Query 045314
Match_columns 992
No_of_seqs 472 out of 2350
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:59:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045314.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045314hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2230 Predicted beta-mannosi 100.0 4.2E-94 9.1E-99 789.5 49.8 751 9-877 21-833 (867)
2 PRK10340 ebgA cryptic beta-D-g 100.0 1.5E-71 3.2E-76 700.7 62.1 613 7-808 38-699 (1021)
3 COG3250 LacZ Beta-galactosidas 100.0 4.6E-70 1E-74 659.2 43.6 610 8-722 10-639 (808)
4 PRK09525 lacZ beta-D-galactosi 100.0 1.3E-67 2.7E-72 663.2 64.7 628 8-808 50-726 (1027)
5 PRK10150 beta-D-glucuronidase; 100.0 6.2E-69 1.3E-73 652.4 50.6 545 6-716 8-596 (604)
6 PF02836 Glyco_hydro_2_C: Glyc 100.0 1.1E-32 2.3E-37 307.6 9.4 273 359-716 5-297 (298)
7 PF02837 Glyco_hydro_2_N: Glyc 99.9 3E-24 6.4E-29 219.1 12.3 165 7-211 1-167 (167)
8 KOG2024 Beta-Glucuronidase GUS 99.7 1.1E-17 2.5E-22 172.6 14.0 205 88-368 89-297 (297)
9 PF00703 Glyco_hydro_2: Glycos 99.4 7.8E-12 1.7E-16 117.7 16.0 104 234-347 7-110 (110)
10 PF03198 Glyco_hydro_72: Gluca 98.4 1.3E-06 2.9E-11 95.3 10.7 119 359-487 15-148 (314)
11 PF00150 Cellulase: Cellulase 98.1 1.8E-05 4E-10 87.2 10.6 116 364-487 3-134 (281)
12 COG3250 LacZ Beta-galactosidas 97.9 7.9E-05 1.7E-09 92.6 13.0 114 91-218 85-200 (808)
13 COG1874 LacA Beta-galactosidas 97.8 0.00012 2.6E-09 88.7 11.3 122 359-486 5-163 (673)
14 PLN03059 beta-galactosidase; P 97.5 0.0011 2.4E-08 81.8 15.0 123 359-485 34-188 (840)
15 PF02449 Glyco_hydro_42: Beta- 97.3 0.00024 5.3E-09 82.2 5.3 102 385-486 7-140 (374)
16 PF14488 DUF4434: Domain of un 97.1 0.0028 6.1E-08 64.6 10.1 97 384-487 16-133 (166)
17 PF01301 Glyco_hydro_35: Glyco 96.9 0.0021 4.6E-08 72.6 8.2 68 362-433 2-83 (319)
18 PF13364 BetaGal_dom4_5: Beta- 96.6 0.014 3.1E-07 55.4 9.5 68 88-157 36-107 (111)
19 COG3934 Endo-beta-mannanase [C 96.4 0.0015 3.2E-08 74.4 1.7 138 384-542 22-190 (587)
20 PLN03059 beta-galactosidase; P 96.2 0.023 5E-07 70.5 10.6 69 89-158 472-547 (840)
21 PF08531 Bac_rhamnosid_N: Alph 95.5 0.026 5.6E-07 58.0 6.3 53 104-158 5-66 (172)
22 PF13204 DUF4038: Protein of u 94.7 0.1 2.2E-06 58.3 8.4 116 360-484 3-156 (289)
23 KOG0496 Beta-galactosidase [Ca 93.7 0.39 8.4E-06 57.7 10.8 69 359-431 24-106 (649)
24 smart00633 Glyco_10 Glycosyl h 93.2 0.23 5E-06 54.4 7.6 53 654-708 199-254 (254)
25 PF12876 Cellulase-like: Sugar 91.3 0.15 3.2E-06 46.3 2.6 63 465-537 1-63 (88)
26 TIGR03356 BGL beta-galactosida 86.3 2 4.4E-05 50.7 8.0 93 386-485 52-163 (427)
27 COG2730 BglC Endoglucanase [Ca 86.1 4.9 0.00011 47.3 11.1 96 391-486 76-193 (407)
28 KOG0496 Beta-galactosidase [Ca 86.1 3.4 7.4E-05 50.0 9.6 54 104-158 434-490 (649)
29 PRK13511 6-phospho-beta-galact 78.3 7.9 0.00017 46.4 9.0 92 386-485 52-162 (469)
30 COG3534 AbfA Alpha-L-arabinofu 77.8 9.8 0.00021 44.2 8.9 45 386-430 46-122 (501)
31 PF00331 Glyco_hydro_10: Glyco 76.2 2.3 5E-05 48.2 3.6 60 650-711 252-319 (320)
32 PRK15014 6-phospho-beta-glucos 75.4 4 8.6E-05 48.9 5.4 92 387-485 68-180 (477)
33 PF07745 Glyco_hydro_53: Glyco 72.4 15 0.00032 41.8 8.7 95 391-485 27-136 (332)
34 TIGR01233 lacG 6-phospho-beta- 70.0 17 0.00036 43.6 8.9 92 386-485 51-161 (467)
35 PF11797 DUF3324: Protein of u 64.7 60 0.0013 32.1 10.2 70 724-794 46-116 (140)
36 PF14683 CBM-like: Polysacchar 62.3 14 0.00031 37.7 5.4 65 92-157 66-152 (167)
37 PRK09852 cryptic 6-phospho-bet 61.5 19 0.00041 43.2 7.2 93 386-485 69-182 (474)
38 PF03170 BcsB: Bacterial cellu 60.8 21 0.00046 44.2 7.7 64 94-158 329-410 (605)
39 PF06030 DUF916: Bacterial pro 58.6 16 0.00034 35.3 4.8 35 954-988 87-121 (121)
40 PLN02849 beta-glucosidase 56.9 27 0.00057 42.3 7.3 93 386-485 77-189 (503)
41 COG5309 Exo-beta-1,3-glucanase 55.9 67 0.0015 35.2 9.2 86 386-487 61-146 (305)
42 PRK09593 arb 6-phospho-beta-gl 55.2 42 0.00091 40.4 8.6 93 386-485 71-184 (478)
43 PLN02998 beta-glucosidase 53.5 32 0.00068 41.6 7.2 93 386-485 80-192 (497)
44 COG4885 Uncharacterized protei 53.2 1.1E+02 0.0023 33.2 10.0 75 724-804 163-239 (312)
45 PLN02814 beta-glucosidase 51.9 43 0.00094 40.5 8.0 93 386-485 75-187 (504)
46 COG2723 BglB Beta-glucosidase/ 51.1 20 0.00042 42.4 4.8 92 387-485 58-170 (460)
47 TIGR00542 hxl6Piso_put hexulos 48.1 76 0.0016 35.0 8.8 79 387-483 93-186 (279)
48 COG2876 AroA 3-deoxy-D-arabino 47.2 51 0.0011 36.0 6.7 62 365-435 43-118 (286)
49 PRK09589 celA 6-phospho-beta-g 47.2 71 0.0015 38.4 8.8 93 386-485 65-178 (476)
50 PF08308 PEGA: PEGA domain; I 46.1 30 0.00066 29.5 4.1 40 107-155 4-43 (71)
51 PF07705 CARDB: CARDB; InterP 45.5 73 0.0016 28.6 6.9 65 905-984 18-87 (101)
52 TIGR03079 CH4_NH3mon_ox_B meth 44.8 55 0.0012 37.2 6.7 17 954-970 338-354 (399)
53 PF00232 Glyco_hydro_1: Glycos 44.3 57 0.0012 39.0 7.4 92 386-484 56-167 (455)
54 PF03170 BcsB: Bacterial cellu 42.9 56 0.0012 40.5 7.4 63 94-157 34-110 (605)
55 PF06159 DUF974: Protein of un 41.6 2.7E+02 0.0058 30.4 11.5 111 725-853 19-149 (249)
56 COG0296 GlgB 1,4-alpha-glucan 40.7 41 0.00089 41.5 5.5 48 385-434 162-235 (628)
57 TIGR03234 OH-pyruv-isom hydrox 40.1 1.4E+02 0.0031 32.2 9.3 86 387-485 83-183 (254)
58 PF14874 PapD-like: Flagellar- 39.2 2.3E+02 0.005 25.8 9.2 15 955-969 58-72 (102)
59 PF12690 BsuPI: Intracellular 38.0 2.5E+02 0.0055 25.1 8.8 31 940-972 34-72 (82)
60 PF03659 Glyco_hydro_71: Glyco 38.0 96 0.0021 36.3 7.8 77 385-477 14-95 (386)
61 PF04744 Monooxygenase_B: Mono 36.4 91 0.002 35.6 6.9 21 834-854 258-278 (381)
62 PF06280 DUF1034: Fn3-like dom 34.8 42 0.00092 31.6 3.5 26 947-972 57-82 (112)
63 PRK13397 3-deoxy-7-phosphohept 34.7 95 0.0021 34.0 6.6 58 368-434 16-87 (250)
64 PF11008 DUF2846: Protein of u 34.5 1.2E+02 0.0026 28.8 6.7 34 113-153 40-74 (117)
65 PF07691 PA14: PA14 domain; I 34.2 65 0.0014 31.3 5.0 65 91-158 50-121 (145)
66 PRK11114 cellulose synthase re 32.4 1E+02 0.0023 39.3 7.5 64 94-158 86-164 (756)
67 PF13598 DUF4139: Domain of un 31.6 5.1E+02 0.011 29.0 12.3 24 286-310 294-317 (317)
68 PF11611 DUF4352: Domain of un 30.3 1.2E+02 0.0025 28.6 5.9 62 912-980 42-112 (123)
69 cd00019 AP2Ec AP endonuclease 30.0 1.5E+02 0.0032 32.6 7.5 83 386-482 83-179 (279)
70 PF09624 DUF2393: Protein of u 29.8 3.3E+02 0.0071 27.0 9.2 27 956-982 119-146 (149)
71 PF14310 Fn3-like: Fibronectin 29.2 52 0.0011 28.3 2.9 17 954-970 27-43 (71)
72 PF11614 FixG_C: IG-like fold 29.1 4.9E+02 0.011 24.5 10.3 82 723-808 34-116 (118)
73 smart00642 Aamy Alpha-amylase 29.0 1.8E+02 0.004 29.6 7.3 66 369-436 2-93 (166)
74 PF00927 Transglut_C: Transglu 28.9 4.1E+02 0.0089 24.5 9.2 26 947-972 53-78 (107)
75 PF07905 PucR: Purine cataboli 28.2 1.3E+02 0.0029 28.8 5.8 46 386-431 57-104 (123)
76 smart00518 AP2Ec AP endonuclea 28.1 2.1E+02 0.0046 31.2 8.2 86 385-484 81-178 (273)
77 PF06230 DUF1009: Protein of u 27.3 77 0.0017 33.8 4.2 39 392-430 173-213 (214)
78 COG1038 PycA Pyruvate carboxyl 27.1 82 0.0018 39.5 4.8 85 341-431 26-110 (1149)
79 PF00345 PapD_N: Pili and flag 26.7 1.9E+02 0.0041 27.4 6.6 59 907-970 15-73 (122)
80 PF11906 DUF3426: Protein of u 26.6 3.7E+02 0.0079 26.5 8.9 72 838-981 67-147 (149)
81 PRK15098 beta-D-glucoside gluc 26.0 1.2E+02 0.0026 38.9 6.4 18 954-971 711-728 (765)
82 KOG0238 3-Methylcrotonyl-CoA c 26.0 1.6E+02 0.0034 35.2 6.6 84 341-431 17-100 (670)
83 PLN02361 alpha-amylase 25.0 1.9E+02 0.0041 34.0 7.3 71 363-436 7-99 (401)
84 PF13752 DUF4165: Domain of un 24.7 6.6E+02 0.014 24.5 10.8 95 707-809 17-118 (124)
85 PF12733 Cadherin-like: Cadher 24.6 1.3E+02 0.0029 26.6 4.8 54 96-158 19-73 (88)
86 PF10633 NPCBM_assoc: NPCBM-as 24.1 1.4E+02 0.003 26.0 4.7 61 905-976 4-66 (78)
87 PRK13210 putative L-xylulose 5 23.8 3.6E+02 0.0077 29.5 9.1 48 387-434 93-154 (284)
88 PF00703 Glyco_hydro_2: Glycos 23.3 5.4E+02 0.012 23.0 11.1 72 728-803 26-102 (110)
89 cd00928 Cyt_c_Oxidase_VIIa Cyt 22.9 40 0.00087 27.8 0.9 13 363-375 14-26 (55)
90 PF04566 RNA_pol_Rpb2_4: RNA p 22.9 69 0.0015 27.2 2.4 13 118-130 1-13 (63)
91 PF08220 HTH_DeoR: DeoR-like h 22.9 98 0.0021 25.5 3.2 27 384-411 25-51 (57)
92 PF00635 Motile_Sperm: MSP (Ma 22.9 2.4E+02 0.0052 25.9 6.4 47 912-972 25-71 (109)
93 PF07550 DUF1533: Protein of u 22.5 1.5E+02 0.0032 25.2 4.4 42 115-156 8-56 (65)
94 PRK12595 bifunctional 3-deoxy- 22.3 2.1E+02 0.0045 33.2 6.9 60 366-434 117-190 (360)
95 smart00758 PA14 domain in bact 22.3 2.4E+02 0.0052 27.1 6.5 66 89-157 46-112 (136)
96 smart00481 POLIIIAc DNA polyme 21.8 1.9E+02 0.0041 24.2 5.0 44 390-433 17-61 (67)
97 PF02638 DUF187: Glycosyl hydr 21.4 2.1E+02 0.0046 32.3 6.7 46 386-431 17-88 (311)
98 TIGR02567 YscW type III secret 20.7 4.6E+02 0.0099 25.6 7.7 65 738-808 37-103 (124)
99 PF14324 PINIT: PINIT domain; 20.2 77 0.0017 31.5 2.5 41 115-157 82-131 (144)
No 1
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-94 Score=789.52 Aligned_cols=751 Identities=20% Similarity=0.314 Sum_probs=518.4
Q ss_pred ceeecCCCceEEecCCcCCCCcccccCCCCCCCCCCCeeccCCchHHHhHHhCCCCCCCCCcccccccccccccCCceee
Q 045314 9 GKTKLDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYT 88 (992)
Q Consensus 9 ~~~~L~~~W~f~~~~~~~~~g~~ls~~~~~~~d~~~W~~a~VPgtv~~~L~~~g~i~dP~~g~N~~~~~~~~~~~~~~~~ 88 (992)
..+.|.|+|.|..+.. ..+ .+.+|||+++.+|.+.|+|.||+||.|.....|+++++|.
T Consensus 21 ~t~~l~gnw~~~~~n~-t~~-----------------~~g~vpg~i~s~l~~~gii~~~~~~~n~ln~kwia~d~wt--- 79 (867)
T KOG2230|consen 21 NTLVLAGNWEFSSSNK-TVN-----------------GTGTVPGDIYSDLYASGIIDNPLFGENHLNLKWIAEDDWT--- 79 (867)
T ss_pred eeEEEecceEEecCCC-cee-----------------cCCCCCchHhHHHHhcccccCccccccccceeEEeccCcc---
Confidence 3567999999987653 111 2468999999999999999999999999999999998765
Q ss_pred EEEEEEEEcc-CCCCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEEECCCC-------
Q 045314 89 FWFFTTFQCK-LSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDH------- 160 (992)
Q Consensus 89 ~WYrr~F~vp-~~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v~~~~~------- 160 (992)
|.|+|.+= ..+-..++|.+||||+.|+||+||++|+++.|||.|++||||+.+. ++|.|.+++.+...
T Consensus 80 --ysr~frl~dl~~~~~~~l~ie~vdtia~v~~n~~~v~~s~n~f~~y~~~vt~ii~--~~n~i~~~f~ssv~yA~~~~~ 155 (867)
T KOG2230|consen 80 --YSRKFRLIDLDDTVGAFLEIESVDTIATVYVNGQKVLHSRNQFLPYHVNVTDIIA--GENDITIKFKSSVKYAEKRAD 155 (867)
T ss_pred --ceeeeEEEEccccccceEEEeecceeEEEEEccEEEeeccccceeEEEeEEEEec--CCcceEEEeehhHHHHHHHHH
Confidence 47888873 3456789999999999999999999999999999999999999887 68999999976521
Q ss_pred ---CCCCCCCCC---CCCccccccccccCcccCCcccCCCCCCCcccccceEEEEEcceeEecCCccccccCcceecCcc
Q 045314 161 ---PGTIPPEGG---QGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPH 234 (992)
Q Consensus 161 ---~~~~p~~~~---~~~~~~~~~~~~~~~~~GWDW~p~~~~~~~GIwr~V~L~~~~~v~i~d~~~~~~~~~~v~~~~~~ 234 (992)
...+||..+ +.|+....-.+|+||+|.|||+|..| +.|||.+|+|+.+.-.+|.++ .
T Consensus 156 ~~~k~svPPdC~p~iyhGECH~NfiRK~Q~SFsWDWGPsfP--t~GI~k~v~i~iY~~~~~~~f---------------~ 218 (867)
T KOG2230|consen 156 EYKKHSLPPDCNPDIYHGECHQNFIRKAQYSFAWDWGPSFP--TVGIPSTITINIYRGQYFHDF---------------N 218 (867)
T ss_pred hhhccCCCCCCCchhhccchHHHHHHHhhcceecccCCCCc--cCCCCcceEEEEEeeeEEEee---------------c
Confidence 223444332 12333233345899999999999984 899999999999999999887 3
Q ss_pred eeeeeecCcceEEEEEEEEEEeCCcceeEEEEEEEEEEeCCCCEEEEeeeEEEEEEeCCCCeEEEEeeeee-cCCCcccC
Q 045314 235 LVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFPQLF-FYKPNLWW 313 (992)
Q Consensus 235 v~~~~~~~~~~a~v~v~~~v~n~~~~~~~~~l~~~v~~~~~g~~~~~~~~~~~~v~l~~~~~~~~~~~~l~-i~~P~LWw 313 (992)
+.+....+ .-.+.++.+.... ..+ +...+.....+.. .+-.+.|++++... .++ +. ..+|..||
T Consensus 219 ~~~~~~~g--~w~~~~eftf~~~---~~~--i~~~v~ip~l~~~------~~Y~i~Lq~~k~i~-~l~-i~~~~~~e~ww 283 (867)
T KOG2230|consen 219 WKTRFAHG--KWKVAFEFTFHYG---ART--IEYSVQIPELGIK------ESYRLSLQTSKNIM-SLS-IPMEHEPERWW 283 (867)
T ss_pred eeeeeecc--eeeEEEEEecccc---ccc--cceEEEEecccce------EEEEEEecccccee-eec-ccccccccccC
Confidence 33222111 2222222222111 122 2222322222321 13456777755432 221 22 36889999
Q ss_pred CCCCCCCccEEEEEEEEECCCeeeEeEeeeEEEEEEEEeeecCC----CceEEEECCEeEEEeeeeecCCCCcC-CCCHH
Q 045314 314 PNGMGKQSLYTVRISVDVKGYGESDLWSHLFGFRKIESHIDNAT----GGRLFKVNGQPIFIRGGNWILSDGLL-RLSKK 388 (992)
Q Consensus 314 P~g~G~P~LY~l~v~l~~~g~~~~D~~~~~fG~R~v~~~~d~~~----~g~~f~vNG~pi~lrG~n~~p~d~~~-~~~~e 388 (992)
|+|+|+|.||.+++.. +| . ..++++|||++++.+++.+ ..++|++||.|+|+||+||+|.++|. |.+-|
T Consensus 284 p~g~g~q~~y~~~v~~--gg--~--~~ekki~frtvelv~~p~kp~~g~nfyfkin~~pvflkg~nwip~s~f~dr~t~~ 357 (867)
T KOG2230|consen 284 PNGMGEQKLYDVVVSM--GG--Q--VKEKKIGFKTVELVQDPKKPEKGRNFYFKINDEPVFLKGTNWIPVSMFRDRENIA 357 (867)
T ss_pred CCCCCcceeEEEEEec--Cc--e--eeeeeeeeEEEEEeecCCCCCCCceeEEEEcCcEEEeecCCccChHHHHhhHHHH
Confidence 9999999999999877 23 2 3345999999999876532 23589999999999999999999998 88999
Q ss_pred HHHHHHHHHHhCCCcEEEccCCCCCCChHHHHHHHHcCcEEEEecccccCCCCCCCCCCCCCCcccHH---HHHHHHHHH
Q 045314 389 RYKTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHD---LFMLCARDT 465 (992)
Q Consensus 389 ~~~~~l~~~k~~g~N~iR~wgGg~~e~~~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~~~~~p~~~~---~~~~~~~~~ 465 (992)
.++..|+.++|+||||||+||||+||+++||++||++|||||||+||+|.+ ||.+.+ ...+|++.+
T Consensus 358 ~~~~LL~Sv~e~~MN~lRVWGGGvYEsd~FY~lad~lGilVWQD~MFACAl-----------YPt~~eFl~sv~eEV~yn 426 (867)
T KOG2230|consen 358 KTEFLLDSVAEVGMNMLRVWGGGVYESDYFYQLADSLGILVWQDMMFACAL-----------YPTNDEFLSSVREEVRYN 426 (867)
T ss_pred HHHHHHHHHHHhCcceEEEecCccccchhHHHHhhhccceehhhhHHHhhc-----------ccCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999754 555433 345688999
Q ss_pred HHHhCCCcEEEEEecCCCCCCccchHHHHHhhc-----ccCcccccccCCCCcccccc-cccCCCCccCCCCceeEeCCC
Q 045314 466 VKLLRNHPSLALWVGGNEQVPPEDINKALKNDL-----KLHPYFKNSNETGNFTEDLS-LSVQDPSQYLDGTRIYIQGSL 539 (992)
Q Consensus 466 v~rlrNHPSIi~W~~gNE~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lDptR~y~~sS~ 539 (992)
+.|+.+|||||+|+++||+ ++++...+ ..++++.+. ..-+. ..+.+....-|++||++.|||
T Consensus 427 ~~Rls~HpSviIfsgNNEN------EaAl~~nWy~~sf~~~~~~~kd------yvlly~~~i~el~l~~~~srPfi~SSP 494 (867)
T KOG2230|consen 427 AMRLSHHPSVIIFSGNNEN------EAALVQNWYGTSFERDRFESKD------YVLLYANVIHELKLVSHSSRPFIVSSP 494 (867)
T ss_pred HHhhccCCeEEEEeCCCcc------HHHHHhhhhcccccccchhhhh------hhHHHHHHHHHHHhhcCCCCCceecCC
Confidence 9999999999999999998 33443322 111221110 00011 112334566899999999999
Q ss_pred CCCCCCCC-CCCCCCCCcccCCCC-ccc--------cccCCCCCccccCCCCCCcHHHHHhcCCCCCCCCcc-----ccc
Q 045314 540 WDGFADGK-GNFTDGPYEIQYPED-FFK--------DSFYQYGFNPEVGSVGMPVAATIRATMPPEGWQIPV-----FKQ 604 (992)
Q Consensus 540 ~~g~~~~~-g~~~~gpy~~~~p~~-~~~--------~~~~~~~F~SE~G~~s~P~~~sl~~~~~~~~w~~~~-----~~~ 604 (992)
..|..... +.....|++.+...- +|+ .-|.++||.||||+||+|..+++.+..+++||.+.. .|+
T Consensus 495 sNG~ete~e~~VS~NP~dn~~GDVHfYdy~~d~W~~~ifp~pRfaSEyG~QS~P~~~t~~~~~~e~Dw~~~sk~~~HRQH 574 (867)
T KOG2230|consen 495 SNGKETEPENYVSSNPQDNQNGDVHFYDYTKDGWDPGIFPRPRFASEYGFQSFPGAYTWQRSKGEDDWLLGSKLITHRQH 574 (867)
T ss_pred CCCcccCccccccCCCccccCCceEeeehhhccCCCCcccCchhhhhcCcccCccHHHHHhccCccchhhccceeeeecc
Confidence 98865433 344556665544332 222 124578999999999999999999999999998741 134
Q ss_pred CCCCcccccCcchhhccccCCCCCCcchhhhhhhcCCCccHHHHHHHHHHhHHHHHHHHHHHhhccCC------CCceEE
Q 045314 605 GSDGYIEEVPNPIWKYHKYIPYSKPGKVHDQILLYGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMW------SKYTGV 678 (992)
Q Consensus 605 ~~~~~~~~~~~~~w~~H~~~~~~~~~~~~~~~~~yg~p~~l~df~~~sQ~~q~e~~ra~~Ea~r~~~~------~~~~G~ 678 (992)
|+.|+.... ..-..|--.|++.. .--..+.-+|.||++||.|+|.+.|.|||-+- ..+||+
T Consensus 575 HpgGn~~~l--~~v~~HlplP~s~~-----------~~~~~k~i~YfsQV~Qa~a~KteTe~YRr~R~t~~~~~g~tMgA 641 (867)
T KOG2230|consen 575 HPGGNVPVL--ALVERHLPLPFSEN-----------ENYATKLIAYFSQVAQAMATKTETELYRRLRDTPHRTLGNTMGA 641 (867)
T ss_pred CCCCcchHH--HHHHhcCCCCCCCC-----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhccchhe
Confidence 444432100 00012222222210 00135566799999999999999999997321 257999
Q ss_pred EEecccCCccccccceeccCCCCccccceeeccccceEEE--eecCceEEEEEeCCCccccceEEEEEEEEccCCce--e
Q 045314 679 LIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQ--LNLASYFIEVVNTTSQELSDVAIEASVWDLDGACP--Y 754 (992)
Q Consensus 679 l~WqlNd~WP~~~W~~~Dyy~~pk~~yy~~k~a~~pv~v~--~~~~~~~v~vvN~~~~~~~~~~l~v~~~d~~g~~~--~ 754 (992)
|||||||.|-.-+|+.+|||++||-++|.++++++|+.+. .+..+..|+++||-.... ..+|.++..+.+..+- .
T Consensus 642 lYWQLNDvW~APsWssidf~gnWKm~hyea~~ffan~~~~~f~~e~~f~v~~~~d~~~l~-s~tl~vq~~sW~~~L~P~~ 720 (867)
T KOG2230|consen 642 LYWQLNDVWVAPSWSSIDFYGNWKMDHYEANRFFANVAVYSFADETDFKVFLLNDPVHLW-SQTLPVQSTSWDVTLRPNG 720 (867)
T ss_pred eeeeeccEEecCcceeeeccCcccccHHHHHhhhccccccccccccceEEEecCchhhhh-heeeeeEEeeccccccccc
Confidence 9999999999999999999999999999999999998876 355688999999965555 4588888877665321 1
Q ss_pred eEEeEEEEe-CCCCeEEEEeeecCCCCCCCceEEEEEEEEEcCCCeEEeeeeeeccCCCCCcccc-------ccccccCc
Q 045314 755 YKVTEKLSV-PPKKVVSIAEMKYPKTKNPKPVYFLLLKLYNMSDYGIISRNFYWLHLPGGDYKLL-------EPYRKKNI 826 (992)
Q Consensus 755 ~~~~~~~~i-~~~~~~~v~~~~~~~~~~~~~~~~l~l~L~d~~~g~~~s~N~yw~~~~~~~~~~l-------~~~~~~~~ 826 (992)
.+ ...+.+ +.++. ++. +...|+.+.|.- .+.++++..|..+.-.++...| -.-+ +..
T Consensus 721 ~~-~~~i~~v~~g~~-ev~----------~t~~~~s~~lrr--~~~~~~~t~~~ss~i~~~~~il~P~~~Fei~~~-~~g 785 (867)
T KOG2230|consen 721 VQ-DKVIAIVDLGQG-EVT----------RTNAFLSLQLRR--GQDVISRTHFFSSSIAGAVGILDPGLEFEIASR-TTG 785 (867)
T ss_pred cc-ceeeeeeccCCc-eeE----------eccchHHHHHhh--ccceeeeEEeccccccccccccCCCcEEEeccc-ccc
Confidence 11 111111 11111 111 111233333321 3455555555544322222211 1111 223
Q ss_pred ccceEEEEEEeCCEEEEEEEEEcCCCCCCcccccccccccccCCCCCCCcC
Q 045314 827 PLKLTSQIFIKGSTYEVEMQVHNRSKKQDPKRLTYKNNFTTVPVDGDFNMA 877 (992)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 877 (992)
+++|.......++.+.++++.+..+.+. .++-+.-.+-.++||=|.||
T Consensus 786 ~~qi~~~~~v~~~~~~~~i~t~rvapFv---wl~~~kp~~g~fSdNGF~mt 833 (867)
T KOG2230|consen 786 DVQILNTTNVVRNSVSISIQTKRVAPFV---WLELLKPYRGTFSDNGFMMT 833 (867)
T ss_pred ceeeeeeeeecccEEEEEEEeccccceE---EEEecCcccceEccCceEee
Confidence 4556666667788888899988887643 23333335556778878877
No 2
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=100.00 E-value=1.5e-71 Score=700.65 Aligned_cols=613 Identities=20% Similarity=0.233 Sum_probs=412.8
Q ss_pred ccceeecCCCceEEecCCcCCCCcccccCCCCCCCCCCCeeccCCchHHHhHHh-----CC----CCCCCCCcccccccc
Q 045314 7 SIGKTKLDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVK-----NK----AVPDPFYGLENEMIL 77 (992)
Q Consensus 7 ~~~~~~L~~~W~f~~~~~~~~~g~~ls~~~~~~~d~~~W~~a~VPgtv~~~L~~-----~g----~i~dP~~g~N~~~~~ 77 (992)
++..++|||.|+|+..+......+... .+.+ ++|.++.|||+|...-.. +. .+++||...+
T Consensus 38 ~~~~~~LnG~W~F~~~~~~~~~~~~f~---~~~~--~~W~~I~VP~~w~~~g~~~~~y~n~~y~~~~~~P~vp~~----- 107 (1021)
T PRK10340 38 SSLFLLLSGQWNFHFFDHPLYVPEAFT---SELM--SDWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSD----- 107 (1021)
T ss_pred CCceeecCcceeEEEeCCccccccccc---cCCC--CCCcEeecCCChhhcCCCCcccccccccCCCCCCCCCCc-----
Confidence 345689999999997654331111111 1222 679999999999742110 00 0122332211
Q ss_pred cccccCCceeeEEEEEEEEccC-CCCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEEE
Q 045314 78 DIADSGREYYTFWFFTTFQCKL-SENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVH 156 (992)
Q Consensus 78 ~~~~~~~~~~~~WYrr~F~vp~-~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v~ 156 (992)
..++||||+|++|+ +++++++|+||||++.|+|||||++||.|.|+|+||+||||++|++ |+|+|+|+|+
T Consensus 108 --------n~~g~Yrr~F~lp~~~~gkrv~L~FeGV~s~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~-G~N~LaV~V~ 178 (1021)
T PRK10340 108 --------NPTGAYQRTFTLSDGWQGKQTIIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKT-GDNLLCVRVM 178 (1021)
T ss_pred --------CCeEEEEEEEEeCcccccCcEEEEECccceEEEEEECCEEeccccCCCccEEEEcchhhCC-CccEEEEEEE
Confidence 12689999999987 7899999999999999999999999999999999999999999998 6899999998
Q ss_pred CCCCCCCCCCCCCCCCccccccccccCcccCCc-ccCCCCCCCcccccceEEEEEcceeEecCCccccccCcceecCcce
Q 045314 157 PPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWD-WIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHL 235 (992)
Q Consensus 157 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~GWD-W~p~~~~~~~GIwr~V~L~~~~~v~i~d~~~~~~~~~~v~~~~~~v 235 (992)
+..+.. |....| | ..+||||+|+|+++++++|.|+ ++
T Consensus 179 ~~~d~s---------------------~le~qd~w------~~sGI~R~V~L~~~p~~~I~d~---------------~v 216 (1021)
T PRK10340 179 QWADST---------------------YLEDQDMW------WLAGIFRDVYLVGKPLTHINDF---------------TV 216 (1021)
T ss_pred ecCCCC---------------------ccccCCcc------ccccccceEEEEEeCCceEEee---------------EE
Confidence 643211 111112 3 3699999999999999999998 66
Q ss_pred eeeeecCcceEEEEEEEEEEeCCcceeEEEEEEEEEEeCCCCEEEEeeeEEEEEEeCCCCeEEEEeeeeecCCCcccCCC
Q 045314 236 VSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPN 315 (992)
Q Consensus 236 ~~~~~~~~~~a~v~v~~~v~n~~~~~~~~~l~~~v~~~~~g~~~~~~~~~~~~v~l~~~~~~~~~~~~l~i~~P~LWwP~ 315 (992)
.+.+..+...+.|.|++++.|.+......++++.+. ..+..+. .. ....+.+.+....+ + .+.|++|+||||.
T Consensus 217 ~t~l~~~~~~a~l~v~v~~~n~~~~~~~~~v~~~l~--d~~~~v~-~~-~~~~~~~~~~~~~~--~-~~~i~~p~lWs~e 289 (1021)
T PRK10340 217 RTDFDEDYCDATLSCEVVLENLAASPVVTTLEYTLF--DGERVVH-SS-AIDHLAIEKLTSAS--F-AFTVEQPQQWSAE 289 (1021)
T ss_pred EeeccCccCceEEEEEEEEecCCCCccceEEEEEEE--CCCceEE-EE-eeceeecCCCceEE--E-EEEcCCCCcCCCC
Confidence 665555556789999999988654433445666665 2333332 11 11223333333333 3 3788999999997
Q ss_pred CCCCCccEEEEEEEEECCCeeeEeEeeeEEEEEEEEeeecCCCceEEEECCEeEEEeeeeecCCCCcC--CCCHHHHHHH
Q 045314 316 GMGKQSLYTVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLL--RLSKKRYKTD 393 (992)
Q Consensus 316 g~G~P~LY~l~v~l~~~g~~~~D~~~~~fG~R~v~~~~d~~~~g~~f~vNG~pi~lrG~n~~p~d~~~--~~~~e~~~~~ 393 (992)
+|+||+|+++|..++++++|+.+.+||||+|++. +..|+|||+||+|||+|+|+.++.. .++++.++++
T Consensus 290 ---~P~LY~l~v~l~~~~g~~~d~~~~~~GfR~iei~------~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~d 360 (1021)
T PRK10340 290 ---SPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVR------DGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKD 360 (1021)
T ss_pred ---CCeeEEEEEEEEcCCCCEEEEEEeeeEEEEEEEE------CCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHH
Confidence 9999999999985544689999999999999984 3479999999999999999888776 4799999999
Q ss_pred HHHHHhCCCcEEEccCCCCCCChHHHHHHHHcCcEEEEecccccCCCCC-CCCCCCCCCcccHHHHHHHHHHHHHHhCCC
Q 045314 394 IKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGR-GVPVSNPDGPLDHDLFMLCARDTVKLLRNH 472 (992)
Q Consensus 394 l~~~k~~g~N~iR~wgGg~~e~~~fydlcDe~GIlVw~e~~~~~~~~~~-g~~~~~~~~p~~~~~~~~~~~~~v~rlrNH 472 (992)
|++||++|+||||++ |++++++|||+|||+|||||+|+++.|..... +.+..-.+.|...+.+++++++||+|+|||
T Consensus 361 l~lmK~~g~NavR~s--HyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~~~p~~~~~~~~~~~~mV~RdrNH 438 (1021)
T PRK10340 361 IQLMKQHNINSVRTA--HYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVDRIVRHIHAQKNH 438 (1021)
T ss_pred HHHHHHCCCCEEEec--CCCCCHHHHHHHHHCCCEEEECCcccccCcccccccccccCCHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999 89999999999999999999999775432100 000000123445567788999999999999
Q ss_pred cEEEEEecCCCCCCccchHHHHHhhcccCcccccccCCCCcccccccccCCCCccCCCCceeEeCCCCCCCCCCCCCCCC
Q 045314 473 PSLALWVGGNEQVPPEDINKALKNDLKLHPYFKNSNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFADGKGNFTD 552 (992)
Q Consensus 473 PSIi~W~~gNE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lDptR~y~~sS~~~g~~~~~g~~~~ 552 (992)
|||++||+|||......+.. +.+.+|++|||||++...... ....+. .
T Consensus 439 PSIi~WslGNE~~~g~~~~~----------------------------~~~~~k~~DptR~v~~~~~~~---~~~~Dv-~ 486 (1021)
T PRK10340 439 PSIIIWSLGNESGYGCNIRA----------------------------MYHAAKALDDTRLVHYEEDRD---AEVVDV-I 486 (1021)
T ss_pred CEEEEEECccCccccHHHHH----------------------------HHHHHHHhCCCceEEeCCCcC---ccccce-e
Confidence 99999999999855433221 123468899999998543110 000000 0
Q ss_pred CCCcccCC--CCccccccCCCCCccccCCCCCCcHHHHHhcCCCCCCCCcccccCCCCcccccCcchhhccccCCCCCCc
Q 045314 553 GPYEIQYP--EDFFKDSFYQYGFNPEVGSVGMPVAATIRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYSKPG 630 (992)
Q Consensus 553 gpy~~~~p--~~~~~~~~~~~~F~SE~G~~s~P~~~sl~~~~~~~~w~~~~~~~~~~~~~~~~~~~~w~~H~~~~~~~~~ 630 (992)
++++-+.. ..+....-.+|-+.+|||- ++. +
T Consensus 487 ~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~h-amg--------------------------------------------n-- 519 (1021)
T PRK10340 487 STMYTRVELMNEFGEYPHPKPRILCEYAH-AMG--------------------------------------------N-- 519 (1021)
T ss_pred ccccCCHHHHHHHHhCCCCCcEEEEchHh-ccC--------------------------------------------C--
Confidence 01100000 0000000012334445441 000 0
Q ss_pred chhhhhhhcCCCccHHHHHHHHHHhHHHHHHHHHHHhhccCCCCceEEEEecccCC---------------------ccc
Q 045314 631 KVHDQILLYGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNP---------------------WTG 689 (992)
Q Consensus 631 ~~~~~~~~yg~p~~l~df~~~sQ~~q~e~~ra~~Ea~r~~~~~~~~G~l~WqlNd~---------------------WP~ 689 (992)
.+.++++|- +.+.+. |...|--+|..-|- ||.
T Consensus 520 ----------~~g~~~~yw---------------~~~~~~--p~l~GgfiW~~~D~~~~~~~~~G~~~~~ygGd~g~~p~ 572 (1021)
T PRK10340 520 ----------GPGGLTEYQ---------------NVFYKH--DCIQGHYVWEWCDHGIQAQDDNGNVWYKYGGDYGDYPN 572 (1021)
T ss_pred ----------CCCCHHHHH---------------HHHHhC--CceeEEeeeecCcccccccCCCCCEEEEECCCCCCCCC
Confidence 112233332 112211 34455555555441 565
Q ss_pred c----ccceeccCCCCccccceeeccccceEEEe-ecCceEEEEEeCCC-ccccceEEEEEEEEccCCceeeEEeEEEEe
Q 045314 690 L----RGQFYDHLLDQTAGFYGCRCAAEPIHVQL-NLASYFIEVVNTTS-QELSDVAIEASVWDLDGACPYYKVTEKLSV 763 (992)
Q Consensus 690 ~----~W~~~Dyy~~pk~~yy~~k~a~~pv~v~~-~~~~~~v~vvN~~~-~~~~~~~l~v~~~d~~g~~~~~~~~~~~~i 763 (992)
- ..+++|-++.||+++|-.|+..+||.+.. +.....|.|.|... ..+.++.+.+++.. +|+++.+......++
T Consensus 573 ~~~f~~~Glv~~dr~p~p~~~e~k~~~~pv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~l~~-dG~~~~~g~~~~~~i 651 (1021)
T PRK10340 573 NYNFCIDGLIYPDQTPGPGLKEYKQVIAPVKIHALDLTRGELKVENKLWFTNLDDYTLHAEVRA-EGETLASGQIKLRDV 651 (1021)
T ss_pred CcCcccceeECCCCCCChhHHHHHHhcceEEEEEecCCCCEEEEEECccCCCccccEEEEEEEE-CCEEEEEeeeccCcc
Confidence 3 46999999999999999999999999975 43456899999764 45677889998765 788876654322378
Q ss_pred CCCCeEEEEeeecCCCCCCCceEEEEEEEEEc------CCCeEEeeeeeec
Q 045314 764 PPKKVVSIAEMKYPKTKNPKPVYFLLLKLYNM------SDYGIISRNFYWL 808 (992)
Q Consensus 764 ~~~~~~~v~~~~~~~~~~~~~~~~l~l~L~d~------~~g~~~s~N~yw~ 808 (992)
+|+++..| +++++. .....+||.+.++-. ..|.+|+.-=+-+
T Consensus 652 ~p~~~~~v-~l~~~~--~~~~e~~l~~~~~~~~~~~wa~~g~~va~~Q~~l 699 (1021)
T PRK10340 652 APNSEAPL-QITLPQ--LDAREAFLNITVTKDSRTRYSEAGHSIATYQFPL 699 (1021)
T ss_pred CCCCceEE-EecCCC--CCCceEEEEEEEEECCCccccCCCcEEEEEEEEe
Confidence 88887665 355552 223467877765421 1366666554444
No 3
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-70 Score=659.15 Aligned_cols=610 Identities=22% Similarity=0.274 Sum_probs=421.7
Q ss_pred cceeecCCCceEEecCCcCCCCcccccCCCCCCCCCCCeeccCCchHHHhHHhCCCCCCCCCcccccccccccccCCcee
Q 045314 8 IGKTKLDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYY 87 (992)
Q Consensus 8 ~~~~~L~~~W~f~~~~~~~~~g~~ls~~~~~~~d~~~W~~a~VPgtv~~~L~~~g~i~dP~~g~N~~~~~~~~~~~~~~~ 87 (992)
+.+++|+|.|.|+..+... . .+..+|++++.++. ++.+|+||...++ .+|.. +.
T Consensus 10 ~~~~~L~G~W~f~~~~~~~--------------~----~~~~w~~~~~s~~~-~i~VP~~w~~~~~--~~~~~-----~~ 63 (808)
T COG3250 10 REIKSLNGLWAFSLDDEPC--------------A----VPQRWPESLLSESR-AIAVPGNWQDQGE--YDRPI-----YT 63 (808)
T ss_pred cceeccCCceeEEecCCcc--------------c----cccccchhhhhhcc-CccCCccHhhcCc--cCcce-----ec
Confidence 3468999999999874311 0 34556777777666 7778888887775 44432 33
Q ss_pred eEEEEEEEEccC-CCCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEEECCCCCCCCCC
Q 045314 88 TFWFFTTFQCKL-SENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPP 166 (992)
Q Consensus 88 ~~WYrr~F~vp~-~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v~~~~~~~~~p~ 166 (992)
.++|.++|.+|. ..++++.|.|+++++.++||+||+.+++++|+|++|++||+..+.. ++|.+.+.+.....+...+.
T Consensus 64 ~~~y~~~~~~~~~~~~~~~~l~f~~~~~~~~v~~ng~~~l~~eg~~~~fev~vng~~v~-~~~~~~~~~~~dis~~~~~~ 142 (808)
T COG3250 64 NVWYPREVFPPKVPAGNRIGLYFDAVDTLAKVWLNGQEVLEFQGVYTPFEVDVTGPYVG-GGKDSRITVEFDISPNLQTG 142 (808)
T ss_pred ceeeeecccCCccccCCceEEEEeccccceeEEeCCeEEEEecCceeEEEEeeccceec-CCcceEEEEeeccccccccC
Confidence 678999998876 5789999999999999999999999999999999999999987774 78889888887332222111
Q ss_pred CCCCCCccccccccccCcccCCcccCCCCCCCcccccceEEEEEcceeEecCCccccccCcceecCcceeeeeecCcceE
Q 045314 167 EGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSSFFDNYTRV 246 (992)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~GWDW~p~~~~~~~GIwr~V~L~~~~~v~i~d~~~~~~~~~~v~~~~~~v~~~~~~~~~~a 246 (992)
............+.++..+.||. +.+||+|||+|+.++.+++.|+ +|.+....+...+
T Consensus 143 --~~~~~~~v~~~~~~~~~~~~d~~-----r~aGi~RdV~l~i~p~~~~~di---------------~V~t~~~~~~~~~ 200 (808)
T COG3250 143 --PNGLVVTVENWSKGSYYEDQDFF-----RYAGIHRDVMLYITPNTHVDDI---------------TVVTHLAEDCNHA 200 (808)
T ss_pred --CccCceEEeccCCCCCccccCee-----ecccccceeEEEEccceeEeee---------------EEEEecchhhhhh
Confidence 01000111111123344455774 7899999999999999999998 5555444444445
Q ss_pred EEEEEEEEEeCCcceeEEEEEEEEEEeCCCCEEEEeeeEEEEEEeCCCCeEEEEeeeeecCCCcccCCCCCCCCccEEEE
Q 045314 247 YLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVR 326 (992)
Q Consensus 247 ~v~v~~~v~n~~~~~~~~~l~~~v~~~~~g~~~~~~~~~~~~v~l~~~~~~~~~~~~l~i~~P~LWwP~g~G~P~LY~l~ 326 (992)
.+. +.+.+..... ..+++++. +.++.++ .. .+...++++.. .+ .+.|++|+||||. +|+||++.
T Consensus 201 ~~~--~~~~~~~~~~--~~ls~~L~-~~~~~v~-~~-----~~~~~~~~~~~-~~-~~~V~~p~lWsp~---~P~LY~l~ 264 (808)
T COG3250 201 SLD--VKIQQVVANG--LDLSVELR-DAEQQVV-AT-----GQERGTGQGAA-AG-ELKVENPKLWSPE---DPYLYRLV 264 (808)
T ss_pred hee--eheeeecccC--ceEEEEEE-cCCCcee-ee-----eeccccCCcce-eE-EEeccCcccCCCC---CCceEEEE
Confidence 544 3333322111 35666665 3334332 11 11123444322 22 4889999999999 99999999
Q ss_pred EEEEECCCeeeEeEeeeEEEEEEEEeeecCCCceEEEECCEeEEEeeeeecCCCCcC-C-CCHHHHHHHHHHHHhCCCcE
Q 045314 327 ISVDVKGYGESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLL-R-LSKKRYKTDIKFHADMNMNM 404 (992)
Q Consensus 327 v~l~~~g~~~~D~~~~~fG~R~v~~~~d~~~~g~~f~vNG~pi~lrG~n~~p~d~~~-~-~~~e~~~~~l~~~k~~g~N~ 404 (992)
++|..++ .++|....+||||+|++.. + .|+||||||||||+|||++++.+ + .+.+.++++|++||++||||
T Consensus 265 ~~L~~~~-~~~d~~~~~iGfR~iei~~----~--~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~ 337 (808)
T COG3250 265 VTLKDAN-TLIDAEALRIGFRTVEIKD----G--LLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNS 337 (808)
T ss_pred EEEEeCC-ceeeEEEeeeccEEEEEEC----C--eEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCE
Confidence 9999887 5899999999999999962 2 69999999999999999999998 4 45666999999999999999
Q ss_pred EEccCCCCCCChHHHHHHHHcCcEEEEecccccCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Q 045314 405 IRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQ 484 (992)
Q Consensus 405 iR~wgGg~~e~~~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~ 484 (992)
||+| |+|++++||+||||||||||+|+|++|.. .+ +.|...+...+++++||+|+||||||||||+|||.
T Consensus 338 vRts--HyP~~~~~ydLcDelGllV~~Ea~~~~~~----~~----~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~ 407 (808)
T COG3250 338 VRTS--HYPNSEEFYDLCDELGLLVIDEAMIETHG----MP----DDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNES 407 (808)
T ss_pred EEec--CCCCCHHHHHHHHHhCcEEEEecchhhcC----CC----CCcchhHHHHHHHHHHHHhccCCCcEEEEeccccc
Confidence 9999 89999999999999999999999998642 21 23445667788999999999999999999999997
Q ss_pred CCccchHHHHHhhccc---Cc-ccccccCCCCcccccccccCCCCccCCCCceeEeCCCCCCCCC----CCCCCCCCCCc
Q 045314 485 VPPEDINKALKNDLKL---HP-YFKNSNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFAD----GKGNFTDGPYE 556 (992)
Q Consensus 485 ~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~lDptR~y~~sS~~~g~~~----~~g~~~~gpy~ 556 (992)
..+......+...... ++ .|.... .....+..++++-.+.-++++++|..+... ..+..-.|-+.
T Consensus 408 ~~g~~~~~~~~~~k~~d~~r~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~p~~l~~~~~~~~n~~~G~~~ 480 (808)
T COG3250 408 GHGSNHWALYRWFKASDPTRPVQYEGRG-------TEATDILSPMYERVDEILYFPGSPRPLILCEYAHAMGNSYGGDYH 480 (808)
T ss_pred cCccccHHHHHHHhhcCCccceeccCcc-------ceeeecccchhhcCccccccCCCCCCceeecchHhhccCcCCcee
Confidence 7655443333221111 11 111100 011222334455555556777777333210 01111112111
Q ss_pred cc---CCCCcccc----ccCCCCCcc--ccCCCCCCcHHHHHhcCCCCCCCCcccccCCCCcccccCcchhhccccCCCC
Q 045314 557 IQ---YPEDFFKD----SFYQYGFNP--EVGSVGMPVAATIRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYS 627 (992)
Q Consensus 557 ~~---~p~~~~~~----~~~~~~F~S--E~G~~s~P~~~sl~~~~~~~~w~~~~~~~~~~~~~~~~~~~~w~~H~~~~~~ 627 (992)
+| .....+.. .+.+++|++ |+|++++|.......+- .+|... ....+|..|...+..
T Consensus 481 yw~~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~~~~~~g~~~~~~--~~~~~~------------~~~~v~~~~~~~~~~ 546 (808)
T COG3250 481 YWGVFGEYPRLQGGFIWDWVDQRLIPIDETGNQAYAYGGDFGDYP--NDRSFE------------LNGLVFPDRQPNPGL 546 (808)
T ss_pred eeehhccccccccceehhhcccccCcccccCccccccccccCCCc--cccchh------------cccccccccccCccc
Confidence 11 11111111 234578999 99999988777666443 222221 001233333211100
Q ss_pred CCcchhhhhhhcCCCccHHHHHHHHHHhHHHHHHHHHHHhhccCCCCceEEEEecccCCccccccceeccCCCCccccce
Q 045314 628 KPGKVHDQILLYGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYG 707 (992)
Q Consensus 628 ~~~~~~~~~~~yg~p~~l~df~~~sQ~~q~e~~ra~~Ea~r~~~~~~~~G~l~WqlNd~WP~~~W~~~Dyy~~pk~~yy~ 707 (992)
+......+...|+.+++.+.|++.+|.+++++.+...+.+++.. ..|+|.++|+|||.||+.+|+.+||.++||+ ||.
T Consensus 547 ~e~~~~~~~~~f~~~k~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~pg~~~~~~~~~~~~k~-~~l 624 (808)
T COG3250 547 KEAKVGTQFWAFGDPKTFQGFLVTSENLFAEADRERLPKLRALL-GETLGSLEWQLNDVPPGASWSSLDEALRPKA-LYL 624 (808)
T ss_pred hheeEEEeeeeeeccccCCceEEechhheeeeehhhhhhhhhcc-ceEeeeEEEEeecCCCcccccccccccCCcc-eEE
Confidence 00011112346788888888999999999999999999999865 6899999999999999999999999999999 999
Q ss_pred eeccccceEEEeecC
Q 045314 708 CRCAAEPIHVQLNLA 722 (992)
Q Consensus 708 ~k~a~~pv~v~~~~~ 722 (992)
++++..|+.+.+...
T Consensus 625 ~~r~~~~~~~~~~~~ 639 (808)
T COG3250 625 TRRFTQPELTAWSEA 639 (808)
T ss_pred EEEEeccccchhhhh
Confidence 999999999886543
No 4
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=100.00 E-value=1.3e-67 Score=663.21 Aligned_cols=628 Identities=20% Similarity=0.214 Sum_probs=406.3
Q ss_pred cceeecCCCceEEecCCcCCCCcccccCCCCCCCCCCCeeccCCchHHHhHHhCCCCCCCCCcc-------ccccccccc
Q 045314 8 IGKTKLDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGL-------ENEMILDIA 80 (992)
Q Consensus 8 ~~~~~L~~~W~f~~~~~~~~~g~~ls~~~~~~~d~~~W~~a~VPgtv~~~L~~~g~i~dP~~g~-------N~~~~~~~~ 80 (992)
...++|||.|+|+..+......+.+.. ..++ .|..+.|||+|.. +| +..|.|.. +...++.
T Consensus 50 ~~~~sLnG~W~F~~~~~~~~~~~~~~~---~~~~--~w~~I~VP~~w~~----~G-~~~~~y~n~~ypf~~~~p~vp~-- 117 (1027)
T PRK09525 50 QQRQSLNGEWRFSYFPAPEAVPESWLE---CDLP--DADTIPVPSNWQL----HG-YDAPIYTNVTYPIPVNPPFVPE-- 117 (1027)
T ss_pred cceEecCCCcceeECCChhhCcccccc---cCCC--CCcEeCCCCcHHh----cC-CCCCccccccCCCCCCCCCCCC--
Confidence 356899999999987654321111111 2233 3999999999974 23 33343321 1111211
Q ss_pred ccCCceeeEEEEEEEEccC-CCCC-eEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEEECC
Q 045314 81 DSGREYYTFWFFTTFQCKL-SENQ-HLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPP 158 (992)
Q Consensus 81 ~~~~~~~~~WYrr~F~vp~-~~~~-~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v~~~ 158 (992)
+..++||||+|++|+ |.++ +++|+|+||++.|+|||||++||.|.|+|+||+||||++|++ |+|+|+|+|...
T Consensus 118 ----~n~~gwYrr~F~vp~~w~~~~rv~L~FeGV~~~a~VwvNG~~VG~~~g~~~pfefDIT~~l~~-G~N~L~V~V~~~ 192 (1027)
T PRK09525 118 ----ENPTGCYSLTFTVDESWLQSGQTRIIFDGVNSAFHLWCNGRWVGYSQDSRLPAEFDLSPFLRA-GENRLAVMVLRW 192 (1027)
T ss_pred ----cCCeEEEEEEEEeChhhcCCCeEEEEECeeccEEEEEECCEEEEeecCCCceEEEEChhhhcC-CccEEEEEEEec
Confidence 113689999999997 6776 999999999999999999999999999999999999999998 689999999754
Q ss_pred CCCCCCCCCCCCCCccccccccccCcccCCcccCCCCCCCcccccceEEEEEcceeEecCCccccccCcceecCcceeee
Q 045314 159 DHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSS 238 (992)
Q Consensus 159 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~GWDW~p~~~~~~~GIwr~V~L~~~~~v~i~d~~~~~~~~~~v~~~~~~v~~~ 238 (992)
.... |....|+ ++.+||||+|+|+++++++|.|+ ++.++
T Consensus 193 sdgs---------------------~~e~qd~-----w~~sGI~R~V~L~~~p~~~I~d~---------------~v~t~ 231 (1027)
T PRK09525 193 SDGS---------------------YLEDQDM-----WRMSGIFRDVSLLHKPTTQLSDF---------------HITTE 231 (1027)
T ss_pred CCCC---------------------ccccCCc-----eeeccccceEEEEEcCCcEEeee---------------EEEee
Confidence 3210 1111132 14699999999999999999998 66666
Q ss_pred eecCcceEEEEEEEEEEeCCcceeEEEEEEEEEEeCCCCEEEEeeeEEEEEEeCCCC-eEEEEeeeeecCCCcccCCCCC
Q 045314 239 FFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGA-HVQYTFPQLFFYKPNLWWPNGM 317 (992)
Q Consensus 239 ~~~~~~~a~v~v~~~v~n~~~~~~~~~l~~~v~~~~~g~~~~~~~~~~~~v~l~~~~-~~~~~~~~l~i~~P~LWwP~g~ 317 (992)
+..+...+.|++++.+.+... ...++++++. +.++.++.............++. ...+++ .+.|++|+||||.
T Consensus 232 l~~~~~~a~v~v~v~~~~~~~--~~~~v~~~l~-d~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~p~lWs~e-- 305 (1027)
T PRK09525 232 LDDDFRRAVLEVEAQVNGELR--DELRVTVQLW-DGETLVASGTAPFGTEIIDERGAYADRVTL-RLNVENPKLWSAE-- 305 (1027)
T ss_pred ccCccceEEEEEEEEEecCCC--CcEEEEEEEE-cCCCcEEEEeecccceeeeccccccceEEE-EEEcCCCCcCCCC--
Confidence 555556788999888875332 2345666665 33343221100000001112221 122333 4789999999997
Q ss_pred CCCccEEEEEEEEECCCeeeEeEeeeEEEEEEEEeeecCCCceEEEECCEeEEEeeeeecCCCCcC--CCCHHHHHHHHH
Q 045314 318 GKQSLYTVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLL--RLSKKRYKTDIK 395 (992)
Q Consensus 318 G~P~LY~l~v~l~~~g~~~~D~~~~~fG~R~v~~~~d~~~~g~~f~vNG~pi~lrG~n~~p~d~~~--~~~~e~~~~~l~ 395 (992)
+|+||+|+++|..+++.++|+.+.+||||+|++. +..|+|||+||++||+|+|+.++.. +++++.++++|+
T Consensus 306 -~P~LY~l~v~l~~~~g~v~d~~~~~~GfR~iei~------~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~ 378 (1027)
T PRK09525 306 -TPNLYRAVVSLLDADGTLIEAEAYDVGFRKVEIE------NGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDIL 378 (1027)
T ss_pred -CCeeEEEEEEEEeCCCcEEEEEEeeEEEEEEEEE------CCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHH
Confidence 9999999999976444688999999999999984 3379999999999999999877765 689999999999
Q ss_pred HHHhCCCcEEEccCCCCCCChHHHHHHHHcCcEEEEecccccCCCCCCCCCC--CCCCcccHHHHHHHHHHHHHHhCCCc
Q 045314 396 FHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVS--NPDGPLDHDLFMLCARDTVKLLRNHP 473 (992)
Q Consensus 396 ~~k~~g~N~iR~wgGg~~e~~~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~--~~~~p~~~~~~~~~~~~~v~rlrNHP 473 (992)
+||++|+||||++ |++++++||++|||+|||||+|+++.+ +|..+. ..+.|...+.+++++++||+|+||||
T Consensus 379 lmK~~g~NaVR~s--HyP~~p~fydlcDe~GilV~dE~~~e~----hg~~~~~~~~~dp~~~~~~~~~~~~mV~RdrNHP 452 (1027)
T PRK09525 379 LMKQHNFNAVRCS--HYPNHPLWYELCDRYGLYVVDEANIET----HGMVPMNRLSDDPRWLPAMSERVTRMVQRDRNHP 452 (1027)
T ss_pred HHHHCCCCEEEec--CCCCCHHHHHHHHHcCCEEEEecCccc----cCCccccCCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999998 899999999999999999999998742 121110 11234556678899999999999999
Q ss_pred EEEEEecCCCCCCccchHHHHHhhcccCcccccccCCCCcccccccccCCCCccCCCCceeEeCCCCCCCCCCCCCCCCC
Q 045314 474 SLALWVGGNEQVPPEDINKALKNDLKLHPYFKNSNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFADGKGNFTDG 553 (992)
Q Consensus 474 SIi~W~~gNE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lDptR~y~~sS~~~g~~~~~g~~~~g 553 (992)
||++||+|||.......... ...+|++|||||++-.+.+.. ....+
T Consensus 453 SIi~WSlgNE~~~g~~~~~l----------------------------~~~~k~~DptRpV~y~~~~~~--~~~~D---- 498 (1027)
T PRK09525 453 SIIIWSLGNESGHGANHDAL----------------------------YRWIKSNDPSRPVQYEGGGAD--TAATD---- 498 (1027)
T ss_pred EEEEEeCccCCCcChhHHHH----------------------------HHHHHhhCCCCcEEECCCCCC--CCccc----
Confidence 99999999998644332211 223678999999987653210 00011
Q ss_pred CCcccCCCCccccccCCCCCccccCCCCCCcHHHHHhcCCCCCCCCcccccCCCCcccccCcchhhc-cccCCCCCCcch
Q 045314 554 PYEIQYPEDFFKDSFYQYGFNPEVGSVGMPVAATIRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKY-HKYIPYSKPGKV 632 (992)
Q Consensus 554 py~~~~p~~~~~~~~~~~~F~SE~G~~s~P~~~sl~~~~~~~~w~~~~~~~~~~~~~~~~~~~~w~~-H~~~~~~~~~~~ 632 (992)
+..+.+. .+ ...+. +...| .+.|+.+.....-..|.+. =+| |. ++ +
T Consensus 499 ---v~~~my~------~~-~~~~~-~~~~~-~~~~~~~~~~~~~~kP~i~--------------cEY~Ha-mg--n---- 545 (1027)
T PRK09525 499 ---IICPMYA------RV-DEDQP-FPAVP-KWSIKKWISLPGETRPLIL--------------CEYAHA-MG--N---- 545 (1027)
T ss_pred ---cccCCCC------Cc-ccccc-ccccc-hHHHHHHHhcCCCCCCEEE--------------Eechhc-cc--C----
Confidence 1111100 00 00000 00111 1123333321000001000 001 11 00 0
Q ss_pred hhhhhhcCCCccHHHHHHHHHHhHHHHHHHHHHHhhccCCCCceEEEEecccC------------------C---ccc--
Q 045314 633 HDQILLYGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQN------------------P---WTG-- 689 (992)
Q Consensus 633 ~~~~~~yg~p~~l~df~~~sQ~~q~e~~ra~~Ea~r~~~~~~~~G~l~WqlNd------------------~---WP~-- 689 (992)
.+-+|++| .+.+++. |...|--+|..-| - .|.
T Consensus 546 --------~~g~l~~y---------------w~~~~~~--~~~~GgfIW~w~Dqg~~~~~~~G~~~~~YGGDfgd~p~d~ 600 (1027)
T PRK09525 546 --------SLGGFAKY---------------WQAFRQY--PRLQGGFIWDWVDQGLTKYDENGNPWWAYGGDFGDTPNDR 600 (1027)
T ss_pred --------cCccHHHH---------------HHHHhcC--CCeeEEeeEeccCcceeeECCCCCEEEEECCcCCCCCCCC
Confidence 00122222 1122221 3344444444222 1 122
Q ss_pred --cccceeccCCCCccccceeeccccceEEEeecC-ceEEEEEeCCC-ccccceEEEEEEEEccCCceeeEEeEEEEeCC
Q 045314 690 --LRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLA-SYFIEVVNTTS-QELSDVAIEASVWDLDGACPYYKVTEKLSVPP 765 (992)
Q Consensus 690 --~~W~~~Dyy~~pk~~yy~~k~a~~pv~v~~~~~-~~~v~vvN~~~-~~~~~~~l~v~~~d~~g~~~~~~~~~~~~i~~ 765 (992)
..-+|+.-++.|++.+|-+|+..+||.+..+.. ...|.|.|.-. ..+.+..+++++.. +|+++.+.. ..++++|
T Consensus 601 nFc~dGlv~~dR~p~p~~~E~K~v~qpv~~~~~~~~~~~~~i~N~~~F~~l~~~~~~w~~~~-~G~~~~~g~-~~~~~~p 678 (1027)
T PRK09525 601 QFCMNGLVFPDRTPHPALYEAKHAQQFFQFSLLSTTPLTIEVTSEYLFRHSDNELLHWSVAL-DGKPLASGE-VPLDLAP 678 (1027)
T ss_pred CceeceeECCCCCCCccHHHHHhhcCcEEEEEccCCCcEEEEEEcccCCcccccEEEEEEEE-CCEEEEeee-EccccCC
Confidence 235888889999999999999999999976432 35899999764 45667788888764 898876655 3568889
Q ss_pred CCeEEEEeee-cCCCCCCCceEEEEEEEEEc------CCCeEEeeeeeec
Q 045314 766 KKVVSIAEMK-YPKTKNPKPVYFLLLKLYNM------SDYGIISRNFYWL 808 (992)
Q Consensus 766 ~~~~~v~~~~-~~~~~~~~~~~~l~l~L~d~------~~g~~~s~N~yw~ 808 (992)
+++..+ +++ ++.. .....+||.+.+... +.|.+|+.-=+-+
T Consensus 679 ~~~~~i-~l~~~~~~-~~~~e~~l~~~~~~~~~~~~a~~g~~va~~Q~~l 726 (1027)
T PRK09525 679 QGSQRI-TLPELPQP-ESAGQLWLNVEVVQPNATAWSEAGHRSAWQQWRL 726 (1027)
T ss_pred CCceEE-ecCCCCCC-CCCceEEEEEEEEECCCCcccCCCCEEEEEEEEe
Confidence 888765 345 4421 223467877765431 2355555544444
No 5
>PRK10150 beta-D-glucuronidase; Provisional
Probab=100.00 E-value=6.2e-69 Score=652.40 Aligned_cols=545 Identities=19% Similarity=0.226 Sum_probs=362.8
Q ss_pred cccceeecCCCceEEecCCcCCCCcccccCCCCCCCCCCCeeccCCchHHHhHHhCCCCCCCCCcccccccccccccCCc
Q 045314 6 ASIGKTKLDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGRE 85 (992)
Q Consensus 6 ~~~~~~~L~~~W~f~~~~~~~~~g~~ls~~~~~~~d~~~W~~a~VPgtv~~~L~~~g~i~dP~~g~N~~~~~~~~~~~~~ 85 (992)
..++.++|||+|+|+..+......+.+.... + ..+..++|||++... + +++ +. ..
T Consensus 8 ~~r~~~~Lng~W~F~~~~~~~~~~~~w~~~~---~--~~~~~i~vP~~~~~~----~--~~~----~~----------~~ 62 (604)
T PRK10150 8 KTREIKDLSGLWAFKLDRENCGIDQRWWESA---L--PESRAMAVPGSFNDQ----F--ADA----DI----------RN 62 (604)
T ss_pred CCeeeeecCCccceEECCccccccccccccC---C--CCCcEecCCCchhhc----c--ccc----cc----------cC
Confidence 4567889999999998754221111111111 1 112456788887421 1 110 00 01
Q ss_pred e-eeEEEEEEEEccC-CCCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEEECCCCCCC
Q 045314 86 Y-YTFWFFTTFQCKL-SENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGT 163 (992)
Q Consensus 86 ~-~~~WYrr~F~vp~-~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v~~~~~~~~ 163 (992)
+ ..+||||+|++|+ +++++++|+|+||++.|+|||||++||.|.|||+||+||||++|++|++|+|+|+|+++.....
T Consensus 63 ~~G~~WYrr~f~lp~~~~gk~v~L~Fegv~~~a~V~lNG~~vg~~~~~~~~f~~DIT~~l~~G~~n~L~V~v~n~~~~~~ 142 (604)
T PRK10150 63 YVGDVWYQREVFIPKGWAGQRIVLRFGSVTHYAKVWVNGQEVMEHKGGYTPFEADITPYVYAGKSVRITVCVNNELNWQT 142 (604)
T ss_pred CcccEEEEEEEECCcccCCCEEEEEECcccceEEEEECCEEeeeEcCCccceEEeCchhccCCCceEEEEEEecCCCccc
Confidence 1 2589999999987 7899999999999999999999999999999999999999999999666799999998754444
Q ss_pred CCCCCCCCCccccccccccCcccCCcccCCCCCCCcccccceEEEEEcceeEecCCccccccCcceecCcceeeeeecCc
Q 045314 164 IPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSSFFDNY 243 (992)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~~~~GWDW~p~~~~~~~GIwr~V~L~~~~~v~i~d~~~~~~~~~~v~~~~~~v~~~~~~~~ 243 (992)
+|.. ...++.. + ..+.++ ++||. +++||||+|+|+.+++++|+|+ ++.+.+..+.
T Consensus 143 ~p~g-~~~~~~~-~-~~k~~~--~~d~~-----~~~GI~r~V~L~~~~~~~i~dv---------------~v~~~~~~~~ 197 (604)
T PRK10150 143 LPPG-NVIEDGN-G-KKKQKY--NFDFF-----NYAGIHRPVMLYTTPKTHIDDI---------------TVVTELAQDL 197 (604)
T ss_pred CCCC-ccccCCc-c-cccccc--ccccc-----cccCCCceEEEEEcCCccCceE---------------EEEeecCCcC
Confidence 4431 1111110 1 123444 34774 5799999999999999999998 5655444334
Q ss_pred ceEEEEEEEEEEeCCcceeEEEEEEEEEEeCCCCEEEEeeeEEEEEEeCCCCeEEEEeeeeecCCCcccCCCCCCCCccE
Q 045314 244 TRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLY 323 (992)
Q Consensus 244 ~~a~v~v~~~v~n~~~~~~~~~l~~~v~~~~~g~~~~~~~~~~~~v~l~~~~~~~~~~~~l~i~~P~LWwP~g~G~P~LY 323 (992)
..+.|+|++++.+.. ..+.++|. +.+|+.+.. . .+. .. .+.|++|+||||. +|+||
T Consensus 198 ~~a~v~v~v~~~~~~-----~~~~~~l~-~~~g~~v~~-----~-----~~~--~~---~~~i~~p~lW~p~---~P~LY 253 (604)
T PRK10150 198 NHASVDWSVETNGDV-----DSVSVTLR-DADGQVVAT-----G-----QGT--SG---TLQVVNPHLWQPG---EGYLY 253 (604)
T ss_pred ceEEEEEEEEEcCCc-----eEEEEEEE-CCCCCEEEe-----c-----ccc--ce---EEEcCCCcccCCC---CCceE
Confidence 668888887775532 34555665 444544311 0 111 11 3678999999995 99999
Q ss_pred EEEEEEEECCCeeeEeEeeeEEEEEEEEeeecCCCceEEEECCEeEEEeeeeecCCCCcC--CCCHHHHHHHHHHHHhCC
Q 045314 324 TVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLL--RLSKKRYKTDIKFHADMN 401 (992)
Q Consensus 324 ~l~v~l~~~g~~~~D~~~~~fG~R~v~~~~d~~~~g~~f~vNG~pi~lrG~n~~p~d~~~--~~~~e~~~~~l~~~k~~g 401 (992)
+|+++|..+| +++|+.+.+||||+|++. +..|+|||+||||||+|+|++..+. +++++.++++|++||+||
T Consensus 254 ~l~v~l~~~g-~~~d~~~~~~GfR~i~~~------~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G 326 (604)
T PRK10150 254 TLCVELAKSG-TECDTYPLRFGIRSVAVK------GGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIG 326 (604)
T ss_pred EEEEEEeeCC-eeEEEEEeeeEEEEEEEe------CCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCC
Confidence 9999998755 689999999999999984 3469999999999999999776655 589999999999999999
Q ss_pred CcEEEccCCCCCCChHHHHHHHHcCcEEEEecccccCCCCCCC-----CCCCCCC------cccHHHHHHHHHHHHHHhC
Q 045314 402 MNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGV-----PVSNPDG------PLDHDLFMLCARDTVKLLR 470 (992)
Q Consensus 402 ~N~iR~wgGg~~e~~~fydlcDe~GIlVw~e~~~~~~~~~~g~-----~~~~~~~------p~~~~~~~~~~~~~v~rlr 470 (992)
+|+||++ |++++++|||+|||+|||||+|++..+.....+. +...+.+ |...+.+++++++||+|+|
T Consensus 327 ~N~vR~s--h~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~ 404 (604)
T PRK10150 327 ANSFRTS--HYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDK 404 (604)
T ss_pred CCEEEec--cCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcc
Confidence 9999998 7899999999999999999999975321000000 0001111 3345667788999999999
Q ss_pred CCcEEEEEecCCCCCCccchHHHHHhhcccCcccccccCCCCcccccccccCCCCccCCCCceeEeCCCCCCCC--CCCC
Q 045314 471 NHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKNSNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFA--DGKG 548 (992)
Q Consensus 471 NHPSIi~W~~gNE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lDptR~y~~sS~~~g~~--~~~g 548 (992)
|||||++||++||..........+ ...+.+.+|++|||||++..+...... ....
T Consensus 405 NHPSIi~Ws~gNE~~~~~~~~~~~-----------------------~~~l~~~~k~~DptR~vt~~~~~~~~~~~~~~~ 461 (604)
T PRK10150 405 NHPSVVMWSIANEPASREQGAREY-----------------------FAPLAELTRKLDPTRPVTCVNVMFATPDTDTVS 461 (604)
T ss_pred CCceEEEEeeccCCCccchhHHHH-----------------------HHHHHHHHHhhCCCCceEEEecccCCccccccc
Confidence 999999999999975432111111 112234478899999999765210000 0000
Q ss_pred CCCC--C--CCcccCCC--C------ccc-------cccCCCCCccccCCCCCCcHHHHHhcCCCCCCCCcccccCCCCc
Q 045314 549 NFTD--G--PYEIQYPE--D------FFK-------DSFYQYGFNPEVGSVGMPVAATIRATMPPEGWQIPVFKQGSDGY 609 (992)
Q Consensus 549 ~~~~--g--py~~~~p~--~------~~~-------~~~~~~~F~SE~G~~s~P~~~sl~~~~~~~~w~~~~~~~~~~~~ 609 (992)
...| + .|.-|+.. . ++. ..+.+|.++||||+.+.+.+
T Consensus 462 ~~~Dv~~~N~Y~~wy~~~~~~~~~~~~~~~~~~~~~~~~~kP~~isEyg~~~~~~~------------------------ 517 (604)
T PRK10150 462 DLVDVLCLNRYYGWYVDSGDLETAEKVLEKELLAWQEKLHKPIIITEYGADTLAGL------------------------ 517 (604)
T ss_pred CcccEEEEcccceecCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEccCCcccccc------------------------
Confidence 0000 0 11111100 0 000 01134566777775443322
Q ss_pred ccccCcchhhccccCCCCCCcchhhhhhhcCCCccHHHHHHHHHHhHHHHHHHHHHHhhccCCCCceEEEEecccCC---
Q 045314 610 IEEVPNPIWKYHKYIPYSKPGKVHDQILLYGIPKDLDDFCLKAQLVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNP--- 686 (992)
Q Consensus 610 ~~~~~~~~w~~H~~~~~~~~~~~~~~~~~yg~p~~l~df~~~sQ~~q~e~~ra~~Ea~r~~~~~~~~G~l~WqlNd~--- 686 (992)
|...+ .+-+ |+| |++.++...+.+.++ |...|..+|.+.|.
T Consensus 518 -----------h~~~~---------------~~~~-ee~-------q~~~~~~~~~~~~~~--p~~~G~~iW~~~D~~~~ 561 (604)
T PRK10150 518 -----------HSMYD---------------DMWS-EEY-------QCAFLDMYHRVFDRV--PAVVGEQVWNFADFATS 561 (604)
T ss_pred -----------ccCCC---------------CCCC-HHH-------HHHHHHHHHHHHhcC--CceEEEEEEeeeccCCC
Confidence 21000 0001 333 445555555566554 67999999999993
Q ss_pred ---ccc--cccceeccCCCCccccceeeccccceE
Q 045314 687 ---WTG--LRGQFYDHLLDQTAGFYGCRCAAEPIH 716 (992)
Q Consensus 687 ---WP~--~~W~~~Dyy~~pk~~yy~~k~a~~pv~ 716 (992)
|+. -.-+++|.++.||.++|..|+..+|+-
T Consensus 562 ~g~~~~~g~~~Gl~~~dr~~k~~~~~~k~~~~~~~ 596 (604)
T PRK10150 562 QGILRVGGNKKGIFTRDRQPKSAAFLLKKRWTGIP 596 (604)
T ss_pred CCCcccCCCcceeEcCCCCChHHHHHHHHHhhcCc
Confidence 222 346999999999999999998887763
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.97 E-value=1.1e-32 Score=307.63 Aligned_cols=273 Identities=24% Similarity=0.314 Sum_probs=159.3
Q ss_pred ceEEEECCEeEEEeeeeecCCCCcC--CCCHHHHHHHHHHHHhCCCcEEEccCCCCCCChHHHHHHHHcCcEEEEecccc
Q 045314 359 GRLFKVNGQPIFIRGGNWILSDGLL--RLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWIT 436 (992)
Q Consensus 359 g~~f~vNG~pi~lrG~n~~p~d~~~--~~~~e~~~~~l~~~k~~g~N~iR~wgGg~~e~~~fydlcDe~GIlVw~e~~~~ 436 (992)
+..|+|||+||+|||+|+|+..... +++++.++++|++||+||+|+||++ |++++++||++|||+|||||+|++..
T Consensus 5 ~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~--h~p~~~~~~~~cD~~GilV~~e~~~~ 82 (298)
T PF02836_consen 5 DGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTH--HYPPSPRFYDLCDELGILVWQEIPLE 82 (298)
T ss_dssp TTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEET--TS--SHHHHHHHHHHT-EEEEE-S-B
T ss_pred CCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcc--cccCcHHHHHHHhhcCCEEEEecccc
Confidence 3469999999999999999866554 5899999999999999999999998 79999999999999999999999874
Q ss_pred cCCCC--CCCCCCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCCCccchHHHHHhhcccCcccccccCCCCcc
Q 045314 437 GDVDG--RGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKNSNETGNFT 514 (992)
Q Consensus 437 ~~~~~--~g~~~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (992)
+.... .+........|...+.+.+++++||+|+||||||++||++||... ...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~~~----~~~~~------------------- 139 (298)
T PF02836_consen 83 GHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNESDY----REFLK------------------- 139 (298)
T ss_dssp SCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESSHH----HHHHH-------------------
T ss_pred ccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccCcc----ccchh-------------------
Confidence 32100 010000112355667788899999999999999999999999821 11111
Q ss_pred cccccccCCCCccCCCCceeEeCCCC-CCCCCCCC-CCCCCCCcccC-CC---Cccc---cccCCCCCccccCCCCCCcH
Q 045314 515 EDLSLSVQDPSQYLDGTRIYIQGSLW-DGFADGKG-NFTDGPYEIQY-PE---DFFK---DSFYQYGFNPEVGSVGMPVA 585 (992)
Q Consensus 515 ~~~~~~~~~~~~~lDptR~y~~sS~~-~g~~~~~g-~~~~gpy~~~~-p~---~~~~---~~~~~~~F~SE~G~~s~P~~ 585 (992)
.+...++++|||||++.+|.. ........ +...+-|.... +. .+.. ....+|.|.||||..++++.
T Consensus 140 -----~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~kP~i~sEyg~~~~~~~ 214 (298)
T PF02836_consen 140 -----ELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDKPIIISEYGADAYNSK 214 (298)
T ss_dssp -----HHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS-EEEEEESEBBSST-
T ss_pred -----HHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCCCeEehhccccccccC
Confidence 112336889999999877652 11000000 00011110000 00 0110 01246789999998887755
Q ss_pred HHHHhcCCCCCCCCcccccCCCCcccccCcchhhccccCCCCCCcchhhhhhhcCCCccHHHHHHHHHHhHHHHHHHHHH
Q 045314 586 ATIRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYSKPGKVHDQILLYGIPKDLDDFCLKAQLVNYIQYRALLE 665 (992)
Q Consensus 586 ~sl~~~~~~~~w~~~~~~~~~~~~~~~~~~~~w~~H~~~~~~~~~~~~~~~~~yg~p~~l~df~~~sQ~~q~e~~ra~~E 665 (992)
....... ..|.... .| ...-+++|.. ...
T Consensus 215 g~~~~~~-----------------------~~~~~~~---------------~~-q~~~~~~~~~------------~~~ 243 (298)
T PF02836_consen 215 GGDSEYW-----------------------QLWSWYE---------------EY-QGAFIWDYQD------------QAI 243 (298)
T ss_dssp TTHHHHH-----------------------HHHHHCT---------------TE-EEEEESHSBH------------HHE
T ss_pred CCccccc-----------------------cccccCc---------------hh-hhhhhhhhhh------------hhh
Confidence 4433211 0110000 00 0001112211 011
Q ss_pred HhhccCCCCceEEEEecccCCccc-------cccceeccCCCCccccceeeccccceE
Q 045314 666 GWSSRMWSKYTGVLIWKNQNPWTG-------LRGQFYDHLLDQTAGFYGCRCAAEPIH 716 (992)
Q Consensus 666 a~r~~~~~~~~G~l~WqlNd~WP~-------~~W~~~Dyy~~pk~~yy~~k~a~~pv~ 716 (992)
.... +...|..+|...| |.+ ..-+++|+++.||.+||..|+..+||-
T Consensus 244 --~~~~-~~~~g~~~w~~~D-f~~~~~~~~~~~nGlv~~dR~pK~~~~~~k~~~~~v~ 297 (298)
T PF02836_consen 244 --QRRD-PYVAGEFYWTGFD-FGTEPTDYEFEYNGLVDYDRRPKPAYYEYKSQWSPVQ 297 (298)
T ss_dssp --EEEE-TTESEEEEEETTT-TSCSSBTGGGGSBESBETTSEBBHHHHHHHHHHHSEE
T ss_pred --cccc-ccccceeeecceE-eccCCCCCeeeeccEECCcCCcCHHHHHHHHHhhhhc
Confidence 1122 2357888998887 333 234999999999999999999998874
No 7
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=99.91 E-value=3e-24 Score=219.10 Aligned_cols=165 Identities=25% Similarity=0.382 Sum_probs=118.4
Q ss_pred ccceeecCCCceEEecCCcCCCCcccccCCCCCCCCCCCeeccCCchHHHhHHhCCCCCCCCCcccccccccccccCCce
Q 045314 7 SIGKTKLDSGWLAARSTEVGLSGTQLTTSHPPTGPAKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREY 86 (992)
Q Consensus 7 ~~~~~~L~~~W~f~~~~~~~~~g~~ls~~~~~~~d~~~W~~a~VPgtv~~~L~~~g~i~dP~~g~N~~~~~~~~~~~~~~ 86 (992)
+|+.++||+.|+|+............. ..+.++++.|..+.|||+++..++.+ ..|. +... ..+.+
T Consensus 1 ~r~~~~Lng~W~f~~~~~~~~~~~~~~--~~~~~~~~~w~~i~VP~~~~~~~~~~---~~~~---~~~~------~~~~~ 66 (167)
T PF02837_consen 1 SRQVISLNGQWQFQPDDSPQDRPEGWF--SWPDFDDSDWQPISVPGSWEDDLLRA---FVPE---NGDP------ELWDY 66 (167)
T ss_dssp TTCEEESSEEEEEEEESSGGGSCTHHC--CSTTCCCTTSEEEEESSEGTCCTSST---BTTS---TTGC------CTSTC
T ss_pred CCcEEECCccCCEEEeCCcccCccccc--cccccCcCCCeEEeCCCEeecCccce---eccc---cccc------ccccc
Confidence 478899999999999876432211111 11246778999999999998654433 0110 1000 01111
Q ss_pred -eeEEEEEEEEccC-CCCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEEECCCCCCCC
Q 045314 87 -YTFWFFTTFQCKL-SENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGTI 164 (992)
Q Consensus 87 -~~~WYrr~F~vp~-~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v~~~~~~~~~ 164 (992)
..+||||+|++|. +++++++|+|+||++.|+|||||+.||+|.|+|.||++|||++|++|++|+|+|+|.+......
T Consensus 67 ~~~~wYr~~f~lp~~~~~~~~~L~f~gv~~~a~v~vNG~~vg~~~~~~~~~~~dIt~~l~~g~~N~l~V~v~~~~~~~~- 145 (167)
T PF02837_consen 67 SGYAWYRRTFTLPADWKGKRVFLRFEGVDYAAEVYVNGKLVGSHEGGYTPFEFDITDYLKPGEENTLAVRVDNWPDGST- 145 (167)
T ss_dssp CSEEEEEEEEEESGGGTTSEEEEEESEEESEEEEEETTEEEEEEESTTS-EEEECGGGSSSEEEEEEEEEEESSSGGGC-
T ss_pred CceEEEEEEEEeCchhcCceEEEEeccceEeeEEEeCCeEEeeeCCCcCCeEEeChhhccCCCCEEEEEEEeecCCCce-
Confidence 2689999999987 6899999999999999999999999999999999999999999999545999999996532111
Q ss_pred CCCCCCCCccccccccccCcccCCcccCCCCCCCcccccceEEEEEc
Q 045314 165 PPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTG 211 (992)
Q Consensus 165 p~~~~~~~~~~~~~~~~~~~~~GWDW~p~~~~~~~GIwr~V~L~~~~ 211 (992)
..+.|+. +.+||||+|+|+++|
T Consensus 146 --------------------~~~~~~~-----~~~GI~r~V~L~~~p 167 (167)
T PF02837_consen 146 --------------------IPGFDYF-----NYAGIWRPVWLEATP 167 (167)
T ss_dssp --------------------GBSSSEE-----E--EEESEEEEEEEE
T ss_pred --------------------eecCcCC-----ccCccccEEEEEEEC
Confidence 0122332 469999999999875
No 8
>KOG2024 consensus Beta-Glucuronidase GUSB (glycosylhydrolase superfamily 2) [Carbohydrate transport and metabolism]
Probab=99.75 E-value=1.1e-17 Score=172.61 Aligned_cols=205 Identities=19% Similarity=0.261 Sum_probs=141.8
Q ss_pred eEEEEEEEEccC-C---CCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEEECCCCCCC
Q 045314 88 TFWFFTTFQCKL-S---ENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGT 163 (992)
Q Consensus 88 ~~WYrr~F~vp~-~---~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v~~~~~~~~ 163 (992)
..||.|++.+|+ | .++|++|+|..++++|.||+||..+.+|+|++.||+-||...++.|..| .+++......
T Consensus 89 ~~wyer~v~vpe~w~~~~~~r~vlr~~s~H~~Aivwvng~~~~~h~gg~lP~~~~is~~~~~g~~~----~~dn~L~~~t 164 (297)
T KOG2024|consen 89 LVWYERTVTVPESWTQDLGKRVVLRIGSAHSYAIVWVNGVDALEHEGGHLPLEPDISALVFFGPLP----AIDNNLLSWT 164 (297)
T ss_pred eeEEEEEEEcchhhhhhcCCeEEEEeecccceeEEEEcceeecccccCccccchhhhhhhhccccc----cccCcccccc
Confidence 579999999987 4 6789999999999999999999999999999999999999999987777 2333322222
Q ss_pred CCCCCCCCCccccccccccCcccCCcccCCCCCCCcccccceEEEEEcceeEecCCccccccCcceecCcceeeeeecCc
Q 045314 164 IPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFCQPVKIIDPHLVSSFFDNY 243 (992)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~~~~~~GWDW~p~~~~~~~GIwr~V~L~~~~~v~i~d~~~~~~~~~~v~~~~~~v~~~~~~~~ 243 (992)
+|+ ...+ |+. +++|+-|.|-|..++.++|+++.|.+. +..+.
T Consensus 165 ~~~--------------~~~~----dff-----nYag~~~sv~l~t~p~vyi~~~~v~t~---------------l~~~~ 206 (297)
T KOG2024|consen 165 GPN--------------SFCF----DFF-----NYAGEQRSVCLYTTPVVYIEDITVTTG---------------LPHDS 206 (297)
T ss_pred cCC--------------cccc----cCC-----CchhhheeeeeccCCeEEecCcceeec---------------cccCC
Confidence 221 0111 564 589999999999999999999833222 21111
Q ss_pred ceEEEEEEEEEEeCCcceeEEEEEEEEEEeCCCCEEEEeeeEEEEEEeCCCCeEEEEeeeeecCCCcccCCCCCCCCccE
Q 045314 244 TRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLY 323 (992)
Q Consensus 244 ~~a~v~v~~~v~n~~~~~~~~~l~~~v~~~~~g~~~~~~~~~~~~v~l~~~~~~~~~~~~l~i~~P~LWwP~g~G~P~LY 323 (992)
..| ...+... .+.+... +..+.. .+.. +... ..+.++++++|||.+|+.+.||
T Consensus 207 ~~a----~~~v~~~-------~~~~~~~-~~~~~~---------~~~~--~~~~----~~~~~~~~~~wwP~~mh~~~ly 259 (297)
T KOG2024|consen 207 GCA----SYHVGDG-------GVGVQMQ-EGPRRL---------DVVC--GQQA----GLLFVPNYQLWWPYLMHLGPLY 259 (297)
T ss_pred cce----eEeeccc-------ceeeeec-ccccee---------eEEE--eecc----cccccccccccchhhhcCCccc
Confidence 111 1111100 0000000 000100 0000 0000 1356899999999999999999
Q ss_pred EEEEEEEECCCeeeEeEeeeEEEEEEEEeeecCCCceEEEECCEe
Q 045314 324 TVRISVDVKGYGESDLWSHLFGFRKIESHIDNATGGRLFKVNGQP 368 (992)
Q Consensus 324 ~l~v~l~~~g~~~~D~~~~~fG~R~v~~~~d~~~~g~~f~vNG~p 368 (992)
.++|++...+ ...|.+...+|||++.+. ...++|||+|
T Consensus 260 ~lev~l~l~g-~lqd~y~~~~gfrt~~~~------n~~~~ln~kp 297 (297)
T KOG2024|consen 260 SLEVVLELIG-TLQDCYRLPVGFRTVNWG------NSQGLLNGKP 297 (297)
T ss_pred ceEEEEEEee-ehhhhhhccCceEEEEec------CccceecCCC
Confidence 9999998877 588999999999999983 3358999986
No 9
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=99.40 E-value=7.8e-12 Score=117.67 Aligned_cols=104 Identities=24% Similarity=0.408 Sum_probs=75.1
Q ss_pred ceeeeeecCcceEEEEEEEEEEeCCcceeEEEEEEEEEEeCCCCEEEEeeeEEEEEEeCCCCeEEEEeeeeecCCCcccC
Q 045314 234 HLVSSFFDNYTRVYLHASTELENRSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWW 313 (992)
Q Consensus 234 ~v~~~~~~~~~~a~v~v~~~v~n~~~~~~~~~l~~~v~~~~~g~~~~~~~~~~~~v~l~~~~~~~~~~~~l~i~~P~LWw 313 (992)
++.+.+..+ +.+.+++++.+.|.+.....+++.+.+. +..+..+.. ....+....+......+ .+.+++|+|||
T Consensus 7 ~v~~~~~~~-~~~~v~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~i~~~~lW~ 80 (110)
T PF00703_consen 7 FVTPDLDDD-DSAKVSVEVEVRNESNKPLDVTVRVRLF-DPEGKKVVT---QSPVVSLSAPGQARITL-TIEIPNPKLWS 80 (110)
T ss_dssp EEEEEEETT-SEEEEEEEEEEEEESSSSCEEEEEEEEE-ETTSEEEEE---EEEEEEECCCCEEEEEE-EEEEESS-BBE
T ss_pred EEEEEEcCC-CEEEEEEEEEEEeCCCCcEEEEEEEEEE-CCCCCEEEE---eeeEEEecCCceeEEEE-EEEcCCCCCcC
Confidence 777766655 7899999999999887777888888876 344443321 22333444444433322 47899999999
Q ss_pred CCCCCCCccEEEEEEEEECCCeeeEeEeeeEEEE
Q 045314 314 PNGMGKQSLYTVRISVDVKGYGESDLWSHLFGFR 347 (992)
Q Consensus 314 P~g~G~P~LY~l~v~l~~~g~~~~D~~~~~fG~R 347 (992)
| |+|+||+|+++|..+| +.+|+.+.+||||
T Consensus 81 p---~~P~LY~l~v~l~~~g-~~~d~~~~~~GfR 110 (110)
T PF00703_consen 81 P---EDPYLYTLEVELDDDG-EVLDSIETRFGFR 110 (110)
T ss_dssp S---SSBSEEEEEEEEEETT-EEEEEEEEEEEB-
T ss_pred C---CCceEEEEEEEEEeCC-EEEEEEEeEeeEC
Confidence 9 5999999999997666 6899999999999
No 10
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=98.40 E-value=1.3e-06 Score=95.31 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=76.0
Q ss_pred ceEEE--ECCEeEEEeeeeecCCCC-----cC-C-CCHHHHHHHHHHHHhCCCcEEEccCCCCC---CChHHHHHHHHcC
Q 045314 359 GRLFK--VNGQPIFIRGGNWILSDG-----LL-R-LSKKRYKTDIKFHADMNMNMIRCWGGGLA---ERPEFYHYCDIYG 426 (992)
Q Consensus 359 g~~f~--vNG~pi~lrG~n~~p~d~-----~~-~-~~~e~~~~~l~~~k~~g~N~iR~wgGg~~---e~~~fydlcDe~G 426 (992)
|..|+ -||.++|+||..|-|... +. . .+++..++++.++|++|+|+||+. ++- .++++..++.+.|
T Consensus 15 G~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY--~vdp~~nHd~CM~~~~~aG 92 (314)
T PF03198_consen 15 GNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVY--SVDPSKNHDECMSAFADAG 92 (314)
T ss_dssp TTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES-----TTS--HHHHHHHHHTT
T ss_pred CCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEE--EeCCCCCHHHHHHHHHhCC
Confidence 44566 899999999999976443 22 2 367899999999999999999997 454 4689999999999
Q ss_pred cEEEEecccc-cCCCCCCCCCCCCCCc--ccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCCCc
Q 045314 427 LLVWQEFWIT-GDVDGRGVPVSNPDGP--LDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPP 487 (992)
Q Consensus 427 IlVw~e~~~~-~~~~~~g~~~~~~~~p--~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~~~ 487 (992)
|+|+.|.-.. +.++ ...| .....+++....+|..+.++|=++.+..|||....
T Consensus 93 IYvi~Dl~~p~~sI~--------r~~P~~sw~~~l~~~~~~vid~fa~Y~N~LgFf~GNEVin~ 148 (314)
T PF03198_consen 93 IYVILDLNTPNGSIN--------RSDPAPSWNTDLLDRYFAVIDAFAKYDNTLGFFAGNEVIND 148 (314)
T ss_dssp -EEEEES-BTTBS----------TTS------HHHHHHHHHHHHHHTT-TTEEEEEEEESSS-S
T ss_pred CEEEEecCCCCcccc--------CCCCcCCCCHHHHHHHHHHHHHhccCCceEEEEecceeecC
Confidence 9999998432 1221 1222 33445678888999999999999999999998653
No 11
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.05 E-value=1.8e-05 Score=87.19 Aligned_cols=116 Identities=18% Similarity=0.193 Sum_probs=78.8
Q ss_pred ECCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEccCC--CCC--CC------------hHHHHHHHHcCc
Q 045314 364 VNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGG--GLA--ER------------PEFYHYCDIYGL 427 (992)
Q Consensus 364 vNG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~wgG--g~~--e~------------~~fydlcDe~GI 427 (992)
.||+++.++|.|.+- . .....+.+++.++++|+|+||++.+ .+. .+ +.+.++|.++||
T Consensus 3 ~~G~~v~~~G~n~~w----~--~~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi 76 (281)
T PF00150_consen 3 QNGKPVNWRGFNTHW----Y--NPSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGI 76 (281)
T ss_dssp TTSEBEEEEEEEETT----S--GGGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-
T ss_pred CCCCeEEeeeeeccc----C--CCCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCC
Confidence 489999999999961 1 1116788999999999999998753 111 11 367899999999
Q ss_pred EEEEecccccCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCCCc
Q 045314 428 LVWQEFWITGDVDGRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVPP 487 (992)
Q Consensus 428 lVw~e~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~~~ 487 (992)
.|+-++.-.......+. .....+...+.|.+-++.+++|+++||.|+.|.+.||....
T Consensus 77 ~vild~h~~~~w~~~~~--~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~ 134 (281)
T PF00150_consen 77 YVILDLHNAPGWANGGD--GYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGG 134 (281)
T ss_dssp EEEEEEEESTTCSSSTS--TTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCST
T ss_pred eEEEEeccCcccccccc--ccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCcccc
Confidence 99988754210000000 00111222344555688899999999999999999998654
No 12
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=97.89 E-value=7.9e-05 Score=92.58 Aligned_cols=114 Identities=16% Similarity=0.045 Sum_probs=87.3
Q ss_pred EEEEEEc-cC-CCCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEEECCCCCCCCCCCC
Q 045314 91 FFTTFQC-KL-SENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLVHPPDHPGTIPPEG 168 (992)
Q Consensus 91 Yrr~F~v-p~-~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v~~~~~~~~~p~~~ 168 (992)
|.+.|.+ .. +.+..+.|.|+|+.+.-+|||||+.++...+.+.++++|||+.+++ |.|.+.+.|..-+.....+.
T Consensus 85 ~f~~~~~~~~v~~ng~~~l~~eg~~~~fev~vng~~v~~~~~~~~~~~~dis~~~~~-~~~~~~~~v~~~~~~~~~~~-- 161 (808)
T COG3250 85 YFDAVDTLAKVWLNGQEVLEFQGVYTPFEVDVTGPYVGGGKDSRITVEFDISPNLQT-GPNGLVVTVENWSKGSYYED-- 161 (808)
T ss_pred EEeccccceeEEeCCeEEEEecCceeEEEEeeccceecCCcceEEEEeecccccccc-CCccCceEEeccCCCCCccc--
Confidence 3455554 44 4678999999999999999999999999999999999999999998 78999999985322111111
Q ss_pred CCCCccccccccccCcccCCcccCCCCCCCcccccceEEEEEcceeEecC
Q 045314 169 GQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDP 218 (992)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~GWDW~p~~~~~~~GIwr~V~L~~~~~v~i~d~ 218 (992)
....+++++.+ ||++.+ ...|+|++++|.....-++.+.
T Consensus 162 -------~d~~r~aGi~R--dV~l~i--~p~~~~~di~V~t~~~~~~~~~ 200 (808)
T COG3250 162 -------QDFFRYAGIHR--DVMLYI--TPNTHVDDITVVTHLAEDCNHA 200 (808)
T ss_pred -------cCeeecccccc--eeEEEE--ccceeEeeeEEEEecchhhhhh
Confidence 11223566665 888877 4689999999999877666655
No 13
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.00012 Score=88.67 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=82.6
Q ss_pred ceEEEECCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEc----cCCCCCCC-----------hHHHHHHH
Q 045314 359 GRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRC----WGGGLAER-----------PEFYHYCD 423 (992)
Q Consensus 359 g~~f~vNG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~----wgGg~~e~-----------~~fydlcD 423 (992)
+..|.+-|+++++-|++++|. +++++.+..+|+.||++|+|.+|+ | +.-|+ ..|.+++.
T Consensus 5 ~~~~~~dg~~~~l~gG~y~p~----~~p~~~w~ddl~~mk~~G~N~V~ig~faW--~~~eP~eG~fdf~~~D~~~l~~a~ 78 (673)
T COG1874 5 GYSFIRDGRRILLYGGDYYPE----RWPRETWMDDLRKMKALGLNTVRIGYFAW--NLHEPEEGKFDFTWLDEIFLERAY 78 (673)
T ss_pred ccceeeCCceeEEeccccChH----HCCHHHHHHHHHHHHHhCCCeeEeeeEEe--eccCccccccCcccchHHHHHHHH
Confidence 346899999999999999754 677899999999999999999998 6 33343 24899999
Q ss_pred HcCcEEEEec-c-cccCCC------------CCCCC-------CCCCCCcccHHHHHHHHHHHHHH-hCCCcEEEEEecC
Q 045314 424 IYGLLVWQEF-W-ITGDVD------------GRGVP-------VSNPDGPLDHDLFMLCARDTVKL-LRNHPSLALWVGG 481 (992)
Q Consensus 424 e~GIlVw~e~-~-~~~~~~------------~~g~~-------~~~~~~p~~~~~~~~~~~~~v~r-lrNHPSIi~W~~g 481 (992)
+.||.|+--- | .+|... ..+.. .-|+..|.+.+....-++.+.+| +.|||+|++|-..
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~d 158 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQND 158 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEcc
Confidence 9999998543 3 111100 00000 11222222222111223345677 7899999999999
Q ss_pred CCCCC
Q 045314 482 NEQVP 486 (992)
Q Consensus 482 NE~~~ 486 (992)
||..+
T Consensus 159 neY~~ 163 (673)
T COG1874 159 NEYGG 163 (673)
T ss_pred CccCC
Confidence 99766
No 14
>PLN03059 beta-galactosidase; Provisional
Probab=97.53 E-value=0.0011 Score=81.77 Aligned_cols=123 Identities=21% Similarity=0.256 Sum_probs=81.3
Q ss_pred ceEEEECCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEE---ccCCCCCCC-----------hHHHHHHHH
Q 045314 359 GRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIR---CWGGGLAER-----------PEFYHYCDI 424 (992)
Q Consensus 359 g~~f~vNG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR---~wgGg~~e~-----------~~fydlcDe 424 (992)
++.|.|||+|+++.++..|. .|++++.++..|+.+|+||+|+|= .|..|-+++ .+|+++|.|
T Consensus 34 ~~~f~idG~p~~i~sG~iHY----~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e 109 (840)
T PLN03059 34 HRAFIINGQRRILISGSIHY----PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQA 109 (840)
T ss_pred CCEEEECCEEEEEEEeCccc----CcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHH
Confidence 45799999999999998873 489999999999999999999998 465443333 489999999
Q ss_pred cCcEEEEec-ccccCC-CCCCCCCC---CC--CCcccHHHHHHH----HHHHHHHhCCCc-------EEEEEecCCCCC
Q 045314 425 YGLLVWQEF-WITGDV-DGRGVPVS---NP--DGPLDHDLFMLC----ARDTVKLLRNHP-------SLALWVGGNEQV 485 (992)
Q Consensus 425 ~GIlVw~e~-~~~~~~-~~~g~~~~---~~--~~p~~~~~~~~~----~~~~v~rlrNHP-------SIi~W~~gNE~~ 485 (992)
.||+|+--. |+.|.- +..|.+.. .+ ....+.+.|++. +.+.+.+++.+| .|||--+-||..
T Consensus 110 ~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEYG 188 (840)
T PLN03059 110 AGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEYG 188 (840)
T ss_pred cCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEeccccc
Confidence 999998532 222211 11122111 01 111122334443 334455554333 599999999964
No 15
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=97.30 E-value=0.00024 Score=82.21 Aligned_cols=102 Identities=17% Similarity=0.202 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEccCC--CCCCC----------hHHHHHHHHcCcEEEEeccccc----------C---C
Q 045314 385 LSKKRYKTDIKFHADMNMNMIRCWGG--GLAER----------PEFYHYCDIYGLLVWQEFWITG----------D---V 439 (992)
Q Consensus 385 ~~~e~~~~~l~~~k~~g~N~iR~wgG--g~~e~----------~~fydlcDe~GIlVw~e~~~~~----------~---~ 439 (992)
.+++.++++|++||++|+|+||+.-- ...|+ |.++++|.++||.|.--++.+. + .
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~ 86 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPV 86 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhccccccc
Confidence 46789999999999999999996210 22343 5789999999999975442110 0 0
Q ss_pred CCCCCC-------CCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCCC
Q 045314 440 DGRGVP-------VSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVP 486 (992)
Q Consensus 440 ~~~g~~-------~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~~ 486 (992)
+..|.. ..+...|...+.+.+-++.+++|+++||.|++|.+.||...
T Consensus 87 ~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 87 DADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGY 140 (374)
T ss_dssp -TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTC
T ss_pred CCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCc
Confidence 001100 01122233344444557788899999999999999999754
No 16
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.11 E-value=0.0028 Score=64.60 Aligned_cols=97 Identities=12% Similarity=0.113 Sum_probs=66.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEE---Ec--cCCCCCCC---------------hHHHHHHHHcCcEEEEecccccCCCCCC
Q 045314 384 RLSKKRYKTDIKFHADMNMNMI---RC--WGGGLAER---------------PEFYHYCDIYGLLVWQEFWITGDVDGRG 443 (992)
Q Consensus 384 ~~~~e~~~~~l~~~k~~g~N~i---R~--wgGg~~e~---------------~~fydlcDe~GIlVw~e~~~~~~~~~~g 443 (992)
.+++++++++++.||++|||.| |+ .+.-.+++ +.++++|||+||-|+-...+.+.
T Consensus 16 ~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~----- 90 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLYFDPD----- 90 (166)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCCCCch-----
Confidence 6899999999999999999997 21 11112222 36899999999999988765422
Q ss_pred CCCCCCCCcccHHHH-HHHHHHHHHHhCCCcEEEEEecCCCCCCc
Q 045314 444 VPVSNPDGPLDHDLF-MLCARDTVKLLRNHPSLALWVGGNEQVPP 487 (992)
Q Consensus 444 ~~~~~~~~p~~~~~~-~~~~~~~v~rlrNHPSIi~W~~gNE~~~~ 487 (992)
++.. ..+..+..+ ..-+.+...++.+|||+..|=+-.|..+.
T Consensus 91 -~w~~-~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~~~ 133 (166)
T PF14488_consen 91 -YWDQ-GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEIDDY 133 (166)
T ss_pred -hhhc-cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccCCc
Confidence 1221 111111111 12356667889999999999999998654
No 17
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=96.94 E-value=0.0021 Score=72.58 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=51.4
Q ss_pred EEECCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEc---cCCCCCCC-----------hHHHHHHHHcCc
Q 045314 362 FKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRC---WGGGLAER-----------PEFYHYCDIYGL 427 (992)
Q Consensus 362 f~vNG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~---wgGg~~e~-----------~~fydlcDe~GI 427 (992)
|.|||+|+++-++..|. .|++++.++..|+.+|++|+|+|-+ |.-|-+++ ..|+++|-|.||
T Consensus 2 ~~~~g~~~~~~~Ge~hy----~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl 77 (319)
T PF01301_consen 2 FLIDGKPFFILSGEFHY----FRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGL 77 (319)
T ss_dssp EEETTEEE-EEEEEE-G----GGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-
T ss_pred eEECCEEEEEEEeeecc----ccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCc
Confidence 89999999999999874 3788999999999999999999984 43222221 489999999999
Q ss_pred EEEEec
Q 045314 428 LVWQEF 433 (992)
Q Consensus 428 lVw~e~ 433 (992)
.|+--+
T Consensus 78 ~vilrp 83 (319)
T PF01301_consen 78 YVILRP 83 (319)
T ss_dssp EEEEEE
T ss_pred EEEecc
Confidence 998643
No 18
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=96.56 E-value=0.014 Score=55.38 Aligned_cols=68 Identities=28% Similarity=0.375 Sum_probs=45.4
Q ss_pred eEEEEEEEEccCCCCCeEE-EEE-CCcceeeEEEECCEEeEEEe-CCeeeeEEeCCC-CcCCCCCcEEEEEEEC
Q 045314 88 TFWFFTTFQCKLSENQHLD-LNF-RAINYSAEVYLNGQKRVLQK-GMFRRHSLDVTD-ILHPDGQNLLAVLVHP 157 (992)
Q Consensus 88 ~~WYrr~F~vp~~~~~~v~-L~F-eGvd~~A~V~LNG~~vg~~~-g~f~~~~~DIT~-~Lk~gg~N~L~V~v~~ 157 (992)
..|||.+|..... ...+. |.. .|-.+.+.|||||+.||+.. +.-...+|.|.. .|+. ++|+|.|.++.
T Consensus 36 ~~~Yrg~F~~~~~-~~~~~~l~~~~g~~~~~~vwVNG~~~G~~~~~~g~q~tf~~p~~il~~-~n~v~~vl~~~ 107 (111)
T PF13364_consen 36 YLWYRGTFTGTGQ-DTSLTPLNIQGGNAFRASVWVNGWFLGSYWPGIGPQTTFSVPAGILKY-GNNVLVVLWDN 107 (111)
T ss_dssp EEEEEEEEETTTE-EEEEE-EEECSSTTEEEEEEETTEEEEEEETTTECCEEEEE-BTTBTT-CEEEEEEEEE-
T ss_pred CEEEEEEEeCCCc-ceeEEEEeccCCCceEEEEEECCEEeeeecCCCCccEEEEeCceeecC-CCEEEEEEEeC
Confidence 5799999963211 13444 444 37888999999999999977 333346666766 5665 66677777664
No 19
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.0015 Score=74.43 Aligned_cols=138 Identities=20% Similarity=0.236 Sum_probs=86.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEcc---CCC-------------CCCChHHHHHHHHcCcEEEEecccc-cCCCC--CCC
Q 045314 384 RLSKKRYKTDIKFHADMNMNMIRCW---GGG-------------LAERPEFYHYCDIYGLLVWQEFWIT-GDVDG--RGV 444 (992)
Q Consensus 384 ~~~~e~~~~~l~~~k~~g~N~iR~w---gGg-------------~~e~~~fydlcDe~GIlVw~e~~~~-~~~~~--~g~ 444 (992)
+...+.++++++.++.+|++.+|+| |-. .-.-+.|.+.|-+++|-|.--+-.. -++-+ +-+
T Consensus 22 ~~~~~ei~~dle~a~~vg~k~lR~fiLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~I 101 (587)
T COG3934 22 AIGNREIKADLEPAGFVGVKDLRLFILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRI 101 (587)
T ss_pred HhhhhhhhcccccccCccceeEEEEEecCcchhhhhceecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEe
Confidence 5567788999999999999999999 110 1111579999999999886433211 01100 111
Q ss_pred CCC------C-CCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCCC--ccchHHHHHhhcccCcccccccCCCCccc
Q 045314 445 PVS------N-PDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQVP--PEDINKALKNDLKLHPYFKNSNETGNFTE 515 (992)
Q Consensus 445 ~~~------~-~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (992)
+|. + ...|.+...+.+-+++.|+-++-||.|..|...||..- +...+.. -
T Consensus 102 pwag~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv~~p~s~N~f---------------------~ 160 (587)
T COG3934 102 PWAGEQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLVEAPISVNNF---------------------W 160 (587)
T ss_pred ecCCCCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccccccCChhHH---------------------H
Confidence 111 1 11133344456678899999999999999999999321 1111111 1
Q ss_pred ccccccCCCCccCCCCceeEeC---CCCCC
Q 045314 516 DLSLSVQDPSQYLDGTRIYIQG---SLWDG 542 (992)
Q Consensus 516 ~~~~~~~~~~~~lDptR~y~~s---S~~~g 542 (992)
++...+...++.+||.+.+..+ |||.+
T Consensus 161 ~w~~emy~yiK~ldd~hlvsvGD~~sp~~~ 190 (587)
T COG3934 161 DWSGEMYAYIKWLDDGHLVSVGDPASPWPQ 190 (587)
T ss_pred HHHHHHHHHhhccCCCCeeecCCcCCcccc
Confidence 2334455668889999988754 44543
No 20
>PLN03059 beta-galactosidase; Provisional
Probab=96.17 E-value=0.023 Score=70.51 Aligned_cols=69 Identities=20% Similarity=0.282 Sum_probs=53.2
Q ss_pred EEEEEEEEccCC-----CCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCC--CcCCCCCcEEEEEEECC
Q 045314 89 FWFFTTFQCKLS-----ENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTD--ILHPDGQNLLAVLVHPP 158 (992)
Q Consensus 89 ~WYrr~F~vp~~-----~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~--~Lk~gg~N~L~V~v~~~ 158 (992)
.||+++|.++.. .+....|++..+...+.|||||+.+|+..+......|.+.. -|+. |.|.|.|.+.+-
T Consensus 472 lwY~t~i~~~~~~~~~~~~~~~~L~v~~~~d~~~vFVNg~~~Gt~~~~~~~~~~~~~~~v~l~~-g~n~L~iLse~v 547 (840)
T PLN03059 472 LWYMTEVHIDPDEGFLKTGQYPVLTIFSAGHALHVFINGQLAGTVYGELSNPKLTFSQNVKLTV-GINKISLLSVAV 547 (840)
T ss_pred EEEEEEEeecCCccccccCCCceEEEcccCcEEEEEECCEEEEEEEeecCCcceEEecccccCC-CceEEEEEEEeC
Confidence 699999998542 35677899999999999999999999876655444444432 3555 789999999863
No 21
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=95.50 E-value=0.026 Score=58.02 Aligned_cols=53 Identities=28% Similarity=0.419 Sum_probs=33.8
Q ss_pred eEEEEECCcceeeEEEECCEEeEEEe-----CCee----eeEEeCCCCcCCCCCcEEEEEEECC
Q 045314 104 HLDLNFRAINYSAEVYLNGQKRVLQK-----GMFR----RHSLDVTDILHPDGQNLLAVLVHPP 158 (992)
Q Consensus 104 ~v~L~FeGvd~~A~V~LNG~~vg~~~-----g~f~----~~~~DIT~~Lk~gg~N~L~V~v~~~ 158 (992)
+..|..-+.. .-++||||++|+... -.|. =-.||||++|++ |+|+|+|.+-+-
T Consensus 5 ~A~l~isa~g-~Y~l~vNG~~V~~~~l~P~~t~y~~~~~Y~tyDVt~~L~~-G~N~iav~lg~g 66 (172)
T PF08531_consen 5 SARLYISALG-RYELYVNGERVGDGPLAPGWTDYDKRVYYQTYDVTPYLRP-GENVIAVWLGNG 66 (172)
T ss_dssp --EEEEEEES-EEEEEETTEEEEEE--------BTTEEEEEEEE-TTT--T-TEEEEEEEEEE-
T ss_pred EEEEEEEeCe-eEEEEECCEEeeCCccccccccCCCceEEEEEeChHHhCC-CCCEEEEEEeCC
Confidence 4455555544 779999999998643 1111 137899999998 799999999763
No 22
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=94.69 E-value=0.1 Score=58.32 Aligned_cols=116 Identities=18% Similarity=0.317 Sum_probs=64.0
Q ss_pred eEEE-ECCEeEEEee-eeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEccCCC-------------CC-----------
Q 045314 360 RLFK-VNGQPIFIRG-GNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGG-------------LA----------- 413 (992)
Q Consensus 360 ~~f~-vNG~pi~lrG-~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~wgGg-------------~~----------- 413 (992)
+.|. =+|+|+|.-| ++|. .+.+.+.+..+..|+..|+.|||.||+-.-. .+
T Consensus 3 r~f~~~dG~Pff~lgdT~W~---~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~ 79 (289)
T PF13204_consen 3 RHFVYADGTPFFWLGDTAWS---LFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDF 79 (289)
T ss_dssp SSEEETTS-B--EEEEE-TT---HHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------
T ss_pred ceEecCCCCEEeehhHHHHH---HhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCC
Confidence 4454 7999999999 5662 3347788999999999999999999953111 11
Q ss_pred --CChHHH-------HHHHHcCcEEE-EecccccCC--CCCCCCCCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecC
Q 045314 414 --ERPEFY-------HYCDIYGLLVW-QEFWITGDV--DGRGVPVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGG 481 (992)
Q Consensus 414 --e~~~fy-------dlcDe~GIlVw-~e~~~~~~~--~~~g~~~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~g 481 (992)
..++|+ +.+.++||.+- .-+|. +.+ ..+|... .. ...+....-++.+++|++.-|-|+ |+++
T Consensus 80 ~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg-~~~~~~~Wg~~~--~~--m~~e~~~~Y~~yv~~Ry~~~~Nvi-W~l~ 153 (289)
T PF13204_consen 80 TRPNPAYFDHLDRRIEKANELGIEAALVPFWG-CPYVPGTWGFGP--NI--MPPENAERYGRYVVARYGAYPNVI-WILG 153 (289)
T ss_dssp TT----HHHHHHHHHHHHHHTT-EEEEESS-H-HHHH-------T--TS--S-HHHHHHHHHHHHHHHTT-SSEE-EEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCeEEEEEEEC-Cccccccccccc--cC--CCHHHHHHHHHHHHHHHhcCCCCE-EEec
Confidence 123343 56778999984 22330 111 1112110 01 113444566889999999999887 9999
Q ss_pred CCC
Q 045314 482 NEQ 484 (992)
Q Consensus 482 NE~ 484 (992)
||.
T Consensus 154 gd~ 156 (289)
T PF13204_consen 154 GDY 156 (289)
T ss_dssp SSS
T ss_pred Ccc
Confidence 998
No 23
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=93.69 E-value=0.39 Score=57.73 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=58.4
Q ss_pred ceEEEECCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEE---ccCCCCCCC-----------hHHHHHHHH
Q 045314 359 GRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIR---CWGGGLAER-----------PEFYHYCDI 424 (992)
Q Consensus 359 g~~f~vNG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR---~wgGg~~e~-----------~~fydlcDe 424 (992)
.+.|.+||+|..+-.+..| +.|.+++.+...|+.+|++|+|.|- .|.+|-+++ ..|..+|-+
T Consensus 24 ~~~~~idG~r~~~isGsIH----Y~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl~~~ 99 (649)
T KOG0496|consen 24 KRSLLIDGQRFILISGSIH----YPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKLIHK 99 (649)
T ss_pred ccceeecCCeeEEEEeccc----cccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHHHHH
Confidence 4579999999999888775 2389999999999999999999997 577665544 479999999
Q ss_pred cCcEEEE
Q 045314 425 YGLLVWQ 431 (992)
Q Consensus 425 ~GIlVw~ 431 (992)
.|++|.-
T Consensus 100 ~GLyv~L 106 (649)
T KOG0496|consen 100 AGLYVIL 106 (649)
T ss_pred CCeEEEe
Confidence 9999974
No 24
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=93.23 E-value=0.23 Score=54.38 Aligned_cols=53 Identities=13% Similarity=0.374 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHHHhhccCCCCceEEEEecccCC--cccc-ccceeccCCCCcccccee
Q 045314 654 LVNYIQYRALLEGWSSRMWSKYTGVLIWKNQNP--WTGL-RGQFYDHLLDQTAGFYGC 708 (992)
Q Consensus 654 ~~q~e~~ra~~Ea~r~~~~~~~~G~l~WqlNd~--WP~~-~W~~~Dyy~~pk~~yy~~ 708 (992)
-.||+.++..++..... |.+.|+.+|-+.|. |-.- .=.++|-.++||++|+++
T Consensus 199 ~~qA~~~~~~l~~~~~~--p~v~gi~~Wg~~d~~~W~~~~~~~L~d~~~~~kpa~~~~ 254 (254)
T smart00633 199 QAQAADYEEVFKACLAH--PAVTGVTVWGVTDKYSWLDGGAPLLFDANYQPKPAYWAV 254 (254)
T ss_pred HHHHHHHHHHHHHHHcC--CCeeEEEEeCCccCCcccCCCCceeECCCCCCChhhhcC
Confidence 66788888888888764 67999999998874 4221 125999999999999863
No 25
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=91.31 E-value=0.15 Score=46.28 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=30.3
Q ss_pred HHHHhCCCcEEEEEecCCCCCCccchHHHHHhhcccCcccccccCCCCcccccccccCCCCccCCCCceeEeC
Q 045314 465 TVKLLRNHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKNSNETGNFTEDLSLSVQDPSQYLDGTRIYIQG 537 (992)
Q Consensus 465 ~v~rlrNHPSIi~W~~gNE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lDptR~y~~s 537 (992)
.|.++++||.|++|-+.||...... ..+.... ..........++++....+|++||+.|++.+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~~~~--~~~~~~~--------~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPNNWA--DGYPAEW--------GDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-TT---TT-TT-T--------T-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CchhhcCCCCEEEEEeecCCCCccc--ccccccc--------cchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 3789999999999999999322111 0000000 0000001112333444557899999998754
No 26
>TIGR03356 BGL beta-galactosidase.
Probab=86.28 E-value=2 Score=50.74 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEccC---------CCCCC------ChHHHHHHHHcCcEEEEecccccCCC----CCCCCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCWG---------GGLAE------RPEFYHYCDIYGLLVWQEFWITGDVD----GRGVPV 446 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~wg---------Gg~~e------~~~fydlcDe~GIlVw~e~~~~~~~~----~~g~~~ 446 (992)
.-.+|+++|+++|++|+|++|+.. -|... -+.+.+.|-+.||-++..+... ++. ..|- +
T Consensus 52 ~y~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hf-d~P~~l~~~gG-w 129 (427)
T TIGR03356 52 HYHRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHW-DLPQALEDRGG-W 129 (427)
T ss_pred HHHhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccC-CccHHHHhcCC-C
Confidence 358999999999999999999742 01111 1356789999999999876321 110 0011 1
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 447 SNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 447 ~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
..|...+.|.+-++..++|+.. .|-.|+.-||..
T Consensus 130 ---~~~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~ 163 (427)
T TIGR03356 130 ---LNRDTAEWFAEYAAVVAERLGD--RVKHWITLNEPW 163 (427)
T ss_pred ---CChHHHHHHHHHHHHHHHHhCC--cCCEEEEecCcc
Confidence 1234456788889999999987 466778888874
No 27
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=86.10 E-value=4.9 Score=47.26 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=63.8
Q ss_pred HHHHHHHHhCCCcEEEccCCCCC-------CC-----h------HHHHHHHHcCcEEEEec-ccccCCCCCCCCCCCCCC
Q 045314 391 KTDIKFHADMNMNMIRCWGGGLA-------ER-----P------EFYHYCDIYGLLVWQEF-WITGDVDGRGVPVSNPDG 451 (992)
Q Consensus 391 ~~~l~~~k~~g~N~iR~wgGg~~-------e~-----~------~fydlcDe~GIlVw~e~-~~~~~~~~~g~~~~~~~~ 451 (992)
+.++.++|++|||+||+--|... .+ + +.-+.|.++||.||.|+ +..|.++....-.....|
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 78899999999999996433111 11 2 33677889999999995 444322221111111122
Q ss_pred cc---cHHHHHHHHHHHHHHhCCCcEEEEEecCCCCCC
Q 045314 452 PL---DHDLFMLCARDTVKLLRNHPSLALWVGGNEQVP 486 (992)
Q Consensus 452 p~---~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~~ 486 (992)
.. ..+.+.+..+....|+++-+-|+..-.-||...
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 21 235567778899999999888998999999873
No 28
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=86.05 E-value=3.4 Score=50.02 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=43.2
Q ss_pred eEEEEEC-CcceeeEEEECCEEeEEEeCCeeeeEEeCCCC--cCCCCCcEEEEEEECC
Q 045314 104 HLDLNFR-AINYSAEVYLNGQKRVLQKGMFRRHSLDVTDI--LHPDGQNLLAVLVHPP 158 (992)
Q Consensus 104 ~v~L~Fe-Gvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~--Lk~gg~N~L~V~v~~~ 158 (992)
...|... ++...+.|||||+.+|.-.|.+....+.++.- |+. |+|.|++.+.+.
T Consensus 434 ~t~~~i~ls~g~~~hVfvNg~~~G~~~g~~~~~~~~~~~~~~l~~-g~n~l~iL~~~~ 490 (649)
T KOG0496|consen 434 TTSLKIPLSLGHALHVFVNGEFAGSLHGNNEKIKLNLSQPVGLKA-GENKLALLSENV 490 (649)
T ss_pred CceEeecccccceEEEEECCEEeeeEeccccceeEEeeccccccc-CcceEEEEEEec
Confidence 4445556 99999999999999999999887677766653 445 899999999874
No 29
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=78.31 E-value=7.9 Score=46.39 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcc---------CCCCCCC------hHHHHHHHHcCcEEEEecccccCCC----CCCCCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCW---------GGGLAER------PEFYHYCDIYGLLVWQEFWITGDVD----GRGVPV 446 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~w---------gGg~~e~------~~fydlcDe~GIlVw~e~~~~~~~~----~~g~~~ 446 (992)
.-.+|+.||++||+||+|+.|+. |-|.... +.+.+.|-+.||--+.-+... ++. ..|-+
T Consensus 52 ~Y~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~-dlP~~L~~~GGW- 129 (469)
T PRK13511 52 FYHRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHF-DTPEALHSNGDW- 129 (469)
T ss_pred hhhhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCC-CCcHHHHHcCCC-
Confidence 35789999999999999999974 2111111 356789999999877644211 110 01111
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 447 SNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 447 ~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
..+...+.|.+-++-.++++.. |=.|+--||..
T Consensus 130 ---~n~~~v~~F~~YA~~~~~~fgd---Vk~W~T~NEP~ 162 (469)
T PRK13511 130 ---LNRENIDHFVRYAEFCFEEFPE---VKYWTTFNEIG 162 (469)
T ss_pred ---CCHHHHHHHHHHHHHHHHHhCC---CCEEEEccchh
Confidence 1234456788889999999988 89999999974
No 30
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=77.78 E-value=9.8 Score=44.22 Aligned_cols=45 Identities=20% Similarity=0.581 Sum_probs=30.6
Q ss_pred CHHHHHHH-HHHHHhCCCcEEEccCCCCCCC-------------------------------hHHHHHHHHcCcEEE
Q 045314 386 SKKRYKTD-IKFHADMNMNMIRCWGGGLAER-------------------------------PEFYHYCDIYGLLVW 430 (992)
Q Consensus 386 ~~e~~~~~-l~~~k~~g~N~iR~wgGg~~e~-------------------------------~~fydlcDe~GIlVw 430 (992)
+.+-+|++ |+++|++.+-.||--||..... .+|.++|...|.-..
T Consensus 46 d~~G~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~Gt~EF~~~~e~iGaep~ 122 (501)
T COG3534 46 DERGFRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFGTHEFMDWCELIGAEPY 122 (501)
T ss_pred chhhhHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhcccccccccccccHHHHHHHHHHhCCceE
Confidence 44555554 5788999999999655432210 389999999887544
No 31
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=76.19 E-value=2.3 Score=48.23 Aligned_cols=60 Identities=13% Similarity=0.182 Sum_probs=47.1
Q ss_pred HHHHHhHHHHHHHHHHHhhccCCC--CceEEEEecccCCcccccc------ceeccCCCCccccceeecc
Q 045314 650 LKAQLVNYIQYRALLEGWSSRMWS--KYTGVLIWKNQNPWTGLRG------QFYDHLLDQTAGFYGCRCA 711 (992)
Q Consensus 650 ~~sQ~~q~e~~ra~~Ea~r~~~~~--~~~G~l~WqlNd~WP~~~W------~~~Dyy~~pk~~yy~~k~a 711 (992)
-..+..||+.++..++.+.+. | .+.|+..|-+.|.-.-..- .++|-.++||++|++++++
T Consensus 252 ~~~~~~qA~~~~~~~~~~~~~--~~~~v~git~Wg~~D~~sW~~~~~~~~~~lfd~~~~~Kpa~~~~~~a 319 (320)
T PF00331_consen 252 AEEEEAQAEYYRDFLTACFSH--PPAAVEGITWWGFTDGYSWRPDTPPDRPLLFDEDYQPKPAYDAIVDA 319 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--THCTEEEEEESSSBTTGSTTGGHSEG--SSB-TTSBB-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhC--CccCCCEEEEECCCCCCcccCCCCCCCCeeECCCcCCCHHHHHHHhc
Confidence 556788999999999998875 6 7999999999995322222 6999999999999998765
No 32
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=75.35 E-value=4 Score=48.94 Aligned_cols=92 Identities=17% Similarity=0.201 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEccC----------CCCCCC------hHHHHHHHHcCcEEEEecccccCCC----CC-CCC
Q 045314 387 KKRYKTDIKFHADMNMNMIRCWG----------GGLAER------PEFYHYCDIYGLLVWQEFWITGDVD----GR-GVP 445 (992)
Q Consensus 387 ~e~~~~~l~~~k~~g~N~iR~wg----------Gg~~e~------~~fydlcDe~GIlVw~e~~~~~~~~----~~-g~~ 445 (992)
-.+|+.||++||+||+|+.|+.. ++.+.. +.+.+.|-+.||-.+..+... ++. .. |-
T Consensus 68 Yhry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~-dlP~~L~~~yGG- 145 (477)
T PRK15014 68 YGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHF-EMPLHLVQQYGS- 145 (477)
T ss_pred ccccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-CCCHHHHHhcCC-
Confidence 47899999999999999999641 111111 356789999999888765321 110 00 11
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 446 VSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 446 ~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
| ..+...+.|.+-++-.++++... |=.|+--||..
T Consensus 146 W---~n~~~~~~F~~Ya~~~f~~fgdr--Vk~WiT~NEp~ 180 (477)
T PRK15014 146 W---TNRKVVDFFVRFAEVVFERYKHK--VKYWMTFNEIN 180 (477)
T ss_pred C---CChHHHHHHHHHHHHHHHHhcCc--CCEEEEecCcc
Confidence 1 12444577888899999999887 67899999964
No 33
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=72.36 E-value=15 Score=41.83 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=46.6
Q ss_pred HHHHHHHHhCCCcEEE--ccCC----CCCCCh---HHHHHHHHcCcEEEEecccccCCCCCCCCCCCCCCcc-cHHHHH-
Q 045314 391 KTDIKFHADMNMNMIR--CWGG----GLAERP---EFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPL-DHDLFM- 459 (992)
Q Consensus 391 ~~~l~~~k~~g~N~iR--~wgG----g~~e~~---~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~~~~~p~-~~~~~~- 459 (992)
+..|+++|+.|+|+|| +|.- |++.-+ +.-..+-++||-|+-||-++-.....|....-..|.. +.+...
T Consensus 27 ~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~ 106 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAK 106 (332)
T ss_dssp --HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHH
T ss_pred CCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHH
Confidence 4578999999999987 5621 222222 3456677899999999975311111121110012222 122222
Q ss_pred ---HHHHHHHHHhCCC-cEEEEEecCCCCC
Q 045314 460 ---LCARDTVKLLRNH-PSLALWVGGNEQV 485 (992)
Q Consensus 460 ---~~~~~~v~rlrNH-PSIi~W~~gNE~~ 485 (992)
+..++.+..|++. -..-|..+|||..
T Consensus 107 ~v~~yT~~vl~~l~~~G~~pd~VQVGNEin 136 (332)
T PF07745_consen 107 AVYDYTKDVLQALKAAGVTPDMVQVGNEIN 136 (332)
T ss_dssp HHHHHHHHHHHHHHHTT--ESEEEESSSGG
T ss_pred HHHHHHHHHHHHHHHCCCCccEEEeCcccc
Confidence 2345566666533 4467788999973
No 34
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=69.96 E-value=17 Score=43.60 Aligned_cols=92 Identities=16% Similarity=0.184 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcc---------CCCCCCC------hHHHHHHHHcCcEEEEecccccCCC----CCCCCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCW---------GGGLAER------PEFYHYCDIYGLLVWQEFWITGDVD----GRGVPV 446 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~w---------gGg~~e~------~~fydlcDe~GIlVw~e~~~~~~~~----~~g~~~ 446 (992)
.-.+|+.||++||+||+|+.|+. |-|.... +.+.+.|-+.||-.+.-+... ++. ..|-+
T Consensus 51 ~yhry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~-dlP~~L~~~GGW- 128 (467)
T TIGR01233 51 FYHKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHF-DTPEALHSNGDF- 128 (467)
T ss_pred hhhhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCC-CCcHHHHHcCCC-
Confidence 35799999999999999999974 2111111 245578899999887643211 110 01111
Q ss_pred CCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 447 SNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 447 ~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
..+...+.|.+-++-.++++. . |=.|+--||..
T Consensus 129 ---~n~~~v~~F~~YA~~~f~~fg-d--Vk~WiT~NEP~ 161 (467)
T TIGR01233 129 ---LNRENIEHFIDYAAFCFEEFP-E--VNYWTTFNEIG 161 (467)
T ss_pred ---CCHHHHHHHHHHHHHHHHHhC-C--CCEEEEecchh
Confidence 123445778888999999997 3 88999999974
No 35
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=64.70 E-value=60 Score=32.12 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=50.6
Q ss_pred eEEEEEeCCCccccceEEEEEEEEccC-CceeeEEeEEEEeCCCCeEEEEeeecCCCCCCCceEEEEEEEEE
Q 045314 724 YFIEVVNTTSQELSDVAIEASVWDLDG-ACPYYKVTEKLSVPPKKVVSIAEMKYPKTKNPKPVYFLLLKLYN 794 (992)
Q Consensus 724 ~~v~vvN~~~~~~~~~~l~v~~~d~~g-~~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~l~l~L~d 794 (992)
..+.+-|..+.-+++++++.+|++-++ ++++........++||+...+ .+++....-..+.|-|.+.+..
T Consensus 46 i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~f~~-~i~~~~~~lk~G~Y~l~~~~~~ 116 (140)
T PF11797_consen 46 IQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSNFNF-PIPLGGKKLKPGKYTLKITAKS 116 (140)
T ss_pred EEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCeEEe-EecCCCcCccCCEEEEEEEEEc
Confidence 445689999999999999999999987 455555555789999988765 2444321222466888888864
No 36
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=62.26 E-value=14 Score=37.75 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=36.5
Q ss_pred EEEEEccC-C--CCCeEEEEECCc--ceeeEEEECCEEeE----------------EEeCCeeeeEEeCCC-CcCCCCCc
Q 045314 92 FTTFQCKL-S--ENQHLDLNFRAI--NYSAEVYLNGQKRV----------------LQKGMFRRHSLDVTD-ILHPDGQN 149 (992)
Q Consensus 92 rr~F~vp~-~--~~~~v~L~FeGv--d~~A~V~LNG~~vg----------------~~~g~f~~~~~DIT~-~Lk~gg~N 149 (992)
.=.|.++. . +...+.|.+-+. ...-+|.|||.... .|.|-|.-++|+|.. .|+. |+|
T Consensus 66 ~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg~~~~~~~~~~~~d~~~~r~g~~~G~~~~~~~~ipa~~L~~-G~N 144 (167)
T PF14683_consen 66 TIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNGWSGPFPSAPFGNDNAIYRSGIHRGNYRLYEFDIPASLLKA-GEN 144 (167)
T ss_dssp EEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETTEE-----------S--GGGT---S---EEEEEE-TTSS-S-EEE
T ss_pred EEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcCccCCccccccCCCCceeeCceecccEEEEEEEEcHHHEEe-ccE
Confidence 34788864 2 234444555444 45669999994321 245888999999986 6776 899
Q ss_pred EEEEEEEC
Q 045314 150 LLAVLVHP 157 (992)
Q Consensus 150 ~L~V~v~~ 157 (992)
+|.+.+.+
T Consensus 145 ti~lt~~~ 152 (167)
T PF14683_consen 145 TITLTVPS 152 (167)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEcc
Confidence 99999875
No 37
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=61.52 E-value=19 Score=43.16 Aligned_cols=93 Identities=22% Similarity=0.263 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEccC----------CCCCCC------hHHHHHHHHcCcEEEEecccccCCCC-----CCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCWG----------GGLAER------PEFYHYCDIYGLLVWQEFWITGDVDG-----RGV 444 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~wg----------Gg~~e~------~~fydlcDe~GIlVw~e~~~~~~~~~-----~g~ 444 (992)
.-.+|+.++++|+++|+|+.|+.. ++.+.. +.+.+.|-+.||-++..+... ++.. .|-
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~-~~P~~l~~~~GG 147 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHF-DVPMHLVTEYGS 147 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCC-CCCHHHHHhcCC
Confidence 357899999999999999999641 111111 356689999999887755321 1100 011
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 445 PVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 445 ~~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
|. .+...+.|.+-++..++|+..+ |=.|+--||..
T Consensus 148 -W~---~~~~~~~F~~ya~~~~~~fgd~--Vk~WiTfNEPn 182 (474)
T PRK09852 148 -WR---NRKMVEFFSRYARTCFEAFDGL--VKYWLTFNEIN 182 (474)
T ss_pred -CC---CHHHHHHHHHHHHHHHHHhcCc--CCeEEeecchh
Confidence 11 1334567888899999999876 34688888863
No 38
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=60.77 E-value=21 Score=44.23 Aligned_cols=64 Identities=25% Similarity=0.350 Sum_probs=49.7
Q ss_pred EEEccC----CCCCeEEEEECCc--------ceeeEEEECCEEeEE------EeCCeeeeEEeCCCCcCCCCCcEEEEEE
Q 045314 94 TFQCKL----SENQHLDLNFRAI--------NYSAEVYLNGQKRVL------QKGMFRRHSLDVTDILHPDGQNLLAVLV 155 (992)
Q Consensus 94 ~F~vp~----~~~~~v~L~FeGv--------d~~A~V~LNG~~vg~------~~g~f~~~~~DIT~~Lk~gg~N~L~V~v 155 (992)
.|.+|. +.++.+.|++... ....+|+|||+.|++ ..+.+..+++.|..++.+ |.|.|.+.|
T Consensus 329 ~f~lP~dl~~~~~~~i~l~L~y~y~~~~~~~~S~l~V~vNg~~i~s~~L~~~~~~~~~~~~v~iP~~~~~-~~N~l~~~f 407 (605)
T PF03170_consen 329 NFRLPPDLFAWDGSGIPLHLRYRYTPGLDFDGSRLTVYVNGQFIGSLPLTPADGAGFDRYTVSIPRLLLP-GRNQLQFEF 407 (605)
T ss_pred EeeCCccccccCCCceEEEEEEecCCCCCCCCcEEEEEECCEEEEeEECCCCCCCccceeEEecCchhcC-CCcEEEEEE
Confidence 566765 4677777776544 446799999999985 357788999999987776 899999999
Q ss_pred ECC
Q 045314 156 HPP 158 (992)
Q Consensus 156 ~~~ 158 (992)
+-.
T Consensus 408 ~l~ 410 (605)
T PF03170_consen 408 DLP 410 (605)
T ss_pred Eee
Confidence 743
No 39
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=58.61 E-value=16 Score=35.33 Aligned_cols=35 Identities=17% Similarity=0.366 Sum_probs=28.7
Q ss_pred eEeCCCCeEEEEEEEecCCCCccEEEEEeeecCcc
Q 045314 954 FSLAPGEVMPIKISFEVPHGVTPKVTLHGWNYHVG 988 (992)
Q Consensus 954 ~tl~Pge~~~~~~~~~~~~~~~~~~~v~g~n~~~~ 988 (992)
|||.|||+++|++++..++..-.=+.+.|+++.++
T Consensus 87 Vtl~~~~sk~V~~~i~~P~~~f~G~ilGGi~~~ek 121 (121)
T PF06030_consen 87 VTLPPNESKTVTFTIKMPKKAFDGIILGGIYFSEK 121 (121)
T ss_pred EEECCCCEEEEEEEEEcCCCCcCCEEEeeEEEEeC
Confidence 99999999999999887775445577899988654
No 40
>PLN02849 beta-glucosidase
Probab=56.93 E-value=27 Score=42.29 Aligned_cols=93 Identities=19% Similarity=0.227 Sum_probs=61.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcc---------CCCCCCC------hHHHHHHHHcCcEEEEecccccCCC----CC-CCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCW---------GGGLAER------PEFYHYCDIYGLLVWQEFWITGDVD----GR-GVP 445 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~w---------gGg~~e~------~~fydlcDe~GIlVw~e~~~~~~~~----~~-g~~ 445 (992)
.-.+|+.||++||+||+|+.|+. |.|.... +.+.+.|-+.||--+.-+... ++. .. |-
T Consensus 77 ~YhrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~-dlP~~L~~~yGG- 154 (503)
T PLN02849 77 GYHKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHY-DHPQYLEDDYGG- 154 (503)
T ss_pred HHHhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCC-CCcHHHHHhcCC-
Confidence 35899999999999999999975 2121111 356789999999877643211 110 00 11
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 446 VSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 446 ~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
|. .+...+.|.+-++..++++... |=.|+--||..
T Consensus 155 W~---nr~~v~~F~~YA~~~f~~fgDr--Vk~WiT~NEP~ 189 (503)
T PLN02849 155 WI---NRRIIKDFTAYADVCFREFGNH--VKFWTTINEAN 189 (503)
T ss_pred cC---CchHHHHHHHHHHHHHHHhcCc--CCEEEEecchh
Confidence 11 2334567888888899998764 56788888864
No 41
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=55.91 E-value=67 Score=35.16 Aligned_cols=86 Identities=17% Similarity=0.199 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEccCCCCCCChHHHHHHHHcCcEEEEecccccCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHDLFMLCARDT 465 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~wgGg~~e~~~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~ 465 (992)
+.+.++.+|++++.... +||+.|--.-.-+....++-..||-|....|..- ..++...+.+..+
T Consensus 61 Sa~~~~sDLe~l~~~t~-~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~td---------------d~~~~~~~til~a 124 (305)
T COG5309 61 SADQVASDLELLASYTH-SIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTD---------------DIHDAVEKTILSA 124 (305)
T ss_pred CHHHHHhHHHHhccCCc-eEEEeeccchhhhhhHHHHHhcCceEEEEEeecc---------------chhhhHHHHHHHH
Confidence 67899999999999987 9999862222236788999999999998876521 1122233367778
Q ss_pred HHHhCCCcEEEEEecCCCCCCc
Q 045314 466 VKLLRNHPSLALWVGGNEQVPP 487 (992)
Q Consensus 466 v~rlrNHPSIi~W~~gNE~~~~ 487 (992)
++-..--++|..-.+|||....
T Consensus 125 y~~~~~~d~v~~v~VGnEal~r 146 (305)
T COG5309 125 YLPYNGWDDVTTVTVGNEALNR 146 (305)
T ss_pred HhccCCCCceEEEEechhhhhc
Confidence 8888899999999999997543
No 42
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=55.15 E-value=42 Score=40.37 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcc---------C-CCCCCC------hHHHHHHHHcCcEEEEec-----ccccCCCCCCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCW---------G-GGLAER------PEFYHYCDIYGLLVWQEF-----WITGDVDGRGV 444 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~w---------g-Gg~~e~------~~fydlcDe~GIlVw~e~-----~~~~~~~~~g~ 444 (992)
.-.+|+.||++||+||+|+.|+. | ++.... +.+.+.|=+.||-.+.-+ |.+-. ...|-
T Consensus 71 ~Yhry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~-~~~GG 149 (478)
T PRK09593 71 MYHHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLI-EEYGG 149 (478)
T ss_pred hHHhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHH-hhcCC
Confidence 35899999999999999999974 2 111111 356688999999776543 22100 00011
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 445 PVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 445 ~~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
|. .+...+.|.+-++-.++++... |=.|+--||..
T Consensus 150 -W~---n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP~ 184 (478)
T PRK09593 150 -WR---NRKMVGFYERLCRTLFTRYKGL--VKYWLTFNEIN 184 (478)
T ss_pred -CC---ChHHHHHHHHHHHHHHHHhcCc--CCEEEeecchh
Confidence 11 1334566888888888988764 45677778853
No 43
>PLN02998 beta-glucosidase
Probab=53.49 E-value=32 Score=41.58 Aligned_cols=93 Identities=19% Similarity=0.148 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcc---------CCCCCCC------hHHHHHHHHcCcEEEEec-----ccccCCCCCCCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCW---------GGGLAER------PEFYHYCDIYGLLVWQEF-----WITGDVDGRGVP 445 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~w---------gGg~~e~------~~fydlcDe~GIlVw~e~-----~~~~~~~~~g~~ 445 (992)
.-.+|++||++||+||+|+.|+. |-|.... +.+.+.|-+.||-.+.-+ |.+-.. .-|-
T Consensus 80 ~Yhry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~-~yGG- 157 (497)
T PLN02998 80 QYHKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALED-EYGG- 157 (497)
T ss_pred HHHhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH-hhCC-
Confidence 35899999999999999999975 2121111 356789999999766433 321000 0011
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 446 VSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 446 ~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
|. .+...+.|.+-++-.++++... |=.|+--||..
T Consensus 158 W~---n~~~v~~F~~YA~~~~~~fgdr--Vk~WiT~NEP~ 192 (497)
T PLN02998 158 WL---SQEIVRDFTAYADTCFKEFGDR--VSHWTTINEVN 192 (497)
T ss_pred cC---CchHHHHHHHHHHHHHHHhcCc--CCEEEEccCcc
Confidence 11 2334567888888899998765 55788888864
No 44
>COG4885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=53.24 E-value=1.1e+02 Score=33.22 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=54.4
Q ss_pred eEEEEEeCCCccccceEEEEEEEEccCCceeeEEeEEEEeCCCCeEEE--EeeecCCCCCCCceEEEEEEEEEcCCCeEE
Q 045314 724 YFIEVVNTTSQELSDVAIEASVWDLDGACPYYKVTEKLSVPPKKVVSI--AEMKYPKTKNPKPVYFLLLKLYNMSDYGII 801 (992)
Q Consensus 724 ~~v~vvN~~~~~~~~~~l~v~~~d~~g~~~~~~~~~~~~i~~~~~~~v--~~~~~~~~~~~~~~~~l~l~L~d~~~g~~~ 801 (992)
..+|+.|+...+-.++.+.+.+.-.|+.++..+....++.-...++.+ .++..|+ .-.|+|.+.++. +|+++
T Consensus 163 ~~~YltnhGa~~s~Dv~~~ikVrqaDsnvla~~~w~~v~~~kp~ttVv~na~~~vPd----~YNY~v~~~vw~--ng~iV 236 (312)
T COG4885 163 ARFYLTNHGAVKSYDVVARIKVRQADSNVLAGESWKNVTLQKPKTTVVSNAEFEVPD----DYNYVVKLDVWR--NGKIV 236 (312)
T ss_pred EEEEEecCCCCCCcceEEEEEEEeccCCceeeeeeeeeeccCCCceEeccceeecCc----ccceEEEEEEee--CCEEE
Confidence 467899999988888899999999999998777666665443333333 3455564 234889999986 78877
Q ss_pred eee
Q 045314 802 SRN 804 (992)
Q Consensus 802 s~N 804 (992)
-+-
T Consensus 237 ~~~ 239 (312)
T COG4885 237 KSW 239 (312)
T ss_pred eeh
Confidence 653
No 45
>PLN02814 beta-glucosidase
Probab=51.93 E-value=43 Score=40.51 Aligned_cols=93 Identities=19% Similarity=0.197 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcc---------CCCCCCC------hHHHHHHHHcCcEEEEe-----cccccCCCCCCCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCW---------GGGLAER------PEFYHYCDIYGLLVWQE-----FWITGDVDGRGVP 445 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~w---------gGg~~e~------~~fydlcDe~GIlVw~e-----~~~~~~~~~~g~~ 445 (992)
.-.+|+.||++||+||+|+.|+. |-|.... +.+.+.|-+.||-.+.- +|.+-.- ..|-
T Consensus 75 ~Yhry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~-~yGG- 152 (504)
T PLN02814 75 GYHKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLED-EYGG- 152 (504)
T ss_pred HHHhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHH-hcCC-
Confidence 35899999999999999999974 2121111 35668999999976653 3321000 0011
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 446 VSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 446 ~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
|. .+...+.|.+-++..++++... |=.|+--||..
T Consensus 153 W~---n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEP~ 187 (504)
T PLN02814 153 WI---NRKIIEDFTAFADVCFREFGED--VKLWTTINEAT 187 (504)
T ss_pred cC---ChhHHHHHHHHHHHHHHHhCCc--CCEEEeccccc
Confidence 11 1334567888888899998765 56788888874
No 46
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=51.12 E-value=20 Score=42.40 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEcc---------CCC-CCCC------hHHHHHHHHcCcEEEEec-----ccccCCCCCCCC
Q 045314 387 KKRYKTDIKFHADMNMNMIRCW---------GGG-LAER------PEFYHYCDIYGLLVWQEF-----WITGDVDGRGVP 445 (992)
Q Consensus 387 ~e~~~~~l~~~k~~g~N~iR~w---------gGg-~~e~------~~fydlcDe~GIlVw~e~-----~~~~~~~~~g~~ 445 (992)
-.+|+.++++||+||+|+.|+. |++ .+.. +..+|.|-++||--+.-+ |.+-.- ..|-
T Consensus 58 YhrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~-~ygG- 135 (460)
T COG2723 58 YHRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQK-PYGG- 135 (460)
T ss_pred hhhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhh-ccCC-
Confidence 5899999999999999999974 333 1111 356789999999987643 321000 0011
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 446 VSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 446 ~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
|.+ ...-+.|..-++...+|+..- |=-|...||..
T Consensus 136 W~n---R~~i~~F~~ya~~vf~~f~dk--Vk~W~TFNE~n 170 (460)
T COG2723 136 WEN---RETVDAFARYAATVFERFGDK--VKYWFTFNEPN 170 (460)
T ss_pred ccC---HHHHHHHHHHHHHHHHHhcCc--ceEEEEecchh
Confidence 111 223456777788888888743 56788888874
No 47
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=48.15 E-value=76 Score=34.95 Aligned_cols=79 Identities=16% Similarity=-0.002 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCCCCC-CC-------------hHHHHHHHHcCcEEEEecccccCCCCCCCCCCCCCCc
Q 045314 387 KKRYKTDIKFHADMNMNMIRCWGGGLA-ER-------------PEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGP 452 (992)
Q Consensus 387 ~e~~~~~l~~~k~~g~N~iR~wgGg~~-e~-------------~~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~~~~~p 452 (992)
.+.+++.+++++++|.+.|+++++... .. .+.-++|.++||.+--|.... . +-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~-~------------~~ 159 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDT-P------------FM 159 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCC-c------------hh
Confidence 456889999999999999999864322 11 145678889999999885310 0 00
Q ss_pred ccHHHHHHHHHHHHHHhCCCcEE-EEEecCCC
Q 045314 453 LDHDLFMLCARDTVKLLRNHPSL-ALWVGGNE 483 (992)
Q Consensus 453 ~~~~~~~~~~~~~v~rlrNHPSI-i~W~~gNE 483 (992)
.. ..++.++++++ +||.+ +.|..+|=
T Consensus 160 ~t----~~~~~~li~~v-~~~~v~~~~D~~h~ 186 (279)
T TIGR00542 160 SS----ISKWLKWDHYL-NSPWFTLYPDIGNL 186 (279)
T ss_pred cC----HHHHHHHHHHc-CCCceEEEeCcChh
Confidence 00 12344555555 67887 66777764
No 48
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=47.25 E-value=51 Score=36.00 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=46.8
Q ss_pred CCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEccCCCCCCC--------------hHHHHHHHHcCcEEE
Q 045314 365 NGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGGLAER--------------PEFYHYCDIYGLLVW 430 (992)
Q Consensus 365 NG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~wgGg~~e~--------------~~fydlcDe~GIlVw 430 (992)
|+..+++-|-|=.. +.|.++..-+.+|++|.+++| ||-+-+. ...=+.||++|+.|.
T Consensus 43 ~~~~~viAGPCsvE-------s~E~i~~~A~~vk~~Ga~~lR--GgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vv 113 (286)
T COG2876 43 GRALRVIAGPCSVE-------SEEQVRETAESVKAAGAKALR--GGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVV 113 (286)
T ss_pred CcceEEEecCcccC-------CHHHHHHHHHHHHHcchhhcc--CCcCCCCCCcccccccCHHHHHHHHHHHHHcCCeeE
Confidence 33467777776643 578888889999999999999 4433222 245689999999999
Q ss_pred Eeccc
Q 045314 431 QEFWI 435 (992)
Q Consensus 431 ~e~~~ 435 (992)
.|.|.
T Consensus 114 tEvm~ 118 (286)
T COG2876 114 TEVMD 118 (286)
T ss_pred EEecC
Confidence 99974
No 49
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=47.22 E-value=71 Score=38.42 Aligned_cols=93 Identities=19% Similarity=0.219 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcc---------C-CCCCCC------hHHHHHHHHcCcEEEEecccccCCC-----CCCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCW---------G-GGLAER------PEFYHYCDIYGLLVWQEFWITGDVD-----GRGV 444 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~w---------g-Gg~~e~------~~fydlcDe~GIlVw~e~~~~~~~~-----~~g~ 444 (992)
.-.+|+.||++||+||+|+.|+. | ++.... +.+.+.|-+.||-.+.-+... ++. ..|-
T Consensus 65 ~Yhry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~-dlP~~L~~~yGG 143 (476)
T PRK09589 65 FYHRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHF-EMPYHLVTEYGG 143 (476)
T ss_pred HHHhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCC-CCCHHHHHhcCC
Confidence 35899999999999999999964 1 111111 356689999999776543211 110 0011
Q ss_pred CCCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 045314 445 PVSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQV 485 (992)
Q Consensus 445 ~~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~~ 485 (992)
+ . .+...+.|.+-++-.++++... |=.|+--||..
T Consensus 144 W-~---n~~~i~~F~~YA~~~f~~fgdr--Vk~WiT~NEp~ 178 (476)
T PRK09589 144 W-R---NRKLIDFFVRFAEVVFTRYKDK--VKYWMTFNEIN 178 (476)
T ss_pred c-C---ChHHHHHHHHHHHHHHHHhcCC--CCEEEEecchh
Confidence 1 1 1334567888888889988754 45788888864
No 50
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=46.08 E-value=30 Score=29.55 Aligned_cols=40 Identities=30% Similarity=0.403 Sum_probs=25.8
Q ss_pred EEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcEEEEEE
Q 045314 107 LNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNLLAVLV 155 (992)
Q Consensus 107 L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~L~V~v 155 (992)
|.+..--.-|+|||||+.+|.. |..+. + |.+ |.+.|.|+-
T Consensus 4 l~V~s~p~gA~V~vdg~~~G~t-----p~~~~--~-l~~-G~~~v~v~~ 43 (71)
T PF08308_consen 4 LRVTSNPSGAEVYVDGKYIGTT-----PLTLK--D-LPP-GEHTVTVEK 43 (71)
T ss_pred EEEEEECCCCEEEECCEEeccC-----cceee--e-cCC-ccEEEEEEE
Confidence 4444555679999999999943 33332 1 445 777777765
No 51
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=45.51 E-value=73 Score=28.60 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=38.4
Q ss_pred CCCcceEEeecCCCce--eeEEEEEEEecCCCCCCCCCCceeeceEEeccee-EeCCCCeEEEEEEEecCCCC--ccEEE
Q 045314 905 DTDSLKVAELNGTDSG--VAFFLHFSVRGWSKSHKEGEDTRILPVHYSDNYF-SLAPGEVMPIKISFEVPHGV--TPKVT 979 (992)
Q Consensus 905 ~~~~~~~~~~~~~~~~--~a~f~~l~l~~~~~~~~~~~~~~v~P~~~sDNy~-tl~Pge~~~~~~~~~~~~~~--~~~~~ 979 (992)
+....+++.+.|.+.. -.|.+++.+- |..+ +.-+| +|-|||+.++++.+...... ...+.
T Consensus 18 g~~~~i~~~V~N~G~~~~~~~~v~~~~~----------~~~~-----~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~ 82 (101)
T PF07705_consen 18 GEPVTITVTVKNNGTADAENVTVRLYLD----------GNSV-----STVTIPSLAPGESETVTFTWTPPSPGSYTIRVV 82 (101)
T ss_dssp TSEEEEEEEEEE-SSS-BEEEEEEEEET----------TEEE-----EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEE
T ss_pred CCEEEEEEEEEECCCCCCCCEEEEEEEC----------Ccee-----ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEE
Confidence 3444556677776543 5677777542 2222 66677 99999999999998865422 34555
Q ss_pred EEeee
Q 045314 980 LHGWN 984 (992)
Q Consensus 980 v~g~n 984 (992)
++.-|
T Consensus 83 iD~~n 87 (101)
T PF07705_consen 83 IDPDN 87 (101)
T ss_dssp ESTTT
T ss_pred EeeCC
Confidence 55443
No 52
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=44.81 E-value=55 Score=37.21 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=13.9
Q ss_pred eEeCCCCeEEEEEEEec
Q 045314 954 FSLAPGEVMPIKISFEV 970 (992)
Q Consensus 954 ~tl~Pge~~~~~~~~~~ 970 (992)
-.+.|||+|+|+|+...
T Consensus 338 ~pI~PGETr~v~v~aqd 354 (399)
T TIGR03079 338 SAIAPGETVEVKMEAKD 354 (399)
T ss_pred CCcCCCcceEEEEEEeh
Confidence 45899999999988653
No 53
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=44.33 E-value=57 Score=38.99 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEcc---------C-CCCCCC------hHHHHHHHHcCcEEEEecccccCCC----CCCCC
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCW---------G-GGLAER------PEFYHYCDIYGLLVWQEFWITGDVD----GRGVP 445 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~w---------g-Gg~~e~------~~fydlcDe~GIlVw~e~~~~~~~~----~~g~~ 445 (992)
.-.+|+.||++||++|+|+.|+. | -|.+.. +.+.+.|-+.||-.+.-+... ++. ..|-+
T Consensus 56 ~y~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~-~~P~~l~~~ggw 134 (455)
T PF00232_consen 56 HYHRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHF-DLPLWLEDYGGW 134 (455)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS---BHHHHHHTGG
T ss_pred chhhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeec-ccccceeecccc
Confidence 35899999999999999999964 1 122221 356788999999988755321 110 00111
Q ss_pred CCCCCCcccHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Q 045314 446 VSNPDGPLDHDLFMLCARDTVKLLRNHPSLALWVGGNEQ 484 (992)
Q Consensus 446 ~~~~~~p~~~~~~~~~~~~~v~rlrNHPSIi~W~~gNE~ 484 (992)
..+...+.|.+-++..++++... |-.|+--||.
T Consensus 135 ----~~~~~~~~F~~Ya~~~~~~~gd~--V~~w~T~NEp 167 (455)
T PF00232_consen 135 ----LNRETVDWFARYAEFVFERFGDR--VKYWITFNEP 167 (455)
T ss_dssp ----GSTHHHHHHHHHHHHHHHHHTTT--BSEEEEEETH
T ss_pred ----cCHHHHHHHHHHHHHHHHHhCCC--cceEEecccc
Confidence 11344577888899999999876 6789999996
No 54
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsB is 85.3kDa []. BcsB encodes the catalytic subunit of cellulose synthase. The protein polymerises uridine 5'-diphosphate glucose to cellulose: UDP-glucose + (1,4-beta-D-glucosyl)(N) = UDP + (1,4-beta-D-glucosyl)(N+1). The enzyme is specifically activated by the nucleotide cyclic diguanylic acid. Sequence analysis suggests that BcsB contains several transmembrane (TM) domains, and shares a high degree of similarity with Escherichia coli YhjN.; GO: 0006011 UDP-glucose metabolic process, 0016020 membrane
Probab=42.94 E-value=56 Score=40.54 Aligned_cols=63 Identities=19% Similarity=0.174 Sum_probs=44.5
Q ss_pred EEEccC-CC--CCeEEEEEC---Cc---ceeeEEEECCEEeEE----EeCC-eeeeEEeCCCCcCCCCCcEEEEEEEC
Q 045314 94 TFQCKL-SE--NQHLDLNFR---AI---NYSAEVYLNGQKRVL----QKGM-FRRHSLDVTDILHPDGQNLLAVLVHP 157 (992)
Q Consensus 94 ~F~vp~-~~--~~~v~L~Fe---Gv---d~~A~V~LNG~~vg~----~~g~-f~~~~~DIT~~Lk~gg~N~L~V~v~~ 157 (992)
.|.+|. +. +-++.|.|. .+ .+.=+|+|||+.|++ ..+. ....+++|...+.. |.|.|.|++..
T Consensus 34 ~f~v~~~~~v~~a~L~L~~~~S~~l~~~~S~L~V~lNg~~v~s~~l~~~~~~~~~~~i~Ip~~l~~-g~N~l~~~~~~ 110 (605)
T PF03170_consen 34 YFPVPADWVVTKATLNLSYTYSPSLLPERSQLTVSLNGQPVGSIPLDAESAQPQTVTIPIPPALIK-GFNRLTFEFIG 110 (605)
T ss_pred EEEcCCCccccceEEEEEEEECcccCCCcceEEEEECCEEeEEEecCcCCCCceEEEEecChhhcC-CceEEEEEEEe
Confidence 566665 43 334444443 11 235689999999986 3444 77899999988877 89999999975
No 55
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=41.62 E-value=2.7e+02 Score=30.44 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=59.7
Q ss_pred EEEEEeCCCccccceEEEEEEEEccC--CceeeEEeE----EEEeCCCCeE-EEEeeecCCCCCCCceEEEEEEE--EEc
Q 045314 725 FIEVVNTTSQELSDVAIEASVWDLDG--ACPYYKVTE----KLSVPPKKVV-SIAEMKYPKTKNPKPVYFLLLKL--YNM 795 (992)
Q Consensus 725 ~v~vvN~~~~~~~~~~l~v~~~d~~g--~~~~~~~~~----~~~i~~~~~~-~v~~~~~~~~~~~~~~~~l~l~L--~d~ 795 (992)
-|.+-|++...+.++.+.+.+-.... +..+..... ..+++++++. .+.+.++.+ .+.+.|...+ .+
T Consensus 19 ~l~~~N~s~~~v~~v~ikvemqT~s~~~r~~L~~~~~~~~~~~~L~p~~~l~~iv~~~lkE----~G~h~L~c~VsY~~- 93 (249)
T PF06159_consen 19 YLSVNNDSNKPVRNVRIKVEMQTPSQSLRLPLSDNENSDSPVASLAPGESLDFIVSHELKE----LGNHTLVCTVSYTD- 93 (249)
T ss_pred EEEeecCCCCceEEeEEEEEEeCCCCCccccCCCCccccccccccCCCCeEeEEEEEEeee----cCceEEEEEEEEec-
Confidence 45578888888988889999877766 433322111 1345666553 343433332 1233333333 22
Q ss_pred C---CCeEEeeeeeeccCCCCCccccccccccCcccceEEEEEEeCC--------EEEEEEEEEcCCCC
Q 045314 796 S---DYGIISRNFYWLHLPGGDYKLLEPYRKKNIPLKLTSQIFIKGS--------TYEVEMQVHNRSKK 853 (992)
Q Consensus 796 ~---~g~~~s~N~yw~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~~v~~~n~~~~ 853 (992)
. +|+. +.|=++-+ |..++ ++.|+.++....+ .+++++.++|.+..
T Consensus 94 ~~~~~g~~--~tfRK~yk----F~v~~-------PL~VktK~~~~~~~~~~~~~~~~~LEaqlqN~s~~ 149 (249)
T PF06159_consen 94 PTETSGER--RTFRKFYK----FQVLN-------PLSVKTKVYNLEDDSSLSPRERVFLEAQLQNISSG 149 (249)
T ss_pred CcccCCcc--ceEeeeeE----EeCCC-------CcEEEEEEEecCCccccccceeEEEEEEEEecCCC
Confidence 1 2321 11111110 22222 3567777766555 89999999999864
No 56
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=40.68 E-value=41 Score=41.49 Aligned_cols=48 Identities=13% Similarity=0.178 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEE-----------EccCCCCCC-----C----------hHHHHHHHHcCcEEEEecc
Q 045314 385 LSKKRYKTDIKFHADMNMNMI-----------RCWGGGLAE-----R----------PEFYHYCDIYGLLVWQEFW 434 (992)
Q Consensus 385 ~~~e~~~~~l~~~k~~g~N~i-----------R~wgGg~~e-----~----------~~fydlcDe~GIlVw~e~~ 434 (992)
-+.|...+.|-++|+||+|+| |-|| +.. + .+|-|.|-++||.|+-|.-
T Consensus 162 ~~~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWG--Yq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~V 235 (628)
T COG0296 162 GYFELAIELLPYLKELGITHIELMPVAEHPGDRSWG--YQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDWV 235 (628)
T ss_pred CHHHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCC--CCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 356788899999999999999 5673 311 1 3789999999999999863
No 57
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=40.15 E-value=1.4e+02 Score=32.19 Aligned_cols=86 Identities=15% Similarity=0.041 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCCCCCCC---h-----------HHHHHHHHcCcEEEEecccccCCCCCCCCCCCCCCc
Q 045314 387 KKRYKTDIKFHADMNMNMIRCWGGGLAER---P-----------EFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGP 452 (992)
Q Consensus 387 ~e~~~~~l~~~k~~g~N~iR~wgGg~~e~---~-----------~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~~~~~p 452 (992)
.+.+++.++.++++|+..||++.|..+.. + +.-++|.++||.+.-|.....++ +.+.
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~---------~~~~ 153 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDM---------PGFF 153 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccC---------CCCh
Confidence 36777899999999999999987654332 1 23466889999999885321000 0000
Q ss_pred ccHHHHHHHHHHHHHHhCCCcEE-EEEecCCCCC
Q 045314 453 LDHDLFMLCARDTVKLLRNHPSL-ALWVGGNEQV 485 (992)
Q Consensus 453 ~~~~~~~~~~~~~v~rlrNHPSI-i~W~~gNE~~ 485 (992)
. .-.+++.+++++.. ||.+ ++|..+|=..
T Consensus 154 l---~t~~~~~~li~~v~-~~~~~i~~D~~h~~~ 183 (254)
T TIGR03234 154 L---TTTEQALAVIDDVG-RENLKLQYDLYHMQR 183 (254)
T ss_pred h---cCHHHHHHHHHHhC-CCCEeEeeehhhhhh
Confidence 0 01234566666654 7777 7787776443
No 58
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=39.17 E-value=2.3e+02 Score=25.81 Aligned_cols=15 Identities=40% Similarity=0.829 Sum_probs=13.9
Q ss_pred EeCCCCeEEEEEEEe
Q 045314 955 SLAPGEVMPIKISFE 969 (992)
Q Consensus 955 tl~Pge~~~~~~~~~ 969 (992)
.|.||++.+|+|++.
T Consensus 58 ~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 58 FLAPGESVELEVTFS 72 (102)
T ss_pred EECCCCEEEEEEEEE
Confidence 499999999999998
No 59
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.04 E-value=2.5e+02 Score=25.06 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=20.3
Q ss_pred CCceeeceEEecc--------eeEeCCCCeEEEEEEEecCC
Q 045314 940 EDTRILPVHYSDN--------YFSLAPGEVMPIKISFEVPH 972 (992)
Q Consensus 940 ~~~~v~P~~~sDN--------y~tl~Pge~~~~~~~~~~~~ 972 (992)
+|+.| --||+. ..+|-|||+++.+++++..+
T Consensus 34 ~g~~v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 34 EGKEV--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKD 72 (82)
T ss_dssp T--EE--EETTTT-------EEEEE-TT-EEEEEEEESS--
T ss_pred CCCEE--EEecCCchhhheeeEEEECCCCEEEEEEEECCCC
Confidence 35566 578886 68999999999999887654
No 60
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=38.00 E-value=96 Score=36.26 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEccCCCC--CCC---hHHHHHHHHcCcEEEEecccccCCCCCCCCCCCCCCcccHHHHH
Q 045314 385 LSKKRYKTDIKFHADMNMNMIRCWGGGL--AER---PEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHDLFM 459 (992)
Q Consensus 385 ~~~e~~~~~l~~~k~~g~N~iR~wgGg~--~e~---~~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~~~~~p~~~~~~~ 459 (992)
.+.+.++.+|++++++|+-..=+=.|.. ... ...|++|++.|+-+.--| |+... ..++ .
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig~~d~~~~~~l~~a~~AA~~~gFKlf~Sf----D~~~~------~~~~------~ 77 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIGSSDSWQPDQLADAYQAAEAVGFKLFFSF----DMNSL------GPWS------Q 77 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccCCcccHHHHHHHHHHHHhcCCEEEEEe----cccCC------CCCC------H
Confidence 5789999999999999998755433211 111 357999999997665443 11100 0111 1
Q ss_pred HHHHHHHHHhCCCcEEEE
Q 045314 460 LCARDTVKLLRNHPSLAL 477 (992)
Q Consensus 460 ~~~~~~v~rlrNHPSIi~ 477 (992)
+++..+|+++.+||+...
T Consensus 78 ~~~~~~i~~y~~~pa~~~ 95 (386)
T PF03659_consen 78 DELIALIKKYAGHPAYFR 95 (386)
T ss_pred HHHHHHHHHHcCChhHEe
Confidence 668899999999999766
No 61
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=36.37 E-value=91 Score=35.65 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=15.5
Q ss_pred EEEeCCEEEEEEEEEcCCCCC
Q 045314 834 IFIKGSTYEVEMQVHNRSKKQ 854 (992)
Q Consensus 834 ~~~~~~~~~~~v~~~n~~~~~ 854 (992)
....+....++++++|.++.|
T Consensus 258 Y~vpgR~l~~~l~VtN~g~~p 278 (381)
T PF04744_consen 258 YRVPGRTLTMTLTVTNNGDSP 278 (381)
T ss_dssp EESSSSEEEEEEEEEEESSS-
T ss_pred EecCCcEEEEEEEEEcCCCCc
Confidence 345667788899999998754
No 62
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=34.75 E-value=42 Score=31.60 Aligned_cols=26 Identities=15% Similarity=0.442 Sum_probs=18.1
Q ss_pred eEEecceeEeCCCCeEEEEEEEecCC
Q 045314 947 VHYSDNYFSLAPGEVMPIKISFEVPH 972 (992)
Q Consensus 947 ~~~sDNy~tl~Pge~~~~~~~~~~~~ 972 (992)
+-.+..-|||.||++++|+|++..+.
T Consensus 57 ~~~~~~~vTV~ag~s~~v~vti~~p~ 82 (112)
T PF06280_consen 57 VSFSPDTVTVPAGQSKTVTVTITPPS 82 (112)
T ss_dssp EE---EEEEE-TTEEEEEEEEEE--G
T ss_pred EEeCCCeEEECCCCEEEEEEEEEehh
Confidence 66788899999999999999988644
No 63
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=34.74 E-value=95 Score=33.97 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=42.6
Q ss_pred eEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEccCCCCCC--------------ChHHHHHHHHcCcEEEEec
Q 045314 368 PIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGGLAE--------------RPEFYHYCDIYGLLVWQEF 433 (992)
Q Consensus 368 pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~wgGg~~e--------------~~~fydlcDe~GIlVw~e~ 433 (992)
+.++-|-|-+. ++|......+.+|++|.+++|- |.+-+ -+.+.+.|+++||.+..|.
T Consensus 16 ~~~iaGPC~vE-------s~e~~~~~a~~~~~~g~~~~r~--g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 16 NNFIVGPCSIE-------SYDHIRLAASSAKKLGYNYFRG--GAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred CcEEeccCccC-------CHHHHHHHHHHHHHcCCCEEEe--cccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 34444655543 6788888888899999999993 22211 1578999999999999997
Q ss_pred c
Q 045314 434 W 434 (992)
Q Consensus 434 ~ 434 (992)
+
T Consensus 87 ~ 87 (250)
T PRK13397 87 M 87 (250)
T ss_pred C
Confidence 5
No 64
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=34.45 E-value=1.2e+02 Score=28.81 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=23.3
Q ss_pred ceeeEEEECCEEeEEE-eCCeeeeEEeCCCCcCCCCCcEEEE
Q 045314 113 NYSAEVYLNGQKRVLQ-KGMFRRHSLDVTDILHPDGQNLLAV 153 (992)
Q Consensus 113 d~~A~V~LNG~~vg~~-~g~f~~~~~DIT~~Lk~gg~N~L~V 153 (992)
.-..+|||||+.||+. .|.| +.+||. + |+.+|..
T Consensus 40 ~~~~~v~vdg~~ig~l~~g~y--~~~~v~----p-G~h~i~~ 74 (117)
T PF11008_consen 40 AVKPDVYVDGELIGELKNGGY--FYVEVP----P-GKHTISA 74 (117)
T ss_pred cccceEEECCEEEEEeCCCeE--EEEEEC----C-CcEEEEE
Confidence 4567999999999974 5666 445554 3 5655554
No 65
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=34.25 E-value=65 Score=31.27 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=38.9
Q ss_pred EEEEEEccCCCCCeEEEEECCcceeeEEEECCEEeEEEeCCee-------eeEEeCCCCcCCCCCcEEEEEEECC
Q 045314 91 FFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFR-------RHSLDVTDILHPDGQNLLAVLVHPP 158 (992)
Q Consensus 91 Yrr~F~vp~~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~-------~~~~DIT~~Lk~gg~N~L~V~v~~~ 158 (992)
++-.|.+|. .....+.+. .+..+.+||||+.|..+.+... +....-+-.|..|+...|.|...+.
T Consensus 50 ~~G~~~~~~--~G~y~f~~~-~~d~~~l~idg~~vid~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~ 121 (145)
T PF07691_consen 50 WTGYFKPPE--TGTYTFSLT-SDDGARLWIDGKLVIDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNR 121 (145)
T ss_dssp EEEEEEESS--SEEEEEEEE-ESSEEEEEETTEEEEECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEEC
T ss_pred EEEEEeccc--CceEEEEEE-ecccEEEEECCEEEEcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEEC
Confidence 345677664 344556666 4447999999999998775332 2222222234456778888887764
No 66
>PRK11114 cellulose synthase regulator protein; Provisional
Probab=32.43 E-value=1e+02 Score=39.33 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=44.6
Q ss_pred EEEccC-C--CCCeEEEEECC------cceeeEEEECCEEeEEE------eCCeeeeEEeCCCCcCCCCCcEEEEEEECC
Q 045314 94 TFQCKL-S--ENQHLDLNFRA------INYSAEVYLNGQKRVLQ------KGMFRRHSLDVTDILHPDGQNLLAVLVHPP 158 (992)
Q Consensus 94 ~F~vp~-~--~~~~v~L~FeG------vd~~A~V~LNG~~vg~~------~g~f~~~~~DIT~~Lk~gg~N~L~V~v~~~ 158 (992)
.|.+|. + .+-++.|.+.- -.+.=+|+|||+.|++. .|.....+++|...+.. |.|.|.+++...
T Consensus 86 ~f~vp~d~~v~~A~L~L~y~~Sp~l~~~~S~L~V~lNg~~v~s~pL~~~~~~~~~~~~i~IP~~l~~-g~N~L~~~~~~~ 164 (756)
T PRK11114 86 EFGVRSDEVVTKARLNLEYTYSPALLPDLSHLKVYLNGELMGTLPLDKEQLGKKVLAQLPIDPRFIT-DFNRLRLEFIGH 164 (756)
T ss_pred EeecCccccccCcEEEEEEEECCCCCCCCCeEEEEECCEEeEEEecCcccCCCcceeEEecCHHHcC-CCceEEEEEecC
Confidence 667765 3 33444444332 23567899999999864 25567889999987776 799999998753
No 67
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=31.55 E-value=5.1e+02 Score=29.03 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=17.5
Q ss_pred EEEEEeCCCCeEEEEeeeeecCCCc
Q 045314 286 TQHLSISPGAHVQYTFPQLFFYKPN 310 (992)
Q Consensus 286 ~~~v~l~~~~~~~~~~~~l~i~~P~ 310 (992)
.-.++|++|++.++.+ .+.|+-||
T Consensus 294 ~W~~~l~~g~~~~l~~-~y~v~~Pk 317 (317)
T PF13598_consen 294 EWKVTLPPGESRTLEF-SYEVEYPK 317 (317)
T ss_pred EEEEEECCCCEEEEEE-EEEEEcCC
Confidence 4567888888877776 47777665
No 68
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=30.31 E-value=1.2e+02 Score=28.62 Aligned_cols=62 Identities=18% Similarity=0.286 Sum_probs=33.0
Q ss_pred EeecCCCce-eeEE-EEEEEecCCCCCCCCCCceeeceEEecc------eeEeCCCCeEEEEEEEecCCCCc-cEEEE
Q 045314 912 AELNGTDSG-VAFF-LHFSVRGWSKSHKEGEDTRILPVHYSDN------YFSLAPGEVMPIKISFEVPHGVT-PKVTL 980 (992)
Q Consensus 912 ~~~~~~~~~-~a~f-~~l~l~~~~~~~~~~~~~~v~P~~~sDN------y~tl~Pge~~~~~~~~~~~~~~~-~~~~v 980 (992)
+.+.|.+.. +-|. ..+.|.|. +|+..-|.+-..+ --+|-||++.+-.+-|..+.... ..|+.
T Consensus 42 v~v~N~~~~~~~~~~~~f~l~d~-------~g~~~~~~~~~~~~~~~~~~~~i~pG~~~~g~l~F~vp~~~~~~~l~~ 112 (123)
T PF11611_consen 42 VTVKNNGDEPLDFSPSDFKLYDS-------DGNKYDPDFSASSNDNDLFSETIKPGESVTGKLVFEVPKDDKPYTLEY 112 (123)
T ss_dssp EEEEE-SSS-EEEEGGGEEEE-T-------T--B--EEE-CCCTTTB--EEEE-TT-EEEEEEEEEESTT-GG-EEEE
T ss_pred EEEEECCCCcEEecccceEEEeC-------CCCEEcccccchhccccccccEECCCCEEEEEEEEEECCCCccEEEEE
Confidence 555554443 3332 26777764 3455555554443 36999999999999999887554 66766
No 69
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=30.02 E-value=1.5e+02 Score=32.58 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhCCCcEEEccCCCCCC--Ch-----------HHHHHHHHcCcEEEEecccccCCCCCCCCCCCCCCc
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCWGGGLAE--RP-----------EFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGP 452 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~wgGg~~e--~~-----------~fydlcDe~GIlVw~e~~~~~~~~~~g~~~~~~~~p 452 (992)
.-+.+++.+++++++|+.+|++|.|.... .+ .+.++|.++||.+--|...... + ...
T Consensus 83 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~---------~-~~~ 152 (279)
T cd00019 83 SIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQG---------N-EIG 152 (279)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC---------C-CCC
Confidence 45778899999999999999999865431 12 2345556899999998643210 0 000
Q ss_pred ccHHHHHHHHHHHHHHhCCCcEE-EEEecCC
Q 045314 453 LDHDLFMLCARDTVKLLRNHPSL-ALWVGGN 482 (992)
Q Consensus 453 ~~~~~~~~~~~~~v~rlrNHPSI-i~W~~gN 482 (992)
. -.+++.++++.+..||.+ +.+-.+|
T Consensus 153 ~----t~~~~~~li~~v~~~~~~g~~lD~~h 179 (279)
T cd00019 153 S----SFEELKEIIDLIKEKPRVGVCIDTCH 179 (279)
T ss_pred C----CHHHHHHHHHhcCCCCCeEEEEEhhh
Confidence 1 123456667776668887 7777776
No 70
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=29.76 E-value=3.3e+02 Score=27.00 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=21.2
Q ss_pred eCCCCeEEEEEEEecCC-CCccEEEEEe
Q 045314 956 LAPGEVMPIKISFEVPH-GVTPKVTLHG 982 (992)
Q Consensus 956 l~Pge~~~~~~~~~~~~-~~~~~~~v~g 982 (992)
|.|||+++.++.++... ...+.++++.
T Consensus 119 L~~~e~~~f~~~~~~~p~~~~~~~~~~~ 146 (149)
T PF09624_consen 119 LKPGESKEFRFIFPYPPYFGNYNIRVKS 146 (149)
T ss_pred cCcccceeEEEEecCCccCCCceEEEEE
Confidence 99999999999888654 4566777665
No 71
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=29.22 E-value=52 Score=28.30 Aligned_cols=17 Identities=35% Similarity=0.581 Sum_probs=12.5
Q ss_pred eEeCCCCeEEEEEEEec
Q 045314 954 FSLAPGEVMPIKISFEV 970 (992)
Q Consensus 954 ~tl~Pge~~~~~~~~~~ 970 (992)
|.|.|||+++|+++.+.
T Consensus 27 v~l~pGes~~v~~~l~~ 43 (71)
T PF14310_consen 27 VSLAPGESKTVSFTLPP 43 (71)
T ss_dssp EEE-TT-EEEEEEEEEH
T ss_pred EEECCCCEEEEEEEECH
Confidence 46899999999998764
No 72
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=29.06 E-value=4.9e+02 Score=24.49 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=40.7
Q ss_pred ceEEEEEeCCCccccceEEEEEEEEccCCceeeEEeEEEEeCCCCeEEEE-eeecCCCCCCCceEEEEEEEEEcCCCeEE
Q 045314 723 SYFIEVVNTTSQELSDVAIEASVWDLDGACPYYKVTEKLSVPPKKVVSIA-EMKYPKTKNPKPVYFLLLKLYNMSDYGII 801 (992)
Q Consensus 723 ~~~v~vvN~~~~~~~~~~l~v~~~d~~g~~~~~~~~~~~~i~~~~~~~v~-~~~~~~~~~~~~~~~l~l~L~d~~~g~~~ 801 (992)
.+.+.+.|-+.++. ++++++-.+.|-.+.. ....+.++++.+..+. .+..|.........=+.+++.+.+.+..+
T Consensus 34 ~Y~lkl~Nkt~~~~---~~~i~~~g~~~~~l~~-~~~~i~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~~~~~~~~ 109 (118)
T PF11614_consen 34 QYTLKLTNKTNQPR---TYTISVEGLPGAELQG-PENTITVPPGETREVPVFVTAPPDALKSGSTPITFTVTDDDGGEII 109 (118)
T ss_dssp EEEEEEEE-SSS-E---EEEEEEES-SS-EE-E-S--EEEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEEGGGTEEE
T ss_pred EEEEEEEECCCCCE---EEEEEEecCCCeEEEC-CCcceEECCCCEEEEEEEEEECHHHccCCCeeEEEEEEECCCCEEE
Confidence 46788999998864 6777776777655422 3357889999886642 33333322111222345555543445655
Q ss_pred eeeeeec
Q 045314 802 SRNFYWL 808 (992)
Q Consensus 802 s~N~yw~ 808 (992)
+...-++
T Consensus 110 ~~~s~F~ 116 (118)
T PF11614_consen 110 TYKSTFI 116 (118)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5554443
No 73
>smart00642 Aamy Alpha-amylase domain.
Probab=28.98 E-value=1.8e+02 Score=29.55 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=42.4
Q ss_pred EEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEcc-----------CCCCCCC---------------hHHHHHH
Q 045314 369 IFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCW-----------GGGLAER---------------PEFYHYC 422 (992)
Q Consensus 369 i~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~w-----------gGg~~e~---------------~~fydlc 422 (992)
|+++...|...+. .-+-+.+...|.+++++|+|+|-+- ..|+... .++-+.|
T Consensus 2 i~~~~F~~~~~~~--~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~ 79 (166)
T smart00642 2 IYPDRFADGNGDG--GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAA 79 (166)
T ss_pred eeeccccCCCCCC--CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHH
Confidence 4455555533332 2345677788889999999999431 1122111 2566778
Q ss_pred HHcCcEEEEecccc
Q 045314 423 DIYGLLVWQEFWIT 436 (992)
Q Consensus 423 De~GIlVw~e~~~~ 436 (992)
-+.||-|+-|+.+.
T Consensus 80 h~~Gi~vilD~V~N 93 (166)
T smart00642 80 HARGIKVILDVVIN 93 (166)
T ss_pred HHCCCEEEEEECCC
Confidence 88999999998764
No 74
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=28.89 E-value=4.1e+02 Score=24.53 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=18.3
Q ss_pred eEEecceeEeCCCCeEEEEEEEecCC
Q 045314 947 VHYSDNYFSLAPGEVMPIKISFEVPH 972 (992)
Q Consensus 947 ~~~sDNy~tl~Pge~~~~~~~~~~~~ 972 (992)
..=....++|.|||+.++++.+...+
T Consensus 53 ~~~~~~~~~l~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 53 FKKEKFEVTLKPGETKSVEVTITPSQ 78 (107)
T ss_dssp EEEEEEEEEE-TTEEEEEEEEE-HHS
T ss_pred EeEEEcceeeCCCCEEEEEEEEEcee
Confidence 34455678999999999998876544
No 75
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=28.19 E-value=1.3e+02 Score=28.82 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=35.6
Q ss_pred CHHHHHHHHHHHHhCCCcEEEccCCCCC--CChHHHHHHHHcCcEEEE
Q 045314 386 SKKRYKTDIKFHADMNMNMIRCWGGGLA--ERPEFYHYCDIYGLLVWQ 431 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~iR~wgGg~~--e~~~fydlcDe~GIlVw~ 431 (992)
+++.+.+.++.+.+.|+-.+=+-.|.+. =+++..++|||+|+-+..
T Consensus 57 ~~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ 104 (123)
T PF07905_consen 57 DEEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIE 104 (123)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEE
Confidence 4567899999999999888766443222 257899999999999874
No 76
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=28.05 E-value=2.1e+02 Score=31.20 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEccCCCCCCC--h--------HHHHHHH-HcCcEEEEecccccCCCCCCCCCCCCCCcc
Q 045314 385 LSKKRYKTDIKFHADMNMNMIRCWGGGLAER--P--------EFYHYCD-IYGLLVWQEFWITGDVDGRGVPVSNPDGPL 453 (992)
Q Consensus 385 ~~~e~~~~~l~~~k~~g~N~iR~wgGg~~e~--~--------~fydlcD-e~GIlVw~e~~~~~~~~~~g~~~~~~~~p~ 453 (992)
.+.+.+++.++.++++|...|.+|.|...+. + .+-++|+ +.|+.+.-|.+.... . +.
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~-----~-------~~ 148 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKG-----S-------QI 148 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCC-----C-------cc
Confidence 4456788899999999999999998754322 1 3345666 478988888542100 0 00
Q ss_pred cHHHHHHHHHHHHHHhCCCcEE-EEEecCCCC
Q 045314 454 DHDLFMLCARDTVKLLRNHPSL-ALWVGGNEQ 484 (992)
Q Consensus 454 ~~~~~~~~~~~~v~rlrNHPSI-i~W~~gNE~ 484 (992)
.. -.+++.++++.+...|.+ ++|-.+|=.
T Consensus 149 ~~--~~~~~~~ll~~v~~~~~~g~~lD~gH~~ 178 (273)
T smart00518 149 GS--TFEDLKEIIDLIKELDRIGVCIDTCHIF 178 (273)
T ss_pred CC--CHHHHHHHHHhcCCCCCeEEEEEccchh
Confidence 00 124466667766654654 666666643
No 77
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=27.35 E-value=77 Score=33.80 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCcEEEccCCCC--CCChHHHHHHHHcCcEEE
Q 045314 392 TDIKFHADMNMNMIRCWGGGL--AERPEFYHYCDIYGLLVW 430 (992)
Q Consensus 392 ~~l~~~k~~g~N~iR~wgGg~--~e~~~fydlcDe~GIlVw 430 (992)
+-++.|+++|+..|=+..|+. .+.+++.++||++||.||
T Consensus 173 ~Tv~~~~~ag~~~laveAg~tl~ld~~~~i~~Ad~~gi~i~ 213 (214)
T PF06230_consen 173 DTVENAAEAGLAGLAVEAGKTLILDREEVIALADKAGIFIV 213 (214)
T ss_pred HHHHHHHHcCCeEEEEecCcEEEecHHHHHHHHHHcCCEEe
Confidence 357789999999999887663 467899999999999987
No 78
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=27.05 E-value=82 Score=39.49 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=59.7
Q ss_pred eeeEEEEEEEEeeecCCCceEEEECCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEccCCCCCCChHHHH
Q 045314 341 SHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYH 420 (992)
Q Consensus 341 ~~~fG~R~v~~~~d~~~~g~~f~vNG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~wgGg~~e~~~fyd 420 (992)
....|++||.+.-.++..+ ..+.---.-|+-|.+..|-++++. ++..++.+|..|.++|-.==|=..|.++|-+
T Consensus 26 a~ELgi~TVAIys~ED~~S-~HR~KADEsY~iG~~~~Pi~aYL~-----IdeII~iAk~~gaDaIhPGYGfLSEn~efA~ 99 (1149)
T COG1038 26 ANELGIKTVAIYSEEDRLS-LHRFKADESYLIGEGKGPVEAYLS-----IDEIIRIAKRSGADAIHPGYGFLSENPEFAR 99 (1149)
T ss_pred HHhcCceEEEEeeccccch-hhhccccceeeecCCCCchHHhcc-----HHHHHHHHHHcCCCeecCCcccccCCHHHHH
Confidence 3568999998764443332 222223344555666777776654 4678999999999999763333578999999
Q ss_pred HHHHcCcEEEE
Q 045314 421 YCDIYGLLVWQ 431 (992)
Q Consensus 421 lcDe~GIlVw~ 431 (992)
.|-+.||--+-
T Consensus 100 ~c~eaGI~FIG 110 (1149)
T COG1038 100 ACAEAGITFIG 110 (1149)
T ss_pred HHHHcCCEEeC
Confidence 99999998763
No 79
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=26.72 E-value=1.9e+02 Score=27.44 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=37.3
Q ss_pred CcceEEeecCCCceeeEEEEEEEecCCCCCCCCCCceeeceEEecceeEeCCCCeEEEEEEEec
Q 045314 907 DSLKVAELNGTDSGVAFFLHFSVRGWSKSHKEGEDTRILPVHYSDNYFSLAPGEVMPIKISFEV 970 (992)
Q Consensus 907 ~~~~~~~~~~~~~~~a~f~~l~l~~~~~~~~~~~~~~v~P~~~sDNy~tl~Pge~~~~~~~~~~ 970 (992)
+....+.+.|.+..+.+ +.+.+.+.+. +...+..-+...+=.-+.|-||++++|.| +..
T Consensus 15 ~~~~~i~v~N~~~~~~~-vq~~v~~~~~---~~~~~~~~~~~vsPp~~~L~pg~~q~vRv-~~~ 73 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYL-VQVWVYDQDD---EDEDEPTDPFIVSPPIFRLEPGESQTVRV-YRG 73 (122)
T ss_dssp SSEEEEEEEESSSSEEE-EEEEEEETTS---TTSSSSSSSEEEESSEEEEETTEEEEEEE-EEC
T ss_pred CCEEEEEEEcCCCCcEE-EEEEEEcCCC---cccccccccEEEeCCceEeCCCCcEEEEE-Eec
Confidence 34555666666664444 4666666211 00122233678888999999999999999 663
No 80
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=26.59 E-value=3.7e+02 Score=26.53 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCEEEEEEEEEcCCCCCCcccccccccccccCCCCCCCcCCCCCCCcchhhhhhhhhhhhhhcccccCCCcceEEeecCC
Q 045314 838 GSTYEVEMQVHNRSKKQDPKRLTYKNNFTTVPVDGDFNMASTEPVNSATEEKQEAGLFRRICRHFKKDTDSLKVAELNGT 917 (992)
Q Consensus 838 ~~~~~~~v~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (992)
.+.+.++.++.|.++.+
T Consensus 67 ~~~l~v~g~i~N~~~~~--------------------------------------------------------------- 83 (149)
T PF11906_consen 67 PGVLVVSGTIRNRADFP--------------------------------------------------------------- 83 (149)
T ss_pred CCEEEEEEEEEeCCCCc---------------------------------------------------------------
Q ss_pred CceeeEEEEEEEecCCCCCCCCCCceee-ceEEecceeE--------eCCCCeEEEEEEEecCCCCccEEEEE
Q 045314 918 DSGVAFFLHFSVRGWSKSHKEGEDTRIL-PVHYSDNYFS--------LAPGEVMPIKISFEVPHGVTPKVTLH 981 (992)
Q Consensus 918 ~~~~a~f~~l~l~~~~~~~~~~~~~~v~-P~~~sDNy~t--------l~Pge~~~~~~~~~~~~~~~~~~~v~ 981 (992)
..---++|+|.|. +|+.|. =++--+.|+. |.||++.++++.+..+.......+|+
T Consensus 84 --~~~P~l~l~L~D~-------~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~~~~~~~~~~p~~~a~~~~v~ 147 (149)
T PF11906_consen 84 --QALPALELSLLDA-------QGQPLARRVFTPADYLPPGLAAQAGLPPGESVPFRLRLEDPPPRAAGYRVE 147 (149)
T ss_pred --ccCceEEEEEECC-------CCCEEEEEEEChHHhcccccccccccCCCCeEEEEEEeeCCCCccceEEEE
No 81
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=26.02 E-value=1.2e+02 Score=38.87 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=15.1
Q ss_pred eEeCCCCeEEEEEEEecC
Q 045314 954 FSLAPGEVMPIKISFEVP 971 (992)
Q Consensus 954 ~tl~Pge~~~~~~~~~~~ 971 (992)
|+|-|||+++|+++++..
T Consensus 711 v~L~pGes~~V~~~l~~~ 728 (765)
T PRK15098 711 IMLKPGETQTVSFPIDIE 728 (765)
T ss_pred EeECCCCeEEEEEeecHH
Confidence 579999999999987643
No 82
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=26.00 E-value=1.6e+02 Score=35.22 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=59.0
Q ss_pred eeeEEEEEEEEeeecCCCceEEEECCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEccCCCCCCChHHHH
Q 045314 341 SHLFGFRKIESHIDNATGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYH 420 (992)
Q Consensus 341 ~~~fG~R~v~~~~d~~~~g~~f~vNG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~wgGg~~e~~~fyd 420 (992)
..+.|||+|.+.-|.+.++-....-.+.+-+.++ .. +-+.=++.+.|+.+|.-|..+|-.==|=..|..+|-+
T Consensus 17 akkmGI~tVAV~Sd~D~~SlHVk~ADeav~ig~a-----~~--~~SYL~~~~I~~aa~~tgaqaihPGYGFLSEn~~Fae 89 (670)
T KOG0238|consen 17 AKKMGIRTVAVYSDADRNSLHVKMADEAVCIGPA-----PA--AQSYLRMDKIIDAAKRTGAQAIHPGYGFLSENAEFAE 89 (670)
T ss_pred HHHhCCeEEEEEccCccccceeecccceeecCCC-----ch--hhhhhhHHHHHHHHHhcCCceecCCccccccchHHHH
Confidence 3579999999987776665445555554443322 11 2233456789999999999999763333578899999
Q ss_pred HHHHcCcEEEE
Q 045314 421 YCDIYGLLVWQ 431 (992)
Q Consensus 421 lcDe~GIlVw~ 431 (992)
+|-..||.-+-
T Consensus 90 ~c~~~Gi~FiG 100 (670)
T KOG0238|consen 90 LCEDAGITFIG 100 (670)
T ss_pred HHHHcCCeEEC
Confidence 99999998763
No 83
>PLN02361 alpha-amylase
Probab=24.96 E-value=1.9e+02 Score=34.02 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=48.9
Q ss_pred EECCEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEcc------CC-CCCCC---------------hHHHH
Q 045314 363 KVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCW------GG-GLAER---------------PEFYH 420 (992)
Q Consensus 363 ~vNG~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~w------gG-g~~e~---------------~~fyd 420 (992)
.-+|..|.+.|.+|...+. ---..+...+.+++++|+++|=+- ++ |+.+. ..+.+
T Consensus 7 ~~~~~~v~lQ~F~W~~~~~---~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~ 83 (401)
T PLN02361 7 IRNGREILLQAFNWESHKH---DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLR 83 (401)
T ss_pred hcCCCcEEEEEEeccCCcc---HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHH
Confidence 4568899999999953221 112567788899999999999431 00 12111 25568
Q ss_pred HHHHcCcEEEEecccc
Q 045314 421 YCDIYGLLVWQEFWIT 436 (992)
Q Consensus 421 lcDe~GIlVw~e~~~~ 436 (992)
.|.+.||-|+.|+.+.
T Consensus 84 ~~h~~gi~vi~D~V~N 99 (401)
T PLN02361 84 KMKQYNVRAMADIVIN 99 (401)
T ss_pred HHHHcCCEEEEEEccc
Confidence 8889999999998764
No 84
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=24.72 E-value=6.6e+02 Score=24.47 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=52.2
Q ss_pred eeeccccceEEEeecC-ceEEEEEeCCCccccceEEEEEEEEccCCceeeEEeEEEEeCC-----CCeEEE-EeeecCCC
Q 045314 707 GCRCAAEPIHVQLNLA-SYFIEVVNTTSQELSDVAIEASVWDLDGACPYYKVTEKLSVPP-----KKVVSI-AEMKYPKT 779 (992)
Q Consensus 707 ~~k~a~~pv~v~~~~~-~~~v~vvN~~~~~~~~~~l~v~~~d~~g~~~~~~~~~~~~i~~-----~~~~~v-~~~~~~~~ 779 (992)
+++|-.+|-...+|+. ...+.++. .+ ++++++.+..-+|+.++......+..+. ++..-- .++.+|.+
T Consensus 17 g~qkt~~p~~~~lNP~~~i~~~l~s-GL----DRkvrvsv~~~~~~~v~st~Ts~v~~~d~~~s~~G~efYGk~ltlp~l 91 (124)
T PF13752_consen 17 GTQKTVSPATGYLNPNGNITFYLIS-GL----DRKVRVSVTRSSGKVVYSTTTSKVLVADRRISSNGKEFYGKELTLPAL 91 (124)
T ss_pred CcEEEcCCCcceeCCCCCEEEEEEc-cc----cceEEEEEEeCCCcEEEEeecceEEeeeeeEEeCCceeeeeEEEeccC
Confidence 4555566666555654 34455543 22 2367777777777744444333333222 221111 22344443
Q ss_pred CCCCceEEEEEEEEEcCCCeEEeeeeeecc
Q 045314 780 KNPKPVYFLLLKLYNMSDYGIISRNFYWLH 809 (992)
Q Consensus 780 ~~~~~~~~l~l~L~d~~~g~~~s~N~yw~~ 809 (992)
. ...|-|+.++.+ ..|++|+...|=+.
T Consensus 92 ~--dG~ytvk~eiL~-s~g~vV~t~s~~~~ 118 (124)
T PF13752_consen 92 G--DGTYTVKSEILD-SQGTVVQTYSYPFT 118 (124)
T ss_pred C--CCcEEEEEEeec-cCCCEEEeeeEeEE
Confidence 2 355788999988 68999998877553
No 85
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=24.55 E-value=1.3e+02 Score=26.64 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=37.1
Q ss_pred EccCCCCCeEEEEECCcceeeEEEECCEEeEEEeCCeeeeEEeCCCCcCCCCCcE-EEEEEECC
Q 045314 96 QCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTDILHPDGQNL-LAVLVHPP 158 (992)
Q Consensus 96 ~vp~~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~~~~~DIT~~Lk~gg~N~-L~V~v~~~ 158 (992)
.+|. .-..+.|...--+..|.|.+||..+... -....+++ .. |+|. |.|.|.+.
T Consensus 19 ~V~~-~~~~v~v~a~~~~~~a~v~vng~~~~~~---~~~~~i~L----~~-G~n~~i~i~Vta~ 73 (88)
T PF12733_consen 19 TVPN-DVDSVTVTATPEDSGATVTVNGVPVNSG---GYSATIPL----NE-GENTVITITVTAE 73 (88)
T ss_pred EECC-CceEEEEEEEECCCCEEEEEcCEEccCC---CcceeeEc----cC-CCceEEEEEEEcC
Confidence 4454 2356778777778899999999887543 11234444 34 8898 99999764
No 86
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=24.13 E-value=1.4e+02 Score=26.03 Aligned_cols=61 Identities=20% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCcceEEeecCCCceeeEEEEEEEecCCCCCCCCCCce--eeceEEecceeEeCCCCeEEEEEEEecCCCCcc
Q 045314 905 DTDSLKVAELNGTDSGVAFFLHFSVRGWSKSHKEGEDTR--ILPVHYSDNYFSLAPGEVMPIKISFEVPHGVTP 976 (992)
Q Consensus 905 ~~~~~~~~~~~~~~~~~a~f~~l~l~~~~~~~~~~~~~~--v~P~~~sDNy~tl~Pge~~~~~~~~~~~~~~~~ 976 (992)
|....+.+.+.|.+...+.=++|+|.-. +|=. .-|..-. +|-|||+.++++++..+....+
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P-------~GW~~~~~~~~~~----~l~pG~s~~~~~~V~vp~~a~~ 66 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLP-------EGWTVSASPASVP----SLPPGESVTVTFTVTVPADAAP 66 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE------B-TTSEEEEEEEEEE-TT--S
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCC-------CCccccCCccccc----cCCCCCEEEEEEEEECCCCCCC
No 87
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.84 E-value=3.6e+02 Score=29.45 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCCCCC-CC-------------hHHHHHHHHcCcEEEEecc
Q 045314 387 KKRYKTDIKFHADMNMNMIRCWGGGLA-ER-------------PEFYHYCDIYGLLVWQEFW 434 (992)
Q Consensus 387 ~e~~~~~l~~~k~~g~N~iR~wgGg~~-e~-------------~~fydlcDe~GIlVw~e~~ 434 (992)
.+.+++.++.++++|++.||++|+..+ ++ .++-++|.++||-+--|.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec
Confidence 466789999999999999999754321 11 2355677889998888864
No 88
>PF00703 Glyco_hydro_2: Glycosyl hydrolases family 2; InterPro: IPR006102 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities: beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This entry describes the immunoglobulin-like beta-sandwich domain [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3FN9_C 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3GM8_A 3HN3_E 1BHG_A 2VZU_A 2X09_A ....
Probab=23.27 E-value=5.4e+02 Score=23.00 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=41.2
Q ss_pred EEeCCCccccceEEEEEEEEccCCceeeEEeEEEEeCCCCeEEE-Eeeec--CCC--CCCCceEEEEEEEEEcCCCeEEe
Q 045314 728 VVNTTSQELSDVAIEASVWDLDGACPYYKVTEKLSVPPKKVVSI-AEMKY--PKT--KNPKPVYFLLLKLYNMSDYGIIS 802 (992)
Q Consensus 728 vvN~~~~~~~~~~l~v~~~d~~g~~~~~~~~~~~~i~~~~~~~v-~~~~~--~~~--~~~~~~~~l~l~L~d~~~g~~~s 802 (992)
+.|...... .++|.+++.+..++..... ........+....+ ..+.+ |.+ .+....|-|+++|.+ +|+++.
T Consensus 26 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~lW~p~~P~LY~l~v~l~~--~g~~~d 101 (110)
T PF00703_consen 26 VRNESNKPL-DVTVRVRLFDPEGKKVVTQ-SPVVSLSAPGQARITLTIEIPNPKLWSPEDPYLYTLEVELDD--DGEVLD 101 (110)
T ss_dssp EEEESSSSC-EEEEEEEEEETTSEEEEEE-EEEEEECCCCEEEEEEEEEEESS-BBESSSBSEEEEEEEEEE--TTEEEE
T ss_pred EEeCCCCcE-EEEEEEEEECCCCCEEEEe-eeEEEecCCceeEEEEEEEcCCCCCcCCCCceEEEEEEEEEe--CCEEEE
Confidence 356665554 5788999999988765443 23344544443332 23333 222 133457778899854 677664
Q ss_pred e
Q 045314 803 R 803 (992)
Q Consensus 803 ~ 803 (992)
.
T Consensus 102 ~ 102 (110)
T PF00703_consen 102 S 102 (110)
T ss_dssp E
T ss_pred E
Confidence 3
No 89
>cd00928 Cyt_c_Oxidase_VIIa Cytochrome c oxidase subunit VIIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIIa has two tissue-specific isoforms that are expressed in a developmental manner. VIIa-H is expressed in heart and skeletal muscle but not smooth muscle. VIIa-L is expressed in liver and non-muscle tissues.
Probab=22.89 E-value=40 Score=27.83 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=10.8
Q ss_pred EECCEeEEEeeee
Q 045314 363 KVNGQPIFIRGGN 375 (992)
Q Consensus 363 ~vNG~pi~lrG~n 375 (992)
.-||.||++||+-
T Consensus 14 ~~ng~PV~LKGG~ 26 (55)
T cd00928 14 ADDGLPVHLKGGV 26 (55)
T ss_pred CCCCceEEecCCc
Confidence 3589999999974
No 90
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=22.88 E-value=69 Score=27.20 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=11.2
Q ss_pred EEECCEEeEEEeC
Q 045314 118 VYLNGQKRVLQKG 130 (992)
Q Consensus 118 V~LNG~~vg~~~g 130 (992)
|||||..+|.|+.
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999998875
No 91
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=22.88 E-value=98 Score=25.48 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEccCCC
Q 045314 384 RLSKKRYKTDIKFHADMNMNMIRCWGGG 411 (992)
Q Consensus 384 ~~~~e~~~~~l~~~k~~g~N~iR~wgGg 411 (992)
.++...+++||..+.+.|+ ..|++||-
T Consensus 25 ~VS~~TiRRDl~~L~~~g~-i~r~~GG~ 51 (57)
T PF08220_consen 25 GVSEMTIRRDLNKLEKQGL-IKRTHGGA 51 (57)
T ss_pred CcCHHHHHHHHHHHHHCCC-EEEEcCEE
Confidence 6899999999999999999 88998763
No 92
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=22.86 E-value=2.4e+02 Score=25.86 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=30.0
Q ss_pred EeecCCCceeeEEEEEEEecCCCCCCCCCCceeeceEEecceeEeCCCCeEEEEEEEecCC
Q 045314 912 AELNGTDSGVAFFLHFSVRGWSKSHKEGEDTRILPVHYSDNYFSLAPGEVMPIKISFEVPH 972 (992)
Q Consensus 912 ~~~~~~~~~~a~f~~l~l~~~~~~~~~~~~~~v~P~~~sDNy~tl~Pge~~~~~~~~~~~~ 972 (992)
.+.|++...+||.++-+-. .. ..-.-++--|-|||+.+|+|.+....
T Consensus 25 ~l~N~s~~~i~fKiktt~~---------~~-----y~v~P~~G~i~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 25 TLTNPSDKPIAFKIKTTNP---------NR-----YRVKPSYGIIEPGESVEITITFQPFD 71 (109)
T ss_dssp EEEE-SSSEEEEEEEES-T---------TT-----EEEESSEEEE-TTEEEEEEEEE-SSS
T ss_pred EEECCCCCcEEEEEEcCCC---------ce-----EEecCCCEEECCCCEEEEEEEEEecc
Confidence 4445566679998876422 12 23356788999999999999988633
No 93
>PF07550 DUF1533: Protein of unknown function (DUF1533); InterPro: IPR011432 This domain is found duplicated in proteins of unknown function. The proteins typically also contain leucine-rich repeats.
Probab=22.47 E-value=1.5e+02 Score=25.18 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=23.3
Q ss_pred eeEEEECCEEeEEEeCCeeeeE------EeCCC-CcCCCCCcEEEEEEE
Q 045314 115 SAEVYLNGQKRVLQKGMFRRHS------LDVTD-ILHPDGQNLLAVLVH 156 (992)
Q Consensus 115 ~A~V~LNG~~vg~~~g~f~~~~------~DIT~-~Lk~gg~N~L~V~v~ 156 (992)
...|.|||+........-..+. ++|.. .++..|+|.|.|...
T Consensus 8 I~~V~VNg~~y~~~~~~~~~y~~~~~~~l~i~~~~f~~~G~~~I~I~A~ 56 (65)
T PF07550_consen 8 ITSVTVNGKEYNKSLKGNDKYSISSKGSLKIKASAFNKDGENTIVIKAT 56 (65)
T ss_pred CCEEEECCEEeeccccccccEEeccCCcEEEcHHHcCcCCceEEEEEeC
Confidence 4579999999821111111122 33332 443447899988764
No 94
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=22.34 E-value=2.1e+02 Score=33.18 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=43.4
Q ss_pred CEeEEEeeeeecCCCCcCCCCHHHHHHHHHHHHhCCCcEEEccCCCCCCC--------------hHHHHHHHHcCcEEEE
Q 045314 366 GQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGGLAER--------------PEFYHYCDIYGLLVWQ 431 (992)
Q Consensus 366 G~pi~lrG~n~~p~d~~~~~~~e~~~~~l~~~k~~g~N~iR~wgGg~~e~--------------~~fydlcDe~GIlVw~ 431 (992)
|+++++-|-|-+ -+.+.+....+.+|+.|+.++|- |-+.+. ..+.+.|.+.||.+..
T Consensus 117 ~~~~~iaGpc~i-------E~~~~~~~~A~~lk~~g~~~~r~--~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t 187 (360)
T PRK12595 117 GNQSFIFGPCSV-------ESYEQVEAVAKALKAKGLKLLRG--GAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVIS 187 (360)
T ss_pred CCeeeEEecccc-------cCHHHHHHHHHHHHHcCCcEEEc--cccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEE
Confidence 456666565543 25778888888999999999992 222111 3788999999999999
Q ss_pred ecc
Q 045314 432 EFW 434 (992)
Q Consensus 432 e~~ 434 (992)
+.+
T Consensus 188 ~v~ 190 (360)
T PRK12595 188 EIV 190 (360)
T ss_pred eeC
Confidence 865
No 95
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=22.33 E-value=2.4e+02 Score=27.14 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=37.3
Q ss_pred EEEEEEEEccCCCCCeEEEEECCcceeeEEEECCEEeEEEeCCee-eeEEeCCCCcCCCCCcEEEEEEEC
Q 045314 89 FWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFR-RHSLDVTDILHPDGQNLLAVLVHP 157 (992)
Q Consensus 89 ~WYrr~F~vp~~~~~~v~L~FeGvd~~A~V~LNG~~vg~~~g~f~-~~~~DIT~~Lk~gg~N~L~V~v~~ 157 (992)
.-+.-.|.+|. .| ...+.+.+ +..+.+||||+.|..+.+... +.+.-.+-.|..|+...|.|....
T Consensus 46 ~~~~g~i~~~~-~G-~y~f~~~~-~~~~~l~Idg~~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 46 VRWTGYLKPPE-DG-EYTFSITS-DDGARLWIDGKLVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEEEEEEECCC-Cc-cEEEEEEc-CCcEEEEECCcEEEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 34456677665 33 34556654 557999999999987643322 001111112344557777777754
No 96
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=21.83 E-value=1.9e+02 Score=24.21 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCcEEEccC-CCCCCChHHHHHHHHcCcEEEEec
Q 045314 390 YKTDIKFHADMNMNMIRCWG-GGLAERPEFYHYCDIYGLLVWQEF 433 (992)
Q Consensus 390 ~~~~l~~~k~~g~N~iR~wg-Gg~~e~~~fydlcDe~GIlVw~e~ 433 (992)
.+..++.+++.|+..+=+.- +......+|+++|.+.||-|+.-+
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 46788999999999986431 112334689999999999988643
No 97
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=21.41 E-value=2.1e+02 Score=32.32 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHhCCCcEE----EccCCCCCCC----------------------hHHHHHHHHcCcEEEE
Q 045314 386 SKKRYKTDIKFHADMNMNMI----RCWGGGLAER----------------------PEFYHYCDIYGLLVWQ 431 (992)
Q Consensus 386 ~~e~~~~~l~~~k~~g~N~i----R~wgGg~~e~----------------------~~fydlcDe~GIlVw~ 431 (992)
+++.+++.|+.++++|||+| |..|--+|++ +.+.+.|.+.||-|-.
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHA 88 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHA 88 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEE
Confidence 78999999999999999997 4332222222 3567899999998864
No 98
>TIGR02567 YscW type III secretion system chaperone YscW. This family of proteins is found within type III secretion operons. The protein has been characterized as a chaperone for the outer membrane pore component YscC (TIGR02516). YscW is a lipoprotein which is itself localized to the outer membrane and, it is believed, facilitates the oligomerization and localization of YscC.
Probab=20.72 E-value=4.6e+02 Score=25.58 Aligned_cols=65 Identities=14% Similarity=-0.047 Sum_probs=37.3
Q ss_pred ceEEEEEEEE-ccCCcee-eEEeEEEEeCCCCeEEEEeeecCCCCCCCceEEEEEEEEEcCCCeEEeeeeeec
Q 045314 738 DVAIEASVWD-LDGACPY-YKVTEKLSVPPKKVVSIAEMKYPKTKNPKPVYFLLLKLYNMSDYGIISRNFYWL 808 (992)
Q Consensus 738 ~~~l~v~~~d-~~g~~~~-~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~l~l~L~d~~~g~~~s~N~yw~ 808 (992)
+++++++++| ++|+.+. .+...++...| --+++.++.....++..||+.+|.- +|+++..|.++.
T Consensus 37 ~a~i~V~i~~V~d~~~l~vA~~~y~~~~lP----v~FsF~l~~~q~~~g~~Yv~A~L~~--~g~~~~q~~~~~ 103 (124)
T TIGR02567 37 SAYIEVSMCQVVEGKVLTVAEQHYRGVQLP----VQYSFLLNPIQAGKGELYLRGKLSW--QGQRAVQAEAQQ 103 (124)
T ss_pred CCEEEEEEEEecCCceEEEEEeeccccccc----ccEEEEcCHHHhccCceEEEEEEEE--CCEEEEEEeeee
Confidence 5799999999 8887543 22211111111 1133333332222344559999975 688888887776
No 99
>PF14324 PINIT: PINIT domain; PDB: 3I2D_A.
Probab=20.22 E-value=77 Score=31.54 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=23.7
Q ss_pred eeEEEECCEEeEE-------EeCCeeeeEEeCCCCcCCC--CCcEEEEEEEC
Q 045314 115 SAEVYLNGQKRVL-------QKGMFRRHSLDVTDILHPD--GQNLLAVLVHP 157 (992)
Q Consensus 115 ~A~V~LNG~~vg~-------~~g~f~~~~~DIT~~Lk~g--g~N~L~V~v~~ 157 (992)
-.+|++||+.|-. ..|. .-=+|||++|+.. ..|.|.|.-.+
T Consensus 82 ~~evkvN~~~v~~~~~glknKpGt--~rPvdIT~~l~~~~~~~N~i~v~y~~ 131 (144)
T PF14324_consen 82 PCEVKVNGKQVKLNNRGLKNKPGT--ARPVDITPYLRLSPPQTNRIEVTYAN 131 (144)
T ss_dssp SEEEEETTEE--S--SS-TTS-GG--GS-EE-GGG---S-SS-EEEEEEEEE
T ss_pred CeEEEEeCEEcccCccCCCCCCCC--CCCcccchhhcccCCCCeEEEEEEeC
Confidence 5799999999952 2454 3448999999853 57888887554
Done!