Query 045316
Match_columns 568
No_of_seqs 442 out of 2632
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 12:01:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1074 Transcriptional repres 100.0 2.2E-32 4.8E-37 270.2 12.1 79 128-216 608-694 (958)
2 KOG3623 Homeobox transcription 100.0 1.1E-30 2.3E-35 253.6 13.3 110 60-175 211-330 (1007)
3 KOG1074 Transcriptional repres 100.0 1.5E-30 3.2E-35 257.4 8.1 57 284-340 602-658 (958)
4 KOG2462 C2H2-type Zn-finger pr 100.0 8.3E-31 1.8E-35 228.7 2.4 136 284-504 127-265 (279)
5 KOG2462 C2H2-type Zn-finger pr 99.9 3.9E-28 8.4E-33 212.1 3.3 98 287-449 161-258 (279)
6 KOG3608 Zn finger proteins [Ge 99.9 3.3E-26 7.2E-31 204.4 4.3 227 57-505 134-376 (467)
7 KOG3608 Zn finger proteins [Ge 99.8 1.2E-22 2.5E-27 181.9 0.8 121 58-191 178-302 (467)
8 KOG3576 Ovo and related transc 99.7 7.2E-18 1.6E-22 139.5 0.2 84 405-508 144-238 (267)
9 KOG3576 Ovo and related transc 99.5 1.5E-15 3.3E-20 125.9 2.2 57 59-122 117-173 (267)
10 KOG3623 Homeobox transcription 99.5 4.4E-15 9.5E-20 145.8 5.5 92 45-175 880-971 (1007)
11 PHA00733 hypothetical protein 99.2 7.2E-12 1.6E-16 101.6 1.1 84 401-506 35-123 (128)
12 PHA02768 hypothetical protein; 99.1 5E-11 1.1E-15 78.2 1.6 42 406-449 5-46 (55)
13 PLN03086 PRLI-interacting fact 99.0 9E-11 1.9E-15 117.4 3.4 94 394-505 468-564 (567)
14 KOG3993 Transcription factor ( 99.0 3.6E-11 7.9E-16 111.6 -1.1 52 93-178 266-319 (500)
15 PHA02768 hypothetical protein; 99.0 1.6E-10 3.5E-15 75.8 2.0 45 93-171 4-48 (55)
16 PLN03086 PRLI-interacting fact 99.0 2.5E-10 5.5E-15 114.2 4.0 123 60-192 408-552 (567)
17 PF13465 zf-H2C2_2: Zinc-finge 98.9 2.6E-10 5.6E-15 64.0 1.0 25 470-494 2-26 (26)
18 KOG3993 Transcription factor ( 98.9 1.6E-09 3.5E-14 100.8 5.5 113 58-178 266-380 (500)
19 PHA00733 hypothetical protein 98.9 1.7E-09 3.8E-14 87.8 4.8 80 60-177 41-122 (128)
20 PF13465 zf-H2C2_2: Zinc-finge 98.8 6.4E-10 1.4E-14 62.4 -0.0 25 421-445 1-25 (26)
21 PHA00616 hypothetical protein 98.6 6.3E-09 1.4E-13 64.8 0.5 35 406-440 1-35 (44)
22 PHA00732 hypothetical protein 98.5 9.5E-08 2.1E-12 69.8 2.6 37 406-445 1-38 (79)
23 PHA00616 hypothetical protein 98.4 9.3E-08 2E-12 59.6 1.3 31 94-124 1-31 (44)
24 PHA00732 hypothetical protein 98.4 1.4E-07 3E-12 68.9 2.5 47 94-178 1-48 (79)
25 PF00096 zf-C2H2: Zinc finger, 98.1 1.8E-06 3.9E-11 47.1 1.6 23 95-117 1-23 (23)
26 PF00096 zf-C2H2: Zinc finger, 98.1 1.4E-06 3E-11 47.6 0.8 23 155-177 1-23 (23)
27 PF05605 zf-Di19: Drought indu 98.0 7.2E-06 1.6E-10 55.6 3.5 50 94-177 2-52 (54)
28 PF12756 zf-C2H2_2: C2H2 type 97.8 9.1E-06 2E-10 64.1 1.9 73 96-177 1-73 (100)
29 PF13912 zf-C2H2_6: C2H2-type 97.8 6E-06 1.3E-10 47.1 0.2 26 482-507 1-26 (27)
30 COG5189 SFP1 Putative transcri 97.8 1.5E-05 3.3E-10 71.9 2.6 69 403-503 346-419 (423)
31 PF13894 zf-C2H2_4: C2H2-type 97.7 1.9E-05 4.1E-10 43.5 1.8 24 95-118 1-24 (24)
32 PF05605 zf-Di19: Drought indu 97.7 3.4E-05 7.4E-10 52.3 3.3 51 60-118 3-53 (54)
33 PF13912 zf-C2H2_6: C2H2-type 97.7 1.5E-05 3.2E-10 45.4 1.1 26 406-431 1-26 (27)
34 PF13894 zf-C2H2_4: C2H2-type 97.7 1.1E-05 2.3E-10 44.6 0.3 24 407-430 1-24 (24)
35 COG5189 SFP1 Putative transcri 97.6 1.7E-05 3.7E-10 71.6 1.2 71 91-175 346-419 (423)
36 PF12756 zf-C2H2_2: C2H2 type 97.5 3E-05 6.4E-10 61.2 0.1 73 408-505 1-73 (100)
37 PF09237 GAGA: GAGA factor; I 97.4 6.7E-05 1.5E-09 47.8 0.9 32 91-122 21-52 (54)
38 smart00355 ZnF_C2H2 zinc finge 97.2 0.00017 3.7E-09 40.4 1.3 24 407-430 1-24 (26)
39 KOG1146 Homeobox protein [Gene 97.2 0.00061 1.3E-08 74.0 6.2 106 57-176 434-540 (1406)
40 PF09237 GAGA: GAGA factor; I 97.2 0.00016 3.5E-09 46.1 1.1 34 401-434 19-52 (54)
41 smart00355 ZnF_C2H2 zinc finge 97.0 0.00045 9.6E-09 38.7 2.0 24 95-118 1-24 (26)
42 PRK04860 hypothetical protein; 96.9 0.00037 7.9E-09 58.9 1.0 38 406-447 119-156 (160)
43 PF12874 zf-met: Zinc-finger o 96.8 0.00034 7.3E-09 38.9 0.3 23 407-429 1-23 (25)
44 PF12874 zf-met: Zinc-finger o 96.7 0.00062 1.3E-08 37.8 0.7 23 95-117 1-23 (25)
45 PRK04860 hypothetical protein; 96.7 0.00082 1.8E-08 56.8 1.6 28 470-497 131-158 (160)
46 PF13909 zf-H2C2_5: C2H2-type 96.6 0.0014 3E-08 35.9 1.7 24 95-119 1-24 (24)
47 PF12171 zf-C2H2_jaz: Zinc-fin 96.5 0.0014 3E-08 37.1 1.2 22 407-428 2-23 (27)
48 COG5048 FOG: Zn-finger [Genera 96.4 0.034 7.5E-07 57.2 11.9 73 405-497 288-368 (467)
49 PF12171 zf-C2H2_jaz: Zinc-fin 96.3 0.0012 2.7E-08 37.3 0.4 23 483-505 2-24 (27)
50 KOG2231 Predicted E3 ubiquitin 96.2 0.0098 2.1E-07 61.4 6.3 30 155-187 116-146 (669)
51 PF13909 zf-H2C2_5: C2H2-type 96.1 0.0013 2.8E-08 36.0 -0.4 23 407-430 1-23 (24)
52 KOG2231 Predicted E3 ubiquitin 95.9 0.0072 1.6E-07 62.3 3.9 110 61-187 101-244 (669)
53 KOG2785 C2H2-type Zn-finger pr 95.0 0.02 4.2E-07 54.3 3.2 82 94-176 3-90 (390)
54 PF13913 zf-C2HC_2: zinc-finge 94.8 0.013 2.9E-07 32.2 0.9 21 407-428 3-23 (25)
55 PF13913 zf-C2HC_2: zinc-finge 94.6 0.024 5.2E-07 31.2 1.6 21 95-116 3-23 (25)
56 KOG2893 Zn finger protein [Gen 94.2 0.012 2.6E-07 51.3 -0.3 24 407-430 35-59 (341)
57 KOG2893 Zn finger protein [Gen 94.1 0.017 3.6E-07 50.4 0.4 47 96-178 12-59 (341)
58 KOG1146 Homeobox protein [Gene 94.0 0.017 3.8E-07 63.3 0.4 96 54-176 1255-1350(1406)
59 COG5048 FOG: Zn-finger [Genera 93.9 0.094 2E-06 53.9 5.7 156 286-441 288-453 (467)
60 smart00451 ZnF_U1 U1-like zinc 93.8 0.031 6.6E-07 33.8 1.2 23 406-428 3-25 (35)
61 COG5236 Uncharacterized conser 93.7 0.29 6.4E-06 45.5 7.6 118 64-198 158-303 (493)
62 KOG2482 Predicted C2H2-type Zn 93.6 0.049 1.1E-06 50.5 2.5 73 91-176 141-217 (423)
63 smart00451 ZnF_U1 U1-like zinc 93.4 0.045 9.8E-07 33.1 1.4 24 93-116 2-25 (35)
64 cd00350 rubredoxin_like Rubred 92.7 0.063 1.4E-06 31.9 1.2 24 407-442 2-25 (33)
65 COG4049 Uncharacterized protei 91.6 0.083 1.8E-06 34.5 0.9 28 90-117 13-40 (65)
66 cd00350 rubredoxin_like Rubred 91.5 0.078 1.7E-06 31.5 0.6 11 481-491 16-26 (33)
67 COG5236 Uncharacterized conser 90.6 0.23 5.1E-06 46.2 3.1 88 93-185 150-251 (493)
68 cd00729 rubredoxin_SM Rubredox 89.7 0.13 2.9E-06 30.7 0.6 10 481-490 17-26 (34)
69 PF09986 DUF2225: Uncharacteri 88.9 0.14 3E-06 46.2 0.4 44 405-448 4-62 (214)
70 KOG4173 Alpha-SNAP protein [In 88.9 0.27 5.9E-06 42.2 2.0 89 57-178 79-171 (253)
71 KOG2186 Cell growth-regulating 88.2 0.25 5.4E-06 44.1 1.4 50 435-507 4-53 (276)
72 KOG2482 Predicted C2H2-type Zn 87.4 0.58 1.3E-05 43.7 3.3 123 56-178 141-304 (423)
73 PHA00626 hypothetical protein 86.6 0.43 9.3E-06 31.5 1.4 16 481-496 22-37 (59)
74 COG1592 Rubrerythrin [Energy p 86.5 0.34 7.3E-06 41.1 1.2 15 476-490 143-157 (166)
75 PF10571 UPF0547: Uncharacteri 83.8 0.66 1.4E-05 25.7 1.2 10 484-493 16-25 (26)
76 PF09538 FYDLN_acid: Protein o 82.8 0.71 1.5E-05 36.2 1.4 29 61-107 11-39 (108)
77 COG4049 Uncharacterized protei 82.3 0.34 7.3E-06 31.8 -0.4 28 401-428 12-39 (65)
78 COG1997 RPL43A Ribosomal prote 82.3 0.51 1.1E-05 34.5 0.5 13 482-494 53-65 (89)
79 KOG4173 Alpha-SNAP protein [In 81.1 0.27 5.9E-06 42.2 -1.5 83 405-505 78-170 (253)
80 COG1592 Rubrerythrin [Energy p 80.5 0.96 2.1E-05 38.4 1.6 23 406-441 134-156 (166)
81 PF02892 zf-BED: BED zinc fing 80.5 1.1 2.4E-05 28.8 1.5 25 91-115 13-41 (45)
82 KOG4167 Predicted DNA-binding 80.4 0.12 2.5E-06 53.3 -4.6 29 481-509 791-819 (907)
83 PF09986 DUF2225: Uncharacteri 80.4 0.41 8.9E-06 43.2 -0.7 24 92-115 3-26 (214)
84 PF02892 zf-BED: BED zinc fing 80.3 0.9 1.9E-05 29.2 1.1 26 404-429 14-44 (45)
85 smart00614 ZnF_BED BED zinc fi 80.0 0.88 1.9E-05 30.1 1.0 24 407-430 19-48 (50)
86 TIGR00622 ssl1 transcription f 80.0 3.2 7E-05 32.5 4.2 89 92-188 13-110 (112)
87 PF15269 zf-C2H2_7: Zinc-finge 79.9 1.6 3.4E-05 27.3 1.9 22 155-176 21-42 (54)
88 TIGR00622 ssl1 transcription f 79.6 2.5 5.5E-05 33.1 3.5 78 406-505 15-104 (112)
89 PF09538 FYDLN_acid: Protein o 78.9 1.2 2.5E-05 35.0 1.5 15 481-495 25-39 (108)
90 smart00614 ZnF_BED BED zinc fi 78.9 1.4 3.1E-05 29.1 1.7 25 93-117 17-47 (50)
91 TIGR02605 CxxC_CxxC_SSSS putat 78.1 0.86 1.9E-05 30.4 0.5 30 406-442 5-34 (52)
92 PF13719 zinc_ribbon_5: zinc-r 77.4 1.3 2.8E-05 27.1 1.1 18 476-493 19-36 (37)
93 smart00834 CxxC_CXXC_SSSS Puta 76.9 0.96 2.1E-05 28.3 0.4 30 406-442 5-34 (41)
94 TIGR02098 MJ0042_CXXC MJ0042 f 76.7 1.3 2.8E-05 27.2 1.0 13 481-493 24-36 (38)
95 COG2888 Predicted Zn-ribbon RN 75.3 1.6 3.5E-05 29.4 1.1 32 406-442 27-58 (61)
96 smart00531 TFIIE Transcription 75.1 1.5 3.2E-05 37.0 1.2 39 404-447 97-136 (147)
97 PF13717 zinc_ribbon_4: zinc-r 74.1 2.1 4.5E-05 26.0 1.3 18 476-493 19-36 (36)
98 KOG2785 C2H2-type Zn-finger pr 73.7 3.9 8.4E-05 39.4 3.6 80 94-182 166-250 (390)
99 PRK00464 nrdR transcriptional 73.6 0.66 1.4E-05 39.1 -1.2 17 155-171 29-45 (154)
100 smart00659 RPOLCX RNA polymera 72.6 2 4.3E-05 27.4 1.0 28 406-444 2-29 (44)
101 TIGR00373 conserved hypothetic 71.0 2 4.4E-05 36.6 1.1 34 403-445 106-139 (158)
102 KOG2071 mRNA cleavage and poly 70.9 2.5 5.4E-05 43.3 1.8 28 403-430 415-442 (579)
103 KOG2186 Cell growth-regulating 70.4 2.9 6.2E-05 37.6 1.9 55 60-124 4-58 (276)
104 TIGR02300 FYDLN_acid conserved 69.9 2.8 6.1E-05 33.4 1.5 19 481-499 25-43 (129)
105 smart00531 TFIIE Transcription 69.8 1.6 3.5E-05 36.8 0.2 19 91-109 96-114 (147)
106 TIGR02300 FYDLN_acid conserved 69.7 2 4.4E-05 34.2 0.7 29 61-107 11-39 (129)
107 PRK06266 transcription initiat 69.1 2.3 4.9E-05 37.1 1.0 35 405-448 116-150 (178)
108 PRK00398 rpoP DNA-directed RNA 69.1 2.6 5.7E-05 27.2 1.1 12 482-493 21-32 (46)
109 PF05290 Baculo_IE-1: Baculovi 68.6 4.2 9E-05 32.7 2.2 61 402-497 76-136 (140)
110 TIGR00373 conserved hypothetic 68.5 4 8.7E-05 34.8 2.4 21 91-111 106-126 (158)
111 smart00734 ZnF_Rad18 Rad18-lik 67.9 3.9 8.4E-05 22.7 1.4 20 95-115 2-21 (26)
112 PF05443 ROS_MUCR: ROS/MUCR tr 67.9 2.6 5.6E-05 34.4 1.0 28 92-122 70-97 (132)
113 PRK06266 transcription initiat 66.7 2.4 5.3E-05 36.9 0.7 20 91-110 114-133 (178)
114 cd00730 rubredoxin Rubredoxin; 66.2 3 6.5E-05 27.5 0.9 9 482-490 34-42 (50)
115 COG1996 RPC10 DNA-directed RNA 66.1 2.7 5.9E-05 27.4 0.6 29 406-444 6-34 (49)
116 PF05443 ROS_MUCR: ROS/MUCR tr 66.0 2.5 5.3E-05 34.5 0.6 28 404-434 70-97 (132)
117 PF07754 DUF1610: Domain of un 65.8 3.1 6.7E-05 22.5 0.7 8 155-162 17-24 (24)
118 PF14353 CpXC: CpXC protein 65.3 3 6.5E-05 34.2 1.0 25 481-505 37-61 (128)
119 PRK14890 putative Zn-ribbon RN 64.6 2.9 6.3E-05 28.3 0.6 11 481-491 47-57 (59)
120 KOG1280 Uncharacterized conser 64.4 7.5 0.00016 36.8 3.4 40 403-442 76-117 (381)
121 PF09723 Zn-ribbon_8: Zinc rib 64.2 3 6.5E-05 26.3 0.6 11 480-490 24-34 (42)
122 PRK00464 nrdR transcriptional 63.2 2.6 5.7E-05 35.6 0.2 14 435-448 29-42 (154)
123 PF12013 DUF3505: Protein of u 60.6 5.7 0.00012 31.5 1.8 26 94-119 80-109 (109)
124 KOG4167 Predicted DNA-binding 59.7 2.2 4.9E-05 44.4 -0.9 28 92-119 790-817 (907)
125 PRK09678 DNA-binding transcrip 59.4 3 6.5E-05 29.9 -0.0 38 407-446 2-41 (72)
126 PF03604 DNA_RNApol_7kD: DNA d 59.2 6.3 0.00014 23.2 1.3 10 406-415 17-26 (32)
127 KOG4124 Putative transcription 58.4 5.8 0.00013 37.5 1.6 65 404-503 347-419 (442)
128 COG5151 SSL1 RNA polymerase II 57.8 7.8 0.00017 35.9 2.3 83 93-178 321-412 (421)
129 KOG2461 Transcription factor B 57.1 31 0.00068 34.4 6.5 76 395-490 320-395 (396)
130 KOG2807 RNA polymerase II tran 56.1 13 0.00027 35.0 3.3 73 92-178 288-369 (378)
131 PF06524 NOA36: NOA36 protein; 55.4 9.4 0.0002 34.5 2.3 26 405-430 208-233 (314)
132 COG1655 Uncharacterized protei 55.2 4.7 0.0001 35.8 0.4 39 405-443 18-71 (267)
133 PF14446 Prok-RING_1: Prokaryo 54.9 7.6 0.00016 25.9 1.3 13 482-494 21-33 (54)
134 PF12013 DUF3505: Protein of u 54.7 5.8 0.00013 31.4 0.9 26 406-431 80-109 (109)
135 COG4957 Predicted transcriptio 54.6 6.3 0.00014 31.7 1.0 26 406-434 76-101 (148)
136 PF13240 zinc_ribbon_2: zinc-r 54.3 5.5 0.00012 21.3 0.5 7 157-163 16-22 (23)
137 KOG2593 Transcription initiati 54.2 7.8 0.00017 38.1 1.8 32 155-188 129-160 (436)
138 PF15269 zf-C2H2_7: Zinc-finge 53.3 8.6 0.00019 24.1 1.2 23 94-116 20-42 (54)
139 KOG3408 U1-like Zn-finger-cont 53.0 7 0.00015 30.8 1.0 27 90-116 53-79 (129)
140 COG4530 Uncharacterized protei 52.6 7.1 0.00015 30.0 1.0 15 481-495 25-39 (129)
141 smart00661 RPOL9 RNA polymeras 52.3 6.9 0.00015 25.9 0.8 15 155-169 21-35 (52)
142 PF04959 ARS2: Arsenite-resist 50.7 7.7 0.00017 34.8 1.1 30 91-120 74-103 (214)
143 PRK04023 DNA polymerase II lar 50.5 11 0.00024 41.4 2.4 29 405-449 625-659 (1121)
144 COG1198 PriA Primosomal protei 50.0 11 0.00025 40.6 2.4 12 480-491 473-484 (730)
145 KOG2593 Transcription initiati 49.9 13 0.00029 36.6 2.6 40 400-442 122-161 (436)
146 PF08274 PhnA_Zn_Ribbon: PhnA 48.0 5.9 0.00013 22.8 -0.0 25 408-443 4-28 (30)
147 PRK04023 DNA polymerase II lar 47.8 12 0.00027 41.1 2.2 17 480-496 1035-1051(1121)
148 TIGR01206 lysW lysine biosynth 47.6 12 0.00026 25.1 1.4 12 482-493 22-33 (54)
149 COG3357 Predicted transcriptio 46.5 11 0.00024 27.9 1.2 28 405-442 57-84 (97)
150 PTZ00255 60S ribosomal protein 45.6 8.6 0.00019 28.8 0.5 13 481-493 53-65 (90)
151 PF01286 XPA_N: XPA protein N- 45.3 8.6 0.00019 22.9 0.4 8 155-162 22-29 (34)
152 KOG0978 E3 ubiquitin ligase in 44.4 7.9 0.00017 41.0 0.2 56 93-173 642-697 (698)
153 PF07649 C1_3: C1-like domain; 43.9 12 0.00025 21.5 0.8 12 481-492 14-25 (30)
154 PF04959 ARS2: Arsenite-resist 43.7 12 0.00025 33.7 1.1 24 155-178 78-102 (214)
155 TIGR00280 L37a ribosomal prote 43.1 8.6 0.00019 28.9 0.2 12 482-493 53-64 (91)
156 PF01363 FYVE: FYVE zinc finge 42.8 12 0.00025 26.6 0.8 15 481-495 24-38 (69)
157 PRK01343 zinc-binding protein; 42.0 26 0.00055 23.8 2.2 12 406-417 9-20 (57)
158 PF13878 zf-C2H2_3: zinc-finge 41.8 24 0.00053 22.1 2.0 25 94-118 13-39 (41)
159 PF06524 NOA36: NOA36 protein; 41.7 27 0.00059 31.7 3.1 13 179-191 207-219 (314)
160 smart00154 ZnF_AN1 AN1-like Zi 41.5 14 0.0003 22.9 0.9 15 482-496 12-26 (39)
161 KOG4124 Putative transcription 40.9 6 0.00013 37.4 -1.1 69 92-174 347-418 (442)
162 COG4957 Predicted transcriptio 40.4 21 0.00045 28.9 1.9 18 465-482 84-101 (148)
163 PF02176 zf-TRAF: TRAF-type zi 38.6 19 0.00042 24.6 1.4 42 155-197 10-58 (60)
164 KOG3362 Predicted BBOX Zn-fing 38.4 10 0.00022 30.9 -0.1 21 155-175 130-150 (156)
165 TIGR00595 priA primosomal prot 38.1 15 0.00033 38.2 1.2 37 407-444 214-250 (505)
166 PF12760 Zn_Tnp_IS1595: Transp 37.9 13 0.00029 23.9 0.4 27 407-442 19-45 (46)
167 PF08790 zf-LYAR: LYAR-type C2 37.6 15 0.00032 20.8 0.5 20 407-427 1-20 (28)
168 PRK03976 rpl37ae 50S ribosomal 36.9 12 0.00025 28.2 0.1 12 482-493 54-65 (90)
169 COG3677 Transposase and inacti 36.1 20 0.00043 29.4 1.3 16 480-495 51-66 (129)
170 PF05191 ADK_lid: Adenylate ki 36.0 21 0.00045 21.7 1.0 30 288-325 2-31 (36)
171 KOG2636 Splicing factor 3a, su 35.9 19 0.0004 35.6 1.2 27 400-426 395-422 (497)
172 COG2331 Uncharacterized protei 35.6 14 0.0003 26.4 0.3 34 434-494 12-45 (82)
173 COG3091 SprT Zn-dependent meta 35.1 17 0.00037 30.2 0.7 22 470-492 129-150 (156)
174 TIGR00100 hypA hydrogenase nic 35.0 17 0.00037 29.1 0.7 32 400-443 64-95 (115)
175 PF10013 DUF2256: Uncharacteri 34.4 20 0.00044 22.4 0.8 18 95-112 9-26 (42)
176 PF07295 DUF1451: Protein of u 34.3 20 0.00044 30.0 1.1 10 483-492 131-140 (146)
177 cd00065 FYVE FYVE domain; Zinc 34.3 22 0.00047 24.0 1.1 15 481-495 17-31 (57)
178 KOG4377 Zn-finger protein [Gen 34.2 19 0.00041 35.1 1.0 158 291-566 277-471 (480)
179 KOG0782 Predicted diacylglycer 34.2 14 0.00029 37.6 0.0 52 419-496 238-290 (1004)
180 COG4888 Uncharacterized Zn rib 33.9 12 0.00026 28.4 -0.3 39 403-445 19-57 (104)
181 KOG0717 Molecular chaperone (D 33.8 21 0.00045 35.6 1.2 22 95-116 293-314 (508)
182 PRK03824 hypA hydrogenase nick 33.2 20 0.00044 29.6 0.9 41 402-442 66-115 (135)
183 PF01428 zf-AN1: AN1-like Zinc 33.1 17 0.00036 23.1 0.3 16 481-496 12-27 (43)
184 COG1773 Rubredoxin [Energy pro 33.0 18 0.00039 24.3 0.5 13 481-493 2-14 (55)
185 PF14803 Nudix_N_2: Nudix N-te 32.7 18 0.00039 21.6 0.4 10 155-164 23-32 (34)
186 COG3091 SprT Zn-dependent meta 31.6 20 0.00044 29.8 0.6 33 405-442 116-148 (156)
187 PRK14873 primosome assembly pr 31.6 20 0.00043 38.7 0.7 35 407-442 384-418 (665)
188 PRK12380 hydrogenase nickel in 31.4 19 0.00041 28.7 0.5 14 405-418 69-82 (113)
189 PRK00432 30S ribosomal protein 30.8 27 0.00059 23.0 1.0 11 155-165 38-48 (50)
190 COG1571 Predicted DNA-binding 30.2 28 0.00062 34.6 1.5 17 482-498 367-383 (421)
191 PRK14559 putative protein seri 30.2 42 0.00091 36.0 2.8 11 407-417 16-26 (645)
192 KOG0978 E3 ubiquitin ligase in 30.1 17 0.00036 38.7 -0.1 21 482-502 678-698 (698)
193 PF12907 zf-met2: Zinc-binding 30.0 22 0.00047 22.2 0.4 31 407-437 2-36 (40)
194 KOG3408 U1-like Zn-finger-cont 29.3 17 0.00037 28.7 -0.2 26 479-504 54-79 (129)
195 PF13451 zf-trcl: Probable zin 29.3 23 0.00051 23.2 0.5 17 480-496 2-18 (49)
196 PF01155 HypA: Hydrogenase exp 28.7 13 0.00028 29.7 -0.9 12 406-417 70-81 (113)
197 PRK03681 hypA hydrogenase nick 28.6 26 0.00057 28.0 0.8 30 402-442 66-95 (114)
198 PTZ00303 phosphatidylinositol 28.6 19 0.00042 38.1 0.1 66 95-164 461-529 (1374)
199 KOG3507 DNA-directed RNA polym 28.5 26 0.00056 23.6 0.6 14 406-419 37-50 (62)
200 KOG4317 Predicted Zn-finger pr 28.5 11 0.00024 35.1 -1.4 33 125-174 7-39 (383)
201 COG0068 HypF Hydrogenase matur 28.2 28 0.00061 36.9 1.1 29 408-442 153-181 (750)
202 PF11494 Ta0938: Ta0938; Inte 27.9 41 0.00088 25.4 1.6 16 403-418 11-26 (105)
203 KOG2636 Splicing factor 3a, su 27.7 41 0.00089 33.4 2.0 25 91-115 398-423 (497)
204 smart00064 FYVE Protein presen 27.6 31 0.00068 24.3 1.0 14 481-494 25-38 (68)
205 cd00924 Cyt_c_Oxidase_Vb Cytoc 27.4 22 0.00047 27.4 0.1 21 474-495 72-92 (97)
206 PF02318 FYVE_2: FYVE-type zin 27.4 21 0.00046 28.7 0.1 47 407-490 55-102 (118)
207 KOG0320 Predicted E3 ubiquitin 27.3 18 0.00038 31.0 -0.4 17 92-108 129-145 (187)
208 PF04438 zf-HIT: HIT zinc fing 26.7 22 0.00048 20.5 0.1 11 155-165 14-24 (30)
209 cd02335 ZZ_ADA2 Zinc finger, Z 26.7 41 0.00088 22.0 1.3 25 481-505 14-44 (49)
210 PF15135 UPF0515: Uncharacteri 26.6 40 0.00088 30.5 1.7 18 401-418 107-124 (278)
211 PRK00564 hypA hydrogenase nick 26.4 27 0.00059 28.0 0.5 13 405-417 70-82 (117)
212 smart00249 PHD PHD zinc finger 26.0 38 0.00081 21.2 1.1 12 433-444 13-24 (47)
213 KOG0717 Molecular chaperone (D 25.8 31 0.00068 34.4 0.9 22 155-176 293-314 (508)
214 PF10276 zf-CHCC: Zinc-finger 25.7 28 0.00061 21.7 0.4 12 405-416 28-39 (40)
215 PF06220 zf-U1: U1 zinc finger 25.4 40 0.00087 20.7 1.0 23 93-115 2-26 (38)
216 PF09332 Mcm10: Mcm10 replicat 25.1 12 0.00027 36.2 -1.9 40 405-444 251-295 (344)
217 PF05129 Elf1: Transcription e 25.1 16 0.00036 27.0 -0.9 15 481-495 45-59 (81)
218 PF04641 Rtf2: Rtf2 RING-finge 25.0 15 0.00033 34.4 -1.3 17 91-107 110-126 (260)
219 PF06906 DUF1272: Protein of u 24.9 24 0.00051 23.7 -0.1 13 155-167 42-54 (57)
220 PF14445 Prok-RING_2: Prokaryo 24.4 12 0.00025 24.3 -1.5 11 435-445 8-18 (57)
221 PF09845 DUF2072: Zn-ribbon co 24.4 36 0.00078 27.6 0.9 15 482-496 1-15 (131)
222 PF10263 SprT-like: SprT-like 24.3 24 0.00051 30.0 -0.2 31 406-444 123-153 (157)
223 PRK00420 hypothetical protein; 24.1 44 0.00096 26.5 1.3 13 482-494 40-52 (112)
224 KOG1813 Predicted E3 ubiquitin 24.0 41 0.00088 31.5 1.2 29 405-441 240-268 (313)
225 PF07975 C1_4: TFIIH C1-like d 23.5 32 0.0007 22.8 0.4 26 405-430 20-45 (51)
226 KOG2071 mRNA cleavage and poly 23.3 52 0.0011 34.1 2.0 29 91-119 415-443 (579)
227 COG5188 PRP9 Splicing factor 3 22.9 39 0.00085 32.2 0.9 27 400-426 368-395 (470)
228 PF11789 zf-Nse: Zinc-finger o 22.8 45 0.00098 22.7 1.0 12 406-417 11-22 (57)
229 COG5151 SSL1 RNA polymerase II 22.2 32 0.00069 32.1 0.2 25 481-505 387-411 (421)
230 KOG2461 Transcription factor B 22.2 4.6E+02 0.01 26.4 8.2 73 413-505 310-382 (396)
231 COG4338 Uncharacterized protei 22.1 30 0.00064 22.2 -0.0 18 95-112 13-30 (54)
232 PRK14714 DNA polymerase II lar 21.8 56 0.0012 37.4 2.0 12 406-417 692-703 (1337)
233 PF11931 DUF3449: Domain of un 21.5 31 0.00067 30.4 0.0 25 91-115 98-123 (196)
234 COG5152 Uncharacterized conser 21.5 37 0.00081 29.4 0.5 18 90-107 192-209 (259)
235 PRK00762 hypA hydrogenase nick 21.4 46 0.00099 27.1 1.0 34 403-442 67-100 (124)
236 PF04423 Rad50_zn_hook: Rad50 21.4 34 0.00073 22.9 0.2 12 484-495 22-33 (54)
237 PF00301 Rubredoxin: Rubredoxi 21.3 33 0.00072 22.3 0.1 13 95-107 2-14 (47)
238 PF04810 zf-Sec23_Sec24: Sec23 21.2 21 0.00045 22.2 -0.8 20 472-491 14-33 (40)
239 COG1571 Predicted DNA-binding 21.1 40 0.00087 33.6 0.7 31 61-109 352-382 (421)
240 KOG1280 Uncharacterized conser 21.1 75 0.0016 30.5 2.4 31 92-122 77-107 (381)
241 PF01780 Ribosomal_L37ae: Ribo 21.1 29 0.00063 26.1 -0.2 12 155-166 54-65 (90)
242 PTZ00303 phosphatidylinositol 21.0 62 0.0013 34.6 2.0 36 407-449 461-497 (1374)
243 COG1656 Uncharacterized conser 20.4 54 0.0012 27.9 1.2 24 92-115 128-151 (165)
244 PRK05580 primosome assembly pr 20.2 47 0.001 36.2 1.0 47 407-489 382-428 (679)
245 PF14311 DUF4379: Domain of un 20.2 59 0.0013 21.8 1.2 27 407-440 29-55 (55)
246 COG1779 C4-type Zn-finger prot 20.2 29 0.00062 30.4 -0.5 35 406-446 14-55 (201)
247 KOG3214 Uncharacterized Zn rib 20.1 34 0.00074 26.0 -0.0 15 155-169 48-62 (109)
No 1
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.98 E-value=2.2e-32 Score=270.17 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=69.0
Q ss_pred cCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhhCCCC-----Ccccc---CCCchhHHHHHhhC
Q 045316 128 NNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKHPER-----EWRGV---QPPKHYLLNHRRQH 199 (568)
Q Consensus 128 c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~-----~~~C~---~c~~~~l~~H~~~h 199 (568)
|-.|-++..-...|+.|.++|+|||| |+|.+||+.|.++++|+.||-+|..+ +|.|+ +|.+.|
T Consensus 608 CiiC~rVlSC~saLqmHyrtHtGERP-FkCKiCgRAFtTkGNLkaH~~vHka~p~~R~q~ScP~~~ic~~kf-------- 678 (958)
T KOG1074|consen 608 CIICLRVLSCPSALQMHYRTHTGERP-FKCKICGRAFTTKGNLKAHMSVHKAKPPARVQFSCPSTFICQKKF-------- 678 (958)
T ss_pred eeeeeecccchhhhhhhhhcccCcCc-cccccccchhccccchhhcccccccCccccccccCCchhhhcccc--------
Confidence 44567777778999999999999999 99999999999999999999999843 58898 898888
Q ss_pred CCCCCCCcccccccCCC
Q 045316 200 PSPSSSPTIHYRLSRDN 216 (568)
Q Consensus 200 ~~~~~~l~~h~~~~~~~ 216 (568)
.+.-.|.+|+++|.+.
T Consensus 679 -tn~V~lpQhIriH~~~ 694 (958)
T KOG1074|consen 679 -TNAVTLPQHIRIHLGG 694 (958)
T ss_pred -cccccccceEEeecCC
Confidence 7778889999998854
No 2
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.97 E-value=1.1e-30 Score=253.57 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=99.3
Q ss_pred cchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccC----------CCCcccC
Q 045316 60 AAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIK----------NGTTHNN 129 (568)
Q Consensus 60 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~----------~~~~~c~ 129 (568)
.+|.+|++.+.....|++|++..+. ..+..|.|..|.++|.++..|.+||.+|..-.+ .+++.|.
T Consensus 211 ltcpycdrgykrltslkeHikyrhe-----kne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCt 285 (1007)
T KOG3623|consen 211 LTCPYCDRGYKRLTSLKEHIKYRHE-----KNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCT 285 (1007)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHh-----hCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccccc
Confidence 3789999999999999999887663 366789999999999999999999999965433 3678889
Q ss_pred CCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhh
Q 045316 130 QNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMR 175 (568)
Q Consensus 130 ~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~ 175 (568)
.|++.|+-+.+|+.|+|+|.|++| |.|+.|+|+|+..+.+..||-
T Consensus 286 ECgKAFKfKHHLKEHlRIHSGEKP-feCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 286 ECGKAFKFKHHLKEHLRIHSGEKP-FECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred ccchhhhhHHHHHhhheeecCCCC-cCCcccccccccCCccccccc
Confidence 999999999999999999999999 999999999999999999984
No 3
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=99.96 E-value=1.5e-30 Score=257.37 Aligned_cols=57 Identities=5% Similarity=-0.096 Sum_probs=50.5
Q ss_pred hhccccccccccccccccccccccccccCCCccccccccCCCCCCCCCCcchHHhhh
Q 045316 284 LLAQLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKK 340 (568)
Q Consensus 284 ~~~~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~ 340 (568)
...+..|-+|-+...-+++|+.|.|.|+|++||+|.+||+.|.++-+|..|+-.+..
T Consensus 602 ~TdPNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka 658 (958)
T KOG1074|consen 602 RTDPNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKA 658 (958)
T ss_pred cCCccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhccccccc
Confidence 345778999999999999999999999999999999999999999997776665553
No 4
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.96 E-value=8.3e-31 Score=228.71 Aligned_cols=136 Identities=19% Similarity=0.288 Sum_probs=126.3
Q ss_pred hhccccccccccccccccccccccccccCC---CccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCc
Q 045316 284 LLAQLSADDCNDNKEQRGTFDHHRVVSSVD---SGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSE 360 (568)
Q Consensus 284 ~~~~~~C~~C~~~F~~~~~L~~H~~~h~~~---~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (568)
....|+|+.||+.+.+.+.|.+|+..|-.- +.+.|..|++.+.....
T Consensus 127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpA------------------------------ 176 (279)
T KOG2462|consen 127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPA------------------------------ 176 (279)
T ss_pred cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHH------------------------------
Confidence 346899999999999999999999988653 78999999999888777
Q ss_pred chhhHhhhhhHhhhccccccchhhcccccCCCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316 361 DMWTKKQQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS 440 (568)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 440 (568)
|..|+++|+ -+++|.+|||.|.+.+-|+.|+|+|||||||.|+.|
T Consensus 177 ---------------------------------LkMHirTH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC 221 (279)
T KOG2462|consen 177 ---------------------------------LKMHIRTHT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHC 221 (279)
T ss_pred ---------------------------------HhhHhhccC--CCcccccccccccchHHhhcccccccCCCCccCCcc
Confidence 888999998 569999999999999999999999999999999999
Q ss_pred chhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCccccccccccc
Q 045316 441 ASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRC 504 (568)
Q Consensus 441 ~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~ 504 (568)
+++|.+.+. |+.||.+|++.|+|+|..|+|+|..++.|.+|...
T Consensus 222 ~kAFADRSN--------------------LRAHmQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 222 GKAFADRSN--------------------LRAHMQTHSDVKKHQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred cchhcchHH--------------------HHHHHHhhcCCccccCcchhhHHHHHHHHHHhhhh
Confidence 999999886 99999999999999999999999999999999754
No 5
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=99.94 E-value=3.9e-28 Score=212.07 Aligned_cols=98 Identities=15% Similarity=0.133 Sum_probs=89.3
Q ss_pred cccccccccccccccccccccccccCCCccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCcchhhHh
Q 045316 287 QLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKK 366 (568)
Q Consensus 287 ~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (568)
.+.|++|++.|.+..+|..|+++|+ -+.+|.+||+.|.+.|.
T Consensus 161 a~~C~~C~K~YvSmpALkMHirTH~--l~c~C~iCGKaFSRPWL------------------------------------ 202 (279)
T KOG2462|consen 161 AFSCKYCGKVYVSMPALKMHIRTHT--LPCECGICGKAFSRPWL------------------------------------ 202 (279)
T ss_pred cccCCCCCceeeehHHHhhHhhccC--CCcccccccccccchHH------------------------------------
Confidence 4669999999999999999999997 58999999999999999
Q ss_pred hhhhHhhhccccccchhhcccccCCCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhc
Q 045316 367 QQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAE 446 (568)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~ 446 (568)
|+.|+|.|||||||.|..|+|+|..+++|+.||++|.+.|+|+|..|+|.|..
T Consensus 203 ---------------------------LQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 203 ---------------------------LQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred ---------------------------hhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999666666554
Q ss_pred cCc
Q 045316 447 DSK 449 (568)
Q Consensus 447 ~~~ 449 (568)
.++
T Consensus 256 ~Sy 258 (279)
T KOG2462|consen 256 KSY 258 (279)
T ss_pred HHH
Confidence 443
No 6
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.92 E-value=3.3e-26 Score=204.43 Aligned_cols=227 Identities=15% Similarity=0.224 Sum_probs=171.9
Q ss_pred ccccchhhHhHhhcchHHHHHHHHHhhcc-----ccCCCCC-CCcccc--ccccccCCchhHHHHHHHhccccCCCCccc
Q 045316 57 PAAAAAEADDRQFMEEDLLLQREQEQDQQ-----DRGGVLG-LPRTCS--ECGKQFTSGKALGGHKRACLQKIKNGTTHN 128 (568)
Q Consensus 57 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~-----~~~~~~~-~~~~C~--~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c 128 (568)
.+.|.-+.|+..|.+...|..|+-.|.-. ...+..+ ..+.|. .|-+.|.+++.|++|+++|+++|. ..|
T Consensus 134 ~f~C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKv---vAC 210 (467)
T KOG3608|consen 134 NFRCGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKV---VAC 210 (467)
T ss_pred hhccChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeE---Eec
Confidence 55667788999999999999999877521 1112223 347775 599999999999999999999998 555
Q ss_pred CCCchhhhhhhccchhhhhhc--CCcCCcccccccccccCchhHHHHhhhCCCCCccccCCCchhHHHHHhhCCCCCCCC
Q 045316 129 NQNPRLIKKAVAVKPEEAGEE--GNINNHICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPPKHYLLNHRRQHPSPSSSP 206 (568)
Q Consensus 129 ~~c~~~f~~~~~l~~H~~~h~--~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~C~~c~~~~l~~H~~~h~~~~~~l 206 (568)
..|+..|.+...|-.|++..+ ...+ |.|..|.|+|.+...|+.|++.|-
T Consensus 211 p~Cg~~F~~~tkl~DH~rRqt~l~~n~-fqC~~C~KrFaTeklL~~Hv~rHv---------------------------- 261 (467)
T KOG3608|consen 211 PHCGELFRTKTKLFDHLRRQTELNTNS-FQCAQCFKRFATEKLLKSHVVRHV---------------------------- 261 (467)
T ss_pred chHHHHhccccHHHHHHHhhhhhcCCc-hHHHHHHHHHhHHHHHHHHHHHhh----------------------------
Confidence 566888888888888876543 2334 888888888888888888888773
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccccccCccccCCCCCCCCCChhHHHHHHHHhhhhhhhc
Q 045316 207 TIHYRLSRDNRDHDHYDDDGYDVDGSMGSGGEDLVESLRGWSAKRKRGQRLIMSSSSDEDEDEDEEEAMQQAVSDLLLLA 286 (568)
Q Consensus 207 ~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (568)
.
T Consensus 262 -------------------------------------------------------------------------------n 262 (467)
T KOG3608|consen 262 -------------------------------------------------------------------------------N 262 (467)
T ss_pred -------------------------------------------------------------------------------h
Confidence 2
Q ss_pred cccccccccccccccccccccccccCCCccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCcchhhHh
Q 045316 287 QLSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKK 366 (568)
Q Consensus 287 ~~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (568)
-|+|+.|..+....+.|..|++.-
T Consensus 263 ~ykCplCdmtc~~~ssL~~H~r~r-------------------------------------------------------- 286 (467)
T KOG3608|consen 263 CYKCPLCDMTCSSASSLTTHIRYR-------------------------------------------------------- 286 (467)
T ss_pred cccccccccCCCChHHHHHHHHhh--------------------------------------------------------
Confidence 356888888888888888887642
Q ss_pred hhhhHhhhccccccchhhcccccCCCCCcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccc--cchhh
Q 045316 367 QQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESS--SASAA 444 (568)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~~~f 444 (568)
|...|||+|+.|++.|.+.+.|.+|..+|+ +-.|+|+. |.++|
T Consensus 287 ----------------------------------Hs~dkpfKCd~Cd~~c~~esdL~kH~~~HS-~~~y~C~h~~C~~s~ 331 (467)
T KOG3608|consen 287 ----------------------------------HSKDKPFKCDECDTRCVRESDLAKHVQVHS-KTVYQCEHPDCHYSV 331 (467)
T ss_pred ----------------------------------hccCCCccccchhhhhccHHHHHHHHHhcc-ccceecCCCCCcHHH
Confidence 444678999999999999999999998888 66799976 55555
Q ss_pred hccCchhhhhhhhhcccccccchHHHHHHHhcCC-C--CCceeCCccccccCcccccccc-cccC
Q 045316 445 AEDSKGEDKLAAAASDEETGESSRELAAAAAGGG-G--SSEHKCNICNKIFPTGQALGGH-KRCH 505 (568)
Q Consensus 445 ~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~-~--~k~f~C~~C~k~F~~~~~L~~H-~r~H 505 (568)
...- .|++|++-+. | +-+|.|..|++.|++..+|.+| ||.|
T Consensus 332 r~~~--------------------q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~kkH 376 (467)
T KOG3608|consen 332 RTYT--------------------QMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLMKKH 376 (467)
T ss_pred HHHH--------------------HHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHHHhh
Confidence 3322 2777776543 4 4579999999999999999999 5666
No 7
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=99.85 E-value=1.2e-22 Score=181.90 Aligned_cols=121 Identities=15% Similarity=0.172 Sum_probs=107.1
Q ss_pred cccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhc--cccCCCCcccCCCchhh
Q 045316 58 AAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACL--QKIKNGTTHNNQNPRLI 135 (568)
Q Consensus 58 ~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~--~~~~~~~~~c~~c~~~f 135 (568)
..|.-..|-+.|.+++.|++|++.|. ++|...|+.||..|+++..|-.|++.-+ ...+| .|..|.+.|
T Consensus 178 ~~C~W~~Ct~~~~~k~~LreH~r~Hs-------~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~f---qC~~C~KrF 247 (467)
T KOG3608|consen 178 TMCNWAMCTKHMGNKYRLREHIRTHS-------NEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSF---QCAQCFKRF 247 (467)
T ss_pred eeccchhhhhhhccHHHHHHHHHhcC-------CCeEEecchHHHHhccccHHHHHHHhhhhhcCCch---HHHHHHHHH
Confidence 34555679999999999999999998 7999999999999999999999998543 44564 455779999
Q ss_pred hhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhh-CC-CCCccccCCCchh
Q 045316 136 KKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRK-HP-EREWRGVQPPKHY 191 (568)
Q Consensus 136 ~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~-~~~~~C~~c~~~~ 191 (568)
.+...|+.|+..|..- |+|+.|+.+....+.|.+||+. |. .|||+|..|++.+
T Consensus 248 aTeklL~~Hv~rHvn~---ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c 302 (467)
T KOG3608|consen 248 ATEKLLKSHVVRHVNC---YKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRC 302 (467)
T ss_pred hHHHHHHHHHHHhhhc---ccccccccCCCChHHHHHHHHhhhccCCCccccchhhhh
Confidence 9999999999999987 9999999999999999999986 77 8999999998665
No 8
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.67 E-value=7.2e-18 Score=139.53 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=69.0
Q ss_pred CcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh-cCC-----
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA-GGG----- 478 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~-~H~----- 478 (568)
|.|-|..|||.|..--.|++|+|+|+|.+||+|..|+++|.+.-. |..|++ +|.
T Consensus 144 kr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcs--------------------leshl~kvhgv~~~y 203 (267)
T KOG3576|consen 144 KRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCS--------------------LESHLKKVHGVQHQY 203 (267)
T ss_pred HHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhcc--------------------HHHHHHHHcCchHHH
Confidence 468899999999999999999999999999999888888875433 666653 343
Q ss_pred -----CCCceeCCccccccCcccccccccccCcCC
Q 045316 479 -----GSSEHKCNICNKIFPTGQALGGHKRCHWTG 508 (568)
Q Consensus 479 -----~~k~f~C~~C~k~F~~~~~L~~H~r~H~~~ 508 (568)
..|.|.|+.||.+-.....+..|++.|+..
T Consensus 204 aykerr~kl~vcedcg~t~~~~e~~~~h~~~~hp~ 238 (267)
T KOG3576|consen 204 AYKERRAKLYVCEDCGYTSERPEVYYLHLKLHHPF 238 (267)
T ss_pred HHHHhhhheeeecccCCCCCChhHHHHHHHhcCCC
Confidence 357899999999999999999999998543
No 9
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=99.55 E-value=1.5e-15 Score=125.89 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=44.3
Q ss_pred ccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccC
Q 045316 59 AAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIK 122 (568)
Q Consensus 59 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 122 (568)
...|..|+|.|.-...|.+|++-|. ..+.|-|..|||.|..--.|++|+|+|+|.+|
T Consensus 117 ~ftCrvCgK~F~lQRmlnrh~kch~-------~vkr~lct~cgkgfndtfdlkrh~rthtgvrp 173 (267)
T KOG3576|consen 117 SFTCRVCGKKFGLQRMLNRHLKCHS-------DVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRP 173 (267)
T ss_pred eeeeehhhhhhhHHHHHHHHhhhcc-------HHHHHHHhhccCcccchhhhhhhhccccCccc
Confidence 3467788888888888888887776 56778888888888888888888888877777
No 10
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=99.54 E-value=4.4e-15 Score=145.83 Aligned_cols=92 Identities=22% Similarity=0.275 Sum_probs=80.6
Q ss_pred ccccccCCCCCCccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCC
Q 045316 45 LSLKLKIPITKPPAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNG 124 (568)
Q Consensus 45 ~~~~~~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~ 124 (568)
.......+.......|.|+.|+|.|...+.|.+|.-.|. |.+||+|.+|.|.|+.+..|..|+|.|.|+||
T Consensus 880 s~k~~tk~~kte~gmyaCDqCDK~FqKqSSLaRHKYEHs-------GqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKP-- 950 (1007)
T KOG3623|consen 880 SGKAETKHAKTEDGMYACDQCDKAFQKQSSLARHKYEHS-------GQRPYQCIICKKAFKHKHHLTEHKRLHSGEKP-- 950 (1007)
T ss_pred ccccccccccCccccchHHHHHHHHHhhHHHHHhhhhhc-------CCCCcccchhhHhhhhhhhhhhhhhhccCCCc--
Confidence 333334455666778889999999999999999999888 89999999999999999999999999999988
Q ss_pred CcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhh
Q 045316 125 TTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMR 175 (568)
Q Consensus 125 ~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~ 175 (568)
|.|+.|+|+|+..+.+..||.
T Consensus 951 ------------------------------fQCdKClKRFSHSGSYSQHMN 971 (1007)
T KOG3623|consen 951 ------------------------------FQCDKCLKRFSHSGSYSQHMN 971 (1007)
T ss_pred ------------------------------chhhhhhhhcccccchHhhhc
Confidence 999999999999999999993
No 11
>PHA00733 hypothetical protein
Probab=99.16 E-value=7.2e-12 Score=101.64 Aligned_cols=84 Identities=10% Similarity=0.040 Sum_probs=69.8
Q ss_pred cCCCCcccccccccccCChhhhhhh--hh---cCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh
Q 045316 401 MSTAQTYSCLICNKSFDKHQALGGH--VA---SHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA 475 (568)
Q Consensus 401 h~~~k~~~C~~C~k~F~~~~~L~~H--~~---~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~ 475 (568)
....+++.|.+|++.|.....|..| ++ .+.+++||.|+.||+.|..... |..|++
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~--------------------L~~H~r 94 (128)
T PHA00733 35 TPEQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVS--------------------LKQHIR 94 (128)
T ss_pred ChhhhhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHH--------------------HHHHHh
Confidence 3345789999999999998888877 22 3456899999999999877665 899999
Q ss_pred cCCCCCceeCCccccccCcccccccccccCc
Q 045316 476 GGGGSSEHKCNICNKIFPTGQALGGHKRCHW 506 (568)
Q Consensus 476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~ 506 (568)
+| +.+|.|.+|++.|.....|.+|++..+
T Consensus 95 ~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 95 YT--EHSKVCPVCGKEFRNTDSTLDHVCKKH 123 (128)
T ss_pred cC--CcCccCCCCCCccCCHHHHHHHHHHhc
Confidence 87 458999999999999999999987653
No 12
>PHA02768 hypothetical protein; Provisional
Probab=99.06 E-value=5e-11 Score=78.17 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=37.9
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCc
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSK 449 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~ 449 (568)
-|.|+.|||.|...++|.+||++|+ ++|+|..|++.|...+.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~ 46 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGE 46 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccce
Confidence 3999999999999999999999999 79999999998875543
No 13
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.05 E-value=9e-11 Score=117.36 Aligned_cols=94 Identities=14% Similarity=0.242 Sum_probs=71.1
Q ss_pred CcccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCc--hhhhhhhhhcccccccchHHHH
Q 045316 394 LKEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSK--GEDKLAAAASDEETGESSRELA 471 (568)
Q Consensus 394 l~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~--~f~~~~~l~~h~~~~~~~~~L~ 471 (568)
|..|+.++. ++|.|+ ||+.| .+..|..|+++|.+++|+.|+.|++.|..... .+.. .+..|.
T Consensus 468 LekH~~~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d------------~~s~Lt 531 (567)
T PLN03086 468 MEKHMKVFH--EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRD------------RLRGMS 531 (567)
T ss_pred HHHHHHhcC--CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhh------------hhhhHH
Confidence 667777764 789999 99866 67999999999999999999999998842211 0100 112388
Q ss_pred HHHhcCCCCCceeCCccccccCccccccccc-ccC
Q 045316 472 AAAAGGGGSSEHKCNICNKIFPTGQALGGHK-RCH 505 (568)
Q Consensus 472 ~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~-r~H 505 (568)
.|..+. |.+++.|..||+.|..+ .|..|+ ..|
T Consensus 532 ~HE~~C-G~rt~~C~~Cgk~Vrlr-dm~~H~~~~h 564 (567)
T PLN03086 532 EHESIC-GSRTAPCDSCGRSVMLK-EMDIHQIAVH 564 (567)
T ss_pred HHHHhc-CCcceEccccCCeeeeh-hHHHHHHHhh
Confidence 898886 99999999999988765 577774 444
No 14
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=99.01 E-value=3.6e-11 Score=111.57 Aligned_cols=52 Identities=23% Similarity=0.383 Sum_probs=44.2
Q ss_pred CCccccccccccCCchhHHHHHH--HhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhH
Q 045316 93 LPRTCSECGKQFTSGKALGGHKR--ACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSL 170 (568)
Q Consensus 93 ~~~~C~~C~k~F~~~~~L~~H~~--~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L 170 (568)
..|.|.+|...|.+.-.|.+|.= +-+-| |+|+.|+|+|+...+|
T Consensus 266 GdyiCqLCK~kYeD~F~LAQHrC~RIV~vE----------------------------------YrCPEC~KVFsCPANL 311 (500)
T KOG3993|consen 266 GDYICQLCKEKYEDAFALAQHRCPRIVHVE----------------------------------YRCPECDKVFSCPANL 311 (500)
T ss_pred HHHHHHHHHHhhhhHHHHhhccCCeeEEee----------------------------------ecCCcccccccCchhh
Confidence 45999999999999999998863 11111 9999999999999999
Q ss_pred HHHhhhCC
Q 045316 171 YGHMRKHP 178 (568)
Q Consensus 171 ~~H~~~H~ 178 (568)
..|.|||.
T Consensus 312 ASHRRWHK 319 (500)
T KOG3993|consen 312 ASHRRWHK 319 (500)
T ss_pred hhhhcccC
Confidence 99999997
No 15
>PHA02768 hypothetical protein; Provisional
Probab=99.00 E-value=1.6e-10 Score=75.83 Aligned_cols=45 Identities=18% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHH
Q 045316 93 LPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLY 171 (568)
Q Consensus 93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~ 171 (568)
-.|.|+.||+.|....+|.+||++|+ ++ |+|..|++.|.+.+.|.
T Consensus 4 ~~y~C~~CGK~Fs~~~~L~~H~r~H~--k~--------------------------------~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 4 LGYECPICGEIYIKRKSMITHLRKHN--TN--------------------------------LKLSNCKRISLRTGEYI 48 (55)
T ss_pred cccCcchhCCeeccHHHHHHHHHhcC--Cc--------------------------------ccCCcccceecccceeE
Confidence 35899999999999999999999987 44 88888899888877764
No 16
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.99 E-value=2.5e-10 Score=114.19 Aligned_cols=123 Identities=10% Similarity=0.083 Sum_probs=94.5
Q ss_pred cchhhHhHhhcchHHHHHHHHHhhccc------------cCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcc
Q 045316 60 AAAEADDRQFMEEDLLLQREQEQDQQD------------RGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTH 127 (568)
Q Consensus 60 ~~C~~C~k~f~~~~~L~~H~~~h~~~~------------~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~ 127 (568)
..|..|.+..... .|..|........ .....++.+.|++|++.|. ...|..|+++|+ +++.|.
T Consensus 408 V~C~NC~~~i~l~-~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~-~s~LekH~~~~H--kpv~Cp- 482 (567)
T PLN03086 408 VECRNCKHYIPSR-SIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQ-QGEMEKHMKVFH--EPLQCP- 482 (567)
T ss_pred EECCCCCCccchh-HHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccc-hHHHHHHHHhcC--CCccCC-
Confidence 3678888766554 5557776543110 0112356789999999996 688999999986 676665
Q ss_pred cCCCchhhhhhhccchhhhhhcCCcCCccccccccccc----------CchhHHHHhhhCCCCCccccCCCchhH
Q 045316 128 NNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFR----------SVKSLYGHMRKHPEREWRGVQPPKHYL 192 (568)
Q Consensus 128 c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~----------~~~~L~~H~~~H~~~~~~C~~c~~~~l 192 (568)
|++.+ .+..|..|+.+|.+.++ +.|++|++.|. ....|..|+.++..+++.|..|++.+.
T Consensus 483 ---Cg~~~-~R~~L~~H~~thCp~Kp-i~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cgk~Vr 552 (567)
T PLN03086 483 ---CGVVL-EKEQMVQHQASTCPLRL-ITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAPCDSCGRSVM 552 (567)
T ss_pred ---CCCCc-chhHHHhhhhccCCCCc-eeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceEccccCCeee
Confidence 77655 56899999999999999 99999999995 245899999998899999999997763
No 17
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.94 E-value=2.6e-10 Score=64.00 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=23.8
Q ss_pred HHHHHhcCCCCCceeCCccccccCc
Q 045316 470 LAAAAAGGGGSSEHKCNICNKIFPT 494 (568)
Q Consensus 470 L~~H~~~H~~~k~f~C~~C~k~F~~ 494 (568)
|.+||++|+|+|||+|++|+++|.+
T Consensus 2 l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 2 LRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHSSSSSEEESSSSEEESS
T ss_pred HHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 8999999999999999999999974
No 18
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=98.90 E-value=1.6e-09 Score=100.82 Aligned_cols=113 Identities=17% Similarity=0.265 Sum_probs=74.6
Q ss_pred cccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhh
Q 045316 58 AAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKK 137 (568)
Q Consensus 58 ~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~ 137 (568)
..|.|..|...|..-..|.+|.-... ..--|+|+.|+|+|+-..+|..|.|.|.-...-...--+.-.+....
T Consensus 266 GdyiCqLCK~kYeD~F~LAQHrC~RI-------V~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~ 338 (500)
T KOG3993|consen 266 GDYICQLCKEKYEDAFALAQHRCPRI-------VHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVET 338 (500)
T ss_pred HHHHHHHHHHhhhhHHHHhhccCCee-------EEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhh
Confidence 35688999999999999999964322 23569999999999999999999999964332110000000000011
Q ss_pred hhccchhhhh--hcCCcCCcccccccccccCchhHHHHhhhCC
Q 045316 138 AVAVKPEEAG--EEGNINNHICYVCHQSFRSVKSLYGHMRKHP 178 (568)
Q Consensus 138 ~~~l~~H~~~--h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~ 178 (568)
....+.-.+. ...+.. |.|.+|+|.|.+...|+.|+.+|.
T Consensus 339 rae~~ea~rsg~dss~gi-~~C~~C~KkFrRqAYLrKHqlthq 380 (500)
T KOG3993|consen 339 RAEVQEAERSGDDSSSGI-FSCHTCGKKFRRQAYLRKHQLTHQ 380 (500)
T ss_pred hhhhhhccccCCcccCce-eecHHhhhhhHHHHHHHHhHHhhh
Confidence 1111110000 112223 999999999999999999999986
No 19
>PHA00733 hypothetical protein
Probab=98.89 E-value=1.7e-09 Score=87.80 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=61.5
Q ss_pred cchhhHhHhhcchHHHHHH--HHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhh
Q 045316 60 AAAEADDRQFMEEDLLLQR--EQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKK 137 (568)
Q Consensus 60 ~~C~~C~k~f~~~~~L~~H--~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~ 137 (568)
..|.+|.+.|.....|..| ++.+.. . .+.++|.|+.||+.|.+...|..|++.|. .+
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~l~~~~~--~--~~~kPy~C~~Cgk~Fss~s~L~~H~r~h~--~~--------------- 99 (128)
T PHA00733 41 LIRAVVKTLIYNPQLLDESSYLYKLLT--S--KAVSPYVCPLCLMPFSSSVSLKQHIRYTE--HS--------------- 99 (128)
T ss_pred HHHHHHhhhccChhhhcchHHHHhhcc--c--CCCCCccCCCCCCcCCCHHHHHHHHhcCC--cC---------------
Confidence 4678888888887777776 322210 0 14678999999999999999999988662 23
Q ss_pred hhccchhhhhhcCCcCCcccccccccccCchhHHHHhhhC
Q 045316 138 AVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRKH 177 (568)
Q Consensus 138 ~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~H 177 (568)
|.|++|++.|.....|..|+...
T Consensus 100 -----------------~~C~~CgK~F~~~~sL~~H~~~~ 122 (128)
T PHA00733 100 -----------------KVCPVCGKEFRNTDSTLDHVCKK 122 (128)
T ss_pred -----------------ccCCCCCCccCCHHHHHHHHHHh
Confidence 99999999999999999998654
No 20
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.82 E-value=6.4e-10 Score=62.39 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.3
Q ss_pred hhhhhhhcCCCCCCccccccchhhh
Q 045316 421 ALGGHVASHNKNKNVKESSSASAAA 445 (568)
Q Consensus 421 ~L~~H~~~H~~~k~~~C~~C~~~f~ 445 (568)
+|.+||++|+|++||.|++|++.|.
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEES
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeC
Confidence 5889999999999999999998885
No 21
>PHA00616 hypothetical protein
Probab=98.65 E-value=6.3e-09 Score=64.79 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.6
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSS 440 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 440 (568)
||+|..||+.|..++.|.+|++.|+|+++|.|+.-
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~ 35 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF 35 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEE
Confidence 59999999999999999999999999999998653
No 22
>PHA00732 hypothetical protein
Probab=98.46 E-value=9.5e-08 Score=69.80 Aligned_cols=37 Identities=22% Similarity=0.266 Sum_probs=32.9
Q ss_pred cccccccccccCChhhhhhhhhc-CCCCCCccccccchhhh
Q 045316 406 TYSCLICNKSFDKHQALGGHVAS-HNKNKNVKESSSASAAA 445 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~k~~~C~~C~~~f~ 445 (568)
||.|+.||+.|.+...|+.|++. |+ ++.|+.||+.|.
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~ 38 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR 38 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC
Confidence 58999999999999999999985 65 468999999887
No 23
>PHA00616 hypothetical protein
Probab=98.41 E-value=9.3e-08 Score=59.64 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=27.5
Q ss_pred CccccccccccCCchhHHHHHHHhccccCCC
Q 045316 94 PRTCSECGKQFTSGKALGGHKRACLQKIKNG 124 (568)
Q Consensus 94 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~ 124 (568)
||+|..||+.|..++.|.+|++.|+|++++.
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~ 31 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLT 31 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccc
Confidence 6899999999999999999999999998843
No 24
>PHA00732 hypothetical protein
Probab=98.41 E-value=1.4e-07 Score=68.91 Aligned_cols=47 Identities=30% Similarity=0.433 Sum_probs=37.9
Q ss_pred CccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHH
Q 045316 94 PRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYG 172 (568)
Q Consensus 94 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~ 172 (568)
||.|..||+.|.+...|+.|++. |.+ +.|+.||+.|. .|..
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~~-----------------------------------~~C~~CgKsF~---~l~~ 42 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHTL-----------------------------------TKCPVCNKSYR---RLNQ 42 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccCC-----------------------------------CccCCCCCEeC---Chhh
Confidence 58899999999999999999984 432 77888999887 5788
Q ss_pred HhhhCC
Q 045316 173 HMRKHP 178 (568)
Q Consensus 173 H~~~H~ 178 (568)
|++++.
T Consensus 43 H~~~~~ 48 (79)
T PHA00732 43 HFYSQY 48 (79)
T ss_pred hhcccC
Confidence 886665
No 25
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=98.07 E-value=1.8e-06 Score=47.08 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=20.7
Q ss_pred ccccccccccCCchhHHHHHHHh
Q 045316 95 RTCSECGKQFTSGKALGGHKRAC 117 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~~H 117 (568)
|.|++|++.|.++..|.+||+.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 68999999999999999999875
No 26
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=98.06 E-value=1.4e-06 Score=47.59 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.6
Q ss_pred cccccccccccCchhHHHHhhhC
Q 045316 155 HICYVCHQSFRSVKSLYGHMRKH 177 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~L~~H~~~H 177 (568)
|+|++|++.|.++..|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 78999999999999999999875
No 27
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.98 E-value=7.2e-06 Score=55.65 Aligned_cols=50 Identities=28% Similarity=0.465 Sum_probs=36.2
Q ss_pred CccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHH
Q 045316 94 PRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYG 172 (568)
Q Consensus 94 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~ 172 (568)
.|.|++|++ ..+...|..|+.. |..+.. . +.|++|...+. .+|..
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~------------------------------~-v~CPiC~~~~~--~~l~~ 47 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESK------------------------------N-VVCPICSSRVT--DNLIR 47 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCC------------------------------C-ccCCCchhhhh--hHHHH
Confidence 488999999 5557889999885 433211 1 88999998765 38888
Q ss_pred HhhhC
Q 045316 173 HMRKH 177 (568)
Q Consensus 173 H~~~H 177 (568)
|+..+
T Consensus 48 Hl~~~ 52 (54)
T PF05605_consen 48 HLNSQ 52 (54)
T ss_pred HHHHh
Confidence 88764
No 28
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.81 E-value=9.1e-06 Score=64.11 Aligned_cols=73 Identities=21% Similarity=0.293 Sum_probs=21.5
Q ss_pred cccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhh
Q 045316 96 TCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMR 175 (568)
Q Consensus 96 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~ 175 (568)
+|.+|+..|.+...|..||...++-.. .....+.....+..+++.-... . +.|.+|++.|.+...|..||+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~-------~~~~~l~~~~~~~~~~~~~~~~-~-~~C~~C~~~f~s~~~l~~Hm~ 71 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDI-------PDQKYLVDPNRLLNYLRKKVKE-S-FRCPYCNKTFRSREALQEHMR 71 (100)
T ss_dssp -------------------------------------------------------S-S-EEBSSSS-EESSHHHHHHHHH
T ss_pred Ccccccccccccccccccccccccccc-------ccccccccccccccccccccCC-C-CCCCccCCCCcCHHHHHHHHc
Confidence 488899999998899999875444221 0111122223333333322222 3 999999999999999999998
Q ss_pred hC
Q 045316 176 KH 177 (568)
Q Consensus 176 ~H 177 (568)
.+
T Consensus 72 ~~ 73 (100)
T PF12756_consen 72 SK 73 (100)
T ss_dssp HT
T ss_pred Cc
Confidence 75
No 29
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.77 E-value=6e-06 Score=47.05 Aligned_cols=26 Identities=38% Similarity=0.717 Sum_probs=24.3
Q ss_pred ceeCCccccccCcccccccccccCcC
Q 045316 482 EHKCNICNKIFPTGQALGGHKRCHWT 507 (568)
Q Consensus 482 ~f~C~~C~k~F~~~~~L~~H~r~H~~ 507 (568)
||+|.+|++.|.+...|..|++.|..
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 69999999999999999999999954
No 30
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.75 E-value=1.5e-05 Score=71.86 Aligned_cols=69 Identities=20% Similarity=0.501 Sum_probs=49.4
Q ss_pred CCCcccccc--cccccCChhhhhhhhhc-CCCCCCcccc--ccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcC
Q 045316 403 TAQTYSCLI--CNKSFDKHQALGGHVAS-HNKNKNVKES--SSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGG 477 (568)
Q Consensus 403 ~~k~~~C~~--C~k~F~~~~~L~~H~~~-H~~~k~~~C~--~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H 477 (568)
++|||+|++ |+|.+.....|+.|+.- |-..+...-+ +=-..| -
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~~F--------------------------------~ 393 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIF--------------------------------S 393 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccccc--------------------------------c
Confidence 359999998 99999999999999853 5332221110 000111 2
Q ss_pred CCCCceeCCccccccCcccccccccc
Q 045316 478 GGSSEHKCNICNKIFPTGQALGGHKR 503 (568)
Q Consensus 478 ~~~k~f~C~~C~k~F~~~~~L~~H~r 503 (568)
...|||.|++|+|+|+....|+.|+.
T Consensus 394 ~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 394 AKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred ccCCceeccccchhhccCccceeccc
Confidence 34579999999999999999999964
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.72 E-value=1.9e-05 Score=43.55 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=19.6
Q ss_pred ccccccccccCCchhHHHHHHHhc
Q 045316 95 RTCSECGKQFTSGKALGGHKRACL 118 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~~H~ 118 (568)
|.|++|++.|.+...|+.|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 689999999999999999999874
No 32
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=97.72 E-value=3.4e-05 Score=52.34 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=40.7
Q ss_pred cchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhc
Q 045316 60 AAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACL 118 (568)
Q Consensus 60 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~ 118 (568)
+.|+.|++ ..+...|..|....+. ...+.+.|++|...+. .+|.+||+.++
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~-----~~~~~v~CPiC~~~~~--~~l~~Hl~~~H 53 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHR-----SESKNVVCPICSSRVT--DNLIRHLNSQH 53 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCc-----CCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence 57899999 4556889999887663 2456799999999766 49999999765
No 33
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.70 E-value=1.5e-05 Score=45.40 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=24.0
Q ss_pred cccccccccccCChhhhhhhhhcCCC
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNK 431 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~ 431 (568)
+|.|..|++.|.+...|..|++.|.+
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhcC
Confidence 58999999999999999999998864
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.68 E-value=1.1e-05 Score=44.60 Aligned_cols=24 Identities=38% Similarity=0.848 Sum_probs=20.1
Q ss_pred ccccccccccCChhhhhhhhhcCC
Q 045316 407 YSCLICNKSFDKHQALGGHVASHN 430 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~ 430 (568)
|.|++|++.|.+...|+.|+++|+
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999998763
No 35
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.64 E-value=1.7e-05 Score=71.57 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=48.9
Q ss_pred CCCCccccc--cccccCCchhHHHHHHH-hccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCc
Q 045316 91 LGLPRTCSE--CGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSV 167 (568)
Q Consensus 91 ~~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~ 167 (568)
++|||+|++ |.|.|++...|+.|+.- |...+..+-. -..--..| -...+| |+|++|+|+++..
T Consensus 346 d~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p-~p~~~~~F------------~~~~KP-YrCevC~KRYKNl 411 (423)
T COG5189 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENP-SPEKMNIF------------SAKDKP-YRCEVCDKRYKNL 411 (423)
T ss_pred cCceecCCCCCchhhhccccchhhhhhccccCcccCCCC-Cccccccc------------cccCCc-eeccccchhhccC
Confidence 469999997 99999999999999983 4332211000 00001111 233456 9999999999999
Q ss_pred hhHHHHhh
Q 045316 168 KSLYGHMR 175 (568)
Q Consensus 168 ~~L~~H~~ 175 (568)
..|+.|..
T Consensus 412 NGLKYHr~ 419 (423)
T COG5189 412 NGLKYHRK 419 (423)
T ss_pred ccceeccc
Confidence 99999974
No 36
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.45 E-value=3e-05 Score=61.15 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=22.1
Q ss_pred cccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCc
Q 045316 408 SCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNI 487 (568)
Q Consensus 408 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~ 487 (568)
+|.+|+..|.+...|..||...++...-.. ..+.... . +..+.+.- -...|.|.+
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~----~~l~~~~-------~-------------~~~~~~~~-~~~~~~C~~ 55 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQ----KYLVDPN-------R-------------LLNYLRKK-VKESFRCPY 55 (100)
T ss_dssp -------------------------------------------------------------------------SSEEBSS
T ss_pred Cccccccccccccccccccccccccccccc----ccccccc-------c-------------cccccccc-cCCCCCCCc
Confidence 599999999999999999976544321100 0001110 0 22222211 122799999
Q ss_pred cccccCcccccccccccC
Q 045316 488 CNKIFPTGQALGGHKRCH 505 (568)
Q Consensus 488 C~k~F~~~~~L~~H~r~H 505 (568)
|++.|.+...|..||+.+
T Consensus 56 C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 56 CNKTFRSREALQEHMRSK 73 (100)
T ss_dssp SS-EESSHHHHHHHHHHT
T ss_pred cCCCCcCHHHHHHHHcCc
Confidence 999999999999999976
No 37
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.37 E-value=6.7e-05 Score=47.79 Aligned_cols=32 Identities=25% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCCccccccccccCCchhHHHHHHHhccccC
Q 045316 91 LGLPRTCSECGKQFTSGKALGGHKRACLQKIK 122 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 122 (568)
.+.|-.|++|+..+....+|++|+.++++.+|
T Consensus 21 S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 21 SEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp TS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred cCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 68899999999999999999999998888766
No 38
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.18 E-value=0.00017 Score=40.44 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=22.3
Q ss_pred ccccccccccCChhhhhhhhhcCC
Q 045316 407 YSCLICNKSFDKHQALGGHVASHN 430 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~ 430 (568)
|.|..|++.|.....|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 689999999999999999999875
No 39
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=97.18 E-value=0.00061 Score=74.04 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=71.4
Q ss_pred ccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhh
Q 045316 57 PAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLI 135 (568)
Q Consensus 57 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f 135 (568)
.....|..|+..|.....+.-|+..-+ .-.+.|+|+.|+..|+....|..|||+ |..-.. .+|. .+
T Consensus 434 ~~l~e~~~~e~~~~s~r~~~~~t~~L~------S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~---~~c~----~g 500 (1406)
T KOG1146|consen 434 GTLVELTKAEPLLESKRSLEGQTVVLH------SFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQS---AYCK----AG 500 (1406)
T ss_pred Cccccccchhhhhhhhcccccceeeee------cccccccCCccchhhhhHHHhhhcccccccccch---hHhH----hc
Confidence 444467778888888888888877655 245899999999999999999999996 433221 2221 00
Q ss_pred hhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhh
Q 045316 136 KKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRK 176 (568)
Q Consensus 136 ~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~ 176 (568)
...-.+.+=...-.+.++ |.|..|..+|.++.+|-+||..
T Consensus 501 q~~~~~arg~~~~~~~~p-~~C~~C~~stttng~LsihlqS 540 (1406)
T KOG1146|consen 501 QNHPRLARGEVYRCPGKP-YPCRACNYSTTTNGNLSIHLQS 540 (1406)
T ss_pred cccccccccccccCCCCc-ccceeeeeeeecchHHHHHHHH
Confidence 000000000011123345 9999999999999999999965
No 40
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=97.17 E-value=0.00016 Score=46.10 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=24.5
Q ss_pred cCCCCcccccccccccCChhhhhhhhhcCCCCCC
Q 045316 401 MSTAQTYSCLICNKSFDKHQALGGHVASHNKNKN 434 (568)
Q Consensus 401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 434 (568)
+..+.|-.|++|+..+++..+|++|+.++++.||
T Consensus 19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~k~ 52 (54)
T PF09237_consen 19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFKKP 52 (54)
T ss_dssp CTTS--EE-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred hccCCCCCCCcchhhccchhhHHHHHHHHhcccC
Confidence 3456789999999999999999999988887775
No 41
>smart00355 ZnF_C2H2 zinc finger.
Probab=97.03 E-value=0.00045 Score=38.68 Aligned_cols=24 Identities=46% Similarity=0.754 Sum_probs=20.9
Q ss_pred ccccccccccCCchhHHHHHHHhc
Q 045316 95 RTCSECGKQFTSGKALGGHKRACL 118 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~~H~ 118 (568)
|.|..|++.|.+...|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 579999999999999999998774
No 42
>PRK04860 hypothetical protein; Provisional
Probab=96.87 E-value=0.00037 Score=58.94 Aligned_cols=38 Identities=11% Similarity=0.211 Sum_probs=34.3
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccchhhhcc
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAED 447 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~ 447 (568)
+|.|. |++ ....+++|.++|+|+++|.|..|+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 69998 998 888999999999999999999999887643
No 43
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.83 E-value=0.00034 Score=38.86 Aligned_cols=23 Identities=43% Similarity=0.829 Sum_probs=21.2
Q ss_pred ccccccccccCChhhhhhhhhcC
Q 045316 407 YSCLICNKSFDKHQALGGHVASH 429 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H 429 (568)
|.|.+|++.|.+...|+.|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 68999999999999999999864
No 44
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.70 E-value=0.00062 Score=37.77 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.3
Q ss_pred ccccccccccCCchhHHHHHHHh
Q 045316 95 RTCSECGKQFTSGKALGGHKRAC 117 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~~H 117 (568)
|.|.+|++.|.+...|..|++.+
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 67999999999999999999854
No 45
>PRK04860 hypothetical protein; Provisional
Probab=96.67 E-value=0.00082 Score=56.83 Aligned_cols=28 Identities=11% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHhcCCCCCceeCCccccccCcccc
Q 045316 470 LAAAAAGGGGSSEHKCNICNKIFPTGQA 497 (568)
Q Consensus 470 L~~H~~~H~~~k~f~C~~C~k~F~~~~~ 497 (568)
+++|.++|+|+++|.|..|++.|.....
T Consensus 131 ~rrH~ri~~g~~~YrC~~C~~~l~~~~~ 158 (160)
T PRK04860 131 VRRHNRVVRGEAVYRCRRCGETLVFKGE 158 (160)
T ss_pred HHHHHHHhcCCccEECCCCCceeEEecc
Confidence 8999999999999999999999986543
No 46
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.59 E-value=0.0014 Score=35.89 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=18.9
Q ss_pred ccccccccccCCchhHHHHHHHhcc
Q 045316 95 RTCSECGKQFTSGKALGGHKRACLQ 119 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~~H~~ 119 (568)
|+|+.|+.... +..|.+|++.|++
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 78999999888 8899999998753
No 47
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.46 E-value=0.0014 Score=37.07 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=20.8
Q ss_pred ccccccccccCChhhhhhhhhc
Q 045316 407 YSCLICNKSFDKHQALGGHVAS 428 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~ 428 (568)
|.|.+|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999975
No 48
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=96.36 E-value=0.034 Score=57.20 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=56.0
Q ss_pred CcccccccccccCChhhhhhhhh--cCCCC--CCcccc--ccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCC
Q 045316 405 QTYSCLICNKSFDKHQALGGHVA--SHNKN--KNVKES--SSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGG 478 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~--~H~~~--k~~~C~--~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~ 478 (568)
.++.|..|...|.....|.+|.+ .|+++ +|+.|+ .|++.|..-.. +..|..+|+
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~--------------------~~~~~~~~~ 347 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDA--------------------LKRHILLHT 347 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCcccccccc--------------------ccCCccccc
Confidence 46899999999999999999999 79999 888887 67777776665 777777777
Q ss_pred CCCceeCCc--cccccCcccc
Q 045316 479 GSSEHKCNI--CNKIFPTGQA 497 (568)
Q Consensus 479 ~~k~f~C~~--C~k~F~~~~~ 497 (568)
+.+++.|.. |.+.+.....
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~ 368 (467)
T COG5048 348 SISPAKEKLLNSSSKFSPLLN 368 (467)
T ss_pred CCCccccccccCccccccccC
Confidence 777777765 4444444433
No 49
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=96.33 E-value=0.0012 Score=37.29 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=21.3
Q ss_pred eeCCccccccCcccccccccccC
Q 045316 483 HKCNICNKIFPTGQALGGHKRCH 505 (568)
Q Consensus 483 f~C~~C~k~F~~~~~L~~H~r~H 505 (568)
|-|.+|++.|.+...|..|++.+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~sk 24 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKSK 24 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTSH
T ss_pred CCcccCCCCcCCHHHHHHHHccC
Confidence 78999999999999999999864
No 50
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.0098 Score=61.39 Aligned_cols=30 Identities=33% Similarity=0.525 Sum_probs=22.2
Q ss_pred cccccccccccCchhHHHHhh-hCCCCCccccCC
Q 045316 155 HICYVCHQSFRSVKSLYGHMR-KHPEREWRGVQP 187 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~C~~c 187 (568)
..|..| -.|.+...|+.||+ .|. .+.|.+|
T Consensus 116 ~~~~~c-~~~~s~~~Lk~H~~~~H~--~~~c~lC 146 (669)
T KOG2231|consen 116 KECLHC-TEFKSVENLKNHMRDQHK--LHLCSLC 146 (669)
T ss_pred CCCccc-cchhHHHHHHHHHHHhhh--hhccccc
Confidence 568888 77888999999984 463 5666666
No 51
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.06 E-value=0.0013 Score=36.01 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=18.8
Q ss_pred ccccccccccCChhhhhhhhhcCC
Q 045316 407 YSCLICNKSFDKHQALGGHVASHN 430 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~ 430 (568)
|+|+.|+.... +..|.+|++.|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H 23 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHH 23 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhC
Confidence 78999999998 999999998764
No 52
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.0072 Score=62.35 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=77.0
Q ss_pred chhhHhHhh---------------cchHHHHHHHHHhhccccCCCCCCCccccccc---ccc------CCchhHHHHHHH
Q 045316 61 AAEADDRQF---------------MEEDLLLQREQEQDQQDRGGVLGLPRTCSECG---KQF------TSGKALGGHKRA 116 (568)
Q Consensus 61 ~C~~C~k~f---------------~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~---k~F------~~~~~L~~H~~~ 116 (568)
.|..|++.| .+...|+.|++..| +.+.|.+|- +.| -++..|.+|++.
T Consensus 101 ~C~~C~~~~~~~~~~~~~~~c~~~~s~~~Lk~H~~~~H---------~~~~c~lC~~~~kif~~e~k~Yt~~el~~h~~~ 171 (669)
T KOG2231|consen 101 SCHICDRRFRALYNKKECLHCTEFKSVENLKNHMRDQH---------KLHLCSLCLQNLKIFINERKLYTRAELNLHLMF 171 (669)
T ss_pred hcCccccchhhhcccCCCccccchhHHHHHHHHHHHhh---------hhhccccccccceeeeeeeehehHHHHHHHHhc
Confidence 667777666 37888999997666 566666652 222 345778888874
Q ss_pred h-ccccCCC-CcccCCCchhhhhhhccchhhhhhcCCcCCccccccc------ccccCchhHHHHhhhCCCCCcccc--C
Q 045316 117 C-LQKIKNG-TTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCH------QSFRSVKSLYGHMRKHPEREWRGV--Q 186 (568)
Q Consensus 117 H-~~~~~~~-~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~------k~F~~~~~L~~H~~~H~~~~~~C~--~ 186 (568)
= .+++.+. -..|..|...|.....|.+|++.++ |.|.+|. .-|.....|..|.+.++ |.|+ +
T Consensus 172 gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h-----~~chfC~~~~~~neyy~~~~dLe~HfR~~H---flCE~~~ 243 (669)
T KOG2231|consen 172 GDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH-----EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH---FLCEEEF 243 (669)
T ss_pred CCCccccccCCccchhhhhhhccHHHHHHhhccce-----eheeecCcccccchhcccchHHHHHhhhcC---ccccccc
Confidence 2 2343332 3677888999999999999998866 7787774 46777778999988765 6665 5
Q ss_pred C
Q 045316 187 P 187 (568)
Q Consensus 187 c 187 (568)
|
T Consensus 244 C 244 (669)
T KOG2231|consen 244 C 244 (669)
T ss_pred c
Confidence 5
No 53
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=95.04 E-value=0.02 Score=54.25 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=50.2
Q ss_pred CccccccccccCCchhHHHHHHH--hccc-cCCCCcccCCCchhhhhhhccchh---hhhhcCCcCCcccccccccccCc
Q 045316 94 PRTCSECGKQFTSGKALGGHKRA--CLQK-IKNGTTHNNQNPRLIKKAVAVKPE---EAGEEGNINNHICYVCHQSFRSV 167 (568)
Q Consensus 94 ~~~C~~C~k~F~~~~~L~~H~~~--H~~~-~~~~~~~c~~c~~~f~~~~~l~~H---~~~h~~~~~~~~C~~C~k~F~~~ 167 (568)
.|.|.-|...|.+...-+.|+++ |.-. |.---...++-...|..+.....- ...-.+..+ +.|.+|.+.|...
T Consensus 3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~-~~c~~c~k~~~s~ 81 (390)
T KOG2785|consen 3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESV-VYCEACNKSFASP 81 (390)
T ss_pred cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccc-eehHHhhccccCh
Confidence 58999999999999999999985 4311 100001112333344332111110 011233344 9999999999999
Q ss_pred hhHHHHhhh
Q 045316 168 KSLYGHMRK 176 (568)
Q Consensus 168 ~~L~~H~~~ 176 (568)
.....|+..
T Consensus 82 ~a~~~hl~S 90 (390)
T KOG2785|consen 82 KAHENHLKS 90 (390)
T ss_pred hhHHHHHHH
Confidence 999999854
No 54
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.82 E-value=0.013 Score=32.21 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.4
Q ss_pred ccccccccccCChhhhhhhhhc
Q 045316 407 YSCLICNKSFDKHQALGGHVAS 428 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~ 428 (568)
..|+.||+.| ....|.+|+.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 6799999999 88899999764
No 55
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=94.62 E-value=0.024 Score=31.18 Aligned_cols=21 Identities=29% Similarity=0.746 Sum_probs=16.8
Q ss_pred ccccccccccCCchhHHHHHHH
Q 045316 95 RTCSECGKQFTSGKALGGHKRA 116 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~~ 116 (568)
..|+.||+.| ....|.+|+.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4688899988 77888888763
No 56
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=94.15 E-value=0.012 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.617 Sum_probs=21.3
Q ss_pred ccccccccccCChhhhhhh-hhcCC
Q 045316 407 YSCLICNKSFDKHQALGGH-VASHN 430 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H-~~~H~ 430 (568)
|+|.+|.|...+--.|..| |.+|.
T Consensus 35 fkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 35 FKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred ceeeeehhhhccCCCceeehhhhhh
Confidence 9999999998888899999 78885
No 57
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=94.06 E-value=0.017 Score=50.44 Aligned_cols=47 Identities=32% Similarity=0.523 Sum_probs=37.2
Q ss_pred cccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHH-h
Q 045316 96 TCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGH-M 174 (568)
Q Consensus 96 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H-~ 174 (568)
-|-+|++.|....-|..|++.-+ |+|.+|.|...+--.|..| |
T Consensus 12 wcwycnrefddekiliqhqkakh------------------------------------fkchichkkl~sgpglsihcm 55 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAKH------------------------------------FKCHICHKKLFSGPGLSIHCM 55 (341)
T ss_pred eeeecccccchhhhhhhhhhhcc------------------------------------ceeeeehhhhccCCCceeehh
Confidence 47788888888888888877321 9999999988888888888 6
Q ss_pred hhCC
Q 045316 175 RKHP 178 (568)
Q Consensus 175 ~~H~ 178 (568)
.+|.
T Consensus 56 qvhk 59 (341)
T KOG2893|consen 56 QVHK 59 (341)
T ss_pred hhhh
Confidence 7776
No 58
>KOG1146 consensus Homeobox protein [General function prediction only]
Probab=93.99 E-value=0.017 Score=63.30 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=79.3
Q ss_pred CCCccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCCCcccCCCch
Q 045316 54 TKPPAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPR 133 (568)
Q Consensus 54 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~ 133 (568)
......+.|..|++.|...-.+. |+- ...+|.|..|...|.....|..|.+ .|.+
T Consensus 1255 ~~~sGe~~c~~~~~~~~~~~~~~-~l~----------~~~~~~~~~~~~~~~~~~~l~~~~~--------------k~~~ 1309 (1406)
T KOG1146|consen 1255 LPASGEGECGAVDELLTPSFGIS-TLD----------VTHRYLCRQCKMAFDGEAPLTAHQR--------------KFCF 1309 (1406)
T ss_pred CcCCCcchhhhccccccCcccee-ecc----------cchhHHHHHHHhhhcchhHHHHHHH--------------HHHh
Confidence 33456678999999998887777 654 5678999999999999999999994 4556
Q ss_pred hhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHhhh
Q 045316 134 LIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHMRK 176 (568)
Q Consensus 134 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~ 176 (568)
.+.....+..|+..+..... | |..|...|.....|..||++
T Consensus 1310 ~~~~~~~~~~~~l~~~d~~~-~-c~~c~~~~~~~~alqihm~~ 1350 (1406)
T KOG1146|consen 1310 AGRGSGGSMPPPLRVPDCTY-H-CLACEVLLSGREALQIHMRS 1350 (1406)
T ss_pred ccCccccCCCCcccCccccc-c-chHHHhhcchhHHHHHHHHH
Confidence 67777777777777777776 7 99999999999999999986
No 59
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=93.90 E-value=0.094 Score=53.92 Aligned_cols=156 Identities=13% Similarity=0.018 Sum_probs=96.4
Q ss_pred ccccccccccccccccccccccc--cccCC--Cccccc--cccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCC
Q 045316 286 AQLSADDCNDNKEQRGTFDHHRV--VSSVD--SGYGVL--KIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNS 359 (568)
Q Consensus 286 ~~~~C~~C~~~F~~~~~L~~H~~--~h~~~--~~~~c~--~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (568)
..+.|..|...|.....|..|.+ .|.++ +++.|. .|++.|.+...+..+.........................
T Consensus 288 ~~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (467)
T COG5048 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLL 367 (467)
T ss_pred cCCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCCCccccccccCcccccccc
Confidence 46889999999999999999999 89999 999999 8999999998877776665544322222111111110000
Q ss_pred cch--hhHhhhhhHhhhccccccchhhcccccCCCCCcccccccCCCC--cccccccccccCChhhhhhhhhcCCCCCCc
Q 045316 360 EDM--WTKKQQKKNKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQ--TYSCLICNKSFDKHQALGGHVASHNKNKNV 435 (568)
Q Consensus 360 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k--~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~ 435 (568)
... .....................+.........+..+...|...+ .+.|..|.+.|.....|..|++.|....++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (467)
T COG5048 368 NNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPL 447 (467)
T ss_pred CCCCccchhhccCccCCccccccccchhhhhccccccccccccccccCCcCCCCCcchhhccCcccccccccccccCCce
Confidence 000 0000000000011111112223333344444555665665544 577888999999999999999999988887
Q ss_pred cccccc
Q 045316 436 KESSSA 441 (568)
Q Consensus 436 ~C~~C~ 441 (568)
.|..++
T Consensus 448 ~~~~~~ 453 (467)
T COG5048 448 LCSILK 453 (467)
T ss_pred eecccc
Confidence 774443
No 60
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=93.85 E-value=0.031 Score=33.83 Aligned_cols=23 Identities=22% Similarity=0.664 Sum_probs=20.8
Q ss_pred cccccccccccCChhhhhhhhhc
Q 045316 406 TYSCLICNKSFDKHQALGGHVAS 428 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~ 428 (568)
+|.|++|++.|.+...+..|++.
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred CeEccccCCccCCHHHHHHHHCh
Confidence 58899999999999999999864
No 61
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.68 E-value=0.29 Score=45.55 Aligned_cols=118 Identities=21% Similarity=0.224 Sum_probs=71.0
Q ss_pred hHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccc---cccCC------chhHHHHHHHhccccCC-CCcccCCCch
Q 045316 64 ADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECG---KQFTS------GKALGGHKRACLQKIKN-GTTHNNQNPR 133 (568)
Q Consensus 64 ~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~---k~F~~------~~~L~~H~~~H~~~~~~-~~~~c~~c~~ 133 (568)
.|.........|..|.+..| ..+.|.+|- +.|.. +..|..|...=..+..| +-..|..|..
T Consensus 158 kc~~~C~~~k~lk~H~K~~H---------~~~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~FC~~ 228 (493)
T COG5236 158 KCHRRCGSLKELKKHYKAQH---------GFVLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKI 228 (493)
T ss_pred hhhhhhhhHHHHHHHHHhhc---------CcEEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhhhccc
Confidence 47777777888888888766 567777773 44543 34555555432222222 2244555667
Q ss_pred hhhhhhccchhhhhhcCCcCCcccccccc-------cccCchhHHHHhhhCCCCCccccC-----------CCchhHHHH
Q 045316 134 LIKKAVAVKPEEAGEEGNINNHICYVCHQ-------SFRSVKSLYGHMRKHPEREWRGVQ-----------PPKHYLLNH 195 (568)
Q Consensus 134 ~f~~~~~l~~H~~~h~~~~~~~~C~~C~k-------~F~~~~~L~~H~~~H~~~~~~C~~-----------c~~~~l~~H 195 (568)
.|.....|..|++..+ -+|-+|++ -|+.-..|..|.+.-+ |.|.| .....|..|
T Consensus 229 ~FYdDDEL~~HcR~~H-----E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h---y~ct~qtc~~~k~~vf~~~~el~~h 300 (493)
T COG5236 229 YFYDDDELRRHCRLRH-----EACHICDMVGPIRYQYFKSYEDLEAHFRNAH---YCCTFQTCRVGKCYVFPYHTELLEH 300 (493)
T ss_pred eecChHHHHHHHHhhh-----hhhhhhhccCccchhhhhCHHHHHHHhhcCc---eEEEEEEEecCcEEEeccHHHHHHH
Confidence 7888888888877644 34666665 3666777777775422 55533 234557777
Q ss_pred Hhh
Q 045316 196 RRQ 198 (568)
Q Consensus 196 ~~~ 198 (568)
+-.
T Consensus 301 ~~~ 303 (493)
T COG5236 301 LTR 303 (493)
T ss_pred HHH
Confidence 543
No 62
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=93.57 E-value=0.049 Score=50.49 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=45.8
Q ss_pred CCCCccccccccccC-CchhHHHHHH-Hhccc--cCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccC
Q 045316 91 LGLPRTCSECGKQFT-SGKALGGHKR-ACLQK--IKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRS 166 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~-~~~~L~~H~~-~H~~~--~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~ 166 (568)
.....+|-+|...+. .++.+..|+- .|.-. .|- ..+| ...|..|++.-... ++|-+|.+.|..
T Consensus 141 t~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpD--------niVy--vnelLehLkekL~r---~~CLyCekifrd 207 (423)
T KOG2482|consen 141 TIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPD--------NIVY--VNELLEHLKEKLER---LRCLYCEKIFRD 207 (423)
T ss_pred CeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCc--------ceee--HHHHHHHHHHHHhh---heeeeeccccCC
Confidence 345678999988775 5567777776 34321 110 1111 12233333332222 999999999999
Q ss_pred chhHHHHhhh
Q 045316 167 VKSLYGHMRK 176 (568)
Q Consensus 167 ~~~L~~H~~~ 176 (568)
+..|+.||+.
T Consensus 208 kntLkeHMrk 217 (423)
T KOG2482|consen 208 KNTLKEHMRK 217 (423)
T ss_pred cHHHHHHHHh
Confidence 9999999975
No 63
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=93.42 E-value=0.045 Score=33.07 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCccccccccccCCchhHHHHHHH
Q 045316 93 LPRTCSECGKQFTSGKALGGHKRA 116 (568)
Q Consensus 93 ~~~~C~~C~k~F~~~~~L~~H~~~ 116 (568)
.+|.|++|++.|.+...|..|++.
T Consensus 2 ~~~~C~~C~~~~~~~~~~~~H~~g 25 (35)
T smart00451 2 GGFYCKLCNVTFTDEISVEAHLKG 25 (35)
T ss_pred cCeEccccCCccCCHHHHHHHHCh
Confidence 368899999999999999999984
No 64
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=92.69 E-value=0.063 Score=31.90 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=19.5
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
|.|.+||..+.... .++.|++||.
T Consensus 2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE------------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc------------CCCcCcCCCC
Confidence 88999998876543 7899999975
No 65
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=91.58 E-value=0.083 Score=34.49 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=25.0
Q ss_pred CCCCCccccccccccCCchhHHHHHHHh
Q 045316 90 VLGLPRTCSECGKQFTSGKALGGHKRAC 117 (568)
Q Consensus 90 ~~~~~~~C~~C~k~F~~~~~L~~H~~~H 117 (568)
.|+-.+.|+.||+.|....++.+|+..-
T Consensus 13 DGE~~lrCPRC~~~FR~~K~Y~RHVNKa 40 (65)
T COG4049 13 DGEEFLRCPRCGMVFRRRKDYIRHVNKA 40 (65)
T ss_pred CCceeeeCCchhHHHHHhHHHHHHhhHH
Confidence 4788899999999999999999999853
No 66
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=91.49 E-value=0.078 Score=31.51 Aligned_cols=11 Identities=18% Similarity=0.628 Sum_probs=9.2
Q ss_pred CceeCCccccc
Q 045316 481 SEHKCNICNKI 491 (568)
Q Consensus 481 k~f~C~~C~k~ 491 (568)
.++.|++||..
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 58999999863
No 67
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.63 E-value=0.23 Score=46.19 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCccccc--cccccCCchhHHHHHHHhccccCCCCcccCCC---chhhh------hhhccchhhhhhcCCcC---Ccccc
Q 045316 93 LPRTCSE--CGKQFTSGKALGGHKRACLQKIKNGTTHNNQN---PRLIK------KAVAVKPEEAGEEGNIN---NHICY 158 (568)
Q Consensus 93 ~~~~C~~--C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c---~~~f~------~~~~l~~H~~~h~~~~~---~~~C~ 158 (568)
-.|.|+. |..+......|+.|.+.-++. .+|..| .+.|. +...|..|...-..+.. --.|.
T Consensus 150 L~F~CP~skc~~~C~~~k~lk~H~K~~H~~-----~~C~~C~~nKk~F~~E~~lF~~~~Lr~H~~~G~~e~GFKGHP~C~ 224 (493)
T COG5236 150 LSFKCPKSKCHRRCGSLKELKKHYKAQHGF-----VLCSECIGNKKDFWNEIRLFRSSTLRDHKNGGLEEEGFKGHPLCI 224 (493)
T ss_pred HHhcCCchhhhhhhhhHHHHHHHHHhhcCc-----EEhHhhhcCcccCccceeeeecccccccccCCccccCcCCCchhh
Confidence 3588986 888888889999999975543 444444 34444 44677777665433322 12599
Q ss_pred cccccccCchhHHHHhhhCCCCCcccc
Q 045316 159 VCHQSFRSVKSLYGHMRKHPEREWRGV 185 (568)
Q Consensus 159 ~C~k~F~~~~~L~~H~~~H~~~~~~C~ 185 (568)
+|...|-.-..|.+|+|.-+++-|-|.
T Consensus 225 FC~~~FYdDDEL~~HcR~~HE~ChICD 251 (493)
T COG5236 225 FCKIYFYDDDELRRHCRLRHEACHICD 251 (493)
T ss_pred hccceecChHHHHHHHHhhhhhhhhhh
Confidence 999999999999999998666655554
No 68
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=89.70 E-value=0.13 Score=30.70 Aligned_cols=10 Identities=40% Similarity=1.009 Sum_probs=8.1
Q ss_pred CceeCCcccc
Q 045316 481 SEHKCNICNK 490 (568)
Q Consensus 481 k~f~C~~C~k 490 (568)
.|..|++||.
T Consensus 17 ~p~~CP~Cg~ 26 (34)
T cd00729 17 APEKCPICGA 26 (34)
T ss_pred CCCcCcCCCC
Confidence 4788999986
No 69
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.93 E-value=0.14 Score=46.25 Aligned_cols=44 Identities=18% Similarity=0.346 Sum_probs=33.9
Q ss_pred CcccccccccccCChhhhhhhhhc---CC-------CCCC-----ccccccchhhhccC
Q 045316 405 QTYSCLICNKSFDKHQALGGHVAS---HN-------KNKN-----VKESSSASAAAEDS 448 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~---H~-------~~k~-----~~C~~C~~~f~~~~ 448 (568)
+.+.|++|++.|..+.-+....|+ .+ +..| ..||.||++|....
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~ 62 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEED 62 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccccc
Confidence 568999999999999888877754 22 3334 38999999987664
No 70
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.93 E-value=0.27 Score=42.20 Aligned_cols=89 Identities=22% Similarity=0.316 Sum_probs=64.6
Q ss_pred ccccchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHH-hccccCCCCcccCCCchhh
Q 045316 57 PAAAAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLI 135 (568)
Q Consensus 57 ~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f 135 (568)
.+.|+-..|-+.|.....+..|...-| .-.|.+|.+.|.+...|..|+.- |.. .|
T Consensus 79 ~~~cqvagc~~~~d~lD~~E~hY~~~h----------~~sCs~C~r~~Pt~hLLd~HI~E~HDs--------------~F 134 (253)
T KOG4173|consen 79 AFACQVAGCCQVFDALDDYEHHYHTLH----------GNSCSFCKRAFPTGHLLDAHILEWHDS--------------LF 134 (253)
T ss_pred cccccccchHHHHhhhhhHHHhhhhcc----------cchhHHHHHhCCchhhhhHHHHHHHHH--------------HH
Confidence 445555569999999998988876444 34799999999999999999984 421 11
Q ss_pred hhhhccchhhhhhcCCcCCcccc--cccccccCchhHHHHh-hhCC
Q 045316 136 KKAVAVKPEEAGEEGNINNHICY--VCHQSFRSVKSLYGHM-RKHP 178 (568)
Q Consensus 136 ~~~~~l~~H~~~h~~~~~~~~C~--~C~k~F~~~~~L~~H~-~~H~ 178 (568)
.- .+-.|... |.|- -|+..|.+....+.|| ++|.
T Consensus 135 qa--------~veRG~dM-y~ClvEgCt~KFkT~r~RkdH~I~~Hk 171 (253)
T KOG4173|consen 135 QA--------LVERGQDM-YQCLVEGCTEKFKTSRDRKDHMIRMHK 171 (253)
T ss_pred HH--------HHHcCccH-HHHHHHhhhhhhhhhhhhhhHHHHhcc
Confidence 11 12233333 9995 4999999999999998 4564
No 71
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=88.18 E-value=0.25 Score=44.10 Aligned_cols=50 Identities=12% Similarity=0.231 Sum_probs=40.4
Q ss_pred ccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCcccccccccccCcC
Q 045316 435 VKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPTGQALGGHKRCHWT 507 (568)
Q Consensus 435 ~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H~~ 507 (568)
|.|.+||-+.+.-. |.+||..-.+ .-|.|-.|++.|.. ...+.|...=+.
T Consensus 4 FtCnvCgEsvKKp~---------------------vekH~srCrn-~~fSCIDC~k~F~~-~sYknH~kCITE 53 (276)
T KOG2186|consen 4 FTCNVCGESVKKPQ---------------------VEKHMSRCRN-AYFSCIDCGKTFER-VSYKNHTKCITE 53 (276)
T ss_pred Eehhhhhhhccccc---------------------hHHHHHhccC-CeeEEeeccccccc-chhhhhhhhcch
Confidence 78888888766443 8889877777 77999999999999 888999876543
No 72
>KOG2482 consensus Predicted C2H2-type Zn-finger protein [Transcription]
Probab=87.36 E-value=0.58 Score=43.70 Aligned_cols=123 Identities=14% Similarity=0.105 Sum_probs=71.3
Q ss_pred CccccchhhHhHhhc-chHHHHHHHHHhhccccCCCC---------------CCCccccccccccCCchhHHHHHHH--h
Q 045316 56 PPAAAAAEADDRQFM-EEDLLLQREQEQDQQDRGGVL---------------GLPRTCSECGKQFTSGKALGGHKRA--C 117 (568)
Q Consensus 56 ~~~~~~C~~C~k~f~-~~~~L~~H~~~h~~~~~~~~~---------------~~~~~C~~C~k~F~~~~~L~~H~~~--H 117 (568)
..+.-+|-.|...+. +++....|+-..|....|-+. -..+.|-+|.|.|+.+..|+.|||. |
T Consensus 141 t~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdkntLkeHMrkK~H 220 (423)
T KOG2482|consen 141 TIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDKNTLKEHMRKKRH 220 (423)
T ss_pred CeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCcHHHHHHHHhccC
Confidence 355667888877664 466777776654433333221 2358999999999999999999994 6
Q ss_pred ccccC----CCCccc-C--CCchhhhh-hhccchhhh----hh---------cCCcC-CcccccccccccCchhHHHHhh
Q 045316 118 LQKIK----NGTTHN-N--QNPRLIKK-AVAVKPEEA----GE---------EGNIN-NHICYVCHQSFRSVKSLYGHMR 175 (568)
Q Consensus 118 ~~~~~----~~~~~c-~--~c~~~f~~-~~~l~~H~~----~h---------~~~~~-~~~C~~C~k~F~~~~~L~~H~~ 175 (568)
..-.| |.+.+- + .-++.+.- .....+-.. .+ .+..+ .-+|-+|....-+...|..||+
T Consensus 221 rrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~a~a~~v~CLfC~~~~en~~~l~eHmk 300 (423)
T KOG2482|consen 221 RRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDDAEALSVVCLFCTNFYENPVFLFEHMK 300 (423)
T ss_pred cccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCCCCccceEEEeeccchhhHHHHHHHHH
Confidence 55444 222111 0 11111111 011100000 00 01111 1589999999999999999997
Q ss_pred h-CC
Q 045316 176 K-HP 178 (568)
Q Consensus 176 ~-H~ 178 (568)
+ |.
T Consensus 301 ~vHe 304 (423)
T KOG2482|consen 301 IVHE 304 (423)
T ss_pred HHHH
Confidence 5 54
No 73
>PHA00626 hypothetical protein
Probab=86.59 E-value=0.43 Score=31.47 Aligned_cols=16 Identities=13% Similarity=0.171 Sum_probs=13.4
Q ss_pred CceeCCccccccCccc
Q 045316 481 SEHKCNICNKIFPTGQ 496 (568)
Q Consensus 481 k~f~C~~C~k~F~~~~ 496 (568)
..|+|+.||..|+.-.
T Consensus 22 nrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 22 DDYVCCDCGYNDSKDA 37 (59)
T ss_pred cceEcCCCCCeechhh
Confidence 4899999999998643
No 74
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=86.52 E-value=0.34 Score=41.12 Aligned_cols=15 Identities=27% Similarity=0.643 Sum_probs=11.6
Q ss_pred cCCCCCceeCCcccc
Q 045316 476 GGGGSSEHKCNICNK 490 (568)
Q Consensus 476 ~H~~~k~f~C~~C~k 490 (568)
+|-|+-|-+|++||-
T Consensus 143 ~~~ge~P~~CPiCga 157 (166)
T COG1592 143 THEGEAPEVCPICGA 157 (166)
T ss_pred cccCCCCCcCCCCCC
Confidence 345567999999993
No 75
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=83.81 E-value=0.66 Score=25.73 Aligned_cols=10 Identities=30% Similarity=0.587 Sum_probs=6.8
Q ss_pred eCCccccccC
Q 045316 484 KCNICNKIFP 493 (568)
Q Consensus 484 ~C~~C~k~F~ 493 (568)
.|+.||..|.
T Consensus 16 ~Cp~CG~~F~ 25 (26)
T PF10571_consen 16 FCPHCGYDFE 25 (26)
T ss_pred cCCCCCCCCc
Confidence 5777777764
No 76
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=82.77 E-value=0.71 Score=36.23 Aligned_cols=29 Identities=21% Similarity=0.495 Sum_probs=20.4
Q ss_pred chhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCc
Q 045316 61 AAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSG 107 (568)
Q Consensus 61 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~ 107 (568)
.|..||+.|.-. +..|-.|++||..|.-.
T Consensus 11 ~Cp~CG~kFYDL------------------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 11 TCPSCGAKFYDL------------------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cCCCCcchhccC------------------CCCCccCCCCCCccCcc
Confidence 677788777653 34677788888777655
No 77
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=82.31 E-value=0.34 Score=31.76 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=23.9
Q ss_pred cCCCCcccccccccccCChhhhhhhhhc
Q 045316 401 MSTAQTYSCLICNKSFDKHQALGGHVAS 428 (568)
Q Consensus 401 h~~~k~~~C~~C~k~F~~~~~L~~H~~~ 428 (568)
..|+--+.|+-||+.|.......+|...
T Consensus 12 RDGE~~lrCPRC~~~FR~~K~Y~RHVNK 39 (65)
T COG4049 12 RDGEEFLRCPRCGMVFRRRKDYIRHVNK 39 (65)
T ss_pred cCCceeeeCCchhHHHHHhHHHHHHhhH
Confidence 3466679999999999999999999753
No 78
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=82.27 E-value=0.51 Score=34.54 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=11.6
Q ss_pred ceeCCccccccCc
Q 045316 482 EHKCNICNKIFPT 494 (568)
Q Consensus 482 ~f~C~~C~k~F~~ 494 (568)
.+.|..||..|.-
T Consensus 53 IW~C~kCg~~fAG 65 (89)
T COG1997 53 IWKCRKCGAKFAG 65 (89)
T ss_pred eEEcCCCCCeecc
Confidence 8999999999973
No 79
>KOG4173 consensus Alpha-SNAP protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.09 E-value=0.27 Score=42.18 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=52.9
Q ss_pred Ccccccc--cccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHH-----HhcC
Q 045316 405 QTYSCLI--CNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAA-----AAGG 477 (568)
Q Consensus 405 k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H-----~~~H 477 (568)
..|.|++ |-..|........|..+-+|. .|.+|.+.|. +...|..|+ +..| ..+-
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~~---sCs~C~r~~P-------t~hLLd~HI--------~E~HDs~Fqa~ve 139 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHGN---SCSFCKRAFP-------TGHLLDAHI--------LEWHDSLFQALVE 139 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhcccc---hhHHHHHhCC-------chhhhhHHH--------HHHHHHHHHHHHH
Confidence 3577877 778888877777776443322 3544444444 333444444 3333 1233
Q ss_pred CCCCceeCCc--cccccCccccccccc-ccC
Q 045316 478 GGSSEHKCNI--CNKIFPTGQALGGHK-RCH 505 (568)
Q Consensus 478 ~~~k~f~C~~--C~k~F~~~~~L~~H~-r~H 505 (568)
.|.--|+|-+ |+-.|.+...-+.|| ++|
T Consensus 140 RG~dMy~ClvEgCt~KFkT~r~RkdH~I~~H 170 (253)
T KOG4173|consen 140 RGQDMYQCLVEGCTEKFKTSRDRKDHMIRMH 170 (253)
T ss_pred cCccHHHHHHHhhhhhhhhhhhhhhHHHHhc
Confidence 4566799965 999999999999994 777
No 80
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=80.54 E-value=0.96 Score=38.44 Aligned_cols=23 Identities=9% Similarity=0.271 Sum_probs=20.0
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccc
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSA 441 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~ 441 (568)
.|.|++||..+ -|+-|-+||+||
T Consensus 134 ~~vC~vCGy~~-------------~ge~P~~CPiCg 156 (166)
T COG1592 134 VWVCPVCGYTH-------------EGEAPEVCPICG 156 (166)
T ss_pred EEEcCCCCCcc-------------cCCCCCcCCCCC
Confidence 59999999864 578999999998
No 81
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=80.47 E-value=1.1 Score=28.78 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=16.8
Q ss_pred CCCCccccccccccCCc----hhHHHHHH
Q 045316 91 LGLPRTCSECGKQFTSG----KALGGHKR 115 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~~~----~~L~~H~~ 115 (568)
+.....|.+|++.+... +.|.+|++
T Consensus 13 ~~~~a~C~~C~~~~~~~~~~ts~l~~HL~ 41 (45)
T PF02892_consen 13 DKKKAKCKYCGKVIKYSSGGTSNLKRHLK 41 (45)
T ss_dssp CSS-EEETTTTEE-----SSTHHHHHHHH
T ss_pred CcCeEEeCCCCeEEeeCCCcHHHHHHhhh
Confidence 46778899999998875 78999985
No 82
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=80.40 E-value=0.12 Score=53.26 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=26.1
Q ss_pred CceeCCccccccCcccccccccccCcCCC
Q 045316 481 SEHKCNICNKIFPTGQALGGHKRCHWTGP 509 (568)
Q Consensus 481 k~f~C~~C~k~F~~~~~L~~H~r~H~~~~ 509 (568)
-.|.|..|+|.|.....++.||++|.-.+
T Consensus 791 giFpCreC~kvF~KiKSrNAHMK~Hr~q~ 819 (907)
T KOG4167|consen 791 GIFPCRECGKVFFKIKSRNAHMKTHRQQE 819 (907)
T ss_pred ceeehHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 36999999999999999999999996554
No 83
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.39 E-value=0.41 Score=43.25 Aligned_cols=24 Identities=38% Similarity=0.685 Sum_probs=19.2
Q ss_pred CCCccccccccccCCchhHHHHHH
Q 045316 92 GLPRTCSECGKQFTSGKALGGHKR 115 (568)
Q Consensus 92 ~~~~~C~~C~k~F~~~~~L~~H~~ 115 (568)
.+.+.|++|++.|.++.-+....+
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r 26 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIR 26 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCce
Confidence 477899999999998876666555
No 84
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=80.32 E-value=0.9 Score=29.20 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=17.2
Q ss_pred CCcccccccccccCCh----hhhhhhh-hcC
Q 045316 404 AQTYSCLICNKSFDKH----QALGGHV-ASH 429 (568)
Q Consensus 404 ~k~~~C~~C~k~F~~~----~~L~~H~-~~H 429 (568)
.....|.+|++.+... ++|.+|+ +.|
T Consensus 14 ~~~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 14 KKKAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp SS-EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred cCeEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 4568899999999885 8999998 444
No 85
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=80.05 E-value=0.88 Score=30.08 Aligned_cols=24 Identities=25% Similarity=0.571 Sum_probs=20.3
Q ss_pred ccccccccccCCh-----hhhhhhhh-cCC
Q 045316 407 YSCLICNKSFDKH-----QALGGHVA-SHN 430 (568)
Q Consensus 407 ~~C~~C~k~F~~~-----~~L~~H~~-~H~ 430 (568)
-.|.+|++.+... ++|.+|++ +|.
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 5799999999876 69999998 564
No 86
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.00 E-value=3.2 Score=32.54 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=54.9
Q ss_pred CCCccccccccccCCchhHHHHHHHhccccCC---------CCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccc
Q 045316 92 GLPRTCSECGKQFTSGKALGGHKRACLQKIKN---------GTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQ 162 (568)
Q Consensus 92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~---------~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k 162 (568)
+-|-.|++||........|.|-..-=-.-++| .-..|--|...|........ ..-..... |+|+.|..
T Consensus 13 ~LP~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~~~-y~C~~C~~ 89 (112)
T TIGR00622 13 ELPVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDSHR-YVCAVCKN 89 (112)
T ss_pred CCCCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccccc-eeCCCCCC
Confidence 46888999999999888888753211111111 22345566776654321110 00111223 99999999
Q ss_pred cccCchhHHHHhhhCCCCCccccCCC
Q 045316 163 SFRSVKSLYGHMRKHPEREWRGVQPP 188 (568)
Q Consensus 163 ~F~~~~~L~~H~~~H~~~~~~C~~c~ 188 (568)
.|=-.-.+..|...|. |+.|.
T Consensus 90 ~FC~dCD~fiHe~Lh~-----CPGC~ 110 (112)
T TIGR00622 90 VFCVDCDVFVHESLHC-----CPGCI 110 (112)
T ss_pred ccccccchhhhhhccC-----CcCCC
Confidence 9999999999988885 55553
No 87
>PF15269 zf-C2H2_7: Zinc-finger
Probab=79.85 E-value=1.6 Score=27.26 Aligned_cols=22 Identities=23% Similarity=0.582 Sum_probs=20.2
Q ss_pred cccccccccccCchhHHHHhhh
Q 045316 155 HICYVCHQSFRSVKSLYGHMRK 176 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~L~~H~~~ 176 (568)
|+|-.|..+..-++.|..||+.
T Consensus 21 ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 21 YKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ceeecCCcccchHHHHHHHHHH
Confidence 8999999999999999999965
No 88
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.59 E-value=2.5 Score=33.13 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=51.1
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCc------------cccccchhhhccCchhhhhhhhhcccccccchHHHHHH
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNV------------KESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAA 473 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~------------~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H 473 (568)
|-.|++||-+....-+|.|-..-=-..++| .|--|...|..... . .
T Consensus 15 P~~CpiCgLtLVss~HLARSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~-------~-------------~-- 72 (112)
T TIGR00622 15 PVECPICGLTLILSTHLARSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPV-------S-------------P-- 72 (112)
T ss_pred CCcCCcCCCEEeccchHHHhhhccCCCcccccccccccCCCCcccCcCCCCCCccc-------c-------------c--
Confidence 789999999999988888753211122222 36666666654321 0 0
Q ss_pred HhcCCCCCceeCCccccccCcccccccccccC
Q 045316 474 AAGGGGSSEHKCNICNKIFPTGQALGGHKRCH 505 (568)
Q Consensus 474 ~~~H~~~k~f~C~~C~k~F~~~~~L~~H~r~H 505 (568)
...-+....|+|+.|...|=-.-..-.|...|
T Consensus 73 ~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh 104 (112)
T TIGR00622 73 FDELKDSHRYVCAVCKNVFCVDCDVFVHESLH 104 (112)
T ss_pred ccccccccceeCCCCCCccccccchhhhhhcc
Confidence 00012234799999999999999999999888
No 89
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.93 E-value=1.2 Score=35.05 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=13.4
Q ss_pred CceeCCccccccCcc
Q 045316 481 SEHKCNICNKIFPTG 495 (568)
Q Consensus 481 k~f~C~~C~k~F~~~ 495 (568)
.|-.|+.||..|.-.
T Consensus 25 ~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCPKCGTEFPPE 39 (108)
T ss_pred CCccCCCCCCccCcc
Confidence 589999999999876
No 90
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=78.88 E-value=1.4 Score=29.06 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=18.3
Q ss_pred CCccccccccccCCc-----hhHHHHHH-Hh
Q 045316 93 LPRTCSECGKQFTSG-----KALGGHKR-AC 117 (568)
Q Consensus 93 ~~~~C~~C~k~F~~~-----~~L~~H~~-~H 117 (568)
..-.|.+|++.+... +.|.+|++ .|
T Consensus 17 ~~a~C~~C~~~l~~~~~~gTs~L~rHl~~~h 47 (50)
T smart00614 17 QRAKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47 (50)
T ss_pred eEEEecCCCCEeeeCCCCCcHHHHHHHHhHC
Confidence 345788888888665 58888887 45
No 91
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=78.13 E-value=0.86 Score=30.43 Aligned_cols=30 Identities=17% Similarity=0.450 Sum_probs=20.9
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
.|+|..||..|.....+. . ..+-.|+.||.
T Consensus 5 ey~C~~Cg~~fe~~~~~~------~-~~~~~CP~Cg~ 34 (52)
T TIGR02605 5 EYRCTACGHRFEVLQKMS------D-DPLATCPECGG 34 (52)
T ss_pred EEEeCCCCCEeEEEEecC------C-CCCCCCCCCCC
Confidence 389999999998543222 1 35567998885
No 92
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=77.44 E-value=1.3 Score=27.07 Aligned_cols=18 Identities=22% Similarity=0.619 Sum_probs=13.5
Q ss_pred cCCCCCceeCCccccccC
Q 045316 476 GGGGSSEHKCNICNKIFP 493 (568)
Q Consensus 476 ~H~~~k~f~C~~C~k~F~ 493 (568)
+-.+.+..+|..|+-.|.
T Consensus 19 l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 19 LPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred cccCCcEEECCCCCcEee
Confidence 334556899999998885
No 93
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=76.87 E-value=0.96 Score=28.32 Aligned_cols=30 Identities=17% Similarity=0.396 Sum_probs=21.4
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
.|+|..||+.|........ ...-.|+.||.
T Consensus 5 ~y~C~~Cg~~fe~~~~~~~-------~~~~~CP~Cg~ 34 (41)
T smart00834 5 EYRCEDCGHTFEVLQKISD-------DPLATCPECGG 34 (41)
T ss_pred EEEcCCCCCEEEEEEecCC-------CCCCCCCCCCC
Confidence 3899999999975544321 45667988886
No 94
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=76.73 E-value=1.3 Score=27.22 Aligned_cols=13 Identities=15% Similarity=0.723 Sum_probs=10.8
Q ss_pred CceeCCccccccC
Q 045316 481 SEHKCNICNKIFP 493 (568)
Q Consensus 481 k~f~C~~C~k~F~ 493 (568)
..+.|+.|+..|.
T Consensus 24 ~~v~C~~C~~~~~ 36 (38)
T TIGR02098 24 GKVRCGKCGHVWY 36 (38)
T ss_pred CEEECCCCCCEEE
Confidence 3689999999885
No 95
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=75.34 E-value=1.6 Score=29.37 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=21.8
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
.|.|+.||..-..+..--|- -..+|+|+.||+
T Consensus 27 ~F~CPnCGe~~I~Rc~~CRk-----~g~~Y~Cp~CGF 58 (61)
T COG2888 27 KFPCPNCGEVEIYRCAKCRK-----LGNPYRCPKCGF 58 (61)
T ss_pred EeeCCCCCceeeehhhhHHH-----cCCceECCCcCc
Confidence 49999999766554432221 136899999985
No 96
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=75.07 E-value=1.5 Score=37.04 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCcccccccccccCChhhhhh-hhhcCCCCCCccccccchhhhcc
Q 045316 404 AQTYSCLICNKSFDKHQALGG-HVASHNKNKNVKESSSASAAAED 447 (568)
Q Consensus 404 ~k~~~C~~C~k~F~~~~~L~~-H~~~H~~~k~~~C~~C~~~f~~~ 447 (568)
..-|.|+.|++.|.....+.. ++ ...|.|+.||......
T Consensus 97 ~~~Y~Cp~C~~~y~~~ea~~~~d~-----~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPNCQSKYTFLEANQLLDM-----DGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcCCCCEeeHHHHHHhcCC-----CCcEECCCCCCEEEEc
Confidence 346999999999997665543 21 3349999999765443
No 97
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=74.06 E-value=2.1 Score=25.99 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=13.2
Q ss_pred cCCCCCceeCCccccccC
Q 045316 476 GGGGSSEHKCNICNKIFP 493 (568)
Q Consensus 476 ~H~~~k~f~C~~C~k~F~ 493 (568)
+-.+....+|..|+..|.
T Consensus 19 ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 19 IPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred CCCCCcEEECCCCCCEeC
Confidence 334445789999999884
No 98
>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]
Probab=73.70 E-value=3.9 Score=39.35 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=48.1
Q ss_pred CccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCccccccc---ccccCchhH
Q 045316 94 PRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCH---QSFRSVKSL 170 (568)
Q Consensus 94 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~---k~F~~~~~L 170 (568)
|-.|-+|++.|.+...-..||..++|- |-+.-.. ......|..-+..-.+.. |.|-.|+ +.|.+....
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~Hgf------fIPdreY-L~D~~GLl~YLgeKV~~~--~~CL~CN~~~~~f~sleav 236 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGF------FIPDREY-LTDEKGLLKYLGEKVGIG--FICLFCNELGRPFSSLEAV 236 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCC------cCCchHh-hhchhHHHHHHHHHhccC--ceEEEeccccCcccccHHH
Confidence 356888888888888888888877762 1111000 111112222222222222 8999999 999999999
Q ss_pred HHHhh--hCCCCCc
Q 045316 171 YGHMR--KHPEREW 182 (568)
Q Consensus 171 ~~H~~--~H~~~~~ 182 (568)
+.||. .|..-+|
T Consensus 237 r~HM~~K~HCkl~y 250 (390)
T KOG2785|consen 237 RAHMRDKGHCKLPY 250 (390)
T ss_pred HHHHhhccCcccCC
Confidence 99995 4643333
No 99
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=73.58 E-value=0.66 Score=39.06 Aligned_cols=17 Identities=18% Similarity=0.577 Sum_probs=13.9
Q ss_pred cccccccccccCchhHH
Q 045316 155 HICYVCHQSFRSVKSLY 171 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~L~ 171 (568)
++|+.||++|.+...+.
T Consensus 29 ~~c~~c~~~f~~~e~~~ 45 (154)
T PRK00464 29 RECLACGKRFTTFERVE 45 (154)
T ss_pred eeccccCCcceEeEecc
Confidence 89999999998866543
No 100
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=72.58 E-value=2 Score=27.44 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=21.6
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccchhh
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAA 444 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f 444 (568)
.|.|..||..|.-. ...+.+|+.||..-
T Consensus 2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~rI 29 (44)
T smart00659 2 IYICGECGRENEIK-----------SKDVVRCRECGYRI 29 (44)
T ss_pred EEECCCCCCEeecC-----------CCCceECCCCCceE
Confidence 38999999998754 33578999998654
No 101
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=71.03 E-value=2 Score=36.62 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=27.6
Q ss_pred CCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhh
Q 045316 403 TAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAA 445 (568)
Q Consensus 403 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~ 445 (568)
...-|.|+.|+..|+.-.++. .-|.|+.||..-.
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L~ 139 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAMLD 139 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEee
Confidence 344699999999999999986 2699999986543
No 102
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=70.91 E-value=2.5 Score=43.26 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=24.4
Q ss_pred CCCcccccccccccCChhhhhhhhhcCC
Q 045316 403 TAQTYSCLICNKSFDKHQALGGHVASHN 430 (568)
Q Consensus 403 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~ 430 (568)
...+..|..||.+|........||..|.
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhhh
Confidence 3467899999999999999999988875
No 103
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.36 E-value=2.9 Score=37.64 Aligned_cols=55 Identities=15% Similarity=0.246 Sum_probs=44.5
Q ss_pred cchhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchhHHHHHHHhccccCCC
Q 045316 60 AAAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKALGGHKRACLQKIKNG 124 (568)
Q Consensus 60 ~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~ 124 (568)
..|..||...... .+.+|+-+.+ ...|.|-.|++.|.. ..++.|...-+....|+
T Consensus 4 FtCnvCgEsvKKp-~vekH~srCr--------n~~fSCIDC~k~F~~-~sYknH~kCITEaQKYg 58 (276)
T KOG2186|consen 4 FTCNVCGESVKKP-QVEKHMSRCR--------NAYFSCIDCGKTFER-VSYKNHTKCITEAQKYG 58 (276)
T ss_pred Eehhhhhhhcccc-chHHHHHhcc--------CCeeEEeeccccccc-chhhhhhhhcchHHHhh
Confidence 4789999887654 6777998877 488999999999998 89999998766655554
No 104
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=69.91 E-value=2.8 Score=33.45 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.5
Q ss_pred CceeCCccccccCcccccc
Q 045316 481 SEHKCNICNKIFPTGQALG 499 (568)
Q Consensus 481 k~f~C~~C~k~F~~~~~L~ 499 (568)
.|-.|+.||..|.-...++
T Consensus 25 ~p~vcP~cg~~~~~~~~~~ 43 (129)
T TIGR02300 25 RPAVSPYTGEQFPPEEALK 43 (129)
T ss_pred CCccCCCcCCccCcchhhc
Confidence 5899999999998775555
No 105
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=69.83 E-value=1.6 Score=36.82 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=15.0
Q ss_pred CCCCccccccccccCCchh
Q 045316 91 LGLPRTCSECGKQFTSGKA 109 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~~~~~ 109 (568)
....|.|+.|+..|.....
T Consensus 96 ~~~~Y~Cp~C~~~y~~~ea 114 (147)
T smart00531 96 NNAYYKCPNCQSKYTFLEA 114 (147)
T ss_pred CCcEEECcCCCCEeeHHHH
Confidence 4568999999999986543
No 106
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=69.74 E-value=2 Score=34.23 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=20.0
Q ss_pred chhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCc
Q 045316 61 AAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSG 107 (568)
Q Consensus 61 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~ 107 (568)
.|..|++.|.-. +..|..|++||..|.-.
T Consensus 11 ~Cp~cg~kFYDL------------------nk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 11 ICPNTGSKFYDL------------------NRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cCCCcCcccccc------------------CCCCccCCCcCCccCcc
Confidence 677777777653 35677777787777555
No 107
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=69.12 E-value=2.3 Score=37.12 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=28.1
Q ss_pred CcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccC
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDS 448 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~ 448 (568)
.-|.|+.|++.|+.-.++. .-|.|+.||..-..-.
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L~~~d 150 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME---------YGFRCPQCGEMLEEYD 150 (178)
T ss_pred CEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCCeecc
Confidence 4699999999999988874 3699999997655443
No 108
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=69.10 E-value=2.6 Score=27.21 Aligned_cols=12 Identities=17% Similarity=0.443 Sum_probs=9.9
Q ss_pred ceeCCccccccC
Q 045316 482 EHKCNICNKIFP 493 (568)
Q Consensus 482 ~f~C~~C~k~F~ 493 (568)
.+.|+.||..+.
T Consensus 21 ~~~Cp~CG~~~~ 32 (46)
T PRK00398 21 GVRCPYCGYRIL 32 (46)
T ss_pred ceECCCCCCeEE
Confidence 789999997665
No 109
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=68.60 E-value=4.2 Score=32.71 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=41.0
Q ss_pred CCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCC
Q 045316 402 STAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSS 481 (568)
Q Consensus 402 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k 481 (568)
...+.|+|.+|..+.....-| ||-.| ||+ ..|+. ...+|..|-.+|.
T Consensus 76 ~d~~lYeCnIC~etS~ee~FL----------KPneC--CgY--~iCn~----------------Cya~LWK~~~~yp--- 122 (140)
T PF05290_consen 76 LDPKLYECNICKETSAEERFL----------KPNEC--CGY--SICNA----------------CYANLWKFCNLYP--- 122 (140)
T ss_pred cCCCceeccCcccccchhhcC----------Ccccc--cch--HHHHH----------------HHHHHHHHcccCC---
Confidence 344679999999988766444 46666 443 22222 3335777777664
Q ss_pred ceeCCccccccCcccc
Q 045316 482 EHKCNICNKIFPTGQA 497 (568)
Q Consensus 482 ~f~C~~C~k~F~~~~~ 497 (568)
.|++|.-+|++.+.
T Consensus 123 --vCPvCkTSFKss~~ 136 (140)
T PF05290_consen 123 --VCPVCKTSFKSSSS 136 (140)
T ss_pred --CCCccccccccccc
Confidence 69999999997654
No 110
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=68.51 E-value=4 Score=34.85 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.0
Q ss_pred CCCCccccccccccCCchhHH
Q 045316 91 LGLPRTCSECGKQFTSGKALG 111 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~~~~~L~ 111 (568)
...-|.|+.|+..|+....+.
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~ 126 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME 126 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH
Confidence 457799999999999888885
No 111
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=67.89 E-value=3.9 Score=22.68 Aligned_cols=20 Identities=15% Similarity=0.421 Sum_probs=15.8
Q ss_pred ccccccccccCCchhHHHHHH
Q 045316 95 RTCSECGKQFTSGKALGGHKR 115 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~ 115 (568)
..|++|++.+ ....+..|+.
T Consensus 2 v~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 2 VQCPVCFREV-PENLINSHLD 21 (26)
T ss_pred CcCCCCcCcc-cHHHHHHHHH
Confidence 3699999998 6678888876
No 112
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=67.89 E-value=2.6 Score=34.41 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=17.9
Q ss_pred CCCccccccccccCCchhHHHHHHHhccccC
Q 045316 92 GLPRTCSECGKQFTSGKALGGHKRACLQKIK 122 (568)
Q Consensus 92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 122 (568)
.....|-+||+.|+. |++|++.|+|-.|
T Consensus 70 ~d~i~clecGk~~k~---LkrHL~~~~gltp 97 (132)
T PF05443_consen 70 PDYIICLECGKKFKT---LKRHLRTHHGLTP 97 (132)
T ss_dssp SS-EE-TBT--EESB---HHHHHHHTT-S-H
T ss_pred cCeeEEccCCcccch---HHHHHHHccCCCH
Confidence 456789999999975 5999999988654
No 113
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=66.69 E-value=2.4 Score=36.94 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.6
Q ss_pred CCCCccccccccccCCchhH
Q 045316 91 LGLPRTCSECGKQFTSGKAL 110 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~~~~~L 110 (568)
...-|.|+.|+..|+....+
T Consensus 114 ~~~~Y~Cp~C~~rytf~eA~ 133 (178)
T PRK06266 114 NNMFFFCPNCHIRFTFDEAM 133 (178)
T ss_pred CCCEEECCCCCcEEeHHHHh
Confidence 45679999999999888766
No 114
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=66.17 E-value=3 Score=27.49 Aligned_cols=9 Identities=22% Similarity=0.940 Sum_probs=6.9
Q ss_pred ceeCCcccc
Q 045316 482 EHKCNICNK 490 (568)
Q Consensus 482 ~f~C~~C~k 490 (568)
.|.|++|+.
T Consensus 34 ~w~CP~C~a 42 (50)
T cd00730 34 DWVCPVCGA 42 (50)
T ss_pred CCCCCCCCC
Confidence 478888875
No 115
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=66.11 E-value=2.7 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.458 Sum_probs=20.8
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccchhh
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAA 444 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f 444 (568)
.|.|..||+.|..- .......|+.||..-
T Consensus 6 ~Y~C~~Cg~~~~~~----------~~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELD----------QETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehh----------hccCceeCCCCCcEE
Confidence 59999999999211 133568899888654
No 116
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=65.95 E-value=2.5 Score=34.54 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=18.0
Q ss_pred CCcccccccccccCChhhhhhhhhcCCCCCC
Q 045316 404 AQTYSCLICNKSFDKHQALGGHVASHNKNKN 434 (568)
Q Consensus 404 ~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 434 (568)
+....|-+|||.|. .|++|++.|+|..|
T Consensus 70 ~d~i~clecGk~~k---~LkrHL~~~~gltp 97 (132)
T PF05443_consen 70 PDYIICLECGKKFK---TLKRHLRTHHGLTP 97 (132)
T ss_dssp SS-EE-TBT--EES---BHHHHHHHTT-S-H
T ss_pred cCeeEEccCCcccc---hHHHHHHHccCCCH
Confidence 34578999999996 45999999988765
No 117
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=65.77 E-value=3.1 Score=22.52 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=7.1
Q ss_pred cccccccc
Q 045316 155 HICYVCHQ 162 (568)
Q Consensus 155 ~~C~~C~k 162 (568)
|.|+.||+
T Consensus 17 f~CPnCG~ 24 (24)
T PF07754_consen 17 FPCPNCGF 24 (24)
T ss_pred EeCCCCCC
Confidence 99999985
No 118
>PF14353 CpXC: CpXC protein
Probab=65.26 E-value=3 Score=34.21 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=21.3
Q ss_pred CceeCCccccccCcccccccccccC
Q 045316 481 SEHKCNICNKIFPTGQALGGHKRCH 505 (568)
Q Consensus 481 k~f~C~~C~k~F~~~~~L~~H~r~H 505 (568)
-.|.|+.||..|.-...+..|-..|
T Consensus 37 ~~~~CP~Cg~~~~~~~p~lY~D~~~ 61 (128)
T PF14353_consen 37 FSFTCPSCGHKFRLEYPLLYHDPEK 61 (128)
T ss_pred CEEECCCCCCceecCCCEEEEcCCC
Confidence 3699999999999999998886555
No 119
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=64.63 E-value=2.9 Score=28.30 Aligned_cols=11 Identities=18% Similarity=0.386 Sum_probs=9.0
Q ss_pred CceeCCccccc
Q 045316 481 SEHKCNICNKI 491 (568)
Q Consensus 481 k~f~C~~C~k~ 491 (568)
.+|.|+.||..
T Consensus 47 ~~Y~CP~CGF~ 57 (59)
T PRK14890 47 NPYTCPKCGFE 57 (59)
T ss_pred CceECCCCCCc
Confidence 38999999963
No 120
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=64.37 E-value=7.5 Score=36.84 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCcccccccccccCChhhhhhhhh-cCCCCCC-ccccccch
Q 045316 403 TAQTYSCLICNKSFDKHQALGGHVA-SHNKNKN-VKESSSAS 442 (568)
Q Consensus 403 ~~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~-~~C~~C~~ 442 (568)
.+..|.|++|++.=.+-..|..|.. .|....+ -.|++|+-
T Consensus 76 ~~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~ 117 (381)
T KOG1280|consen 76 DPQSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAA 117 (381)
T ss_pred ccccccCCcccccccchhHHHHHhhhcCcccCcceeeecccc
Confidence 3457999999999999999999975 5654332 35788863
No 121
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=64.20 E-value=3 Score=26.34 Aligned_cols=11 Identities=18% Similarity=0.540 Sum_probs=8.8
Q ss_pred CCceeCCcccc
Q 045316 480 SSEHKCNICNK 490 (568)
Q Consensus 480 ~k~f~C~~C~k 490 (568)
..+-.|+.||.
T Consensus 24 ~~~~~CP~Cg~ 34 (42)
T PF09723_consen 24 DDPVPCPECGS 34 (42)
T ss_pred CCCCcCCCCCC
Confidence 45778999987
No 122
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=63.17 E-value=2.6 Score=35.56 Aligned_cols=14 Identities=0% Similarity=-0.254 Sum_probs=9.1
Q ss_pred ccccccchhhhccC
Q 045316 435 VKESSSASAAAEDS 448 (568)
Q Consensus 435 ~~C~~C~~~f~~~~ 448 (568)
|+|+-||+.|..-.
T Consensus 29 ~~c~~c~~~f~~~e 42 (154)
T PRK00464 29 RECLACGKRFTTFE 42 (154)
T ss_pred eeccccCCcceEeE
Confidence 77777777665443
No 123
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=60.63 E-value=5.7 Score=31.47 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.6
Q ss_pred Cccc----cccccccCCchhHHHHHHHhcc
Q 045316 94 PRTC----SECGKQFTSGKALGGHKRACLQ 119 (568)
Q Consensus 94 ~~~C----~~C~k~F~~~~~L~~H~~~H~~ 119 (568)
-|.| ..|++.+.+...+.+|++.++|
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 4889 9999999999999999997764
No 124
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=59.72 E-value=2.2 Score=44.35 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=25.3
Q ss_pred CCCccccccccccCCchhHHHHHHHhcc
Q 045316 92 GLPRTCSECGKQFTSGKALGGHKRACLQ 119 (568)
Q Consensus 92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~ 119 (568)
...|.|..|+|.|....++..||++|.-
T Consensus 790 ~giFpCreC~kvF~KiKSrNAHMK~Hr~ 817 (907)
T KOG4167|consen 790 TGIFPCRECGKVFFKIKSRNAHMKTHRQ 817 (907)
T ss_pred CceeehHHHHHHHHHHhhhhHHHHHHHH
Confidence 4569999999999999999999999964
No 125
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=59.42 E-value=3 Score=29.88 Aligned_cols=38 Identities=8% Similarity=0.178 Sum_probs=24.1
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCcccc--ccchhhhc
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKES--SSASAAAE 446 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~--~C~~~f~~ 446 (568)
+.|+.||....-...-..+-. ..++-|+|. .||..|..
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~--~~~~Y~qC~N~eCg~tF~t 41 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT--TKERYHQCQNVNCSATFIT 41 (72)
T ss_pred ccCCCCCCccEEEEChhcChh--hheeeeecCCCCCCCEEEE
Confidence 678888887744444333322 456667887 77777754
No 126
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=59.19 E-value=6.3 Score=23.16 Aligned_cols=10 Identities=20% Similarity=0.600 Sum_probs=7.0
Q ss_pred cccccccccc
Q 045316 406 TYSCLICNKS 415 (568)
Q Consensus 406 ~~~C~~C~k~ 415 (568)
+..|..||..
T Consensus 17 ~irC~~CG~R 26 (32)
T PF03604_consen 17 PIRCPECGHR 26 (32)
T ss_dssp TSSBSSSS-S
T ss_pred cEECCcCCCe
Confidence 4789988865
No 127
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=58.37 E-value=5.8 Score=37.48 Aligned_cols=65 Identities=18% Similarity=0.392 Sum_probs=44.1
Q ss_pred CCcccccc--cccccCChhhhhhhhhc-CC-----CCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHh
Q 045316 404 AQTYSCLI--CNKSFDKHQALGGHVAS-HN-----KNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAA 475 (568)
Q Consensus 404 ~k~~~C~~--C~k~F~~~~~L~~H~~~-H~-----~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~ 475 (568)
.++|+|.+ |.+.+.....|+.|... |. |-+. -+-|.-
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~-----------------------------------~~ph~~ 391 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPA-----------------------------------PIPHQG 391 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCC-----------------------------------CCCcce
Confidence 47899977 99999999999998643 42 1110 000111
Q ss_pred cCCCCCceeCCccccccCcccccccccc
Q 045316 476 GGGGSSEHKCNICNKIFPTGQALGGHKR 503 (568)
Q Consensus 476 ~H~~~k~f~C~~C~k~F~~~~~L~~H~r 503 (568)
--...|+|+|++|.++++.-..|+.|+.
T Consensus 392 ~~~~nk~~r~~i~~~~~k~~~~l~~~~~ 419 (442)
T KOG4124|consen 392 FVVENKPYRCEVCSKRYKNLNGLKYHRT 419 (442)
T ss_pred eeeccCcccChhhhhhhccCCCCCceee
Confidence 1123579999999999998888877753
No 128
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=57.77 E-value=7.8 Score=35.94 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=45.5
Q ss_pred CCccccccccccCCchhHHHHHHHhccccCC---------CCcccCCCchhhhhhhccchhhhhhcCCcCCccccccccc
Q 045316 93 LPRTCSECGKQFTSGKALGGHKRACLQKIKN---------GTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQS 163 (568)
Q Consensus 93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~---------~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~ 163 (568)
-|..|+.|....-....|.+-..--..-++| +-..|-.|...|........-..+ ...+ |.|+.|...
T Consensus 321 LPi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~--ss~r-Y~Ce~CK~~ 397 (421)
T COG5151 321 LPISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDEST--SSGR-YQCELCKST 397 (421)
T ss_pred CCccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCCCCCCCCcccccc--cccc-eechhhhhh
Confidence 5667777776665555554433211112221 223344555555443221111111 1223 999999999
Q ss_pred ccCchhHHHHhhhCC
Q 045316 164 FRSVKSLYGHMRKHP 178 (568)
Q Consensus 164 F~~~~~L~~H~~~H~ 178 (568)
|-.--..-.|...|.
T Consensus 398 FC~dCdvfiHe~Lh~ 412 (421)
T COG5151 398 FCSDCDVFIHETLHF 412 (421)
T ss_pred hhhhhHHHHHHHHhh
Confidence 999888888988874
No 129
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=57.12 E-value=31 Score=34.39 Aligned_cols=76 Identities=7% Similarity=-0.110 Sum_probs=52.2
Q ss_pred cccccccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHH
Q 045316 395 KEEPVVMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAA 474 (568)
Q Consensus 395 ~~h~~~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~ 474 (568)
..+...+++...+.+.++.+.+.....+..|...|.++.++.+..+...+..++. +..+.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~ 379 (396)
T KOG2461|consen 320 DQSEVPATVSVWTGETIPVRTPAGQLIYTQSHSMEVAEPTDMAPNQIWKIYHTGV--------------------LGFLI 379 (396)
T ss_pred ccccccccccccCcCcccccccccccchhhhhhcccCCCCcccccccccceeccc--------------------cceee
Confidence 3344556666777788888888888888888888877777777666666666665 44555
Q ss_pred hcCCCCCceeCCcccc
Q 045316 475 AGGGGSSEHKCNICNK 490 (568)
Q Consensus 475 ~~H~~~k~f~C~~C~k 490 (568)
.+|...+.+.+..|++
T Consensus 380 ~~~~~~~~~~~~~~~~ 395 (396)
T KOG2461|consen 380 ITTDESECNNMSFVCK 395 (396)
T ss_pred eeccccccccccccCC
Confidence 5666666666666654
No 130
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=56.11 E-value=13 Score=35.05 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=47.8
Q ss_pred CCCccccccccccCCchhHHHHHHHhccccCC---------CCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccc
Q 045316 92 GLPRTCSECGKQFTSGKALGGHKRACLQKIKN---------GTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQ 162 (568)
Q Consensus 92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~---------~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k 162 (568)
.-|-.|++|+-.......|.+=.+-=..-+|| +-.+|-.|+-... +... |.|..|.-
T Consensus 288 sLP~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~-------------~~~~-y~C~~Ck~ 353 (378)
T KOG2807|consen 288 SLPIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELL-------------SSGR-YRCESCKN 353 (378)
T ss_pred cCCccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccccC-------------CCCc-EEchhccc
Confidence 47889999999999998888755422222222 2233434411111 1112 99999999
Q ss_pred cccCchhHHHHhhhCC
Q 045316 163 SFRSVKSLYGHMRKHP 178 (568)
Q Consensus 163 ~F~~~~~L~~H~~~H~ 178 (568)
.|-.--....|...|.
T Consensus 354 ~FCldCDv~iHesLh~ 369 (378)
T KOG2807|consen 354 VFCLDCDVFIHESLHN 369 (378)
T ss_pred eeeccchHHHHhhhhc
Confidence 9999888889988884
No 131
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=55.41 E-value=9.4 Score=34.55 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=21.9
Q ss_pred CcccccccccccCChhhhhhhhhcCC
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHN 430 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~ 430 (568)
+++.|+.||.....-..|..-.|+|.
T Consensus 208 k~~PCPKCg~et~eTkdLSmStR~hk 233 (314)
T PF06524_consen 208 KPIPCPKCGYETQETKDLSMSTRSHK 233 (314)
T ss_pred CCCCCCCCCCcccccccceeeeecch
Confidence 57899999998888888888888775
No 132
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.24 E-value=4.7 Score=35.76 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=29.8
Q ss_pred CcccccccccccCChhhhhhhhhcCCCCC----------C-----ccccccchh
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHNKNK----------N-----VKESSSASA 443 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k----------~-----~~C~~C~~~ 443 (568)
+.+.|++|+-.|....-+..-+|+-.|+- | ..||.|+++
T Consensus 18 k~ieCPvC~tkFkkeev~tgsiRiiagDld~~lkygninP~fY~VvvCP~C~yA 71 (267)
T COG1655 18 KTIECPVCNTKFKKEEVKTGSIRIIAGDLDFFLKYGNINPYFYDVVVCPICYYA 71 (267)
T ss_pred ceeccCcccchhhhhheeccceeEecccccceeeccccCCceeEEEEcchhhHH
Confidence 46899999999998877777777665542 3 379999865
No 133
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=54.95 E-value=7.6 Score=25.93 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=8.8
Q ss_pred ceeCCccccccCc
Q 045316 482 EHKCNICNKIFPT 494 (568)
Q Consensus 482 ~f~C~~C~k~F~~ 494 (568)
.-.|+.|+..+-+
T Consensus 21 iVvCp~CgapyHR 33 (54)
T PF14446_consen 21 IVVCPECGAPYHR 33 (54)
T ss_pred EEECCCCCCcccH
Confidence 5678888776543
No 134
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=54.75 E-value=5.8 Score=31.42 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=23.6
Q ss_pred cccc----cccccccCChhhhhhhhhcCCC
Q 045316 406 TYSC----LICNKSFDKHQALGGHVASHNK 431 (568)
Q Consensus 406 ~~~C----~~C~k~F~~~~~L~~H~~~H~~ 431 (568)
-|.| ..|+..+.+...+++|++.++|
T Consensus 80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence 3999 9999999999999999988764
No 135
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=54.58 E-value=6.3 Score=31.66 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=22.2
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCC
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKN 434 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~ 434 (568)
-..|-.+||.|. .|+||+.+|.|--|
T Consensus 76 ~IicLEDGkkfK---SLKRHL~t~~gmTP 101 (148)
T COG4957 76 YIICLEDGKKFK---SLKRHLTTHYGLTP 101 (148)
T ss_pred eEEEeccCcchH---HHHHHHhcccCCCH
Confidence 367999999995 69999999998655
No 136
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=54.27 E-value=5.5 Score=21.33 Aligned_cols=7 Identities=29% Similarity=0.795 Sum_probs=4.5
Q ss_pred ccccccc
Q 045316 157 CYVCHQS 163 (568)
Q Consensus 157 C~~C~k~ 163 (568)
|+.||..
T Consensus 16 C~~CG~~ 22 (23)
T PF13240_consen 16 CPNCGTP 22 (23)
T ss_pred hhhhCCc
Confidence 7777654
No 137
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=54.17 E-value=7.8 Score=38.10 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=23.9
Q ss_pred cccccccccccCchhHHHHhhhCCCCCccccCCC
Q 045316 155 HICYVCHQSFRSVKSLYGHMRKHPEREWRGVQPP 188 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~C~~c~ 188 (568)
|.|+.|.+.|+....|+- ..-..-.|.|.+|+
T Consensus 129 Y~Cp~C~kkyt~Lea~~L--~~~~~~~F~C~~C~ 160 (436)
T KOG2593|consen 129 YVCPNCQKKYTSLEALQL--LDNETGEFHCENCG 160 (436)
T ss_pred ccCCccccchhhhHHHHh--hcccCceEEEecCC
Confidence 999999999988776642 11114579999996
No 138
>PF15269 zf-C2H2_7: Zinc-finger
Probab=53.34 E-value=8.6 Score=24.07 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=19.4
Q ss_pred CccccccccccCCchhHHHHHHH
Q 045316 94 PRTCSECGKQFTSGKALGGHKRA 116 (568)
Q Consensus 94 ~~~C~~C~k~F~~~~~L~~H~~~ 116 (568)
.|+|-.|.....-++.|-.||+.
T Consensus 20 ~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 20 KYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred cceeecCCcccchHHHHHHHHHH
Confidence 36888999888889999999883
No 139
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=53.05 E-value=7 Score=30.78 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=23.4
Q ss_pred CCCCCccccccccccCCchhHHHHHHH
Q 045316 90 VLGLPRTCSECGKQFTSGKALGGHKRA 116 (568)
Q Consensus 90 ~~~~~~~C~~C~k~F~~~~~L~~H~~~ 116 (568)
+|...|-|-.|.+-|.+...|..|.++
T Consensus 53 PG~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 53 PGGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCCceeehhhhhhhhcchHHHHHHHhc
Confidence 467789999999999999999999884
No 140
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.61 E-value=7.1 Score=29.96 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=12.8
Q ss_pred CceeCCccccccCcc
Q 045316 481 SEHKCNICNKIFPTG 495 (568)
Q Consensus 481 k~f~C~~C~k~F~~~ 495 (568)
.|..|++||++|...
T Consensus 25 dPiVsPytG~s~P~s 39 (129)
T COG4530 25 DPIVSPYTGKSYPRS 39 (129)
T ss_pred CccccCcccccchHH
Confidence 599999999999544
No 141
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=52.26 E-value=6.9 Score=25.91 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.3
Q ss_pred cccccccccccCchh
Q 045316 155 HICYVCHQSFRSVKS 169 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~ 169 (568)
|.|+.||..+.-...
T Consensus 21 ~vC~~Cg~~~~~~~~ 35 (52)
T smart00661 21 FVCRKCGYEEPIEQK 35 (52)
T ss_pred EECCcCCCeEECCCc
Confidence 899999987765443
No 142
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=50.68 E-value=7.7 Score=34.78 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=23.2
Q ss_pred CCCCccccccccccCCchhHHHHHHHhccc
Q 045316 91 LGLPRTCSECGKQFTSGKALGGHKRACLQK 120 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~ 120 (568)
.+..|.|.+|+|.|+-..-.+.|+..-+.+
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence 567899999999999999999999964433
No 143
>PRK04023 DNA polymerase II large subunit; Validated
Probab=50.51 E-value=11 Score=41.45 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=20.2
Q ss_pred CcccccccccccCChhhhhhhhhcCCCCCCccccccchh------hhccCc
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASA------AAEDSK 449 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~------f~~~~~ 449 (568)
....|+.||... -.+.|+.||.. |..|+.
T Consensus 625 g~RfCpsCG~~t----------------~~frCP~CG~~Te~i~fCP~CG~ 659 (1121)
T PRK04023 625 GRRKCPSCGKET----------------FYRRCPFCGTHTEPVYRCPRCGI 659 (1121)
T ss_pred cCccCCCCCCcC----------------CcccCCCCCCCCCcceeCccccC
Confidence 457899999983 23788888853 556653
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=50.02 E-value=11 Score=40.61 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=8.8
Q ss_pred CCceeCCccccc
Q 045316 480 SSEHKCNICNKI 491 (568)
Q Consensus 480 ~k~f~C~~C~k~ 491 (568)
..|+.|+.||-.
T Consensus 473 ~~p~~Cp~Cgs~ 484 (730)
T COG1198 473 PIPQSCPECGSE 484 (730)
T ss_pred CCCCCCCCCCCC
Confidence 358888888864
No 145
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=49.92 E-value=13 Score=36.56 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=22.8
Q ss_pred ccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
.-+....|.|+.|.+.|.....|+. .-...-.|.|..|+-
T Consensus 122 d~t~~~~Y~Cp~C~kkyt~Lea~~L---~~~~~~~F~C~~C~g 161 (436)
T KOG2593|consen 122 DDTNVAGYVCPNCQKKYTSLEALQL---LDNETGEFHCENCGG 161 (436)
T ss_pred hccccccccCCccccchhhhHHHHh---hcccCceEEEecCCC
Confidence 3445556777777777766655543 222233477766653
No 146
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=47.98 E-value=5.9 Score=22.84 Aligned_cols=25 Identities=8% Similarity=0.340 Sum_probs=11.4
Q ss_pred cccccccccCChhhhhhhhhcCCCCCCccccccchh
Q 045316 408 SCLICNKSFDKHQALGGHVASHNKNKNVKESSSASA 443 (568)
Q Consensus 408 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~ 443 (568)
+|+.|+-.+.. .+.-.|.|+.|+..
T Consensus 4 ~Cp~C~se~~y-----------~D~~~~vCp~C~~e 28 (30)
T PF08274_consen 4 KCPLCGSEYTY-----------EDGELLVCPECGHE 28 (30)
T ss_dssp --TTT-----E-----------E-SSSEEETTTTEE
T ss_pred CCCCCCCccee-----------ccCCEEeCCccccc
Confidence 58888887776 33456888777653
No 147
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.80 E-value=12 Score=41.09 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=13.4
Q ss_pred CCceeCCccccccCccc
Q 045316 480 SSEHKCNICNKIFPTGQ 496 (568)
Q Consensus 480 ~k~f~C~~C~k~F~~~~ 496 (568)
...|.|..||..|.+.-
T Consensus 1035 rQ~fRC~kC~~kYRR~P 1051 (1121)
T PRK04023 1035 RQEFRCTKCGAKYRRPP 1051 (1121)
T ss_pred ccceeecccCcccccCC
Confidence 34689999999998654
No 148
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=47.64 E-value=12 Score=25.12 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=9.9
Q ss_pred ceeCCccccccC
Q 045316 482 EHKCNICNKIFP 493 (568)
Q Consensus 482 ~f~C~~C~k~F~ 493 (568)
...|+.||..|-
T Consensus 22 iV~Cp~CGaele 33 (54)
T TIGR01206 22 LVICDECGAELE 33 (54)
T ss_pred EEeCCCCCCEEE
Confidence 679999998765
No 149
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=46.51 E-value=11 Score=27.92 Aligned_cols=28 Identities=18% Similarity=0.352 Sum_probs=20.3
Q ss_pred CcccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
+|-.|..||..|..- -+ .+|-.|+.|..
T Consensus 57 ~Pa~CkkCGfef~~~-~i---------k~pSRCP~CKS 84 (97)
T COG3357 57 RPARCKKCGFEFRDD-KI---------KKPSRCPKCKS 84 (97)
T ss_pred cChhhcccCcccccc-cc---------CCcccCCcchh
Confidence 367899999999861 11 25888988853
No 150
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=45.58 E-value=8.6 Score=28.84 Aligned_cols=13 Identities=23% Similarity=0.583 Sum_probs=11.4
Q ss_pred CceeCCccccccC
Q 045316 481 SEHKCNICNKIFP 493 (568)
Q Consensus 481 k~f~C~~C~k~F~ 493 (568)
-.+.|.-|++.|.
T Consensus 53 GIW~C~~C~~~~A 65 (90)
T PTZ00255 53 GIWRCKGCKKTVA 65 (90)
T ss_pred EEEEcCCCCCEEe
Confidence 4799999999987
No 151
>PF01286 XPA_N: XPA protein N-terminal; InterPro: IPR022652 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. Skin cells of individual's with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-A is the most severe form of the disease and is due to defects in a 30 kDa nuclear protein called XPA (or XPAC) []. The sequence of the XPA protein is conserved from higher eukaryotes [] to yeast (gene RAD14) []. XPA is a hydrophilic protein of 247 to 296 amino-acid residues which has a C4-type zinc finger motif in its central section. This entry contains the zinc-finger containing region in the XPA protein. It is found N-terminal to PF05181 from PFAM ; PDB: 1D4U_A 1XPA_A.
Probab=45.32 E-value=8.6 Score=22.92 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=2.5
Q ss_pred cccccccc
Q 045316 155 HICYVCHQ 162 (568)
Q Consensus 155 ~~C~~C~k 162 (568)
|.+++|++
T Consensus 22 F~~~VCD~ 29 (34)
T PF01286_consen 22 FDLPVCDK 29 (34)
T ss_dssp TS-S--TT
T ss_pred CCcccccc
Confidence 55555543
No 152
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=44.36 E-value=7.9 Score=41.01 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=35.5
Q ss_pred CCccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHH
Q 045316 93 LPRTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYG 172 (568)
Q Consensus 93 ~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~ 172 (568)
...+|+.|+..++..--.+ =.| .||..|=+.+..... -+||.|+..|.-..-+..
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~k---C~H--------~FC~~Cvq~r~etRq--------------RKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITK---CGH--------VFCEECVQTRYETRQ--------------RKCPKCNAAFGANDVHRI 696 (698)
T ss_pred hceeCCCccCchhhHHHHh---cch--------HHHHHHHHHHHHHhc--------------CCCCCCCCCCCccccccc
Confidence 3568999996665442111 013 677777554443222 689999999998776665
Q ss_pred H
Q 045316 173 H 173 (568)
Q Consensus 173 H 173 (568)
|
T Consensus 697 ~ 697 (698)
T KOG0978|consen 697 H 697 (698)
T ss_pred C
Confidence 5
No 153
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=43.90 E-value=12 Score=21.50 Aligned_cols=12 Identities=17% Similarity=0.323 Sum_probs=5.4
Q ss_pred CceeCCcccccc
Q 045316 481 SEHKCNICNKIF 492 (568)
Q Consensus 481 k~f~C~~C~k~F 492 (568)
..|.|..|+..+
T Consensus 14 ~~Y~C~~Cdf~l 25 (30)
T PF07649_consen 14 WFYRCSECDFDL 25 (30)
T ss_dssp -EEE-TTT----
T ss_pred ceEECccCCCcc
Confidence 479999998654
No 154
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=43.72 E-value=12 Score=33.67 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=19.3
Q ss_pred cccccccccccCchhHHHHhhh-CC
Q 045316 155 HICYVCHQSFRSVKSLYGHMRK-HP 178 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~L~~H~~~-H~ 178 (568)
|.|+.|+|.|.-....++|+.. |.
T Consensus 78 ~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 78 WRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp EEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred ECCCCCCcccCChHHHHHHHhhcCH
Confidence 9999999999999999999865 65
No 155
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=43.09 E-value=8.6 Score=28.90 Aligned_cols=12 Identities=25% Similarity=0.639 Sum_probs=11.0
Q ss_pred ceeCCccccccC
Q 045316 482 EHKCNICNKIFP 493 (568)
Q Consensus 482 ~f~C~~C~k~F~ 493 (568)
.++|..|++.|.
T Consensus 53 IW~C~~C~~~~A 64 (91)
T TIGR00280 53 IWTCRKCGAKFA 64 (91)
T ss_pred EEEcCCCCCEEe
Confidence 799999999987
No 156
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=42.78 E-value=12 Score=26.64 Aligned_cols=15 Identities=20% Similarity=0.720 Sum_probs=8.0
Q ss_pred CceeCCccccccCcc
Q 045316 481 SEHKCNICNKIFPTG 495 (568)
Q Consensus 481 k~f~C~~C~k~F~~~ 495 (568)
+.+.|..||..|=..
T Consensus 24 rrhhCr~CG~~vC~~ 38 (69)
T PF01363_consen 24 RRHHCRNCGRVVCSS 38 (69)
T ss_dssp -EEE-TTT--EEECC
T ss_pred eeEccCCCCCEECCc
Confidence 478899988877543
No 157
>PRK01343 zinc-binding protein; Provisional
Probab=42.04 E-value=26 Score=23.81 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=10.2
Q ss_pred cccccccccccC
Q 045316 406 TYSCLICNKSFD 417 (568)
Q Consensus 406 ~~~C~~C~k~F~ 417 (568)
...|++|+|.|.
T Consensus 9 ~~~CP~C~k~~~ 20 (57)
T PRK01343 9 TRPCPECGKPST 20 (57)
T ss_pred CCcCCCCCCcCc
Confidence 478999999985
No 158
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=41.82 E-value=24 Score=22.08 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.6
Q ss_pred CccccccccccCC--chhHHHHHHHhc
Q 045316 94 PRTCSECGKQFTS--GKALGGHKRACL 118 (568)
Q Consensus 94 ~~~C~~C~k~F~~--~~~L~~H~~~H~ 118 (568)
.-.|+.||..|.. ...-..|.+.|.
T Consensus 13 ~~~C~~CgM~Y~~~~~eD~~~H~~yH~ 39 (41)
T PF13878_consen 13 ATTCPTCGMLYSPGSPEDEKLHKKYHD 39 (41)
T ss_pred CcCCCCCCCEECCCCHHHHHHHHHHHh
Confidence 4689999998865 456677887764
No 159
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=41.73 E-value=27 Score=31.73 Aligned_cols=13 Identities=0% Similarity=-0.302 Sum_probs=8.8
Q ss_pred CCCccccCCCchh
Q 045316 179 EREWRGVQPPKHY 191 (568)
Q Consensus 179 ~~~~~C~~c~~~~ 191 (568)
++++.|+.|+...
T Consensus 207 ~k~~PCPKCg~et 219 (314)
T PF06524_consen 207 GKPIPCPKCGYET 219 (314)
T ss_pred CCCCCCCCCCCcc
Confidence 5678888886444
No 160
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=41.52 E-value=14 Score=22.92 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=12.9
Q ss_pred ceeCCccccccCccc
Q 045316 482 EHKCNICNKIFPTGQ 496 (568)
Q Consensus 482 ~f~C~~C~k~F~~~~ 496 (568)
||+|..|++.|=...
T Consensus 12 ~f~C~~C~~~FC~~H 26 (39)
T smart00154 12 GFKCRHCGNLFCGEH 26 (39)
T ss_pred CeECCccCCcccccc
Confidence 899999999997654
No 161
>KOG4124 consensus Putative transcriptional repressor regulating G2/M transition [Transcription; Cell cycle control, cell division, chromosome partitioning]
Probab=40.92 E-value=6 Score=37.36 Aligned_cols=69 Identities=23% Similarity=0.351 Sum_probs=44.5
Q ss_pred CCCccccc--cccccCCchhHHHHHHH-hccccCCCCcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCch
Q 045316 92 GLPRTCSE--CGKQFTSGKALGGHKRA-CLQKIKNGTTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVK 168 (568)
Q Consensus 92 ~~~~~C~~--C~k~F~~~~~L~~H~~~-H~~~~~~~~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~ 168 (568)
.++|+|.+ |.+.++....|+.|... |...---+ ...-..|...-...++ |+|++|.++++...
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~-------------s~~~~ph~~~~~~nk~-~r~~i~~~~~k~~~ 412 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTP-------------TPAPIPHQGFVVENKP-YRCEVCSKRYKNLN 412 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCC-------------CCCCCCcceeeeccCc-ccChhhhhhhccCC
Confidence 67899975 99999999999888764 32211000 0011223333333455 99999999998887
Q ss_pred hHHHHh
Q 045316 169 SLYGHM 174 (568)
Q Consensus 169 ~L~~H~ 174 (568)
.|+-|.
T Consensus 413 ~l~~~~ 418 (442)
T KOG4124|consen 413 GLKYHR 418 (442)
T ss_pred CCCcee
Confidence 777665
No 162
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=40.41 E-value=21 Score=28.85 Aligned_cols=18 Identities=11% Similarity=0.039 Sum_probs=12.4
Q ss_pred cchHHHHHHHhcCCCCCc
Q 045316 465 ESSRELAAAAAGGGGSSE 482 (568)
Q Consensus 465 ~~~~~L~~H~~~H~~~k~ 482 (568)
+.|..|++|+++|.|--|
T Consensus 84 kkfKSLKRHL~t~~gmTP 101 (148)
T COG4957 84 KKFKSLKRHLTTHYGLTP 101 (148)
T ss_pred cchHHHHHHHhcccCCCH
Confidence 334459999999877544
No 163
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=38.58 E-value=19 Score=24.57 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=24.2
Q ss_pred ccccc--ccccccCchhHHHHhh-hCCCCCccccC----CCchhHHHHHh
Q 045316 155 HICYV--CHQSFRSVKSLYGHMR-KHPEREWRGVQ----PPKHYLLNHRR 197 (568)
Q Consensus 155 ~~C~~--C~k~F~~~~~L~~H~~-~H~~~~~~C~~----c~~~~l~~H~~ 197 (568)
..|+. |...+. +..|..|+. .-..++..|.+ |.....+..+.
T Consensus 10 v~C~~~cc~~~i~-r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~ 58 (60)
T PF02176_consen 10 VPCPNGCCNEMIP-RKELDDHLENECPKRPVPCPYSPYGCKERVPREDLE 58 (60)
T ss_dssp EE-TT--S-BEEE-CCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHH
T ss_pred eeCCCCCccccee-HHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHh
Confidence 67887 555555 568888887 34467778888 77655444443
No 164
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=38.35 E-value=10 Score=30.89 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.2
Q ss_pred cccccccccccCchhHHHHhh
Q 045316 155 HICYVCHQSFRSVKSLYGHMR 175 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~L~~H~~ 175 (568)
|.|.-||-.+-+..-|..|..
T Consensus 130 ysC~~CG~kyCsv~C~~~Hne 150 (156)
T KOG3362|consen 130 YSCVNCGTKYCSVRCLKTHNE 150 (156)
T ss_pred hHHHhcCCceeechhhhhccc
Confidence 999999999998888887754
No 165
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.07 E-value=15 Score=38.22 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=21.4
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCccccccchhh
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAA 444 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f 444 (568)
..|..||....-.. -...+..|.......|..||+..
T Consensus 214 ~~C~~Cg~~~~C~~-C~~~l~~h~~~~~l~Ch~Cg~~~ 250 (505)
T TIGR00595 214 LLCRSCGYILCCPN-CDVSLTYHKKEGKLRCHYCGYQE 250 (505)
T ss_pred eEhhhCcCccCCCC-CCCceEEecCCCeEEcCCCcCcC
Confidence 35777776655431 12334455556677887777543
No 166
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=37.89 E-value=13 Score=23.93 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=17.3
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
+.|+.||.. ....|.. ...|+|..|++
T Consensus 19 ~~CP~Cg~~--~~~~~~~-------~~~~~C~~C~~ 45 (46)
T PF12760_consen 19 FVCPHCGST--KHYRLKT-------RGRYRCKACRK 45 (46)
T ss_pred CCCCCCCCe--eeEEeCC-------CCeEECCCCCC
Confidence 779999975 2222222 56788977764
No 167
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=37.56 E-value=15 Score=20.78 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=13.0
Q ss_pred ccccccccccCChhhhhhhhh
Q 045316 407 YSCLICNKSFDKHQALGGHVA 427 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~ 427 (568)
|.|-.|++.| .....+.|..
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht~ 20 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHTS 20 (28)
T ss_dssp EEETTTTEEE-EGGGTTT---
T ss_pred CeeecCCCCc-CcCCcCCCCc
Confidence 5688899999 6666777754
No 168
>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed
Probab=36.92 E-value=12 Score=28.17 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=10.8
Q ss_pred ceeCCccccccC
Q 045316 482 EHKCNICNKIFP 493 (568)
Q Consensus 482 ~f~C~~C~k~F~ 493 (568)
.+.|..|++.|.
T Consensus 54 IW~C~~C~~~~A 65 (90)
T PRK03976 54 IWECRKCGAKFA 65 (90)
T ss_pred EEEcCCCCCEEe
Confidence 799999999987
No 169
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=36.10 E-value=20 Score=29.39 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=13.6
Q ss_pred CCceeCCccccccCcc
Q 045316 480 SSEHKCNICNKIFPTG 495 (568)
Q Consensus 480 ~k~f~C~~C~k~F~~~ 495 (568)
...|+|..|++.|...
T Consensus 51 ~qRyrC~~C~~tf~~~ 66 (129)
T COG3677 51 HQRYKCKSCGSTFTVE 66 (129)
T ss_pred ccccccCCcCcceeee
Confidence 5589999999999854
No 170
>PF05191 ADK_lid: Adenylate kinase, active site lid; InterPro: IPR007862 Adenylate kinases (ADK; 2.7.4.3 from EC) are phosphotransferases that catalyse the Mg-dependent reversible conversion of ATP and AMP to two molecules of ADP, an essential reaction for many processes in living cells. In large variants of adenylate kinase, the AMP and ATP substrates are buried in a domain that undergoes conformational changes from an open to a closed state when bound to substrate; the ligand is then contained within a highly specific environment required for catalysis. Adenylate kinase is a 3-domain protein consisting of a large central CORE domain flanked by a LID domain on one side and the AMP-binding NMPbind domain on the other []. The LID domain binds ATP and covers the phosphates at the active site. The substrates first bind the CORE domain, followed by closure of the active site by the LID and NMPbind domains. Comparisons of adenylate kinases have revealed a particular divergence in the active site lid. In some organisms, particularly the Gram-positive bacteria, residues in the lid domain have been mutated to cysteines and these cysteine residues (two CX(n)C motifs) are responsible for the binding of a zinc ion. The bound zinc ion in the lid domain is clearly structurally homologous to Zinc-finger domains. However, it is unclear whether the adenylate kinase lid is a novel zinc-finger DNA/RNA binding domain, or that the lid bound zinc serves a purely structural function [].; GO: 0004017 adenylate kinase activity; PDB: 3BE4_A 2OSB_B 2ORI_A 2EU8_A 3DL0_A 1P3J_A 2QAJ_A 2OO7_A 2P3S_A 3DKV_A ....
Probab=35.99 E-value=21 Score=21.68 Aligned_cols=30 Identities=3% Similarity=-0.189 Sum_probs=18.2
Q ss_pred ccccccccccccccccccccccccCCCccccccccCCC
Q 045316 288 LSADDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNN 325 (568)
Q Consensus 288 ~~C~~C~~~F~~~~~L~~H~~~h~~~~~~~c~~c~~~~ 325 (568)
..|+.||+.|. ...-.......|+.||..+
T Consensus 2 r~C~~Cg~~Yh--------~~~~pP~~~~~Cd~cg~~L 31 (36)
T PF05191_consen 2 RICPKCGRIYH--------IEFNPPKVEGVCDNCGGEL 31 (36)
T ss_dssp EEETTTTEEEE--------TTTB--SSTTBCTTTTEBE
T ss_pred cCcCCCCCccc--------cccCCCCCCCccCCCCCee
Confidence 35889999883 2223344567788887643
No 171
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=35.91 E-value=19 Score=35.63 Aligned_cols=27 Identities=22% Similarity=0.540 Sum_probs=23.6
Q ss_pred ccCCCCcccccccc-cccCChhhhhhhh
Q 045316 400 VMSTAQTYSCLICN-KSFDKHQALGGHV 426 (568)
Q Consensus 400 ~h~~~k~~~C~~C~-k~F~~~~~L~~H~ 426 (568)
.|--...|.|++|| +++..+.++.+|-
T Consensus 395 LHGL~~ey~CEICGNy~Y~GrkaF~RHF 422 (497)
T KOG2636|consen 395 LHGLDIEYNCEICGNYVYKGRKAFDRHF 422 (497)
T ss_pred hcCCCcccceeeccCccccCcHHHHHHh
Confidence 46666789999999 9999999999995
No 172
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.61 E-value=14 Score=26.41 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=21.3
Q ss_pred CccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCccccccCc
Q 045316 434 NVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIFPT 494 (568)
Q Consensus 434 ~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F~~ 494 (568)
.|.|..||..|. +..||+-- .--.|+.|+..|..
T Consensus 12 ~Y~c~~cg~~~d------------------------vvq~~~dd---plt~ce~c~a~~kk 45 (82)
T COG2331 12 SYECTECGNRFD------------------------VVQAMTDD---PLTTCEECGARLKK 45 (82)
T ss_pred EEeecccchHHH------------------------HHHhcccC---ccccChhhChHHHH
Confidence 378888877774 55555322 22369999876543
No 173
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=35.09 E-value=17 Score=30.20 Aligned_cols=22 Identities=14% Similarity=0.330 Sum_probs=16.4
Q ss_pred HHHHHhcCCCCCceeCCcccccc
Q 045316 470 LAAAAAGGGGSSEHKCNICNKIF 492 (568)
Q Consensus 470 L~~H~~~H~~~k~f~C~~C~k~F 492 (568)
.++|-.+-.|+ .|.|..|+-.-
T Consensus 129 ~RRhn~~~~g~-~YrC~~C~gkL 150 (156)
T COG3091 129 IRRHNTVRRGE-VYRCGKCGGKL 150 (156)
T ss_pred hhhcccccccc-eEEeccCCceE
Confidence 55666666777 99999998643
No 174
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=34.95 E-value=17 Score=29.09 Aligned_cols=32 Identities=6% Similarity=0.125 Sum_probs=22.5
Q ss_pred ccCCCCcccccccccccCChhhhhhhhhcCCCCCCccccccchh
Q 045316 400 VMSTAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASA 443 (568)
Q Consensus 400 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~ 443 (568)
+..-+-.+.|..||+.|..... -+.||.||..
T Consensus 64 I~~~p~~~~C~~Cg~~~~~~~~------------~~~CP~Cgs~ 95 (115)
T TIGR00100 64 IEDEPVECECEDCSEEVSPEID------------LYRCPKCHGI 95 (115)
T ss_pred EEeeCcEEEcccCCCEEecCCc------------CccCcCCcCC
Confidence 3344456899999999876532 4779888843
No 175
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.39 E-value=20 Score=22.43 Aligned_cols=18 Identities=33% Similarity=0.731 Sum_probs=13.8
Q ss_pred ccccccccccCCchhHHH
Q 045316 95 RTCSECGKQFTSGKALGG 112 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~ 112 (568)
-.|.+||+.|.....+.+
T Consensus 9 K~C~~C~rpf~WRKKW~~ 26 (42)
T PF10013_consen 9 KICPVCGRPFTWRKKWAR 26 (42)
T ss_pred CcCcccCCcchHHHHHHH
Confidence 469999999988766653
No 176
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=34.30 E-value=20 Score=29.96 Aligned_cols=10 Identities=20% Similarity=0.494 Sum_probs=5.3
Q ss_pred eeCCcccccc
Q 045316 483 HKCNICNKIF 492 (568)
Q Consensus 483 f~C~~C~k~F 492 (568)
=.|+.||...
T Consensus 131 ~~Cp~C~~~~ 140 (146)
T PF07295_consen 131 PPCPKCGHTE 140 (146)
T ss_pred CCCCCCCCCe
Confidence 3566665443
No 177
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=34.26 E-value=22 Score=24.00 Aligned_cols=15 Identities=33% Similarity=0.859 Sum_probs=11.6
Q ss_pred CceeCCccccccCcc
Q 045316 481 SEHKCNICNKIFPTG 495 (568)
Q Consensus 481 k~f~C~~C~k~F~~~ 495 (568)
+.+.|..||+.|-..
T Consensus 17 rk~~Cr~Cg~~~C~~ 31 (57)
T cd00065 17 RRHHCRNCGRIFCSK 31 (57)
T ss_pred cccccCcCcCCcChH
Confidence 467899999988753
No 178
>KOG4377 consensus Zn-finger protein [General function prediction only]
Probab=34.22 E-value=19 Score=35.11 Aligned_cols=158 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred cccccccccccccccccccccCCCccccccccCCCCCCCCCCcchHHhhhcCCccccCCCCCcccCCCCcchhhHhhhhh
Q 045316 291 DDCNDNKEQRGTFDHHRVVSSVDSGYGVLKIKDNNKIDDDNDEDDEREKKKGNVEMKDGNGLGFDNCNSEDMWTKKQQKK 370 (568)
Q Consensus 291 ~~C~~~F~~~~~L~~H~~~h~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (568)
+.|+-.+-.+..+.+|..+| .+.-.....+|.+-..
T Consensus 277 e~C~ykr~~k~DvirH~~~h----kkrdnsL~dgf~rfs~---------------------------------------- 312 (480)
T KOG4377|consen 277 EYCFYKRGQKNDVIRHVEIH----KKRDNSLIDGFHRFSN---------------------------------------- 312 (480)
T ss_pred ccccccccchhhhHHHHHHH----hhcccccccchhhcCc----------------------------------------
Q ss_pred HhhhccccccchhhcccccCCCCCcccccccCCCCcccccc--cccccCChhhhhhhhhcCCCCCC-------ccccccc
Q 045316 371 NKRRRLNELDDAVLEGTTAGGGALKEEPVVMSTAQTYSCLI--CNKSFDKHQALGGHVASHNKNKN-------VKESSSA 441 (568)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~h~~~k~~~C~~--C~k~F~~~~~L~~H~~~H~~~k~-------~~C~~C~ 441 (568)
.|-|.. |.| +-++...|-..|+..+- |.|.-||
T Consensus 313 -----------------------------------syhC~~~~C~k---sTsdV~~h~nFht~~~n~GfrrthfhC~r~g 354 (480)
T KOG4377|consen 313 -----------------------------------SYHCTGQICEK---STSDVLLHDNFHTDKRNNGFRRTHFHCQRIG 354 (480)
T ss_pred -----------------------------------cchhhhcccCc---ccccccccCccccccccCceecceeEEeccC
Q ss_pred --hhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCc------------------------eeCCc--cccccC
Q 045316 442 --SAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSE------------------------HKCNI--CNKIFP 493 (568)
Q Consensus 442 --~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~------------------------f~C~~--C~k~F~ 493 (568)
..|+.-.- -..|.+-+.++.- |.|.. |+..|.
T Consensus 355 CTdtfK~~kh--------------------k~yh~kdda~~~dGfkkf~k~e~cay~gCkys~~cnhfhc~r~Gc~~tl~ 414 (480)
T KOG4377|consen 355 CTDTFKDSKH--------------------KPYHYKDDAGEIDGFKKFFKDENCAYTGCKYSGICNHFHCDRLGCEATLY 414 (480)
T ss_pred Cccccccccc--------------------cccccCcchhhhhhhhhhhccccCCccCcccccceeeeeecccCCceEEE
Q ss_pred cccccccccccCcCCCCCCCCCCcccccccCccccCCCCCCCccccCCCCCCCCCCccccCCCCCCCchhhcc
Q 045316 494 TGQALGGHKRCHWTGPAEALSSSSQVTTSAGEVTQRAPSPSRRVHDFDLNDTPPEYYQFHGCEAAGPSAAAAT 566 (568)
Q Consensus 494 ~~~~L~~H~r~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~ 566 (568)
..+.+..|.|.|...+...++...+.. +...-|.-.+++...+.......-..+||+
T Consensus 415 s~sqm~shkrkheRqeqgepaa~~~~~----------------~pesSlDg~l~qg~~~~p~sl~~~qs~aA~ 471 (480)
T KOG4377|consen 415 SVSQMASHKRKHERQEQGEPAATGPRL----------------APESSLDGVLVQGRFEGPVSLITDQSTAAN 471 (480)
T ss_pred ehhhhhhhhhhhhhhhhccccccCCCC----------------CCCCCcccccccccccCCceeeeehhhhhh
No 179
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=34.20 E-value=14 Score=37.59 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=37.2
Q ss_pred hhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCC-CceeCCccccccCccc
Q 045316 419 HQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGS-SEHKCNICNKIFPTGQ 496 (568)
Q Consensus 419 ~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~-k~f~C~~C~k~F~~~~ 496 (568)
.+.|.+|-.+|....-=+|..|||.|.++-. .|+.| -...|..|..+|-.+.
T Consensus 238 E~~fvrHHWVHrrRqeGkC~~CgKgFQQKf~--------------------------FhsKEivAisCSWCKqayH~Kv 290 (1004)
T KOG0782|consen 238 ESGFVRHHWVHRRRQEGKCNTCGKGFQQKFF--------------------------FHSKEIVAISCSWCKQAYHLKV 290 (1004)
T ss_pred cccchHHhHhhHhhhccccchhhhhhhhhee--------------------------eccccEEEEEehHHHHHhhcch
Confidence 4478888888876666789999998876643 34333 2457888888887665
No 180
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=33.88 E-value=12 Score=28.43 Aligned_cols=39 Identities=10% Similarity=0.131 Sum_probs=25.4
Q ss_pred CCCcccccccccccCChhhhhhhhhcCCCCCCccccccchhhh
Q 045316 403 TAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAA 445 (568)
Q Consensus 403 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~ 445 (568)
-++.|.|+.||..-...-.|+.-. +.---.|.+||.+|.
T Consensus 19 L~k~FtCp~Cghe~vs~ctvkk~~----~~g~~~Cg~CGls~e 57 (104)
T COG4888 19 LPKTFTCPRCGHEKVSSCTVKKTV----NIGTAVCGNCGLSFE 57 (104)
T ss_pred CCceEecCccCCeeeeEEEEEecC----ceeEEEcccCcceEE
Confidence 457899999998877665544322 222356877777664
No 181
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.82 E-value=21 Score=35.60 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.3
Q ss_pred ccccccccccCCchhHHHHHHH
Q 045316 95 RTCSECGKQFTSGKALGGHKRA 116 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~~ 116 (568)
+.|.+|+|.|.+...|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 8899999999999999999984
No 182
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=33.24 E-value=20 Score=29.61 Aligned_cols=41 Identities=17% Similarity=0.229 Sum_probs=24.3
Q ss_pred CCCCcccccccccccCChh---hhh--hhhhcCC----CCCCccccccch
Q 045316 402 STAQTYSCLICNKSFDKHQ---ALG--GHVASHN----KNKNVKESSSAS 442 (568)
Q Consensus 402 ~~~k~~~C~~C~k~F~~~~---~L~--~H~~~H~----~~k~~~C~~C~~ 442 (568)
..+..+.|..||..|.... .|. .+..+|- ...-+.||.||.
T Consensus 66 ~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs 115 (135)
T PRK03824 66 EEEAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGS 115 (135)
T ss_pred ecceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCC
Confidence 3445699999999987652 221 1122232 134477999984
No 183
>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.
Probab=33.09 E-value=17 Score=23.08 Aligned_cols=16 Identities=31% Similarity=0.555 Sum_probs=10.5
Q ss_pred CceeCCccccccCccc
Q 045316 481 SEHKCNICNKIFPTGQ 496 (568)
Q Consensus 481 k~f~C~~C~k~F~~~~ 496 (568)
-||.|..|++.|=...
T Consensus 12 ~~~~C~~C~~~FC~~H 27 (43)
T PF01428_consen 12 LPFKCKHCGKSFCLKH 27 (43)
T ss_dssp SHEE-TTTS-EE-TTT
T ss_pred CCeECCCCCcccCccc
Confidence 3899999999997543
No 184
>COG1773 Rubredoxin [Energy production and conversion]
Probab=32.95 E-value=18 Score=24.28 Aligned_cols=13 Identities=15% Similarity=0.902 Sum_probs=11.1
Q ss_pred CceeCCccccccC
Q 045316 481 SEHKCNICNKIFP 493 (568)
Q Consensus 481 k~f~C~~C~k~F~ 493 (568)
+.|+|.+||..|.
T Consensus 2 ~~~~C~~CG~vYd 14 (55)
T COG1773 2 KRWRCSVCGYVYD 14 (55)
T ss_pred CceEecCCceEec
Confidence 3699999999886
No 185
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=32.66 E-value=18 Score=21.60 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=8.2
Q ss_pred cccccccccc
Q 045316 155 HICYVCHQSF 164 (568)
Q Consensus 155 ~~C~~C~k~F 164 (568)
+.|+.||..+
T Consensus 23 ~vC~~Cg~Ih 32 (34)
T PF14803_consen 23 LVCPACGFIH 32 (34)
T ss_dssp EEETTTTEEE
T ss_pred eECCCCCCEE
Confidence 8999998764
No 186
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=31.60 E-value=20 Score=29.75 Aligned_cols=33 Identities=12% Similarity=0.315 Sum_probs=25.4
Q ss_pred CcccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
-+|.|. |+..|-+. ++|-.+-.|+ .|.|..|+-
T Consensus 116 ~~Y~C~-C~q~~l~~---RRhn~~~~g~-~YrC~~C~g 148 (156)
T COG3091 116 YPYRCQ-CQQHYLRI---RRHNTVRRGE-VYRCGKCGG 148 (156)
T ss_pred eeEEee-cCCccchh---hhcccccccc-eEEeccCCc
Confidence 469999 99997654 6676666777 899977763
No 187
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.58 E-value=20 Score=38.71 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=19.0
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
..|..||..+.-.. -...+..|.......|..||+
T Consensus 384 l~C~~Cg~~~~C~~-C~~~L~~h~~~~~l~Ch~CG~ 418 (665)
T PRK14873 384 LACARCRTPARCRH-CTGPLGLPSAGGTPRCRWCGR 418 (665)
T ss_pred eEhhhCcCeeECCC-CCCceeEecCCCeeECCCCcC
Confidence 35777777665431 122233344455677877764
No 188
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=31.44 E-value=19 Score=28.70 Aligned_cols=14 Identities=14% Similarity=0.356 Sum_probs=9.3
Q ss_pred CcccccccccccCC
Q 045316 405 QTYSCLICNKSFDK 418 (568)
Q Consensus 405 k~~~C~~C~k~F~~ 418 (568)
-.+.|..||..|..
T Consensus 69 ~~~~C~~Cg~~~~~ 82 (113)
T PRK12380 69 AQAWCWDCSQVVEI 82 (113)
T ss_pred cEEEcccCCCEEec
Confidence 35778778776653
No 189
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=30.81 E-value=27 Score=23.03 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=8.1
Q ss_pred ccccccccccc
Q 045316 155 HICYVCHQSFR 165 (568)
Q Consensus 155 ~~C~~C~k~F~ 165 (568)
+.|..||..+-
T Consensus 38 ~~C~~Cgyt~~ 48 (50)
T PRK00432 38 WHCGKCGYTEF 48 (50)
T ss_pred EECCCcCCEEe
Confidence 88888887653
No 190
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=30.24 E-value=28 Score=34.59 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=13.8
Q ss_pred ceeCCccccccCccccc
Q 045316 482 EHKCNICNKIFPTGQAL 498 (568)
Q Consensus 482 ~f~C~~C~k~F~~~~~L 498 (568)
-|+|+.||+.+......
T Consensus 367 g~rC~kCg~~~~~~~~~ 383 (421)
T COG1571 367 GFRCKKCGTRARETLIK 383 (421)
T ss_pred CcccccccccCCccccc
Confidence 79999999998866533
No 191
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=30.17 E-value=42 Score=36.02 Aligned_cols=11 Identities=27% Similarity=0.588 Sum_probs=8.2
Q ss_pred ccccccccccC
Q 045316 407 YSCLICNKSFD 417 (568)
Q Consensus 407 ~~C~~C~k~F~ 417 (568)
-.|..||..+.
T Consensus 16 kFC~~CG~~l~ 26 (645)
T PRK14559 16 RFCQKCGTSLT 26 (645)
T ss_pred ccccccCCCCC
Confidence 35899988874
No 192
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=30.15 E-value=17 Score=38.73 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.3
Q ss_pred ceeCCccccccCccccccccc
Q 045316 482 EHKCNICNKIFPTGQALGGHK 502 (568)
Q Consensus 482 ~f~C~~C~k~F~~~~~L~~H~ 502 (568)
.=+||.|+.+|.-...+..|+
T Consensus 678 qRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 678 QRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred cCCCCCCCCCCCcccccccCC
Confidence 448999999999888777664
No 193
>PF12907 zf-met2: Zinc-binding
Probab=29.99 E-value=22 Score=22.16 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=22.2
Q ss_pred ccccccccccC---Chhhhhhhhh-cCCCCCCccc
Q 045316 407 YSCLICNKSFD---KHQALGGHVA-SHNKNKNVKE 437 (568)
Q Consensus 407 ~~C~~C~k~F~---~~~~L~~H~~-~H~~~k~~~C 437 (568)
+.|.+|-.+|. +...|..|.. .|....+-.|
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~~~~~C 36 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPKNTFEEC 36 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCCCCHHHc
Confidence 78999996664 4566999975 6776555555
No 194
>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]
Probab=29.30 E-value=17 Score=28.74 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=22.7
Q ss_pred CCCceeCCccccccCccccccccccc
Q 045316 479 GSSEHKCNICNKIFPTGQALGGHKRC 504 (568)
Q Consensus 479 ~~k~f~C~~C~k~F~~~~~L~~H~r~ 504 (568)
|--.|-|-.|.+-|.+...|..|.|+
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhc
Confidence 34469999999999999999999865
No 195
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=29.25 E-value=23 Score=23.17 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=13.5
Q ss_pred CCceeCCccccccCccc
Q 045316 480 SSEHKCNICNKIFPTGQ 496 (568)
Q Consensus 480 ~k~f~C~~C~k~F~~~~ 496 (568)
.+.+.|..||..|.-..
T Consensus 2 Dk~l~C~dCg~~FvfTa 18 (49)
T PF13451_consen 2 DKTLTCKDCGAEFVFTA 18 (49)
T ss_pred CeeEEcccCCCeEEEeh
Confidence 46899999999987543
No 196
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=28.72 E-value=13 Score=29.66 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=6.1
Q ss_pred cccccccccccC
Q 045316 406 TYSCLICNKSFD 417 (568)
Q Consensus 406 ~~~C~~C~k~F~ 417 (568)
.+.|..||+.|.
T Consensus 70 ~~~C~~Cg~~~~ 81 (113)
T PF01155_consen 70 RARCRDCGHEFE 81 (113)
T ss_dssp EEEETTTS-EEE
T ss_pred cEECCCCCCEEe
Confidence 355666666553
No 197
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=28.63 E-value=26 Score=27.97 Aligned_cols=30 Identities=7% Similarity=0.118 Sum_probs=20.2
Q ss_pred CCCCcccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 402 STAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 402 ~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
.-+-.+.|..||..|..... .-+.||.||.
T Consensus 66 ~~p~~~~C~~Cg~~~~~~~~-----------~~~~CP~Cgs 95 (114)
T PRK03681 66 EQEAECWCETCQQYVTLLTQ-----------RVRRCPQCHG 95 (114)
T ss_pred eeCcEEEcccCCCeeecCCc-----------cCCcCcCcCC
Confidence 34456899999987764321 1267999884
No 198
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=28.58 E-value=19 Score=38.13 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=32.7
Q ss_pred ccccccccccCCchhHHHHHHHhccccCCCCcccCCCchhhhhhhc--cchhhhhhcCCcCCc-ccccccccc
Q 045316 95 RTCSECGKQFTSGKALGGHKRACLQKIKNGTTHNNQNPRLIKKAVA--VKPEEAGEEGNINNH-ICYVCHQSF 164 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~~~~c~~c~~~f~~~~~--l~~H~~~h~~~~~~~-~C~~C~k~F 164 (568)
-.|..|++.|.+...+.. +|.|+- +.++..+|..|...+..... |...-. ..+.+++ .|+.|-+.+
T Consensus 461 dtC~~C~kkFfSlsK~L~-~RKHHC-RkCGrVFC~~CSSnRs~yp~aKLpKPgs--seE~ppRRVCD~CYdq~ 529 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLG-TRAHHC-RSCGIRLCVFCITKRAHYSFAKLAKPGS--SDEAEERLVCDTCYKEY 529 (1374)
T ss_pred CcccCcCCcccccccccc-cccccc-cCCccccCccccCCcccCcccccCCCCC--cccccccchhHHHHHHH
Confidence 569999999976422110 122221 23555777777665543221 211111 1111124 788887666
No 199
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=28.53 E-value=26 Score=23.63 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=9.9
Q ss_pred cccccccccccCCh
Q 045316 406 TYSCLICNKSFDKH 419 (568)
Q Consensus 406 ~~~C~~C~k~F~~~ 419 (568)
.+.|..||.+--.+
T Consensus 37 ~irCReCG~RIlyK 50 (62)
T KOG3507|consen 37 VIRCRECGYRILYK 50 (62)
T ss_pred cEehhhcchHHHHH
Confidence 58899998765443
No 200
>KOG4317 consensus Predicted Zn-finger protein [Function unknown]
Probab=28.51 E-value=11 Score=35.10 Aligned_cols=33 Identities=15% Similarity=0.135 Sum_probs=23.6
Q ss_pred CcccCCCchhhhhhhccchhhhhhcCCcCCcccccccccccCchhHHHHh
Q 045316 125 TTHNNQNPRLIKKAVAVKPEEAGEEGNINNHICYVCHQSFRSVKSLYGHM 174 (568)
Q Consensus 125 ~~~c~~c~~~f~~~~~l~~H~~~h~~~~~~~~C~~C~k~F~~~~~L~~H~ 174 (568)
|.+|..|+..|.. |+|+-|+..|-+..-++.|.
T Consensus 7 ~~~C~ic~vq~~~-----------------YtCPRCn~~YCsl~CYr~h~ 39 (383)
T KOG4317|consen 7 FLACGICGVQKRE-----------------YTCPRCNLLYCSLKCYRNHK 39 (383)
T ss_pred eeecccccccccc-----------------ccCCCCCccceeeeeecCCC
Confidence 4566667665543 99999999888776666554
No 201
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.16 E-value=28 Score=36.91 Aligned_cols=29 Identities=14% Similarity=0.321 Sum_probs=24.0
Q ss_pred cccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 408 SCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 408 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
-|+.|.+.|...-+-+-|. .|..|+.||=
T Consensus 153 lC~~C~~EY~dP~nRRfHA------Qp~aCp~CGP 181 (750)
T COG0068 153 LCPFCDKEYKDPLNRRFHA------QPIACPKCGP 181 (750)
T ss_pred CCHHHHHHhcCcccccccc------ccccCcccCC
Confidence 4999999999988877765 5788999984
No 202
>PF11494 Ta0938: Ta0938; InterPro: IPR021585 Ta0938 is a protein of unknown function however the structure has been determined. The protein has a novel fold and a putative Zn-binding motif. The structure has two different parts, one region contains a beta sheet flanked by two alpha helices and the other contains a bundle of loops which contain all cysteines in the protein. ; PDB: 2FQH_A.
Probab=27.86 E-value=41 Score=25.39 Aligned_cols=16 Identities=13% Similarity=0.654 Sum_probs=5.9
Q ss_pred CCCcccccccccccCC
Q 045316 403 TAQTYSCLICNKSFDK 418 (568)
Q Consensus 403 ~~k~~~C~~C~k~F~~ 418 (568)
+.|.-.|.+||++...
T Consensus 11 g~ke~~CalCG~tWg~ 26 (105)
T PF11494_consen 11 GTKEMGCALCGATWGD 26 (105)
T ss_dssp -SGGGS-SS---S---
T ss_pred ccccccccccCCcHHH
Confidence 4456789999988763
No 203
>KOG2636 consensus Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=27.65 E-value=41 Score=33.37 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=23.3
Q ss_pred CCCCccccccc-cccCCchhHHHHHH
Q 045316 91 LGLPRTCSECG-KQFTSGKALGGHKR 115 (568)
Q Consensus 91 ~~~~~~C~~C~-k~F~~~~~L~~H~~ 115 (568)
...-|.|.+|| +++.-+..+.+|..
T Consensus 398 L~~ey~CEICGNy~Y~GrkaF~RHF~ 423 (497)
T KOG2636|consen 398 LDIEYNCEICGNYVYKGRKAFDRHFN 423 (497)
T ss_pred CCcccceeeccCccccCcHHHHHHhH
Confidence 57889999999 99999999999987
No 204
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.
Probab=27.43 E-value=22 Score=27.37 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=16.7
Q ss_pred HhcCCCCCceeCCccccccCcc
Q 045316 474 AAGGGGSSEHKCNICNKIFPTG 495 (568)
Q Consensus 474 ~~~H~~~k~f~C~~C~k~F~~~ 495 (568)
++.+.| +|+.|..||.-|.-.
T Consensus 72 ~~l~~g-~~~rC~eCG~~fkL~ 92 (97)
T cd00924 72 MWLEKG-KPKRCPECGHVFKLV 92 (97)
T ss_pred EEEeCC-CceeCCCCCcEEEEE
Confidence 456677 799999999998743
No 206
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=27.40 E-value=21 Score=28.72 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=28.8
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCccccccch-hhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeC
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS-AAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKC 485 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~-~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C 485 (568)
..|..|++.|.... ...-.|..|.+ .|..|+. ...++..+.|
T Consensus 55 ~~C~~C~~~fg~l~-----------~~~~~C~~C~~~VC~~C~~--------------------------~~~~~~~WlC 97 (118)
T PF02318_consen 55 RHCARCGKPFGFLF-----------NRGRVCVDCKHRVCKKCGV--------------------------YSKKEPIWLC 97 (118)
T ss_dssp SB-TTTS-BCSCTS-----------TTCEEETTTTEEEETTSEE--------------------------ETSSSCCEEE
T ss_pred cchhhhCCcccccC-----------CCCCcCCcCCccccCccCC--------------------------cCCCCCCEEC
Confidence 57999999885332 23356777763 4455654 2445678889
Q ss_pred Ccccc
Q 045316 486 NICNK 490 (568)
Q Consensus 486 ~~C~k 490 (568)
.+|.+
T Consensus 98 ~vC~k 102 (118)
T PF02318_consen 98 KVCQK 102 (118)
T ss_dssp HHHHH
T ss_pred hhhHH
Confidence 88876
No 207
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.28 E-value=18 Score=30.99 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=13.3
Q ss_pred CCCccccccccccCCch
Q 045316 92 GLPRTCSECGKQFTSGK 108 (568)
Q Consensus 92 ~~~~~C~~C~k~F~~~~ 108 (568)
+..|.|++|--.|..+.
T Consensus 129 ~~~~~CPiCl~~~sek~ 145 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKV 145 (187)
T ss_pred ccccCCCceecchhhcc
Confidence 45699999988887654
No 208
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=26.73 E-value=22 Score=20.51 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=6.4
Q ss_pred ccccccccccc
Q 045316 155 HICYVCHQSFR 165 (568)
Q Consensus 155 ~~C~~C~k~F~ 165 (568)
|+|+.|+..+=
T Consensus 14 Y~Cp~C~~~~C 24 (30)
T PF04438_consen 14 YRCPRCGARYC 24 (30)
T ss_dssp EE-TTT--EES
T ss_pred EECCCcCCcee
Confidence 99999987753
No 209
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=26.69 E-value=41 Score=22.03 Aligned_cols=25 Identities=32% Similarity=0.683 Sum_probs=17.6
Q ss_pred CceeCCcc------ccccCcccccccccccC
Q 045316 481 SEHKCNIC------NKIFPTGQALGGHKRCH 505 (568)
Q Consensus 481 k~f~C~~C------~k~F~~~~~L~~H~r~H 505 (568)
..|+|..| ..-|.....-..|...|
T Consensus 14 ~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H 44 (49)
T cd02335 14 IRIKCAECPDFDLCLECFSAGAEIGKHRNDH 44 (49)
T ss_pred cEEECCCCCCcchhHHhhhCcCCCCCCCCCC
Confidence 46777654 56777777777887777
No 210
>PF15135 UPF0515: Uncharacterised protein UPF0515
Probab=26.64 E-value=40 Score=30.52 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=12.2
Q ss_pred cCCCCcccccccccccCC
Q 045316 401 MSTAQTYSCLICNKSFDK 418 (568)
Q Consensus 401 h~~~k~~~C~~C~k~F~~ 418 (568)
....+.|.|..|+.....
T Consensus 107 p~~drqFaC~~Cd~~WwR 124 (278)
T PF15135_consen 107 PSVDRQFACSSCDHMWWR 124 (278)
T ss_pred cccceeeeccccchHHHh
Confidence 344567999999766543
No 211
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.40 E-value=27 Score=28.02 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=8.7
Q ss_pred CcccccccccccC
Q 045316 405 QTYSCLICNKSFD 417 (568)
Q Consensus 405 k~~~C~~C~k~F~ 417 (568)
-.+.|..||..|.
T Consensus 70 ~~~~C~~Cg~~~~ 82 (117)
T PRK00564 70 VELECKDCSHVFK 82 (117)
T ss_pred CEEEhhhCCCccc
Confidence 3477777776664
No 212
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=25.81 E-value=31 Score=34.41 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.2
Q ss_pred cccccccccccCchhHHHHhhh
Q 045316 155 HICYVCHQSFRSVKSLYGHMRK 176 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~L~~H~~~ 176 (568)
+-|.+|+|+|.+...|..|..+
T Consensus 293 lyC~vCnKsFKseKq~kNHEnS 314 (508)
T KOG0717|consen 293 LYCVVCNKSFKSEKQLKNHENS 314 (508)
T ss_pred eEEeeccccccchHHHHhhHHH
Confidence 7899999999999999999854
No 214
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=25.66 E-value=28 Score=21.69 Aligned_cols=12 Identities=17% Similarity=0.622 Sum_probs=10.4
Q ss_pred Cccccccccccc
Q 045316 405 QTYSCLICNKSF 416 (568)
Q Consensus 405 k~~~C~~C~k~F 416 (568)
++-.|++||..|
T Consensus 28 ~~~~CpYCg~~y 39 (40)
T PF10276_consen 28 GPVVCPYCGTRY 39 (40)
T ss_dssp CEEEETTTTEEE
T ss_pred CeEECCCCCCEE
Confidence 468999999988
No 215
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=25.36 E-value=40 Score=20.72 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=9.6
Q ss_pred CCccccccccccC-Cc-hhHHHHHH
Q 045316 93 LPRTCSECGKQFT-SG-KALGGHKR 115 (568)
Q Consensus 93 ~~~~C~~C~k~F~-~~-~~L~~H~~ 115 (568)
+.|-|++|+.-|. +. ..-+.|.+
T Consensus 2 ~ryyCdyC~~~~~~d~~~~Rk~H~~ 26 (38)
T PF06220_consen 2 PRYYCDYCKKYLTHDSPSIRKQHER 26 (38)
T ss_dssp -S-B-TTT--B-S--SHHHHHHHT-
T ss_pred cCeecccccceecCCChHHHHHhhc
Confidence 4688999998883 33 34466665
No 216
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=25.15 E-value=12 Score=36.18 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=20.6
Q ss_pred CcccccccccccCChhhh---hhh-hhcCCCCCC-ccccccchhh
Q 045316 405 QTYSCLICNKSFDKHQAL---GGH-VASHNKNKN-VKESSSASAA 444 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L---~~H-~~~H~~~k~-~~C~~C~~~f 444 (568)
+.|.|..|.+++...... ..| +..|.+.|. |+|..|++..
T Consensus 251 kav~C~~C~yt~~~~~~~C~~~~H~l~~~~a~KRFFkC~~C~~Rt 295 (344)
T PF09332_consen 251 KAVTCKQCKYTAFKPSDRCKEEGHPLKWHDAVKRFFKCKDCGNRT 295 (344)
T ss_dssp EEEEETTT--EESS--HHHHHTT--EEEEEEE-EEEE-T-TS-EE
T ss_pred EEEEcCCCCCcccCcchhHHhcCCceEEeeeeeeeEECCCCCCee
Confidence 458899999887665554 455 355666555 6787777654
No 217
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=25.05 E-value=16 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.674 Sum_probs=9.4
Q ss_pred CceeCCccccccCcc
Q 045316 481 SEHKCNICNKIFPTG 495 (568)
Q Consensus 481 k~f~C~~C~k~F~~~ 495 (568)
-.-.|.+||..|...
T Consensus 45 ~~~~C~~Cg~~~~~~ 59 (81)
T PF05129_consen 45 GILSCRVCGESFQTK 59 (81)
T ss_dssp EEEEESSS--EEEEE
T ss_pred EEEEecCCCCeEEEc
Confidence 356899998888654
No 218
>PF04641 Rtf2: Rtf2 RING-finger
Probab=24.97 E-value=15 Score=34.37 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=13.9
Q ss_pred CCCCccccccccccCCc
Q 045316 91 LGLPRTCSECGKQFTSG 107 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~~~ 107 (568)
...+|.|++.++.|...
T Consensus 110 ~~~~~~CPvt~~~~~~~ 126 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGK 126 (260)
T ss_pred CCceeECCCCCcccCCc
Confidence 46789999999999654
No 219
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=24.89 E-value=24 Score=23.69 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=9.6
Q ss_pred cccccccccccCc
Q 045316 155 HICYVCHQSFRSV 167 (568)
Q Consensus 155 ~~C~~C~k~F~~~ 167 (568)
..|+-||-.|..+
T Consensus 42 ~~CPNCgGelv~R 54 (57)
T PF06906_consen 42 GVCPNCGGELVRR 54 (57)
T ss_pred CcCcCCCCccccC
Confidence 7788888777543
No 220
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=24.39 E-value=12 Score=24.26 Aligned_cols=11 Identities=9% Similarity=-0.088 Sum_probs=5.6
Q ss_pred ccccccchhhh
Q 045316 435 VKESSSASAAA 445 (568)
Q Consensus 435 ~~C~~C~~~f~ 445 (568)
|.|+.|..+|+
T Consensus 8 y~CDLCn~~~p 18 (57)
T PF14445_consen 8 YSCDLCNSSHP 18 (57)
T ss_pred HhHHhhcccCc
Confidence 55555554443
No 221
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=24.35 E-value=36 Score=27.62 Aligned_cols=15 Identities=33% Similarity=1.063 Sum_probs=13.1
Q ss_pred ceeCCccccccCccc
Q 045316 482 EHKCNICNKIFPTGQ 496 (568)
Q Consensus 482 ~f~C~~C~k~F~~~~ 496 (568)
|++|..||+.|...+
T Consensus 1 PH~Ct~Cg~~f~dgs 15 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGS 15 (131)
T ss_pred CcccCcCCCCcCCCc
Confidence 678999999999776
No 222
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=24.33 E-value=24 Score=30.04 Aligned_cols=31 Identities=23% Similarity=0.477 Sum_probs=22.0
Q ss_pred cccccccccccCChhhhhhhhhcCCCCCCccccccchhh
Q 045316 406 TYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAA 444 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f 444 (568)
.|.|..|+..+ .+|.++ ....|.|..|+-.+
T Consensus 123 ~~~C~~C~~~~------~r~~~~--~~~~~~C~~C~~~l 153 (157)
T PF10263_consen 123 VYRCPSCGREY------KRHRRS--KRKRYRCGRCGGPL 153 (157)
T ss_pred EEEcCCCCCEe------eeeccc--chhhEECCCCCCEE
Confidence 58999999887 345444 33459998887554
No 223
>PRK00420 hypothetical protein; Validated
Probab=24.15 E-value=44 Score=26.47 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.0
Q ss_pred ceeCCccccccCc
Q 045316 482 EHKCNICNKIFPT 494 (568)
Q Consensus 482 ~f~C~~C~k~F~~ 494 (568)
...|+.||....-
T Consensus 40 ~~~Cp~Cg~~~~v 52 (112)
T PRK00420 40 EVVCPVHGKVYIV 52 (112)
T ss_pred ceECCCCCCeeee
Confidence 6789999986553
No 224
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.04 E-value=41 Score=31.46 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=19.5
Q ss_pred CcccccccccccCChhhhhhhhhcCCCCCCccccccc
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSA 441 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~ 441 (568)
-||.|.+|.+.|.+.- -+.-+-|.|.+|.
T Consensus 240 ~Pf~c~icr~~f~~pV--------vt~c~h~fc~~ca 268 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPV--------VTKCGHYFCEVCA 268 (313)
T ss_pred CCccccccccccccch--------hhcCCceeehhhh
Confidence 4799999999998652 2333446665553
No 225
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.54 E-value=32 Score=22.79 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=16.7
Q ss_pred CcccccccccccCChhhhhhhhhcCC
Q 045316 405 QTYSCLICNKSFDKHQALGGHVASHN 430 (568)
Q Consensus 405 k~~~C~~C~k~F~~~~~L~~H~~~H~ 430 (568)
..|.|+.|+..|=---.+-.|...|.
T Consensus 20 ~~y~C~~C~~~FC~dCD~fiHE~LH~ 45 (51)
T PF07975_consen 20 SRYRCPKCKNHFCIDCDVFIHETLHN 45 (51)
T ss_dssp EEE--TTTT--B-HHHHHTTTTTS-S
T ss_pred CeEECCCCCCccccCcChhhhccccC
Confidence 46999999999998888888877664
No 226
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=23.28 E-value=52 Score=34.13 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=26.0
Q ss_pred CCCCccccccccccCCchhHHHHHHHhcc
Q 045316 91 LGLPRTCSECGKQFTSGKALGGHKRACLQ 119 (568)
Q Consensus 91 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~ 119 (568)
...+..|..||++|........||..|..
T Consensus 415 ~~~pnqC~~CG~R~~~~ee~sk~md~H~d 443 (579)
T KOG2071|consen 415 KDSPNQCKSCGLRFDDSEERSKHMDIHDD 443 (579)
T ss_pred cCCcchhcccccccccchhhhhHhhhhhh
Confidence 46789999999999999999999998864
No 227
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=22.95 E-value=39 Score=32.19 Aligned_cols=27 Identities=15% Similarity=0.413 Sum_probs=22.7
Q ss_pred ccCCCCcccccccc-cccCChhhhhhhh
Q 045316 400 VMSTAQTYSCLICN-KSFDKHQALGGHV 426 (568)
Q Consensus 400 ~h~~~k~~~C~~C~-k~F~~~~~L~~H~ 426 (568)
.|--.+.|.|++|| +++..+..+.+|-
T Consensus 368 lhgLd~ef~CEICgNyvy~GR~~FdrHF 395 (470)
T COG5188 368 LHGLDIEFECEICGNYVYYGRDRFDRHF 395 (470)
T ss_pred hcCCCcceeeeecccccccchHHHHhhh
Confidence 46667789999999 8898888888885
No 228
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=22.78 E-value=45 Score=22.72 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=5.5
Q ss_pred cccccccccccC
Q 045316 406 TYSCLICNKSFD 417 (568)
Q Consensus 406 ~~~C~~C~k~F~ 417 (568)
.+.|++..+.|.
T Consensus 11 ~~~CPiT~~~~~ 22 (57)
T PF11789_consen 11 SLKCPITLQPFE 22 (57)
T ss_dssp -SB-TTTSSB-S
T ss_pred ccCCCCcCChhh
Confidence 466666666553
No 229
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=22.18 E-value=32 Score=32.12 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.5
Q ss_pred CceeCCccccccCcccccccccccC
Q 045316 481 SEHKCNICNKIFPTGQALGGHKRCH 505 (568)
Q Consensus 481 k~f~C~~C~k~F~~~~~L~~H~r~H 505 (568)
..|+|+.|...|-.--+.-.|...|
T Consensus 387 ~rY~Ce~CK~~FC~dCdvfiHe~Lh 411 (421)
T COG5151 387 GRYQCELCKSTFCSDCDVFIHETLH 411 (421)
T ss_pred cceechhhhhhhhhhhHHHHHHHHh
Confidence 4799999999999999988998887
No 230
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=22.15 E-value=4.6e+02 Score=26.37 Aligned_cols=73 Identities=10% Similarity=-0.109 Sum_probs=51.4
Q ss_pred ccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCCcccccc
Q 045316 413 NKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCNICNKIF 492 (568)
Q Consensus 413 ~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~~C~k~F 492 (568)
...+.....+..|...|++..++-++++.+.|..+-. +..|...+.++.++.+..+...+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~ 369 (396)
T KOG2461|consen 310 RLSLPKQLVLDQSEVPATVSVWTGETIPVRTPAGQLI--------------------YTQSHSMEVAEPTDMAPNQIWKI 369 (396)
T ss_pred CcccccccccccccccccccccCcCcccccccccccc--------------------hhhhhhcccCCCCcccccccccc
Confidence 4455556667778888888888877777777776665 66677777777777777766666
Q ss_pred CcccccccccccC
Q 045316 493 PTGQALGGHKRCH 505 (568)
Q Consensus 493 ~~~~~L~~H~r~H 505 (568)
.....+..+..+|
T Consensus 370 ~~~~~~~~~~~~~ 382 (396)
T KOG2461|consen 370 YHTGVLGFLIITT 382 (396)
T ss_pred eeccccceeeeec
Confidence 6666666666665
No 231
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.09 E-value=30 Score=22.22 Aligned_cols=18 Identities=22% Similarity=0.573 Sum_probs=13.9
Q ss_pred ccccccccccCCchhHHH
Q 045316 95 RTCSECGKQFTSGKALGG 112 (568)
Q Consensus 95 ~~C~~C~k~F~~~~~L~~ 112 (568)
-.|+.|++-|.+...+.+
T Consensus 13 KICpvCqRPFsWRkKW~~ 30 (54)
T COG4338 13 KICPVCQRPFSWRKKWAR 30 (54)
T ss_pred hhhhhhcCchHHHHHHHH
Confidence 469999999988766654
No 232
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=21.81 E-value=56 Score=37.41 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=8.5
Q ss_pred cccccccccccC
Q 045316 406 TYSCLICNKSFD 417 (568)
Q Consensus 406 ~~~C~~C~k~F~ 417 (568)
.|.|+.||....
T Consensus 692 vy~CPsCGaev~ 703 (1337)
T PRK14714 692 VYVCPDCGAEVP 703 (1337)
T ss_pred ceeCccCCCccC
Confidence 377888888644
No 233
>PF11931 DUF3449: Domain of unknown function (DUF3449); InterPro: IPR024598 This presumed domain is functionally uncharacterised. It has two conserved sequence motifs: PIP and CEICG and contains a zinc-finger of the C2H2-type.; PDB: 4DGW_A.
Probab=21.55 E-value=31 Score=30.42 Aligned_cols=25 Identities=32% Similarity=0.713 Sum_probs=0.0
Q ss_pred CCCCccccccc-cccCCchhHHHHHH
Q 045316 91 LGLPRTCSECG-KQFTSGKALGGHKR 115 (568)
Q Consensus 91 ~~~~~~C~~C~-k~F~~~~~L~~H~~ 115 (568)
....|.|.+|| .+|.-+..+.+|..
T Consensus 98 L~~ey~CEICGN~~Y~GrkaFekHF~ 123 (196)
T PF11931_consen 98 LGVEYKCEICGNQSYKGRKAFEKHFQ 123 (196)
T ss_dssp --------------------------
T ss_pred CCCeeeeEeCCCcceecHHHHHHhcC
Confidence 56889999997 57888999999987
No 234
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=21.45 E-value=37 Score=29.38 Aligned_cols=18 Identities=28% Similarity=0.519 Sum_probs=15.0
Q ss_pred CCCCCccccccccccCCc
Q 045316 90 VLGLPRTCSECGKQFTSG 107 (568)
Q Consensus 90 ~~~~~~~C~~C~k~F~~~ 107 (568)
...-||.|.+|.+.|.++
T Consensus 192 ~e~IPF~C~iCKkdy~sp 209 (259)
T COG5152 192 GEKIPFLCGICKKDYESP 209 (259)
T ss_pred CCCCceeehhchhhccch
Confidence 345689999999999876
No 235
>PRK00762 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.44 E-value=46 Score=27.07 Aligned_cols=34 Identities=9% Similarity=0.055 Sum_probs=20.1
Q ss_pred CCCcccccccccccCChhhhhhhhhcCCCCCCccccccch
Q 045316 403 TAQTYSCLICNKSFDKHQALGGHVASHNKNKNVKESSSAS 442 (568)
Q Consensus 403 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~ 442 (568)
-+-.+.| .||..|.....-..|. .-.+.||.||.
T Consensus 67 vp~~~~C-~Cg~~~~~~~~~~~~~-----~~~~~CP~Cgs 100 (124)
T PRK00762 67 IPVEIEC-ECGYEGVVDEDEIDHY-----AAVIECPVCGN 100 (124)
T ss_pred cCeeEEe-eCcCcccccccchhcc-----ccCCcCcCCCC
Confidence 3446899 9999987653211111 01367999983
No 236
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.43 E-value=34 Score=22.92 Aligned_cols=12 Identities=17% Similarity=0.639 Sum_probs=6.6
Q ss_pred eCCccccccCcc
Q 045316 484 KCNICNKIFPTG 495 (568)
Q Consensus 484 ~C~~C~k~F~~~ 495 (568)
.|++|++.|...
T Consensus 22 ~CPlC~r~l~~e 33 (54)
T PF04423_consen 22 CCPLCGRPLDEE 33 (54)
T ss_dssp E-TTT--EE-HH
T ss_pred cCCCCCCCCCHH
Confidence 899999999753
No 237
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=21.34 E-value=33 Score=22.28 Aligned_cols=13 Identities=23% Similarity=0.703 Sum_probs=8.8
Q ss_pred ccccccccccCCc
Q 045316 95 RTCSECGKQFTSG 107 (568)
Q Consensus 95 ~~C~~C~k~F~~~ 107 (568)
|+|.+||..|.-.
T Consensus 2 y~C~~CgyvYd~~ 14 (47)
T PF00301_consen 2 YQCPVCGYVYDPE 14 (47)
T ss_dssp EEETTTSBEEETT
T ss_pred cCCCCCCEEEcCC
Confidence 6777777777544
No 238
>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....
Probab=21.16 E-value=21 Score=22.20 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=12.6
Q ss_pred HHHhcCCCCCceeCCccccc
Q 045316 472 AAAAGGGGSSEHKCNICNKI 491 (568)
Q Consensus 472 ~H~~~H~~~k~f~C~~C~k~ 491 (568)
-.+.+..+.+.+.|.+|+..
T Consensus 14 p~~~~~~~~~~w~C~~C~~~ 33 (40)
T PF04810_consen 14 PFCQFDDGGKTWICNFCGTK 33 (40)
T ss_dssp TTSEEETTTTEEEETTT--E
T ss_pred CcceEcCCCCEEECcCCCCc
Confidence 33445556678999999875
No 239
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.10 E-value=40 Score=33.58 Aligned_cols=31 Identities=10% Similarity=0.111 Sum_probs=24.1
Q ss_pred chhhHhHhhcchHHHHHHHHHhhccccCCCCCCCccccccccccCCchh
Q 045316 61 AAEADDRQFMEEDLLLQREQEQDQQDRGGVLGLPRTCSECGKQFTSGKA 109 (568)
Q Consensus 61 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~~~~~C~~C~k~F~~~~~ 109 (568)
.|+.|+....+. |.+-|+|+.||+.+.....
T Consensus 352 ~Cp~Cg~~m~S~------------------G~~g~rC~kCg~~~~~~~~ 382 (421)
T COG1571 352 VCPRCGGRMKSA------------------GRNGFRCKKCGTRARETLI 382 (421)
T ss_pred CCCccCCchhhc------------------CCCCcccccccccCCcccc
Confidence 789999876654 4458999999999987643
No 240
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=21.09 E-value=75 Score=30.46 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=24.5
Q ss_pred CCCccccccccccCCchhHHHHHHHhccccC
Q 045316 92 GLPRTCSECGKQFTSGKALGGHKRACLQKIK 122 (568)
Q Consensus 92 ~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~ 122 (568)
...|.|++|++.=.+...|..|+..-+-+-+
T Consensus 77 ~qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~ 107 (381)
T KOG1280|consen 77 PQSFTCPYCGIMGFTERQFGTHVLSQHPEAS 107 (381)
T ss_pred cccccCCcccccccchhHHHHHhhhcCcccC
Confidence 4579999999988899999999986444443
No 241
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=21.07 E-value=29 Score=26.10 Aligned_cols=12 Identities=25% Similarity=0.647 Sum_probs=8.4
Q ss_pred cccccccccccC
Q 045316 155 HICYVCHQSFRS 166 (568)
Q Consensus 155 ~~C~~C~k~F~~ 166 (568)
+.|..|++.|.-
T Consensus 54 W~C~~C~~~~AG 65 (90)
T PF01780_consen 54 WKCKKCGKKFAG 65 (90)
T ss_dssp EEETTTTEEEE-
T ss_pred eecCCCCCEEeC
Confidence 778888877753
No 242
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=20.98 E-value=62 Score=34.64 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=24.0
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCccccccchhh-hccCc
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAA-AEDSK 449 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f-~~~~~ 449 (568)
-.|..|++.|.....+. +.|.+.|..||..| ..|+.
T Consensus 461 dtC~~C~kkFfSlsK~L-------~~RKHHCRkCGrVFC~~CSS 497 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPL-------GTRAHHCRSCGIRLCVFCIT 497 (1374)
T ss_pred CcccCcCCccccccccc-------ccccccccCCccccCccccC
Confidence 56999999997652111 34567799998754 44554
No 243
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=20.40 E-value=54 Score=27.87 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=18.1
Q ss_pred CCCccccccccccCCchhHHHHHH
Q 045316 92 GLPRTCSECGKQFTSGKALGGHKR 115 (568)
Q Consensus 92 ~~~~~C~~C~k~F~~~~~L~~H~~ 115 (568)
..-|.|+.||+.|---+.+.+=.+
T Consensus 128 ~~f~~C~~CgkiYW~GsHw~~m~~ 151 (165)
T COG1656 128 EEFYRCPKCGKIYWKGSHWRRMVE 151 (165)
T ss_pred cceeECCCCcccccCchHHHHHHH
Confidence 467889999999987776665444
No 244
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.22 E-value=47 Score=36.22 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=0.0
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCccccccchhhhccCchhhhhhhhhcccccccchHHHHHHHhcCCCCCceeCC
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSSASAAAEDSKGEDKLAAAASDEETGESSRELAAAAAGGGGSSEHKCN 486 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~~~f~~~~~~f~~~~~l~~h~~~~~~~~~L~~H~~~H~~~k~f~C~ 486 (568)
..|..||..+.-..-=. -+..|.......|..||+.... |..|+
T Consensus 382 ~~C~~Cg~~~~C~~C~~-~l~~h~~~~~l~Ch~Cg~~~~~-----------------------------------~~~Cp 425 (679)
T PRK05580 382 LLCRDCGWVAECPHCDA-SLTLHRFQRRLRCHHCGYQEPI-----------------------------------PKACP 425 (679)
T ss_pred eEhhhCcCccCCCCCCC-ceeEECCCCeEECCCCcCCCCC-----------------------------------CCCCC
Q ss_pred ccc
Q 045316 487 ICN 489 (568)
Q Consensus 487 ~C~ 489 (568)
.||
T Consensus 426 ~Cg 428 (679)
T PRK05580 426 ECG 428 (679)
T ss_pred CCc
No 245
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.18 E-value=59 Score=21.80 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=18.0
Q ss_pred ccccccccccCChhhhhhhhhcCCCCCCcccccc
Q 045316 407 YSCLICNKSFDKHQALGGHVASHNKNKNVKESSS 440 (568)
Q Consensus 407 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C 440 (568)
++|+.||-.|...-..+. .+...|+.|
T Consensus 29 W~C~~Cgh~w~~~v~~R~-------~~~~~CP~C 55 (55)
T PF14311_consen 29 WKCPKCGHEWKASVNDRT-------RRGKGCPYC 55 (55)
T ss_pred EECCCCCCeeEccHhhhc-------cCCCCCCCC
Confidence 899999998877655443 234456555
No 246
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=20.16 E-value=29 Score=30.42 Aligned_cols=35 Identities=11% Similarity=0.189 Sum_probs=23.0
Q ss_pred cccccccccccCChhhhhhhhhc----CCCC---CCccccccchhhhc
Q 045316 406 TYSCLICNKSFDKHQALGGHVAS----HNKN---KNVKESSSASAAAE 446 (568)
Q Consensus 406 ~~~C~~C~k~F~~~~~L~~H~~~----H~~~---k~~~C~~C~~~f~~ 446 (568)
.-.|++||. .|..|++. |.|+ -.+.|..||+.+..
T Consensus 14 ~~~CPvCg~------~l~~~~~~~~IPyFG~V~i~t~~C~~CgYR~~D 55 (201)
T COG1779 14 RIDCPVCGG------TLKAHMYLYDIPYFGEVLISTGVCERCGYRSTD 55 (201)
T ss_pred eecCCcccc------eeeEEEeeecCCccceEEEEEEEccccCCcccc
Confidence 367999998 55667654 3343 23688888876643
No 247
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=20.14 E-value=34 Score=25.97 Aligned_cols=15 Identities=27% Similarity=0.786 Sum_probs=12.5
Q ss_pred cccccccccccCchh
Q 045316 155 HICYVCHQSFRSVKS 169 (568)
Q Consensus 155 ~~C~~C~k~F~~~~~ 169 (568)
-.|.+|+.+|.+..+
T Consensus 48 ~sC~iC~esFqt~it 62 (109)
T KOG3214|consen 48 ASCRICEESFQTTIT 62 (109)
T ss_pred eeeeehhhhhccchH
Confidence 779999999987654
Done!