BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045313
(234 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HRR|A Chain A, The Product Template Domain From Pksa With Harris Compound
Bound
pdb|3HRR|B Chain B, The Product Template Domain From Pksa With Harris Compound
Bound
Length = 356
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 35 TIDQVLASIPKILEEFETGLRRLYDEGAR-NFWIHNTGPLGCLAQNVAKFGTDLSMLDEL 93
T D L S+ + + E++T +R+L+D A+ F +N L ++A+F D +LD L
Sbjct: 148 TSDAQLKSLRRSVSEYKTHIRQLHDGHAKGQFMRYNRKTGYKLMSSMARFNPDYMLLDYL 207
Query: 94 GCVSGHNQAAKLFNLQL 110
N+AA + L
Sbjct: 208 VLNEAENEAASGVDFSL 224
>pdb|3HRQ|A Chain A, The Product Template Domain From Pksa With Palmitate Bound
pdb|3HRQ|B Chain B, The Product Template Domain From Pksa With Palmitate Bound
Length = 357
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 35 TIDQVLASIPKILEEFETGLRRLYDEGAR-NFWIHNTGPLGCLAQNVAKFGTDLSMLDEL 93
T D L S+ + + E++T +R+L+D A+ F +N L ++A+F D +LD L
Sbjct: 149 TSDAQLKSLRRSVSEYKTHIRQLHDGHAKGQFMRYNRKTGYKLMSSMARFNPDYMLLDYL 208
Query: 94 GCVSGHNQAAKLFNLQL 110
N+AA + L
Sbjct: 209 VLNEAENEAASGVDFSL 225
>pdb|2Q7A|A Chain A, Crystal Structure Of The Cell Surface Heme Transfer
Protein Shp
pdb|2Q7A|B Chain B, Crystal Structure Of The Cell Surface Heme Transfer
Protein Shp
Length = 152
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 14 SKGLYTFDIGQNDLAGAFYSKTIDQVLASIPKILEEFETGLRRLYDEGARNFWIH--NTG 71
S G ++FDIGQ + G YS + +V + KI+ F L G FWI TG
Sbjct: 26 SGGEHSFDIGQGMVEGTVYSDAMLEV-SDAGKIVLTFRMSLADY--SGNYQFWIQPGGTG 82
Query: 72 PLGCLAQNVAKFGTD 86
+ N+ + GTD
Sbjct: 83 SFQAVDYNITQKGTD 97
>pdb|2QPN|A Chain A, Ges-1 Beta-Lactamase
pdb|2QPN|B Chain B, Ges-1 Beta-Lactamase
Length = 287
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 32 YSKTIDQVLASIPKILEEFETGLRRLYDEGARNFWIHNTGPLGCLAQNVAKFGTDLSMLD 91
+S ++ LAS + E +L D GA N + G + Q K G +S LD
Sbjct: 99 WSPATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLD 158
Query: 92 ELGCVSGHNQAAKLFNLQLH-ALCKKLQGDYTDSNITYVDIYTIKYSLIANYS-----RY 145
G N L + A+ + + +T +TI+ LI N + R
Sbjct: 159 RKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATLRA 218
Query: 146 GF 147
GF
Sbjct: 219 GF 220
>pdb|3V3R|A Chain A, Crystal Structure Of Ges-11
pdb|3V3R|B Chain B, Crystal Structure Of Ges-11
Length = 287
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 32 YSKTIDQVLASIPKILEEFETGLRRLYDEGARNFWIHNTGPLGCLAQNVAKFGTDLSMLD 91
+S ++ LAS + E +L D GA N + G + Q K G +S LD
Sbjct: 99 WSPATERFLASGHMTVLEAAQAAVQLSDNGATNLLLREIGGPAAMTQYFRKIGDSVSRLD 158
Query: 92 ELGCVSGHNQAAKLFNLQLH-ALCKKLQGDYTDSNITYVDIYTIKYSLIANYS-----RY 145
G N L + A+ + + +T +TI+ LI N + R
Sbjct: 159 RKEPEMGDNTPGDLRDTTTPIAMARTVAKVLYGGALTSTSTHTIERWLIGNQTGDATLRA 218
Query: 146 GF 147
GF
Sbjct: 219 GF 220
>pdb|4AWE|A Chain A, The Crystal Structure Of Chrysonilia Sitophila
Endo-Beta-D- 1,4-Mannanase
Length = 387
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 64 NFWIHNTGPLGCLAQN---VAKFG--TDLSMLDELGCVSGHNQAAKLFNLQLHALCKKLQ 118
N WIH+ G A + ++G TD LD+LG V + + Q A+ +KL
Sbjct: 280 NQWIHDHAASGRAANKPVVLEEYGWMTDKGRLDQLGQVKNETRLEVVGGWQKIAIQEKLA 339
Query: 119 GD 120
GD
Sbjct: 340 GD 341
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5I|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5K|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
pdb|3S5M|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease
From The Malaria Parasite Plasmodium Falciparum
Length = 1193
Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 62 ARNFWIHNTGPLGCLAQNVAKFGTDLSMLDELGCVSGHNQAAKLFNLQLHALCKK 116
+ +F I +G ++ NVA + D D L +N A LFNL++H L K
Sbjct: 776 SEDFVILREKNIGSMSANVALYSKD----DHLNVTDKYN-AQALFNLEMHVLSHK 825
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,479,745
Number of Sequences: 62578
Number of extensions: 315321
Number of successful extensions: 688
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 686
Number of HSP's gapped (non-prelim): 13
length of query: 234
length of database: 14,973,337
effective HSP length: 96
effective length of query: 138
effective length of database: 8,965,849
effective search space: 1237287162
effective search space used: 1237287162
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)