BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045316
         (568 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
           Cys2his2 Zinc Finger Induces Structural Rearrangements
           Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
           Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 30.0 bits (66), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 405 QTYSCLICNKSFDKHQALGGHVASH 429
           ++Y+C  C + F   QALGGH+  H
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVH 29


>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
 pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
           Triplets
          Length = 190

 Score = 29.6 bits (65), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 16/90 (17%)

Query: 94  PRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNIN 153
           P  C ECGK F+  K L  H+R          TH  + P    +      + A    +  
Sbjct: 49  PYKCPECGKSFSDKKDLTRHQR----------THTGEKPYKCPECGKSFSQRANLRAHQR 98

Query: 154 NHI------CYVCHQSFRSVKSLYGHMRKH 177
            H       C  C +SF  +  L  H R H
Sbjct: 99  THTGEKPYACPECGKSFSQLAHLRAHQRTH 128


>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
           Burkholderia Thailandensis
 pdb|3UW1|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From
           Burkholderia Thailandensis With Ribose-5-Phosphate
          Length = 239

 Score = 29.6 bits (65), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 5/36 (13%)

Query: 377 NELDD--AVLEGTTAGGGALKEEPVVMSTAQTYSCL 410
           +E+D+  A+++G   GGGAL  E +V S A+T+ C+
Sbjct: 96  DEIDESGAMIKG---GGGALTREKIVASVAETFVCI 128


>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
           Protein 32
          Length = 42

 Score = 28.9 bits (63), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 94  PRTCSECGKQFTSGKALGGHKRACLQ 119
           P  C +CGK FT   +L  H+R+C Q
Sbjct: 11  PYLCGQCGKSFTQRGSLAVHQRSCSQ 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.130    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,308,896
Number of Sequences: 62578
Number of extensions: 382959
Number of successful extensions: 807
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 52
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)