954
No 297
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=95.87 E-value=0.0032 Score=64.14 Aligned_cols=48 Identities=29% Similarity=0.520 Sum_probs=35.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
++|...++||+|+||.||+|+.. +|+.||||++.... ....+.|..|+
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~ 236 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEK 236 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHH
Confidence 45777788999999999999984 58999999995432 12234455554
No 298
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=95.87 E-value=0.0035 Score=60.82 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=34.9
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
+.|.....||+|+||.||+|.- .+|+.||||++...... ..+.|.+|+
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~ 92 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYREL 92 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHH
Confidence 4566678899999999999986 46899999999653322 134465554
No 299
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=95.86 E-value=0.0036 Score=59.48 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=31.7
Q ss_pred CeeccCCCCcEEEEEec-CCCEEEEEEeccccCC--cchhhhhhc
Q 045304 498 NLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
+.||+|+||.||+|+.. +|+.||||++...... ..++|..|+
T Consensus 35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~ 79 (327)
T 3lm5_A 35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEI 79 (327)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHH
T ss_pred ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHH
Confidence 67999999999999875 5899999999654322 234566654
No 300
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=95.85 E-value=0.0041 Score=58.64 Aligned_cols=47 Identities=30% Similarity=0.445 Sum_probs=31.1
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCcchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.+.|...+.||+|+||.||+|+.. +|+.||||++.... ..++|..|+
T Consensus 28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~ 75 (314)
T 3com_A 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEI 75 (314)
T ss_dssp --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHH
T ss_pred hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHH
Confidence 455777789999999999999985 48999999996533 234566654
No 301
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=95.85 E-value=0.0037 Score=59.60 Aligned_cols=35 Identities=49% Similarity=0.789 Sum_probs=29.4
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
++|.-...||+|+||.||+|+. +|+.||||++...
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~ 47 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA 47 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG
T ss_pred HHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc
Confidence 3555668899999999999988 6899999998643
No 302
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=95.85 E-value=0.002 Score=63.13 Aligned_cols=47 Identities=23% Similarity=0.155 Sum_probs=34.1
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.|.-...||+|+||+||+|+- .+|+.||||++.... ...+.+.+|+
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~ 84 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEI 84 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHH
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHH
Confidence 4466678899999999999985 568899999996432 1234455554
No 303
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=95.84 E-value=0.0036 Score=60.92 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=34.5
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|... +|+.||||++.... ....+.+.+|+
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~ 66 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKEL 66 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHH
Confidence 34666788999999999999874 57899999995432 22234455554
No 304
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=95.84 E-value=0.0023 Score=63.53 Aligned_cols=48 Identities=31% Similarity=0.359 Sum_probs=35.4
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|+- .+|+.||||++..... ...+.|.+|+
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~ 76 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREI 76 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHH
T ss_pred CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHH
Confidence 4566678899999999999987 4578999999964322 1234566665
No 305
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=95.84 E-value=0.0036 Score=60.20 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=34.7
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
+.|.....||+|+||.||+|+- .+|+.||||++...... ..+.|.+|+
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~ 74 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYREL 74 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHH
Confidence 3455668899999999999987 46899999999643321 124455554
No 306
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=95.84 E-value=0.0022 Score=59.81 Aligned_cols=45 Identities=31% Similarity=0.604 Sum_probs=32.8
Q ss_pred cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
.|.-...||+|+||.||+|+.. ..||||++...... ..+.|.+|+
T Consensus 25 ~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~ 71 (289)
T 3og7_A 25 QITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEV 71 (289)
T ss_dssp SCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHH
T ss_pred ceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHH
Confidence 4555678999999999999875 36999999654322 235577775
No 307
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=95.83 E-value=0.0029 Score=58.63 Aligned_cols=48 Identities=27% Similarity=0.361 Sum_probs=33.8
Q ss_pred ccCCccCeeccCCCCcEEEEEecC----CCEEEEEEeccccCC-cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+.|.-...||+|+||.||+|.... +..||||++...... ..+.|..|+
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~ 67 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEA 67 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHH
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHH
Confidence 345556789999999999999843 457999999653322 234566664
No 308
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=95.82 E-value=0.0032 Score=59.40 Aligned_cols=49 Identities=29% Similarity=0.516 Sum_probs=32.2
Q ss_pred hccCCccCeeccCCCCcEEEEEecC----CCEEEEEEeccccCC--cchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
.+.|.-.+.||+|+||.||+|.... ++.||||++...... ..+.|..|+
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~ 87 (313)
T 3brb_A 33 RNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEA 87 (313)
T ss_dssp GGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHH
T ss_pred HHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHH
Confidence 4556667889999999999998742 458999999654322 234566664
No 309
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=95.82 E-value=0.0026 Score=61.20 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=27.7
Q ss_pred ccCCccCeeccCCCCcEEEEEecC---------CCEEEEEEecc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQD---------GMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~---------g~~vAVK~l~~ 526 (540)
++|.-.+.||+|+||.||+|+... |+.||||++..
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~ 85 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAK 85 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEET
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecc
Confidence 356666889999999999999863 88999999964
No 310
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=95.81 E-value=0.0022 Score=61.76 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=30.8
Q ss_pred hccCCccCeeccCCCCcEEEEEecC-CCEEEEEEecc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQD-GMEVAVKVFHL 526 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~-g~~vAVK~l~~ 526 (540)
.++|.-..+||+|+||.||+|+..+ |+.||||++..
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~ 55 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKK 55 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEH
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH
Confidence 3567778899999999999999854 78999999964
No 311
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=95.81 E-value=0.0038 Score=58.77 Aligned_cols=48 Identities=29% Similarity=0.425 Sum_probs=35.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCCc---chhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSGA---FKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~~---~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|... +|+.||||++....... .+.|..|+
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~ 85 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREA 85 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHH
Confidence 45666788999999999999974 68899999996543211 24466664
No 312
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=95.76 E-value=0.0029 Score=61.15 Aligned_cols=49 Identities=22% Similarity=0.483 Sum_probs=36.6
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccCC--cchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
.++|.-.+.||+|+||.||+|+.. +|+.||||++...... ..+.|.+|+
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~ 79 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREA 79 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHH
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHH
Confidence 456777889999999999999874 5899999999654321 234466665
No 313
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=95.76 E-value=0.0031 Score=63.17 Aligned_cols=48 Identities=25% Similarity=0.153 Sum_probs=34.9
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc--CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
+.|...+.||+|+||+||+|.- .+|+.||||++.... ....+.+.+|+
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~ 112 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYREL 112 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHH
T ss_pred CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHH
Confidence 4566678899999999999975 468899999996432 12234466664
No 314
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=95.76 E-value=0.0027 Score=62.99 Aligned_cols=34 Identities=35% Similarity=0.496 Sum_probs=28.7
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
.|.-.+.||+|+||.||+|.-. +|+.||||++..
T Consensus 98 ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~ 132 (429)
T 3kvw_A 98 RYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN 132 (429)
T ss_dssp TEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS
T ss_pred cEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC
Confidence 4566688999999999999874 478999999964
No 315
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=95.74 E-value=0.0033 Score=64.35 Aligned_cols=36 Identities=28% Similarity=0.610 Sum_probs=31.0
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
.++|...++||+|+||.||+|... +|+.||||++..
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k 219 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEK 219 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEh
Confidence 356777889999999999999984 689999999954
No 316
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=95.66 E-value=0.0062 Score=57.77 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=31.5
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCE----EEEEEecccc-CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGME----VAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~----vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
+|.....||+|+||.||+|+. .+|+. ||||++.... .+..+.|..|+
T Consensus 14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~ 66 (325)
T 3kex_A 14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHM 66 (325)
T ss_dssp TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHH
T ss_pred HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHH
Confidence 344567899999999999986 34544 8888885433 22334455553
No 317
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=95.66 E-value=0.0033 Score=59.96 Aligned_cols=36 Identities=33% Similarity=0.602 Sum_probs=31.1
Q ss_pred HhccCCccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
..+.|.-.+.||+|+||.||+|+.. |+.||||++..
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~ 70 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFT 70 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEG
T ss_pred cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEec
Confidence 3456778899999999999999985 89999999954
No 318
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=95.64 E-value=0.0035 Score=58.61 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=30.9
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
.++|.....||+|+||.||+|... +|+.||||++...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 53 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVT 53 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecc
Confidence 345667788999999999999984 5889999999643
No 319
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=95.63 E-value=0.0033 Score=58.57 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=28.8
Q ss_pred eeccCCCCcEEEEEec---CCCEEEEEEeccccC--Ccchhhhhhc
Q 045304 499 LIGRGGFGSVYKARIQ---DGMEVAVKVFHLHCS--GAFKSFDVEC 539 (540)
Q Consensus 499 ~ig~G~~G~Vykg~l~---~g~~vAVK~l~~~~~--~~~~~F~~E~ 539 (540)
.||+|+||.||+|... +++.||||++..... ...++|.+|+
T Consensus 24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~ 69 (291)
T 1xbb_A 24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEA 69 (291)
T ss_dssp EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHH
T ss_pred ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHH
Confidence 8999999999999763 367899999965432 1235577765
No 320
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=95.61 E-value=0.0058 Score=60.65 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=26.1
Q ss_pred ccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 496 ENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
.+++||+|+||+||.+...+|+.||||++..
T Consensus 19 ~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~ 49 (434)
T 2rio_A 19 SEKILGYGSSGTVVFQGSFQGRPVAVKRMLI 49 (434)
T ss_dssp EEEEEEECSTTCEEEEEESSSSEEEEEEEEG
T ss_pred ccCeEeeCCCeEEEEEEEECCeEEEEEEEcH
Confidence 4578999999999766666899999999954
No 321
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=95.60 E-value=0.004 Score=61.72 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=28.8
Q ss_pred hccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
...|...++||+|+||+||.....+|+.||||++...
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~ 59 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPE 59 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTT
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHH
Confidence 3457788899999999955444457999999999643
No 322
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=95.60 E-value=0.0048 Score=58.22 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=24.5
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
++|.....||+|+||.||+|... +|+.||||++...
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 61 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRS 61 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETT
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEeccc
Confidence 45666788999999999999985 6899999999654
No 323
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=95.59 E-value=0.005 Score=61.75 Aligned_cols=47 Identities=23% Similarity=0.364 Sum_probs=34.0
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
+|.-...||+|+||.||+|+.. +|+.||||++.... ....+.+.+|+
T Consensus 17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei 67 (476)
T 2y94_A 17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREI 67 (476)
T ss_dssp TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHH
T ss_pred CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHH
Confidence 3445578999999999999974 68999999996432 12234466664
No 324
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=95.58 E-value=0.0053 Score=59.00 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=34.4
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecccc-----CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHC-----SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~-----~~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||+||+|+- .+|+.||||++.... ....+.|.+|+
T Consensus 25 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~ 77 (351)
T 3c0i_A 25 VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREA 77 (351)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHH
T ss_pred ceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHH
Confidence 455668899999999999987 468999999985321 11234576665
No 325
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=95.57 E-value=0.0069 Score=58.33 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=28.1
Q ss_pred CccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 495 SENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 495 ~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
.-...||+|+||.||+|.-++|+.||||.++.
T Consensus 98 ~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~ 129 (397)
T 4gyi_A 98 SVGSRIGVGKESDIMIVADEKGKQKVLKIHRL 129 (397)
T ss_dssp EEEEEEEECSSEEEEEEECTTCCEEEEEEECT
T ss_pred EecCEeeeCCceEEEEEECCCCCEEEEEEEec
Confidence 34567999999999999999999999998854
No 326
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=95.57 E-value=0.0033 Score=58.73 Aligned_cols=46 Identities=35% Similarity=0.554 Sum_probs=31.4
Q ss_pred CCccCeeccCCCCcEEEEEecCC----CEEEEEEeccccC-Ccchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARIQDG----MEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~~g----~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
|.-.+.||+|+||+||+|+..+. ..||||++..... ...+.|..|+
T Consensus 27 y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~ 77 (298)
T 3f66_A 27 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEG 77 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHH
T ss_pred hhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHH
Confidence 34457899999999999997432 3689999965332 2234566664
No 327
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=95.51 E-value=0.004 Score=60.17 Aligned_cols=38 Identities=32% Similarity=0.482 Sum_probs=29.9
Q ss_pred HhccCCccCeeccCCCCcEEEEEecC------CCEEEEEEeccc
Q 045304 490 ATDRFSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLH 527 (540)
Q Consensus 490 at~~f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~ 527 (540)
.+++|.-.+.||+|+||.||+|...+ ++.||||++...
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 76 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSD 76 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETT
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeecc
Confidence 34567777899999999999999865 478999998644
No 328
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=95.48 E-value=0.004 Score=59.32 Aligned_cols=46 Identities=26% Similarity=0.326 Sum_probs=32.9
Q ss_pred cCCccCeeccCCCCcEEEEEe--cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARI--QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l--~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.|.-...||+|+||.||+|.- .+|+.||||++.... ...+.+..|+
T Consensus 15 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~ 62 (339)
T 1z57_A 15 RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEI 62 (339)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHH
T ss_pred ceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHH
Confidence 455567899999999999986 468899999996432 1223455543
No 329
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=95.48 E-value=0.0043 Score=59.07 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=35.4
Q ss_pred hccCCccCeeccCCCCcEEEEEecC------CCEEEEEEeccccC-Ccchhhhhhc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQD------GMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~~------g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
.++|.-.+.||+|+||.||+|+... +..||||++..... ...+.|..|+
T Consensus 45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~ 100 (333)
T 2i1m_A 45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSEL 100 (333)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHH
Confidence 4567777899999999999999732 24799999965432 2234566665
No 330
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=95.46 E-value=0.0061 Score=59.06 Aligned_cols=48 Identities=25% Similarity=0.155 Sum_probs=34.8
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
+.|.....||+|+||.||+|.- .+|+.||||++...... ..+.|.+|+
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~ 75 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYREL 75 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHH
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHH
Confidence 4566678899999999999986 46889999999643221 234465654
No 331
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=95.45 E-value=0.0093 Score=56.25 Aligned_cols=46 Identities=33% Similarity=0.675 Sum_probs=33.3
Q ss_pred ccCCccCeeccCCCCcEEEEEecCCCEEEEEEecccc--CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|...+ .||||++.... ....+.|..|+
T Consensus 33 ~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~ 80 (319)
T 2y4i_B 33 EQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREV 80 (319)
T ss_dssp SCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTG
T ss_pred HHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHH
Confidence 455667889999999999999853 49999996432 22235566665
No 332
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=95.45 E-value=0.0052 Score=62.05 Aligned_cols=47 Identities=28% Similarity=0.405 Sum_probs=34.8
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc--CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
.|.-...||+|+||+||+|+-. +|+.||||++.... ....+.|.+|+
T Consensus 23 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~ 72 (486)
T 3mwu_A 23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREV 72 (486)
T ss_dssp HEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHH
T ss_pred ceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHH
Confidence 4556688999999999999874 68999999995322 22344566665
No 333
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=95.42 E-value=0.0059 Score=61.57 Aligned_cols=47 Identities=30% Similarity=0.449 Sum_probs=35.0
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||.||+|+-. +|+.||||++.... ....+.|.+|+
T Consensus 27 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~ 77 (484)
T 3nyv_A 27 RYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREV 77 (484)
T ss_dssp HEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHH
T ss_pred ceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHH
Confidence 4555688999999999999875 68999999996433 22234566665
No 334
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=95.41 E-value=0.0049 Score=57.12 Aligned_cols=48 Identities=31% Similarity=0.489 Sum_probs=34.5
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|+.. +|+.||||++.... .+..+.|..|+
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~ 65 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREI 65 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHH
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHH
Confidence 35666788999999999999985 57789999995432 22234466554
No 335
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=95.38 E-value=0.0061 Score=64.13 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=30.8
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
.++|.-..+||+|+||.||+|+.. +|+.||||++..
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~ 376 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKK 376 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEH
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEec
Confidence 456777889999999999999974 578999999964
No 336
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=95.37 E-value=0.0045 Score=57.70 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=34.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC---Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS---GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~---~~~~~F~~E~ 539 (540)
+.|...+.||+|+||.||+|... +|+.||+|++..... ...+.|..|+
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~ 66 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEI 66 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHH
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHH
Confidence 34556688999999999999985 478999999864321 1234466664
No 337
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=95.36 E-value=0.0048 Score=58.63 Aligned_cols=48 Identities=31% Similarity=0.473 Sum_probs=33.5
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCE----EEEEEecccc-CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGME----VAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~----vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
++|...+.||+|+||.||+|.. .+|+. ||+|++.... ....++|..|+
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~ 68 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 68 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHH
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHH
Confidence 3466678899999999999986 34543 5888885433 33345677665
No 338
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=95.36 E-value=0.0065 Score=57.65 Aligned_cols=48 Identities=33% Similarity=0.572 Sum_probs=32.2
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCE--EEEEEecccc-CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGME--VAVKVFHLHC-SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~--vAVK~l~~~~-~~~~~~F~~E~ 539 (540)
++|.-...||+|+||.||+|+.. +|.. ||||++.... ....+.|..|+
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~ 76 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGEL 76 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHH
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHH
Confidence 34556688999999999999874 4554 5999996433 22345566665
No 339
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=95.34 E-value=0.0079 Score=57.51 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=31.0
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC 528 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~ 528 (540)
.++|.-...||+|+||.||+|+-. +|+.||||++....
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~ 59 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK 59 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc
Confidence 345666788999999999999874 58899999996543
No 340
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=95.33 E-value=0.0041 Score=57.82 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=26.8
Q ss_pred ccCCccCeeccCCCCcEEEEEec--CCC--EEEEEEecccc---CCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ--DGM--EVAVKVFHLHC---SGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~--~g~--~vAVK~l~~~~---~~~~~~F~~E~ 539 (540)
++|.-.+.||+|+||.||+|+.. +|+ .||||++.... ....+.|..|+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~ 72 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREV 72 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHH
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHH
Confidence 34556688999999999999863 333 68999996542 12235576665
No 341
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=95.32 E-value=0.0089 Score=56.99 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=28.7
Q ss_pred ccCCc-cCeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 492 DRFSE-NNLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 492 ~~f~~-~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
++|.- .++||+|+||+||+|... +|+.||||++..
T Consensus 28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 64 (336)
T 3fhr_A 28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYD 64 (336)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEES
T ss_pred ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecC
Confidence 44554 457999999999999985 689999999954
No 342
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.31 E-value=0.0047 Score=65.27 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=35.1
Q ss_pred ccCCccCeeccCCCCcEEEEEec--CCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ--DGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~--~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
+.|.-...||+|+||.||+|+.. +|+.||||++..... ...+.|..|+
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 130 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAER 130 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHH
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHH
Confidence 45666688999999999999985 589999999964322 2234466664
No 343
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=95.27 E-value=0.0075 Score=58.84 Aligned_cols=47 Identities=23% Similarity=0.309 Sum_probs=34.5
Q ss_pred cCCccCeeccC--CCCcEEEEEec-CCCEEEEEEeccccCC--cchhhhhhc
Q 045304 493 RFSENNLIGRG--GFGSVYKARIQ-DGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G--~~G~Vykg~l~-~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
.|.-...||+| +||.||+|+.. +|+.||||++...... ..+.|..|+
T Consensus 26 ~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~ 77 (389)
T 3gni_B 26 CYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGEL 77 (389)
T ss_dssp GEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHH
T ss_pred cEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHH
Confidence 45556789999 99999999985 6899999999654322 224455554
No 344
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=95.25 E-value=0.0051 Score=59.56 Aligned_cols=34 Identities=26% Similarity=0.400 Sum_probs=28.8
Q ss_pred cCCccCeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 493 RFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
.|.-...||+|+||.||+|+- .+|+.||||++..
T Consensus 20 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 54 (373)
T 1q8y_A 20 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG 54 (373)
T ss_dssp TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred eEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC
Confidence 455668899999999999986 5689999999964
No 345
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=95.15 E-value=0.0096 Score=58.21 Aligned_cols=35 Identities=31% Similarity=0.626 Sum_probs=29.2
Q ss_pred cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
.|...++||+|+||+||+|+..++..||||++...
T Consensus 41 ~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~ 75 (394)
T 4e7w_A 41 AYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQD 75 (394)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECC
T ss_pred eEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecC
Confidence 35556889999999999999977778999998543
No 346
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=95.14 E-value=0.0058 Score=58.24 Aligned_cols=48 Identities=17% Similarity=0.294 Sum_probs=34.4
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccccC---Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHCS---GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~~---~~~~~F~~E~ 539 (540)
+.|...+.||+|+||.||+|... +|+.||+|++..... ...+.|..|+
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~ 92 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEI 92 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHH
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHH
Confidence 34556688999999999999985 478999999964321 1234466664
No 347
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=95.12 E-value=0.009 Score=60.42 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=31.0
Q ss_pred cCCccCeeccCCCCcEEEEEec-CCCEEEEEEecccc--CCcchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLHC--SGAFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~~--~~~~~~F~~E~ 539 (540)
.|.-.+.||+|+||+||+|+-. +|..||||++.... ......|..|+
T Consensus 38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~ 87 (494)
T 3lij_A 38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEV 87 (494)
T ss_dssp HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHH
T ss_pred CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHH
Confidence 4556688999999999999974 68899999996543 22234566665
No 348
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=95.05 E-value=0.01 Score=60.21 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=27.9
Q ss_pred hccCCccCeeccCCCCcEEEEEec-CCCEEEEEEeccc
Q 045304 491 TDRFSENNLIGRGGFGSVYKARIQ-DGMEVAVKVFHLH 527 (540)
Q Consensus 491 t~~f~~~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~~ 527 (540)
.+.|.....||+|+||+||+|+-. +|+.||||++...
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~ 72 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKS 72 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC-
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhh
Confidence 345666788999999999999974 5789999999643
No 349
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=94.95 E-value=0.012 Score=55.09 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.7
Q ss_pred CeeccCCCCcEEEEEe-cCCCEEEEEEecc
Q 045304 498 NLIGRGGFGSVYKARI-QDGMEVAVKVFHL 526 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~ 526 (540)
++||+|+||.||+|.- .+|+.||||++..
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 53 (299)
T 3m2w_A 24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD 53 (299)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred cccccCCCeEEEEEEEcCCCcEEEEEEecc
Confidence 6799999999999987 5689999999953
No 350
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=94.93 E-value=0.012 Score=57.75 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred CeeccCCCCcEEEEEec-CCCEEEEEEecc
Q 045304 498 NLIGRGGFGSVYKARIQ-DGMEVAVKVFHL 526 (540)
Q Consensus 498 ~~ig~G~~G~Vykg~l~-~g~~vAVK~l~~ 526 (540)
++||+|+||+||+|... +|+.||||++..
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~ 97 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD 97 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEEeCc
Confidence 67999999999999874 588999999953
No 351
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=94.84 E-value=0.006 Score=58.51 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=32.6
Q ss_pred ccCCccCeeccCCCCcEEEEEec-CC-CEEEEEEeccccCCcchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ-DG-MEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~-~g-~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.|.-...||+|+||+||+|.-. +| +.||||++.... ...+.+..|+
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~ 67 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEI 67 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHH
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHH
Confidence 34556688999999999999873 34 789999996432 1223454443
No 352
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=94.65 E-value=0.0067 Score=57.01 Aligned_cols=45 Identities=33% Similarity=0.561 Sum_probs=32.5
Q ss_pred cCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCC--cchhhhhhc
Q 045304 493 RFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSG--AFKSFDVEC 539 (540)
Q Consensus 493 ~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~--~~~~F~~E~ 539 (540)
.|.-...||+|+||.||+|+.. ..||||+++..... ..+.|.+|+
T Consensus 37 ~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~ 83 (307)
T 3lb7_A 37 EVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEV 83 (307)
T ss_dssp SCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHH
T ss_pred ceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHH
Confidence 4555678999999999999874 46999998653322 235577775
No 353
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=94.58 E-value=0.014 Score=61.15 Aligned_cols=48 Identities=29% Similarity=0.371 Sum_probs=34.1
Q ss_pred ccCCccCeeccCCCCcEEEEEecC----CCEEEEEEeccccCC-cchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQD----GMEVAVKVFHLHCSG-AFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~~----g~~vAVK~l~~~~~~-~~~~F~~E~ 539 (540)
+.|.-.+.||+|+||.||+|+... +..||||++...... ..+.|..|+
T Consensus 390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~ 442 (656)
T 2j0j_A 390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEA 442 (656)
T ss_dssp GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHH
T ss_pred ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHH
Confidence 345556789999999999999842 467999999653322 235577665
No 354
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=94.44 E-value=0.0044 Score=64.35 Aligned_cols=48 Identities=25% Similarity=0.353 Sum_probs=34.5
Q ss_pred ccCCccCeeccCCCCcEEEEEe-cCCCEEEEEEeccccC-Ccchhhhhhc
Q 045304 492 DRFSENNLIGRGGFGSVYKARI-QDGMEVAVKVFHLHCS-GAFKSFDVEC 539 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l-~~g~~vAVK~l~~~~~-~~~~~F~~E~ 539 (540)
+.|.-...||+|+||.||+|.. .+|+.||||++..... ...+.|..|+
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei 63 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEI 63 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHH
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHH
Confidence 4577778999999999999987 4689999999965422 2234566665
No 355
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=94.23 E-value=0.014 Score=55.86 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=23.9
Q ss_pred ccCCccCeeccCCCCcEEEEEec----CCCEEEEEEeccc
Q 045304 492 DRFSENNLIGRGGFGSVYKARIQ----DGMEVAVKVFHLH 527 (540)
Q Consensus 492 ~~f~~~~~ig~G~~G~Vykg~l~----~g~~vAVK~l~~~ 527 (540)
++|.-.+.||+|+||.||+|+.. .+..||||+....
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~ 76 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQE 76 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecC
Confidence 34666788999999999999985 5789999999654
No 356
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=93.23 E-value=0.069 Score=54.39 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=18.9
Q ss_pred ccCeeccCCCCcEEEEEecCCCEEEEEEecc
Q 045304 496 ENNLIGRGGFGSVYKARIQDGMEVAVKVFHL 526 (540)
Q Consensus 496 ~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~ 526 (540)
+.++||+|+||.||+|.. .|..+|+|+...
T Consensus 340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~ 369 (540)
T 3en9_A 340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVK 369 (540)
T ss_dssp --------CCEEEEEEEC-SSCEEEEEEECC
T ss_pred CCCEEeeCCCEEEEEEEE-CCCeEEEEEEec
Confidence 457899999999999976 478999998754
No 357
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=91.80 E-value=0.084 Score=48.85 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=34.7
Q ss_pred CCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.....||.|.++.||+..+.+|+.++||+...........|.+|+
T Consensus 17 ~~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~ 62 (288)
T 3d1u_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEA 62 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHH
T ss_pred ccceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHH
Confidence 3455679999999999999999999999997543332335577665
No 358
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=89.35 E-value=0.22 Score=30.51 Aligned_cols=10 Identities=10% Similarity=0.109 Sum_probs=3.9
Q ss_pred Hhhheeeecc
Q 045304 454 ILLILRYRKR 463 (540)
Q Consensus 454 ~~~~~~~~~~ 463 (540)
.++++++||+
T Consensus 30 ~~~~~~RRr~ 39 (44)
T 2ks1_B 30 GIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHhhhhH
Confidence 3334444433
No 359
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=84.71 E-value=0.56 Score=43.15 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=33.7
Q ss_pred CCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 494 FSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 494 f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.....+|.|..+.|||.++.||+.|.||+-.........-|.+|.
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea 62 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEA 62 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHH
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHH
Confidence 4455678999999999999999999999987543322223355554
No 360
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=84.26 E-value=0.49 Score=28.92 Aligned_cols=11 Identities=18% Similarity=0.313 Sum_probs=4.3
Q ss_pred HhhheeeeccC
Q 045304 454 ILLILRYRKRV 464 (540)
Q Consensus 454 ~~~~~~~~~~~ 464 (540)
..+++++||++
T Consensus 29 ~~~~~~RRRr~ 39 (44)
T 2l2t_A 29 TFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHhhhhhh
Confidence 33344444333
No 361
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=83.10 E-value=0.45 Score=28.16 Aligned_cols=19 Identities=5% Similarity=0.111 Sum_probs=9.1
Q ss_pred cceecccchhhHHHHHHHH
Q 045304 435 NALLLGTVLPLSTIFMIVV 453 (540)
Q Consensus 435 ~~~~i~~~i~~~~~~~~~~ 453 (540)
...+.+++++.++.+++++
T Consensus 10 ~GaIAGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CCceeeeehHHHHHHHHHH
Confidence 3445555665554443333
No 362
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=81.61 E-value=0.49 Score=28.89 Aligned_cols=7 Identities=14% Similarity=0.487 Sum_probs=3.2
Q ss_pred ecccchh
Q 045304 438 LLGTVLP 444 (540)
Q Consensus 438 ~i~~~i~ 444 (540)
+++.+++
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3444455
No 363
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.63 E-value=11 Score=27.85 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=14.8
Q ss_pred ccccCCCCCCEEEcccCcCccccchhhhcCCCCCCEEEc
Q 045304 28 TKVFNVSTLKVFEVSNNSLSGSLSSIAGVRLPNLEVLRM 66 (540)
Q Consensus 28 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~L 66 (540)
.+|.+|.+|+.+.+-.+ ++ .|....|.+|.+|+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEE
Confidence 34444444444444332 22 333333344444444443
No 364
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.41 E-value=11 Score=27.93 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=33.9
Q ss_pred cCccccchhhhcCCCCCCEEEccCCcccccCCccccCCCCCCEEEccCC
Q 045304 45 SLSGSLSSIAGVRLPNLEVLRMRSNNFCGTIPHFIFNASKLSLLELGDN 93 (540)
Q Consensus 45 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 93 (540)
.++ .|....|.+|.+|+.+.+..+ ++.+-...|.+|.+|+.+.+...
T Consensus 7 ~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344 667777788888888888765 45455667888888888887654
No 365
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=64.10 E-value=6.6 Score=35.04 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=33.4
Q ss_pred HHHHhccCCccCeeccCCCCcEEEEEecCCCEEEEEEeccccCCcchhhhhhc
Q 045304 487 LCRATDRFSENNLIGRGGFGSVYKARIQDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 487 l~~at~~f~~~~~ig~G~~G~Vykg~l~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
+.....++.-....+.|+.+.||+..-. |+.++||+...........+.+|+
T Consensus 9 l~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~ 60 (263)
T 3tm0_A 9 LKKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREK 60 (263)
T ss_dssp HHHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHH
T ss_pred HHHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHH
Confidence 3344455655566777888999999875 689999999643222223455553
No 366
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=58.87 E-value=3.1 Score=37.06 Aligned_cols=27 Identities=15% Similarity=-0.087 Sum_probs=21.4
Q ss_pred ccCCCCcEEEEEecCCCEEEEEEeccc
Q 045304 501 GRGGFGSVYKARIQDGMEVAVKVFHLH 527 (540)
Q Consensus 501 g~G~~G~Vykg~l~~g~~vAVK~l~~~ 527 (540)
+.|..+.||+....+|..++||.....
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~ 55 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG 55 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc
Confidence 345568999999888888999997543
No 367
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=39.22 E-value=17 Score=34.76 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=22.2
Q ss_pred cCeeccCCCCcEEEEEec-CCCEEEEEEec
Q 045304 497 NNLIGRGGFGSVYKARIQ-DGMEVAVKVFH 525 (540)
Q Consensus 497 ~~~ig~G~~G~Vykg~l~-~g~~vAVK~l~ 525 (540)
...+|.|.++.||++... +|..|+||...
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~ 64 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAV 64 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEEC
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecc
Confidence 356899999999999764 46889999864
No 368
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=31.81 E-value=5 Score=39.63 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=8.2
Q ss_pred CCcEEEEEecC-CCEEEE------EEeccc
Q 045304 505 FGSVYKARIQD-GMEVAV------KVFHLH 527 (540)
Q Consensus 505 ~G~Vykg~l~~-g~~vAV------K~l~~~ 527 (540)
||.||+|.+.. ..+||| |+...+
T Consensus 152 fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~ 181 (463)
T 3cxl_A 152 YTTLNREPAYKKHMPVLKETHDERDSTGQD 181 (463)
T ss_dssp BCCC---------CCBGGGC----------
T ss_pred chhhhcccccccCCchhhhhccCccccccc
Confidence 99999999964 368999 877653
No 369
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=21.82 E-value=24 Score=31.85 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=18.1
Q ss_pred cCCCEEEEEEeccccCCcchhhhhhc
Q 045304 514 QDGMEVAVKVFHLHCSGAFKSFDVEC 539 (540)
Q Consensus 514 ~~g~~vAVK~l~~~~~~~~~~F~~E~ 539 (540)
.+|+.||||++........++|.+|+
T Consensus 37 ~~~~~vavK~~~~~~~~~~~~~~~E~ 62 (295)
T 3ugc_A 37 NTGEVVAVKKLQHSTEEHLRDFEREI 62 (295)
T ss_dssp SCCEEEEEEEESCCCHHHHHHHHHHH
T ss_pred CCCcEEEEEEcccCCHHHHHHHHHHH
Confidence 35789999999755443445677775
No 370
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=21.08 E-value=28 Score=19.67 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=7.1
Q ss_pred eecccchhhHHHHHHHH
Q 045304 437 LLLGTVLPLSTIFMIVV 453 (540)
Q Consensus 437 ~~i~~~i~~~~~~~~~~ 453 (540)
.+.+++++.++..+++.
T Consensus 8 aIaGIVvgdi~~t~~i~ 24 (33)
T 2l34_A 8 VLAGIVVGDLVLTVLIA 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eEEeEeHHHHHHHHHHH
Confidence 34444444443333333
Done!