Query 045317
Match_columns 460
No_of_seqs 317 out of 1582
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 21:19:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045317.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045317hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1olm_A SEC14-like protein 2; l 100.0 1.1E-70 3.8E-75 565.6 34.4 350 58-453 2-388 (403)
2 3q8g_A CRAL-TRIO domain-contai 100.0 3.3E-48 1.1E-52 385.6 17.1 254 37-341 15-284 (320)
3 1aua_A Phosphatidylinositol tr 100.0 4.1E-47 1.4E-51 374.6 22.4 242 56-341 18-269 (296)
4 1r5l_A Alpha-TTP, protein (alp 100.0 2.4E-44 8.2E-49 348.4 16.3 229 62-339 2-235 (262)
5 3hx3_A Retinaldehyde-binding p 100.0 1.5E-43 5E-48 352.0 16.2 236 58-341 48-296 (316)
6 3pg7_A Neurofibromin; SEC lipi 99.1 2.4E-10 8.3E-15 109.2 8.5 133 175-329 11-144 (256)
7 3peg_A Neurofibromin; SEC14 do 98.8 3.4E-09 1.2E-13 102.8 6.1 133 175-329 30-163 (290)
8 2dam_A ETEA protein; KIAA0887, 81.0 2.8 9.4E-05 30.7 5.2 45 62-150 12-56 (67)
9 1ufz_A Hypothetical protein BA 78.8 9.4 0.00032 29.0 7.5 51 63-152 25-75 (83)
10 2dal_A Protein KIAA0794; FAS a 75.8 4.1 0.00014 29.2 4.7 23 127-149 29-51 (62)
11 1wgl_A TOLL-interacting protei 67.6 4.8 0.00016 28.6 3.4 27 125-151 22-48 (59)
12 2dna_A Unnamed protein product 63.2 14 0.00048 26.9 5.2 27 125-151 31-57 (67)
13 2wnv_A C1Q chain A, complement 58.0 5.8 0.0002 33.0 2.8 19 415-433 35-53 (134)
14 2wnv_C C1Q chain C, complement 57.4 6 0.00021 32.8 2.8 19 415-433 39-57 (131)
15 2bwb_A Ubiquitin-like protein 57.4 19 0.00066 23.9 4.8 26 125-150 19-44 (46)
16 1wr1_B Ubiquitin-like protein 57.4 16 0.00056 25.7 4.6 27 125-151 29-55 (58)
17 2wnv_B C1Q chain B, complement 57.1 6.1 0.00021 33.0 2.8 19 415-433 38-56 (136)
18 3lay_A Zinc resistance-associa 56.1 27 0.00094 30.5 6.9 64 62-159 66-129 (175)
19 3jqw_A COLH protein, collagena 55.8 81 0.0028 25.6 10.1 80 359-450 38-117 (121)
20 2dhy_A CUE domain-containing p 55.1 12 0.0004 27.3 3.6 28 125-152 31-58 (67)
21 2ka3_A Emilin-1; C1Q-like doma 53.4 7.4 0.00025 33.6 2.7 19 415-433 48-66 (162)
22 2di0_A Activating signal coint 47.6 58 0.002 23.9 6.3 27 125-151 26-52 (71)
23 2cio_B Inhibitor of cysteine p 47.5 1E+02 0.0035 24.9 8.7 83 349-436 12-101 (121)
24 1gr3_A Collagen X; extracellul 46.5 11 0.00038 32.4 2.8 19 415-433 64-82 (160)
25 2knz_A Ubiquilin-4; cytoplasm, 45.5 37 0.0013 23.2 4.8 27 125-151 23-49 (53)
26 1oai_A Nuclear RNA export fact 44.3 50 0.0017 23.2 5.4 27 126-152 20-46 (59)
27 2xr4_A Lectin; sugar binding p 43.5 86 0.0029 25.1 7.1 88 300-394 9-99 (116)
28 1o91_A Collagen alpha 1(VIII) 41.1 15 0.00051 32.2 2.8 18 416-433 83-100 (178)
29 1vej_A Riken cDNA 4931431F19; 38.5 29 0.00098 25.8 3.5 27 125-151 41-67 (74)
30 1nqj_A Class 1 collagenase; be 37.5 1.5E+02 0.005 24.0 8.0 31 415-449 88-118 (119)
31 2dah_A Ubiquilin-3; UBA domain 37.0 44 0.0015 23.0 4.1 28 125-152 21-48 (54)
32 1z96_A DNA-damage, UBA-domain 36.8 41 0.0014 21.0 3.7 24 126-149 16-39 (40)
33 2jp7_A MRNA export factor MEX6 35.2 71 0.0024 22.3 5.0 26 126-151 19-44 (57)
34 1v92_A NSFL1 cofactor P47; 3-h 33.5 32 0.0011 22.4 2.9 24 126-149 18-41 (46)
35 2q3l_A Uncharacterized protein 33.1 49 0.0017 26.8 4.6 80 213-303 32-111 (126)
36 1q02_A Sequestosome 1; helical 32.8 39 0.0013 23.1 3.1 22 129-150 27-48 (52)
37 2cp8_A NEXT to BRCA1 gene 1 pr 32.7 56 0.0019 22.6 4.0 27 125-151 21-47 (54)
38 1otr_A Protein CUE2; protein-p 31.8 53 0.0018 22.2 3.7 28 125-152 17-44 (49)
39 4f3j_A Complement C1Q tumor ne 31.2 27 0.00093 29.2 2.8 18 416-433 38-55 (148)
40 3m86_A Amoebiasin-2; cysteine 27.6 2.2E+02 0.0077 22.3 9.1 91 347-448 13-110 (111)
41 2cwb_A Chimera of immunoglobul 26.7 76 0.0026 25.3 4.4 27 125-151 78-104 (108)
42 4dou_A Adiponectin; single-cha 25.5 37 0.0013 34.2 3.0 20 415-434 200-219 (442)
43 1j03_A Putative steroid bindin 24.7 66 0.0023 25.2 3.7 62 11-81 28-92 (102)
44 2dzl_A Protein FAM100B; UBA-li 24.7 68 0.0023 23.0 3.5 24 126-149 30-53 (66)
45 2jy5_A Ubiquilin-1; UBA, alter 24.5 75 0.0025 21.5 3.5 26 125-150 24-49 (52)
46 1wji_A Tudor domain containing 24.5 96 0.0033 22.0 4.2 27 126-152 21-47 (63)
47 3itf_A Periplasmic adaptor pro 24.2 2.1E+02 0.0071 23.9 7.0 58 63-157 45-102 (145)
48 2lu7_A Obscurin-like protein 1 23.5 72 0.0025 23.4 3.7 28 350-377 4-31 (84)
49 1ify_A HHR23A, UV excision rep 22.5 78 0.0027 21.1 3.2 26 126-151 20-45 (49)
50 2h7w_A Chagasin; beta-strands, 22.3 2.6E+02 0.0089 22.8 7.1 90 346-448 29-130 (131)
51 2wra_A Lectin, BCLA; sugar bin 22.0 1.7E+02 0.0059 23.6 5.6 85 300-392 15-109 (128)
52 4dou_A Adiponectin; single-cha 21.3 50 0.0017 33.2 3.0 19 415-433 59-77 (442)
53 3dct_B Nuclear receptor coacti 20.9 52 0.0018 17.7 1.6 14 126-139 3-16 (21)
54 2g3q_A Protein YBL047C; endocy 20.9 99 0.0034 19.7 3.4 26 126-151 16-41 (43)
55 3e21_A HFAF1, FAS-associated f 20.1 64 0.0022 21.4 2.3 22 127-148 19-41 (45)
No 1
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=100.00 E-value=1.1e-70 Score=565.58 Aligned_cols=350 Identities=22% Similarity=0.361 Sum_probs=298.4
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccCCCCCCCCCCCCHHHHHHHHHh
Q 045317 58 AAAIIDMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGVPLLPSKAHEGTDIVLLKFLKA 137 (460)
Q Consensus 58 ~~~~~~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~lp~~~~~~~D~~LLRFLra 137 (460)
+|++++|++.|+++|++||+++.+.. +++| ..+|.+|||||||
T Consensus 2 ~g~~~~l~~~q~~~l~~lr~~l~~~~---------------------------------~~l~----~~dD~~LlRFLra 44 (403)
T 1olm_A 2 SGRVGDLSPRQKEALAKFRENVQDVL---------------------------------PALP----NPDDYFLLRWLRA 44 (403)
T ss_dssp CSBTTBCCHHHHHHHHHHHHHHGGGG---------------------------------GGSS----CCCHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHHHhhc---------------------------------cCCC----CCChhHHHHHHHh
Confidence 69999999999999999999998741 2244 5799999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCccccCCCccc-ccc--ceeeeccCCCCCeEEEEecCCCCCCCCccccccchhhHH
Q 045317 138 KDYKVHDAFEMLRKTLKWRRDYLADLIQEDGLDPD-VGK--LVYSNCKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCD 214 (460)
Q Consensus 138 rkfdv~kA~~~l~~~l~wR~~~~~d~i~~~~~~~e-l~~--~~~~~G~Dk~GrpV~i~~~g~~d~~~l~~~~~~~~~~~~ 214 (460)
|+||+++|.+||+++++||++++++++.. ...++ +.. ..+++|+|++||||+++++|++|+.++++. .+.+
T Consensus 45 rkfdv~~A~~~l~~~l~wR~~~~~~~i~~-~~~~~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~-----~~~~ 118 (403)
T 1olm_A 45 RSFDLQKSEAMLRKHVEFRKQKDIDNIIS-WQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFS-----ASKQ 118 (403)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTGGGGGG-SCCCHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTT-----SCHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCcccc-cCCHHHHHHhCCceeeccCCCcCEEEEEecCCCChHHhhcc-----CCHH
Confidence 99999999999999999999999988875 33333 221 235789999999999999999998776543 2468
Q ss_pred HHHHHHHHHHHHHHHHhccC----CCCcceeEEEEeCCCCCCCCchh-HHHHHHHHHHHHhhhcccccceEEEEeCChhH
Q 045317 215 QFIRLEVKFMEKGIKELNFK----PGGANSIVQIIDLKNSKPPDIKK-FRVVSKKTVMMLQDNYPELMHRNIIINVPFWY 289 (460)
Q Consensus 215 ~~~r~~~~~~E~~~~~~~~~----~~~v~~~v~I~Dl~g~s~~~~~~-~~~~~k~~~~~lq~~YPerL~~i~IIN~P~~f 289 (460)
+++++.++++|.+++.+..+ +.+++++++|+||+|+++.++.. ..++++.++.++|+|||+||+++||||+|++|
T Consensus 119 ~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f 198 (403)
T 1olm_A 119 DLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLF 198 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHH
Confidence 99999999999999876543 22579999999999998766543 34688999999999999999999999999999
Q ss_pred HHHHHHHhhcCChhhcccEEEeCCccchHhHhccCCCCCCcccCCCccCCCC--C-CCC------------------Ccc
Q 045317 290 YAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYREND--D-FFP------------------EDR 348 (460)
Q Consensus 290 ~~~w~lvkpfL~~~t~~KI~~~~~~~~~~~L~e~Id~d~LP~~yGG~~~~~d--~-~~~------------------~d~ 348 (460)
.++|+++||||+++|++||+|+++ ++.++|.++||+++||++|||++++++ | |+. .+.
T Consensus 199 ~~i~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~I~~~~LP~~yGG~~~~~~~~~~c~~~i~~gg~vp~~~~~~~~~~~~ 277 (403)
T 1olm_A 199 PVAYNLIKPFLSEDTRKKIMVLGA-NWKEVLLKHISPDQVPVEYGGTMTDPDGNPKCKSKINYGGDIPRKYYVRDQVKQQ 277 (403)
T ss_dssp HHHHHHHGGGSCHHHHHTEEECCT-THHHHHTTTSCGGGSBGGGTSSBCCTTCCTTCTTTCBCCCCCCGGGCSCSSCCCC
T ss_pred HHHHHHHHhhcCHhhhceEEEECh-hHHHHHHhhcChhhCchhhCCCcCCCCCCcccccccccCCCCCcccccCCCcccc
Confidence 999999999999999999999985 778899999999999999999998864 3 431 112
Q ss_pred c-hhhhhccCCcceeeeeecCCCceEEEEEEeecceeEEEEEEEeCC-----CCCeEEEEeccccccCCCCcccccEEEe
Q 045317 349 T-SELIVRKNTAGSVRIPVAETGVTMMWDLTVLGWDVSYKEEFIPDD-----EGSYRVLLQSEKEKKGGEGESMRNSFYI 422 (460)
Q Consensus 349 ~-~~~~V~~g~~~~v~~~v~~~g~~l~W~f~t~~~DI~Fgi~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~g~~~~ 422 (460)
. ++++|++|++++|+++|..+|++|+|+|+|+++||+|||+|.+.. .+++++|+|..| ..++..+++|+++|
T Consensus 278 ~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~~~~~DI~F~v~~~~~~~~~~~~~~~~~v~p~~r--~~~~~~~~~G~~~~ 355 (403)
T 1olm_A 278 YEHSVQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLPNQR--YNSHLVPEDGTLTC 355 (403)
T ss_dssp CSEEEEECTTCEEEEEEEECSTTCEEEEEEEESSSCEEEEEEEC----CCCCGGGSEEEEEEEE--ECTTTSCEEEEEEC
T ss_pred cceEEEEcCCCEEEEEEEEcCCCCEEEEEEEecCCcEEEEEEEecccccccCCCcceEEeeeee--ecCccccccCEEEc
Confidence 2 459999999999999999999999999999999999999998532 255788888777 44455778999999
Q ss_pred CcCcEEEEEEECCC--ccceEEEEEEEEecCcc
Q 045317 423 SEPGKIVITIDNVT--LKNKRVYYRFKTKPAVP 453 (460)
Q Consensus 423 ~~~G~y~l~fdNs~--~~~K~v~Y~i~v~~~~~ 453 (460)
++||+|+|+|||+| +++|+|+|+|+|++|+.
T Consensus 356 ~~~G~y~l~fdNs~S~~~~k~l~y~v~v~~~~~ 388 (403)
T 1olm_A 356 SDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDK 388 (403)
T ss_dssp CSCEEEEEEEECTTCCCCSEEEEEEEEEECCCH
T ss_pred CCCeEEEEEEeccccceeceEEEEEEEEeCCcc
Confidence 99999999999999 59999999999999874
No 2
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=100.00 E-value=3.3e-48 Score=385.61 Aligned_cols=254 Identities=26% Similarity=0.381 Sum_probs=211.5
Q ss_pred cccccccccCCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccC
Q 045317 37 VHKTFTSQENPEHVQEDGNREAAAIIDMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGV 116 (460)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 116 (460)
+.++|++.+.++ ..+|++++||++|+++|++||+.+++.
T Consensus 15 ~~~~~~~~~~~~-------~~~g~~~~lt~~q~~~l~~lR~~l~~~---------------------------------- 53 (320)
T 3q8g_A 15 ILDTYPQICSPN-------ALPGTPGNLTKEQEEALLQFRSILLEK---------------------------------- 53 (320)
T ss_dssp GGGGSCCSCCTT-------SCTTSTTCCCHHHHHHHHHHHHHHHHT----------------------------------
T ss_pred HhhcCCCCCCCC-------CCCCCCCCCCHHHHHHHHHHHHHHHhc----------------------------------
Confidence 455666555444 569999999999999999999999984
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCccccCCCcc---------ccc--cceeeeccCCC
Q 045317 117 PLLPSKAHEGTDIVLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLADLIQEDGLDP---------DVG--KLVYSNCKDRE 185 (460)
Q Consensus 117 ~~lp~~~~~~~D~~LLRFLrarkfdv~kA~~~l~~~l~wR~~~~~d~i~~~~~~~---------el~--~~~~~~G~Dk~ 185 (460)
+ ++. ..||.+||||||||+||+++|.+||+++++||++++++++..+...+ .+. ...|++|+|++
T Consensus 54 ~-~~~---~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~ 129 (320)
T 3q8g_A 54 N-YKE---RLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKD 129 (320)
T ss_dssp T-CCS---SCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTT
T ss_pred C-CCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCC
Confidence 1 122 67999999999999999999999999999999999998876432111 122 24678999999
Q ss_pred CCeEEEEecCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHh----ccC-CCCcceeEEEEeCCCCCCCCchhHHH
Q 045317 186 GRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKEL----NFK-PGGANSIVQIIDLKNSKPPDIKKFRV 260 (460)
Q Consensus 186 GrpV~i~~~g~~d~~~l~~~~~~~~~~~~~~~r~~~~~~E~~~~~~----~~~-~~~v~~~v~I~Dl~g~s~~~~~~~~~ 260 (460)
||||+|+++|++|+.++++.+ +.+++++++++.+|.+++.. ... ...++++++|+||+|+++.++.++.+
T Consensus 130 GRpV~i~r~g~~d~~~l~~~~-----~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~ 204 (320)
T 3q8g_A 130 GRPLYFAELGGINLKKMYKIT-----TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLS 204 (320)
T ss_dssp CCEEEEEECTTCCHHHHHHHC-----CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHH
T ss_pred cCEEEEEeccccCHHHhhccC-----CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHH
Confidence 999999999999987765432 35788999999999886421 111 22478999999999997655554457
Q ss_pred HHHHHHHHHhhhcccccceEEEEeCChhHHHHHHHHhhcCChhhcccEEEeCCccchHhHhccCCCCCCcccCCCccCCC
Q 045317 261 VSKKTVMMLQDNYPELMHRNIIINVPFWYYAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYREN 340 (460)
Q Consensus 261 ~~k~~~~~lq~~YPerL~~i~IIN~P~~f~~~w~lvkpfL~~~t~~KI~~~~~~~~~~~L~e~Id~d~LP~~yGG~~~~~ 340 (460)
+++.++.++|++||+||+++||||+|++|.++|++|||||+++|++||+|+++ ++.++|.++||+++||++|||++++.
T Consensus 205 ~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~ 283 (320)
T 3q8g_A 205 YIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGS-SYKKELLKQIPIENLPVKYGGTSVLH 283 (320)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTEEECCT-THHHHHHHHSCGGGSBGGGTSCBCCS
T ss_pred HHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhEEEeCC-CcHHHHHhhCChhhCChhhCCCCCCC
Confidence 88999999999999999999999999999999999999999999999999985 57899999999999999999999985
Q ss_pred C
Q 045317 341 D 341 (460)
Q Consensus 341 d 341 (460)
+
T Consensus 284 ~ 284 (320)
T 3q8g_A 284 N 284 (320)
T ss_dssp S
T ss_pred C
Confidence 4
No 3
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=100.00 E-value=4.1e-47 Score=374.65 Aligned_cols=242 Identities=29% Similarity=0.390 Sum_probs=206.1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccCCCCCCCCCCCCHHHHHHHH
Q 045317 56 REAAAIIDMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGVPLLPSKAHEGTDIVLLKFL 135 (460)
Q Consensus 56 ~~~~~~~~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~lp~~~~~~~D~~LLRFL 135 (460)
..+|++++|+++|+++|++||+.+.+. + ++. ..+|.+|||||
T Consensus 18 ~~~~~~~~l~~~q~~~l~~lr~~l~~~----------------------------------~-~~~---~~dd~~LlRFL 59 (296)
T 1aua_A 18 ALPGTPGNLDSAQEKALAELRKLLEDA----------------------------------G-FIE---RLDDSTLLRFL 59 (296)
T ss_dssp SCTTSTTTCCTTHHHHHHHHHHHHHHT----------------------------------T-CCS---SCSHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHhc----------------------------------C-CCC---CCchHHHHHHH
Confidence 568999999999999999999999873 1 222 57899999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHcCCCccccCCCc---ccccc--ceeeeccCCCCCeEEEEecCCCCCCCCccccccch
Q 045317 136 KAKDYKVHDAFEMLRKTLKWRRDYLADLIQEDGLD---PDVGK--LVYSNCKDREGRPLYYNVCGAFKNRELPKKLVDLE 210 (460)
Q Consensus 136 rarkfdv~kA~~~l~~~l~wR~~~~~d~i~~~~~~---~el~~--~~~~~G~Dk~GrpV~i~~~g~~d~~~l~~~~~~~~ 210 (460)
|||+||+++|.+||+++++||++++++++...... +.+.+ ..+++|+|++||||+|+++|++|+.++++..
T Consensus 60 rarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~---- 135 (296)
T 1aua_A 60 RARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVT---- 135 (296)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTC----
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccC----
Confidence 99999999999999999999999999887644322 22322 2468899999999999999999987765432
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc----c-CCCCcceeEEEEeCCCCCCCCchhHHHHHHHHHHHHhhhcccccceEEEEeC
Q 045317 211 DLCDQFIRLEVKFMEKGIKELN----F-KPGGANSIVQIIDLKNSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINV 285 (460)
Q Consensus 211 ~~~~~~~r~~~~~~E~~~~~~~----~-~~~~v~~~v~I~Dl~g~s~~~~~~~~~~~k~~~~~lq~~YPerL~~i~IIN~ 285 (460)
+.+++++++++.+|.+++.+. . ....++++++|+||+|+++.++..+.++++.++.++|+|||+||+++||||+
T Consensus 136 -~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~ 214 (296)
T 1aua_A 136 -SEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINA 214 (296)
T ss_dssp -CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECc
Confidence 468899999999998875321 1 1234789999999999976555544578899999999999999999999999
Q ss_pred ChhHHHHHHHHhhcCChhhcccEEEeCCccchHhHhccCCCCCCcccCCCccCCCC
Q 045317 286 PFWYYAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYREND 341 (460)
Q Consensus 286 P~~f~~~w~lvkpfL~~~t~~KI~~~~~~~~~~~L~e~Id~d~LP~~yGG~~~~~d 341 (460)
|++|.++|++|||||+++|++||+|+++ ++.++|.++||+++||++|||++++.+
T Consensus 215 P~~f~~~~~iikpfl~~~t~~KI~~~~~-~~~~~L~~~i~~~~LP~~yGG~~~~~~ 269 (296)
T 1aua_A 215 PFGFSTAFRLFKPFLDPVTVSKIFILGS-SYQKELLKQIPAENLPVKFGGKSEVDE 269 (296)
T ss_dssp CHHHHHHHHHHGGGSCHHHHTTEEECCS-CCHHHHTTTSCSSSSBGGGTSCBCCCG
T ss_pred hHHHHHHHHHHHhhcCHhhcceEEEeCc-ccHHHHHhhCCHhhCcHHhCCCCCCCC
Confidence 9999999999999999999999999985 678999999999999999999999875
No 4
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=100.00 E-value=2.4e-44 Score=348.43 Aligned_cols=229 Identities=23% Similarity=0.327 Sum_probs=182.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccCCCCCCCCCCCCHHHHHHHHHhcCCC
Q 045317 62 IDMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGVPLLPSKAHEGTDIVLLKFLKAKDYK 141 (460)
Q Consensus 62 ~~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~lp~~~~~~~D~~LLRFLrarkfd 141 (460)
++||+.|+++|++||+++.+.. .+++|. ..+|.+|+||||||+||
T Consensus 2 ~~ls~~~~~~l~~lr~~l~~~~--------------------------------~~~~~~---~~dd~~LlRFLra~k~d 46 (262)
T 1r5l_A 2 SHMSPLLQPGLAALRRRAREAG--------------------------------VPLAPL---PLTDSFLLRFLRARDFD 46 (262)
T ss_dssp -------CTTHHHHHHHHHHHT--------------------------------CCCSSS---CCCHHHHHHHHHHTTTC
T ss_pred CCccHHHHHHHHHHHHHHHhCC--------------------------------cccCCC---CCCHHHHHHHHHhCCCC
Confidence 4799999999999999999851 112333 67999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcC-C-CccccCCCcccc-cc-ceeeeccCCCCCeEEEEecCCCCCCCCccccccchhhHHHHH
Q 045317 142 VHDAFEMLRKTLKWRRDYL-A-DLIQEDGLDPDV-GK-LVYSNCKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFI 217 (460)
Q Consensus 142 v~kA~~~l~~~l~wR~~~~-~-d~i~~~~~~~el-~~-~~~~~G~Dk~GrpV~i~~~g~~d~~~l~~~~~~~~~~~~~~~ 217 (460)
+++|.+||+++++||++++ + .++..+.+...+ .+ ..+++|+|++||||+++++|++|+.++ +..+++
T Consensus 47 v~~A~~~l~~~l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~---------~~~~~~ 117 (262)
T 1r5l_A 47 LDLAWRLLKNYYKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVF---------TAYDVF 117 (262)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTS---------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcccC---------CHHHHH
Confidence 9999999999999999985 1 112111121222 22 356789999999999999999998653 247889
Q ss_pred HHHHHHHHHHHHHhccCCCCcceeEEEEeCCCCCCCCchhH-HHHHHHHHHHHhhhcccccceEEEEeCChhHHHHHHHH
Q 045317 218 RLEVKFMEKGIKELNFKPGGANSIVQIIDLKNSKPPDIKKF-RVVSKKTVMMLQDNYPELMHRNIIINVPFWYYAFHTVA 296 (460)
Q Consensus 218 r~~~~~~E~~~~~~~~~~~~v~~~v~I~Dl~g~s~~~~~~~-~~~~k~~~~~lq~~YPerL~~i~IIN~P~~f~~~w~lv 296 (460)
++.++++|.++..++. ++.|+++|+|++|+++.++..+ .+.++.++.++|++||+||+++||||+|++|.++|+++
T Consensus 118 r~~~~~~E~~~~~~~~---~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~v 194 (262)
T 1r5l_A 118 RVSLITSELIVQEVET---QRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI 194 (262)
T ss_dssp HHHHHHHHHHTTSHHH---HHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHhChhh---cccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHH
Confidence 9999999987754332 3689999999999976544332 36789999999999999999999999999999999999
Q ss_pred hhcCChhhcccEEEeCCccchHhHhccCCCCCCcccCCCccCC
Q 045317 297 SKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYRE 339 (460)
Q Consensus 297 kpfL~~~t~~KI~~~~~~~~~~~L~e~Id~d~LP~~yGG~~~~ 339 (460)
||||+++|++||+|+++ ++.++|.++|| ++||++|||++++
T Consensus 195 kpfl~~~t~~Ki~~~~~-~~~~~L~~~i~-~~LP~~yGG~~~~ 235 (262)
T 1r5l_A 195 KPFLTEKIKERIHMHGN-NYKQSLLQHFP-DILPLEYGGEEFS 235 (262)
T ss_dssp GGGSCHHHHTTEEECCS-SCHHHHHHHST-TTSCGGGTCSSCC
T ss_pred HHhcCHHHHhheEEeCC-CcHHHHHHHhh-hhCcHhhCCCCCC
Confidence 99999999999999984 67899999999 9999999999864
No 5
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*
Probab=100.00 E-value=1.5e-43 Score=351.98 Aligned_cols=236 Identities=19% Similarity=0.313 Sum_probs=186.0
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccCCCCCC--------CCCCCCHH
Q 045317 58 AAAIIDMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGVPLLPS--------KAHEGTDI 129 (460)
Q Consensus 58 ~~~~~~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~lp~--------~~~~~~D~ 129 (460)
...+++.++...++|++||+++.+. |++|. .....||.
T Consensus 48 ~~eL~E~~~~~~~~l~~LR~wi~~~----------------------------------p~l~~~l~~~~~~~~~~~dD~ 93 (316)
T 3hx3_A 48 KDELNEREETREEAVRELQEMVQAQ----------------------------------AASGEELAVAVAERVQEKDSG 93 (316)
T ss_dssp --------CHHHHHHHHHHHHHHHH----------------------------------HTTTCHHHHHHHHHTTTCCHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHhC----------------------------------CCccccccccccccCCCCCHH
Confidence 3446677777888999999999874 22210 00157999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCC--CccccCCCcccc-cc-ceeeeccCCCCCeEEEEecCCCCCCCCccc
Q 045317 130 VLLKFLKAKDYKVHDAFEMLRKTLKWRRDYLA--DLIQEDGLDPDV-GK-LVYSNCKDREGRPLYYNVCGAFKNRELPKK 205 (460)
Q Consensus 130 ~LLRFLrarkfdv~kA~~~l~~~l~wR~~~~~--d~i~~~~~~~el-~~-~~~~~G~Dk~GrpV~i~~~g~~d~~~l~~~ 205 (460)
+|+||||||+||+++|.+||.++++||++++. +++..+.+...+ .+ .++++|+|++||||+++++|++|+.+.
T Consensus 94 ~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~--- 170 (316)
T 3hx3_A 94 FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEI--- 170 (316)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTS---
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCC---
Confidence 99999999999999999999999999999862 222111111122 23 356789999999999999999998653
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHhccCCCCcceeEEEEeCCCCCCCCchhH-HHHHHHHHHHHhhhcccccceEEEEe
Q 045317 206 LVDLEDLCDQFIRLEVKFMEKGIKELNFKPGGANSIVQIIDLKNSKPPDIKKF-RVVSKKTVMMLQDNYPELMHRNIIIN 284 (460)
Q Consensus 206 ~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~v~~~v~I~Dl~g~s~~~~~~~-~~~~k~~~~~lq~~YPerL~~i~IIN 284 (460)
+.++++++.++++|.++... ..+++|+++|+|++|+++.++..+ .+.++.++.++|++||+||+++||||
T Consensus 171 ------~~~~~~r~~~~~lE~~l~~~---~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN 241 (316)
T 3hx3_A 171 ------TFDEILQAYCFILEKLLENE---ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIH 241 (316)
T ss_dssp ------CHHHHHHHHHHHHHHHTTSH---HHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEES
T ss_pred ------CHHHHHHHHHHHHHHHHhcc---cCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEe
Confidence 35889999999999987543 235789999999999976544332 25789999999999999999999999
Q ss_pred CChhHHHHHHHHhhcCChhhcccEEEeCCccchHhHhccCCCCCCcccCCCccCCCC
Q 045317 285 VPFWYYAFHTVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYREND 341 (460)
Q Consensus 285 ~P~~f~~~w~lvkpfL~~~t~~KI~~~~~~~~~~~L~e~Id~d~LP~~yGG~~~~~d 341 (460)
+|++|.++|+++||||+++|++||+|+++ + .++|.++||+++||++|||++++.|
T Consensus 242 ~P~~f~~i~~ivkpfl~~kt~~KI~~~~~-~-~~~L~~~I~~~~LP~eyGG~~~~~d 296 (316)
T 3hx3_A 242 QPWYFTTTYNVVKPFLKSKLLERVFVHGD-D-LSGFYQEIDENILPSDFGGTLPKYD 296 (316)
T ss_dssp CCTTHHHHHHHHGGGCCHHHHTTEEEEET-C-CHHHHHHSCGGGSBGGGTSSBCCCC
T ss_pred CCHHHHHHHHHHHHhCCHHhhhheEEeCC-C-HHHHHhhCCHhhCcHhhCCCCCCcC
Confidence 99999999999999999999999999974 3 5799999999999999999998765
No 6
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=99.06 E-value=2.4e-10 Score=109.16 Aligned_cols=133 Identities=17% Similarity=0.254 Sum_probs=104.1
Q ss_pred cceeeeccCCCCCeEEEEecCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCcceeEEEEeCCCCCCCC
Q 045317 175 KLVYSNCKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELNFKPGGANSIVQIIDLKNSKPPD 254 (460)
Q Consensus 175 ~~~~~~G~Dk~GrpV~i~~~g~~d~~~l~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~v~~~v~I~Dl~g~s~~~ 254 (460)
+.+|-.|.|++||||+++.+.+++...+ ..+.++.+.+..++.+. .....+|+|++|++..+
T Consensus 11 ~ify~~G~d~dGrpViv~~~~~l~~~~~---------D~e~Ll~~vl~tl~~~~---------~~~y~lV~d~T~~~~~n 72 (256)
T 3pg7_A 11 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSN 72 (256)
T ss_dssp TSEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGG
T ss_pred CCEEEcCcCCCCCEEEEEEeecCCCCCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEECCCCCccc
Confidence 4567779999999999999999876432 24556655555544332 25689999999997654
Q ss_pred chhHHHHHHHHHHHHhhhcccccceEEEEeCChhHHHHHHH-HhhcCChhhcccEEEeCCccchHhHhccCCCCCC
Q 045317 255 IKKFRVVSKKTVMMLQDNYPELMHRNIIINVPFWYYAFHTV-ASKFLSPRCKRKFVFARPAKVTKTLLKFISPENL 329 (460)
Q Consensus 255 ~~~~~~~~k~~~~~lq~~YPerL~~i~IIN~P~~f~~~w~l-vkpfL~~~t~~KI~~~~~~~~~~~L~e~Id~d~L 329 (460)
.+.+ +.++.+.+++...|...|+++||+|++++|...|+. .++|.+.+..+|+.++++ ..+|.++|+.++|
T Consensus 73 ~p~~-~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~s---l~eL~~~i~~~~L 144 (256)
T 3pg7_A 73 RFKT-DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQ 144 (256)
T ss_dssp CCCH-HHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESS---TTGGGGTSCGGGC
T ss_pred CCcH-HHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECC---HHHHHhhcCHHHc
Confidence 4443 578999999999999999999999999999976655 566777788899999985 7899999987665
No 7
>3peg_A Neurofibromin; SEC14 domain, pleckstrin homology domain, PH domain, phosphatidylethanolamin binding, lipid binding, lipid bindi protein; HET: PEV; 2.52A {Homo sapiens}
Probab=98.81 E-value=3.4e-09 Score=102.77 Aligned_cols=133 Identities=17% Similarity=0.247 Sum_probs=93.5
Q ss_pred cceeeeccCCCCCeEEEEecCCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCcceeEEEEeCCCCCCCC
Q 045317 175 KLVYSNCKDREGRPLYYNVCGAFKNRELPKKLVDLEDLCDQFIRLEVKFMEKGIKELNFKPGGANSIVQIIDLKNSKPPD 254 (460)
Q Consensus 175 ~~~~~~G~Dk~GrpV~i~~~g~~d~~~l~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~v~~~v~I~Dl~g~s~~~ 254 (460)
+.+|-.|.|++||||+++.+++++...+ ..+.++-+.+..++... -....+|+|+++++..+
T Consensus 30 ~~f~~~g~d~dG~PViv~~~~~~~~~~~---------D~e~Lly~il~tl~~~~---------~~~y~lV~D~T~~~~~n 91 (290)
T 3peg_A 30 SIFYQAGTSKAGNPIFYYVARRFKTGQI---------NGDLLIYHVLLTLKPYY---------AKPYEIVVDLTHTGPSN 91 (290)
T ss_dssp TTEEEEEECTTSCEEEEEEGGGCCBTTB---------CHHHHHHHHHHHHTTTT---------TSCEEEEEECTTCCGGG
T ss_pred CeEEEeccCCCCCEEEEEEeecCCccCC---------CHHHHHHHHHHHHHHhc---------CCCeEEEEEcCCCCccC
Confidence 4556668999999999999999876432 23455544444433222 24689999999997644
Q ss_pred chhHHHHHHHHHHHHhhhcccccceEEEEeCChhHHHHH-HHHhhcCChhhcccEEEeCCccchHhHhccCCCCCC
Q 045317 255 IKKFRVVSKKTVMMLQDNYPELMHRNIIINVPFWYYAFH-TVASKFLSPRCKRKFVFARPAKVTKTLLKFISPENL 329 (460)
Q Consensus 255 ~~~~~~~~k~~~~~lq~~YPerL~~i~IIN~P~~f~~~w-~lvkpfL~~~t~~KI~~~~~~~~~~~L~e~Id~d~L 329 (460)
.+.. +.++.+.+++...|+..++++||+|+|.+|...+ .+.+++.+.+..+|+.+++. ...|..+++++++
T Consensus 92 ~p~~-~~l~~~~~llp~~~~kNl~~~Yi~np~~~f~~~~k~~~~~~~~~k~~~k~v~~~~---~~~L~~~i~~~~~ 163 (290)
T 3peg_A 92 RFKT-DFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDC---PGKLAEHIEHEQQ 163 (290)
T ss_dssp CCCH-HHHGGGGTSSCHHHHHTEEEEEEESCCHHHHHHHHHTTTTGGGGTTCTTEEEESS---SCC----------
T ss_pred CChH-HHHHHHHHHCCHHHHhhccEEEEECCCHHHHHHHHHHHhhhhhhhcCceEEEcCC---HHHHHhhCCHHHh
Confidence 3433 5889999999999999999999999999998754 57788888899999999875 4558888887643
No 8
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.04 E-value=2.8 Score=30.68 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccCCCCCCCCCCCCHHHHHHHHHhcCCC
Q 045317 62 IDMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGVPLLPSKAHEGTDIVLLKFLKAKDYK 141 (460)
Q Consensus 62 ~~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~lp~~~~~~~D~~LLRFLrarkfd 141 (460)
..|+.++.+++.+|..... ..+......||.+.+||
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg--------------------------------------------~~d~~~A~~~Le~~~Wn 47 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTG--------------------------------------------IESMDQCRHTLEQHNWN 47 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHC--------------------------------------------CSCHHHHHHHHHHHTSC
T ss_pred hhcChhHHHHHHHHHHHhC--------------------------------------------CCCHHHHHHHHHHcCCC
Confidence 4889999998888876433 12556789999999999
Q ss_pred HHHHHHHHH
Q 045317 142 VHDAFEMLR 150 (460)
Q Consensus 142 v~kA~~~l~ 150 (460)
++.|+..+-
T Consensus 48 Le~Av~~ff 56 (67)
T 2dam_A 48 IEAAVQDRL 56 (67)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 9
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=78.79 E-value=9.4 Score=28.97 Aligned_cols=51 Identities=10% Similarity=0.162 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccCCCCCCCCCCCCHHHHHHHHHhcCCCH
Q 045317 63 DMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGVPLLPSKAHEGTDIVLLKFLKAKDYKV 142 (460)
Q Consensus 63 ~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~lp~~~~~~~D~~LLRFLrarkfdv 142 (460)
+|++.++..|..--+.+.+++ ++...|..|.+-....+||+
T Consensus 25 ~Ls~~d~arL~SCLd~iR~Vl---------------------------------------GdsV~e~~Lv~ailk~dfD~ 65 (83)
T 1ufz_A 25 QLSEIDQARLYSCLDHMREVL---------------------------------------GDAVPDDILTEAILKHKFDV 65 (83)
T ss_dssp HCCHHHHHHHHHHHHHHHHHT---------------------------------------TTTSCHHHHHHHHHHTTSCH
T ss_pred cCCHHHHHHHHHHHHHHHHHH---------------------------------------cccCCHHHHHHHHHHhcCCH
Confidence 488888888877777777763 12568899999999999999
Q ss_pred HHHHHHHHHH
Q 045317 143 HDAFEMLRKT 152 (460)
Q Consensus 143 ~kA~~~l~~~ 152 (460)
++|...+.+-
T Consensus 66 ekALd~vL~~ 75 (83)
T 1ufz_A 66 QKALSVVLEQ 75 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988654
No 10
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.79 E-value=4.1 Score=29.18 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=20.6
Q ss_pred CHHHHHHHHHhcCCCHHHHHHHH
Q 045317 127 TDIVLLKFLKAKDYKVHDAFEML 149 (460)
Q Consensus 127 ~D~~LLRFLrarkfdv~kA~~~l 149 (460)
+......||.+.+||++.|+..+
T Consensus 29 ~~~~A~~~Le~~~WnLe~Av~~f 51 (62)
T 2dal_A 29 SESVGKHMLEACNNNLEMAVTMF 51 (62)
T ss_dssp CHHHHHHHHHTTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHH
Confidence 56788999999999999999876
No 11
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=67.56 E-value=4.8 Score=28.61 Aligned_cols=27 Identities=19% Similarity=0.126 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
..+...+-.-|++++.|++.|..+|.+
T Consensus 22 ~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 22 NMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 468889999999999999999999864
No 12
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.16 E-value=14 Score=26.92 Aligned_cols=27 Identities=22% Similarity=0.010 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
+.++...+|-|++.+.|+++|++.|..
T Consensus 31 F~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 31 FVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 446667799999999999999998865
No 13
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=58.03 E-value=5.8 Score=33.01 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.7
Q ss_pred ccccEEEeCcCcEEEEEEE
Q 045317 415 SMRNSFYISEPGKIVITID 433 (460)
Q Consensus 415 ~~~g~~~~~~~G~y~l~fd 433 (460)
+..|.|+|+.||+|.+.|.
T Consensus 35 ~~TG~Ftap~~G~Y~Fs~~ 53 (134)
T 2wnv_A 35 NHSGRFVCTVPGYYYFTFQ 53 (134)
T ss_dssp TTTTEEECCSCEEEEEEEE
T ss_pred CCCCEEECeeCCEEEEEEE
Confidence 3468999999999999995
No 14
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=57.42 E-value=6 Score=32.75 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.8
Q ss_pred ccccEEEeCcCcEEEEEEE
Q 045317 415 SMRNSFYISEPGKIVITID 433 (460)
Q Consensus 415 ~~~g~~~~~~~G~y~l~fd 433 (460)
+..|.|+|+.||+|.+.|.
T Consensus 39 ~~TG~Ftap~~G~Y~Fs~~ 57 (131)
T 2wnv_C 39 TSTGKFTCKVPGLYYFVYH 57 (131)
T ss_dssp TTTTEEECSSCEEEEEEEE
T ss_pred CCCCEEEcccCCEEEEEEE
Confidence 3468999999999999996
No 15
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=57.41 E-value=19 Score=23.94 Aligned_cols=26 Identities=15% Similarity=-0.109 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLR 150 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~ 150 (460)
..++...++-|++.++|+++|.+.|.
T Consensus 19 F~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34566679999999999999998874
No 16
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=57.40 E-value=16 Score=25.69 Aligned_cols=27 Identities=15% Similarity=-0.095 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
..++...++-|++.++|+++|++.|..
T Consensus 29 F~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346667799999999999999998865
No 17
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=57.08 E-value=6.1 Score=32.97 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.7
Q ss_pred ccccEEEeCcCcEEEEEEE
Q 045317 415 SMRNSFYISEPGKIVITID 433 (460)
Q Consensus 415 ~~~g~~~~~~~G~y~l~fd 433 (460)
+..|.|+|+.||+|.+.|.
T Consensus 38 ~~TG~Ftap~~G~Y~Fs~~ 56 (136)
T 2wnv_B 38 PRSGKFTCKVPGLYYFTYH 56 (136)
T ss_dssp TTTTEEECSSCEEEEEEEE
T ss_pred CCCCEEECCcCeEEEEEEE
Confidence 3468999999999999996
No 18
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=56.10 E-value=27 Score=30.46 Aligned_cols=64 Identities=5% Similarity=-0.042 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccCCCCCCCCCCCCHHHHHHHHHhcCCC
Q 045317 62 IDMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGVPLLPSKAHEGTDIVLLKFLKAKDYK 141 (460)
Q Consensus 62 ~~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~lp~~~~~~~D~~LLRFLrarkfd 141 (460)
-+||++|+++++++|+.......+ ...+ + .....-|-.-+.+-+||
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~-----------------Lr~q----l-------------~akr~EL~aL~~a~~~D 111 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSA-----------------LRQQ----L-------------ISKRYEYNALLTASSPD 111 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHH-----------------HHHH----H-------------HHHHHHHHHHHTSSSCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH-----------------HHHH----H-------------HHHHHHHHHHHhCCCCC
Confidence 479999999999998877764211 0010 0 01123455566678899
Q ss_pred HHHHHHHHHHHHHHHHHc
Q 045317 142 VHDAFEMLRKTLKWRRDY 159 (460)
Q Consensus 142 v~kA~~~l~~~l~wR~~~ 159 (460)
.+++.++..+--+-|.+.
T Consensus 112 eakI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 112 TAKINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777777654
No 19
>3jqw_A COLH protein, collagenase; beta-barrel, dual calcium site, cell adhesion; 2.00A {Clostridium histolyticum} SCOP: b.23.2.0 PDB: 3jqx_A
Probab=55.81 E-value=81 Score=25.56 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=44.6
Q ss_pred cceeeeeecCCCceEEEEEEeecceeEEEEEEEeCCCCCeEEEEeccccccCCCCcccccEEEeCcCcEEEEEEECCCcc
Q 045317 359 AGSVRIPVAETGVTMMWDLTVLGWDVSYKEEFIPDDEGSYRVLLQSEKEKKGGEGESMRNSFYISEPGKIVITIDNVTLK 438 (460)
Q Consensus 359 ~~~v~~~v~~~g~~l~W~f~t~~~DI~Fgi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~G~y~l~fdNs~~~ 438 (460)
.-...|.|..+| .|.=.|.... .++|......++ .....++. . +...+.|++.+.+||+|-|..-+ | .
T Consensus 38 ~D~y~F~V~~~g-~v~I~l~~~~-~~~~~w~ly~~~--~nyv~y~~-~-----~gn~~~~~~~~~~pGkYYl~Vy~-y-~ 105 (121)
T 3jqw_A 38 QDYFYFDVITPG-EVKIDINKLG-YGGATWVVYDEN--NNAVSYAT-D-----DGQNLSGKFKADKPGRYYIHLYM-F-N 105 (121)
T ss_dssp CEEEEEEESSCE-EEEEEEEECS-SSEEEEEEECTT--SCEEEECE-E-----CSSEEEEEEEECSCEEEEEEEEE-E-E
T ss_pred eeEEEEEeCCCC-eEEEEEEecC-CCcEEEEEEeCC--CCeEEEec-c-----CCCEEEEEEEeCCCeeEEEEEEE-e-c
Confidence 344455666665 3555555432 333333222222 22233333 1 11245789999899999998865 2 3
Q ss_pred ceEEEEEEEEec
Q 045317 439 NKRVYYRFKTKP 450 (460)
Q Consensus 439 ~K~v~Y~i~v~~ 450 (460)
+.+..|.+.|+-
T Consensus 106 ~~~g~Y~l~i~g 117 (121)
T 3jqw_A 106 GSYMPYRINIEG 117 (121)
T ss_dssp CSCEEEEEEEEE
T ss_pred CCCccEEEEEEe
Confidence 346789998873
No 20
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.07 E-value=12 Score=27.31 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRKT 152 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~~ 152 (460)
..+...+..-|++++.|++.|.+.|...
T Consensus 31 ~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 31 NMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4678889999999999999999998653
No 21
>2ka3_A Emilin-1; C1Q-like domain, homotrimeric protein complex, beta-sandwich, structural protein, cell adhesion, extracellular matrix; NMR {Homo sapiens} PDB: 2oii_A
Probab=53.41 E-value=7.4 Score=33.61 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=16.6
Q ss_pred ccccEEEeCcCcEEEEEEE
Q 045317 415 SMRNSFYISEPGKIVITID 433 (460)
Q Consensus 415 ~~~g~~~~~~~G~y~l~fd 433 (460)
+..|.|+|+.||+|.+.|.
T Consensus 48 ~~TG~FTaPv~GvY~Fsf~ 66 (162)
T 2ka3_A 48 PETGVFTAPLAGRYLLSAV 66 (162)
T ss_dssp TTTTEEECCCCEEEEEEEC
T ss_pred CCCCEEECCCCeEEEEEEE
Confidence 3468999999999999993
No 22
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=47.61 E-value=58 Score=23.89 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
...+.|+.+.|..++.|++.+...|..
T Consensus 26 dLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 26 DLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 589999999999999999999998864
No 23
>2cio_B Inhibitor of cysteine peptidase; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Trypanosoma brucei}
Probab=47.48 E-value=1e+02 Score=24.88 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=46.4
Q ss_pred chhhhhccCCcceeeeeecCCCceEEEEEEeecc------eeEEEEEEEeCCCCC-eEEEEeccccccCCCCcccccEEE
Q 045317 349 TSELIVRKNTAGSVRIPVAETGVTMMWDLTVLGW------DVSYKEEFIPDDEGS-YRVLLQSEKEKKGGEGESMRNSFY 421 (460)
Q Consensus 349 ~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~t~~~------DI~Fgi~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~g~~~ 421 (460)
-..+.++.|+...|.++-. +.+=..|.+..... =+..+-.|.+...+. ... ++. .++---|...=.|+
T Consensus 12 ~~ti~l~~Ge~~~I~L~~N-PtTGY~W~~~~~~~~~l~~~~~~v~~~y~~~~~~~~~~~--~~~--~~vG~gG~~~~~fk 86 (121)
T 2cio_B 12 NKTIRMVIGETFTIELESN-PTTGYTWLRSGLAGTELSDCTFAIQSKFNNRAPHDNHKN--HRR--LLVGAGGTMVLEVK 86 (121)
T ss_pred CcEEEEcCCCEEEEEeCCC-CCCCeEEEEecCccccCCCccEEEeeeEEcCCCCccccc--ccc--cEeCCCceEEEEEE
Confidence 3468899999888888854 44559999987321 133333444322210 000 000 01000011122688
Q ss_pred eCcCcEEEEEEECCC
Q 045317 422 ISEPGKIVITIDNVT 436 (460)
Q Consensus 422 ~~~~G~y~l~fdNs~ 436 (460)
+.+||++.|.|....
T Consensus 87 a~~~G~~~i~~~Y~R 101 (121)
T 2cio_B 87 ALKAGKHTLSLAYGR 101 (121)
T ss_pred EecCceEEEEEEEEC
Confidence 999999999998876
No 24
>1gr3_A Collagen X; extracellular matrix, connective tissue; HET: CPS; 2.0A {Homo sapiens} SCOP: b.22.1.1
Probab=46.53 E-value=11 Score=32.39 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.8
Q ss_pred ccccEEEeCcCcEEEEEEE
Q 045317 415 SMRNSFYISEPGKIVITID 433 (460)
Q Consensus 415 ~~~g~~~~~~~G~y~l~fd 433 (460)
+..|.|+|+.||+|.+.|.
T Consensus 64 ~~TG~FtaPv~GvY~Fsft 82 (160)
T 1gr3_A 64 PRTGIFTCQIPGIYYFSYH 82 (160)
T ss_dssp TTTTEEECSSCEEEEEEEE
T ss_pred CCCCEEEcccCCEEEEEEE
Confidence 3468999999999999996
No 25
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=45.50 E-value=37 Score=23.22 Aligned_cols=27 Identities=22% Similarity=0.007 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
+.+....++-|++.++|+++|.+.|..
T Consensus 23 F~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 23 FINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 337778899999999999999998864
No 26
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=44.33 E-value=50 Score=23.19 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045317 126 GTDIVLLKFLKAKDYKVHDAFEMLRKT 152 (460)
Q Consensus 126 ~~D~~LLRFLrarkfdv~kA~~~l~~~ 152 (460)
..-.+..++|...+||.++|...+...
T Consensus 20 mn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 20 MNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 456799999999999999999988654
No 27
>2xr4_A Lectin; sugar binding protein, LUNG, pathogen; 1.90A {Burkholderia cenocepacia}
Probab=43.53 E-value=86 Score=25.08 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=59.6
Q ss_pred CChhhcccEEEeCCccchHhHhccCCCCCCccc-CCCccCCCCCCCCCccchhhhhccCCcceeeeeecCCC--ceEEEE
Q 045317 300 LSPRCKRKFVFARPAKVTKTLLKFISPENLPVE-YGGLYRENDDFFPEDRTSELIVRKNTAGSVRIPVAETG--VTMMWD 376 (460)
Q Consensus 300 L~~~t~~KI~~~~~~~~~~~L~e~Id~d~LP~~-yGG~~~~~d~~~~~d~~~~~~V~~g~~~~v~~~v~~~g--~~l~W~ 376 (460)
||+.++=.+..+.+......+.=|||-+..|+. |=|...... ..-+-+..+|+ -.|.|+|...| |.|...
T Consensus 9 LP~ni~Fg~ta~~Nsa~~QtikvyIdd~~~~~aT~~g~gt~d~------~~~t~~lnSg~-GkVriev~~nGkps~l~s~ 81 (116)
T 2xr4_A 9 LPPHIKFGVTALTHAANDQTIDIYIDDDPKPAATFKGAGAQDQ------NLGTKVLDSGN-GRVRVIVMANGRPSRLGSR 81 (116)
T ss_dssp CCTTCEEEEEEEECSCSCCEEEEEETTCSSCSEEECCCSSTTE------EEEEEEEECTT-SEEEEEEEETTEECEEEEE
T ss_pred CCCCcEEeEEEEeccCCceeEEEEeCCCCccceeeeccCcCCC------ccceEEEecCC-CeEEEEEEeCCccccceee
Confidence 678888888887765556777778998777776 777765321 11122334444 67777776544 678888
Q ss_pred EEeecceeEEEEEEEeCC
Q 045317 377 LTVLGWDVSYKEEFIPDD 394 (460)
Q Consensus 377 f~t~~~DI~Fgi~~~~~~ 394 (460)
..+-.+..+|+|.=...+
T Consensus 82 ~~~l~~k~~~~iigaedG 99 (116)
T 2xr4_A 82 QVDIFKKSYFGIIGSEDG 99 (116)
T ss_dssp EEEETTTEEEEEEEEECS
T ss_pred eeeccCCccEEEEEcccC
Confidence 878788999999765433
No 28
>1o91_A Collagen alpha 1(VIII) chain; C1Q_LIKE_domain, extracellular matrix, adhesion, connective tissue, repeat; HET: CPS; 1.9A {Mus musculus} SCOP: b.22.1.1
Probab=41.10 E-value=15 Score=32.20 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=16.4
Q ss_pred cccEEEeCcCcEEEEEEE
Q 045317 416 MRNSFYISEPGKIVITID 433 (460)
Q Consensus 416 ~~g~~~~~~~G~y~l~fd 433 (460)
..|.|+|+.||+|.+.|.
T Consensus 83 ~TG~FTaPv~GvY~Fsft 100 (178)
T 1o91_A 83 QTGIFTCEVPGVYYFAYH 100 (178)
T ss_dssp TTTEEECCSCEEEEEEEE
T ss_pred CCCEEEcccCeEEEEEEE
Confidence 468999999999999996
No 29
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=38.49 E-value=29 Score=25.75 Aligned_cols=27 Identities=33% Similarity=0.250 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
+.++...++-|++.++|+++|++.|..
T Consensus 41 F~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 41 FANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp CCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346677799999999999999998854
No 30
>1nqj_A Class 1 collagenase; beta sandwich, metalloprotease, collagen-binding domain, lithium, chlorine, hydrolase; 1.00A {Clostridium histolyticum} SCOP: b.23.2.1 PDB: 2o8o_A 1nqd_A
Probab=37.50 E-value=1.5e+02 Score=23.97 Aligned_cols=31 Identities=16% Similarity=0.334 Sum_probs=24.8
Q ss_pred ccccEEEeCcCcEEEEEEECCCccceEEEEEEEEe
Q 045317 415 SMRNSFYISEPGKIVITIDNVTLKNKRVYYRFKTK 449 (460)
Q Consensus 415 ~~~g~~~~~~~G~y~l~fdNs~~~~K~v~Y~i~v~ 449 (460)
.+.|++.+. ||+|-|.... | +....|.+.|+
T Consensus 88 ~~~~~~~~~-pGkYYl~Vy~-y--~~~g~Y~l~v~ 118 (119)
T 1nqj_A 88 KVSNKVKLR-PGKYYLLVYK-Y--SGSGNYELRVN 118 (119)
T ss_dssp EEEEEEEEC-SEEEEEEEEE-E--ESCEEEEEEEE
T ss_pred cEEEEEEcC-CcEEEEEEEE-e--CCCceEEEEEe
Confidence 346889887 9999998876 2 67888998876
No 31
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.99 E-value=44 Score=22.99 Aligned_cols=28 Identities=29% Similarity=0.126 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRKT 152 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~~ 152 (460)
+.++...++-|++.++|+++|++.|..+
T Consensus 21 F~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 21 FLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3455567999999999999999998754
No 32
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=36.82 E-value=41 Score=21.04 Aligned_cols=24 Identities=17% Similarity=0.033 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHH
Q 045317 126 GTDIVLLKFLKAKDYKVHDAFEML 149 (460)
Q Consensus 126 ~~D~~LLRFLrarkfdv~kA~~~l 149 (460)
.+.....+.|++.++|++.|.+.|
T Consensus 16 f~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 16 FDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 355667899999999999998765
No 33
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=35.24 E-value=71 Score=22.28 Aligned_cols=26 Identities=4% Similarity=0.020 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 126 GTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 126 ~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
..-.+-.++|...+||.++|...+..
T Consensus 19 Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 19 LNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp SCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45679999999999999999999876
No 34
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=33.50 E-value=32 Score=22.42 Aligned_cols=24 Identities=13% Similarity=0.174 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHH
Q 045317 126 GTDIVLLKFLKAKDYKVHDAFEML 149 (460)
Q Consensus 126 ~~D~~LLRFLrarkfdv~kA~~~l 149 (460)
.+......||.+.+||++.|+..+
T Consensus 18 ~~~~~A~~~L~~~~wdle~Ai~~f 41 (46)
T 1v92_A 18 AEEDRARFFLESAGWDLQIALASF 41 (46)
T ss_dssp CCHHHHHHHHHHTTSCSHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCHHHHHHHH
Confidence 367789999999999999999876
No 35
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=33.10 E-value=49 Score=26.83 Aligned_cols=80 Identities=15% Similarity=0.077 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcceeEEEEeCCCCCCCCchhHHHHHHHHHHHHhhhcccccceEEEEeCChhHHHH
Q 045317 213 CDQFIRLEVKFMEKGIKELNFKPGGANSIVQIIDLKNSKPPDIKKFRVVSKKTVMMLQDNYPELMHRNIIINVPFWYYAF 292 (460)
Q Consensus 213 ~~~~~r~~~~~~E~~~~~~~~~~~~v~~~v~I~Dl~g~s~~~~~~~~~~~k~~~~~lq~~YPerL~~i~IIN~P~~f~~~ 292 (460)
.+++-. +.-.+|..+.. .++ ..+.+++|+..+.+.....++.-++ .-..| -....|+-||-.+.|...+
T Consensus 32 ~~d~~~-l~~~l~~~l~~----~~~-~~i~ll~~~~~f~G~~~~a~~~d~k----~~~~h-~~~~~RiAvV~d~~W~~~~ 100 (126)
T 2q3l_A 32 HEDYEQ-MTPLLESALAG----IKT-PEIVALIDITELDGLSLHAAWDDLK----LGLKH-GKEFKRVAIIGQGELQEWA 100 (126)
T ss_dssp HHHHHH-HHHHHHHHTTT----CCS-SCEEEEEEEEEEEEECHHHHHHHHH----HHHHH-GGGEEEEEEECCSHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHh----CCC-ceEEEEEEecCCCCCCHHHHHHHHH----hhhhH-HhcCCEEEEEcChHHHHHH
Confidence 355554 44555655431 122 1155666655443333333332222 21234 3778999999999999999
Q ss_pred HHHHhhcCChh
Q 045317 293 HTVASKFLSPR 303 (460)
Q Consensus 293 w~lvkpfL~~~ 303 (460)
-++.++|++..
T Consensus 101 ~~~~~~~~~~e 111 (126)
T 2q3l_A 101 TRVANWFTPGE 111 (126)
T ss_dssp HHHHHHHCSSE
T ss_pred HHHHhhccCCc
Confidence 99999997763
No 36
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=32.79 E-value=39 Score=23.13 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH
Q 045317 129 IVLLKFLKAKDYKVHDAFEMLR 150 (460)
Q Consensus 129 ~~LLRFLrarkfdv~kA~~~l~ 150 (460)
.+|-|.|.+.++|+.+|...|.
T Consensus 27 GWLt~LL~~k~gDI~~aLD~lq 48 (52)
T 1q02_A 27 GWLTRLLQTKNYDIGAALDTIQ 48 (52)
T ss_dssp SHHHHHHHHTTTCHHHHHHHHT
T ss_pred cHHHHHHHHccCCHHHHHHHhh
Confidence 5899999999999999998875
No 37
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=32.70 E-value=56 Score=22.59 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
+.|...-.|-|+..++|+++|+..|.+
T Consensus 21 F~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 21 FCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp CCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 557778899999999999999888764
No 38
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=31.76 E-value=53 Score=22.21 Aligned_cols=28 Identities=14% Similarity=0.065 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRKT 152 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~~ 152 (460)
..+-..+-+-|++.++|+++|..+|.+-
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4667788899999999999999998753
No 39
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=31.23 E-value=27 Score=29.25 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=15.8
Q ss_pred cccEEEeCcCcEEEEEEE
Q 045317 416 MRNSFYISEPGKIVITID 433 (460)
Q Consensus 416 ~~g~~~~~~~G~y~l~fd 433 (460)
-.|.|+|+.+|+|.+.|.
T Consensus 38 sTG~FTaPv~G~Y~Fs~~ 55 (148)
T 4f3j_A 38 VTGKFTCQVPGVYYFAVH 55 (148)
T ss_dssp TTTEEECCSCEEEEEEEE
T ss_pred CCCeEECCcceEEEEEEE
Confidence 358999999999999885
No 40
>3m86_A Amoebiasin-2; cysteine protease inhibitor, protease, protein binding; HET: 1PE; 1.65A {Entamoeba histolytica} PDB: 3m88_A
Probab=27.59 E-value=2.2e+02 Score=22.34 Aligned_cols=91 Identities=9% Similarity=0.080 Sum_probs=53.2
Q ss_pred ccchhhhhccCCcceeeeeecCCCceEEEEEEeecceeEEE-EEEEeCCCCCeEEEEeccccccCCCCcccccEEEeCcC
Q 045317 347 DRTSELIVRKNTAGSVRIPVAETGVTMMWDLTVLGWDVSYK-EEFIPDDEGSYRVLLQSEKEKKGGEGESMRNSFYISEP 425 (460)
Q Consensus 347 d~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~t~~~DI~Fg-i~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~ 425 (460)
|.-+.+.++.|+...|.++-. +.+=..|.+...+.-+... -.|... |... .++---|...=.|.+.++
T Consensus 13 d~g~~I~v~~Ge~~~I~L~~N-ptTGY~W~~~~~~~~~~l~~~~~~~~---------p~~~-~~vG~gG~~~~~f~a~~~ 81 (111)
T 3m86_A 13 EDHATLHISFNDLIKIQLRTN-PSTGYAWNIEYPTDTFSLSQDTIKAE---------PHPS-GMVGFPSIREIQLKPLKV 81 (111)
T ss_dssp GTTCEEEECTTCEEEEEEEEC-GGGTCEEEEECCTTTEEEEEEEEEEC---------CCST-TTSSCSEEEEEEEEESSC
T ss_pred HCCcEEEEcCCCEEEEEECCC-CCCCeEEEEecCCCcEEEcccceEeC---------CCCC-CCCCCCeeEEEEEEEeCC
Confidence 334578899999999999854 3345899998753222211 111110 1100 011000111115889999
Q ss_pred cEEEEEEECCC-c-----cceEEEEEEEE
Q 045317 426 GKIVITIDNVT-L-----KNKRVYYRFKT 448 (460)
Q Consensus 426 G~y~l~fdNs~-~-----~~K~v~Y~i~v 448 (460)
|++.|.|.... + -.++..|.|.|
T Consensus 82 G~~~i~~~Y~RpWe~~~~~~~tf~~~V~V 110 (111)
T 3m86_A 82 GTTTIKLGYSRPWEKGKEPLRSLTYSVVI 110 (111)
T ss_dssp EEEEEEEEEECTTCCSCCCSEEEEEEEEE
T ss_pred eEEEEEEEEECccCCCCCcccEEEEEEEE
Confidence 99999999887 2 35777787765
No 41
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=26.75 E-value=76 Score=25.26 Aligned_cols=27 Identities=22% Similarity=0.261 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
..++...++-|++.++|+++|++.|.+
T Consensus 78 F~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 78 IQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp CCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346678899999999999999999864
No 42
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=25.49 E-value=37 Score=34.20 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=17.7
Q ss_pred ccccEEEeCcCcEEEEEEEC
Q 045317 415 SMRNSFYISEPGKIVITIDN 434 (460)
Q Consensus 415 ~~~g~~~~~~~G~y~l~fdN 434 (460)
+..|.|+|+.||+|.+.|.=
T Consensus 200 ~~TG~Ftcpv~GvY~Fs~~~ 219 (442)
T 4dou_A 200 GSTGKFHCNIPGLYYFAYHI 219 (442)
T ss_dssp TTTTEEECCSCEEEEEEEEE
T ss_pred CCCCeEeCccceEEEEEEEE
Confidence 45799999999999999983
No 43
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=24.69 E-value=66 Score=25.23 Aligned_cols=62 Identities=11% Similarity=0.249 Sum_probs=34.8
Q ss_pred ccccchHHHhhhccccchhhhhcccccccccccccCCcccc---cccccccccCCCCCHHHHHHHHHHHHHHHH
Q 045317 11 NKIYDETEIAQNFKEGEAIEKEENHRVHKTFTSQENPEHVQ---EDGNREAAAIIDMKFKKKKALLEFRCMVED 81 (460)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ls~~q~~aL~elr~~l~~ 81 (460)
+++||+|.+.....-|-+.. .|.+.+.+.+-. -+.+.....+.+|++.|++.|.+-.+...+
T Consensus 28 G~VYDVT~~~~~~hPGG~~~---------~~AG~DaT~~f~~~~~~~~~l~~dl~~L~~~e~~~l~~W~~~f~~ 92 (102)
T 1j03_A 28 GRVFDVTTGKSFYGSGGDYS---------MFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEA 92 (102)
T ss_dssp TEEEECGGGHHHHSSSSTTT---------TTTTSBCHHHHHHTCCCSSSCCSSCSSCCHHHHHHHHHHHHHHHT
T ss_pred CEEEECCCCccccCCCCccc---------ccccchHHHHHHHcCCChhhccCcccCCCHHHHHHHHHHHHHHhc
Confidence 46999999844445555532 222222221110 011122467889999999888886666543
No 44
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.66 E-value=68 Score=23.03 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHH
Q 045317 126 GTDIVLLKFLKAKDYKVHDAFEML 149 (460)
Q Consensus 126 ~~D~~LLRFLrarkfdv~kA~~~l 149 (460)
.++.....||.+.+||++.|+..+
T Consensus 30 ~~~~~A~~~Le~~~WdLe~Al~~f 53 (66)
T 2dzl_A 30 CAADQAKQLLQAAHWQFETALSTF 53 (66)
T ss_dssp CCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 467789999999999999999876
No 45
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=24.49 E-value=75 Score=21.52 Aligned_cols=26 Identities=23% Similarity=0.023 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHH
Q 045317 125 EGTDIVLLKFLKAKDYKVHDAFEMLR 150 (460)
Q Consensus 125 ~~~D~~LLRFLrarkfdv~kA~~~l~ 150 (460)
+.+....++-|++.++|+++|.+.|.
T Consensus 24 F~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 24 FLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 33677789999999999999998874
No 46
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.45 E-value=96 Score=21.96 Aligned_cols=27 Identities=11% Similarity=0.050 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 045317 126 GTDIVLLKFLKAKDYKVHDAFEMLRKT 152 (460)
Q Consensus 126 ~~D~~LLRFLrarkfdv~kA~~~l~~~ 152 (460)
++.....+-|++.++|+++|.+.|..+
T Consensus 21 F~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 21 FSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 455667889999999999999887654
No 47
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=24.19 E-value=2.1e+02 Score=23.92 Aligned_cols=58 Identities=3% Similarity=0.015 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhccccCCCCCCCCChhHHHHHhhhhhhhhhccCCCCCCCCCCCCHHHHHHHHHhcCCCH
Q 045317 63 DMKFKKKKALLEFRCMVEDAVLGNYLLGKPPRSHSPKEAALARSQLKKITLWGVPLLPSKAHEGTDIVLLKFLKAKDYKV 142 (460)
Q Consensus 63 ~ls~~q~~aL~elr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~lp~~~~~~~D~~LLRFLrarkfdv 142 (460)
+||++|++.|..+++.-...... +. .....-|...+.+-+||-
T Consensus 45 ~LTdeQkqqir~L~~~~r~~~~~----------------------------------~~---~~~r~~l~~Li~ad~fDe 87 (145)
T 3itf_A 45 SLTEHQRQQMRDLMQQARHEQPP----------------------------------VN---VSELETMHRLVTAENFDE 87 (145)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCC----------------------------------CC---HHHHHHHHHHHTCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhh----------------------------------cc---HHHHHHHHHHHccCCCCH
Confidence 79999999999999877764200 00 011124566667888998
Q ss_pred HHHHHHHHHHHHHHH
Q 045317 143 HDAFEMLRKTLKWRR 157 (460)
Q Consensus 143 ~kA~~~l~~~l~wR~ 157 (460)
.++.+++...-.-+.
T Consensus 88 aa~ral~~~~~~~~~ 102 (145)
T 3itf_A 88 NAVRAQAEKMANEQI 102 (145)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777766554443
No 48
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=23.54 E-value=72 Score=23.36 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=23.0
Q ss_pred hhhhhccCCcceeeeeecCCCceEEEEE
Q 045317 350 SELIVRKNTAGSVRIPVAETGVTMMWDL 377 (460)
Q Consensus 350 ~~~~V~~g~~~~v~~~v~~~g~~l~W~f 377 (460)
+.+.+..|+...+...+..+...+.|..
T Consensus 4 t~v~~~~G~~v~l~C~vs~p~p~v~W~k 31 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHLSGPGGPVRWYK 31 (84)
T ss_dssp CCEEECTTSCEEEECCCSCCSTTCEEEE
T ss_pred eEEEEecCCCEEEEEEECCCCcEEEEEE
Confidence 4577889999999999877777799975
No 49
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.45 E-value=78 Score=21.10 Aligned_cols=26 Identities=23% Similarity=0.121 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 126 GTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 126 ~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
.+.....+=|++.++|+++|.+.|..
T Consensus 20 F~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 20 YERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp CCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46677899999999999999988754
No 50
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=22.27 E-value=2.6e+02 Score=22.83 Aligned_cols=90 Identities=12% Similarity=0.232 Sum_probs=51.0
Q ss_pred CccchhhhhccCCcceeeeeecCCCceEEEEEEeecce------eEEEEEEEeCCCCCeEEEEeccccccCCCCcccccE
Q 045317 346 EDRTSELIVRKNTAGSVRIPVAETGVTMMWDLTVLGWD------VSYKEEFIPDDEGSYRVLLQSEKEKKGGEGESMRNS 419 (460)
Q Consensus 346 ~d~~~~~~V~~g~~~~v~~~v~~~g~~l~W~f~t~~~D------I~Fgi~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~ 419 (460)
.|....+.++.|+...|.++-. |.+=..|.+...++. +.++-.|.|.+.+ ++---|-..=.
T Consensus 29 ~dn~~~I~v~~Ge~~~I~L~~N-PTTGY~W~~~~~~~~~L~~~~~~v~~~y~p~~~~------------~vGagG~~~w~ 95 (131)
T 2h7w_A 29 AHNGATLTVAVGELVEIQLPSN-PTTGFAWYFEGGTKESPNESMFTVENKYFPPDSK------------LLGAGGTEHFH 95 (131)
T ss_dssp GGTTCEEEECTTCEEEEEEEEC-GGGSCEEEBTTTBSSCSCTTTEEEEEEEECCTTC------------CTTCCEEEEEE
T ss_pred hhCCCEEEEeCCCEEEEEeCCC-CCCCeEEEEecCCCccccccceeecceeeeCCCC------------CcCCCcEEEEE
Confidence 3444678899999988888854 334489999764321 1111122221111 10000111126
Q ss_pred EEeCcCcEEEEEEECCC-c-----cceEEEEEEEE
Q 045317 420 FYISEPGKIVITIDNVT-L-----KNKRVYYRFKT 448 (460)
Q Consensus 420 ~~~~~~G~y~l~fdNs~-~-----~~K~v~Y~i~v 448 (460)
|.+.+||++.|.|.... + ..++....|.|
T Consensus 96 f~A~~~G~~~i~~~Y~RpWE~~~~~~~~f~l~V~V 130 (131)
T 2h7w_A 96 VTVKAAGTHAVNLTYMRPWTGPSHDSERFIVYLKA 130 (131)
T ss_dssp EEECSSEEEEEEEEEECTTTCCCTTCEEEEEEEEE
T ss_pred EEEccCceEEEEEEEECccCCCCCccEEEEEEEEE
Confidence 88999999999998876 2 23455555554
No 51
>2wra_A Lectin, BCLA; sugar binding protein, bacterial lectin, oligosaccharides; HET: MAN; 1.10A {Burkholderia cenocepacia} PDB: 2wr9_A* 2vnv_A*
Probab=21.95 E-value=1.7e+02 Score=23.64 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=54.2
Q ss_pred CChhhcccEEEeCCccchHhHhccCCCCCCcccCCCccCCCCCCCCCccchhhhhccCCcceeeeeecCCC--ceEEEEE
Q 045317 300 LSPRCKRKFVFARPAKVTKTLLKFISPENLPVEYGGLYRENDDFFPEDRTSELIVRKNTAGSVRIPVAETG--VTMMWDL 377 (460)
Q Consensus 300 L~~~t~~KI~~~~~~~~~~~L~e~Id~d~LP~~yGG~~~~~d~~~~~d~~~~~~V~~g~~~~v~~~v~~~g--~~l~W~f 377 (460)
||+.++=.+.++.+......+.=|||-++++.-|=|...... .-+.++..|. -.|.|+|...| +.|....
T Consensus 15 LP~ni~Fg~ta~~Nsa~~QtikvyIdd~~~~aT~tg~gt~d~-------~~t~~l~Sg~-GkVriev~~nGKps~l~s~~ 86 (128)
T 2wra_A 15 IPPNTDFRAIFFANAAEQQHIKLFIGDSQEPAAYHKLTTRDG-------PREATLNSGN-GKIRFEVSVNGKPSATDARL 86 (128)
T ss_dssp CCTTCEEEEEEEECCSSCEEEEEEETTCCSCSEEEEECGGGC-------CEEEEEECTT-SEEEEEEEETTEECEEEEEE
T ss_pred CCCCceEeEEEEeccCCceeEEEEeCCCceeeeeecccccCC-------cccEEEecCC-CeEEEEEEeCCccccceeee
Confidence 778888888887765556777778997777777777654321 1222333343 66777775444 5677776
Q ss_pred Eeecce--------eEEEEEEEe
Q 045317 378 TVLGWD--------VSYKEEFIP 392 (460)
Q Consensus 378 ~t~~~D--------I~Fgi~~~~ 392 (460)
.+-.+. +.|+|.-..
T Consensus 87 ~~l~~k~~dg~p~T~~~~ivgae 109 (128)
T 2wra_A 87 APINGKKSDGSPFTVNFGIVVSE 109 (128)
T ss_dssp CCEEEEC--CCEEEEEEEEEEEE
T ss_pred cccccccccCCCCceEEEEEEcc
Confidence 665555 777776443
No 52
>4dou_A Adiponectin; single-chain globular domain, calcium binding, C1Q-like DOMA growth factor, serum, hormone; 2.00A {Homo sapiens} PDB: 1c3h_A 1c28_A
Probab=21.33 E-value=50 Score=33.23 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.8
Q ss_pred ccccEEEeCcCcEEEEEEE
Q 045317 415 SMRNSFYISEPGKIVITID 433 (460)
Q Consensus 415 ~~~g~~~~~~~G~y~l~fd 433 (460)
+..|.|+|+.||+|.+.|.
T Consensus 59 ~~TG~Ftapv~GvY~Fsf~ 77 (442)
T 4dou_A 59 GSTGKFHCNIPGLYYFAYH 77 (442)
T ss_dssp TTTTEEECCSCEEEEEEEE
T ss_pred CCCCEEeCCCCEEEEEEEE
Confidence 3468999999999999996
No 53
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=20.93 E-value=52 Score=17.72 Aligned_cols=14 Identities=43% Similarity=0.639 Sum_probs=10.6
Q ss_pred CCHHHHHHHHHhcC
Q 045317 126 GTDIVLLKFLKAKD 139 (460)
Q Consensus 126 ~~D~~LLRFLrark 139 (460)
.-|..|||||-..+
T Consensus 3 ~kdhqllrylldkd 16 (21)
T 3dct_B 3 SKDHQLLRYLLDKD 16 (26)
T ss_pred hhHHHHHHHHHccc
Confidence 46788999997654
No 54
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.90 E-value=99 Score=19.73 Aligned_cols=26 Identities=15% Similarity=0.086 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 045317 126 GTDIVLLKFLKAKDYKVHDAFEMLRK 151 (460)
Q Consensus 126 ~~D~~LLRFLrarkfdv~kA~~~l~~ 151 (460)
.+.....+=|++.++|++.|.+.|..
T Consensus 16 F~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 16 FTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp SCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 35567888999999999999987753
No 55
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=20.10 E-value=64 Score=21.37 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=18.5
Q ss_pred CH-HHHHHHHHhcCCCHHHHHHH
Q 045317 127 TD-IVLLKFLKAKDYKVHDAFEM 148 (460)
Q Consensus 127 ~D-~~LLRFLrarkfdv~kA~~~ 148 (460)
+| .....||.+.+||++.|+..
T Consensus 19 ~d~~~A~~~Lea~nWDLe~Av~~ 41 (45)
T 3e21_A 19 ENIDEAITLLEQNNWDLVAAING 41 (45)
T ss_dssp CCHHHHHHHHHHTTTCHHHHHTT
T ss_pred CCHHHHHHHHHHcCCcHHHHHHH
Confidence 44 67899999999999999754
Done!