BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045314
(992 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VZO|A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZO|B Chain B, Crystal Structure Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
Length = 1032
Score = 189 bits (481), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 204/798 (25%), Positives = 326/798 (40%), Gaps = 131/798 (16%)
Query: 38 PTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYTFWFFTTFQC 97
P P W TV A L++N DPFY + + ++ W++ T
Sbjct: 74 PGFPTSGWYPVSSRSTVYAGLLQNGKYADPFYSTNMQNV-----PAAQFSVPWWYRTDLN 128
Query: 98 KLSENQHLDLNFRAINYSAEVYLNGQKRVLQ---KGMFRRHSLDVTDILHPDGQNLLAVL 154
+ L+F + A+V++NG K + G + RH LD+T +H G N +A
Sbjct: 129 VDDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHT-GVNSVAFK 187
Query: 155 VHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVK 214
V+P D +D++ ++ DW D+N GI +V + +G V
Sbjct: 188 VYPNDP----------------NRDLSMGWI---DWAQTPPDQNMGIVRDVLVRRSGAVA 228
Query: 215 IIDPHLVSSFCQPVKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDL 274
+ H++ + D L ++ N S + V T +
Sbjct: 229 LRSAHVIQKLNSALDHAD---------------LTVKADVRNDS--------ANAVQTTV 265
Query: 275 EGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGY 334
G V QT +S++ TFP + +PN+WWP GMG Q Y + ++ V G
Sbjct: 266 AGTVAGKPISQT--VSLAAKERKTVTFPLVGLDRPNVWWPAGMGGQHRYDLDLTASVGGT 323
Query: 335 GESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDI 394
SD FG R +++ + N++GGR + VNG+P+ IRGG + D LR ++ +
Sbjct: 324 -PSDAAKSKFGVRDVKATL-NSSGGRQYSVNGKPLLIRGGGYT-PDLFLRWNETAAADKL 380
Query: 395 KFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLV---WQ--EFWITGDVDG--RGVPVS 447
K+ ++ +N +R G E EF+ D G+L W+ + W G V+G +G P
Sbjct: 381 KYVLNLGLNTVRL--EGHIEPDEFFDIADDLGVLTMPGWECCDKW-EGQVNGEEKGEPWV 437
Query: 448 NPDGPL-DHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKN 506
D P+ +F R LR+HPS+ + G+E P I + + +K +
Sbjct: 438 ESDYPIAKASMFSEAER-----LRDHPSVISFHIGSEFAPDRRIEQGYLDAMKAADF--- 489
Query: 507 SNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFADGKGNFTDGPYEIQYPEDFF-- 564
+ + PS I G+ G +GPY+ P ++
Sbjct: 490 ------LLPVIPAASARPSP--------ITGA--------SGMKMNGPYDYVPPVYWYDK 527
Query: 565 --KDSFYQYGFNPEVGS-VGMPVAATIRATMPPEG----WQIPVFKQGSDGYIEEVPNPI 617
KD + FN E + V +P T++ M W+ P KQ
Sbjct: 528 SQKDRGGAWSFNSETSAGVDIPTMDTLKRMMSASELDTMWKNPSAKQ------------- 574
Query: 618 WKYHKYIPYSKPG-KVHDQILL--YGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSK 674
YH+ + K+ L YG +L+DF KAQL Y RA E SR ++
Sbjct: 575 --YHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQLSQYENVRAEFES-HSRNYTD 631
Query: 675 ----YTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLASYFIEVVN 730
TG++ W +PWT L Q +D +DQ +YG + A EP+H+Q + + + V+N
Sbjct: 632 STNPSTGLIYWMLNSPWTSLHWQLFDAYMDQNGAYYGAKKANEPLHIQYSHDNRSVVVIN 691
Query: 731 TTSQELSDVAIEASVWDLDGACPYYKVTEKLSVPPKKVVSIAEMKYPKTKNPKPVYFLLL 790
TS +S + +++LDG Y LSV + A + P Y L
Sbjct: 692 QTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSVGALGAKATA-VTVPAVSGLSTTY-LAK 749
Query: 791 KLYNMSDYGIISRNFYWL 808
+ S +SRN YWL
Sbjct: 750 NVLTDSSGKEVSRNVYWL 767
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 944 ILPVHYSDNYFSLAPGEVMPIKISFEVP--HGVTPKVTLHGWN 984
+LPV ++DN SL PGE + + G P V + GWN
Sbjct: 848 VLPVEWNDNAVSLWPGETTTLTAKYRTADLKGSKPSVRISGWN 890
>pdb|2VZS|A Chain A, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2VZS|B Chain B, Chitosan Product Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa
pdb|2X05|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X05|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|A Chain A, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
pdb|2X09|B Chain B, Inhibition Of The Exo-Beta-D-Glucosaminidase Csxa By A
Glucosamine-Configured Castanospermine And An Amino-
Australine Analogue
Length = 1032
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 203/798 (25%), Positives = 326/798 (40%), Gaps = 131/798 (16%)
Query: 38 PTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYTFWFFTTFQC 97
P P W TV A L++N DPFY + + ++ W++ T
Sbjct: 74 PGFPTSGWYPVSSRSTVYAGLLQNGKYADPFYSTNMQNV-----PAAQFSVPWWYRTDLN 128
Query: 98 KLSENQHLDLNFRAINYSAEVYLNGQKRVLQ---KGMFRRHSLDVTDILHPDGQNLLAVL 154
+ L+F + A+V++NG K + G + RH LD+T +H G N +A
Sbjct: 129 VDDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHT-GVNSVAFK 187
Query: 155 VHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVK 214
V+P D +D++ ++ DW D+N GI +V + +G V
Sbjct: 188 VYPNDP----------------NRDLSMGWI---DWAQTPPDQNMGIVRDVLVRRSGAVA 228
Query: 215 IIDPHLVSSFCQPVKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDL 274
+ H++ + D L ++ N S + V T +
Sbjct: 229 LRSAHVIQKLNSALDHAD---------------LTVKADVRNDS--------ANAVQTTV 265
Query: 275 EGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGY 334
G V QT +S++ TFP + +PN+WWP GMG Q Y + ++ V G
Sbjct: 266 AGTVAGKPISQT--VSLAAKERKTVTFPLVGLDRPNVWWPAGMGGQHRYDLDLTASVGGT 323
Query: 335 GESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDI 394
SD FG R +++ + N++GGR + VNG+P+ IRGG + D LR ++ +
Sbjct: 324 -PSDAAKSKFGVRDVKATL-NSSGGRQYSVNGKPLLIRGGGYT-PDLFLRWNETAAADKL 380
Query: 395 KFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLV---WQ--EFWITGDVDG--RGVPVS 447
K+ ++ +N +R G E EF+ D G+L W+ + W G V+G +G P
Sbjct: 381 KYVLNLGLNTVRL--EGHIEPDEFFDIADDLGVLTMPGWECCDKW-EGQVNGEEKGEPWV 437
Query: 448 NPDGPL-DHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKN 506
D P+ +F R LR+HPS+ + G++ P I + + +K +
Sbjct: 438 ESDYPIAKASMFSEAER-----LRDHPSVISFHIGSDFAPDRRIEQGYLDAMKAADF--- 489
Query: 507 SNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFADGKGNFTDGPYEIQYPEDFF-- 564
+ + PS I G+ G +GPY+ P ++
Sbjct: 490 ------LLPVIPAASARPSP--------ITGA--------SGMKMNGPYDYVPPVYWYDK 527
Query: 565 --KDSFYQYGFNPEVGS-VGMPVAATIRATMPPEG----WQIPVFKQGSDGYIEEVPNPI 617
KD + FN E + V +P T++ M W+ P KQ
Sbjct: 528 SQKDRGGAWSFNSETSAGVDIPTMDTLKRMMSASELDTMWKNPSAKQ------------- 574
Query: 618 WKYHKYIPYSKPG-KVHDQILL--YGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSK 674
YH+ + K+ L YG +L+DF KAQL Y RA E SR ++
Sbjct: 575 --YHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQLSQYENVRAEFES-HSRNYTD 631
Query: 675 ----YTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLASYFIEVVN 730
TG++ W +PWT L Q +D +DQ +YG + A EP+H+Q + + + V+N
Sbjct: 632 STNPSTGLIYWMLNSPWTSLHWQLFDAYMDQNGAYYGAKKANEPLHIQYSHDNRSVVVIN 691
Query: 731 TTSQELSDVAIEASVWDLDGACPYYKVTEKLSVPPKKVVSIAEMKYPKTKNPKPVYFLLL 790
TS +S + +++LDG Y LSV + A + P Y L
Sbjct: 692 QTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSVGALGAKATA-VTVPAVSGLSTTY-LAK 749
Query: 791 KLYNMSDYGIISRNFYWL 808
+ S +SRN YWL
Sbjct: 750 NVLTDSSGKEVSRNVYWL 767
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 944 ILPVHYSDNYFSLAPGEVMPIKISFEVP--HGVTPKVTLHGWN 984
+LPV ++DN SL PGE + + G P V + GWN
Sbjct: 848 VLPVEWNDNAVSLWPGETTTLTAKYRTADLKGSKPSVRISGWN 890
>pdb|2VZU|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
pdb|2VZU|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
D469a With Pnp-Beta-D-Glucosamine
Length = 1032
Score = 187 bits (474), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 203/798 (25%), Positives = 325/798 (40%), Gaps = 131/798 (16%)
Query: 38 PTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYTFWFFTTFQC 97
P P W TV A L++N DPFY + + ++ W++ T
Sbjct: 74 PGFPTSGWYPVSSRSTVYAGLLQNGKYADPFYSTNMQNV-----PAAQFSVPWWYRTDLN 128
Query: 98 KLSENQHLDLNFRAINYSAEVYLNGQKRVLQ---KGMFRRHSLDVTDILHPDGQNLLAVL 154
+ L+F + A+V++NG K + G + RH LD+T +H G N +A
Sbjct: 129 VDDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVH-TGVNSVAFK 187
Query: 155 VHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVK 214
V+P D +D++ ++ DW D+N GI +V + +G V
Sbjct: 188 VYPNDP----------------NRDLSMGWI---DWAQTPPDQNMGIVRDVLVRRSGAVA 228
Query: 215 IIDPHLVSSFCQPVKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDL 274
+ H++ + D L ++ N S + V T +
Sbjct: 229 LRSAHVIQKLNSALDHAD---------------LTVKADVRNDS--------ANAVQTTV 265
Query: 275 EGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGY 334
G V QT +S++ TFP + +PN+WWP GMG Q Y + ++ V G
Sbjct: 266 AGTVAGKPISQT--VSLAAKERKTVTFPLVGLDRPNVWWPAGMGGQHRYDLDLTASVGGT 323
Query: 335 GESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDI 394
SD FG R +++ + N++GGR + VNG+P+ IRGG + D LR ++ +
Sbjct: 324 -PSDAAKSKFGVRDVKATL-NSSGGRQYSVNGKPLLIRGGGYT-PDLFLRWNETAAADKL 380
Query: 395 KFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLV---WQ--EFWITGDVDG--RGVPVS 447
K+ ++ +N +R G E EF+ D G+L W+ + W G V+G +G P
Sbjct: 381 KYVLNLGLNTVRL--EGHIEPDEFFDIADDLGVLTMPGWECCDKW-EGQVNGEEKGEPWV 437
Query: 448 NPDGPL-DHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKN 506
D P+ +F R LR+HPS+ + G+ P I + + +K +
Sbjct: 438 ESDYPIAKASMFSEAER-----LRDHPSVISFHIGSAFAPDRRIEQGYLDAMKAADF--- 489
Query: 507 SNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFADGKGNFTDGPYEIQYPEDFF-- 564
+ + PS I G+ G +GPY+ P ++
Sbjct: 490 ------LLPVIPAASARPSP--------ITGA--------SGMKMNGPYDYVPPVYWYDK 527
Query: 565 --KDSFYQYGFNPEVGS-VGMPVAATIRATMPPEG----WQIPVFKQGSDGYIEEVPNPI 617
KD + FN E + V +P T++ M W+ P KQ
Sbjct: 528 SQKDRGGAWSFNSETSAGVDIPTMDTLKRMMSASELDTMWKNPSAKQ------------- 574
Query: 618 WKYHKYIPYSKPG-KVHDQILL--YGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSK 674
YH+ + K+ L YG +L+DF KAQL Y RA E SR ++
Sbjct: 575 --YHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQLSQYENVRAEFES-HSRNYTD 631
Query: 675 ----YTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLASYFIEVVN 730
TG++ W +PWT L Q +D +DQ +YG + A EP+H+Q + + + V+N
Sbjct: 632 STNPSTGLIYWMLNSPWTSLHWQLFDAYMDQNGAYYGAKKANEPLHIQYSHDNRSVVVIN 691
Query: 731 TTSQELSDVAIEASVWDLDGACPYYKVTEKLSVPPKKVVSIAEMKYPKTKNPKPVYFLLL 790
TS +S + +++LDG Y LSV + A + P Y L
Sbjct: 692 QTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSVGALGAKATA-VTVPAVSGLSTTY-LAK 749
Query: 791 KLYNMSDYGIISRNFYWL 808
+ S +SRN YWL
Sbjct: 750 NVLTDSSGKEVSRNVYWL 767
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 944 ILPVHYSDNYFSLAPGEVMPIKISFEVP--HGVTPKVTLHGWN 984
+LPV ++ N SL PGE + + G P V + GWN
Sbjct: 848 VLPVEWNANAVSLWPGETTTLTAKYRTADLKGSKPSVRISGWN 890
>pdb|2VZT|A Chain A, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZT|B Chain B, Complex Of Amycolatopsis Orientalis Exo-Chitosanase Csxa
E541a With Pnp-Beta-D-Glucosamine
pdb|2VZV|A Chain A, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
pdb|2VZV|B Chain B, Substrate Complex Of Amycolatopsis Orientalis Exo-
Chitosanase Csxa E541a With Chitosan
Length = 1032
Score = 186 bits (471), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 202/798 (25%), Positives = 325/798 (40%), Gaps = 131/798 (16%)
Query: 38 PTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYTFWFFTTFQC 97
P P W TV A L++N DPFY + + ++ W++ T
Sbjct: 74 PGFPTSGWYPVSSRSTVYAGLLQNGKYADPFYSTNMQNV-----PAAQFSVPWWYRTDLN 128
Query: 98 KLSENQHLDLNFRAINYSAEVYLNGQKRVLQ---KGMFRRHSLDVTDILHPDGQNLLAVL 154
+ L+F + A+V++NG K + G + RH LD+T +H G N +A
Sbjct: 129 VDDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHT-GVNSVAFK 187
Query: 155 VHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVK 214
V+P D +D++ ++ DW D+N GI +V + +G V
Sbjct: 188 VYPNDP----------------NRDLSMGWI---DWAQTPPDQNMGIVRDVLVRRSGAVA 228
Query: 215 IIDPHLVSSFCQPVKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDL 274
+ H++ + D L ++ N S + V T +
Sbjct: 229 LRSAHVIQKLNSALDHAD---------------LTVKADVRNDS--------ANAVQTTV 265
Query: 275 EGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGY 334
G V QT +S++ TFP + +PN+WWP GMG Q Y + ++ V G
Sbjct: 266 AGTVAGKPISQT--VSLAAKERKTVTFPLVGLDRPNVWWPAGMGGQHRYDLDLTASVGGT 323
Query: 335 GESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDI 394
SD FG R +++ + N++GGR + VNG+P+ IRGG + D LR ++ +
Sbjct: 324 -PSDAAKSKFGVRDVKATL-NSSGGRQYSVNGKPLLIRGGGYT-PDLFLRWNETAAADKL 380
Query: 395 KFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLV---WQ--EFWITGDVDG--RGVPVS 447
K+ ++ +N +R G E EF+ D G+L W+ + W G V+G +G P
Sbjct: 381 KYVLNLGLNTVRL--EGHIEPDEFFDIADDLGVLTMPGWECCDKW-EGQVNGEEKGEPWV 437
Query: 448 NPDGPL-DHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKN 506
D P+ +F R LR+HPS+ + G++ P I + + +K +
Sbjct: 438 ESDYPIAKASMFSEAER-----LRDHPSVISFHIGSDFAPDRRIEQGYLDAMKAADF--- 489
Query: 507 SNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFADGKGNFTDGPYEIQYPEDFF-- 564
+ + PS I G+ G +GPY+ P ++
Sbjct: 490 ------LLPVIPAASARPSP--------ITGA--------SGMKMNGPYDYVPPVYWYDK 527
Query: 565 --KDSFYQYGFNPEVGS-VGMPVAATIRATMPPEG----WQIPVFKQGSDGYIEEVPNPI 617
KD + FN + V +P T++ M W+ P KQ
Sbjct: 528 SQKDRGGAWSFNSATSAGVDIPTMDTLKRMMSASELDTMWKNPSAKQ------------- 574
Query: 618 WKYHKYIPYSKPG-KVHDQILL--YGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSK 674
YH+ + K+ L YG +L+DF KAQL Y RA E SR ++
Sbjct: 575 --YHRSSSDTFGNLKLFGDALTKRYGASANLNDFVRKAQLSQYENVRAEFES-HSRNYTD 631
Query: 675 ----YTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLASYFIEVVN 730
TG++ W +PWT L Q +D +DQ +YG + A EP+H+Q + + + V+N
Sbjct: 632 STNPSTGLIYWMLNSPWTSLHWQLFDAYMDQNGAYYGAKKANEPLHIQYSHDNRSVVVIN 691
Query: 731 TTSQELSDVAIEASVWDLDGACPYYKVTEKLSVPPKKVVSIAEMKYPKTKNPKPVYFLLL 790
TS +S + +++LDG Y LSV + A + P Y L
Sbjct: 692 QTSNAVSGLTATTKLYNLDGTEKYSNTKTGLSVGALGAKATA-VTVPAVSGLSTTY-LAK 749
Query: 791 KLYNMSDYGIISRNFYWL 808
+ S +SRN YWL
Sbjct: 750 NVLTDSSGKEVSRNVYWL 767
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 944 ILPVHYSDNYFSLAPGEVMPIKISFEVP--HGVTPKVTLHGWN 984
+LPV ++DN SL PGE + + G P V + GWN
Sbjct: 848 VLPVEWNDNAVSLWPGETTTLTAKYRTADLKGSKPSVRISGWN 890
>pdb|2VJX|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VJX|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VL4|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VMF|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VO5|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VOT|A Chain A, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VOT|B Chain B, Structural And Biochemical Evidence For A Boat-like
Transition State In Beta-mannosidases
pdb|2VQT|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQT|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VR4|A Chain A, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
pdb|2VR4|B Chain B, Transition-state Mimicry In Mannoside Hydrolysis:
Characterisation Of Twenty Six Inhibitors And Insight
Into Binding From Linear Free Energy Relationships And
3-d Structure
Length = 846
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 212/809 (26%), Positives = 313/809 (38%), Gaps = 114/809 (14%)
Query: 13 LDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLE 72
LD+GW E SGT+ WM A VPGTV L+ ++ +P+PFYG+
Sbjct: 11 LDTGW------EFSQSGTE------------KWMPATVPGTVHQDLISHELLPNPFYGMN 52
Query: 73 NEMILDIADSGREYYTFWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMF 132
+ I + + EY T + + Q + L F ++ A+VYLNG + MF
Sbjct: 53 EKKIQWVENEDWEYRTSFIVSEEQLN---RDGIQLIFEGLDTYADVYLNGSLLLKADNMF 109
Query: 133 RRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGD-------HEIGKDVATQ-- 183
++L V +L G+N L + H P T+P G + HE V ++
Sbjct: 110 VGYTLPVKSVLR-KGENHLYIYFHSPIRQ-TLPQYASNGFNYPADNDHHEKHLSVFSRKA 167
Query: 184 -YVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSSFFDN 242
Y GWDW IR +G+W V++ I D ++ S D
Sbjct: 168 PYSYGWDW--GIRMVTSGVWRPVTLRFYDIATISDYYVRQL--------------SLTDE 211
Query: 243 YTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFP 302
R+ S EL + ++V L G V ++ Q +++ PG + T P
Sbjct: 212 NARL----SNELIVNQIVPQKIPAEVRVNVSLNG--TTVTEVK-QQVTLQPGIN-HITLP 263
Query: 303 QLFFYKPNLWWPNGMGKQSLY--TVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGR 360
P W PNG G +LY + +I+ + E SH G R I + G
Sbjct: 264 AEV-TNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQ---SHRIGLRTIRVVNEKDKDGE 319
Query: 361 --LFKVNGQPIFIRGGNWILSDGLL-RLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPE 417
F+VNG P+F +G N+I D LL ++ +RY+T + + NMNM+R WGGG E
Sbjct: 320 SFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYENNL 379
Query: 418 FYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLAL 477
FY D G+LVWQ+F P P A ++ LRNH SLA+
Sbjct: 380 FYDLADENGILVWQDFMFAC--------TPYPSDPTFLKRVEAEAVYNIRRLRNHASLAM 431
Query: 478 WVGGNEQVPPEDINKALKN---DLKLHPYFKNSNETGN---FTEDLSLSVQDPSQYLDGT 531
W G NE I +ALK + K P G F E L +V++ D
Sbjct: 432 WCGNNE------ILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKE----FDSD 481
Query: 532 RIYIQGSLWD---GFADGKGNFTDGPYEIQYPEDFFKDSFYQY-GFNPEVGSVGMPVAAT 587
R Y+ S + G + G + + Y + F+ F E G P T
Sbjct: 482 RFYVHSSPYLANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKT 541
Query: 588 IRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYSKPGKVHDQILLYGIPKDLDD 647
I A PE +QI EV N K + D Y IP+ +D
Sbjct: 542 IAAFAAPEDYQIE----------SEVMNAHQKSSIGNSLIRTYMERD----YIIPESFED 587
Query: 648 FCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYG 707
F ++ R LE R G L W+ + W + D+ + A Y
Sbjct: 588 FVYVGLVLQGQGMRHGLEA-HRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQ 646
Query: 708 CRCAAEPIH---VQLNLASYFIEVVNTTSQELSDVAIEASVWDLDGACPYYKV-TEKLSV 763
+ A P+ +Q N S + +++ + + +E V D DG K+ L V
Sbjct: 647 AKRAFAPVLINPIQQN-DSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEV 705
Query: 764 PPKKVVSIAEMKYPKTKNPKPVYFLLLKL 792
P + K P+ LKL
Sbjct: 706 PANTSKCVYRAKLDGWLTPEDCRRSFLKL 734
>pdb|2JE8|A Chain A, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
pdb|2JE8|B Chain B, Structure Of A Beta-Mannosidase From Bacteroides
Thetaiotaomicron
Length = 848
Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 212/809 (26%), Positives = 313/809 (38%), Gaps = 114/809 (14%)
Query: 13 LDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLE 72
LD+GW E SGT+ WM A VPGTV L+ ++ +P+PFYG+
Sbjct: 13 LDTGW------EFSQSGTE------------KWMPATVPGTVHQDLISHELLPNPFYGMN 54
Query: 73 NEMILDIADSGREYYTFWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMF 132
+ I + + EY T + + Q + L F ++ A+VYLNG + MF
Sbjct: 55 EKKIQWVENEDWEYRTSFIVSEEQLN---RDGIQLIFEGLDTYADVYLNGSLLLKADNMF 111
Query: 133 RRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGD-------HEIGKDVATQ-- 183
++L V +L G+N L + H P T+P G + HE V ++
Sbjct: 112 VGYTLPVKSVLR-KGENHLYIYFHSPIRQ-TLPQYASNGFNYPADNDHHEKHLSVFSRKA 169
Query: 184 -YVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSSFFDN 242
Y GWDW IR +G+W V++ I D ++ S D
Sbjct: 170 PYSYGWDW--GIRMVTSGVWRPVTLRFYDIATISDYYVRQL--------------SLTDE 213
Query: 243 YTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFP 302
R+ S EL + ++V L G V ++ Q +++ PG + T P
Sbjct: 214 NARL----SNELIVNQIVPQKIPAEVRVNVSLNG--TTVTEVK-QQVTLQPGIN-HITLP 265
Query: 303 QLFFYKPNLWWPNGMGKQSLY--TVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGR 360
P W PNG G +LY + +I+ + E SH G R I + G
Sbjct: 266 AEV-TNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQ---SHRIGLRTIRVVNEKDKDGE 321
Query: 361 --LFKVNGQPIFIRGGNWILSDGLL-RLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPE 417
F+VNG P+F +G N+I D LL ++ +RY+T + + NMNM+R WGGG E
Sbjct: 322 SFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYENNL 381
Query: 418 FYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLAL 477
FY D G+LVWQ+F P P A ++ LRNH SLA+
Sbjct: 382 FYDLADENGILVWQDFMFAC--------TPYPSDPTFLKRVEAEAVYNIRRLRNHASLAM 433
Query: 478 WVGGNEQVPPEDINKALKN---DLKLHPYFKNSNETGN---FTEDLSLSVQDPSQYLDGT 531
W G NE I +ALK + K P G F E L +V++ D
Sbjct: 434 WCGNNE------ILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKE----FDSD 483
Query: 532 RIYIQGSLWD---GFADGKGNFTDGPYEIQYPEDFFKDSFYQY-GFNPEVGSVGMPVAAT 587
R Y+ S + G + G + + Y + F+ F E G P T
Sbjct: 484 RFYVHSSPYLANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKT 543
Query: 588 IRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYSKPGKVHDQILLYGIPKDLDD 647
I A PE +QI EV N K + D Y IP+ +D
Sbjct: 544 IAAFAAPEDYQIE----------SEVMNAHQKSSIGNSLIRTYMERD----YIIPESFED 589
Query: 648 FCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYG 707
F ++ R LE R G L W+ + W + D+ + A Y
Sbjct: 590 FVYVGLVLQGQGMRHGLEA-HRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQ 648
Query: 708 CRCAAEPIH---VQLNLASYFIEVVNTTSQELSDVAIEASVWDLDGACPYYKV-TEKLSV 763
+ A P+ +Q N S + +++ + + +E V D DG K+ L V
Sbjct: 649 AKRAFAPVLINPIQQN-DSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEV 707
Query: 764 PPKKVVSIAEMKYPKTKNPKPVYFLLLKL 792
P + K P+ LKL
Sbjct: 708 PANTSKCVYRAKLDGWLTPEDCRRSFLKL 736
>pdb|2WBK|A Chain A, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
pdb|2WBK|B Chain B, Structure Of The Michaelis Complex Of Beta-Mannosidase,
Man2a, Provides Insight Into The Conformational
Itinerary Of Mannoside Hydrolysis
Length = 847
Score = 156 bits (394), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 211/809 (26%), Positives = 313/809 (38%), Gaps = 114/809 (14%)
Query: 13 LDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLE 72
LD+GW E SGT+ WM A VPGTV L+ ++ +P+PFYG+
Sbjct: 11 LDTGW------EFSQSGTE------------KWMPATVPGTVHQDLISHELLPNPFYGMN 52
Query: 73 NEMILDIADSGREYYTFWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMF 132
+ I + + EY T + + Q + L F ++ A+VYLNG + MF
Sbjct: 53 EKKIQWVENEDWEYRTSFIVSEEQLN---RDGIQLIFEGLDTYADVYLNGSLLLKADNMF 109
Query: 133 RRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGD-------HEIGKDVATQ-- 183
++L V +L G+N L + H P T+P G + HE V ++
Sbjct: 110 VGYTLPVKSVLR-KGENHLYIYFHSPIRQ-TLPQYASNGFNYPADNDHHEKHLSVFSRKA 167
Query: 184 -YVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSSFFDN 242
Y GWDW IR +G+W V++ I D ++ S D
Sbjct: 168 PYSYGWDW--GIRMVTSGVWRPVTLRFYDIATISDYYVRQL--------------SLTDE 211
Query: 243 YTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFP 302
R+ S EL + ++V L G V ++ Q +++ PG + T P
Sbjct: 212 NARL----SNELIVNQIVPQKIPAEVRVNVSLNG--TTVTEVK-QQVTLQPGIN-HITLP 263
Query: 303 QLFFYKPNLWWPNGMGKQSLY--TVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGR 360
P W PNG G +LY + +I+ + E SH G R I + G
Sbjct: 264 AEV-TNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQ---SHRIGLRTIRVVNEKDKDGE 319
Query: 361 --LFKVNGQPIFIRGGNWILSDGLL-RLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPE 417
F+VNG P+F +G N+I D LL ++ +RY+T + + NMNM+R WGGG E
Sbjct: 320 SFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYENNL 379
Query: 418 FYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLAL 477
FY D G+LVWQ+F P P A ++ LRNH SLA+
Sbjct: 380 FYDLADENGILVWQDFMFAC--------TPYPSDPTFLKRVEAEAVYNIRRLRNHASLAM 431
Query: 478 WVGGNEQVPPEDINKALKN---DLKLHPYFKNSNETGN---FTEDLSLSVQDPSQYLDGT 531
W G NE I +ALK + K P G F E L +V++ D
Sbjct: 432 WCGNNE------ILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKE----FDSD 481
Query: 532 RIYIQGSLWD---GFADGKGNFTDGPYEIQYPEDFFKDSFYQY-GFNPEVGSVGMPVAAT 587
R Y+ S + G + G + + Y + F+ F + G P T
Sbjct: 482 RFYVHSSPYLANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSQFGFQSFPEMKT 541
Query: 588 IRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYSKPGKVHDQILLYGIPKDLDD 647
I A PE +QI EV N K + D Y IP+ +D
Sbjct: 542 IAAFAAPEDYQIE----------SEVMNAHQKSSIGNSLIRTYMERD----YIIPESFED 587
Query: 648 FCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYG 707
F ++ R LE R G L W+ + W + D+ + A Y
Sbjct: 588 FVYVGLVLQGQGMRHGLEA-HRRNRPYCMGTLYWQLNDSWPVVSWSSIDYYGNWKALHYQ 646
Query: 708 CRCAAEPIH---VQLNLASYFIEVVNTTSQELSDVAIEASVWDLDGACPYYKV-TEKLSV 763
+ A P+ +Q N S + +++ + + +E V D DG K+ L V
Sbjct: 647 AKRAFAPVLINPIQQN-DSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEV 705
Query: 764 PPKKVVSIAEMKYPKTKNPKPVYFLLLKL 792
P + K P+ LKL
Sbjct: 706 PANTSKCVYRAKLDGWLTPEDCRRSFLKL 734
>pdb|2VQU|A Chain A, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
pdb|2VQU|B Chain B, Structural And Biochemical Evidence For A Boat-Like
Transition State In Beta-Mannosidases
Length = 846
Score = 152 bits (385), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 211/809 (26%), Positives = 312/809 (38%), Gaps = 114/809 (14%)
Query: 13 LDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLE 72
LD+GW E SGT+ WM A VPGTV L+ ++ +P+PFYG+
Sbjct: 11 LDTGW------EFSQSGTE------------KWMPATVPGTVHQDLISHELLPNPFYGMN 52
Query: 73 NEMILDIADSGREYYTFWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMF 132
+ I + + EY T + + Q + L F ++ A+VYLNG + MF
Sbjct: 53 EKKIQWVENEDWEYRTSFIVSEEQLN---RDGIQLIFEGLDTYADVYLNGSLLLKADNMF 109
Query: 133 RRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGD-------HEIGKDVATQ-- 183
++L V +L G+N L + H P T+P G + HE V ++
Sbjct: 110 VGYTLPVKSVLR-KGENHLYIYFHSPIRQ-TLPQYASNGFNYPADNDHHEKHLSVFSRKA 167
Query: 184 -YVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSSFFDN 242
Y GWDW IR +G+W V++ I D ++ S D
Sbjct: 168 PYSYGWDW--GIRMVTSGVWRPVTLRFYDIATISDYYVRQL--------------SLTDE 211
Query: 243 YTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFP 302
R+ S EL + ++V L G V ++ Q +++ PG + T P
Sbjct: 212 NARL----SNELIVNQIVPQKIPAEVRVNVSLNG--TTVTEVK-QQVTLQPGIN-HITLP 263
Query: 303 QLFFYKPNLWWPNGMGKQSLY--TVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGR 360
P W PNG G +LY + +I+ + E SH G R I + G
Sbjct: 264 AEV-TNPVRWMPNGWGTPTLYDFSAQIACGDRIVAEQ---SHRIGLRTIRVVNEKDKDGE 319
Query: 361 --LFKVNGQPIFIRGGNWILSDGLL-RLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPE 417
F+VNG P+F +G N+I D LL ++ +RY+T + + NMNM+R WGGG E
Sbjct: 320 SFYFEVNGIPMFAKGANYIPQDALLPNVTTERYQTLFRDMKEANMNMVRIWGGGTYENNL 379
Query: 418 FYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLAL 477
FY D G+LVWQ+F P P A ++ LRNH SLA+
Sbjct: 380 FYDLADENGILVWQDFMFAC--------TPYPSDPTFLKRVEAEAVYNIRRLRNHASLAM 431
Query: 478 WVGGNEQVPPEDINKALKN---DLKLHPYFKNSNETGN---FTEDLSLSVQDPSQYLDGT 531
W G NE I +ALK + K P G F E L +V++ D
Sbjct: 432 WCGNNE------ILEALKYWGFEKKFTPEVYQGLMHGYDKLFRELLPSTVKE----FDSD 481
Query: 532 RIYIQGSLWD---GFADGKGNFTDGPYEIQYPEDFFKDSFYQY-GFNPEVGSVGMPVAAT 587
R Y+ S + G + G + + Y + F+ F E G P T
Sbjct: 482 RFYVHSSPYLANWGRPESWGTGDSHNWGVWYGKKPFESLDTDLPRFMSEFGFQSFPEMKT 541
Query: 588 IRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYSKPGKVHDQILLYGIPKDLDD 647
I A PE +QI EV N K + D Y IP+ +D
Sbjct: 542 IAAFAAPEDYQIE----------SEVMNAHQKSSIGNSLIRTYMERD----YIIPESFED 587
Query: 648 FCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYG 707
F ++ R LE R G L + + W + D+ + A Y
Sbjct: 588 FVYVGLVLQGQGMRHGLEA-HRRNRPYCMGTLYAQLNDSWPVVSWSSIDYYGNWKALHYQ 646
Query: 708 CRCAAEPIH---VQLNLASYFIEVVNTTSQELSDVAIEASVWDLDGACPYYKV-TEKLSV 763
+ A P+ +Q N S + +++ + + +E V D DG K+ L V
Sbjct: 647 AKRAFAPVLINPIQQN-DSLSVYLISDRLDTMEQMTLEMKVVDFDGKTLGKKIQVHSLEV 705
Query: 764 PPKKVVSIAEMKYPKTKNPKPVYFLLLKL 792
P + K P+ LKL
Sbjct: 706 PANTSKCVYRAKLDGWLTPEDCRRSFLKL 734
>pdb|3DEC|A Chain A, Crystal Structure Of A Glycosyl Hydrolases Family 2
Protein From Bacteroides Thetaiotaomicron
Length = 1000
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 322 LYTVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDG 381
LYT+ + + G +++ GFR S I N GR F +NG P+ ++G N
Sbjct: 307 LYTLLLELKDAGGKVTEITGTKVGFRT--SEIKN---GR-FCINGVPVLVKGVNRHEHSQ 360
Query: 382 LLR-LSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVD 440
L R +SK+ + DI+ N+N +R P +Y CD YGL V E I
Sbjct: 361 LGRTVSKELXEQDIRLXKQHNINTVR--NSHYPAHPYWYQLCDRYGLYVIDEANIESHGX 418
Query: 441 GRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNE 483
G G P S + R + +NHPS+ +W GNE
Sbjct: 419 GYG-PASLAKDSTWLPAHIDRTRRXYERSKNHPSVVIWSLGNE 460
>pdb|3GM8|A Chain A, Crystal Structure Of A Beta-glycosidase From Bacteroides
Vulgatus
Length = 801
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/253 (26%), Positives = 108/253 (42%), Gaps = 42/253 (16%)
Query: 248 LHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQY-------T 300
+H ++L+N+ + A +LSI++ T + + + +LQ + SI+ + +
Sbjct: 169 IHFRSKLQNKQS--ATYTLSIEIETQEKKPIKVKTYLQAPNGSIADTSEKIFVSSADSLC 226
Query: 301 FPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGR 360
F KP LW P+ +L +++ D K E L GFR++E N G
Sbjct: 227 FLSGSIRKPLLWSPDSPNVYTL-ICQLTRDNKILDECRL---PVGFRQLEF---NPVSG- 278
Query: 361 LFKVNGQPIFIRGG---------NWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGG 411
F +NG+ + I+G + D LL +K DM N IR
Sbjct: 279 -FLLNGKSLKIKGVCDHHTVGAVGAAVPDDLLHYR-------LKLLKDMGCNAIRTSHNP 330
Query: 412 LAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPD-GPLDHDLFMLCARDTVKLLR 470
+ P FY+ CD G++V E +DG P + D G + + D +K R
Sbjct: 331 FS--PAFYNLCDTMGIMVLNE-----GLDGWNQPKAADDYGNYFDEWWQKDMTDFIKRDR 383
Query: 471 NHPSLALWVGGNE 483
NHPS+ +W GNE
Sbjct: 384 NHPSIIMWSIGNE 396
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 71/169 (42%), Gaps = 20/169 (11%)
Query: 321 SLYTVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSD 380
+LYT+ + + ++L GFR E GR F +NG P+ ++G N
Sbjct: 310 NLYTLVLELKDAQGKVTELTGCEVGFRTSE-----IKDGR-FCINGVPVLVKGTNRHEHS 363
Query: 381 GLLR-LSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDV 439
L R +SK+ + DI+ N+N +R P +Y CD YGL E I
Sbjct: 364 QLGRTVSKELXEQDIRLXKQHNINXVR--NSHYPTHPYWYQLCDRYGLYXIDEANIESHG 421
Query: 440 DGRGVPVSNPDGPLDHDLFMLCARD-----TVKLLRNHPSLALWVGGNE 483
G G P S L D L A + +NHP++ +W GNE
Sbjct: 422 XGYG-PAS-----LAKDSTWLTAHXDRTHRXYERSKNHPAIVIWSQGNE 464
>pdb|1BHG|A Chain A, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|1BHG|B Chain B, Human Beta-Glucuronidase At 2.6 A Resolution
pdb|3HN3|A Chain A, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|B Chain B, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|D Chain D, Human Beta-glucuronidase At 1.7 A Resolution
pdb|3HN3|E Chain E, Human Beta-glucuronidase At 1.7 A Resolution
Length = 613
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 73/185 (39%), Gaps = 30/185 (16%)
Query: 310 NLWWPNGMGKQSLYTVRISVDVKGYGE----SDLWSHLFGFRKIESHIDNATGGRLFKVN 365
+LWWP M ++ Y + V + SD ++ G R + A F +N
Sbjct: 266 SLWWPYLMHERPAYLYSLEVQLTAQTSLGPVSDFYTLPVGIRTV------AVTKSQFLIN 319
Query: 366 GQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYHY---- 421
G+P + G N D +R + +K + N++R W G A R Y Y
Sbjct: 320 GKPFYFHGVN-KHEDADIRGKGFDWPLLVK-----DFNLLR-WLGANAFRTSHYPYAEEV 372
Query: 422 ---CDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALW 478
CD YG++V E G G+ + + M + V+ +NHP++ +W
Sbjct: 373 MQMCDRYGIVVIDE------CPGVGLALPQFFNNVSLHHHMQVMEEVVRRDKNHPAVVMW 426
Query: 479 VGGNE 483
NE
Sbjct: 427 SVANE 431
>pdb|3FN9|A Chain A, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|B Chain B, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|C Chain C, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
pdb|3FN9|D Chain D, Crystal Structure Of Putative Beta-galactosidase From
Bacteroides Fragilis
Length = 692
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 86/404 (21%), Positives = 136/404 (33%), Gaps = 69/404 (17%)
Query: 101 ENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDH 160
E + + L F + AEVY+NG+ KG + + ++ L +N + V
Sbjct: 75 EGKRVFLRFEGVGACAEVYVNGKLAGTHKGGYSAFACEIGTALKLGAENEIIVKADNKAR 134
Query: 161 PGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHL 220
P IP + +++ Y GI+ V + VT I
Sbjct: 135 PDVIP----------VNQNLFGVY--------------GGIYRPVWLIVTEQNNIT---- 166
Query: 221 VSSFCQPVKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCL 280
V+ P I VS + T +L+N A +L + T + G +
Sbjct: 167 VTDCASPGVYITQKDVSKKSADIT-----VKVKLDNAGLQPAAVTLENTIYT--QEGQKV 219
Query: 281 VEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGES-DL 339
H ++ +SP Q P+LW G++ Y ++ + G+ D
Sbjct: 220 GTH--SRSFDLSPQG-TQTYLSTFKLKNPHLW----QGRKDPYLYKVVCRLMADGKVIDE 272
Query: 340 WSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGN-----WILSDGLLRLSKKRYKTDI 394
G RK E G+ F +NG+ + G W L L K D
Sbjct: 273 VVQPLGVRKYE-----IVAGKGFFLNGEKYSMYGVTRHQDWWGLGSAL-----KNEHHDF 322
Query: 395 KFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLD 454
A M++ + Y CD GL++W E V G N L
Sbjct: 323 DLAAIMDVGATTVRFAHYQQSDYLYSRCDTLGLIIWAEIPCVNRVTG--YETENAQSQL- 379
Query: 455 HDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPEDINKALKNDL 498
R+ ++ NHPS+ +W NE P + AL L
Sbjct: 380 --------RELIRQSFNHPSIYVWGLHNEVYQPHEYTAALTRSL 415
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 37.4 bits (85), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETEGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 218 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 271
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 272 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 328
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 329 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 382
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 383 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 436
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 437 RVTRMVQRD-----RNHPSVIIWSLGNE 459
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 249 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 302
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 303 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 359
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 360 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 413
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 414 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 467
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 468 RVTRMVQRD-----RNHPSVIIWSLGNE 490
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 100/268 (37%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K + IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKP----LLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETNGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 249 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 302
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 303 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 359
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 360 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 413
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 414 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 467
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 468 RVTRMVQRD-----RNHPSVIIWSLGNE 490
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 249 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 302
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 303 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 359
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 360 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 413
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 414 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 467
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 468 RVTRMVQRD-----RNHPSVIIWSLGNE 490
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 249 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 302
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 303 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 359
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 360 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 413
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 414 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 467
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 468 RVTRMVQRD-----RNHPSVIIWSLGNE 490
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 385 LSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG- 443
+ ++ DI N N +RC P +Y CD YGL V E +++ G
Sbjct: 367 MDEQTMVQDILLMKQNNFNAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGM 420
Query: 444 VPVSN-PDGP-----LDHDLFMLCARDTVKLLRNHPSLALWVGGNE 483
VP++ D P + + + RD RNHPS+ +W GNE
Sbjct: 421 VPMNRLTDDPRWLPAMSERVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|3IAP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416q)
pdb|3IAP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416q)
Length = 1023
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 63/268 (23%), Positives = 98/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E ++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIQTHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|3IAQ|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E416v)
pdb|3IAQ|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E416v)
Length = 1023
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 97/267 (36%), Gaps = 36/267 (13%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSN-PDGP-----LDHD 456
N +RC P +Y CD YGL V E I V VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDEANI---VTHGMVPMNRLTDDPRWLPAMSER 439
Query: 457 LFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W GNE
Sbjct: 440 VTRMVQRD-----RNHPSVIIWSLGNE 461
>pdb|3K46|A Chain A, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K46|B Chain B, Crystal Structure Of Full-Length E. Coli
Beta-Glucuronidase
pdb|3K4D|A Chain A, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
pdb|3K4D|B Chain B, Crystal Structure Of E. Coli Beta-Glucuronidase With The
Glucaro-D- Lactam Inhibitor Bound
Length = 605
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 97/277 (35%), Gaps = 52/277 (18%)
Query: 237 SSFFDNYTRVYLHASTELENR-STWVAECSLSIQVTTD----------LEGGVCLVEHLQ 285
S F D + +H S L +TWV + ++ V D + G VE
Sbjct: 161 SYFHDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRD 220
Query: 286 TQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLFG 345
++ G Q T L P+LW P G G Y + V K E D++ G
Sbjct: 221 ADQQVVATG---QGTSGTLQVVNPHLWQP-GEG----YLYELCVTAKSQTECDIYPLRVG 272
Query: 346 FRKIESHIDNATGGRLFKVNGQPIFIRG-GNWILSDGLLRLSKKRYKTDIKFHADMNMNM 404
R + A G F +N +P + G G +D L K + + H M+
Sbjct: 273 IRSV------AVKGEQFLINHKPFYFTGFGRHEDAD----LRGKGFDNVLMVHDHALMD- 321
Query: 405 IRCWGGGLAERPEFYHYC-------DIYGLLVWQEFWITGDVDGRGVPVSNPDGPLD--- 454
W G + R Y Y D +G++V E G G+ + P +
Sbjct: 322 ---WIGANSYRTSHYPYAEEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYS 378
Query: 455 --------HDLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ ++ + +NHPS+ +W NE
Sbjct: 379 EEAVNGETQQAHLQAIKELIARDKNHPSVVMWSIANE 415
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 249 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 302
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 303 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 359
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 360 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 413
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 414 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 467
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W G+E
Sbjct: 468 RVTRMVQRD-----RNHPSVIIWSLGDE 490
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 99/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 249 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 302
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 303 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 359
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 360 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 413
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 414 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 467
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W G+E
Sbjct: 468 RVTRMVQRD-----RNHPSVIIWSLGSE 490
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 98/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 220 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 273
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 274 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 330
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 331 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 384
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 385 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 438
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W G E
Sbjct: 439 RVTRMVQRD-----RNHPSVIIWSLGTE 461
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 98/268 (36%), Gaps = 38/268 (14%)
Query: 228 VKIIDPHLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQ 287
+I D H+ + F D+++R L A ++ E ++VT L G V
Sbjct: 249 TQISDFHVATRFNDDFSRAVLEAEVQM------CGELRDYLRVTVSLWQGETQVASGTAP 302
Query: 288 ---HLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLF 344
+ G + +L P LW +LY + + + +
Sbjct: 303 FGGEIIDERGGYADRVTLRLNVENPKLW---SAEIPNLYRAVVELHTADGTLIEAEACDV 359
Query: 345 GFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGL--LRLSKKRYKTDIKFHADMNM 402
GFR++ I+N K IRG N L + ++ DI N
Sbjct: 360 GFREVR--IENGLLLLNGKPL----LIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNF 413
Query: 403 NMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRG-VPVSN-PDGP-----LDH 455
N +RC P +Y CD YGL V E +++ G VP++ D P +
Sbjct: 414 NAVRC--SHYPNHPLWYTLCDRYGLYVVDE----ANIETHGMVPMNRLTDDPRWLPAMSE 467
Query: 456 DLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ + RD RNHPS+ +W G E
Sbjct: 468 RVTRMVQRD-----RNHPSVIIWSLGTE 490
>pdb|1YQ2|A Chain A, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|B Chain B, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|C Chain C, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|D Chain D, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|E Chain E, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
pdb|1YQ2|F Chain F, Beta-Galactosidase From Arthrobacter Sp. C2-2 (Isoenzyme
C2- 2-1)
Length = 1024
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 100 SENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVH 156
S L L F + +V++NGQ+ + G DV+D L G NLL V VH
Sbjct: 135 STTAALTLRFDGVESRYKVWVNGQEIGVGSGSRLAQEFDVSDALRA-GSNLLVVRVH 190
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 53/150 (35%), Gaps = 23/150 (15%)
Query: 344 FGFRKIESHIDNATGGRLFKVNGQPIFIRGGNW--ILSDGLLRLSKKRYKTDIKFHADMN 401
GFR + D F VNG+ + G N D + + D+ N
Sbjct: 309 LGFRTVRIVGDQ------FLVNGRRVVFHGVNRHETHPDRGRVFDEAGAREDLALMKRFN 362
Query: 402 MNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVD------GRGVPVSNP-DGPLD 454
+N IR P D G FW+ + D G V NP D P
Sbjct: 363 VNAIRT--SHYPPHPRLLDLADEMG------FWVILECDLETHGFEAGGWVENPSDVPAW 414
Query: 455 HDLFMLCARDTVKLLRNHPSLALWVGGNEQ 484
D + TV+ +NHPS+ +W GNE
Sbjct: 415 RDALVDRMERTVERDKNHPSIVMWSLGNES 444
>pdb|3K4A|A Chain A, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
pdb|3K4A|B Chain B, Crystal Structure Of Selenomethionine Substituted E. Coli
Beta- Glucuronidase
Length = 605
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 96/277 (34%), Gaps = 52/277 (18%)
Query: 237 SSFFDNYTRVYLHASTELENR-STWVAECSLSIQVTTD----------LEGGVCLVEHLQ 285
S F D + +H S L +TWV + ++ V D + G VE
Sbjct: 161 SYFHDFFNYAGIHRSVXLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRD 220
Query: 286 TQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLFG 345
++ G Q T L P+LW P G G Y + V K E D++ G
Sbjct: 221 ADQQVVATG---QGTSGTLQVVNPHLWQP-GEG----YLYELCVTAKSQTECDIYPLRVG 272
Query: 346 FRKIESHIDNATGGRLFKVNGQPIFIRG-GNWILSDGLLRLSKKRYKTDIKFHADMNMNM 404
R + A G F +N +P + G G +D L K + + H +
Sbjct: 273 IRSV------AVKGEQFLINHKPFYFTGFGRHEDAD----LRGKGFDNVLXVHD----HA 318
Query: 405 IRCWGGGLAERPEFYHYC-------DIYGLLVWQEFWITGDVDGRGVPVSNPDGPLD--- 454
+ W G + R Y Y D +G++V E G G+ + P +
Sbjct: 319 LXDWIGANSYRTSHYPYAEEXLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYS 378
Query: 455 --------HDLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ ++ + +NHPS+ W NE
Sbjct: 379 EEAVNGETQQAHLQAIKELIARDKNHPSVVXWSIANE 415
>pdb|3LPF|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPF|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
1-((6,7-Dimethyl-2-Oxo-1,
2-Dihydroquinolin-3-Yl)methyl)-1-
(2-Hydroxyethyl)-3-(3-Methoxyphenyl)thiourea
pdb|3LPG|A Chain A, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
pdb|3LPG|B Chain B, Structure Of E. Coli Beta-Glucuronidase Bound With A
Novel, Potent Inhibitor
3-(2-Fluorophenyl)-1-(2-Hydroxyethyl)-1-((6-Methyl-2-
Oxo-1, 2-Dihydroquinolin-3-Yl)methyl)urea
Length = 605
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 96/277 (34%), Gaps = 52/277 (18%)
Query: 237 SSFFDNYTRVYLHASTELENR-STWVAECSLSIQVTTD----------LEGGVCLVEHLQ 285
S F D + +H S L +TWV + ++ V D + G VE
Sbjct: 161 SYFHDFFNYAGIHRSVXLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRD 220
Query: 286 TQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLFG 345
++ G Q T L P+LW P G G Y + V K E D++ G
Sbjct: 221 ADQQVVATG---QGTSGTLQVVNPHLWQP-GEG----YLYELCVTAKSQTECDIYPLRVG 272
Query: 346 FRKIESHIDNATGGRLFKVNGQPIFIRG-GNWILSDGLLRLSKKRYKTDIKFHADMNMNM 404
R + A G F +N +P + G G +D L K + + H +
Sbjct: 273 IRSV------AVKGEQFLINHKPFYFTGFGRHEDAD----LRGKGFDNVLXVHD----HA 318
Query: 405 IRCWGGGLAERPEFYHYC-------DIYGLLVWQEFWITGDVDGRGVPVSNPDGPLD--- 454
+ W G + R Y Y D +G++V E G G+ + P +
Sbjct: 319 LXDWIGANSYRTSHYPYAEEXLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYS 378
Query: 455 --------HDLFMLCARDTVKLLRNHPSLALWVGGNE 483
+ ++ + +NHPS+ W NE
Sbjct: 379 EEAVNGETQQAHLQAIKELIARDKNHPSVVXWSIANE 415
>pdb|3A7Q|A Chain A, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 725
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 807 WLHLPGGDYKLLEPYRKKNIPLKLTSQIFIKGST-------------------YEVEMQV 847
W PGG+ L PY K P + ++ +F+ +E+ +
Sbjct: 26 WFFYPGGNIGLYCPYSSKGAPEEDSAMVFVSNEVGEHSITTRDLSVNENTIIQFEINVGC 85
Query: 848 HNRSKKQDPKRLTYKNNF 865
S DP RL + +F
Sbjct: 86 STDSSSADPVRLEFSRDF 103
>pdb|2E26|A Chain A, Crystal Structure Of Two Repeat Fragment Of Reelin
Length = 725
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 807 WLHLPGGDYKLLEPYRKKNIPLKLTSQIFIKGST-------------------YEVEMQV 847
W PGG+ L PY K P + ++ +F+ +E+ +
Sbjct: 26 WFFYPGGNIGLYCPYSSKGAPEEDSAMVFVSNEVGEHSITTRDLSVNENTIIQFEINVGC 85
Query: 848 HNRSKKQDPKRLTYKNNF 865
S DP RL + +F
Sbjct: 86 STDSSSADPVRLEFSRDF 103
>pdb|3VUP|A Chain A, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
pdb|3VUP|B Chain B, Beta-1,4-Mannanase From The Common Sea Hare Aplysia
Kurodai
Length = 351
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 352 HIDNATGGRLFKVNGQPIFIRGGN--WI-----LSDGLLRLSKKRYKTDIKFHADMNMNM 404
HI N F +NGQ +F+ GGN W+ DG + +K R + + K D N
Sbjct: 3 HIQNGH----FVLNGQRVFLSGGNLPWMSYAYDFGDGQWQRNKNRIEPEFKKLHDAGGNS 58
Query: 405 IRCW 408
+R W
Sbjct: 59 MRLW 62
>pdb|2POK|A Chain A, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
pdb|2POK|B Chain B, Crystal Structure Of A M20 Family Metallo Peptidase From
Streptococcus Pneumoniae
Length = 481
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 845 MQVHNRSKKQDPKRLTYKNNFTTVPVDGD 873
+ H +S + D K L + N++ TVP DGD
Sbjct: 95 VMAHFKSSRPDAKTLIFYNHYDTVPADGD 123
>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
Methanobacterium Thermoautotrophicum
Length = 208
Score = 30.0 bits (66), Expect = 6.6, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 38 PTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIAD 81
P+G A ME ++PG L +N+ +PD G + + + + D
Sbjct: 80 PSGDAMELMERILPGPYTVVLERNELIPDVITGGSSRVGIRVPD 123
>pdb|2FON|A Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|B Chain B, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
pdb|2FON|C Chain C, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase
From Lycopersicon Esculentum (Tomato)
Length = 683
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 14/76 (18%)
Query: 288 HLSISPGAHVQYTF-PQ---LFFYKPNL----WWPNGMGKQSLYTV---RISVDVKGYGE 336
H S G TF PQ + P L WWP G+GK S + V R+ D K YG
Sbjct: 161 HGSNVQGLETTATFDPQTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITDGKDYGV 220
Query: 337 SDLWSHLFGFRKIESH 352
+ L R +E H
Sbjct: 221 NGFIVQL---RSLEDH 233
>pdb|2NYA|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
pdb|2NYA|F Chain F, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
Length = 792
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 7/157 (4%)
Query: 749 DGACPYYKVTEKLSV---PPKKVVSIAEMKYPKTKNPKPVYFLLLKLYNMSDY---GIIS 802
+G PY K E P K V A P + P Y L L + ++ G ++
Sbjct: 636 EGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMT 695
Query: 803 RNFYWLHLPGGDYKL-LEPYRKKNIPLKLTSQIFIKGSTYEVEMQVHNRSKKQDPKRLTY 861
R LH + L + P K L+ ++ + EV V R + + P+ L Y
Sbjct: 696 RRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVY 755
Query: 862 KNNFTTVPVDGDFNMASTEPVNSATEEKQEAGLFRRI 898
F + + +T+P++ T+ K+ A ++
Sbjct: 756 MPFFDAAQLVNKLTLDATDPLSKETDFKKCAVKLEKV 792
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,670,630
Number of Sequences: 62578
Number of extensions: 1659624
Number of successful extensions: 3344
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3203
Number of HSP's gapped (non-prelim): 97
length of query: 992
length of database: 14,973,337
effective HSP length: 108
effective length of query: 884
effective length of database: 8,214,913
effective search space: 7261983092
effective search space used: 7261983092
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)