BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045312
(441 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 88.2 bits (217), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 92/363 (25%), Positives = 153/363 (42%), Gaps = 22/363 (6%)
Query: 18 KPAQAGKCNPL--SVFDRLMEKNHIRIVYYFPSTRNGEPGVVTKKLRESLSHVLTCFPIV 75
+PAQ L S D ++ H VY++ T + K L+++LS L F +
Sbjct: 14 RPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSN-FFDAKVLKDALSRALVPFYPM 72
Query: 76 TGRLQKKDDGHWMIKCNDAGVRMVEARTQGSVEEWLKNVNRDKELMLVTWEDMFHKPYFW 135
GRL++ +DG I+CN GV VEA + G V+++ + L+ D +
Sbjct: 73 AGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSY 132
Query: 136 ATFYVQLTEFEEGGLAIGFSCSHLLADPTSATMFVKAWADTTLAGTMLAXXXXXXXXXXR 195
A +Q+T F+ GG+++G H AD S F+ +W+D L
Sbjct: 133 ALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG---LDVTLPPFIDRTL 189
Query: 196 LGNKNPNHNPYTDLINHYKSTIDDRSPAFTNNITNYVTATLAFSGPMVQACML------- 248
L ++P P I + SP + + TA F Q L
Sbjct: 190 LRARDPPQ-PQFQHIEYQPPPALKVSPQTAKSDSVPETAVSIFKLTREQISALKAKSKED 248
Query: 249 -DTSRPSPFEAMAGLLWVCVSKVKGMK--QGLISMSICLDMRKQL--GLDKGFFGNCLVY 303
+T S +E +AG +W C K +G++ QG + I D R +L L G+FGN +
Sbjct: 249 GNTISYSSYEMLAGHVWRCACKARGLEVDQG-TKLYIATDGRARLRPSLPPGYFGNVIFT 307
Query: 304 NKVHHAESLLDKSELSEAARAVGESVTKMNNERIMDLIEWLEHHDYEFPPLMNG-HDLIC 362
L+ + AA + +++ +M+N+ + +++LE + L+ G H C
Sbjct: 308 ATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLELQP-DLKALVRGAHTFKC 366
Query: 363 ANL 365
NL
Sbjct: 367 PNL 369
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 147/342 (42%), Gaps = 20/342 (5%)
Query: 18 KPAQAGKCNPL--SVFDRLMEKNHIRIVYYFPSTRNGEPGVVTKKLRESLSHVLTCFPIV 75
+PAQ L S D ++ H VY++ T + K L+++LS L F +
Sbjct: 17 RPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSN-FFDAKVLKDALSRALVPFYPM 75
Query: 76 TGRLQKKDDGHWMIKCNDAGVRMVEARTQGSVEEWLKNVNRDKELMLVTWEDMFHKPYFW 135
GRL++ +DG I+CN GV VEA + G V+++ + L+ D +
Sbjct: 76 AGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSY 135
Query: 136 ATFYVQLTEFEEGGLAIGFSCSHLLADPTSATMFVKAWADTTLAGTMLAXXXXXXXXXXR 195
A +Q+T F+ GG+++G H AD S F+ +W+D L
Sbjct: 136 ALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARG---LDVTLPPFIDRTL 192
Query: 196 LGNKNPNHNPYTDLINHYKSTIDDRSP--AFTNNITNYVTATLAFSGPMVQACML----- 248
L ++P P I + SP A ++++ + + + A
Sbjct: 193 LRARDPPQ-PQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKED 251
Query: 249 -DTSRPSPFEAMAGLLWVCVSKVKGMK--QGLISMSICLDMRKQL--GLDKGFFGNCLVY 303
+T S +E +AG +W C K +G++ QG + I D R +L L G+FGN +
Sbjct: 252 GNTISYSSYEMLAGHVWRCACKARGLEVDQG-TKLYIATDGRARLRPSLPPGYFGNVIFT 310
Query: 304 NKVHHAESLLDKSELSEAARAVGESVTKMNNERIMDLIEWLE 345
L+ + AA + +++ +M+N+ + +++LE
Sbjct: 311 ATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLE 352
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 84.7 bits (208), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 147/342 (42%), Gaps = 20/342 (5%)
Query: 18 KPAQAGKCNPL--SVFDRLMEKNHIRIVYYFPSTRNGEPGVVTKKLRESLSHVLTCFPIV 75
+PAQ L S D ++ H VY++ T + K L+++LS L F +
Sbjct: 17 RPAQETPGRNLWNSNVDLVVPNFHTPSVYFYRPTGSSN-FFDAKVLKDALSRALVPFYPM 75
Query: 76 TGRLQKKDDGHWMIKCNDAGVRMVEARTQGSVEEWLKNVNRDKELMLVTWEDMFHKPYFW 135
GRL++ +DG I+CN GV VEA + G V+++ + L+ D +
Sbjct: 76 AGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQGISSY 135
Query: 136 ATFYVQLTEFEEGGLAIGFSCSHLLADPTSATMFVKAWADTTLAGTMLAXXXXXXXXXXR 195
A +Q+T F+ GG+++G H AD S F+ +W+D L
Sbjct: 136 ALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG---LDVTLPPFIDRTL 192
Query: 196 LGNKNPNHNPYTDLINHYKSTIDDRSP--AFTNNITNYVTATLAFSGPMVQACML----- 248
L ++P P I + SP A ++++ + + + A
Sbjct: 193 LRARDPPQ-PQFQHIEYQPPPALAVSPQTAASDSVPETAVSIFKLTREQISALKAKSKED 251
Query: 249 -DTSRPSPFEAMAGLLWVCVSKVKGMK--QGLISMSICLDMRKQL--GLDKGFFGNCLVY 303
+T S +E +AG +W C K +G++ QG + I D R +L L G+FGN +
Sbjct: 252 GNTISYSSYEMLAGHVWRCACKARGLEVDQG-TKLYIATDGRARLRPSLPPGYFGNVIFT 310
Query: 304 NKVHHAESLLDKSELSEAARAVGESVTKMNNERIMDLIEWLE 345
L+ + AA + +++ +M+N+ + +++LE
Sbjct: 311 ATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSALDYLE 352
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 10/167 (5%)
Query: 16 STKPAQAGKCNPLSVFDRLMEKNHIRIVYYFPS--TRNGEPGVVTKKLRESLSHVLTCFP 73
S+ Q+ KC +S D+L+ HI + ++P+ N +P ++ L++SLS VLT F
Sbjct: 16 SSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLSKVLTHFY 75
Query: 74 IVTGRLQKKDDGHWMIKCNDAGVRMVEARTQGSVEEWLKNV----NRDKELMLVTWEDMF 129
+ GR+ + CND+GV VEAR Q + + ++NV D+ L +
Sbjct: 76 PLAGRINVNSS----VDCNDSGVPFVEARVQAQLSQAIQNVVELEKLDQYLPSAAYPGGK 131
Query: 130 HKPYFWATFYVQLTEFEEGGLAIGFSCSHLLADPTSATMFVKAWADT 176
+ V+++ FE GG AIG + SH +AD S F+ AW T
Sbjct: 132 IEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTAT 178
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 37/217 (17%)
Query: 138 FYVQLTEFEEGGLAIGFSCSHLLADPTSATMFVKAWADTTLAGTMLAXXXXXXXXXXRLG 197
F VQ+T F G+AIG + H L D ++ F+KAW +G L
Sbjct: 150 FSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN---------NDESFLA 200
Query: 198 NKNPNHNPYTDLINHYKSTIDD----RSPAFTNNITNYVTATLAFSGPMVQACMLDT--- 250
N P D I Y +D+ R+ + N +YVT +LA ++A + T
Sbjct: 201 NGT---RPLYDRIIKY-PXLDEAYLKRAKVESFN-EDYVTQSLAGPSDKLRATFILTRAV 255
Query: 251 ---------------SRPSPFEAMAGLLWVCVSKVKGMKQGLISMSICLDMRKQLGLDKG 295
S F +W C++K + K L I R + +
Sbjct: 256 INQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRARXKPPIPTA 315
Query: 296 FFGNCL-VYNKVHHAESLLDKSELSEAARAVGESVTK 331
+FGNC+ + L+ K AA+ +GE++ K
Sbjct: 316 YFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHK 352
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 83/217 (38%), Gaps = 37/217 (17%)
Query: 138 FYVQLTEFEEGGLAIGFSCSHLLADPTSATMFVKAWADTTLAGTMLAXXXXXXXXXXRLG 197
F VQ+T F G+AIG + H L D ++ F+KAW +G L
Sbjct: 150 FSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIARSGN---------NDESFLA 200
Query: 198 NKNPNHNPYTDLINHYKSTIDD----RSPAFTNNITNYVTATLAFSGPMVQACMLDT--- 250
N P D I Y +D+ R+ + N +YVT +LA ++A + T
Sbjct: 201 NGT---RPLYDRIIKY-PMLDEAYLKRAKVESFN-EDYVTQSLAGPSDKLRATFILTRAV 255
Query: 251 ---------------SRPSPFEAMAGLLWVCVSKVKGMKQGLISMSICLDMRKQLGLDKG 295
S F +W C++K + K L I R + +
Sbjct: 256 INQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAKSRNDKLQLFGFPIDRRARMKPPIPTA 315
Query: 296 FFGNCL-VYNKVHHAESLLDKSELSEAARAVGESVTK 331
+FGNC+ + L+ K AA+ +GE++ K
Sbjct: 316 YFGNCVGGCAAIAKTNLLIGKEGFITAAKLIGENLHK 352
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 89/258 (34%), Gaps = 25/258 (9%)
Query: 140 VQLTEFEEGGLAIGFSCSHLLADPTSATMFVKAWA-DTTLAGTMLAXXXXXXXXXXRLGN 198
+Q+T F G++IGF+ H+ D + FV+AWA G R
Sbjct: 147 IQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAWALLNKFGGDEQFLANEFIPFYDRSVI 206
Query: 199 KNPNHNPYTDLINHYKSTIDDRSPAFTNNITNYVTATLAFSGPMVQAC--MLDTSRP--- 253
K+PN + N K + + V T + + ++ T RP
Sbjct: 207 KDPN-GVGXSIWNEXKKYKHXXKXSDVVTPPDKVRGTFIITRHDIGKLKNLVLTRRPKLT 265
Query: 254 --SPFEAMAGLLWVCVSKVKGM------KQGLISMSICLDMRKQLG--LDKGFFGNCLV- 302
+ F +W C+ K + + G D R Q L +FGN LV
Sbjct: 266 HVTSFTVTCAYVWTCIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVG 325
Query: 303 YNKVHHAESLLDKSELSEAARAVGESVTKMNNERIMDLIEWLEHHDY--EFPPLMNGHDL 360
Y L K + A +GE++ K + EW+ + E+ + L
Sbjct: 326 YVARTRQVDLAGKEGFTIAVELIGEAIRKRXKDE-----EWILSGSWFKEYDKVDAKRSL 380
Query: 361 ICANLEDLDPYATLFEEG 378
A LD YA F G
Sbjct: 381 SVAGSPKLDLYAADFGWG 398
>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With
10z-Hymenialdisine
Length = 339
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 320 EAARAVGESVTKMNNE------RIMDLIEWLEHHDYEFPPLMNGHDLICANLEDLDPYAT 373
EAAR+ + + +N R + ++EW EHH GH I L L Y
Sbjct: 56 EAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH---------GHICIVFELLGLSTYDF 106
Query: 374 LFEEGFVPIRVSYYVEPVFGI 394
+ E GF+P R+ + + + I
Sbjct: 107 IKENGFLPFRLDHIRKMAYQI 127
>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In
Complex With A Novel Substituted Indole Inhibitor
Length = 339
Score = 34.7 bits (78), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 320 EAARAVGESVTKMNNE------RIMDLIEWLEHHDYEFPPLMNGHDLICANLEDLDPYAT 373
EAAR+ + + +N R + ++EW EHH GH I L L Y
Sbjct: 56 EAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH---------GHICIVFELLGLSTYDF 106
Query: 374 LFEEGFVPIRVSYYVEPVFGI 394
+ E GF+P R+ + + + I
Sbjct: 107 IKENGFLPFRLDHIRKMAYQI 127
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 37 KNHIRIVYYFPSTRNGEPGVVTKKLRESLSHVLTCFPIVT--GRLQKKDDGHWMIKCNDA 94
K +RI++Y P T + E G + E ++ ++T P G K DG W+ +D
Sbjct: 149 KTLLRILHYPPXTGDEEXGAIRAAAHEDIN-LITVLPTANEPGLQVKAKDGSWLDVPSDF 207
Query: 95 G 95
G
Sbjct: 208 G 208
>pdb|2INR|A Chain A, Crystal Structure Of A 59 Kda Fragment Of Topoisomerase Iv
Subunit A (Grla) From Staphylococcus Aureus
Length = 514
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 94 AGVRMVEARTQGSVEEWLKNVNRDKELMLVTWEDMFHKPYFWATFYVQLTEFEEGGLAIG 153
A +R EA+ EE L+++N++ + ++D +P + + L G++ G
Sbjct: 138 AAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLPSRFPNLLVNGSTGISAG 197
Query: 154 FSCS---HLLADPTSATMFVKAWADTTLAGTM 182
++ H LA+ AT+ D T+ M
Sbjct: 198 YATDIPPHNLAEVIQATLKYIDNPDITVNQLM 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,245,503
Number of Sequences: 62578
Number of extensions: 526956
Number of successful extensions: 1121
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 17
length of query: 441
length of database: 14,973,337
effective HSP length: 102
effective length of query: 339
effective length of database: 8,590,381
effective search space: 2912139159
effective search space used: 2912139159
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)