BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045317
(460 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From
Saccharomyces Cerevisiae
Length = 296
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 96/214 (44%), Gaps = 8/214 (3%)
Query: 128 DIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQED---GLDPDVGKLV--YSNCK 182
D LL+FL+A+ + V A EM KWR+DY D I +D P + K Y +
Sbjct: 52 DSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKT 111
Query: 183 DREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELNFKPGG-ANSI 241
D++GRP+Y+ GA E+ K+ E + + ++ + + G +
Sbjct: 112 DKDGRPVYFEELGAVNLHEM-NKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETS 170
Query: 242 VQIIDLKNSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINVPFWYYAFHTVASKFLS 301
I+DLK ++ + Q+ YPE M + IIN PF + + FL
Sbjct: 171 CTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLD 230
Query: 302 PRCKRKFVFARPAKVTKTLLKFISPENLPVEYGG 335
P K +F + K LLK I ENLPV++GG
Sbjct: 231 PVTVSK-IFILGSSYQKELLKQIPAENLPVKFGG 263
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylethanolamine
pdb|3B7N|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylinositol
pdb|3B7Q|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Q|B Chain B, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine
pdb|3B7Z|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex
With Phosphatidylcholine Or Phosphatidylinositol
Length = 320
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 17/235 (7%)
Query: 128 DIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQED------GLDPDVGKLV---- 177
D LL+FL+A+ + ++ + EM +T +WR +Y A+ I ED D + KL
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 178 -YSNCKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELNFKPG 236
Y + D++GRPLY+ G +++ K + + L + E+ F + + + G
Sbjct: 121 QYYHHVDKDGRPLYFEELGGINLKKMYKITTEKQMLRNLVKEYEL-FATYRVPACSRRAG 179
Query: 237 G-ANSIVQIIDLKNSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINVPFWYYAFHTV 295
+ ++DLK + K + Q+ YPE M + II+ PF + +
Sbjct: 180 YLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239
Query: 296 ASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGG---LYRENDDFFPED 347
FL P K +F + K LLK I ENLPV+YGG L+ ND F+ D
Sbjct: 240 VKPFLDPVTVSK-IFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFYYSD 293
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer
Protein From A Pseudo-Sec14 Scaffold By Directed
Evolution
Length = 320
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 109/235 (46%), Gaps = 17/235 (7%)
Query: 128 DIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQED------GLDPDVGKLV---- 177
D LL+FL+A+ + ++ + EM +T +WR +Y A+ I ED D + KL
Sbjct: 61 DSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYP 120
Query: 178 -YSNCKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELNFKPG 236
Y + D++GRPLY+ G +++ K + + L + E+ F + + + G
Sbjct: 121 QYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYEL-FATYRVPACSRRAG 179
Query: 237 G-ANSIVQIIDLKNSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINVPFWYYAFHTV 295
+ ++DLK + K + Q+ YPE M + II+ PF + +
Sbjct: 180 YLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKM 239
Query: 296 ASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGG---LYRENDDFFPED 347
FL P K +F + K LLK I ENLPV+YGG L+ ND F+ D
Sbjct: 240 VKPFLDPVTVSK-IFILGSSYKKELLKQIPIENLPVKYGGTSVLHNPNDKFYYSD 293
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
pdb|4FMM|B Chain B, Dimeric Sec14 Family Homolog 3 From Saccharomyces
Cerevisiae Presents Some Novel Features Of Structure
That Lead To A Surprising "dimer- Monomer" State Change
Induced By Substrate Binding
Length = 360
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 45/225 (20%)
Query: 131 LLKFLKAKDYKVHDAFEMLRKTLKWRRDY-LADLIQEDG---------LDPDVGKLVYSN 180
L++L+A + + D + + TL WRR++ ++ L +E G ++ + GK V
Sbjct: 90 FLRYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILG 149
Query: 181 CKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELNFKPGGANS 240
++ + RP+ Y G + +++ L + ++ I +F P G +S
Sbjct: 150 YEN-DARPILYLKPGRQNTKTSHRQVQHLVFMLERVI--------------DFMPAGQDS 194
Query: 241 IVQIIDLK----------NSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINVPFWYY 290
+ +ID K NSK P I V K+ + +LQ +YPE + + ++ N+P+ +
Sbjct: 195 LALLIDFKDYPDVPKVPGNSKIPPIG----VGKEVLHILQTHYPERLGKALLTNIPWLAW 250
Query: 291 AFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGG 335
F + F+ P + K VF P +K++ L YGG
Sbjct: 251 TFLKLIHPFIDPLTREKLVFDEP------FVKYVPKNELDSLYGG 289
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
pdb|1OLM|C Chain C, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 21/235 (8%)
Query: 116 VPLLPSKAHEGTDIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQEDGLDPDVGK 175
+P LP+ D LL++L+A+ + + + MLRK +++R+ D I P+V +
Sbjct: 27 LPALPNP----DDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQ 81
Query: 176 LVYSN--CK-DREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELN 232
S C D +G P++Y++ G + L +DL +R E + + +
Sbjct: 82 QYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFS-ASKQDLLRTKMR-ECELLLQECAHQT 139
Query: 233 FKPGGANSIVQII------DLKNSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINVP 286
K G + II LK+ P ++ + + + M ++NYPE + R ++ P
Sbjct: 140 TKLGRKVETITIIYDCEGLGLKHLWKPAVEAY----GEFLCMFEENYPETLKRLFVVKAP 195
Query: 287 FWYYAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYREND 341
+ + + FLS ++K + A + LLK ISP+ +PVEYGG + D
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKK-IMVLGANWKEVLLKHISPDQVPVEYGGTMTDPD 249
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With
Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized
Vitamin E And Cholesterol Biosynthesis
Length = 403
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 109/235 (46%), Gaps = 21/235 (8%)
Query: 116 VPLLPSKAHEGTDIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQEDGLDPDVGK 175
+P LP+ D LL++L+A+ + + + MLRK +++R+ D I P+V +
Sbjct: 27 LPALPNP----DDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQ 81
Query: 176 LVYSN--CK-DREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELN 232
S C D +G P++Y++ G + L +DL +R E + + +
Sbjct: 82 QYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFS-ASKQDLLRTKMR-ECELLLQECAHQT 139
Query: 233 FKPGGANSIVQII------DLKNSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINVP 286
K G + II LK+ P ++ + + + M ++NYPE + R ++ P
Sbjct: 140 TKLGRKVETITIIYDCEGLGLKHLWKPAVEAY----GEFLCMFEENYPETLKRLFVVKAP 195
Query: 287 FWYYAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYREND 341
+ + + FLS ++K + A + LLK ISP+ +PVEYGG + D
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKK-IMVLGANWKEVLLKHISPDQVPVEYGGTMTDPD 249
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|C Chain C, The Crystal Structure Of Human Supernatant Protein Factor
pdb|1O6U|E Chain E, The Crystal Structure Of Human Supernatant Protein Factor
Length = 403
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 106/235 (45%), Gaps = 21/235 (8%)
Query: 116 VPLLPSKAHEGTDIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQEDGLDPDVGK 175
+P LP+ D LL++L+A+ + + + LRK +++R+ D I P+V +
Sbjct: 27 LPALPNP----DDYFLLRWLRARSFDLQKSEAXLRKHVEFRKQKDIDNIIS-WQPPEVIQ 81
Query: 176 LVYSN--CK-DREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELN 232
S C D +G P++Y++ G + L +DL R E + + +
Sbjct: 82 QYLSGGXCGYDLDGCPVWYDIIGPLDAKGLLFS-ASKQDLLRTKXR-ECELLLQECAHQT 139
Query: 233 FKPGGANSIVQII------DLKNSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINVP 286
K G + II LK+ P ++ + + + ++NYPE + R ++ P
Sbjct: 140 TKLGRKVETITIIYDCEGLGLKHLWKPAVEAY----GEFLCXFEENYPETLKRLFVVKAP 195
Query: 287 FWYYAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYREND 341
+ + + FLS ++K + A + LLK ISP+ +PVEYGG + D
Sbjct: 196 KLFPVAYNLIKPFLSEDTRKK-IXVLGANWKEVLLKHISPDQVPVEYGGTXTDPD 249
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-tocopherol Transfer Protein
pdb|1OIZ|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
pdb|1OIZ|B Chain B, The Molecular Basis Of Vitamin E Retention: Structure Of
Human Alpha-Tocopherol Transfer Protein
Length = 278
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 30/230 (13%)
Query: 115 GVPLLPSKAHEGTDIVLLKFLKAKDYKVHDAFEMLRKTLKWRRD---YLADLIQED--GL 169
GVPL P TD LL+FL+A+D+ + A+ +L+ KWR + ADL GL
Sbjct: 39 GVPLAPLPL---TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGL 95
Query: 170 DPDVGKLVYSNCKDREG-RPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGI 228
G +D G + L Y + + + + + I EV+ GI
Sbjct: 96 L-KAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGI 154
Query: 229 KELNFKPGGANSIVQIIDLKNSKPPDIKKFRV---VSKKTVMMLQDNYPELMHRNIIINV 285
K I DL+ + F++ V+KK +L D++P + +IN
Sbjct: 155 KA-------------IFDLEGWQ--FSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINE 199
Query: 286 PFWYYAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGG 335
P ++A ++ FL+ + K + + ++LL+ P+ LP+EYGG
Sbjct: 200 PVIFHAVFSMIKPFLTEKIKER-IHMHGNNYKQSLLQHF-PDILPLEYGG 247
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer
Protein Bound To Its Ligand
Length = 262
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 105/246 (42%), Gaps = 35/246 (14%)
Query: 115 GVPLLPSKAHEGTDIVLLKFLKAKDYKVHDAFEMLRKTLKWRRD---YLADLIQED--GL 169
GVPL P TD LL+FL+A+D+ + A+ +L+ KWR + ADL GL
Sbjct: 23 GVPLAPLPL---TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPRSIIGL 79
Query: 170 DPDVGKLVYSNCKDREG-RPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGI 228
G +D G + L Y + + + + + I EV+ GI
Sbjct: 80 -LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGI 138
Query: 229 KELNFKPGGANSIVQIIDLKNSKPPDIKKFRV---VSKKTVMMLQDNYPELMHRNIIINV 285
K I DL+ + F++ V+KK +L D++P + +IN
Sbjct: 139 K-------------AIFDLEGWQFS--HAFQITPSVAKKIAAVLTDSFPLKVRGIHLINE 183
Query: 286 PFWYYAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYRENDDFFP 345
P ++A + FL+ + K + + ++LL+ P+ LP+EYGG ++F
Sbjct: 184 PVIFHAVFSXIKPFLTEKIKER-IHXHGNNYKQSLLQHF-PDILPLEYGG-----EEFSX 236
Query: 346 EDRTSE 351
ED E
Sbjct: 237 EDICQE 242
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 25/225 (11%)
Query: 119 LPSKAHEGTDIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQEDGLDPDVGKLVY 178
+ + E L+F++A+ + V A+E+LR + +R Y +L D L P+ +
Sbjct: 83 VAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQY-PELF--DSLSPEAVRCTI 139
Query: 179 S-------NCKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKEL 231
+ +D+ GR V F + + +++ + + K +E ++
Sbjct: 140 EAGYPGVLSSRDKYGR-----VVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQI 194
Query: 232 NFKPGGANSIVQIIDLKNSKPPDIKKFRVVS-KKTVMMLQDNYPELMHRNIIINVPFWYY 290
N I + K R +K V MLQD++P I+ P+++
Sbjct: 195 -------NGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPARFKAIHFIHQPWYFT 247
Query: 291 AFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGG 335
+ V FL + + VF ++ + I LP ++GG
Sbjct: 248 TTYNVVKPFLKSKLLER-VFVHGDDLS-GFYQEIDENILPSDFGG 290
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 25/225 (11%)
Query: 119 LPSKAHEGTDIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQEDGLDPDVGKLVY 178
+ + E L+F++A+ + V A+E+LR + +R Y +L D L P+ +
Sbjct: 83 VAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQY-PELF--DSLSPEAVRCTI 139
Query: 179 S-------NCKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKEL 231
+ +D+ GR V F + + +++ + + K +E ++
Sbjct: 140 EAGYPGVLSSRDKYGR-----VVXLFNIENWQSQEITFDEILQAYCFILEKLLENEETQI 194
Query: 232 NFKPGGANSIVQIIDLKNSKPPDIKKFRVVS-KKTVMMLQDNYPELMHRNIIINVPFWYY 290
N I + K R +K V LQD++P I+ P+++
Sbjct: 195 -------NGFCIIENFKGFTXQQAASLRTSDLRKXVDXLQDSFPAWFKAIHFIHQPWYFT 247
Query: 291 AFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGG 335
+ V FL + + VF ++ + I LP ++GG
Sbjct: 248 TTYNVVKPFLKSKLLER-VFVHGDDLS-GFYQEIDENILPSDFGG 290
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described
In Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase
And Is Described In Remark 400
Length = 2060
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 227 GIKELNFKPGGANSIVQIIDLKNSKP 252
GI+ ++FKPG ++I Q+I++ + P
Sbjct: 692 GIRHISFKPGSVDAIQQVINIAKANP 717
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 89 LGKPPRSHSPKEAALA-RSQLKKITLWGVPLLPSKAHEGTDIVL 131
L K RS +P +A L KK++++GV L +K EG DI+L
Sbjct: 178 LHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIIL 221
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 89 LGKPPRSHSPKEAALA-RSQLKKITLWGVPLLPSKAHEGTDIVL 131
L K RS +P +A L KK++++GV L +K EG DI+L
Sbjct: 161 LHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIIL 204
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 177 VYSNCKDREGRPLYYNVCGAFKNRELPKKLVDLEDL 212
++ KD GR YYN E PK+L+ E+L
Sbjct: 3 IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEEL 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,814,427
Number of Sequences: 62578
Number of extensions: 586029
Number of successful extensions: 1397
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1365
Number of HSP's gapped (non-prelim): 19
length of query: 460
length of database: 14,973,337
effective HSP length: 102
effective length of query: 358
effective length of database: 8,590,381
effective search space: 3075356398
effective search space used: 3075356398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)