Query 045318
Match_columns 1388
No_of_seqs 725 out of 6319
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.7E-75 3.6E-80 720.1 49.1 790 26-885 18-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-57 2.4E-62 599.8 48.7 459 179-662 182-684 (1153)
3 PLN00113 leucine-rich repeat r 100.0 2.2E-34 4.8E-39 382.8 26.7 323 941-1360 283-607 (968)
4 PLN00113 leucine-rich repeat r 100.0 5.5E-34 1.2E-38 379.0 24.9 111 552-664 80-193 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 7.7E-34 1.7E-38 321.3 13.7 249 186-443 1-284 (287)
6 KOG4194 Membrane glycoprotein 99.9 7.4E-24 1.6E-28 231.9 6.9 377 566-1045 79-465 (873)
7 KOG0472 Leucine-rich repeat pr 99.9 4.5E-26 9.8E-31 238.5 -14.6 101 562-664 42-142 (565)
8 KOG0618 Serine/threonine phosp 99.9 2E-24 4.2E-29 250.2 -5.9 263 999-1332 240-508 (1081)
9 PLN03210 Resistant to P. syrin 99.9 5.8E-21 1.3E-25 252.7 22.7 375 934-1362 550-945 (1153)
10 KOG0444 Cytoskeletal regulator 99.9 1.6E-23 3.4E-28 230.2 -4.9 176 564-805 6-184 (1255)
11 KOG4194 Membrane glycoprotein 99.8 3.4E-22 7.4E-27 219.1 5.2 360 567-1084 54-427 (873)
12 KOG0618 Serine/threonine phosp 99.8 6.6E-23 1.4E-27 237.6 -6.4 97 566-664 46-142 (1081)
13 KOG0472 Leucine-rich repeat pr 99.8 1.5E-23 3.2E-28 219.7 -11.3 231 562-805 65-308 (565)
14 KOG0444 Cytoskeletal regulator 99.8 1.7E-21 3.6E-26 214.5 -6.3 205 557-805 47-256 (1255)
15 PRK15387 E3 ubiquitin-protein 99.5 1.8E-13 3.9E-18 166.9 14.0 73 565-646 201-273 (788)
16 PRK15387 E3 ubiquitin-protein 99.5 3.4E-13 7.3E-18 164.5 15.5 171 1115-1334 284-455 (788)
17 KOG4237 Extracellular matrix p 99.5 2E-15 4.3E-20 159.4 -3.5 118 547-665 73-194 (498)
18 KOG4237 Extracellular matrix p 99.5 3.3E-15 7.1E-20 157.8 -1.9 103 567-669 69-174 (498)
19 PRK15370 E3 ubiquitin-protein 99.3 2.6E-12 5.6E-17 158.3 8.9 81 565-653 178-258 (754)
20 PRK15370 E3 ubiquitin-protein 99.3 1.2E-11 2.6E-16 152.4 12.3 162 1115-1312 264-426 (754)
21 KOG0617 Ras suppressor protein 99.3 8.7E-14 1.9E-18 129.4 -5.5 97 564-661 32-129 (264)
22 KOG4658 Apoptotic ATPase [Sign 99.2 5.1E-12 1.1E-16 158.2 4.9 123 563-686 543-670 (889)
23 KOG0617 Ras suppressor protein 99.2 6.2E-13 1.3E-17 123.8 -3.7 82 583-666 28-109 (264)
24 TIGR03015 pepcterm_ATPase puta 99.1 6.8E-09 1.5E-13 116.1 21.0 181 211-396 44-242 (269)
25 PRK00411 cdc6 cell division co 99.1 4.5E-09 9.7E-14 124.7 19.1 211 179-394 28-257 (394)
26 PRK04841 transcriptional regul 99.0 5.3E-09 1.1E-13 139.4 21.3 264 208-490 30-332 (903)
27 PF01637 Arch_ATPase: Archaeal 99.0 2E-09 4.2E-14 118.2 10.5 195 183-391 1-233 (234)
28 PF05729 NACHT: NACHT domain 98.9 1E-08 2.2E-13 105.5 10.6 143 211-358 1-162 (166)
29 TIGR02928 orc1/cdc6 family rep 98.8 1E-07 2.3E-12 111.8 19.9 207 181-391 15-246 (365)
30 cd00116 LRR_RI Leucine-rich re 98.8 2.2E-09 4.8E-14 124.1 1.6 86 561-646 47-148 (319)
31 PRK00080 ruvB Holliday junctio 98.8 2.8E-07 6.1E-12 105.4 18.6 193 181-394 25-224 (328)
32 cd00116 LRR_RI Leucine-rich re 98.7 1.2E-09 2.6E-14 126.3 -1.1 98 549-646 6-119 (319)
33 TIGR00635 ruvB Holliday juncti 98.7 6.2E-07 1.3E-11 102.2 19.3 193 181-394 4-203 (305)
34 KOG4341 F-box protein containi 98.7 1.2E-09 2.6E-14 117.6 -3.8 287 1001-1342 139-444 (483)
35 PRK15386 type III secretion pr 98.7 9.8E-08 2.1E-12 106.8 10.6 36 1325-1361 178-214 (426)
36 PRK06893 DNA replication initi 98.6 4.7E-07 1E-11 97.2 14.8 151 211-392 40-203 (229)
37 PRK13342 recombination factor 98.6 1.4E-06 3.1E-11 102.7 19.7 177 181-393 12-197 (413)
38 PTZ00112 origin recognition co 98.6 6.6E-07 1.4E-11 106.8 16.1 214 180-397 754-987 (1164)
39 COG2909 MalT ATP-dependent tra 98.6 7.5E-07 1.6E-11 105.8 16.4 276 191-490 25-338 (894)
40 COG2256 MGS1 ATPase related to 98.6 6.9E-07 1.5E-11 97.0 14.8 172 178-386 27-206 (436)
41 KOG4341 F-box protein containi 98.6 6E-10 1.3E-14 119.9 -9.6 158 1202-1362 268-441 (483)
42 PRK15386 type III secretion pr 98.5 5.3E-07 1.2E-11 101.0 10.7 136 999-1170 51-186 (426)
43 COG4886 Leucine-rich repeat (L 98.4 1.5E-07 3.3E-12 111.8 5.4 102 561-664 112-214 (394)
44 PF14580 LRR_9: Leucine-rich r 98.4 1.3E-07 2.7E-12 94.7 3.7 130 531-670 14-151 (175)
45 PRK05564 DNA polymerase III su 98.4 8.8E-06 1.9E-10 92.4 17.7 180 181-392 4-190 (313)
46 PF13401 AAA_22: AAA domain; P 98.4 5.4E-07 1.2E-11 88.1 6.8 118 209-328 3-125 (131)
47 PF14580 LRR_9: Leucine-rich r 98.4 8.5E-08 1.8E-12 95.9 0.9 82 562-646 16-99 (175)
48 TIGR03420 DnaA_homol_Hda DnaA 98.4 3.6E-06 7.7E-11 91.3 13.3 169 186-393 22-202 (226)
49 PF05496 RuvB_N: Holliday junc 98.3 6E-06 1.3E-10 84.1 13.1 175 181-390 24-219 (233)
50 KOG0532 Leucine-rich repeat (L 98.3 1.8E-08 3.9E-13 112.7 -5.9 168 547-727 81-248 (722)
51 cd01128 rho_factor Transcripti 98.3 7E-07 1.5E-11 95.5 6.2 90 209-299 15-113 (249)
52 PF13173 AAA_14: AAA domain 98.3 1.9E-06 4.2E-11 83.2 8.5 119 211-351 3-127 (128)
53 PF13855 LRR_8: Leucine rich r 98.3 6.7E-07 1.5E-11 73.1 4.4 57 566-622 2-60 (61)
54 KOG1259 Nischarin, modulator o 98.3 1.4E-07 3E-12 96.9 0.1 41 770-810 373-415 (490)
55 PRK14961 DNA polymerase III su 98.3 2E-05 4.3E-10 91.2 17.9 180 181-389 16-217 (363)
56 PRK07003 DNA polymerase III su 98.3 2.2E-05 4.8E-10 94.1 18.3 181 181-393 16-222 (830)
57 cd00009 AAA The AAA+ (ATPases 98.3 4.2E-06 9E-11 84.2 10.9 125 184-330 1-131 (151)
58 KOG1259 Nischarin, modulator o 98.3 1.2E-07 2.6E-12 97.3 -0.5 81 564-646 283-363 (490)
59 PRK14963 DNA polymerase III su 98.3 3.4E-06 7.3E-11 100.3 11.0 203 181-395 14-221 (504)
60 TIGR02903 spore_lon_C ATP-depe 98.3 1.2E-05 2.7E-10 98.6 16.1 203 181-395 154-398 (615)
61 KOG0532 Leucine-rich repeat (L 98.3 6.7E-08 1.5E-12 108.3 -3.4 99 563-664 73-171 (722)
62 KOG3207 Beta-tubulin folding c 98.3 3.8E-07 8.2E-12 99.4 2.3 62 585-646 118-183 (505)
63 PRK12402 replication factor C 98.3 1.6E-05 3.4E-10 92.4 16.1 196 181-391 15-225 (337)
64 PRK14960 DNA polymerase III su 98.2 2.5E-05 5.5E-10 92.6 17.3 192 181-390 15-217 (702)
65 PRK04195 replication factor C 98.2 4.4E-05 9.6E-10 92.0 20.0 180 181-390 14-200 (482)
66 PTZ00202 tuzin; Provisional 98.2 4.2E-05 9E-10 85.1 17.7 169 176-358 257-433 (550)
67 PF13191 AAA_16: AAA ATPase do 98.2 1.7E-06 3.6E-11 90.7 6.7 51 182-237 1-51 (185)
68 PRK09376 rho transcription ter 98.2 2.4E-06 5.1E-11 94.7 7.7 90 209-299 168-266 (416)
69 KOG3207 Beta-tubulin folding c 98.2 4.5E-07 9.7E-12 98.8 2.1 148 511-664 121-276 (505)
70 PRK14949 DNA polymerase III su 98.2 2.5E-05 5.4E-10 95.7 16.6 183 181-392 16-221 (944)
71 PLN03025 replication factor C 98.2 2.1E-05 4.7E-10 89.5 14.9 185 181-392 13-201 (319)
72 PRK13341 recombination factor 98.2 1E-05 2.2E-10 100.1 12.8 168 181-386 28-211 (725)
73 PRK06645 DNA polymerase III su 98.2 3.9E-05 8.5E-10 90.8 17.1 194 181-389 21-226 (507)
74 PLN03150 hypothetical protein; 98.2 1.7E-06 3.8E-11 107.2 5.8 92 566-657 419-512 (623)
75 PRK12323 DNA polymerase III su 98.2 4.9E-05 1.1E-09 90.0 17.2 199 181-392 16-225 (700)
76 PRK08727 hypothetical protein; 98.2 4.4E-05 9.6E-10 82.2 15.6 148 211-389 42-201 (233)
77 PLN03150 hypothetical protein; 98.1 2.1E-06 4.6E-11 106.5 5.9 105 547-651 424-531 (623)
78 COG1474 CDC6 Cdc6-related prot 98.1 0.00014 2.9E-09 83.0 19.8 207 182-393 18-239 (366)
79 PRK14957 DNA polymerase III su 98.1 4.2E-05 9.1E-10 91.1 16.2 186 181-395 16-224 (546)
80 PRK14962 DNA polymerase III su 98.1 6.2E-05 1.3E-09 88.9 17.1 201 181-410 14-240 (472)
81 PF13855 LRR_8: Leucine rich r 98.1 2.6E-06 5.7E-11 69.6 3.8 59 588-646 1-60 (61)
82 PRK00440 rfc replication facto 98.1 6.5E-05 1.4E-09 86.5 16.9 180 181-389 17-200 (319)
83 PRK14956 DNA polymerase III su 98.0 2.1E-05 4.6E-10 90.8 11.1 194 181-388 18-218 (484)
84 KOG2028 ATPase related to the 98.0 2.6E-05 5.7E-10 82.9 10.7 129 208-358 160-293 (554)
85 PRK09087 hypothetical protein; 98.0 3.4E-05 7.4E-10 82.1 11.9 139 211-391 45-194 (226)
86 PRK08903 DnaA regulatory inact 98.0 5.3E-05 1.1E-09 82.0 13.6 152 210-396 42-203 (227)
87 PRK08084 DNA replication initi 98.0 7.6E-05 1.6E-09 80.5 14.6 151 211-392 46-209 (235)
88 PRK05896 DNA polymerase III su 98.0 0.00011 2.5E-09 87.4 16.9 196 181-394 16-223 (605)
89 PRK07940 DNA polymerase III su 98.0 0.00013 2.7E-09 84.1 16.7 184 181-392 5-213 (394)
90 TIGR02397 dnaX_nterm DNA polym 98.0 0.00021 4.5E-09 83.7 19.1 183 181-393 14-219 (355)
91 COG4886 Leucine-rich repeat (L 98.0 3.4E-06 7.4E-11 100.3 3.8 123 534-664 114-237 (394)
92 PRK07994 DNA polymerase III su 98.0 8.1E-05 1.8E-09 90.1 15.3 193 181-391 16-219 (647)
93 PRK08691 DNA polymerase III su 98.0 9.6E-05 2.1E-09 88.8 15.7 179 181-391 16-219 (709)
94 PRK14951 DNA polymerase III su 98.0 0.00014 3E-09 88.0 17.3 196 181-391 16-224 (618)
95 KOG2227 Pre-initiation complex 98.0 0.00014 3.1E-09 80.8 15.6 214 179-396 148-376 (529)
96 PRK14964 DNA polymerase III su 98.0 0.00014 3E-09 85.4 16.6 181 181-389 13-214 (491)
97 TIGR00767 rho transcription te 98.0 2.4E-05 5.3E-10 87.5 9.5 90 209-299 167-265 (415)
98 TIGR00678 holB DNA polymerase 98.0 0.00019 4.1E-09 74.9 15.8 90 288-387 95-186 (188)
99 PRK07471 DNA polymerase III su 97.9 0.00032 6.8E-09 80.3 18.2 194 181-393 19-239 (365)
100 PRK14958 DNA polymerase III su 97.9 0.00013 2.9E-09 87.2 15.6 183 181-391 16-219 (509)
101 PRK09112 DNA polymerase III su 97.9 0.00021 4.6E-09 81.2 16.2 197 180-393 22-241 (351)
102 TIGR01242 26Sp45 26S proteasom 97.9 5.3E-05 1.2E-09 88.1 11.6 182 180-386 121-328 (364)
103 PF05621 TniB: Bacterial TniB 97.9 0.00027 5.9E-09 76.0 15.6 193 190-388 46-257 (302)
104 KOG1909 Ran GTPase-activating 97.9 2.5E-06 5.4E-11 90.6 -0.1 90 558-647 23-132 (382)
105 PF00308 Bac_DnaA: Bacterial d 97.9 0.00016 3.5E-09 76.8 13.5 163 210-392 34-208 (219)
106 PF12799 LRR_4: Leucine Rich r 97.9 1E-05 2.2E-10 60.0 3.1 39 566-604 2-40 (44)
107 PRK09111 DNA polymerase III su 97.9 0.00024 5.1E-09 86.3 16.2 197 181-392 24-233 (598)
108 PRK14955 DNA polymerase III su 97.9 0.00014 3.1E-09 85.2 13.9 201 181-392 16-229 (397)
109 PRK14969 DNA polymerase III su 97.9 0.00031 6.8E-09 84.7 17.1 184 181-392 16-221 (527)
110 PRK11331 5-methylcytosine-spec 97.9 7.3E-05 1.6E-09 85.3 10.8 109 181-303 175-286 (459)
111 PRK14959 DNA polymerase III su 97.9 0.00035 7.5E-09 83.9 17.0 198 181-396 16-225 (624)
112 PRK05642 DNA replication initi 97.8 0.00025 5.4E-09 76.4 14.3 152 211-393 46-209 (234)
113 COG3899 Predicted ATPase [Gene 97.8 0.00011 2.3E-09 93.8 13.2 207 183-399 2-267 (849)
114 PRK07764 DNA polymerase III su 97.8 0.00043 9.2E-09 87.1 16.7 177 181-389 15-218 (824)
115 COG2255 RuvB Holliday junction 97.8 0.00057 1.2E-08 71.2 14.4 173 181-388 26-219 (332)
116 KOG0989 Replication factor C, 97.8 0.00018 4E-09 75.6 11.0 192 181-395 36-234 (346)
117 PRK07133 DNA polymerase III su 97.8 0.00093 2E-08 81.6 18.5 192 181-393 18-221 (725)
118 PRK14970 DNA polymerase III su 97.8 0.00078 1.7E-08 78.8 17.7 186 181-394 17-212 (367)
119 PRK14952 DNA polymerase III su 97.7 0.00088 1.9E-08 80.9 18.2 187 181-396 13-224 (584)
120 PRK14087 dnaA chromosomal repl 97.7 0.00052 1.1E-08 81.2 16.0 167 211-393 142-320 (450)
121 PRK14950 DNA polymerase III su 97.7 0.00044 9.5E-09 85.2 15.6 195 181-392 16-221 (585)
122 CHL00181 cbbX CbbX; Provisiona 97.7 0.00094 2E-08 74.0 16.7 133 211-359 60-209 (287)
123 PRK14953 DNA polymerase III su 97.7 0.0014 3E-08 78.1 18.5 184 181-393 16-221 (486)
124 PRK14954 DNA polymerase III su 97.7 0.001 2.3E-08 80.9 17.6 202 181-393 16-230 (620)
125 PRK08451 DNA polymerase III su 97.7 0.0013 2.8E-08 78.2 17.7 179 181-392 14-218 (535)
126 TIGR02639 ClpA ATP-dependent C 97.7 0.00031 6.7E-09 89.3 13.6 157 181-359 182-358 (731)
127 KOG2543 Origin recognition com 97.7 0.0011 2.4E-08 72.1 15.4 168 179-358 4-192 (438)
128 PRK06620 hypothetical protein; 97.6 0.00094 2E-08 70.5 14.4 134 211-388 45-185 (214)
129 PRK14971 DNA polymerase III su 97.6 0.0012 2.7E-08 80.9 17.4 180 181-389 17-219 (614)
130 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00015 3.3E-09 92.5 9.8 155 181-358 187-362 (852)
131 PRK14948 DNA polymerase III su 97.6 0.0014 3.1E-08 80.3 17.7 196 181-392 16-222 (620)
132 PRK06305 DNA polymerase III su 97.6 0.0014 2.9E-08 77.7 16.7 183 181-393 17-224 (451)
133 KOG1909 Ran GTPase-activating 97.6 1.2E-05 2.7E-10 85.6 -0.5 226 547-805 36-309 (382)
134 KOG2120 SCF ubiquitin ligase, 97.6 2E-06 4.3E-11 88.8 -6.3 160 999-1172 209-374 (419)
135 PHA02544 44 clamp loader, smal 97.6 0.0006 1.3E-08 78.1 13.2 147 181-356 21-170 (316)
136 TIGR02881 spore_V_K stage V sp 97.6 0.0008 1.7E-08 74.2 13.4 160 182-359 7-191 (261)
137 PF12799 LRR_4: Leucine Rich r 97.6 5.3E-05 1.1E-09 56.3 2.7 35 588-622 1-35 (44)
138 PF05673 DUF815: Protein of un 97.6 0.001 2.2E-08 69.2 12.8 126 178-332 24-154 (249)
139 COG3903 Predicted ATPase [Gene 97.5 5.9E-05 1.3E-09 83.2 3.8 181 209-399 13-196 (414)
140 KOG0531 Protein phosphatase 1, 97.5 2E-05 4.2E-10 93.7 0.0 102 559-664 89-191 (414)
141 TIGR00362 DnaA chromosomal rep 97.5 0.0019 4.2E-08 76.4 16.8 158 210-389 136-307 (405)
142 PRK03992 proteasome-activating 97.5 0.00066 1.4E-08 79.2 12.4 180 180-385 130-336 (389)
143 COG5238 RNA1 Ran GTPase-activa 97.5 8.8E-06 1.9E-10 83.0 -2.7 87 560-646 25-131 (388)
144 PRK14965 DNA polymerase III su 97.5 0.0018 3.9E-08 79.3 16.1 197 181-395 16-224 (576)
145 CHL00095 clpC Clp protease ATP 97.5 0.00045 9.8E-09 88.8 11.3 155 181-357 179-352 (821)
146 PRK06647 DNA polymerase III su 97.5 0.0045 9.6E-08 75.1 18.8 193 181-391 16-219 (563)
147 TIGR02880 cbbX_cfxQ probable R 97.5 0.0012 2.6E-08 73.3 12.9 132 212-359 60-208 (284)
148 KOG2120 SCF ubiquitin ligase, 97.4 1E-05 2.2E-10 83.8 -3.3 68 1299-1366 311-388 (419)
149 PRK05563 DNA polymerase III su 97.4 0.0047 1E-07 75.4 17.7 191 181-389 16-217 (559)
150 PRK11034 clpA ATP-dependent Cl 97.4 0.0014 3E-08 82.1 13.2 157 181-359 186-362 (758)
151 PRK14088 dnaA chromosomal repl 97.4 0.0021 4.5E-08 76.1 14.0 157 211-387 131-300 (440)
152 PRK07399 DNA polymerase III su 97.3 0.006 1.3E-07 68.5 16.7 198 181-392 4-221 (314)
153 PF00004 AAA: ATPase family as 97.3 0.00041 8.8E-09 67.8 6.5 21 213-233 1-21 (132)
154 KOG0531 Protein phosphatase 1, 97.3 4.3E-05 9.4E-10 90.8 -0.5 98 563-664 70-167 (414)
155 TIGR03346 chaperone_ClpB ATP-d 97.3 0.002 4.4E-08 83.2 14.2 157 181-359 173-349 (852)
156 PF14516 AAA_35: AAA-like doma 97.3 0.011 2.3E-07 67.6 18.4 201 180-399 10-246 (331)
157 COG0593 DnaA ATPase involved i 97.3 0.0025 5.4E-08 72.4 12.8 135 209-360 112-258 (408)
158 PRK00149 dnaA chromosomal repl 97.3 0.0044 9.6E-08 74.3 15.8 157 210-388 148-318 (450)
159 PRK12422 chromosomal replicati 97.3 0.0018 3.8E-08 76.4 11.9 154 210-385 141-306 (445)
160 KOG4579 Leucine-rich repeat (L 97.2 6.9E-05 1.5E-09 68.6 0.0 95 557-653 45-140 (177)
161 TIGR00602 rad24 checkpoint pro 97.2 0.002 4.2E-08 78.4 11.5 51 180-233 83-133 (637)
162 PRK14086 dnaA chromosomal repl 97.2 0.0095 2.1E-07 71.5 17.0 156 211-386 315-482 (617)
163 smart00382 AAA ATPases associa 97.2 0.0015 3.2E-08 65.0 9.0 88 211-302 3-91 (148)
164 PRK10865 protein disaggregatio 97.2 0.0036 7.8E-08 80.5 14.1 156 181-359 178-354 (857)
165 KOG4579 Leucine-rich repeat (L 97.1 4.2E-05 9.2E-10 69.9 -2.4 98 565-664 27-128 (177)
166 PRK05707 DNA polymerase III su 97.1 0.0073 1.6E-07 68.2 14.6 97 288-392 105-203 (328)
167 PTZ00361 26 proteosome regulat 97.1 0.0011 2.3E-08 77.4 8.0 159 181-359 183-367 (438)
168 PRK10536 hypothetical protein; 97.1 0.0055 1.2E-07 64.8 12.5 136 181-330 55-214 (262)
169 PRK08116 hypothetical protein; 97.1 0.0015 3.1E-08 71.8 8.6 104 211-329 115-221 (268)
170 KOG2004 Mitochondrial ATP-depe 97.1 0.0086 1.9E-07 70.5 14.9 105 180-300 410-516 (906)
171 KOG1859 Leucine-rich repeat pr 97.1 2.1E-05 4.6E-10 91.1 -6.3 60 590-652 166-225 (1096)
172 PTZ00454 26S protease regulato 97.1 0.0043 9.4E-08 71.9 12.2 180 181-385 145-350 (398)
173 PF04665 Pox_A32: Poxvirus A32 97.1 0.00085 1.9E-08 70.6 5.8 37 211-249 14-50 (241)
174 KOG0991 Replication factor C, 97.0 0.0096 2.1E-07 60.0 12.1 45 181-233 27-71 (333)
175 PRK08118 topology modulation p 97.0 0.00036 7.8E-09 70.6 2.3 34 212-245 3-37 (167)
176 PF13177 DNA_pol3_delta2: DNA 97.0 0.01 2.3E-07 59.6 12.7 139 185-347 1-162 (162)
177 TIGR03689 pup_AAA proteasome A 97.0 0.0081 1.8E-07 71.2 13.6 169 181-359 182-378 (512)
178 COG3267 ExeA Type II secretory 96.9 0.033 7.2E-07 57.9 15.7 181 209-394 50-247 (269)
179 CHL00176 ftsH cell division pr 96.9 0.012 2.5E-07 72.5 14.5 179 181-384 183-386 (638)
180 KOG3665 ZYG-1-like serine/thre 96.9 0.00079 1.7E-08 83.3 4.5 110 533-647 145-262 (699)
181 COG1222 RPT1 ATP-dependent 26S 96.9 0.018 4E-07 62.5 13.8 191 181-397 151-372 (406)
182 PRK08058 DNA polymerase III su 96.9 0.022 4.7E-07 65.0 15.5 149 182-358 6-181 (329)
183 TIGR02640 gas_vesic_GvpN gas v 96.8 0.024 5.1E-07 62.5 15.2 42 212-258 23-64 (262)
184 TIGR01241 FtsH_fam ATP-depende 96.8 0.019 4.1E-07 69.8 15.8 180 181-385 55-259 (495)
185 TIGR02639 ClpA ATP-dependent C 96.8 0.012 2.5E-07 75.1 13.9 123 181-315 454-579 (731)
186 PRK06090 DNA polymerase III su 96.8 0.056 1.2E-06 60.4 17.5 166 188-392 10-201 (319)
187 PRK13531 regulatory ATPase Rav 96.8 0.007 1.5E-07 70.1 10.5 151 182-358 21-193 (498)
188 COG0466 Lon ATP-dependent Lon 96.7 0.011 2.4E-07 70.1 12.1 164 180-359 322-508 (782)
189 TIGR00763 lon ATP-dependent pr 96.7 0.046 9.9E-07 70.2 19.0 52 180-233 319-370 (775)
190 PRK08769 DNA polymerase III su 96.7 0.054 1.2E-06 60.6 17.0 96 288-393 112-209 (319)
191 KOG0741 AAA+-type ATPase [Post 96.7 0.02 4.4E-07 64.9 13.3 148 208-382 536-704 (744)
192 COG1373 Predicted ATPase (AAA+ 96.7 0.021 4.5E-07 66.7 14.3 119 212-355 39-163 (398)
193 PRK12608 transcription termina 96.7 0.0075 1.6E-07 67.6 10.1 101 190-298 120-229 (380)
194 KOG2982 Uncharacterized conser 96.7 0.00077 1.7E-08 70.2 2.0 80 566-646 46-132 (418)
195 KOG2982 Uncharacterized conser 96.6 0.0003 6.4E-09 73.2 -1.4 82 562-646 68-157 (418)
196 PRK06871 DNA polymerase III su 96.6 0.068 1.5E-06 59.9 16.8 177 189-389 10-200 (325)
197 PRK10865 protein disaggregatio 96.6 0.013 2.7E-07 75.6 12.6 138 181-328 568-720 (857)
198 PRK07952 DNA replication prote 96.6 0.0077 1.7E-07 64.5 8.9 102 211-328 100-204 (244)
199 PRK08181 transposase; Validate 96.6 0.004 8.6E-08 67.8 6.8 101 211-329 107-209 (269)
200 COG2607 Predicted ATPase (AAA+ 96.6 0.033 7.1E-07 57.0 12.4 121 179-328 58-182 (287)
201 PRK08939 primosomal protein Dn 96.5 0.009 1.9E-07 66.7 9.1 122 185-328 135-260 (306)
202 KOG1514 Origin recognition com 96.5 0.057 1.2E-06 64.1 15.7 206 181-395 396-624 (767)
203 PF01695 IstB_IS21: IstB-like 96.5 0.003 6.4E-08 64.5 4.9 100 211-329 48-150 (178)
204 PRK06921 hypothetical protein; 96.5 0.0081 1.8E-07 65.8 8.5 100 210-328 117-224 (266)
205 TIGR03346 chaperone_ClpB ATP-d 96.5 0.012 2.7E-07 76.1 11.4 138 181-328 565-717 (852)
206 PRK06526 transposase; Provisio 96.5 0.0041 8.9E-08 67.4 6.0 100 211-329 99-201 (254)
207 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0079 1.7E-07 77.1 9.2 139 180-328 565-718 (852)
208 PF10443 RNA12: RNA12 protein; 96.4 0.06 1.3E-06 61.1 14.7 200 186-403 1-289 (431)
209 PF02562 PhoH: PhoH-like prote 96.4 0.013 2.7E-07 60.5 8.7 132 185-330 4-157 (205)
210 PRK07261 topology modulation p 96.4 0.0066 1.4E-07 61.8 6.7 66 212-300 2-68 (171)
211 PRK09183 transposase/IS protei 96.4 0.0079 1.7E-07 65.7 7.6 101 211-329 103-206 (259)
212 COG0542 clpA ATP-binding subun 96.4 0.0078 1.7E-07 73.6 8.2 125 181-316 491-620 (786)
213 PF07728 AAA_5: AAA domain (dy 96.4 0.0018 3.8E-08 63.8 2.0 88 213-313 2-89 (139)
214 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0039 8.4E-08 69.6 4.6 52 181-234 51-102 (361)
215 PRK10787 DNA-binding ATP-depen 96.3 0.036 7.8E-07 70.3 13.7 166 180-359 321-506 (784)
216 COG0470 HolB ATPase involved i 96.3 0.02 4.4E-07 66.1 10.7 142 182-345 2-167 (325)
217 KOG1947 Leucine rich repeat pr 96.2 0.00038 8.2E-09 85.9 -4.3 60 1305-1364 380-444 (482)
218 PF07693 KAP_NTPase: KAP famil 96.2 0.11 2.3E-06 60.0 16.2 43 187-234 2-44 (325)
219 KOG2228 Origin recognition com 96.2 0.036 7.8E-07 59.6 10.8 171 182-359 25-219 (408)
220 PRK12377 putative replication 96.2 0.0062 1.3E-07 65.4 5.4 101 211-328 102-205 (248)
221 TIGR02237 recomb_radB DNA repa 96.2 0.015 3.2E-07 62.1 8.2 49 208-259 10-58 (209)
222 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.022 4.7E-07 62.1 9.7 57 208-265 17-77 (235)
223 TIGR03499 FlhF flagellar biosy 96.2 0.031 6.7E-07 62.1 10.8 86 209-298 193-281 (282)
224 KOG1859 Leucine-rich repeat pr 96.2 0.00093 2E-08 78.0 -1.3 104 533-646 184-290 (1096)
225 PRK09361 radB DNA repair and r 96.1 0.019 4.1E-07 61.9 8.9 47 208-257 21-67 (225)
226 PRK07993 DNA polymerase III su 96.1 0.17 3.7E-06 57.4 16.5 181 188-392 9-204 (334)
227 PRK04296 thymidine kinase; Pro 96.1 0.015 3.1E-07 60.5 7.2 113 211-330 3-117 (190)
228 KOG1947 Leucine rich repeat pr 96.1 0.0015 3.3E-08 80.5 -0.0 116 967-1087 186-309 (482)
229 KOG0733 Nuclear AAA ATPase (VC 96.1 0.086 1.9E-06 61.3 13.6 100 181-300 190-293 (802)
230 KOG3665 ZYG-1-like serine/thre 96.0 0.0033 7.1E-08 78.0 2.6 92 554-646 136-231 (699)
231 PRK05541 adenylylsulfate kinas 96.0 0.0093 2E-07 61.4 5.5 37 208-246 5-41 (176)
232 PF00158 Sigma54_activat: Sigm 96.0 0.025 5.5E-07 57.0 8.3 130 183-329 1-144 (168)
233 cd00561 CobA_CobO_BtuR ATP:cor 96.0 0.022 4.8E-07 56.1 7.6 117 211-330 3-139 (159)
234 PF13207 AAA_17: AAA domain; P 96.0 0.0049 1.1E-07 59.0 3.0 22 212-233 1-22 (121)
235 CHL00095 clpC Clp protease ATP 96.0 0.026 5.7E-07 72.9 10.5 138 181-328 509-661 (821)
236 cd01393 recA_like RecA is a b 96.0 0.034 7.4E-07 60.1 9.9 91 208-299 17-124 (226)
237 TIGR02902 spore_lonB ATP-depen 95.9 0.025 5.5E-07 68.8 9.4 44 182-233 66-109 (531)
238 PRK06964 DNA polymerase III su 95.9 0.18 3.9E-06 57.1 15.2 94 288-393 131-226 (342)
239 PF00448 SRP54: SRP54-type pro 95.8 0.025 5.3E-07 58.8 7.7 56 211-268 2-58 (196)
240 COG0542 clpA ATP-binding subun 95.8 0.08 1.7E-06 65.2 12.9 155 181-358 170-345 (786)
241 cd01394 radB RadB. The archaea 95.8 0.032 6.9E-07 59.9 8.8 44 208-253 17-60 (218)
242 COG1875 NYN ribonuclease and A 95.8 0.037 8.1E-07 60.3 8.7 137 183-330 226-389 (436)
243 cd01133 F1-ATPase_beta F1 ATP 95.8 0.025 5.4E-07 61.1 7.4 87 210-298 69-172 (274)
244 PRK04132 replication factor C 95.8 0.18 4E-06 63.6 16.0 152 218-389 574-728 (846)
245 CHL00195 ycf46 Ycf46; Provisio 95.7 0.044 9.6E-07 65.2 10.2 182 181-386 228-429 (489)
246 PRK06835 DNA replication prote 95.7 0.023 4.9E-07 64.0 7.4 102 211-328 184-288 (329)
247 PRK06696 uridine kinase; Valid 95.7 0.013 2.8E-07 62.9 5.3 44 185-233 2-45 (223)
248 TIGR02238 recomb_DMC1 meiotic 95.7 0.037 8.1E-07 62.0 8.8 59 208-267 94-156 (313)
249 COG2812 DnaX DNA polymerase II 95.7 0.037 8E-07 65.2 9.0 189 181-387 16-215 (515)
250 TIGR01243 CDC48 AAA family ATP 95.7 0.12 2.6E-06 66.4 14.4 181 181-386 453-657 (733)
251 TIGR01243 CDC48 AAA family ATP 95.6 0.079 1.7E-06 67.9 12.7 181 181-386 178-381 (733)
252 cd00983 recA RecA is a bacter 95.6 0.031 6.8E-07 62.2 7.8 84 208-298 53-142 (325)
253 TIGR02012 tigrfam_recA protein 95.6 0.034 7.4E-07 61.9 8.0 84 208-298 53-142 (321)
254 PF00560 LRR_1: Leucine Rich R 95.6 0.0061 1.3E-07 37.4 1.2 18 590-607 2-19 (22)
255 PRK11034 clpA ATP-dependent Cl 95.6 0.041 9E-07 69.1 9.5 122 181-314 458-582 (758)
256 PF05659 RPW8: Arabidopsis bro 95.5 0.2 4.2E-06 48.8 11.9 84 4-87 2-86 (147)
257 KOG1969 DNA replication checkp 95.5 0.045 9.8E-07 65.0 8.9 75 208-302 324-400 (877)
258 KOG1644 U2-associated snRNP A' 95.5 0.013 2.9E-07 58.2 3.9 98 565-664 42-145 (233)
259 cd03214 ABC_Iron-Siderophores_ 95.5 0.1 2.2E-06 53.8 10.9 119 210-332 25-161 (180)
260 COG1223 Predicted ATPase (AAA+ 95.5 0.12 2.7E-06 53.3 10.8 156 181-359 121-297 (368)
261 cd03238 ABC_UvrA The excision 95.5 0.082 1.8E-06 53.8 9.7 122 210-343 21-161 (176)
262 PRK09354 recA recombinase A; P 95.5 0.047 1E-06 61.3 8.4 85 208-299 58-148 (349)
263 PF08423 Rad51: Rad51; InterP 95.4 0.03 6.5E-07 61.0 6.8 56 210-266 38-97 (256)
264 PRK14722 flhF flagellar biosyn 95.4 0.042 9E-07 62.6 8.0 87 210-299 137-225 (374)
265 COG1484 DnaC DNA replication p 95.4 0.042 9.1E-07 59.7 7.7 80 211-307 106-185 (254)
266 PLN03187 meiotic recombination 95.4 0.076 1.7E-06 60.0 9.9 59 208-267 124-186 (344)
267 cd03247 ABCC_cytochrome_bd The 95.4 0.089 1.9E-06 54.2 9.8 23 211-233 29-51 (178)
268 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.4 0.099 2.1E-06 51.5 9.7 104 211-333 27-131 (144)
269 PF14532 Sigma54_activ_2: Sigm 95.4 0.014 2.9E-07 57.3 3.5 108 184-329 1-110 (138)
270 KOG0730 AAA+-type ATPase [Post 95.3 0.32 7E-06 57.7 14.8 53 181-233 434-491 (693)
271 PRK11889 flhF flagellar biosyn 95.3 0.075 1.6E-06 59.9 9.4 87 209-298 240-329 (436)
272 PRK08699 DNA polymerase III su 95.3 0.16 3.4E-06 57.5 12.2 71 288-358 112-184 (325)
273 KOG2123 Uncharacterized conser 95.2 0.002 4.4E-08 66.6 -2.7 101 564-667 18-125 (388)
274 PRK13695 putative NTPase; Prov 95.2 0.021 4.6E-07 58.6 4.6 22 212-233 2-23 (174)
275 PF13604 AAA_30: AAA domain; P 95.2 0.019 4.2E-07 59.9 4.3 105 211-330 19-132 (196)
276 PRK15455 PrkA family serine pr 95.2 0.014 3E-07 68.5 3.5 50 182-233 77-126 (644)
277 KOG0734 AAA+-type ATPase conta 95.2 0.092 2E-06 59.9 9.6 100 181-300 304-407 (752)
278 cd03228 ABCC_MRP_Like The MRP 95.2 0.095 2.1E-06 53.6 9.3 124 211-343 29-167 (171)
279 KOG1051 Chaperone HSP104 and r 95.2 0.11 2.4E-06 64.9 11.2 138 181-329 562-710 (898)
280 KOG0744 AAA+-type ATPase [Post 95.2 0.05 1.1E-06 58.0 7.0 79 210-298 177-259 (423)
281 PHA02244 ATPase-like protein 95.2 0.067 1.5E-06 59.9 8.4 22 212-233 121-142 (383)
282 PRK09270 nucleoside triphospha 95.1 0.095 2.1E-06 56.5 9.4 26 208-233 31-56 (229)
283 cd03223 ABCD_peroxisomal_ALDP 95.1 0.16 3.5E-06 51.5 10.6 116 211-333 28-152 (166)
284 KOG0473 Leucine-rich repeat pr 95.1 0.0021 4.6E-08 64.6 -3.0 87 559-646 36-122 (326)
285 TIGR02239 recomb_RAD51 DNA rep 95.1 0.071 1.5E-06 60.0 8.6 58 208-266 94-155 (316)
286 PF00560 LRR_1: Leucine Rich R 95.1 0.012 2.7E-07 36.1 1.4 22 566-587 1-22 (22)
287 COG0572 Udk Uridine kinase [Nu 95.0 0.042 9.1E-07 56.6 5.9 78 208-290 6-85 (218)
288 PF07724 AAA_2: AAA domain (Cd 95.0 0.018 4E-07 58.2 3.2 41 210-251 3-43 (171)
289 PLN00020 ribulose bisphosphate 95.0 0.034 7.3E-07 61.7 5.4 26 208-233 146-171 (413)
290 TIGR01650 PD_CobS cobaltochela 95.0 0.27 5.8E-06 54.6 12.4 60 183-257 47-106 (327)
291 PRK00771 signal recognition pa 95.0 0.11 2.4E-06 60.8 10.0 87 208-298 93-184 (437)
292 cd01131 PilT Pilus retraction 95.0 0.03 6.5E-07 58.7 4.9 112 211-333 2-113 (198)
293 KOG0731 AAA+-type ATPase conta 95.0 0.4 8.6E-06 58.8 14.7 184 181-388 311-520 (774)
294 COG1618 Predicted nucleotide k 95.0 0.021 4.6E-07 54.6 3.2 25 210-234 5-29 (179)
295 PRK05703 flhF flagellar biosyn 94.9 0.18 3.9E-06 59.3 11.5 86 210-298 221-308 (424)
296 cd03222 ABC_RNaseL_inhibitor T 94.9 0.14 3.1E-06 52.1 9.3 23 211-233 26-48 (177)
297 PRK06067 flagellar accessory p 94.9 0.1 2.2E-06 56.6 8.9 87 208-299 23-130 (234)
298 PRK05439 pantothenate kinase; 94.9 0.12 2.7E-06 57.2 9.4 79 208-290 84-166 (311)
299 KOG1644 U2-associated snRNP A' 94.8 0.033 7.3E-07 55.4 4.4 82 714-807 43-126 (233)
300 COG1121 ZnuC ABC-type Mn/Zn tr 94.8 0.12 2.6E-06 54.9 8.8 121 211-333 31-203 (254)
301 COG1419 FlhF Flagellar GTP-bin 94.8 0.079 1.7E-06 59.7 7.9 87 209-298 202-290 (407)
302 KOG0733 Nuclear AAA ATPase (VC 94.8 0.51 1.1E-05 55.3 14.2 155 210-386 545-718 (802)
303 PRK12724 flagellar biosynthesi 94.8 0.062 1.3E-06 61.5 7.1 24 210-233 223-246 (432)
304 PLN03186 DNA repair protein RA 94.8 0.13 2.9E-06 58.1 9.8 59 208-267 121-183 (342)
305 PRK12727 flagellar biosynthesi 94.8 0.11 2.5E-06 61.0 9.3 87 209-298 349-437 (559)
306 COG4608 AppF ABC-type oligopep 94.8 0.13 2.8E-06 54.7 8.9 126 209-337 38-178 (268)
307 PRK04301 radA DNA repair and r 94.8 0.14 3.1E-06 58.2 10.2 58 208-266 100-161 (317)
308 cd01120 RecA-like_NTPases RecA 94.8 0.1 2.2E-06 53.0 8.3 40 212-253 1-40 (165)
309 cd03216 ABC_Carb_Monos_I This 94.8 0.11 2.4E-06 52.6 8.2 116 211-333 27-146 (163)
310 COG2884 FtsE Predicted ATPase 94.7 0.17 3.7E-06 50.1 8.8 60 277-336 143-204 (223)
311 TIGR02858 spore_III_AA stage I 94.7 0.34 7.5E-06 53.0 12.4 129 189-334 97-234 (270)
312 KOG2739 Leucine-rich acidic nu 94.7 0.014 3.1E-07 60.7 1.5 40 562-601 62-104 (260)
313 TIGR00554 panK_bact pantothena 94.7 0.12 2.6E-06 56.9 8.8 25 208-232 60-84 (290)
314 PRK07667 uridine kinase; Provi 94.7 0.041 8.9E-07 57.4 5.0 38 190-233 3-40 (193)
315 KOG0728 26S proteasome regulat 94.6 0.55 1.2E-05 48.2 12.3 158 182-359 147-331 (404)
316 cd02025 PanK Pantothenate kina 94.6 0.1 2.2E-06 55.6 7.8 22 212-233 1-22 (220)
317 PF00006 ATP-synt_ab: ATP synt 94.6 0.096 2.1E-06 54.9 7.3 82 211-298 16-114 (215)
318 PRK12723 flagellar biosynthesi 94.6 0.12 2.6E-06 59.6 8.7 90 209-300 173-265 (388)
319 PF12775 AAA_7: P-loop contain 94.5 0.044 9.6E-07 60.2 5.0 91 191-302 23-113 (272)
320 COG1102 Cmk Cytidylate kinase 94.5 0.061 1.3E-06 51.6 5.1 44 212-268 2-45 (179)
321 TIGR00959 ffh signal recogniti 94.5 0.17 3.6E-06 59.2 9.8 89 208-298 97-191 (428)
322 PTZ00301 uridine kinase; Provi 94.5 0.04 8.7E-07 57.8 4.3 24 210-233 3-26 (210)
323 TIGR02236 recomb_radA DNA repa 94.5 0.18 3.9E-06 57.3 10.0 58 208-266 93-154 (310)
324 COG1136 SalX ABC-type antimicr 94.4 0.25 5.4E-06 51.7 9.9 65 278-344 149-216 (226)
325 PRK05480 uridine/cytidine kina 94.4 0.034 7.4E-07 59.1 3.7 26 208-233 4-29 (209)
326 TIGR00708 cobA cob(I)alamin ad 94.4 0.15 3.2E-06 51.0 7.8 115 211-329 6-140 (173)
327 TIGR01817 nifA Nif-specific re 94.4 0.19 4.1E-06 62.0 10.7 48 180-233 195-242 (534)
328 KOG2035 Replication factor C, 94.4 0.1 2.2E-06 54.7 6.7 185 183-392 15-229 (351)
329 COG0464 SpoVK ATPases of the A 94.3 0.27 5.8E-06 60.2 11.8 132 208-359 274-423 (494)
330 KOG1532 GTPase XAB1, interacts 94.3 0.14 3.1E-06 53.3 7.5 61 208-270 17-88 (366)
331 PRK10867 signal recognition pa 94.3 0.14 3.1E-06 59.8 8.7 26 208-233 98-123 (433)
332 cd03115 SRP The signal recogni 94.3 0.1 2.3E-06 53.5 6.9 22 212-233 2-23 (173)
333 PF00485 PRK: Phosphoribulokin 94.3 0.031 6.7E-07 58.5 3.0 80 212-293 1-87 (194)
334 PRK11608 pspF phage shock prot 94.3 0.13 2.8E-06 58.6 8.2 46 182-233 7-52 (326)
335 cd03230 ABC_DR_subfamily_A Thi 94.3 0.21 4.6E-06 51.1 9.1 118 211-334 27-160 (173)
336 KOG0735 AAA+-type ATPase [Post 94.2 0.12 2.7E-06 61.1 7.8 72 210-299 431-504 (952)
337 KOG2123 Uncharacterized conser 94.2 0.0087 1.9E-07 62.1 -1.2 80 561-641 37-123 (388)
338 cd03246 ABCC_Protease_Secretio 94.2 0.18 3.8E-06 51.7 8.3 23 211-233 29-51 (173)
339 cd02019 NK Nucleoside/nucleoti 94.2 0.034 7.5E-07 46.5 2.5 22 212-233 1-22 (69)
340 PRK15429 formate hydrogenlyase 94.2 0.16 3.4E-06 64.8 9.6 135 181-329 376-521 (686)
341 PTZ00035 Rad51 protein; Provis 94.1 0.32 7E-06 55.3 10.9 59 208-267 116-178 (337)
342 TIGR03877 thermo_KaiC_1 KaiC d 94.1 0.25 5.4E-06 53.6 9.7 49 208-260 19-67 (237)
343 PF13238 AAA_18: AAA domain; P 94.1 0.034 7.4E-07 53.8 2.7 21 213-233 1-21 (129)
344 COG0468 RecA RecA/RadA recombi 94.1 0.2 4.3E-06 54.5 8.6 88 208-298 58-150 (279)
345 PRK12726 flagellar biosynthesi 94.1 0.18 3.8E-06 56.9 8.3 89 208-299 204-295 (407)
346 TIGR00235 udk uridine kinase. 94.1 0.043 9.3E-07 58.2 3.6 26 208-233 4-29 (207)
347 PRK06547 hypothetical protein; 94.0 0.07 1.5E-06 54.1 4.8 26 208-233 13-38 (172)
348 PRK08233 hypothetical protein; 94.0 0.042 9.2E-07 57.0 3.4 24 210-233 3-26 (182)
349 PRK14723 flhF flagellar biosyn 94.0 0.3 6.4E-06 60.7 10.9 86 210-298 185-272 (767)
350 PRK07132 DNA polymerase III su 93.9 2.5 5.5E-05 47.1 17.1 156 210-391 18-184 (299)
351 COG2842 Uncharacterized ATPase 93.9 1.3 2.9E-05 47.7 14.0 101 211-319 95-195 (297)
352 PF07726 AAA_3: ATPase family 93.9 0.046 1E-06 50.9 2.9 27 213-241 2-28 (131)
353 COG0396 sufC Cysteine desulfur 93.9 0.36 7.8E-06 49.7 9.3 61 281-341 154-216 (251)
354 KOG2739 Leucine-rich acidic nu 93.8 0.039 8.4E-07 57.6 2.5 104 564-671 42-155 (260)
355 TIGR00064 ftsY signal recognit 93.8 0.25 5.4E-06 54.4 9.0 88 208-298 70-163 (272)
356 PRK10733 hflB ATP-dependent me 93.8 0.29 6.3E-06 61.3 10.7 158 182-359 153-335 (644)
357 TIGR02974 phageshock_pspF psp 93.8 0.19 4.1E-06 57.2 8.3 45 183-233 1-45 (329)
358 PTZ00088 adenylate kinase 1; P 93.7 0.061 1.3E-06 57.3 4.0 21 213-233 9-29 (229)
359 PRK14721 flhF flagellar biosyn 93.7 0.26 5.6E-06 57.2 9.3 88 209-298 190-278 (420)
360 cd01121 Sms Sms (bacterial rad 93.7 0.27 5.8E-06 56.6 9.4 82 209-298 81-167 (372)
361 cd01122 GP4d_helicase GP4d_hel 93.7 0.4 8.8E-06 53.4 10.8 53 210-265 30-82 (271)
362 cd03282 ABC_MSH4_euk MutS4 hom 93.7 0.074 1.6E-06 55.7 4.4 118 210-336 29-158 (204)
363 TIGR01069 mutS2 MutS2 family p 93.6 0.053 1.1E-06 68.7 3.9 184 210-410 322-518 (771)
364 cd02027 APSK Adenosine 5'-phos 93.6 0.26 5.6E-06 48.9 8.0 22 212-233 1-22 (149)
365 TIGR00150 HI0065_YjeE ATPase, 93.6 0.1 2.2E-06 49.8 4.7 24 211-234 23-46 (133)
366 PF13671 AAA_33: AAA domain; P 93.6 0.054 1.2E-06 53.6 3.1 22 212-233 1-22 (143)
367 cd03229 ABC_Class3 This class 93.5 0.22 4.7E-06 51.4 7.6 23 211-233 27-49 (178)
368 PRK06995 flhF flagellar biosyn 93.5 0.37 8E-06 57.0 10.2 86 210-298 256-343 (484)
369 cd01125 repA Hexameric Replica 93.5 0.44 9.6E-06 51.8 10.4 22 212-233 3-24 (239)
370 PHA00729 NTP-binding motif con 93.5 0.095 2.1E-06 54.8 4.7 25 209-233 16-40 (226)
371 TIGR00390 hslU ATP-dependent p 93.5 0.19 4.2E-06 57.3 7.5 53 181-233 12-70 (441)
372 cd03281 ABC_MSH5_euk MutS5 hom 93.5 0.096 2.1E-06 55.5 4.9 119 210-335 29-160 (213)
373 cd03217 ABC_FeS_Assembly ABC-t 93.4 0.28 6.1E-06 51.6 8.4 24 210-233 26-49 (200)
374 PRK06002 fliI flagellum-specif 93.3 0.32 6.9E-06 56.6 9.1 87 209-298 164-263 (450)
375 PRK06762 hypothetical protein; 93.3 0.068 1.5E-06 54.4 3.4 23 211-233 3-25 (166)
376 KOG0924 mRNA splicing factor A 93.3 0.53 1.2E-05 55.4 10.6 115 211-330 372-511 (1042)
377 COG1428 Deoxynucleoside kinase 93.3 0.057 1.2E-06 54.7 2.6 25 210-234 4-28 (216)
378 PF10236 DAP3: Mitochondrial r 93.3 2.2 4.8E-05 48.1 15.6 49 340-389 258-306 (309)
379 cd01134 V_A-ATPase_A V/A-type 93.3 0.46 9.9E-06 52.9 9.7 48 210-261 157-205 (369)
380 PRK05022 anaerobic nitric oxid 93.2 0.25 5.4E-06 60.3 8.7 135 180-329 186-332 (509)
381 PRK08972 fliI flagellum-specif 93.2 0.31 6.7E-06 56.4 8.8 85 210-298 162-261 (444)
382 COG0563 Adk Adenylate kinase a 93.2 0.14 3E-06 52.2 5.3 22 212-233 2-23 (178)
383 PRK14974 cell division protein 93.2 0.45 9.8E-06 53.7 9.9 89 208-300 138-233 (336)
384 PF00910 RNA_helicase: RNA hel 93.2 0.05 1.1E-06 50.4 1.9 21 213-233 1-21 (107)
385 PTZ00185 ATPase alpha subunit; 93.1 0.46 9.9E-06 55.5 9.7 89 210-298 189-298 (574)
386 PRK12678 transcription termina 93.1 0.099 2.2E-06 61.4 4.5 89 209-298 415-512 (672)
387 cd03283 ABC_MutS-like MutS-lik 93.1 0.32 6.9E-06 50.9 8.0 23 211-233 26-48 (199)
388 PF03308 ArgK: ArgK protein; 93.0 0.14 2.9E-06 54.1 5.0 65 189-259 14-78 (266)
389 cd03369 ABCC_NFT1 Domain 2 of 93.0 0.99 2.1E-05 47.9 11.9 23 211-233 35-57 (207)
390 PRK03839 putative kinase; Prov 93.0 0.069 1.5E-06 55.2 3.0 22 212-233 2-23 (180)
391 PF08298 AAA_PrkA: PrkA AAA do 92.9 0.13 2.9E-06 57.0 5.1 53 179-233 59-111 (358)
392 TIGR01360 aden_kin_iso1 adenyl 92.9 0.081 1.8E-06 55.3 3.4 25 209-233 2-26 (188)
393 PF08433 KTI12: Chromatin asso 92.9 0.17 3.6E-06 55.5 5.8 23 211-233 2-24 (270)
394 PRK00625 shikimate kinase; Pro 92.9 0.072 1.6E-06 54.0 2.8 22 212-233 2-23 (173)
395 PRK10463 hydrogenase nickel in 92.9 0.43 9.2E-06 52.2 8.7 26 208-233 102-127 (290)
396 PRK04040 adenylate kinase; Pro 92.9 0.081 1.7E-06 54.7 3.1 23 211-233 3-25 (188)
397 cd00267 ABC_ATPase ABC (ATP-bi 92.8 0.22 4.9E-06 50.0 6.3 116 211-334 26-145 (157)
398 KOG0736 Peroxisome assembly fa 92.8 2.7 5.8E-05 51.1 15.6 100 181-300 672-775 (953)
399 PRK05986 cob(I)alamin adenolsy 92.8 0.29 6.3E-06 49.7 6.9 117 211-329 23-158 (191)
400 KOG0739 AAA+-type ATPase [Post 92.8 7 0.00015 41.8 16.8 98 182-300 134-236 (439)
401 PF01583 APS_kinase: Adenylyls 92.8 0.098 2.1E-06 51.3 3.4 23 211-233 3-25 (156)
402 PRK13543 cytochrome c biogenes 92.8 0.84 1.8E-05 48.6 10.9 23 211-233 38-60 (214)
403 PRK12597 F0F1 ATP synthase sub 92.7 0.28 6E-06 57.6 7.6 89 209-298 142-246 (461)
404 PRK08927 fliI flagellum-specif 92.7 0.42 9.1E-06 55.6 8.9 86 209-298 157-257 (442)
405 cd01135 V_A-ATPase_B V/A-type 92.7 0.44 9.5E-06 51.5 8.4 89 210-298 69-175 (276)
406 PRK04328 hypothetical protein; 92.6 0.39 8.4E-06 52.4 8.2 42 209-252 22-63 (249)
407 PF00154 RecA: recA bacterial 92.6 0.26 5.7E-06 54.8 6.8 85 208-299 51-141 (322)
408 cd03232 ABC_PDR_domain2 The pl 92.6 0.53 1.1E-05 49.2 8.9 22 211-232 34-55 (192)
409 PRK09280 F0F1 ATP synthase sub 92.6 0.43 9.3E-06 55.8 8.8 89 209-298 143-247 (463)
410 KOG0652 26S proteasome regulat 92.5 1.3 2.8E-05 45.9 11.0 58 181-240 171-233 (424)
411 cd02024 NRK1 Nicotinamide ribo 92.5 0.077 1.7E-06 54.3 2.4 22 212-233 1-22 (187)
412 COG0194 Gmk Guanylate kinase [ 92.5 0.14 3.1E-06 50.9 4.1 24 210-233 4-27 (191)
413 PF03193 DUF258: Protein of un 92.5 0.17 3.7E-06 49.9 4.7 35 188-233 24-58 (161)
414 PRK09519 recA DNA recombinatio 92.5 0.39 8.4E-06 59.9 8.7 84 208-298 58-147 (790)
415 cd03215 ABC_Carb_Monos_II This 92.4 0.61 1.3E-05 48.2 9.1 23 211-233 27-49 (182)
416 cd03213 ABCG_EPDR ABCG transpo 92.4 0.77 1.7E-05 48.0 9.9 24 210-233 35-58 (194)
417 PRK05201 hslU ATP-dependent pr 92.4 0.29 6.2E-06 56.0 6.9 53 181-233 15-73 (443)
418 cd02023 UMPK Uridine monophosp 92.4 0.081 1.7E-06 55.7 2.5 22 212-233 1-22 (198)
419 cd03244 ABCC_MRP_domain2 Domai 92.3 0.93 2E-05 48.7 10.7 23 211-233 31-53 (221)
420 PRK09544 znuC high-affinity zi 92.3 0.71 1.5E-05 50.5 9.8 24 210-233 30-53 (251)
421 PRK10751 molybdopterin-guanine 92.3 0.13 2.7E-06 51.7 3.5 26 208-233 4-29 (173)
422 COG1126 GlnQ ABC-type polar am 92.2 1.1 2.5E-05 45.7 10.0 25 209-233 27-51 (240)
423 COG1703 ArgK Putative periplas 92.2 0.18 4E-06 53.8 4.8 65 191-261 38-102 (323)
424 COG2019 AdkA Archaeal adenylat 92.2 0.12 2.6E-06 49.9 3.0 24 210-233 4-27 (189)
425 TIGR03878 thermo_KaiC_2 KaiC d 92.2 0.31 6.8E-06 53.5 6.8 41 208-250 34-74 (259)
426 PF06309 Torsin: Torsin; Inte 92.2 0.23 4.9E-06 46.3 4.7 51 182-233 26-76 (127)
427 CHL00206 ycf2 Ycf2; Provisiona 92.1 0.81 1.8E-05 61.5 11.2 24 210-233 1630-1653(2281)
428 PRK00889 adenylylsulfate kinas 92.1 0.13 2.7E-06 53.0 3.5 25 209-233 3-27 (175)
429 TIGR02322 phosphon_PhnN phosph 92.1 0.11 2.4E-06 53.7 3.1 23 211-233 2-24 (179)
430 cd01136 ATPase_flagellum-secre 92.1 0.76 1.6E-05 51.5 9.7 85 210-298 69-168 (326)
431 COG0714 MoxR-like ATPases [Gen 92.1 0.27 5.8E-06 56.4 6.5 66 181-261 24-89 (329)
432 TIGR03881 KaiC_arch_4 KaiC dom 92.1 0.75 1.6E-05 49.7 9.6 42 208-251 18-59 (229)
433 TIGR03498 FliI_clade3 flagella 92.0 0.46 9.9E-06 55.3 8.1 85 210-298 140-239 (418)
434 PRK00409 recombination and DNA 92.0 0.1 2.2E-06 66.4 3.2 176 209-410 326-523 (782)
435 PF03205 MobB: Molybdopterin g 92.0 0.12 2.6E-06 50.3 3.0 39 211-250 1-39 (140)
436 PF12061 DUF3542: Protein of u 92.0 0.42 9.1E-06 50.8 6.9 55 31-86 316-372 (402)
437 PRK08533 flagellar accessory p 92.0 0.56 1.2E-05 50.4 8.3 48 210-261 24-71 (230)
438 COG3640 CooC CO dehydrogenase 91.9 0.19 4E-06 51.8 4.3 42 212-254 2-43 (255)
439 PRK13948 shikimate kinase; Pro 91.9 0.37 7.9E-06 49.3 6.5 26 208-233 8-33 (182)
440 cd02028 UMPK_like Uridine mono 91.9 0.11 2.3E-06 53.5 2.6 22 212-233 1-22 (179)
441 TIGR01359 UMP_CMP_kin_fam UMP- 91.9 0.1 2.2E-06 54.2 2.5 22 212-233 1-22 (183)
442 PRK07594 type III secretion sy 91.8 0.57 1.2E-05 54.6 8.6 86 209-298 154-254 (433)
443 COG0003 ArsA Predicted ATPase 91.8 0.22 4.8E-06 55.6 5.2 49 210-260 2-50 (322)
444 PF13481 AAA_25: AAA domain; P 91.8 0.58 1.3E-05 49.0 8.2 41 211-251 33-81 (193)
445 cd03233 ABC_PDR_domain1 The pl 91.8 1.2 2.6E-05 46.9 10.5 23 211-233 34-56 (202)
446 TIGR01425 SRP54_euk signal rec 91.8 0.55 1.2E-05 54.6 8.4 25 209-233 99-123 (429)
447 cd03280 ABC_MutS2 MutS2 homolo 91.7 0.58 1.3E-05 49.2 8.1 21 211-231 29-49 (200)
448 PRK00131 aroK shikimate kinase 91.7 0.13 2.8E-06 53.0 3.1 23 211-233 5-27 (175)
449 COG1936 Predicted nucleotide k 91.7 0.13 2.8E-06 50.3 2.8 20 212-231 2-21 (180)
450 PRK15453 phosphoribulokinase; 91.7 0.75 1.6E-05 49.8 8.7 25 208-232 3-27 (290)
451 PRK08149 ATP synthase SpaL; Va 91.7 0.65 1.4E-05 54.0 8.9 86 209-298 150-250 (428)
452 TIGR03305 alt_F1F0_F1_bet alte 91.7 0.29 6.3E-06 57.0 6.0 89 209-298 137-241 (449)
453 TIGR03263 guanyl_kin guanylate 91.7 0.13 2.9E-06 53.2 3.1 23 211-233 2-24 (180)
454 cd00544 CobU Adenosylcobinamid 91.7 0.43 9.4E-06 48.1 6.6 78 213-298 2-82 (169)
455 cd01132 F1_ATPase_alpha F1 ATP 91.6 0.74 1.6E-05 49.8 8.7 83 210-298 69-170 (274)
456 TIGR03522 GldA_ABC_ATP gliding 91.6 1.3 2.9E-05 49.9 11.4 24 210-233 28-51 (301)
457 PRK11823 DNA repair protein Ra 91.6 0.73 1.6E-05 54.9 9.5 82 209-298 79-165 (446)
458 cd03254 ABCC_Glucan_exporter_l 91.6 1.3 2.9E-05 47.7 10.9 23 211-233 30-52 (229)
459 PRK06936 type III secretion sy 91.6 0.57 1.2E-05 54.5 8.2 86 209-298 161-261 (439)
460 cd02021 GntK Gluconate kinase 91.5 0.12 2.6E-06 51.5 2.5 22 212-233 1-22 (150)
461 PRK10820 DNA-binding transcrip 91.5 0.4 8.6E-06 58.6 7.4 47 181-233 204-250 (520)
462 TIGR03575 selen_PSTK_euk L-ser 91.5 0.41 8.8E-06 54.0 6.8 21 213-233 2-22 (340)
463 PRK06217 hypothetical protein; 91.5 0.13 2.8E-06 53.2 2.8 23 212-234 3-25 (183)
464 PRK05917 DNA polymerase III su 91.5 2 4.4E-05 47.2 11.9 131 189-346 5-154 (290)
465 PRK13949 shikimate kinase; Pro 91.5 0.13 2.9E-06 52.1 2.8 22 212-233 3-24 (169)
466 COG1124 DppF ABC-type dipeptid 91.4 0.15 3.3E-06 52.9 3.0 23 210-232 33-55 (252)
467 PF13504 LRR_7: Leucine rich r 91.4 0.11 2.3E-06 29.6 1.1 13 567-579 3-15 (17)
468 KOG0736 Peroxisome assembly fa 91.4 1.9 4.1E-05 52.3 12.2 52 182-233 402-454 (953)
469 cd02020 CMPK Cytidine monophos 91.4 0.12 2.7E-06 51.2 2.5 22 212-233 1-22 (147)
470 PRK10416 signal recognition pa 91.4 0.91 2E-05 51.2 9.5 26 209-234 113-138 (318)
471 PF00625 Guanylate_kin: Guanyl 91.4 0.17 3.7E-06 52.3 3.6 36 211-248 3-38 (183)
472 PF13245 AAA_19: Part of AAA d 91.4 0.29 6.3E-06 41.7 4.2 22 211-232 11-33 (76)
473 cd00227 CPT Chloramphenicol (C 91.4 0.14 3.1E-06 52.5 2.9 23 211-233 3-25 (175)
474 PRK05973 replicative DNA helic 91.3 0.74 1.6E-05 49.1 8.2 48 209-260 63-110 (237)
475 cd00820 PEPCK_HprK Phosphoenol 91.3 0.18 3.8E-06 45.9 3.1 22 210-231 15-36 (107)
476 PLN02348 phosphoribulokinase 91.3 0.21 4.6E-06 56.6 4.4 26 208-233 47-72 (395)
477 TIGR01420 pilT_fam pilus retra 91.2 0.33 7.1E-06 55.8 6.0 112 211-333 123-234 (343)
478 PRK03846 adenylylsulfate kinas 91.2 0.18 4E-06 52.9 3.6 26 208-233 22-47 (198)
479 cd03287 ABC_MSH3_euk MutS3 hom 91.2 1.4 2.9E-05 46.9 10.1 118 210-335 31-160 (222)
480 TIGR00416 sms DNA repair prote 91.2 1.1 2.3E-05 53.5 10.3 42 208-251 92-133 (454)
481 COG0467 RAD55 RecA-superfamily 91.2 0.28 6E-06 54.2 5.1 43 208-252 21-63 (260)
482 PRK13947 shikimate kinase; Pro 91.2 0.15 3.2E-06 52.3 2.7 22 212-233 3-24 (171)
483 PF08477 Miro: Miro-like prote 91.2 0.17 3.7E-06 48.0 3.0 22 213-234 2-23 (119)
484 PF13504 LRR_7: Leucine rich r 91.2 0.12 2.7E-06 29.3 1.2 17 588-604 1-17 (17)
485 PF03969 AFG1_ATPase: AFG1-lik 91.1 0.44 9.5E-06 54.6 6.8 102 208-327 60-166 (362)
486 PRK09099 type III secretion sy 91.1 0.7 1.5E-05 54.0 8.4 86 209-298 162-262 (441)
487 PRK05688 fliI flagellum-specif 91.1 0.82 1.8E-05 53.4 8.9 85 210-298 168-267 (451)
488 smart00534 MUTSac ATPase domai 91.1 0.68 1.5E-05 47.9 7.6 21 212-232 1-21 (185)
489 PRK10923 glnG nitrogen regulat 91.1 0.9 1.9E-05 55.4 9.9 47 181-233 138-184 (469)
490 PRK05922 type III secretion sy 91.0 0.7 1.5E-05 53.7 8.3 84 211-298 158-256 (434)
491 TIGR03496 FliI_clade1 flagella 91.0 0.78 1.7E-05 53.4 8.7 85 210-298 137-236 (411)
492 COG0465 HflB ATP-dependent Zn 91.0 1.2 2.7E-05 53.6 10.4 185 178-387 147-356 (596)
493 cd00071 GMPK Guanosine monopho 91.0 0.16 3.4E-06 49.5 2.6 21 213-233 2-22 (137)
494 PRK00300 gmk guanylate kinase; 90.9 0.18 3.9E-06 53.5 3.2 24 210-233 5-28 (205)
495 KOG0729 26S proteasome regulat 90.9 0.78 1.7E-05 47.6 7.4 53 181-233 177-234 (435)
496 PF06745 KaiC: KaiC; InterPro 90.9 0.24 5.2E-06 53.4 4.3 87 208-298 17-124 (226)
497 PRK10078 ribose 1,5-bisphospho 90.9 0.18 3.9E-06 52.3 3.1 23 211-233 3-25 (186)
498 KOG0727 26S proteasome regulat 90.8 0.49 1.1E-05 48.6 5.9 53 181-233 155-212 (408)
499 PRK12339 2-phosphoglycerate ki 90.8 0.19 4.2E-06 52.1 3.3 24 210-233 3-26 (197)
500 cd02029 PRK_like Phosphoribulo 90.8 0.42 9E-06 51.2 5.6 76 212-289 1-84 (277)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-75 Score=720.14 Aligned_cols=790 Identities=28% Similarity=0.394 Sum_probs=562.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHhhhcccccc
Q 045318 26 LQFARQEQIQADLKKWERILFKIHAVLDDADEKQMTKQSVRLWLRELKNLAYDVEDILDEFSTEALRRQLLEEKQHHETN 105 (1388)
Q Consensus 26 ~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~~~ 105 (1388)
.++....++++.+..|++.|..++++++|+++++.....+..|.+.+++++|++||.++.+.......+..+.-. .
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~----~ 93 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLS----T 93 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh----h
Confidence 345556788889999999999999999999999888899999999999999999999999998876654322110 0
Q ss_pred cccccccccccccCCCCCchhhchhHHHHHHHHHHHHHHHHHhhhccCccCCCCCCCcccccccccccccccccCCcccc
Q 045318 106 TSMLRKLIPTCCTNRGPRSLAFNSSMRSKIDEISSRLQDIVTEKEQLDLKENPSSRGRFKKVIQERLPATSLVNEAEVHG 185 (1388)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG 185 (1388)
....++.. | ..++++..+..+..+.+++..+.+.+..++........+.. ....+..++.+..++.. ||
T Consensus 94 ~~~~~~~~---c------~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~-VG 162 (889)
T KOG4658|consen 94 RSVERQRL---C------LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES-LDPREKVETRPIQSESD-VG 162 (889)
T ss_pred hHHHHHHH---h------hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc-ccchhhcccCCCCcccc-cc
Confidence 00011111 1 01345677777777778887777777777655432211110 11112223444444445 99
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc-ccccCCceEEEEeCCccCHHHHHHHHHHH
Q 045318 186 RDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM-VESHFDLKAWTCVSDDFDAIKVTKAILRS 264 (1388)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (1388)
.++.++++.+.|..++ ..+|+|+||||+||||||+.++|+.. ++.+||.++||+||++++..+++++|++.
T Consensus 163 ~e~~~~kl~~~L~~d~--------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 163 LETMLEKLWNRLMEDD--------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILER 234 (889)
T ss_pred HHHHHHHHHHHhccCC--------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHH
Confidence 9999999999998753 28999999999999999999999987 99999999999999999999999999999
Q ss_pred hcCCCCC--CCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhh-cCCCceE
Q 045318 265 ICMHTDA--DDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASM-MGSVSAY 341 (1388)
Q Consensus 265 l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-~~~~~~~ 341 (1388)
++..... ....++++..+.+.|++|||+|||||||+. .+|+.+..++|....||||++|||++.|+.. +++...+
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~ 312 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPI 312 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccc
Confidence 9875443 233478899999999999999999999998 4799999999999899999999999999998 8888899
Q ss_pred eCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHHHHHHHhhhccCCCCC--
Q 045318 342 ELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFDWRNVLNNKIWNLPEE-- 419 (1388)
Q Consensus 342 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~~-- 419 (1388)
+++.|+++|||.||++.||.... ...+.++++|++++++|+|+|||++++|+.|+.|.+..+|+++.+...+.+...
T Consensus 313 ~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~ 391 (889)
T KOG4658|consen 313 EVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFS 391 (889)
T ss_pred cccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCC
Confidence 99999999999999999976533 333448999999999999999999999999999999999999998765542222
Q ss_pred --CCchhHhh----------------------------HHHHHHHHHHcCCcCCCCCcchHHHHHHHHHHHHHhCCCCcc
Q 045318 420 --GGDIMRAL----------------------------KNDVVLVWMAEGLLEPDTSEMKMEELGRSYFRELHSRSFFQK 469 (1388)
Q Consensus 420 --~~~~~~~l----------------------------~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~ 469 (1388)
...+++.+ ++++|.+||||||+.+..++.++++.|+.|+.+|+.++|++.
T Consensus 392 ~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~ 471 (889)
T KOG4658|consen 392 GMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIE 471 (889)
T ss_pred chhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhh
Confidence 22343433 789999999999999877788999999999999999999998
Q ss_pred cc---CCCcccccchHHHHHHHhcc-----CceEEeecc--cccccccccCCcceEEEeeccccccccccccccCCCCCc
Q 045318 470 SY---MDSRFIMHDLITDLAQWAAS-----DSYFRLENT--LEGNKQQKFSKNLRHFSYPIGHFDHIRRFEAISDCKHLR 539 (1388)
Q Consensus 470 ~~---~~~~~~mHdli~d~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr 539 (1388)
.. ....|+|||+|||+|.|+++ .+...+..+ .........+..+|++++..+....+ ..-..+++|+
T Consensus 472 ~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~---~~~~~~~~L~ 548 (889)
T KOG4658|consen 472 ERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHI---AGSSENPKLR 548 (889)
T ss_pred cccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhc---cCCCCCCccc
Confidence 74 44789999999999999999 455444432 11112233356789999988765443 3345667899
Q ss_pred eeeeecccccccccchHHHHhhccCceeeEEEeCCc-cccccccccccCcccceeeccCccccccccchhcccccceeec
Q 045318 540 TFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREY-NICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLL 618 (1388)
Q Consensus 540 ~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~-~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L 618 (1388)
+|.+..... ++.......|..++.||||||++| .+..+|++|++|.|||||+|+++.|..+|..+++|+.|.+||+
T Consensus 549 tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 549 TLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred eEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecc
Confidence 997554311 123333444688999999999987 7889999999999999999999999999999999999999999
Q ss_pred CCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCC
Q 045318 619 ESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENV 698 (1388)
Q Consensus 619 ~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~ 698 (1388)
..+.....+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.....+...+..+..+..|+.......+..
T Consensus 626 ~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~- 703 (889)
T KOG4658|consen 626 EVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG- 703 (889)
T ss_pred ccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc-
Confidence 9988777777777779999999987754 22222345556666666655554333222233333333331111111111
Q ss_pred CCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEee
Q 045318 699 KDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRF 778 (1388)
Q Consensus 699 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L 778 (1388)
.........+..+.+|+.|.+..+...............+. .++++..+.+.++.+...+.|.. ..++|+.|.+
T Consensus 704 -~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~---~f~~l~~~~~~~~~~~r~l~~~~--f~~~L~~l~l 777 (889)
T KOG4658|consen 704 -CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL---CFPNLSKVSILNCHMLRDLTWLL--FAPHLTSLSL 777 (889)
T ss_pred -cccceeecccccccCcceEEEEcCCCchhhcccccccchhh---hHHHHHHHHhhccccccccchhh--ccCcccEEEE
Confidence 11222344566778888888887766432111100000000 13344555555555555566653 2577888888
Q ss_pred ecCCCCCCC-CCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCccee-eccccccccccccCCCCCccccccccc
Q 045318 779 ENCAMCTSL-PSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETL-FFGDMPEWEDWIPHQPSQEVEVFPQLQ 856 (1388)
Q Consensus 779 ~~~~~~~~l-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~~L~ 856 (1388)
..|...+.+ |....+..++.+.+ .|.+++.+ .+.+.+.+..+.. ..-.++.|+
T Consensus 778 ~~~~~~e~~i~~~k~~~~l~~~i~--------------------~f~~~~~l~~~~~l~~l~~i~~-----~~l~~~~l~ 832 (889)
T KOG4658|consen 778 VSCRLLEDIIPKLKALLELKELIL--------------------PFNKLEGLRMLCSLGGLPQLYW-----LPLSFLKLE 832 (889)
T ss_pred ecccccccCCCHHHHhhhcccEEe--------------------cccccccceeeecCCCCceeEe-----cccCccchh
Confidence 877765543 33333333433221 24444444 3444444333321 111245577
Q ss_pred EEeecCCccccccCCCCCCCccEEEEecc
Q 045318 857 ELSLVRCSKLLGRLPEHLPSLKTLVIQEC 885 (1388)
Q Consensus 857 ~L~l~~C~~L~~~~p~~l~~L~~L~i~~~ 885 (1388)
.+.+..||++. . +|.+.++.+.+|
T Consensus 833 ~~~ve~~p~l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 833 ELIVEECPKLG-K----LPLLSTLTIVGC 856 (889)
T ss_pred heehhcCcccc-c----Cccccccceecc
Confidence 77777777775 3 445556666665
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-57 Score=599.80 Aligned_cols=459 Identities=20% Similarity=0.275 Sum_probs=317.5
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEe---CCc----
Q 045318 179 NEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCV---SDD---- 251 (1388)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~---s~~---- 251 (1388)
+...+|||++.++++..++.... +++++|+||||||+||||||+++|+. +..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~------~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~~~~v~~~~~~~ 253 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES------EEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFIDRAFISKSMEIY 253 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc------CceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEeeccccccchhhc
Confidence 34569999999999999885432 56899999999999999999999986 7788988887642 111
Q ss_pred -------cC-HHHHHHHHHHHhcCCCCC-CCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEE
Q 045318 252 -------FD-AIKVTKAILRSICMHTDA-DDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKI 322 (1388)
Q Consensus 252 -------~~-~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~i 322 (1388)
+. ...++++++.++...... .... ..+++.+++||+||||||||+. ..|+.+.....+.++||+|
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrI 327 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRI 327 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEE
Confidence 11 123455555555332211 1111 3567788999999999999875 5788887766666789999
Q ss_pred EEEcCChhHHhhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCH
Q 045318 323 IVTTRNQSVASMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNP 402 (1388)
Q Consensus 323 ivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~ 402 (1388)
|||||++.++..++...+|+++.|++++||+||+++||+.. .++.++.+++++|+++|+|+|||++++|+.|+++ +.
T Consensus 328 IiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~ 404 (1153)
T PLN03210 328 IVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DK 404 (1153)
T ss_pred EEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CH
Confidence 99999999998877778999999999999999999999754 3456789999999999999999999999999987 67
Q ss_pred HHHHHHHhhhccCCCCCCCchhHhh----------HHHHHHHHHHcCCcCCCCCcchHHHHH------HHHHHHHHhCCC
Q 045318 403 FDWRNVLNNKIWNLPEEGGDIMRAL----------KNDVVLVWMAEGLLEPDTSEMKMEELG------RSYFRELHSRSF 466 (1388)
Q Consensus 403 ~~w~~~~~~~~~~~~~~~~~~~~~l----------~~~li~~wia~g~i~~~~~~~~~~~~~------~~~~~~L~~~~l 466 (1388)
.+|++++++..+.+.. .+.+.+ .++.+.+|+|+.|.....+ ....-.+ +..++.|++++|
T Consensus 405 ~~W~~~l~~L~~~~~~---~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~-~v~~~l~~~~~~~~~~l~~L~~ksL 480 (1153)
T PLN03210 405 EDWMDMLPRLRNGLDG---KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN-DIKLLLANSDLDVNIGLKNLVDKSL 480 (1153)
T ss_pred HHHHHHHHHHHhCccH---HHHHHHHHhhhccCccchhhhhheehhhcCCCCHH-HHHHHHHhcCCCchhChHHHHhcCC
Confidence 8999998875443321 233333 2456778888776542111 1111111 223789999999
Q ss_pred CccccCCCcccccchHHHHHHHhccCce-------EEeecc-c-ccccccccCCcceEEEeecccccccc-ccccccCCC
Q 045318 467 FQKSYMDSRFIMHDLITDLAQWAASDSY-------FRLENT-L-EGNKQQKFSKNLRHFSYPIGHFDHIR-RFEAISDCK 536 (1388)
Q Consensus 467 i~~~~~~~~~~mHdli~d~a~~~~~~~~-------~~~~~~-~-~~~~~~~~~~~~r~ls~~~~~~~~~~-~~~~~~~~~ 536 (1388)
++.. ..++.|||++|+||++++.++. +..... . .-.........++++++......... ...+|..++
T Consensus 481 i~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~ 558 (1153)
T PLN03210 481 IHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMR 558 (1153)
T ss_pred EEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCc
Confidence 9876 3579999999999999986542 111100 0 00011223356777777655433221 224577788
Q ss_pred CCceeeeeccccc-ccccchHHHHhhccC-ceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccc
Q 045318 537 HLRTFVSVQWTFS-RHFLSDSVVHMLLKL-QCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLH 614 (1388)
Q Consensus 537 ~Lr~L~~~~~~~~-~~~l~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 614 (1388)
+|+.|.++..... .+.+...+|..+..+ ..||+|++.++.+..+|..+ .+.+|++|+|++|.+..+|..+..+++|+
T Consensus 559 ~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk 637 (1153)
T PLN03210 559 NLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLR 637 (1153)
T ss_pred cccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCC
Confidence 8888865432111 111222344444333 35888888888888888766 46788888888888888888788888888
Q ss_pred eeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCC
Q 045318 615 TLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQ 662 (1388)
Q Consensus 615 ~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 662 (1388)
.|+|++|..+..+| .++.+++|++|++++|..+..+|..++++++|+
T Consensus 638 ~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 638 NIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred EEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 88888776666666 377777788887777765555554444444333
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-34 Score=382.79 Aligned_cols=323 Identities=17% Similarity=0.106 Sum_probs=159.1
Q ss_pred CCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccc
Q 045318 941 LPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTL 1020 (1388)
Q Consensus 941 l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~ 1020 (1388)
+++|+.|++++|.+....+ ..+..+++|+.|++++|.....++.. +..+++|+.|++++|...+.+|..+
T Consensus 283 l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~n~~~~~~~~~-------~~~l~~L~~L~L~~n~l~~~~p~~l 352 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIP---ELVIQLQNLEILHLFSNNFTGKIPVA-------LTSLPRLQVLQLWSNKFSGEIPKNL 352 (968)
T ss_pred ccCcCEEECcCCeeccCCC---hhHcCCCCCcEEECCCCccCCcCChh-------HhcCCCCCEEECcCCCCcCcCChHH
Confidence 4556666666665553321 23445555555555554433333222 2334555555555555555555555
Q ss_pred cCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecCcCcccchhhhhhccCCC
Q 045318 1021 LSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCHDLRTLIDEDQISGMKK 1100 (1388)
Q Consensus 1021 ~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~~L~~~~~~~~l~~~~~ 1100 (1388)
..+++|+.|++++|+....+|..+. .++ +|+.|++++|. +
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~--~~~-----------------------~L~~L~l~~n~---------------l 392 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLC--SSG-----------------------NLFKLILFSNS---------------L 392 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHh--CcC-----------------------CCCEEECcCCE---------------e
Confidence 5555555555555554444444331 123 33333333332 1
Q ss_pred CCCCCCCCCccccccceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCCCccccccEEeccCCCccccccC
Q 045318 1101 DGDIPSGSSSYTCLLERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGALPKVLKDLYIYECSELESIAEG 1180 (1388)
Q Consensus 1101 ~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~ 1180 (1388)
.+.+|..+..+.+ |+.|++++|.--..++......++|+.|++++|.....++.....++
T Consensus 393 ~~~~p~~~~~~~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------------------- 452 (968)
T PLN00113 393 EGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP------------------- 452 (968)
T ss_pred cccCCHHHhCCCC-CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC-------------------
Confidence 1133333333333 66666666533223322222223355555554433322322222334
Q ss_pred CCCCCCcceeccchhhhhhhccccceEeecCCCCccccCCcCCcCccceEEeccCCCCcccCCC-CCCCccceeeccccc
Q 045318 1181 LDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPNNLHQFSIEILLIQDCPSLGSFTAD-CFPTKVSALGIDYLT 1259 (1388)
Q Consensus 1181 ~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~~~ 1259 (1388)
+|+.|++++|.....+|..+..++|+.|++++|.....+|.. .-.++|+.|++++|.
T Consensus 453 ----------------------~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 510 (968)
T PLN00113 453 ----------------------SLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510 (968)
T ss_pred ----------------------CCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCc
Confidence 444555544444344443333345555555555333232221 112455666666666
Q ss_pred CCcchhcccccccCccceeEecCCCCCccccCcccccccCCCccceeecccCCCCCCcc-CCCCCCCcCcEeecCCCCCc
Q 045318 1260 IHKPFFELGLRRFTSLRELRLYGGSRDVVAFPPEDTKMALPASLTFLWIDNFPNLLRLS-SIENLTSLQFLRFRNCPKLE 1338 (1388)
Q Consensus 1260 l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~ 1338 (1388)
+.+..+. .+.++++|+.|+|++| .....+|... ..+++|+.|++++|...+.+| .+.++++|++|++++|+-..
T Consensus 511 l~~~~p~-~~~~l~~L~~L~Ls~N-~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 511 LSGEIPD-ELSSCKKLVSLDLSHN-QLSGQIPASF---SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ceeeCCh-HHcCccCCCEEECCCC-cccccCChhH---hCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 5444432 3556667777777663 2233344332 345677777777777666677 67777788888888776555
Q ss_pred cCCCCCCCCccceeeeccCcch
Q 045318 1339 YFPENGLPTSLLRLQIIACPLM 1360 (1388)
Q Consensus 1339 ~l~~~~l~~sL~~L~i~~c~~L 1360 (1388)
.+|..+...++....+.++|.+
T Consensus 586 ~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 586 SLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred eCCCcchhcccChhhhcCCccc
Confidence 6776554445555555555533
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.5e-34 Score=378.99 Aligned_cols=111 Identities=23% Similarity=0.334 Sum_probs=59.2
Q ss_pred ccchHHHHhhccCceeeEEEeCCcccc-ccccccc-cCcccceeeccCcccc-ccccchhcccccceeecCCCcchhhcc
Q 045318 552 FLSDSVVHMLLKLQCLRVLCLREYNIC-KISNTIG-DLKHLRHLDLSETLIE-TLPESVNTLYNLHTLLLESCSRLKKLC 628 (1388)
Q Consensus 552 ~l~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp 628 (1388)
.+.+..+..+..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.+. .+|. +.+++|++|+|++|.....+|
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p 157 (968)
T PLN00113 80 NISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIP 157 (968)
T ss_pred CccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCC
Confidence 333334444555555666666655554 4554333 5556666666555554 2332 345556666665554444555
Q ss_pred hhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 629 ADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 629 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
..++++++|++|++++|.+...+|..++++++|++|
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 555556666666665555444555555555555555
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.7e-34 Score=321.33 Aligned_cols=249 Identities=33% Similarity=0.573 Sum_probs=192.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHh
Q 045318 186 RDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSI 265 (1388)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (1388)
||.++++|.++|.... .+.++|+|+||||+||||||++++++.+++.+|+.++||.++...+..+++..|+.++
T Consensus 1 re~~~~~l~~~L~~~~------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 4679999999999999999999999878999999999999999999999999999999
Q ss_pred cCCCC---CCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhhcCC-CceE
Q 045318 266 CMHTD---ADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMMGS-VSAY 341 (1388)
Q Consensus 266 ~~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~-~~~~ 341 (1388)
+.... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 87743 4567788999999999999999999999876 5898888888777789999999999999887654 5789
Q ss_pred eCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHHHHHHHhhhccCCC----
Q 045318 342 ELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFDWRNVLNNKIWNLP---- 417 (1388)
Q Consensus 342 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~---- 417 (1388)
++++|++++|++||.+.++... ....+...+.+++|+++|+|+||||+++|++|+.+....+|+++++...+...
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSG
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999986544 22334456789999999999999999999999766567789888765433322
Q ss_pred -----------------CCCCchhHhh----------HHHHHHHHHHcCCcCC
Q 045318 418 -----------------EEGGDIMRAL----------KNDVVLVWMAEGLLEP 443 (1388)
Q Consensus 418 -----------------~~~~~~~~~l----------~~~li~~wia~g~i~~ 443 (1388)
.....++.++ ++.++++|+|+|||..
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 1111122222 7899999999999975
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=7.4e-24 Score=231.94 Aligned_cols=377 Identities=16% Similarity=0.175 Sum_probs=249.9
Q ss_pred eeeEEEeCCccccccc-cccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCC
Q 045318 566 CLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYN 644 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 644 (1388)
.-+.||+++|.+..+- ..|.++++|+.++|..|.++.+|.......+|+.|+|.+|.....-.+++..++.|+.||++.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4567888888888664 677888888888888888888888777778888888888755444456778888888888888
Q ss_pred CCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeC
Q 045318 645 VPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTN 724 (1388)
Q Consensus 645 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~ 724 (1388)
|. +..+|. ..+....++++|+|+.|.
T Consensus 159 N~-is~i~~-----------------------------------------------------~sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 159 NL-ISEIPK-----------------------------------------------------PSFPAKVNIKKLNLASNR 184 (873)
T ss_pred ch-hhcccC-----------------------------------------------------CCCCCCCCceEEeecccc
Confidence 76 332221 112334567777788777
Q ss_pred CCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCC-CCCCCCCCCcceeeccC
Q 045318 725 SSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTS-LPSIGQLPALKHLSIIG 803 (1388)
Q Consensus 725 ~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l~~l~~L~~L~L~~ 803 (1388)
+++... ..+..+.+|..|.++.|..+.+|...+. .+++|+.|+|..|.+... .-.|.+|++|+.|.+..
T Consensus 185 It~l~~---------~~F~~lnsL~tlkLsrNrittLp~r~Fk-~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 185 ITTLET---------GHFDSLNSLLTLKLSRNRITTLPQRSFK-RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred cccccc---------ccccccchheeeecccCcccccCHHHhh-hcchhhhhhccccceeeehhhhhcCchhhhhhhhhh
Confidence 765322 2234455777778888888888776653 478888888888766443 23677888888888888
Q ss_pred CcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEEEe
Q 045318 804 MALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQ 883 (1388)
Q Consensus 804 ~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~ 883 (1388)
|...+--+..|++ +.+++.|.+.... +... ..+....+..|+.|++++ |.+..+-+.
T Consensus 255 N~I~kL~DG~Fy~------l~kme~l~L~~N~-l~~v----n~g~lfgLt~L~~L~lS~-NaI~rih~d----------- 311 (873)
T KOG4194|consen 255 NDISKLDDGAFYG------LEKMEHLNLETNR-LQAV----NEGWLFGLTSLEQLDLSY-NAIQRIHID----------- 311 (873)
T ss_pred cCcccccCcceee------ecccceeecccch-hhhh----hcccccccchhhhhccch-hhhheeecc-----------
Confidence 8665555555655 4445555444321 0000 001122355555566655 444322222
Q ss_pred cccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCC--chhcchhhhccCCCcceEEEeeeeeeeecccC
Q 045318 884 ECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPN--QVFLTGLLNQELPILEELAICNTKVTYLWQTG 961 (1388)
Q Consensus 884 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~--~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~ 961 (1388)
.+.-.+.|+.|+++.+....+....+..++.|...++.. ...+.+..+..+.+|++|++++|.+....++.
T Consensus 312 -------~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa 384 (873)
T KOG4194|consen 312 -------SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA 384 (873)
T ss_pred -------hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc
Confidence 222345556666666655555555555555544444433 22355666778888999999999888877777
Q ss_pred CccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccceEEEcc------CC
Q 045318 962 SGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISE------CH 1035 (1388)
Q Consensus 962 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~------~~ 1035 (1388)
...|.++++|+.|.+.+ ++++.++... +.++.+|++|+|.+|.+...-|.+|..+ .|+.|.+.. |+
T Consensus 385 a~~f~gl~~LrkL~l~g-Nqlk~I~krA------fsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 385 AVAFNGLPSLRKLRLTG-NQLKSIPKRA------FSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred hhhhccchhhhheeecC-ceeeecchhh------hccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 77888899999999988 6778887766 7788889999999988888888888877 888887654 43
Q ss_pred CCccChhhhc
Q 045318 1036 SMKSLPEALM 1045 (1388)
Q Consensus 1036 ~l~~~p~~~~ 1045 (1388)
++.++.++.
T Consensus 457 -l~Wl~qWl~ 465 (873)
T KOG4194|consen 457 -LKWLAQWLY 465 (873)
T ss_pred -HHHHHHHHH
Confidence 445565554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=4.5e-26 Score=238.45 Aligned_cols=101 Identities=25% Similarity=0.374 Sum_probs=73.7
Q ss_pred ccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 562 LKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
+.-..|..|++++|.+..+-+.+.++..|.+|++.+|++.++|.+|+.+..++.|+.++| .+.++|+.++.+.+|++|+
T Consensus 42 W~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhh
Confidence 344556777777777777777777777888888888888888888888888888888775 5667777788888888887
Q ss_pred cCCCCCcccCcCCCCCCCCCCCC
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
.+.|. ...+|.+++.+..|..|
T Consensus 121 ~s~n~-~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 121 CSSNE-LKELPDSIGRLLDLEDL 142 (565)
T ss_pred ccccc-eeecCchHHHHhhhhhh
Confidence 77776 55566666665555544
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=2e-24 Score=250.19 Aligned_cols=263 Identities=25% Similarity=0.293 Sum_probs=135.1
Q ss_pred CCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccc-cCCCCccE
Q 045318 999 PCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARV-QLPPSLKL 1077 (1388)
Q Consensus 999 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~sL~~ 1077 (1388)
+.+|++++++++ ....+|.++..+.+|+.++..+|.. ..+|..+.. .++|++|.+..|. ++.+|.. ....+|+.
T Consensus 240 p~nl~~~dis~n-~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~--~~~L~~l~~~~ne-l~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 240 PLNLQYLDISHN-NLSNLPEWIGACANLEALNANHNRL-VALPLRISR--ITSLVSLSAAYNE-LEYIPPFLEGLKSLRT 314 (1081)
T ss_pred cccceeeecchh-hhhcchHHHHhcccceEecccchhH-HhhHHHHhh--hhhHHHHHhhhhh-hhhCCCcccccceeee
Confidence 445666666666 3444556666667777777666653 556655533 5556666655443 4444433 22455666
Q ss_pred EEeecCcCcccchhhhhhccCCCCCCCCCCCCcccc-ccceeecCCCCCcccccCC-CCCCcccCceeEecCCCccccCC
Q 045318 1078 LHIQSCHDLRTLIDEDQISGMKKDGDIPSGSSSYTC-LLERLHIEDCPSLTSLFSL-KGLPATLEDIKVKNCSKLLFLSK 1155 (1388)
Q Consensus 1078 L~l~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~~~-~L~~L~l~~c~~l~~l~~~-~~~~~sL~~L~l~~c~~l~~l~~ 1155 (1388)
|++..+. |. .+|+.+...+. +|..|..+. ..+...+.. ....+.|+.|++.++..-....+
T Consensus 315 LdL~~N~-L~---------------~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 315 LDLQSNN-LP---------------SLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred eeehhcc-cc---------------ccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 6655441 22 23332222111 133333332 333333221 12223366666665433333334
Q ss_pred CCCCccccccEEeccCCCccccccCCCCCCCcceeccchhhhhhhccccceEeecCCCCccccCCcCCc-CccceEEecc
Q 045318 1156 RGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPNNLHQ-FSIEILLIQD 1234 (1388)
Q Consensus 1156 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~-~~L~~L~l~~ 1234 (1388)
......+|+.|++++ +.+.+||... +.+++.|++|+++| ++|+.+|..... ..|++|...+
T Consensus 378 ~l~~~~hLKVLhLsy-NrL~~fpas~----------------~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSY-NRLNSFPASK----------------LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred hhccccceeeeeecc-cccccCCHHH----------------HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC
Confidence 444456777777777 3566666432 35566777777777 567777755443 5666666655
Q ss_pred CCCCcccCCCCCCCccceeecccccCCcchhcccccccCccceeEecCCCCCccccCcccccccCC-CccceeecccCCC
Q 045318 1235 CPSLGSFTADCFPTKVSALGIDYLTIHKPFFELGLRRFTSLRELRLYGGSRDVVAFPPEDTKMALP-ASLTFLWIDNFPN 1313 (1388)
Q Consensus 1235 c~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~sL~~L~l~~~~~ 1313 (1388)
+ .+..+|. +.++++|+.+||+.|+.....+++ ..| +.|+.|++++|..
T Consensus 440 N-~l~~fPe-------------------------~~~l~qL~~lDlS~N~L~~~~l~~-----~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 440 N-QLLSFPE-------------------------LAQLPQLKVLDLSCNNLSEVTLPE-----ALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred C-ceeechh-------------------------hhhcCcceEEecccchhhhhhhhh-----hCCCcccceeeccCCcc
Confidence 4 3444553 445566666666654444444443 344 6677777776664
Q ss_pred CCCcc-CCCCCCCcCcEeec
Q 045318 1314 LLRLS-SIENLTSLQFLRFR 1332 (1388)
Q Consensus 1314 l~~l~-~~~~l~~L~~L~l~ 1332 (1388)
+..-. .+..+.++...++.
T Consensus 489 l~~d~~~l~~l~~l~~~~i~ 508 (1081)
T KOG0618|consen 489 LVFDHKTLKVLKSLSQMDIT 508 (1081)
T ss_pred cccchhhhHHhhhhhheecc
Confidence 22211 34444444444443
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=5.8e-21 Score=252.67 Aligned_cols=375 Identities=21% Similarity=0.300 Sum_probs=244.3
Q ss_pred chhhhccCCCcceEEEeeeeeee---ecccCCccccCC-CCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecC
Q 045318 934 TGLLNQELPILEELAICNTKVTY---LWQTGSGLLQDI-SSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRS 1009 (1388)
Q Consensus 934 ~~~~~~~l~~L~~L~l~~~~l~~---l~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~ 1009 (1388)
....+..+++|+.|.+.++.... +....+..+..+ ++|+.|.+.+++ ++.+|.. + .+.+|+.|++++
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~-------f-~~~~L~~L~L~~ 620 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSN-------F-RPENLVKLQMQG 620 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCc-------C-CccCCcEEECcC
Confidence 34455677888888776543211 100111223333 357777776643 4555543 2 256777777777
Q ss_pred CCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccc-cCCCCccEEEeecCcCccc
Q 045318 1010 CPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARV-QLPPSLKLLHIQSCHDLRT 1088 (1388)
Q Consensus 1010 ~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~sL~~L~l~~c~~L~~ 1088 (1388)
|. +..+|..+..+++|+.|++++|..++.+|. + ..+++|+.|++.+|..+..+|.. ..+++|+.|++++|..++
T Consensus 621 s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-l--s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~- 695 (1153)
T PLN03210 621 SK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-L--SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE- 695 (1153)
T ss_pred cc-ccccccccccCCCCCEEECCCCCCcCcCCc-c--ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC-
Confidence 64 445666666777777777777776666664 2 33667777777777776666643 345677777777777666
Q ss_pred chhhhhhccCCCCCCCCCCCCccccccceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCCCccccccEEe
Q 045318 1089 LIDEDQISGMKKDGDIPSGSSSYTCLLERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGALPKVLKDLYI 1168 (1388)
Q Consensus 1089 ~~~~~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l 1168 (1388)
.+|..+ .+.+ |+.|.+++|..+..++. .+.+|+.|+++++ .+..+|.. ..+++|++|.+
T Consensus 696 --------------~Lp~~i-~l~s-L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n-~i~~lP~~-~~l~~L~~L~l 754 (1153)
T PLN03210 696 --------------ILPTGI-NLKS-LYRLNLSGCSRLKSFPD---ISTNISWLDLDET-AIEEFPSN-LRLENLDELIL 754 (1153)
T ss_pred --------------ccCCcC-CCCC-CCEEeCCCCCCcccccc---ccCCcCeeecCCC-cccccccc-ccccccccccc
Confidence 344433 3333 77777777776666532 3445777777653 35555432 23466666666
Q ss_pred ccCCCccccccCCCCCCCcceeccchhhhhhhccccceEeecCCCCccccCCcCCc-CccceEEeccCCCCcccCCCCCC
Q 045318 1169 YECSELESIAEGLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPNNLHQ-FSIEILLIQDCPSLGSFTADCFP 1247 (1388)
Q Consensus 1169 ~~c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~ 1247 (1388)
.+|... .++........ .....+++|+.|+|++|+.+..+|..+.. ++|+.|++.+|++++.+|....+
T Consensus 755 ~~~~~~-~l~~~~~~l~~---------~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L 824 (1153)
T PLN03210 755 CEMKSE-KLWERVQPLTP---------LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINL 824 (1153)
T ss_pred cccchh-hccccccccch---------hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCc
Confidence 665321 12111110000 00123578999999999999999987665 89999999999999999877667
Q ss_pred CccceeecccccCCcchhcccccccCccceeEecCCCCCccccCcccccccCCCccceeecccCCCCCCcc-CCCCCCCc
Q 045318 1248 TKVSALGIDYLTIHKPFFELGLRRFTSLRELRLYGGSRDVVAFPPEDTKMALPASLTFLWIDNFPNLLRLS-SIENLTSL 1326 (1388)
Q Consensus 1248 ~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~-~~~~l~~L 1326 (1388)
++|+.|++++|.....++. ..++|+.|+|++ +.++.+|... ..+++|+.|++++|++++.++ .+.++++|
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~--n~i~~iP~si---~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPD----ISTNISDLNLSR--TGIEEVPWWI---EKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred cccCEEECCCCCccccccc----cccccCEeECCC--CCCccChHHH---hcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 8999999999983323332 246899999988 4566777655 577899999999999999999 88899999
Q ss_pred CcEeecCCCCCccCCCCCCC--------------CccceeeeccCcchHH
Q 045318 1327 QFLRFRNCPKLEYFPENGLP--------------TSLLRLQIIACPLMKE 1362 (1388)
Q Consensus 1327 ~~L~l~~c~~l~~l~~~~l~--------------~sL~~L~i~~c~~L~~ 1362 (1388)
+.|++++|++++.++-...+ ++...+.+.+|.+|.+
T Consensus 896 ~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 896 ETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred CeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 99999999998865432222 2334567888887764
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=1.6e-23 Score=230.23 Aligned_cols=176 Identities=21% Similarity=0.254 Sum_probs=112.6
Q ss_pred CceeeEEEeCCcccc--ccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 564 LQCLRVLCLREYNIC--KISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 564 l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
++..|-.|+++|.++ .+|.++..|..++.|.|..+.+..+|+.++.|.+|++|.+++|. +..+...+..|+.||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHHh
Confidence 455666777777776 67777777777777777777777777777777777777777763 444555667777777777
Q ss_pred cCCCCC-cccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEE
Q 045318 642 NYNVPL-LEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFL 720 (1388)
Q Consensus 642 l~~~~~-~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L 720 (1388)
+..|++ ..++|..|-+|..|.+| +|
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~l------------------------------------------------------DL 110 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTIL------------------------------------------------------DL 110 (1255)
T ss_pred hhccccccCCCCchhcccccceee------------------------------------------------------ec
Confidence 766653 22455555554444443 22
Q ss_pred EeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceee
Q 045318 721 EWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLS 800 (1388)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~ 800 (1388)
+.|.+.. +...|..-+++-.|+++.+.+.++|..++- .+.-|-.|+|++|.+....|.+..|.+|++|.
T Consensus 111 ShNqL~E----------vP~~LE~AKn~iVLNLS~N~IetIPn~lfi-nLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 111 SHNQLRE----------VPTNLEYAKNSIVLNLSYNNIETIPNSLFI-NLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred chhhhhh----------cchhhhhhcCcEEEEcccCccccCCchHHH-hhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 2222221 111122333444455555555556665543 46777888999888776666788888888888
Q ss_pred ccCCc
Q 045318 801 IIGMA 805 (1388)
Q Consensus 801 L~~~~ 805 (1388)
|++|+
T Consensus 180 Ls~NP 184 (1255)
T KOG0444|consen 180 LSNNP 184 (1255)
T ss_pred cCCCh
Confidence 88885
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3.4e-22 Score=219.05 Aligned_cols=360 Identities=19% Similarity=0.189 Sum_probs=218.1
Q ss_pred eeEEEeCCccccccc-cccccCc--ccceeeccCcccccc-ccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 567 LRVLCLREYNICKIS-NTIGDLK--HLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 567 Lr~L~L~~~~i~~lp-~~i~~l~--~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
-+.||.+++.+..+. ..+..+- .-++|++++|.+..+ +..|.+|+||+.+++.+| .+..+|...+...+|++|++
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEee
Confidence 345667776665542 1222222 234578888777766 556777777777777775 56667765556666777777
Q ss_pred CCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEe
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
.+|.+. .+. ...++.++.|+.|+|+.
T Consensus 133 ~~N~I~-sv~-----------------------------------------------------se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 133 RHNLIS-SVT-----------------------------------------------------SEELSALPALRSLDLSR 158 (873)
T ss_pred eccccc-ccc-----------------------------------------------------HHHHHhHhhhhhhhhhh
Confidence 766521 110 12344456677788887
Q ss_pred eCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceeec
Q 045318 723 TNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLSI 801 (1388)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 801 (1388)
|.+...... .+..-.++++|++++|.++.+...-++ .+.+|..|.|+.|.+....+ .|..||+|+.|+|
T Consensus 159 N~is~i~~~---------sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 159 NLISEIPKP---------SFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDL 228 (873)
T ss_pred chhhcccCC---------CCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhc
Confidence 776552211 233446899999999988877655544 57789999999988766444 6788999999999
Q ss_pred cCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCC----CCCCCc
Q 045318 802 IGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLP----EHLPSL 877 (1388)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p----~~l~~L 877 (1388)
..|.+-...+..|.| +++|+.|.+.. |.+. .+. ..+.++
T Consensus 229 nrN~irive~ltFqg-----------------------------------L~Sl~nlklqr-N~I~-kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQG-----------------------------------LPSLQNLKLQR-NDIS-KLDDGAFYGLEKM 271 (873)
T ss_pred cccceeeehhhhhcC-----------------------------------chhhhhhhhhh-cCcc-cccCcceeeeccc
Confidence 887432221222222 34444444444 3332 111 111222
Q ss_pred cEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeee
Q 045318 878 KTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYL 957 (1388)
Q Consensus 878 ~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l 957 (1388)
++|++.. +.. ......+.-++..|+.|++++|.+..+
T Consensus 272 e~l~L~~---------------------N~l----------------------~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 272 EHLNLET---------------------NRL----------------------QAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred ceeeccc---------------------chh----------------------hhhhcccccccchhhhhccchhhhhee
Confidence 2222211 100 001222335677788888888887777
Q ss_pred cccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccceEEEccCCCC
Q 045318 958 WQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSM 1037 (1388)
Q Consensus 958 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l 1037 (1388)
.. +.....++|++|++++ +.++.++.+. +..++.|+.|+|++|.+...-...|.++.+|++|||++|...
T Consensus 309 h~---d~WsftqkL~~LdLs~-N~i~~l~~~s------f~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls 378 (873)
T KOG4194|consen 309 HI---DSWSFTQKLKELDLSS-NRITRLDEGS------FRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELS 378 (873)
T ss_pred ec---chhhhcccceeEeccc-cccccCChhH------HHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEE
Confidence 44 3355667888888887 5667776655 556777888888888776655666777888888888888653
Q ss_pred ccC---hhhhccCCCCCccceeeccCCCccccccc--cCCCCccEEEeecCc
Q 045318 1038 KSL---PEALMHNDNAPLESLNVVDCNSLTYIARV--QLPPSLKLLHIQSCH 1084 (1388)
Q Consensus 1038 ~~~---p~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~sL~~L~l~~c~ 1084 (1388)
-.+ ...+ ..+++|+.|.+.++ .++.++.. ..+.+|++|++.++.
T Consensus 379 ~~IEDaa~~f--~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 379 WCIEDAAVAF--NGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred EEEecchhhh--ccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 332 2222 44777888888764 46666644 335677777776653
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.83 E-value=6.6e-23 Score=237.65 Aligned_cols=97 Identities=32% Similarity=0.399 Sum_probs=70.9
Q ss_pred eeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCC
Q 045318 566 CLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNV 645 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 645 (1388)
+|+.||+++|.+..+|..+..+.+|+.|+++.|.|...|.+++++.+|++|+|.+| .+..+|.++..+++|++|++++|
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N 124 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSFN 124 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccccchh
Confidence 37777777777777777777777777777777777777777777777777777764 56777777777777777777777
Q ss_pred CCcccCcCCCCCCCCCCCC
Q 045318 646 PLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 646 ~~~~~~p~~i~~L~~L~~L 664 (1388)
. ...+|..+..++.+..+
T Consensus 125 ~-f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 125 H-FGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred c-cCCCchhHHhhhHHHHH
Confidence 6 45566655555555544
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.83 E-value=1.5e-23 Score=219.74 Aligned_cols=231 Identities=25% Similarity=0.329 Sum_probs=102.6
Q ss_pred ccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 562 LKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
.++..|.||++++|.+..+|.+++.+..++.|+.++|++.++|+.++.+.+|..|+.++| ....+|++|+.+..|..|+
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhh
Confidence 444455555555555555555555555555555555555555555555555555555554 3344444555555555555
Q ss_pred cCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEE
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLE 721 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 721 (1388)
..+|+ ....|.+++.+.+|..|...+.. ... .....-.++.|+ + +..+...-+..+..++.+.+|..|+|.
T Consensus 144 ~~~N~-i~slp~~~~~~~~l~~l~~~~n~-l~~-l~~~~i~m~~L~-~-----ld~~~N~L~tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 144 ATNNQ-ISSLPEDMVNLSKLSKLDLEGNK-LKA-LPENHIAMKRLK-H-----LDCNSNLLETLPPELGGLESLELLYLR 214 (565)
T ss_pred ccccc-cccCchHHHHHHHHHHhhccccc-hhh-CCHHHHHHHHHH-h-----cccchhhhhcCChhhcchhhhHHHHhh
Confidence 55444 33444444444444433211110 000 000000111111 0 001111112233445555555555555
Q ss_pred eeCCCCCCCCc-------------hhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC
Q 045318 722 WTNSSGSSREP-------------ETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP 788 (1388)
Q Consensus 722 ~~~~~~~~~~~-------------~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 788 (1388)
.|.+...+... +...-.-+.+..+..+..|++..+....+|..+.. +.+|++|++++|.+....+
T Consensus 215 ~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~is~Lp~ 292 (565)
T KOG0472|consen 215 RNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDISSLPY 292 (565)
T ss_pred hcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCccccCCc
Confidence 55543211000 00001112233445555666666666566655543 4556666666665555444
Q ss_pred CCCCCCCcceeeccCCc
Q 045318 789 SIGQLPALKHLSIIGMA 805 (1388)
Q Consensus 789 ~l~~l~~L~~L~L~~~~ 805 (1388)
.+|.+ .|+.|-+.||+
T Consensus 293 sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNP 308 (565)
T ss_pred ccccc-eeeehhhcCCc
Confidence 56655 56666665554
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.7e-21 Score=214.46 Aligned_cols=205 Identities=20% Similarity=0.226 Sum_probs=109.5
Q ss_pred HHHhhccCceeeEEEeCCccccccccccccCcccceeeccCcccc--ccccchhcccccceeecCCCcchhhcchhhccc
Q 045318 557 VVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIE--TLPESVNTLYNLHTLLLESCSRLKKLCADMGNL 634 (1388)
Q Consensus 557 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 634 (1388)
+|..+..+++|+.|.+.+|++..+...+..|+.||.+.+++|+++ -+|..|.+|..|.+|||++| .+.+.|..+..-
T Consensus 47 vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~A 125 (1255)
T KOG0444|consen 47 VPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYA 125 (1255)
T ss_pred ChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhh
Confidence 444445555555555555555555555555555555555555444 34555555555555555554 345555555555
Q ss_pred CCCCeeecCCCCCcccCcCC-CCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCC
Q 045318 635 IKLRHLNNYNVPLLEGMPLR-IGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKR 713 (1388)
Q Consensus 635 ~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~ 713 (1388)
+++-+|++++|+ +..+|.. +-+|+.|-.| .++++. -+..+.....+.
T Consensus 126 Kn~iVLNLS~N~-IetIPn~lfinLtDLLfL-----------------------------DLS~Nr--Le~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 126 KNSIVLNLSYNN-IETIPNSLFINLTDLLFL-----------------------------DLSNNR--LEMLPPQIRRLS 173 (1255)
T ss_pred cCcEEEEcccCc-cccCCchHHHhhHhHhhh-----------------------------ccccch--hhhcCHHHHHHh
Confidence 555555555555 4444432 2233333333 111111 112233445566
Q ss_pred CCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCC--CCCCcccCCCCCCCccEEeeecCCCCCCCCCCC
Q 045318 714 NLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGG--ANFPIWLGDSTFSNLELLRFENCAMCTSLPSIG 791 (1388)
Q Consensus 714 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~--~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 791 (1388)
+|+.|.|++|.+.. ..+..|-.+..|+.|++++..- ..+|..+.+ +.||..++++.|.+......+-
T Consensus 174 ~LqtL~Ls~NPL~h---------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~--l~NL~dvDlS~N~Lp~vPecly 242 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNH---------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD--LHNLRDVDLSENNLPIVPECLY 242 (1255)
T ss_pred hhhhhhcCCChhhH---------HHHhcCccchhhhhhhcccccchhhcCCCchhh--hhhhhhccccccCCCcchHHHh
Confidence 67777777665332 2344455555666666666542 356666653 6777777777765544333566
Q ss_pred CCCCcceeeccCCc
Q 045318 792 QLPALKHLSIIGMA 805 (1388)
Q Consensus 792 ~l~~L~~L~L~~~~ 805 (1388)
.+++|+.|+|++|.
T Consensus 243 ~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNK 256 (1255)
T ss_pred hhhhhheeccCcCc
Confidence 77777777777774
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.8e-13 Score=166.88 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=55.6
Q ss_pred ceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCC
Q 045318 565 QCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYN 644 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 644 (1388)
..-.+|+|+++.++.+|..+. .+|+.|++++|.++.+|.. +++|++|++++| .+..+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 446688999999999998776 4899999999999998863 577888888887 45566642 35677777777
Q ss_pred CC
Q 045318 645 VP 646 (1388)
Q Consensus 645 ~~ 646 (1388)
|.
T Consensus 272 N~ 273 (788)
T PRK15387 272 NP 273 (788)
T ss_pred Cc
Confidence 65
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=3.4e-13 Score=164.49 Aligned_cols=171 Identities=27% Similarity=0.328 Sum_probs=94.5
Q ss_pred cceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCCCccccccEEeccCCCccccccCCCCCCCcceeccch
Q 045318 1115 LERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGA 1194 (1388)
Q Consensus 1115 L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~ 1194 (1388)
|+.|++++ +.++.++. .+++|+.|++++| .+..++. .+.+|+.|++++| .+..+|..
T Consensus 284 L~~L~Ls~-N~Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~---lp~~L~~L~Ls~N-~L~~LP~l-------------- 340 (788)
T PRK15387 284 LCKLWIFG-NQLTSLPV---LPPGLQELSVSDN-QLASLPA---LPSELCKLWAYNN-QLTSLPTL-------------- 340 (788)
T ss_pred cCEEECcC-Cccccccc---cccccceeECCCC-ccccCCC---CcccccccccccC-cccccccc--------------
Confidence 55555555 24444432 2344666666553 4444432 2344556666553 34433320
Q ss_pred hhhhhhccccceEeecCCCCccccCCcCCcCccceEEeccCCCCcccCCCCCCCccceeecccccCCcchhcccccccCc
Q 045318 1195 VQFLKFYLKLTMLDINGCEKLMALPNNLHQFSIEILLIQDCPSLGSFTADCFPTKVSALGIDYLTIHKPFFELGLRRFTS 1274 (1388)
Q Consensus 1195 ~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~ 1274 (1388)
.++|+.|++++ ++++.+|.. .++|+.|+++++ .+..+|. .+.+|+.|++++|.+.. ++. ..++
T Consensus 341 ------p~~Lq~LdLS~-N~Ls~LP~l--p~~L~~L~Ls~N-~L~~LP~--l~~~L~~LdLs~N~Lt~-LP~----l~s~ 403 (788)
T PRK15387 341 ------PSGLQELSVSD-NQLASLPTL--PSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLTS-LPV----LPSE 403 (788)
T ss_pred ------ccccceEecCC-CccCCCCCC--Ccccceehhhcc-ccccCcc--cccccceEEecCCcccC-CCC----cccC
Confidence 13566666665 455666542 245666666654 3444543 34566777777766542 221 1246
Q ss_pred cceeEecCCCCCccccCcccccccCCCccceeecccCCCCCCcc-CCCCCCCcCcEeecCC
Q 045318 1275 LRELRLYGGSRDVVAFPPEDTKMALPASLTFLWIDNFPNLLRLS-SIENLTSLQFLRFRNC 1334 (1388)
Q Consensus 1275 L~~L~l~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c 1334 (1388)
|+.|++++| .+..+|. .+.+|+.|++++|. ++.+| .+.++++|+.|+++++
T Consensus 404 L~~LdLS~N--~LssIP~------l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 404 LKELMVSGN--RLTSLPM------LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred CCEEEccCC--cCCCCCc------chhhhhhhhhccCc-ccccChHHhhccCCCeEECCCC
Confidence 777777773 3455553 34567777777765 66777 6777777888888774
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=2e-15 Score=159.40 Aligned_cols=118 Identities=24% Similarity=0.245 Sum_probs=85.3
Q ss_pred cccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccCcccceeeccC-cccccccc-chhcccccceeecCCCcc
Q 045318 547 TFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSE-TLIETLPE-SVNTLYNLHTLLLESCSR 623 (1388)
Q Consensus 547 ~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~L~~~~~ 623 (1388)
++..|.|+...+..|+.++.||.|||++|.|+.| |++|..|..|-.|-+.+ |+|+.+|. .|++|..|+.|.+.-|..
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i 152 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHI 152 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhh
Confidence 4566777766677778888888888888888876 57787787777666655 78888876 567788888888877655
Q ss_pred hhhcchhhcccCCCCeeecCCCCCcccCcC-CCCCCCCCCCCC
Q 045318 624 LKKLCADMGNLIKLRHLNNYNVPLLEGMPL-RIGHLSCLQTLP 665 (1388)
Q Consensus 624 ~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~ 665 (1388)
.-.....+..|++|+.|.+.+|. ...++. .+..+.+++++.
T Consensus 153 ~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 153 NCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred cchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHh
Confidence 55555677788888888888776 455554 566677777663
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=3.3e-15 Score=157.77 Aligned_cols=103 Identities=23% Similarity=0.269 Sum_probs=86.0
Q ss_pred eeEEEeCCccccccc-cccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcch-hhcccCCCCeeecC
Q 045318 567 LRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCA-DMGNLIKLRHLNNY 643 (1388)
Q Consensus 567 Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~ 643 (1388)
-..++|..|.|+.|| .+|+.+++||.||||+|.|+.| |.+|..|..|-.|-+.++..++.+|. .|++|..|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 467899999999999 6899999999999999999999 99999999998888888668888885 58999999999988
Q ss_pred CCCCcccCcCCCCCCCCCCCCCceEe
Q 045318 644 NVPLLEGMPLRIGHLSCLQTLPYFVV 669 (1388)
Q Consensus 644 ~~~~~~~~p~~i~~L~~L~~L~~~~~ 669 (1388)
-|++.-.....+..|.+|..|..++.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccch
Confidence 88733333345777888887755544
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=2.6e-12 Score=158.29 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=63.0
Q ss_pred ceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCC
Q 045318 565 QCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYN 644 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 644 (1388)
.+..+|+++++.++.+|..+. .+|+.|+|++|.|+.+|..+. .+|++|++++|. +..+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 456889999999999987664 589999999999999988765 589999999874 567776554 4788888888
Q ss_pred CCCcccCcC
Q 045318 645 VPLLEGMPL 653 (1388)
Q Consensus 645 ~~~~~~~p~ 653 (1388)
|. +..+|.
T Consensus 251 N~-L~~LP~ 258 (754)
T PRK15370 251 NR-ITELPE 258 (754)
T ss_pred Cc-cCcCCh
Confidence 87 334554
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.28 E-value=1.2e-11 Score=152.44 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=80.3
Q ss_pred cceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCCCccccccEEeccCCCccccccCCCCCCCcceeccch
Q 045318 1115 LERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGA 1194 (1388)
Q Consensus 1115 L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~ 1194 (1388)
|+.|++++ +.++.++. .++.+|+.|++++| ++..+|.. .+++|+.|++++| .+..+|...
T Consensus 264 L~~L~Ls~-N~L~~LP~--~l~~sL~~L~Ls~N-~Lt~LP~~--lp~sL~~L~Ls~N-~Lt~LP~~l------------- 323 (754)
T PRK15370 264 LQSLDLFH-NKISCLPE--NLPEELRYLSVYDN-SIRTLPAH--LPSGITHLNVQSN-SLTALPETL------------- 323 (754)
T ss_pred CCEEECcC-CccCcccc--ccCCCCcEEECCCC-ccccCccc--chhhHHHHHhcCC-ccccCCccc-------------
Confidence 66666653 45555432 23345666666553 34444321 1245666666653 344443221
Q ss_pred hhhhhhccccceEeecCCCCccccCCcCCcCccceEEeccCCCCcccCCCCCCCccceeecccccCCcchhcccccccCc
Q 045318 1195 VQFLKFYLKLTMLDINGCEKLMALPNNLHQFSIEILLIQDCPSLGSFTADCFPTKVSALGIDYLTIHKPFFELGLRRFTS 1274 (1388)
Q Consensus 1195 ~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~ 1274 (1388)
.++|+.|++++| .++.+|..+ .++|+.|++++| .+..+|. .++++|+.|++++|.+... +.. + ..+
T Consensus 324 ------~~sL~~L~Ls~N-~Lt~LP~~l-~~sL~~L~Ls~N-~L~~LP~-~lp~~L~~LdLs~N~Lt~L-P~~-l--~~s 389 (754)
T PRK15370 324 ------PPGLKTLEAGEN-ALTSLPASL-PPELQVLDVSKN-QITVLPE-TLPPTITTLDVSRNALTNL-PEN-L--PAA 389 (754)
T ss_pred ------cccceeccccCC-ccccCChhh-cCcccEEECCCC-CCCcCCh-hhcCCcCEEECCCCcCCCC-CHh-H--HHH
Confidence 145666666664 355555433 256666666666 3444543 3455666666666665421 211 1 124
Q ss_pred cceeEecCCCCCccccCccccc-ccCCCccceeecccCC
Q 045318 1275 LRELRLYGGSRDVVAFPPEDTK-MALPASLTFLWIDNFP 1312 (1388)
Q Consensus 1275 L~~L~l~~~~~~~~~~~~~~~~-~~~~~sL~~L~l~~~~ 1312 (1388)
|+.|++++| .+..+|..... ....+++..|++.+|+
T Consensus 390 L~~LdLs~N--~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 390 LQIMQASRN--NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred HHHHhhccC--CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 666666662 33444443211 1123456666666666
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=8.7e-14 Score=129.44 Aligned_cols=97 Identities=28% Similarity=0.351 Sum_probs=62.6
Q ss_pred CceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecC
Q 045318 564 LQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNY 643 (1388)
Q Consensus 564 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1388)
+.+.+.|-|++|.++.+|..|..|.+|++|++++|+|+++|.+|+.+++|+.|++.-| .+..+|.+|+.++-|+.|++.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhcc
Confidence 3445556677777777777777777777777777777777777777777777777664 455667777777777777776
Q ss_pred CCCCcc-cCcCCCCCCCCC
Q 045318 644 NVPLLE-GMPLRIGHLSCL 661 (1388)
Q Consensus 644 ~~~~~~-~~p~~i~~L~~L 661 (1388)
+|+..+ .+|..+--++.|
T Consensus 111 ynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred ccccccccCCcchhHHHHH
Confidence 665322 344444333333
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.23 E-value=5.1e-12 Score=158.19 Aligned_cols=123 Identities=33% Similarity=0.356 Sum_probs=96.9
Q ss_pred cCceeeEEEeCCcc--cccccc-ccccCcccceeeccCc-cccccccchhcccccceeecCCCcchhhcchhhcccCCCC
Q 045318 563 KLQCLRVLCLREYN--ICKISN-TIGDLKHLRHLDLSET-LIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLR 638 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~--i~~lp~-~i~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 638 (1388)
..+.|++|-+.+|. +..++. .|..+++||+|||++| .+.+||++|+.|.+||+|+++++ .+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 44579999999986 677774 5788999999999976 67899999999999999999995 7889999999999999
Q ss_pred eeecCCCCCcccCcCCCCCCCCCCCCCceEec-cCCCCCcccccccccc
Q 045318 639 HLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVG-KNTGSQLRELKFLENL 686 (1388)
Q Consensus 639 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~-~~~~~~~~~l~~L~~L 686 (1388)
+|++..+.....+|..+..|.+|++|..+... ..+...+.++.+|++|
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHL 670 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccch
Confidence 99999988666776666679999999665543 2233334444444433
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.20 E-value=6.2e-13 Score=123.85 Aligned_cols=82 Identities=26% Similarity=0.373 Sum_probs=74.8
Q ss_pred ccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCC
Q 045318 583 TIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQ 662 (1388)
Q Consensus 583 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 662 (1388)
.+.++.+...|.||+|+++.+|..|..|.+|++|++++| .+.++|.++..|++|++|+++-|. +..+|.++|.++.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence 456788899999999999999999999999999999987 688999999999999999999988 778999999999998
Q ss_pred CCCc
Q 045318 663 TLPY 666 (1388)
Q Consensus 663 ~L~~ 666 (1388)
.|+.
T Consensus 106 vldl 109 (264)
T KOG0617|consen 106 VLDL 109 (264)
T ss_pred hhhc
Confidence 8843
No 24
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.08 E-value=6.8e-09 Score=116.12 Aligned_cols=181 Identities=20% Similarity=0.174 Sum_probs=114.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHH----HHHHHHHhh-
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLN----SLQVKLKDG- 285 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~----~~~~~l~~~- 285 (1388)
.++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..+++..|...++..... .+.. .+...+...
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQF 119 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999864321 11 12233 334557788899999888765432 2222 222333222
Q ss_pred cCCceEEEEEeCCCCCChhhhhhhccccc---CCCCCcEEEEEcCChhHHhhcC----------CCceEeCCCCChhhHH
Q 045318 286 LSRKKFLLVLDDMWNDNYGDWTSLRLPFV---AGASGSKIIVTTRNQSVASMMG----------SVSAYELKKLTDDDCR 352 (1388)
Q Consensus 286 l~~k~~LlVlDdv~~~~~~~~~~l~~~~~---~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~ 352 (1388)
..++++++|+||+|......++.+..... +......|++|.... ...... ....+++++++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 26788999999998876666666543221 112233556665443 221111 1235789999999999
Q ss_pred HHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhh
Q 045318 353 LVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLL 396 (1388)
Q Consensus 353 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 396 (1388)
+++...+...+......-..+..+.|++.++|.|..|..++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 98887653222111111224778999999999999998888765
No 25
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.05 E-value=4.5e-09 Score=124.70 Aligned_cols=211 Identities=14% Similarity=0.105 Sum_probs=131.2
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHH
Q 045318 179 NEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
.+..++||+++++++...+.....+ .....+.|+|++|+|||++++.++++.......-..+++.+....+...++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~----~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG----SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 4467999999999999998543211 233457899999999999999999874322222345666666667788899
Q ss_pred HHHHHHhcCCCC--CCCcHHHHHHHHHhhcC--CceEEEEEeCCCCCC----hhhhhhhcccccCCCCCc--EEEEEcCC
Q 045318 259 KAILRSICMHTD--ADDDLNSLQVKLKDGLS--RKKFLLVLDDMWNDN----YGDWTSLRLPFVAGASGS--KIIVTTRN 328 (1388)
Q Consensus 259 ~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~~~~~~~gs--~iivTtR~ 328 (1388)
..|++++..... ...+.+++...+.+.++ ++..+||+|+++.-. .+.+..+...+.. ..++ .||.++..
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~ 182 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECC
Confidence 999999876321 22345666666766664 457899999996532 1223333322221 1233 36666665
Q ss_pred hhHHhhcC-------CCceEeCCCCChhhHHHHHHHcccCC--CCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 045318 329 QSVASMMG-------SVSAYELKKLTDDDCRLVFTQHSLGT--KDFSNHQHLKEIGEEILKKCNGLPLAAKTLGG 394 (1388)
Q Consensus 329 ~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 394 (1388)
..+..... ....+.+.+++.++..+++..++-.. ...-.+..++.+++......|..+.|+.++-.
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44333211 12467999999999999988775221 11122223334444444445667888777643
No 26
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.04 E-value=5.3e-09 Score=139.41 Aligned_cols=264 Identities=15% Similarity=0.186 Sum_probs=151.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeC-CccCHHHHHHHHHHHhcCCCCC-------------CC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVS-DDFDAIKVTKAILRSICMHTDA-------------DD 273 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~-------------~~ 273 (1388)
...+++.|.|++|.||||++..+... ++.++|+++. .+.++..+...++..+...... ..
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 103 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYA 103 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcC
Confidence 34589999999999999999998853 2368999986 4556666767777766421110 01
Q ss_pred cHHHHHHHHHhhcC--CceEEEEEeCCCCCChhhhhhhcccccC-CCCCcEEEEEcCChhHH---hhcCCCceEeCC---
Q 045318 274 DLNSLQVKLKDGLS--RKKFLLVLDDMWNDNYGDWTSLRLPFVA-GASGSKIIVTTRNQSVA---SMMGSVSAYELK--- 344 (1388)
Q Consensus 274 ~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~---~~~~~~~~~~l~--- 344 (1388)
+...+...+...+. +.+++||+||+...+......+...+.. ...+.++|||||...-. .........++.
T Consensus 104 ~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~ 183 (903)
T PRK04841 104 SLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQ 183 (903)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHh
Confidence 22223333333332 6789999999966543333333333333 34567898999984211 111112345565
Q ss_pred -CCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHHHHHHHhhhccCCCC-CCCc
Q 045318 345 -KLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFDWRNVLNNKIWNLPE-EGGD 422 (1388)
Q Consensus 345 -~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-~~~~ 422 (1388)
+|+.+|+.++|.... +.. .. .+...+|.+.|+|.|+++..++..+........ ... +.+.. ....
T Consensus 184 l~f~~~e~~~ll~~~~-~~~---~~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~--~~~----~~~~~~~~~~ 250 (903)
T PRK04841 184 LAFDHQEAQQFFDQRL-SSP---IE---AAESSRLCDDVEGWATALQLIALSARQNNSSLH--DSA----RRLAGINASH 250 (903)
T ss_pred CCCCHHHHHHHHHhcc-CCC---CC---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchh--hhh----HhhcCCCchh
Confidence 999999999998654 111 11 255788999999999999998877754432100 000 00100 0001
Q ss_pred hhHhh--------HHHHHHHHHHcCCcCCCCCc----chHHHHHHHHHHHHHhCCCCccc--cCCCcccccchHHHHHHH
Q 045318 423 IMRAL--------KNDVVLVWMAEGLLEPDTSE----MKMEELGRSYFRELHSRSFFQKS--YMDSRFIMHDLITDLAQW 488 (1388)
Q Consensus 423 ~~~~l--------~~~li~~wia~g~i~~~~~~----~~~~~~~~~~~~~L~~~~li~~~--~~~~~~~mHdli~d~a~~ 488 (1388)
+..++ ....-+.-..-+........ ....+-+...+++|..+++|... .....|+.|++++++...
T Consensus 251 ~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~ 330 (903)
T PRK04841 251 LSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRH 330 (903)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHH
Confidence 22111 11222222222222210000 00012246689999999987643 234578999999999886
Q ss_pred hc
Q 045318 489 AA 490 (1388)
Q Consensus 489 ~~ 490 (1388)
..
T Consensus 331 ~l 332 (903)
T PRK04841 331 RC 332 (903)
T ss_pred HH
Confidence 54
No 27
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.97 E-value=2e-09 Score=118.20 Aligned_cols=195 Identities=22% Similarity=0.234 Sum_probs=99.1
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHH-
Q 045318 183 VHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAI- 261 (1388)
Q Consensus 183 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i- 261 (1388)
|+||++++++|.+++..+ ....+.|+|+.|+|||+|++++.+... ...+ ..+|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~--------~~~~~~l~G~rg~GKTsLl~~~~~~~~-~~~~-~~~y~~~~~~~~~~-~~~~~~ 69 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--------PSQHILLYGPRGSGKTSLLKEFINELK-EKGY-KVVYIDFLEESNES-SLRSFI 69 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh--------cCcEEEEEcCCcCCHHHHHHHHHHHhh-hcCC-cEEEEecccchhhh-HHHHHH
Confidence 789999999999988763 236789999999999999999998631 1111 34444443443222 12221
Q ss_pred ---------HHHhc----CCC------CCCCcHHHHHHHHHhhc--CCceEEEEEeCCCCCC------hhhhhhhccccc
Q 045318 262 ---------LRSIC----MHT------DADDDLNSLQVKLKDGL--SRKKFLLVLDDMWNDN------YGDWTSLRLPFV 314 (1388)
Q Consensus 262 ---------~~~l~----~~~------~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~------~~~~~~l~~~~~ 314 (1388)
...+. ... ............+.+.+ .+++++||+||+.... ..-...+...+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 11121 110 01111122222232333 2455999999995432 111222332222
Q ss_pred C--CCCCcEEEEEcCChhHHhh--------cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC
Q 045318 315 A--GASGSKIIVTTRNQSVASM--------MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG 384 (1388)
Q Consensus 315 ~--~~~gs~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 384 (1388)
. ....-.+|+++-...+... .+....+.+++++.+++++++...+-.. ..- +.-.+..++|...+||
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG 226 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGG 226 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT
T ss_pred hccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCC
Confidence 2 1233344444444434332 2223459999999999999999864222 111 1123556999999999
Q ss_pred ChHHHHH
Q 045318 385 LPLAAKT 391 (1388)
Q Consensus 385 ~Plai~~ 391 (1388)
+|..|..
T Consensus 227 ~P~~l~~ 233 (234)
T PF01637_consen 227 NPRYLQE 233 (234)
T ss_dssp -HHHHHH
T ss_pred CHHHHhc
Confidence 9988754
No 28
>PF05729 NACHT: NACHT domain
Probab=98.86 E-value=1e-08 Score=105.47 Aligned_cols=143 Identities=20% Similarity=0.254 Sum_probs=88.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccc----CCceEEEEeCCccCHH---HHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESH----FDLKAWTCVSDDFDAI---KVTKAILRSICMHTDADDDLNSLQVKLK 283 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 283 (1388)
+++.|+|.+|+||||+++.++.+...... +...+|+......... .+...|..+..... .........+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~~ 77 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQELL 77 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHHH
Confidence 47899999999999999999986433222 4456666665443322 33334433332211 11111111111
Q ss_pred hhcCCceEEEEEeCCCCCChh-------hhhhhcccccCC--CCCcEEEEEcCChhH---HhhcCCCceEeCCCCChhhH
Q 045318 284 DGLSRKKFLLVLDDMWNDNYG-------DWTSLRLPFVAG--ASGSKIIVTTRNQSV---ASMMGSVSAYELKKLTDDDC 351 (1388)
Q Consensus 284 ~~l~~k~~LlVlDdv~~~~~~-------~~~~l~~~~~~~--~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 351 (1388)
-+.++++||+|++++.... .+..+...+... .++.+|+||+|.... .........+++.++++++.
T Consensus 78 --~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 78 --EKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred --HcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 2578999999999764321 122222222222 578999999999766 33344446799999999999
Q ss_pred HHHHHHc
Q 045318 352 RLVFTQH 358 (1388)
Q Consensus 352 ~~lf~~~ 358 (1388)
.+++.++
T Consensus 156 ~~~~~~~ 162 (166)
T PF05729_consen 156 KQYLRKY 162 (166)
T ss_pred HHHHHHH
Confidence 9998775
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.85 E-value=1e-07 Score=111.83 Aligned_cols=207 Identities=11% Similarity=0.035 Sum_probs=123.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-ccC---CceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE-SHF---DLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F---~~~~wv~~s~~~~~~~ 256 (1388)
..++||++++++|..++.....+ .....+.|+|++|+|||++++.++++..-. ... -..+|+.+....+...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~----~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG----SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 47999999999999998652211 233568999999999999999999863211 111 1456777777777888
Q ss_pred HHHHHHHHhc---CCCC-CCCcHHHHHHHHHhhcC--CceEEEEEeCCCCCC---hhhhhhhcccc-cCCC--CCcEEEE
Q 045318 257 VTKAILRSIC---MHTD-ADDDLNSLQVKLKDGLS--RKKFLLVLDDMWNDN---YGDWTSLRLPF-VAGA--SGSKIIV 324 (1388)
Q Consensus 257 ~~~~i~~~l~---~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~l~~~~-~~~~--~gs~iiv 324 (1388)
++..|++++. .... ...+..+....+.+.+. +++++||||+++.-. ......+.... .... ....+|.
T Consensus 91 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~ 170 (365)
T TIGR02928 91 VLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIG 170 (365)
T ss_pred HHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEE
Confidence 9999999984 2211 12234445555555553 568899999996542 11122222210 1111 2334555
Q ss_pred EcCChhHHhhcC-------CCceEeCCCCChhhHHHHHHHcccCC-CCCCCCchHHHHHHHHHHHcCCCh-HHHHH
Q 045318 325 TTRNQSVASMMG-------SVSAYELKKLTDDDCRLVFTQHSLGT-KDFSNHQHLKEIGEEILKKCNGLP-LAAKT 391 (1388)
Q Consensus 325 TtR~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~g~P-lai~~ 391 (1388)
+|+.......+. ....+.+++.+.++..+++..++-.. ......++..+....++....|.| .|+.+
T Consensus 171 i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 171 ISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 554433221111 12468899999999999998876311 111122333344555677777877 44433
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.76 E-value=2.2e-09 Score=124.06 Aligned_cols=86 Identities=21% Similarity=0.195 Sum_probs=42.1
Q ss_pred hccCceeeEEEeCCccccc-------cccccccCcccceeeccCcccc-ccccchhcccc---cceeecCCCcch----h
Q 045318 561 LLKLQCLRVLCLREYNICK-------ISNTIGDLKHLRHLDLSETLIE-TLPESVNTLYN---LHTLLLESCSRL----K 625 (1388)
Q Consensus 561 ~~~l~~Lr~L~L~~~~i~~-------lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~~~----~ 625 (1388)
+...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+. ..+..+..+.+ |++|++++|... .
T Consensus 47 l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~ 126 (319)
T cd00116 47 LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR 126 (319)
T ss_pred HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH
Confidence 3444555666665554432 2234445556666666655554 23334444433 666666555432 1
Q ss_pred hcchhhccc-CCCCeeecCCCC
Q 045318 626 KLCADMGNL-IKLRHLNNYNVP 646 (1388)
Q Consensus 626 ~lp~~i~~L-~~L~~L~l~~~~ 646 (1388)
.+...+..+ ++|+.|++++|.
T Consensus 127 ~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 127 LLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHhCCCCceEEEcCCCc
Confidence 222334444 555666666555
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.75 E-value=2.8e-07 Score=105.40 Aligned_cols=193 Identities=19% Similarity=0.154 Sum_probs=103.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+|+|++..++.+..++....... .....+.|+|++|+||||+|+.+++... ..+ .++... .......+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~---~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~ 95 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRG---EALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAA 95 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcC---CCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHH
Confidence 569999999999888775421111 3345788999999999999999998632 221 111111 1111122223
Q ss_pred HHHHhcCCCC-CCCcHH----HHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhhc
Q 045318 261 ILRSICMHTD-ADDDLN----SLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMM 335 (1388)
Q Consensus 261 i~~~l~~~~~-~~~~~~----~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 335 (1388)
++..+....- -.++++ ...+.+...+.+.+..+|+|+..... .+...+ .+.+-|..|+|...+....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L 167 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPL 167 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHH
Confidence 3332221100 000111 11222333334444445555442211 000011 1245567777754443321
Q ss_pred C--CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 045318 336 G--SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGG 394 (1388)
Q Consensus 336 ~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 394 (1388)
. ....++++++++++..+++.+.+-.. ..... .+.+..|++.|+|.|-.+..+..
T Consensus 168 ~sRf~~~~~l~~~~~~e~~~il~~~~~~~-~~~~~---~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 168 RDRFGIVQRLEFYTVEELEKIVKRSARIL-GVEID---EEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHHc-CCCcC---HHHHHHHHHHcCCCchHHHHHHH
Confidence 1 12468999999999999999876332 22222 35688999999999965444443
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=1.2e-09 Score=126.28 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=66.2
Q ss_pred cccccc-hHHHHhhccCceeeEEEeCCcccc-----ccccccccCcccceeeccCccccc-------cccchhcccccce
Q 045318 549 SRHFLS-DSVVHMLLKLQCLRVLCLREYNIC-----KISNTIGDLKHLRHLDLSETLIET-------LPESVNTLYNLHT 615 (1388)
Q Consensus 549 ~~~~l~-~~~~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~ 615 (1388)
..+.+. ......+..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+.+|+.
T Consensus 6 ~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 85 (319)
T cd00116 6 KGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85 (319)
T ss_pred ccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeE
Confidence 334443 334445566777889999988873 455666777788888888876653 3445667778888
Q ss_pred eecCCCcchhhcchhhcccCC---CCeeecCCCC
Q 045318 616 LLLESCSRLKKLCADMGNLIK---LRHLNNYNVP 646 (1388)
Q Consensus 616 L~L~~~~~~~~lp~~i~~L~~---L~~L~l~~~~ 646 (1388)
|++++|......+..+..+.+ |++|++++|.
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence 888887665455555555555 8888887776
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.70 E-value=6.2e-07 Score=102.17 Aligned_cols=193 Identities=19% Similarity=0.150 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+|+|++..++++..++....... .....+.++|++|+|||+||+.+++... ..+ ..+.........+ +..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~---~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~~~-l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ---EALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKPGD-LAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCchh-HHH
Confidence 469999999999988886422111 3345678999999999999999998632 222 1121111111122 222
Q ss_pred HHHHhcCCCC-CCCcH----HHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhhc
Q 045318 261 ILRSICMHTD-ADDDL----NSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMM 335 (1388)
Q Consensus 261 i~~~l~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 335 (1388)
.+..+....- -.++. ....+.+...+.+.+..+|+|+..... .| ...+ .+.+-|.+|||...+....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPL 146 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHH
Confidence 2222221110 00111 112233444555555566666553321 11 1111 2355667777765443321
Q ss_pred C--CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 045318 336 G--SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGG 394 (1388)
Q Consensus 336 ~--~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 394 (1388)
. ....+++++++.++..+++.+.+... ....+ .+....|++.|+|.|-.+..++.
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~~-~~~~~---~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGLL-NVEIE---PEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHHh-CCCcC---HHHHHHHHHHhCCCcchHHHHHH
Confidence 1 12468999999999999999876322 22222 35678899999999966544443
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.67 E-value=1.2e-09 Score=117.61 Aligned_cols=287 Identities=17% Similarity=0.228 Sum_probs=152.6
Q ss_pred cceEEEecCCCCccccc--ccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccc---cCCCCc
Q 045318 1001 RLHYLELRSCPSLVKLP--QTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARV---QLPPSL 1075 (1388)
Q Consensus 1001 ~L~~L~L~~~~~~~~~p--~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~sL 1075 (1388)
-|+.|.+++|...+.-+ ....++++++.|.+.+|..++...-.-....+..|+.|++..|..++...-. ...++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 48889999987765432 3345688888899999886665432222245777888888888877755422 345777
Q ss_pred cEEEeecCcCcccchhhhhhccCCCCCCCCCCCCccccccceeecCCCCCccc--ccCCCCCCcccCceeEecCCCcccc
Q 045318 1076 KLLHIQSCHDLRTLIDEDQISGMKKDGDIPSGSSSYTCLLERLHIEDCPSLTS--LFSLKGLPATLEDIKVKNCSKLLFL 1153 (1388)
Q Consensus 1076 ~~L~l~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~sL~~L~l~~c~~l~~l 1153 (1388)
+++.++.|+.++.- .+ ..++.-+..++.+...+|..+.. +-.......-+..+++..|+.++..
T Consensus 219 ~~lNlSwc~qi~~~-------------gv-~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 219 KYLNLSWCPQISGN-------------GV-QALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHhhhccCchhhcC-------------cc-hHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 88888888766530 00 11111122255555556654432 1111111111444555566655543
Q ss_pred CC--CCCCccccccEEeccCCCccccccCCCCCCCcceeccchhhhhhhccccceEeecCCCCccccCC---cCCcCccc
Q 045318 1154 SK--RGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPN---NLHQFSIE 1228 (1388)
Q Consensus 1154 ~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~---~~~~~~L~ 1228 (1388)
.. .......|+.|..++|..+...+- ..+-++.++|+.|.+.+|..++..-. +-..+.|+
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l---------------~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVL---------------WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHH---------------HHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 21 122335667777777765543221 11124456777777777765544321 11125566
Q ss_pred eEEeccCCCCcccCCCCCCCccceeecccccCCcchhcccccccCccceeEecCCCCCccccCccccc-----ccCCCcc
Q 045318 1229 ILLIQDCPSLGSFTADCFPTKVSALGIDYLTIHKPFFELGLRRFTSLRELRLYGGSRDVVAFPPEDTK-----MALPASL 1303 (1388)
Q Consensus 1229 ~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~~sL 1303 (1388)
.+++.+|..+..-.... .-.+++.|+.|.+++|. .++++.-. ......|
T Consensus 350 ~l~~e~~~~~~d~tL~s----------------------ls~~C~~lr~lslshce----~itD~gi~~l~~~~c~~~~l 403 (483)
T KOG4341|consen 350 RLDLEECGLITDGTLAS----------------------LSRNCPRLRVLSLSHCE----LITDEGIRHLSSSSCSLEGL 403 (483)
T ss_pred hhcccccceehhhhHhh----------------------hccCCchhccCChhhhh----hhhhhhhhhhhhcccccccc
Confidence 66666654333211000 11234455555555432 11111000 0234567
Q ss_pred ceeecccCCCCCCcc--CCCCCCCcCcEeecCCCCCccCCC
Q 045318 1304 TFLWIDNFPNLLRLS--SIENLTSLQFLRFRNCPKLEYFPE 1342 (1388)
Q Consensus 1304 ~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~ 1342 (1388)
..|.+++||.++.-. .+..+++|+.+++.+|..++.=+.
T Consensus 404 ~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 404 EVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred ceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 777777777666654 666777888888888776665443
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.66 E-value=9.8e-08 Score=106.77 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=15.8
Q ss_pred CcCcEeecCCCCCc-cCCCCCCCCccceeeeccCcchH
Q 045318 1325 SLQFLRFRNCPKLE-YFPENGLPTSLLRLQIIACPLMK 1361 (1388)
Q Consensus 1325 ~L~~L~l~~c~~l~-~l~~~~l~~sL~~L~i~~c~~L~ 1361 (1388)
+|+.|.++.+.... .++...+|+++ .|++.+|-++.
T Consensus 178 SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~ 214 (426)
T PRK15386 178 SLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLS 214 (426)
T ss_pred cCcEEEecccccccccCccccccccc-EechhhhcccC
Confidence 55555554422111 12333344555 55555554443
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.63 E-value=4.7e-07 Score=97.17 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=93.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
+.+.|+|+.|+|||+|++++++.. ......+.|+.+... ..... .+.+.++ +.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~---~~~~~---------------------~~~~~~~-~~ 92 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKS---QYFSP---------------------AVLENLE-QQ 92 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHh---hhhhH---------------------HHHhhcc-cC
Confidence 578999999999999999999863 222334566665311 00000 1111122 23
Q ss_pred EEEEEeCCCCCC-hhhhhh-hcccccCC-CCCcEEEE-EcCC---------hhHHhhcCCCceEeCCCCChhhHHHHHHH
Q 045318 291 FLLVLDDMWNDN-YGDWTS-LRLPFVAG-ASGSKIIV-TTRN---------QSVASMMGSVSAYELKKLTDDDCRLVFTQ 357 (1388)
Q Consensus 291 ~LlVlDdv~~~~-~~~~~~-l~~~~~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (1388)
-+||+||+|... ..+|+. +...+... ..|..+|| |++. +.+.+.+....+++++++++++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 489999998742 235553 22222221 23555544 5543 45666666667899999999999999999
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 358 HSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
.++..+ ...+ +++..-|++++.|-.-++..+
T Consensus 173 ~a~~~~-l~l~---~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 173 NAYQRG-IELS---DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhccCCHHHHHHH
Confidence 886432 2222 367788999998876554443
No 37
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.62 E-value=1.4e-06 Score=102.71 Aligned_cols=177 Identities=20% Similarity=0.288 Sum_probs=103.7
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 181 AEVHGRDDDKKA---IVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 181 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
.++||.+..+.. +..++.. .....+.++|++|+||||+|+.+++. ....| +.++.......-
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~--------~~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ 76 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA--------GRLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKD 76 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc--------CCCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHH
Confidence 357787776554 6666643 33456788999999999999999985 22222 333222111111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEE--EcCChh--HH
Q 045318 258 TKAILRSICMHTDADDDLNSLQVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIV--TTRNQS--VA 332 (1388)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iiv--TtR~~~--v~ 332 (1388)
++++++. .... ..+++.+|++|++|.-.....+.+...+. .|..++| ||.+.. +.
T Consensus 77 ir~ii~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 77 LREVIEE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVN 136 (413)
T ss_pred HHHHHHH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhcc
Confidence 1222221 1111 14678899999998766555666554443 2444444 344432 11
Q ss_pred -hhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 333 -SMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 333 -~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
........+.+.++++++.++++.+.+..... ....-..+..+.|++.|+|.+..+..+.
T Consensus 137 ~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 137 PALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11222367999999999999999886422111 0001124567889999999987665443
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.61 E-value=6.6e-07 Score=106.76 Aligned_cols=214 Identities=12% Similarity=0.072 Sum_probs=125.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc---cccCC--ceEEEEeCCccCH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV---ESHFD--LKAWTCVSDDFDA 254 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~s~~~~~ 254 (1388)
+..+.|||+|+++|...|.....+. ....++.|+|++|+|||+.++.|.+.... +.... .+++|.+..-.+.
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs---gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp 830 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS---GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHP 830 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC---CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCH
Confidence 4578999999999999886533221 23367889999999999999999875211 11111 3466766666778
Q ss_pred HHHHHHHHHHhcCCCCC-CCcHHHHHHHHHhhcC---CceEEEEEeCCCCCChhhhhhhcccccC-CCCCcEEEE--EcC
Q 045318 255 IKVTKAILRSICMHTDA-DDDLNSLQVKLKDGLS---RKKFLLVLDDMWNDNYGDWTSLRLPFVA-GASGSKIIV--TTR 327 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~gs~iiv--TtR 327 (1388)
..++..|.+++...... .....+....+...+. +...+||||+|+.-....-+.+...+.. ...+++|+| +|.
T Consensus 831 ~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISN 910 (1164)
T PTZ00112 831 NAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecC
Confidence 88999999888544322 2223334444444432 2345899999954321111222212211 123555544 343
Q ss_pred Chh--------HHhhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhc
Q 045318 328 NQS--------VASMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLR 397 (1388)
Q Consensus 328 ~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~ 397 (1388)
..+ +...+.. ..+...|.+.++-.+++..++-.....-.+..++-+|+.++...|-.-.|+.++-.+..
T Consensus 911 dlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred chhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 221 2222221 24677999999999999998743222223333444555555555556677766655543
No 39
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.60 E-value=7.5e-07 Score=105.79 Aligned_cols=276 Identities=17% Similarity=0.202 Sum_probs=165.5
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC-ccCHHHHHHHHHHHhcCCC
Q 045318 191 KAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD-DFDAIKVTKAILRSICMHT 269 (1388)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 269 (1388)
.++++.|... .+.+++.|..++|.||||++.+.+.. . ..=..++|.+..+ +.++......++..++.-.
T Consensus 25 ~rL~~~L~~~-------~~~RL~li~APAGfGKttl~aq~~~~--~-~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~ 94 (894)
T COG2909 25 PRLLDRLRRA-------NDYRLILISAPAGFGKTTLLAQWREL--A-ADGAAVAWLSLDESDNDPARFLSYLIAALQQAT 94 (894)
T ss_pred HHHHHHHhcC-------CCceEEEEeCCCCCcHHHHHHHHHHh--c-CcccceeEeecCCccCCHHHHHHHHHHHHHHhC
Confidence 4555665543 56799999999999999999999751 1 1224689999865 4567788888888776432
Q ss_pred CC-------------CCcHHHHHHHHHhhcC--CceEEEEEeCCCCCChhhhh-hhcccccCCCCCcEEEEEcCChhHHh
Q 045318 270 DA-------------DDDLNSLQVKLKDGLS--RKKFLLVLDDMWNDNYGDWT-SLRLPFVAGASGSKIIVTTRNQSVAS 333 (1388)
Q Consensus 270 ~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~l~~~~~~~~~gs~iivTtR~~~v~~ 333 (1388)
+. ..+...+...+...+. .++..+||||..-....... .+...+.....+-..|||||...-..
T Consensus 95 p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~ 174 (894)
T COG2909 95 PTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLG 174 (894)
T ss_pred ccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCc
Confidence 21 1223334444444333 46789999998654322332 23333334456889999999864322
Q ss_pred ---hcCCCceEeCC----CCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHH---
Q 045318 334 ---MMGSVSAYELK----KLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPF--- 403 (1388)
Q Consensus 334 ---~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~--- 403 (1388)
..-.....++. .++.+|+-++|.... +. +-.+..++.+.+...|.+-|+..++=.+++..+.+
T Consensus 175 la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~--~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~ 247 (894)
T COG2909 175 LARLRLRDELLEIGSEELRFDTEEAAAFLNDRG--SL-----PLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSL 247 (894)
T ss_pred ccceeehhhHHhcChHhhcCChHHHHHHHHHcC--CC-----CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHh
Confidence 11111223333 489999999998763 11 11124578899999999999999988888443322
Q ss_pred ---------HHHHHHhhhccCCCCCCCchhHhhHHHHHHHHHHcCCcCCCCCcchHHHHHHHHHHHHHhCCCCccc--cC
Q 045318 404 ---------DWRNVLNNKIWNLPEEGGDIMRALKNDVVLVWMAEGLLEPDTSEMKMEELGRSYFRELHSRSFFQKS--YM 472 (1388)
Q Consensus 404 ---------~w~~~~~~~~~~~~~~~~~~~~~l~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~--~~ 472 (1388)
-|....+.....++ +.+++-+++.-+..-|-.+-....+-++-|...+++|..+++|-.. ..
T Consensus 248 ~~LsG~~~~l~dYL~eeVld~Lp-------~~l~~FLl~~svl~~f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~ 320 (894)
T COG2909 248 RGLSGAASHLSDYLVEEVLDRLP-------PELRDFLLQTSVLSRFNDELCNALTGEENGQAMLEELERRGLFLQRLDDE 320 (894)
T ss_pred hhccchHHHHHHHHHHHHHhcCC-------HHHHHHHHHHHhHHHhhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCC
Confidence 12222222112222 2222223322222222111001122234467789999999988755 56
Q ss_pred CCcccccchHHHHHHHhc
Q 045318 473 DSRFIMHDLITDLAQWAA 490 (1388)
Q Consensus 473 ~~~~~mHdli~d~a~~~~ 490 (1388)
+..|+.|.++.||-+.-.
T Consensus 321 ~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 321 GQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred CceeehhHHHHHHHHhhh
Confidence 779999999999987543
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.60 E-value=6.9e-07 Score=97.04 Aligned_cols=172 Identities=24% Similarity=0.350 Sum_probs=104.2
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 178 VNEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
+.+.+++|.+..+.+.++ . +.+.-...||++|+||||||+.+... ....| ..++...+-.+-
T Consensus 27 vGQ~HLlg~~~~lrr~v~---~--------~~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f-----~~~sAv~~gvkd 88 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---A--------GHLHSMILWGPPGTGKTTLARLIAGT--TNAAF-----EALSAVTSGVKD 88 (436)
T ss_pred cChHhhhCCCchHHHHHh---c--------CCCceeEEECCCCCCHHHHHHHHHHh--hCCce-----EEeccccccHHH
Confidence 445566666655555543 2 45566789999999999999999985 44444 334443333222
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEE--EcCChhHH---
Q 045318 258 TKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIV--TTRNQSVA--- 332 (1388)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iiv--TtR~~~v~--- 332 (1388)
+++++++.. +....|+|.+|++|.|..-+..+.+.+.... ..|.-|+| ||-++...
T Consensus 89 lr~i~e~a~----------------~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 89 LREIIEEAR----------------KNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNP 149 (436)
T ss_pred HHHHHHHHH----------------HHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecH
Confidence 333332221 2233489999999999876655666654333 35666655 56554321
Q ss_pred hhcCCCceEeCCCCChhhHHHHHHHcccCCCC-CC-CCc-hHHHHHHHHHHHcCCCh
Q 045318 333 SMMGSVSAYELKKLTDDDCRLVFTQHSLGTKD-FS-NHQ-HLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 333 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~-~~-~~~-~~~~~~~~i~~~c~g~P 386 (1388)
.......++.+++|+.++-.+++.+.+..... .. ... --++...-+++.++|--
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 12234478999999999999999884321111 11 001 11346677889998854
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=6e-10 Score=119.87 Aligned_cols=158 Identities=16% Similarity=0.181 Sum_probs=96.5
Q ss_pred cccceEeecCCCCccccCCc---CCcCccceEEeccCCCCcccCCC---CCCCccceeeccccc-CCcchhcccccccCc
Q 045318 1202 LKLTMLDINGCEKLMALPNN---LHQFSIEILLIQDCPSLGSFTAD---CFPTKVSALGIDYLT-IHKPFFELGLRRFTS 1274 (1388)
Q Consensus 1202 ~~L~~L~l~~~~~L~~l~~~---~~~~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~~~-l~~~~~~~~l~~l~~ 1274 (1388)
+-+.++++.+|..++...-. -....|+.|+.++|.+++..+.. .-..+|++|.++.|. +++.-....-.+.+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 34445555555554433210 11155666666666665543322 123666777777766 333322333456788
Q ss_pred cceeEecCCCCCccc-cCcccccccCCCccceeecccCCCCCCcc------CCCCCCCcCcEeecCCCCCcc--CCCCCC
Q 045318 1275 LRELRLYGGSRDVVA-FPPEDTKMALPASLTFLWIDNFPNLLRLS------SIENLTSLQFLRFRNCPKLEY--FPENGL 1345 (1388)
Q Consensus 1275 L~~L~l~~~~~~~~~-~~~~~~~~~~~~sL~~L~l~~~~~l~~l~------~~~~l~~L~~L~l~~c~~l~~--l~~~~l 1345 (1388)
|+.+++.+|...... +..- ....+.|++|.+++|..++... .-..+..|+.+.+.+||.++. +-....
T Consensus 348 Le~l~~e~~~~~~d~tL~sl---s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASL---SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred hhhhcccccceehhhhHhhh---ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 899988886433222 2211 2466899999999999888872 445678899999999998764 222223
Q ss_pred CCccceeeeccCcchHH
Q 045318 1346 PTSLLRLQIIACPLMKE 1362 (1388)
Q Consensus 1346 ~~sL~~L~i~~c~~L~~ 1362 (1388)
-++|+.+++.+|....+
T Consensus 425 c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTK 441 (483)
T ss_pred Ccccceeeeechhhhhh
Confidence 46899999999986544
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.49 E-value=5.3e-07 Score=101.01 Aligned_cols=136 Identities=23% Similarity=0.456 Sum_probs=80.2
Q ss_pred CCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEE
Q 045318 999 PCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLL 1078 (1388)
Q Consensus 999 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L 1078 (1388)
+.+++.|++++| .+..+|. -+++|+.|.+++|..++.+|..+ ..+|+.|.+++|..+. .+|++|+.|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~-----sLP~sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEIS-----GLPESVRSL 117 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccc-----ccccccceE
Confidence 467889999988 5666672 25578888888888888887644 3568888888876665 345667777
Q ss_pred EeecCcCcccchhhhhhccCCCCCCCCCCCCccccccceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCC
Q 045318 1079 HIQSCHDLRTLIDEDQISGMKKDGDIPSGSSSYTCLLERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGA 1158 (1388)
Q Consensus 1079 ~l~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~ 1158 (1388)
++... .+.. .+.+|.+ |+.|.+.++...........+|.+|+.|.+.+|..+. +| ..
T Consensus 118 ~L~~n-~~~~------------L~~LPss-------Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP--~~ 174 (426)
T PRK15386 118 EIKGS-ATDS------------IKNVPNG-------LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LP--EK 174 (426)
T ss_pred EeCCC-CCcc------------cccCcch-------HhheeccccccccccccccccCCcccEEEecCCCccc-Cc--cc
Confidence 76532 2111 1133332 6666664432221111112356667777777766443 21 12
Q ss_pred CccccccEEecc
Q 045318 1159 LPKVLKDLYIYE 1170 (1388)
Q Consensus 1159 ~~~~L~~L~l~~ 1170 (1388)
.+.+|+.|+++.
T Consensus 175 LP~SLk~L~ls~ 186 (426)
T PRK15386 175 LPESLQSITLHI 186 (426)
T ss_pred ccccCcEEEecc
Confidence 335666666655
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.44 E-value=1.5e-07 Score=111.79 Aligned_cols=102 Identities=38% Similarity=0.471 Sum_probs=89.2
Q ss_pred hccCceeeEEEeCCccccccccccccCc-ccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCe
Q 045318 561 LLKLQCLRVLCLREYNICKISNTIGDLK-HLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRH 639 (1388)
Q Consensus 561 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 639 (1388)
+..++.++.|++.+|.++.+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3556789999999999999999888885 999999999999999999999999999999997 67788888889999999
Q ss_pred eecCCCCCcccCcCCCCCCCCCCCC
Q 045318 640 LNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 640 L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
|++++|. +..+|..++.+..|++|
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l 214 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEEL 214 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhh
Confidence 9999998 67778766666667766
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.44 E-value=1.3e-07 Score=94.67 Aligned_cols=130 Identities=28% Similarity=0.310 Sum_probs=51.0
Q ss_pred cccCCCCCceeeeecccccccccchHHHHhhc-cCceeeEEEeCCccccccccccccCcccceeeccCccccccccch-h
Q 045318 531 AISDCKHLRTFVSVQWTFSRHFLSDSVVHMLL-KLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESV-N 608 (1388)
Q Consensus 531 ~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~ 608 (1388)
.+.+..++|.| ++.++.++. ...+. .+.+|++|||++|.|+.++ .+..+.+|++|++++|.|+.+++.+ .
T Consensus 14 ~~~n~~~~~~L-----~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 14 QYNNPVKLREL-----NLRGNQIST--IENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred ccccccccccc-----ccccccccc--ccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHH
Confidence 34455566777 355555543 23343 5778999999999999885 5788999999999999999987656 4
Q ss_pred cccccceeecCCCcchhhcc--hhhcccCCCCeeecCCCCCcccCcC----CCCCCCCCCCCCceEec
Q 045318 609 TLYNLHTLLLESCSRLKKLC--ADMGNLIKLRHLNNYNVPLLEGMPL----RIGHLSCLQTLPYFVVG 670 (1388)
Q Consensus 609 ~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~ 670 (1388)
.+++|++|++++|.. ..+. ..+..+++|++|++.+|+... .+. -+..+++|+.|+...+.
T Consensus 86 ~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 86 NLPNLQELYLSNNKI-SDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp H-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETT
T ss_pred hCCcCCEEECcCCcC-CChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEcc
Confidence 689999999998743 3321 356788999999999998432 231 35667778877554443
No 45
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=8.8e-06 Score=92.44 Aligned_cols=180 Identities=13% Similarity=0.180 Sum_probs=116.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCc----cccccCCceEEEEe-CCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDH----MVESHFDLKAWTCV-SDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-s~~~~~~ 255 (1388)
.+++|-+..++.+..++..+ .-.....++|+.|+||||+|+.+++.. ....|.|...|... +....++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~ 76 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVD 76 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHH
Confidence 35789999999999998654 233577899999999999999998741 23456666555442 2223333
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHH-hh
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVA-SM 334 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~ 334 (1388)
+ .+++.+.+... -..+++-++|+|+++.-+...+..+...+.....++.+|++|.+.+.. ..
T Consensus 77 ~-ir~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 77 D-IRNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred H-HHHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 3 22222222111 123455678888886666678888888887767789988888665422 11
Q ss_pred -cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 335 -MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 335 -~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
......+++.++++++....+.+.. .. .. .+.++.++..++|.|..+...
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~-~~----~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKY-ND----IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHh-cC----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 1223689999999999877776543 11 11 234678899999998665433
No 46
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.39 E-value=5.4e-07 Score=88.10 Aligned_cols=118 Identities=20% Similarity=0.209 Sum_probs=80.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccc---ccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhh
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVE---SHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDG 285 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 285 (1388)
+-+++.|+|.+|+|||++++.+.++.... ..-..++|+.+....+...+...|+.+++.......+..++...+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 34789999999999999999999863110 002456799988888999999999999988766656677777777777
Q ss_pred cCCc-eEEEEEeCCCCC-ChhhhhhhcccccCCCCCcEEEEEcCC
Q 045318 286 LSRK-KFLLVLDDMWND-NYGDWTSLRLPFVAGASGSKIIVTTRN 328 (1388)
Q Consensus 286 l~~k-~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~iivTtR~ 328 (1388)
+... ..+||+||++.- ....++.+.... + ..+.+||+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 7654 459999999654 434445554322 2 567778877765
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.38 E-value=8.5e-08 Score=95.88 Aligned_cols=82 Identities=32% Similarity=0.348 Sum_probs=29.4
Q ss_pred ccCceeeEEEeCCccccccccccc-cCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhh-cccCCCCe
Q 045318 562 LKLQCLRVLCLREYNICKISNTIG-DLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADM-GNLIKLRH 639 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~~ 639 (1388)
.+...+|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..+++|++|++++|. +..++..+ ..+++|++
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 34456899999999999884 465 6899999999999999996 58889999999999984 55665555 46999999
Q ss_pred eecCCCC
Q 045318 640 LNNYNVP 646 (1388)
Q Consensus 640 L~l~~~~ 646 (1388)
|++++|.
T Consensus 93 L~L~~N~ 99 (175)
T PF14580_consen 93 LYLSNNK 99 (175)
T ss_dssp EE-TTS-
T ss_pred EECcCCc
Confidence 9999998
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.37 E-value=3.6e-06 Score=91.34 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=98.2
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHh
Q 045318 186 RDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSI 265 (1388)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (1388)
.+..++++.+++.. .....|.|+|+.|+|||++|+.+++... ......+++.++.-. ...
T Consensus 22 ~~~~~~~l~~~~~~--------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~------~~~---- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG--------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELA------QAD---- 81 (226)
T ss_pred cHHHHHHHHHHHhc--------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHH------HhH----
Confidence 44566666666532 2346788999999999999999998632 223344555433221 100
Q ss_pred cCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChh-hh-hhhcccccC-CCCCcEEEEEcCChh---------HHh
Q 045318 266 CMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYG-DW-TSLRLPFVA-GASGSKIIVTTRNQS---------VAS 333 (1388)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~-~~l~~~~~~-~~~gs~iivTtR~~~---------v~~ 333 (1388)
. .+...+.+ .-+||+||++.-... .| +.+...+.. ...+.+||+||+... +..
T Consensus 82 ----------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~ 146 (226)
T TIGR03420 82 ----------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRT 146 (226)
T ss_pred ----------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHH
Confidence 0 01111222 238999999654322 23 333332221 123457899887532 222
Q ss_pred hcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 334 MMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 334 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
.+.....+++.++++++...++...+-..+ .... .+..+.+++.+.|.|..+..+.
T Consensus 147 r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~---~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 147 RLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLP---DEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 333345799999999999998887542211 1122 3566788888999987766553
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=6e-06 Score=84.08 Aligned_cols=175 Identities=22% Similarity=0.254 Sum_probs=91.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+|||-+.-++.+.-++....... +.+.-+.+||++|+||||||.-+++. ....|. +.+.. ...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~---~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg~-~i~------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRG---EALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSGP-AIE------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTT---S---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEECC-C---------
T ss_pred HHccCcHHHHhhhHHHHHHHHhcC---CCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccch-hhh-------
Confidence 579999988887655443221111 45677889999999999999999986 334442 22211 110
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC--------C-----------CCcE
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG--------A-----------SGSK 321 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~--------~-----------~gs~ 321 (1388)
...++...+.. + +++-+|.+|++..-+....+.+..++-++ + +=+-
T Consensus 88 -------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 -------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred -------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 01111111211 2 23446777888665433333333222221 1 2244
Q ss_pred EEEEcCChhHHhhcCCC--ceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 045318 322 IIVTTRNQSVASMMGSV--SAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAK 390 (1388)
Q Consensus 322 iivTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 390 (1388)
|=.|||...+...+... -+.+++..+.+|-.++..+.+--- .-+-.++.+.+|++++.|-|--+.
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAn 219 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIAN 219 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHH
Confidence 56788876655544332 245899999999999998876211 122235778999999999995443
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.33 E-value=1.8e-08 Score=112.68 Aligned_cols=168 Identities=24% Similarity=0.280 Sum_probs=105.7
Q ss_pred cccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhh
Q 045318 547 TFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKK 626 (1388)
Q Consensus 547 ~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~ 626 (1388)
+++.|.+. .+|..+..+..|..|.|..|.+..+|..+++|..|.||+|+.|++..+|..++.|+ |++|-+++| .++.
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~ 157 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTS 157 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-cccc
Confidence 34444443 35555666667777788888888888888888888888888888888888777664 778888775 5677
Q ss_pred cchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhh
Q 045318 627 LCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARD 706 (1388)
Q Consensus 627 lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~ 706 (1388)
+|..++.+..|.+|+.+.|. +..+|..++.|.+|+.|...... -...+.++..|.-.+ ..+..+ .....+
T Consensus 158 lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~--l~~lp~El~~LpLi~-----lDfScN--kis~iP 227 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNH--LEDLPEELCSLPLIR-----LDFSCN--KISYLP 227 (722)
T ss_pred CCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhh--hhhCCHHHhCCceee-----eecccC--ceeecc
Confidence 78888877888888888877 66677777777777766322111 011223333222111 111111 112234
Q ss_pred hhcCCCCCCCeEEEEeeCCCC
Q 045318 707 AELNGKRNLDVLFLEWTNSSG 727 (1388)
Q Consensus 707 ~~l~~~~~L~~L~L~~~~~~~ 727 (1388)
..+.+++.|++|.|.+|.+..
T Consensus 228 v~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 228 VDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred hhhhhhhhheeeeeccCCCCC
Confidence 556666777777777666554
No 51
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.32 E-value=7e-07 Score=95.53 Aligned_cols=90 Identities=19% Similarity=0.095 Sum_probs=62.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc--cCHHHHHHHHHHHhcCCCCCCCcHH------HHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD--FDAIKVTKAILRSICMHTDADDDLN------SLQV 280 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 280 (1388)
....++|+|++|+|||||++.+|++.... +|+..+|+++++. +++.++++.+...+-....+..... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999985444 8999999998777 7899999998443322221111111 1112
Q ss_pred HHHhh-cCCceEEEEEeCCC
Q 045318 281 KLKDG-LSRKKFLLVLDDMW 299 (1388)
Q Consensus 281 ~l~~~-l~~k~~LlVlDdv~ 299 (1388)
..... -.++++++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22221 24899999999993
No 52
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=1.9e-06 Score=83.16 Aligned_cols=119 Identities=24% Similarity=0.232 Sum_probs=78.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
+++.|.|+.|+||||++++++.+.. ....+++++..+........ .+ ..+.+.+....++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCC
Confidence 6899999999999999999997632 22445666555443211000 00 2223333344477
Q ss_pred EEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhhc------CCCceEeCCCCChhhH
Q 045318 291 FLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMM------GSVSAYELKKLTDDDC 351 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 351 (1388)
.+|++|+|... .+|......+.+..+..+|++|+........- +....+++.||+-.|.
T Consensus 63 ~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999554 57877777777666678999999887665331 1224688999987763
No 53
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=6.7e-07 Score=73.12 Aligned_cols=57 Identities=28% Similarity=0.441 Sum_probs=44.6
Q ss_pred eeeEEEeCCccccccc-cccccCcccceeeccCccccccc-cchhcccccceeecCCCc
Q 045318 566 CLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCS 622 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~ 622 (1388)
+|++|++++|.++.+| ..|..+++|++|++++|.+..+| ..|..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 5778888888888887 46778888888888888888774 467888888888887764
No 54
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=1.4e-07 Score=96.86 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=31.7
Q ss_pred CCCccEEeeecCCCC--CCCCCCCCCCCcceeeccCCcCcEEe
Q 045318 770 FSNLELLRFENCAMC--TSLPSIGQLPALKHLSIIGMALVKSV 810 (1388)
Q Consensus 770 l~~L~~L~L~~~~~~--~~l~~l~~l~~L~~L~L~~~~~~~~~ 810 (1388)
+-+|..|++++|++. +.+..+|++|+|+++.|.+|+....+
T Consensus 373 LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 373 LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 567888888888763 35568999999999999999765443
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2e-05 Score=91.21 Aligned_cols=180 Identities=12% Similarity=0.091 Sum_probs=107.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC-------------------C
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF-------------------D 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-------------------~ 241 (1388)
.+++|.+.-++.+...+... .-...+.++|+.|+||||+|+.+++.......+ .
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~ 88 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCL 88 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 46899999999998888653 223567899999999999999998752211110 0
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCc
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGS 320 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs 320 (1388)
...++..+....+ .+..++...+... ..+++-++|+|++..-....++.+...+.......
T Consensus 89 d~~~~~~~~~~~v------------------~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~ 150 (363)
T PRK14961 89 DLIEIDAASRTKV------------------EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHI 150 (363)
T ss_pred ceEEecccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 1111111111111 1111111111111 12455699999997766556777766665555566
Q ss_pred EEEEEcCCh-hHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 321 KIIVTTRNQ-SVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 321 ~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
++|++|.+. .+... ......+++.+++.++..+.+...+...+ ... -.+.+..|++.++|.|-.+
T Consensus 151 ~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i---~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 151 KFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDT---DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred EEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHH
Confidence 777766543 33322 12236799999999999888777553221 111 1356788999999987543
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=2.2e-05 Score=94.09 Aligned_cols=181 Identities=12% Similarity=0.120 Sum_probs=112.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-------------------CC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESH-------------------FD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~ 241 (1388)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+....+.. |.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-------L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-------LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc
Confidence 468999999999999986532 2356679999999999999988875221111 11
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhhhhhcccccCCC
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD----GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGA 317 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~ 317 (1388)
..+++..+.. ..++++.+.+.. -..++.-++|||+++.-+...|..+...+....
T Consensus 89 DviEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP 147 (830)
T PRK07003 89 DYVEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPP 147 (830)
T ss_pred eEEEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcC
Confidence 1222222111 122222222221 123455689999998777667777776665545
Q ss_pred CCcEEEEEcCChh-HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHH
Q 045318 318 SGSKIIVTTRNQS-VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTLG 393 (1388)
Q Consensus 318 ~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~ 393 (1388)
...++|+||++.. +... ......+.++.++.++..+.+.+.+-. +.... -.+..+.|++.++|.. -|+..+-
T Consensus 148 ~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~-EgI~i---d~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 148 PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE-ERIAF---EPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred CCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6778888777643 2211 122267999999999999888876522 22211 1356788999998854 5555433
No 57
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=4.2e-06 Score=84.22 Aligned_cols=125 Identities=17% Similarity=0.105 Sum_probs=72.4
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHH
Q 045318 184 HGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILR 263 (1388)
Q Consensus 184 vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~ 263 (1388)
+|++..++.+...+... ..+.+.|+|++|+||||+|+.+++... ..-..++++...+..........+..
T Consensus 1 ~~~~~~~~~i~~~~~~~--------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~ 70 (151)
T cd00009 1 VGQEEAIEALREALELP--------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGH 70 (151)
T ss_pred CchHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhh
Confidence 47888889998887542 236788999999999999999998632 11234556655444332222111110
Q ss_pred HhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh---hhhhhhcccccCC---CCCcEEEEEcCChh
Q 045318 264 SICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY---GDWTSLRLPFVAG---ASGSKIIVTTRNQS 330 (1388)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~l~~~~~~~---~~gs~iivTtR~~~ 330 (1388)
. ............++.++|+||++.... ..+.......... ..+.+||+||....
T Consensus 71 ~------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 F------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred h------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 001111222345678999999975321 2222222222221 36788998887653
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.29 E-value=1.2e-07 Score=97.30 Aligned_cols=81 Identities=25% Similarity=0.160 Sum_probs=55.4
Q ss_pred CceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecC
Q 045318 564 LQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNY 643 (1388)
Q Consensus 564 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1388)
-+.|+.|||++|.|+.+.+++.-++.+|.|++|+|.|..+.. +..|++|+.|||++| .+..+...-.+|.|.+.|.+.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehh
Confidence 355777777777777777777777777777777777776644 677777777777776 344443334456666666666
Q ss_pred CCC
Q 045318 644 NVP 646 (1388)
Q Consensus 644 ~~~ 646 (1388)
+|.
T Consensus 361 ~N~ 363 (490)
T KOG1259|consen 361 QNK 363 (490)
T ss_pred hhh
Confidence 664
No 59
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3.4e-06 Score=100.32 Aligned_cols=203 Identities=16% Similarity=0.136 Sum_probs=115.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|-+.-++.|..++... .-...+.++|++|+||||+|+.+++.....+.+...+|.|.+... +......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCC
Confidence 46899999888888888654 223567899999999999999998863222222223333321100 0000000
Q ss_pred HHHHhcCC-CCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcC-ChhHHhhc-C
Q 045318 261 ILRSICMH-TDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTR-NQSVASMM-G 336 (1388)
Q Consensus 261 i~~~l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR-~~~v~~~~-~ 336 (1388)
.+..+... ....+++.++...+.. -..+++-++|+|+++......+..+...+......+.+|++|. ...+...+ .
T Consensus 86 dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S 165 (504)
T PRK14963 86 DVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS 165 (504)
T ss_pred ceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc
Confidence 00000100 0011112222222221 1235666899999987766677777777765545556555554 33333222 2
Q ss_pred CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHHh
Q 045318 337 SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTLGGL 395 (1388)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~~ 395 (1388)
....+++.++++++..+.+.+.+-..+. .. -.+....|++.++|.+- |+..+-.+
T Consensus 166 Rc~~~~f~~ls~~el~~~L~~i~~~egi-~i---~~~Al~~ia~~s~GdlR~aln~Lekl 221 (504)
T PRK14963 166 RTQHFRFRRLTEEEIAGKLRRLLEAEGR-EA---EPEALQLVARLADGAMRDAESLLERL 221 (504)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2357999999999999998887633221 11 13567889999999874 44433333
No 60
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.26 E-value=1.2e-05 Score=98.60 Aligned_cols=203 Identities=21% Similarity=0.197 Sum_probs=118.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC---CceEEEEeCCc---cCH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF---DLKAWTCVSDD---FDA 254 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~---~~~ 254 (1388)
+.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.......+ ...-|+.+... .+.
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~ 225 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDP 225 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCH
Confidence 3588999999988877643 233568999999999999999998764333322 12345555321 122
Q ss_pred HHHHHHH---------------HHHhcCCC----------------CCCCcH-HHHHHHHHhhcCCceEEEEEeCCCCCC
Q 045318 255 IKVTKAI---------------LRSICMHT----------------DADDDL-NSLQVKLKDGLSRKKFLLVLDDMWNDN 302 (1388)
Q Consensus 255 ~~~~~~i---------------~~~l~~~~----------------~~~~~~-~~~~~~l~~~l~~k~~LlVlDdv~~~~ 302 (1388)
..+...+ +...+... ++...+ ...+..+.+.++++++.++-|+.|..+
T Consensus 226 ~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~ 305 (615)
T TIGR02903 226 REVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDD 305 (615)
T ss_pred HHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCC
Confidence 2221111 11111100 011111 235677888888999999988888776
Q ss_pred hhhhhhhcccccCCCCCcEEEE--EcCChhH-Hhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHH
Q 045318 303 YGDWTSLRLPFVAGASGSKIIV--TTRNQSV-ASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEI 378 (1388)
Q Consensus 303 ~~~~~~l~~~~~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i 378 (1388)
...|+.+...+....+...|+| ||++... ...+ .....+.+.+++.++.++++.+.+-... .... .++.+.|
T Consensus 306 ~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls---~eal~~L 381 (615)
T TIGR02903 306 PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLA---AGVEELI 381 (615)
T ss_pred cccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHH
Confidence 6778888766665555555555 6665432 1111 1224678999999999999998753211 1111 2444555
Q ss_pred HHHcCCChHHHHHHHHh
Q 045318 379 LKKCNGLPLAAKTLGGL 395 (1388)
Q Consensus 379 ~~~c~g~Plai~~~~~~ 395 (1388)
.+++..-+-|+..++.+
T Consensus 382 ~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 382 ARYTIEGRKAVNILADV 398 (615)
T ss_pred HHCCCcHHHHHHHHHHH
Confidence 55554445555544433
No 61
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.26 E-value=6.7e-08 Score=108.25 Aligned_cols=99 Identities=27% Similarity=0.282 Sum_probs=87.5
Q ss_pred cCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 563 KLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
.+..-...||+.|.+..+|..++.+..|..|.|..|.|..+|..+++|..|.+|||+.| .+..+|..++.|+ |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 34445668999999999999999999999999999999999999999999999999997 5778899998887 899999
Q ss_pred CCCCCcccCcCCCCCCCCCCCC
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
++|+ ++.+|.+|+.+..|..|
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHL 171 (722)
T ss_pred ecCc-cccCCcccccchhHHHh
Confidence 9988 88899999966666666
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=3.8e-07 Score=99.36 Aligned_cols=62 Identities=23% Similarity=0.153 Sum_probs=37.5
Q ss_pred ccCcccceeeccCcccccccc--chhcccccceeecCCCcchh--hcchhhcccCCCCeeecCCCC
Q 045318 585 GDLKHLRHLDLSETLIETLPE--SVNTLYNLHTLLLESCSRLK--KLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 585 ~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
.++..||...|.++.+...+. -...+++++.|||++|-... .+..-...|++|+.|+++.|.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc
Confidence 456666666666666665553 45566777777777653221 222334567777777777776
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.25 E-value=1.6e-05 Score=92.43 Aligned_cols=196 Identities=16% Similarity=0.100 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-ceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD-LKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|++..++.+..++.. +..+.+.++|+.|+||||+|+.+.+... ...+. ..+.+++++-.+ ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~--~~~~ 83 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS--------PNLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFD--QGKK 83 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC--------CCCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhh--cchh
Confidence 4688999999999888754 2334578999999999999999987521 11121 123333332110 0000
Q ss_pred HH------HHHhcCC-CCCCCcHHHHHHHHH---hhc--CCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcC
Q 045318 260 AI------LRSICMH-TDADDDLNSLQVKLK---DGL--SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTR 327 (1388)
Q Consensus 260 ~i------~~~l~~~-~~~~~~~~~~~~~l~---~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR 327 (1388)
.+ ...++.. .......+.....+. ... .+.+-+||+||+..-....+..+...+......+++|+||.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 84 YLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred hhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 00 0000000 000011122222121 111 23455899999965543344445544433344567877775
Q ss_pred Ch-hHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 328 NQ-SVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 328 ~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
.. .+.... .....+++.+++.++....+...+...+ ...+ .+..+.+++.++|.+-.+..
T Consensus 164 ~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~~~~---~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 164 QPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEG-VDYD---DDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred ChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 43 222211 2235788999999998888887653222 1122 36678899999997644433
No 64
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.5e-05 Score=92.63 Aligned_cols=192 Identities=14% Similarity=0.141 Sum_probs=110.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.. |+... ....-..-+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-------l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~~-pCg~C~sC~~ 80 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-------LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTST-PCEVCATCKA 80 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCCC-CCccCHHHHH
Confidence 468999999999999987542 236778999999999999999987521111 11000 0000000000
Q ss_pred HHHH-----hcCCCCCCCcHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh-h
Q 045318 261 ILRS-----ICMHTDADDDLNSLQVKLKD----GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ-S 330 (1388)
Q Consensus 261 i~~~-----l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~-~ 330 (1388)
|... +.........++++...+.. -..+++-++|+|+|..-+...+..+...+.....+.++|++|.+. .
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 0000 00000011122222222211 123566789999997766566677766665544566777777653 2
Q ss_pred HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 045318 331 VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAK 390 (1388)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 390 (1388)
+... ......+++++++.++..+.+.+.+-..+ ... -.+....|++.++|-+-.+.
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-I~i---d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-IAA---DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2211 23336799999999999888877653222 111 13567889999999774443
No 65
>PRK04195 replication factor C large subunit; Provisional
Probab=98.24 E-value=4.4e-05 Score=92.05 Aligned_cols=180 Identities=18% Similarity=0.164 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|.++.++++.+|+.....+ ...+.+.|+|++|+||||+|++++++.. |+ .+-+..+...+. +.+..
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g----~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~-~~i~~ 83 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG----KPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTA-DVIER 83 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC----CCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccH-HHHHH
Confidence 46999999999999998653211 2257889999999999999999998631 22 223344433222 22333
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh----hhhhhhcccccCCCCCcEEEEEcCChh-HHh--
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY----GDWTSLRLPFVAGASGSKIIVTTRNQS-VAS-- 333 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~-- 333 (1388)
++....... .....++-+||+|+++.-.. ..+..+...+.. .+..||+|+.+.. ...
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 333221110 01113677999999966432 234455444432 3345666664421 111
Q ss_pred hcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 045318 334 MMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAK 390 (1388)
Q Consensus 334 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 390 (1388)
.......+++.+++.++....+.+.+...+ ...+ .++...|++.++|-.-.+.
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~eg-i~i~---~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEG-IECD---DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHH
Confidence 112235789999999998888777653322 2222 3567889999999654443
No 66
>PTZ00202 tuzin; Provisional
Probab=98.24 E-value=4.2e-05 Score=85.08 Aligned_cols=169 Identities=11% Similarity=0.108 Sum_probs=104.8
Q ss_pred ccccCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 176 SLVNEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 176 ~~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
.+.+.+.|+||+++..++...|...+. ...+++.|.|++|+|||||++.+..... + .+++. ...+..
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~-----~~privvLtG~~G~GKTTLlR~~~~~l~----~--~qL~v--Nprg~e 323 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT-----AHPRIVVFTGFRGCGKSSLCRSAVRKEG----M--PAVFV--DVRGTE 323 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC-----CCceEEEEECCCCCCHHHHHHHHHhcCC----c--eEEEE--CCCCHH
Confidence 445667899999999999998865332 3346999999999999999999996522 1 12222 222779
Q ss_pred HHHHHHHHHhcCCCCCC--CcHHHHHHHHHhhc-C-CceEEEEEeCCCCCCh-hhhhhhcccccCCCCCcEEEEEcCChh
Q 045318 256 KVTKAILRSICMHTDAD--DDLNSLQVKLKDGL-S-RKKFLLVLDDMWNDNY-GDWTSLRLPFVAGASGSKIIVTTRNQS 330 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~--~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~-~~~~~l~~~~~~~~~gs~iivTtR~~~ 330 (1388)
++++.++.+++...... +-.+.+.+.+.+.- . +++.+||+-==...+. .-+.+.. .+.....-|.|++---.+.
T Consensus 324 ElLr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evples 402 (550)
T PTZ00202 324 DTLRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLES 402 (550)
T ss_pred HHHHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhh
Confidence 99999999999743322 11234444443322 3 7788888742211111 1122221 2334456678887654443
Q ss_pred HHhhc---CCCceEeCCCCChhhHHHHHHHc
Q 045318 331 VASMM---GSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 331 v~~~~---~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
..-.. ..-..|.+..++.++|.+.-...
T Consensus 403 lt~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 403 LTIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred cchhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 32211 11246899999999998866554
No 67
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.23 E-value=1.7e-06 Score=90.74 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE 237 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 237 (1388)
.|+||+++++++...+... .. ...+++.|+|++|+|||+|.++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~-~~----~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA-QS----GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT-SS---------EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH-Hc----CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999522 11 456899999999999999999999874333
No 68
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.23 E-value=2.4e-06 Score=94.71 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=62.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc--CHHHHHHHHHHHhcCCCCCCCcHHH------HHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF--DAIKVTKAILRSICMHTDADDDLNS------LQV 280 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~------~~~ 280 (1388)
+-...+|+|++|+||||||++||++.... +|+..+||.+++.. ++.++++.|...+-....+.....+ ...
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 34677899999999999999999985544 89999999999887 7778888876433322222111111 111
Q ss_pred HHHhh-cCCceEEEEEeCCC
Q 045318 281 KLKDG-LSRKKFLLVLDDMW 299 (1388)
Q Consensus 281 ~l~~~-l~~k~~LlVlDdv~ 299 (1388)
.-... -.+++++|++|++.
T Consensus 247 ~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred HHHHHHHcCCCEEEEEEChH
Confidence 11111 26899999999993
No 69
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.5e-07 Score=98.78 Aligned_cols=148 Identities=22% Similarity=0.229 Sum_probs=86.6
Q ss_pred CcceEEEeeccccccccccccccCCCCCceeeeecccccccccchH--HHHhhccCceeeEEEeCCccccccccc--ccc
Q 045318 511 KNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDS--VVHMLLKLQCLRVLCLREYNICKISNT--IGD 586 (1388)
Q Consensus 511 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~--~~~~~~~l~~Lr~L~L~~~~i~~lp~~--i~~ 586 (1388)
+++|.+++..........-.....|+++|.| +++.|.+... +.+-...+++|+.|+|+.|.+....++ -..
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~L-----dLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDL-----DLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceee-----cchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 3455555554432211100234567778877 4555544322 223336788888888888877654422 246
Q ss_pred CcccceeeccCcccc--ccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCc--CCCCCCCCCC
Q 045318 587 LKHLRHLDLSETLIE--TLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMP--LRIGHLSCLQ 662 (1388)
Q Consensus 587 l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~ 662 (1388)
+.+|+.|.|+.|.+. .+-.-.-..++|+.|+|.+|..+..-......+..|+.|++++|++. ..+ ..++.++.|.
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 778888888888776 22333445678888888887544333344556777888888888743 233 3355555555
Q ss_pred CC
Q 045318 663 TL 664 (1388)
Q Consensus 663 ~L 664 (1388)
.|
T Consensus 275 ~L 276 (505)
T KOG3207|consen 275 QL 276 (505)
T ss_pred hh
Confidence 55
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.5e-05 Score=95.65 Aligned_cols=183 Identities=17% Similarity=0.151 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-------------------CC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESH-------------------FD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~ 241 (1388)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+++...-... |.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-------l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 88 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-------LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFV 88 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-------CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCc
Confidence 468999999999998886532 2245579999999999999999976321111 11
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCc
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGS 320 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs 320 (1388)
..+++.......+ +++.++...+.. -..+++-++|+|++..-....+..+...+-......
T Consensus 89 DviEidAas~~kV------------------DdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~v 150 (944)
T PRK14949 89 DLIEVDAASRTKV------------------DDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHV 150 (944)
T ss_pred eEEEeccccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCe
Confidence 1122211111111 112222222211 124677799999998777677777776665544566
Q ss_pred EEEEEcCC-hhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 045318 321 KIIVTTRN-QSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTL 392 (1388)
Q Consensus 321 ~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 392 (1388)
++|++|.+ ..+... ......|++++|+.++..+.+.+.+-. ..... -.+....|++.++|.|- |+..+
T Consensus 151 rFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~-EgI~~---edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 151 KFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ-EQLPF---EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 66665544 333322 222368999999999999888775422 11111 23567889999999874 44443
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=98.19 E-value=2.1e-05 Score=89.47 Aligned_cols=185 Identities=15% Similarity=0.146 Sum_probs=105.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-ceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD-LKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~ 259 (1388)
.+++|.++.++.|..++.. +..+.+.++|++|+||||+|+.+++... ...|. ..+-+..++..+.. ..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~--------~~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~~-~vr 82 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD--------GNMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGID-VVR 82 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccHH-HHH
Confidence 4688998888888877654 2334577999999999999999987521 11221 11112222222222 222
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh-hHHhh-cCC
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ-SVASM-MGS 337 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~-~~~ 337 (1388)
++++.+..... ..-.++.-++|+|+++.-.......+...+......+++|+++... .+... ...
T Consensus 83 ~~i~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 22222111000 0002456689999997766555555554444334567777766442 22111 112
Q ss_pred CceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHH
Q 045318 338 VSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTL 392 (1388)
Q Consensus 338 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~ 392 (1388)
...++++++++++....+...+-..+ .... .+....|++.++|-. -|+..+
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~eg-i~i~---~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEK-VPYV---PEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 25789999999999888887663222 1222 356788999999965 344333
No 72
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.18 E-value=1e-05 Score=100.08 Aligned_cols=168 Identities=22% Similarity=0.316 Sum_probs=96.6
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 181 AEVHGRDDDKK---AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 181 ~~~vGr~~~~~---~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
.+|+|.+..+. .+...+.. .....+.++|++|+||||+|+.+++. ...+| +.+.......
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f-----~~lna~~~~i-- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--------DRVGSLILYGPPGVGKTTLARIIANH--TRAHF-----SSLNAVLAGV-- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcc-----eeehhhhhhh--
Confidence 45888887764 34444433 34456789999999999999999985 33444 1111110000
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHhhc--CCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEE--EcCChh--H
Q 045318 258 TKAILRSICMHTDADDDLNSLQVKLKDGL--SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIV--TTRNQS--V 331 (1388)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iiv--TtR~~~--v 331 (1388)
.+..+......+.+ .+++.++|+||++.-....++.+...+. .|+.++| ||.+.. +
T Consensus 91 ---------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 91 ---------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEV 152 (725)
T ss_pred ---------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhh
Confidence 01111111121111 2467799999997765556666654332 3555555 344421 2
Q ss_pred Hhh-cCCCceEeCCCCChhhHHHHHHHccc------CCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 332 ASM-MGSVSAYELKKLTDDDCRLVFTQHSL------GTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~------~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
... .....++.+++++.++...++.+.+- +...... -.+....|++.+.|..
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~ 211 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDA 211 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCH
Confidence 111 12235799999999999999887652 1111111 2356788889998864
No 73
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=3.9e-05 Score=90.80 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=111.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCc-eEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDL-KAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~ 259 (1388)
.+++|-+.-++.+...+.... -..-+.++|+.|+||||+|+.+++.......... ..+..+.... ...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-------i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~----~C~ 89 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-------LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCT----NCI 89 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCCh----HHH
Confidence 468899999998888776532 2356789999999999999999875221111000 0000000000 000
Q ss_pred HHHHHh-----cCCCCCCCcHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEE-EEcCCh
Q 045318 260 AILRSI-----CMHTDADDDLNSLQVKLKD----GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKII-VTTRNQ 329 (1388)
Q Consensus 260 ~i~~~l-----~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ii-vTtR~~ 329 (1388)
.|.... .........++++...+.. -+.+++-++|+|+++.-....|..+...+......+.+| +||+..
T Consensus 90 ~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred HHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 000000 0000011122222222211 134667789999998877677888877776555566655 455555
Q ss_pred hHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 330 SVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 330 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
.+.... .....+++++++.++....+.+.+-..+ .... .+....|++.++|.+--+
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-i~ie---~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-LKTD---IEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHH
Confidence 554433 2235799999999999999888763222 1111 355677999999976433
No 74
>PLN03150 hypothetical protein; Provisional
Probab=98.16 E-value=1.7e-06 Score=107.25 Aligned_cols=92 Identities=28% Similarity=0.368 Sum_probs=83.2
Q ss_pred eeeEEEeCCcccc-ccccccccCcccceeeccCcccc-ccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecC
Q 045318 566 CLRVLCLREYNIC-KISNTIGDLKHLRHLDLSETLIE-TLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNY 643 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1388)
.++.|+|++|.+. .+|..++++.+|++|+|++|.+. .+|..++.+++|++|||++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4888999999987 78889999999999999999997 789999999999999999998888899999999999999999
Q ss_pred CCCCcccCcCCCCC
Q 045318 644 NVPLLEGMPLRIGH 657 (1388)
Q Consensus 644 ~~~~~~~~p~~i~~ 657 (1388)
+|.+...+|..++.
T Consensus 499 ~N~l~g~iP~~l~~ 512 (623)
T PLN03150 499 GNSLSGRVPAALGG 512 (623)
T ss_pred CCcccccCChHHhh
Confidence 99977788877764
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=4.9e-05 Score=89.99 Aligned_cols=199 Identities=13% Similarity=0.132 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.++||-+.-++.|.+++.... -...+.++|..|+||||+|+.+.+...-...-.... +. +.....-...+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-------LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~-~~PCG~C~sC~~ 86 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-------LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-IT-AQPCGQCRACTE 86 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-------CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CC-CCCCcccHHHHH
Confidence 468999999999999987642 235678999999999999999987521100000000 00 000000000111
Q ss_pred HHH-----HhcCCCCCCCcHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEE-EcCChh
Q 045318 261 ILR-----SICMHTDADDDLNSLQVKLKDG----LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIV-TTRNQS 330 (1388)
Q Consensus 261 i~~-----~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iiv-TtR~~~ 330 (1388)
|.. -+.........++++.+.+... ..++.-++|+|+++.-+...+..+...+-....+.++|+ ||....
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 100 0000000112233333322221 245667999999988776777777766654444556554 444444
Q ss_pred HHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 331 VASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
+...+ .....+.++.++.++..+.+.+.+-. ...... .+..+.|++.++|.|..+..+
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~-Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE-EGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 43221 12257999999999998887765421 111111 245688999999988654443
No 76
>PRK08727 hypothetical protein; Validated
Probab=98.15 E-value=4.4e-05 Score=82.20 Aligned_cols=148 Identities=17% Similarity=0.123 Sum_probs=87.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..+.|+|..|+|||+|++++++.. ..+...+.++++.+ ....+. ..+. .+ .+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~-----------------~~~~-~l-~~~ 94 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR-----------------DALE-AL-EGR 94 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH-----------------HHHH-HH-hcC
Confidence 459999999999999999998863 22223455665322 111111 1111 11 123
Q ss_pred EEEEEeCCCCCC-hhhhhhhcccccC--CCCCcEEEEEcCC---------hhHHhhcCCCceEeCCCCChhhHHHHHHHc
Q 045318 291 FLLVLDDMWNDN-YGDWTSLRLPFVA--GASGSKIIVTTRN---------QSVASMMGSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 291 ~LlVlDdv~~~~-~~~~~~l~~~~~~--~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
-+||+||+.... ...|....-.+.+ ...|..||+|++. +++.+.+.....+++++++.++-.+++.++
T Consensus 95 dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~ 174 (233)
T PRK08727 95 SLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRER 174 (233)
T ss_pred CEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHH
Confidence 489999995432 1234322212222 1346679999985 223333444568999999999999999987
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 359 SLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
+...+ ...+ ++...-|++.++|-.-.+
T Consensus 175 a~~~~-l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 175 AQRRG-LALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHcC-CCCC---HHHHHHHHHhCCCCHHHH
Confidence 64322 2222 366778888888755443
No 77
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=2.1e-06 Score=106.52 Aligned_cols=105 Identities=25% Similarity=0.306 Sum_probs=92.1
Q ss_pred cccccccchHHHHhhccCceeeEEEeCCcccc-ccccccccCcccceeeccCcccc-ccccchhcccccceeecCCCcch
Q 045318 547 TFSRHFLSDSVVHMLLKLQCLRVLCLREYNIC-KISNTIGDLKHLRHLDLSETLIE-TLPESVNTLYNLHTLLLESCSRL 624 (1388)
Q Consensus 547 ~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~ 624 (1388)
+++.+.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|..++++++|++|+|++|...
T Consensus 424 ~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 424 GLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred ECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 56677777888889999999999999999997 88999999999999999999998 78999999999999999999888
Q ss_pred hhcchhhccc-CCCCeeecCCCCCcccC
Q 045318 625 KKLCADMGNL-IKLRHLNNYNVPLLEGM 651 (1388)
Q Consensus 625 ~~lp~~i~~L-~~L~~L~l~~~~~~~~~ 651 (1388)
..+|..++.+ .++..+++.+|..+...
T Consensus 504 g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 504 GRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred ccCChHHhhccccCceEEecCCccccCC
Confidence 8999988764 57788888888744433
No 78
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=0.00014 Score=82.99 Aligned_cols=207 Identities=17% Similarity=0.123 Sum_probs=127.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAI 261 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (1388)
.+.+|+++++++...|...-.+ ....-+.|+|..|+|||+.++.|.+..+....=...++|.+-...+..+++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~----~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG----ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC----CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 3889999999999887654322 222338899999999999999999863222111127889999999999999999
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHhhcC--CceEEEEEeCCCCCChhhhhhhcccccCCC-CCcE--EEEEcCChhHHhhcC
Q 045318 262 LRSICMHTDADDDLNSLQVKLKDGLS--RKKFLLVLDDMWNDNYGDWTSLRLPFVAGA-SGSK--IIVTTRNQSVASMMG 336 (1388)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-~gs~--iivTtR~~~v~~~~~ 336 (1388)
+.+++..........+....+.+.+. ++.++||||+++.-....-+.+...+.... ..++ ||..+-+......+.
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99998554444555566666666664 689999999995432111122222222222 2344 344444443333221
Q ss_pred C-------CceEeCCCCChhhHHHHHHHccc---CCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 337 S-------VSAYELKKLTDDDCRLVFTQHSL---GTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 337 ~-------~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
. ...+...|-+.+|-.+.+..++- ..+. -.+..++-+|...++..|---.||..+-
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~-~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGV-IDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCC-cCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 1 12367888889998888888763 2222 2222333344444444444555555443
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=4.2e-05 Score=91.09 Aligned_cols=186 Identities=16% Similarity=0.114 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-------------------ccCC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE-------------------SHFD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~ 241 (1388)
.+++|-+..++.+...+... .-...+.++|+.|+||||+|+.+++...-. ..|.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~-------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~ 88 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQ-------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFI 88 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCC
Confidence 46899999999999888653 223557799999999999999998742110 0122
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCc
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGS 320 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs 320 (1388)
..+++.......++ +..++...+.. -..+++-++|+|++..-....++.+...+......+
T Consensus 89 dlieidaas~~gvd------------------~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v 150 (546)
T PRK14957 89 DLIEIDAASRTGVE------------------ETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYV 150 (546)
T ss_pred ceEEeecccccCHH------------------HHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCc
Confidence 22222222222221 12222222221 123566799999997766667777777666554556
Q ss_pred EEE-EEcCChhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHHh
Q 045318 321 KII-VTTRNQSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTLGGL 395 (1388)
Q Consensus 321 ~ii-vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~ 395 (1388)
.+| +||....+... ......+++++++.++....+.+.+-. ..... -......|++.++|-+ -|+..+-.+
T Consensus 151 ~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~-egi~~---e~~Al~~Ia~~s~GdlR~alnlLek~ 224 (546)
T PRK14957 151 KFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAK-ENINS---DEQSLEYIAYHAKGSLRDALSLLDQA 224 (546)
T ss_pred eEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH-cCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 555 45544434322 222368999999999987777664421 11111 1355678999999965 455555433
No 80
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=6.2e-05 Score=88.91 Aligned_cols=201 Identities=18% Similarity=0.152 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-------------------CC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESH-------------------FD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~ 241 (1388)
.+++|.+...+.+...+..+ .-...+.++|++|+||||+|+.+++....... +.
T Consensus 14 ~divGq~~i~~~L~~~i~~~-------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 46899988888887777553 22256789999999999999999875211110 00
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCc
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGS 320 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs 320 (1388)
....+..+...+..++ ++|. +.... ...+++-++|+|+++.-.....+.+...+.......
T Consensus 87 dv~el~aa~~~gid~i-R~i~-----------------~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 87 DVIELDAASNRGIDEI-RKIR-----------------DAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred ccEEEeCcccCCHHHH-HHHH-----------------HHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 1122222211111111 1111 11111 123566799999996654445566665554433344
Q ss_pred EEEE-EcCChhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHHhhc
Q 045318 321 KIIV-TTRNQSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG-LPLAAKTLGGLLR 397 (1388)
Q Consensus 321 ~iiv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~~~l~ 397 (1388)
.+|+ ||....+.... .....+++.++++++....+.+.+...+ ..-+ .+....|++.++| ++.|+..+-.+..
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~i~---~eal~~Ia~~s~GdlR~aln~Le~l~~ 224 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IEID---REALSFIAKRASGGLRDALTMLEQVWK 224 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444 44333443332 2335789999999998888877653221 1111 3567788887865 5677776655432
Q ss_pred C---CCCHHHHHHHHh
Q 045318 398 G---KSNPFDWRNVLN 410 (1388)
Q Consensus 398 ~---~~~~~~w~~~~~ 410 (1388)
. +-+.+....++.
T Consensus 225 ~~~~~It~e~V~~~l~ 240 (472)
T PRK14962 225 FSEGKITLETVHEALG 240 (472)
T ss_pred hcCCCCCHHHHHHHHc
Confidence 1 223444544443
No 81
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=2.6e-06 Score=69.61 Aligned_cols=59 Identities=32% Similarity=0.318 Sum_probs=51.9
Q ss_pred cccceeeccCcccccccc-chhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCC
Q 045318 588 KHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 588 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
++|++|++++|.+..+|. .+..+++|++|++++|.....-|..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999974 78999999999999986654445688999999999999986
No 82
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.10 E-value=6.5e-05 Score=86.53 Aligned_cols=180 Identities=13% Similarity=0.121 Sum_probs=103.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEe--CCccCHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCV--SDDFDAIKVT 258 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~ 258 (1388)
.+++|+++.++.+..++... ..+.+.++|..|+||||+|+.+++... ...+. ..++.+ +...... ..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~-~~~i~~~~~~~~~~~-~~ 85 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--------NMPHLLFAGPPGTGKTTAALALARELY-GEDWR-ENFLELNASDERGID-VI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCccc-cceEEeccccccchH-HH
Confidence 45889999999999988542 234579999999999999999987521 11121 112222 2221111 11
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh-hHHhh-cC
Q 045318 259 KAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ-SVASM-MG 336 (1388)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~-~~ 336 (1388)
.+.+.++.... ..-...+-++|+|+++.-....+..+...+......+++|+++... .+... ..
T Consensus 86 ~~~i~~~~~~~--------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 86 RNKIKEFARTA--------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHHHHhcC--------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 11111111100 0011345689999996654444555555554444556777766432 11111 11
Q ss_pred CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 337 SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
....+++.++++++....+...+-..+ .... .+....+++.++|.+--+
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~-~~i~---~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEG-IEIT---DDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHH
Confidence 224689999999999888877663222 1112 356788899999987543
No 83
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=2.1e-05 Score=90.76 Aligned_cols=194 Identities=15% Similarity=0.098 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|-+.-+..|..++.... -...+.++|+.|+||||+|+.+++...-...... ..+.....-..+...
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g 87 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKG 87 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHcc
Confidence 468999999999988886532 1245789999999999999999885211110000 000111111111111
Q ss_pred HHHHh---cC-CCCCCCcHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEE-EEcCChhHHhh
Q 045318 261 ILRSI---CM-HTDADDDLNSLQVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKII-VTTRNQSVASM 334 (1388)
Q Consensus 261 i~~~l---~~-~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ii-vTtR~~~v~~~ 334 (1388)
+...+ .. .....+++.++.+.+... ..++.-++|+|+++.-....+..+...+-.......+| .||....+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 00000 00 000112223333333221 24566799999998877777888776664433455555 45444444332
Q ss_pred c-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 045318 335 M-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLA 388 (1388)
Q Consensus 335 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 388 (1388)
. .....|.+.+++.++..+.+.+.+-..+ ... -.+....|++.++|.+--
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~---e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQY---DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCChHHH
Confidence 2 2235799999999998888877653221 111 135678899999998743
No 84
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.05 E-value=2.6e-05 Score=82.88 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=84.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
+.+.-+.+||++|+||||||+.+........ ..||..|....-..-.++|+++... ...+.
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~ 220 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN---------------EKSLT 220 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH---------------HHhhh
Confidence 5567788999999999999999998743333 4467776655444444555444321 12345
Q ss_pred CceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEE--EcCChhHH---hhcCCCceEeCCCCChhhHHHHHHHc
Q 045318 288 RKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIV--TTRNQSVA---SMMGSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iiv--TtR~~~v~---~~~~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
++|.+|++|.|..-+..+.+.+. |.-.+|.-++| ||-++..- .......++-++.|..++-..++.+.
T Consensus 221 krkTilFiDEiHRFNksQQD~fL---P~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 221 KRKTILFIDEIHRFNKSQQDTFL---PHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred cceeEEEeHHhhhhhhhhhhccc---ceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 78899999999765544444443 33345665544 66664321 22344478999999999998888773
No 85
>PRK09087 hypothetical protein; Validated
Probab=98.04 E-value=3.4e-05 Score=82.13 Aligned_cols=139 Identities=14% Similarity=0.125 Sum_probs=86.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
+.+.|||+.|+|||+|++.++.... ..+++.. .+..+++..+ .+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~~~---------------------~~-- 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAANAA---------------------AE-- 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHHhh---------------------hc--
Confidence 5689999999999999999887521 1133221 1111111111 11
Q ss_pred EEEEEeCCCCC--ChhhhhhhcccccCCCCCcEEEEEcCC---------hhHHhhcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 291 FLLVLDDMWND--NYGDWTSLRLPFVAGASGSKIIVTTRN---------QSVASMMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 291 ~LlVlDdv~~~--~~~~~~~l~~~~~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
-+|++||+... +...+-.+...+. ..|..||+|++. ++....+....+++++++++++-.+++.+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~ 166 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLF 166 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHH
Confidence 27888999543 1222222222222 346779998873 4445555666789999999999999999887
Q ss_pred cCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 360 LGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
-.. ....+ +++..-|++++.|..-++..
T Consensus 167 ~~~-~~~l~---~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 167 ADR-QLYVD---PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHc-CCCCC---HHHHHHHHHHhhhhHHHHHH
Confidence 322 22222 46778888888887766554
No 86
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.04 E-value=5.3e-05 Score=81.96 Aligned_cols=152 Identities=19% Similarity=0.125 Sum_probs=87.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1388)
...+.|+|..|+|||+||+.+++... ...+ ...+++..... .. + ... ..
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~------~~----~------------------~~~-~~ 90 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPL------LA----F------------------DFD-PE 90 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhH------HH----H------------------hhc-cc
Confidence 35688999999999999999998632 1122 23444332211 00 0 011 22
Q ss_pred eEEEEEeCCCCCChhhhhhhcccccCC-CCCc-EEEEEcCChhHHh--------hcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 290 KFLLVLDDMWNDNYGDWTSLRLPFVAG-ASGS-KIIVTTRNQSVAS--------MMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 290 ~~LlVlDdv~~~~~~~~~~l~~~~~~~-~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
.-+||+||+..........+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+.+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 347899999654322323343333221 2343 4677776533221 22233678999999988777766543
Q ss_pred cCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhh
Q 045318 360 LGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLL 396 (1388)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 396 (1388)
-. ...... ++....+++.+.|.+..+..+-..+
T Consensus 171 ~~-~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 AE-RGLQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HH-cCCCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 21 112222 3677888899999998877766554
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.04 E-value=7.6e-05 Score=80.49 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=89.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..+.|+|+.|+|||+|++++++... ..-..+.++.+..... ...+..+.+.+ -
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~-----~ 98 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ-----L 98 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh--------------------hhHHHHHHhhh-----C
Confidence 5788999999999999999998532 2223345555432100 00111111111 1
Q ss_pred EEEEEeCCCCCC-hhhhhhhc-ccccCC-CCC-cEEEEEcCCh---------hHHhhcCCCceEeCCCCChhhHHHHHHH
Q 045318 291 FLLVLDDMWNDN-YGDWTSLR-LPFVAG-ASG-SKIIVTTRNQ---------SVASMMGSVSAYELKKLTDDDCRLVFTQ 357 (1388)
Q Consensus 291 ~LlVlDdv~~~~-~~~~~~l~-~~~~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (1388)
-++++||+.... ...|+... ..+... ..| .++|+||+.. +..+.+....+++++++++++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 379999995432 13443322 222111 123 4799999753 3444556667899999999999999888
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 358 HSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
++...+ ...+ +++..-|++++.|-.-++..+
T Consensus 179 ~a~~~~-~~l~---~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 179 RARLRG-FELP---EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhhcCCHHHHHHH
Confidence 663321 2222 467888999998866444333
No 88
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00011 Score=87.35 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+++...-.. |.... ..+.-...+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-------l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~ 81 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-------LTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCES 81 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHH
Confidence 468999999999999886532 235678999999999999999987521111 11110 0010011111
Q ss_pred HHHHhc-----CCCCCCCcHHHH---HHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEc-CChh
Q 045318 261 ILRSIC-----MHTDADDDLNSL---QVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTT-RNQS 330 (1388)
Q Consensus 261 i~~~l~-----~~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-R~~~ 330 (1388)
+..... ........++++ ...+... ..+++-++|+|+++.-....+..+...+......+.+|++| ....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 111000 000001112222 2211111 12344469999997766566777776665444455555544 4334
Q ss_pred HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHH
Q 045318 331 VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTLGG 394 (1388)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~ 394 (1388)
+... ......+++.++++++....+...+-..+ .... .+.+..+++.++|.+ .|+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~Is---~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK-IKIE---DNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4322 22235799999999999887777552211 1111 355788999999965 45554444
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.02 E-value=0.00013 Score=84.15 Aligned_cols=184 Identities=11% Similarity=0.075 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCC--CCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-------------------cc
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA--DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE-------------------SH 239 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~ 239 (1388)
.+++|-+.-++.+..++..+.... ....-..-+.++|+.|+||||+|+.++....-. .|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 368899999999999887642100 000124568899999999999999987631110 01
Q ss_pred CCceEEEEeC-CccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCC
Q 045318 240 FDLKAWTCVS-DDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGA 317 (1388)
Q Consensus 240 F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~ 317 (1388)
.| ..++... ....+. ++.++.+.+.. -..+++-++|+|+++.-.......+...+....
T Consensus 85 pD-~~~i~~~~~~i~i~------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PD-VRVVAPEGLSIGVD------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CC-EEEeccccccCCHH------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 11 1111111 111111 11122222211 113455688889997766556666665554444
Q ss_pred CCcEEEEEcCC-hhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 318 SGSKIIVTTRN-QSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 318 ~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
.+..+|++|.+ ..+.... .....+.+.+++.++..+.+.... + .. .+.+..+++.++|.|.....+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~-----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G-----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 56666665555 3443322 223689999999999988887432 1 11 245778999999999765444
No 90
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.02 E-value=0.00021 Score=83.66 Aligned_cols=183 Identities=15% Similarity=0.145 Sum_probs=109.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc--------------------ccC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE--------------------SHF 240 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F 240 (1388)
.+++|.+..++.+.+++... .-...+.++|+.|+||||+|+.+.....-. .++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 46899999999999988653 223577899999999999998887642100 122
Q ss_pred CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCC
Q 045318 241 DLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASG 319 (1388)
Q Consensus 241 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~g 319 (1388)
+. .++......... +..++.+.+.. -..+++-++|+|++..-....+..+...+......
T Consensus 87 ~~-~~~~~~~~~~~~------------------~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 87 DV-IEIDAASNNGVD------------------DIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred CE-EEeeccccCCHH------------------HHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 21 222211111111 11222222211 12345558899999665445566666666444456
Q ss_pred cEEEEEcCChh-HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 320 SKIIVTTRNQS-VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 320 s~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
+.+|++|.+.. +... ......+++.++++++..+.+...+-..+ ...+ .+.+..+++.++|.|-.+....
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-~~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-IKIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 67666665433 2222 12235788999999998888877653222 1111 3667889999999886554443
No 91
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.00 E-value=3.4e-06 Score=100.32 Aligned_cols=123 Identities=22% Similarity=0.320 Sum_probs=97.0
Q ss_pred CCCCCceeeeecccccccccchHHHHhhccCc-eeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccc
Q 045318 534 DCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQ-CLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYN 612 (1388)
Q Consensus 534 ~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 612 (1388)
..+.+..|. +..+.+. .++.....+. +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+.+
T Consensus 114 ~~~~l~~L~-----l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 114 ELTNLTSLD-----LDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred cccceeEEe-----cCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhh
Confidence 345566663 3344433 2333445553 89999999999999998899999999999999999999998889999
Q ss_pred cceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 613 LHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 613 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
|+.|++++| .+..+|..+..+..|+.|.+++|. ....+..+.++.++..|
T Consensus 188 L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l 237 (394)
T COG4886 188 LNNLDLSGN-KISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL 237 (394)
T ss_pred hhheeccCC-ccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence 999999997 678889888888889999999996 34455556666666655
No 92
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=8.1e-05 Score=90.08 Aligned_cols=193 Identities=16% Similarity=0.146 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.++||-+.-++.|...+.... -...+.++|+.|+||||+|+.+++...-...+. ......-...+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~ 81 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCRE 81 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHH
Confidence 468999999999988886532 224567999999999999999987521111000 000000011111
Q ss_pred HHHH-------hcCC-CCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hh
Q 045318 261 ILRS-------ICMH-TDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QS 330 (1388)
Q Consensus 261 i~~~-------l~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~ 330 (1388)
|... +... ....+++.++...+.. -..+++-++|+|+++.-....+..+...+-......++|.+|.+ ..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 1100 0000 0011112222222221 12467779999999877766777776666554455665555544 33
Q ss_pred HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 331 VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
+... ......|.+++++.++..+.+.+.+-..+ ... -......|++.++|.+-.+..
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~---e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IPF---EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3322 12236799999999999888876542111 111 134567899999997754433
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=9.6e-05 Score=88.84 Aligned_cols=179 Identities=14% Similarity=0.151 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc-------------------CC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESH-------------------FD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~ 241 (1388)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+....... |.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~ 88 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-------LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV 88 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCcc
Confidence 479999999999999987542 2356789999999999999999875211110 11
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhhhhhcccccCCC
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD----GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGA 317 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~ 317 (1388)
..+.+..+.. ..++.+.+.+.. -..+++-++|+|++..........+...+....
T Consensus 89 DvlEidaAs~---------------------~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp 147 (709)
T PRK08691 89 DLLEIDAASN---------------------TGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP 147 (709)
T ss_pred ceEEEecccc---------------------CCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC
Confidence 1112211111 122222222211 123566789999997655445556665554434
Q ss_pred CCcEEEEEcCCh-hHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 318 SGSKIIVTTRNQ-SVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 318 ~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
..+++|++|.+. .+... ......+.+.+++.++....+.+.+-..+ ... -.+....|++.++|.+--+..
T Consensus 148 ~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i~i---d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 148 EHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-IAY---EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-CCc---CHHHHHHHHHHhCCCHHHHHH
Confidence 456677666543 22211 12224688899999999888877653222 111 135678899999998744433
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00014 Score=87.96 Aligned_cols=196 Identities=12% Similarity=0.134 Sum_probs=109.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC--CceEEEEeCCccCHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF--DLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~ 258 (1388)
.++||-+.-++.|.+++... .-...+.++|+.|+||||+|+.+.+...-.... ..... ..++.-..-
T Consensus 16 ~dviGQe~vv~~L~~~l~~~-------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C 84 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQ-------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQAC 84 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHH
Confidence 46889988888898888764 223567899999999999999996542111000 00000 000000111
Q ss_pred HHHHHH-----hcCCCCCCCcHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEc-CC
Q 045318 259 KAILRS-----ICMHTDADDDLNSLQVKLKD----GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTT-RN 328 (1388)
Q Consensus 259 ~~i~~~-----l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-R~ 328 (1388)
+.|... +.........++++.+.+.. -..++.-++|+|+|+.-+...+..+...+.......++|++| ..
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence 111000 00000011222333222221 113455689999998877777777776665544566666555 43
Q ss_pred hhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 329 QSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 329 ~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
..+... ......++++++++++..+.+.+.+-..+ .... .+....|++.++|.+-.+..
T Consensus 165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~eg-i~ie---~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAEN-VPAE---PQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 333322 22336799999999998888877652222 1111 35678899999997744433
No 95
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=0.00014 Score=80.82 Aligned_cols=214 Identities=15% Similarity=0.071 Sum_probs=125.9
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHH
Q 045318 179 NEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
++..++||+.|++.+.+++...-.. ....-+-|.|-+|.|||.+...|+.+..-...=..++++..-.--....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHH
Confidence 4567999999999999998764322 445678899999999999999999873222111244666665556778889
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHhhcCC--ceEEEEEeCCCCCChhhhhhhcccccCC-CCCcEEEEEcCC--hh---
Q 045318 259 KAILRSICMHTDADDDLNSLQVKLKDGLSR--KKFLLVLDDMWNDNYGDWTSLRLPFVAG-ASGSKIIVTTRN--QS--- 330 (1388)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~~~~~-~~gs~iivTtR~--~~--- 330 (1388)
..|...+...........+....+.++..+ +-+|+|+|.++.-....-..+...|.+. -+++|+|+.--- -+
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 999888833222222224445555555543 3689999998543222333344444332 356666543211 01
Q ss_pred --HHhh----cCCCceEeCCCCChhhHHHHHHHcccCCCCCC-CCchHHHHHHHHHHHcCCChHHHHHHHHhh
Q 045318 331 --VASM----MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFS-NHQHLKEIGEEILKKCNGLPLAAKTLGGLL 396 (1388)
Q Consensus 331 --v~~~----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~-~~~~~~~~~~~i~~~c~g~Plai~~~~~~l 396 (1388)
.... -.....+..+|-+.++-.+++..+.-...... .+...+-.|++++.-.|.+--|+.+.-+++
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1111 11225678899999999999998863221111 112333334444444444555555544433
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00014 Score=85.42 Aligned_cols=181 Identities=17% Similarity=0.161 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-------------------cccCC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV-------------------ESHFD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------------~~~F~ 241 (1388)
.++||-+..++.+.+.+..+. -..-+.++|+.|+||||+|+.+++...- ...+.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-------i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-------IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 468999998888888876532 2246889999999999999998763100 01112
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcE
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSK 321 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ 321 (1388)
.++.+..+...++++ .+++++.... .-..+++-++|+|++..-.....+.+...+......++
T Consensus 86 Dv~eidaas~~~vdd-IR~Iie~~~~----------------~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 86 DVIEIDAASNTSVDD-IKVILENSCY----------------LPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred CEEEEecccCCCHHH-HHHHHHHHHh----------------ccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 233344333333322 1222222210 01235666899999977665667777766665556676
Q ss_pred EEEEc-CChhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 322 IIVTT-RNQSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 322 iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
+|++| ....+.... .....++++++++++..+.+.+.+...+ ... -.+....|++.++|.+-.+
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg-i~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN-IEH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHH
Confidence 66555 334444322 2336799999999999888887663222 111 1356778999999977543
No 97
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.97 E-value=2.4e-05 Score=87.46 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=63.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc--cCHHHHHHHHHHHhcCCCCCCCcHH------HHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD--FDAIKVTKAILRSICMHTDADDDLN------SLQV 280 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 280 (1388)
.-..++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.+...+-....+..... ...+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 34688999999999999999999975433 8999999999866 7899999998655433322211111 1111
Q ss_pred HHHhh-cCCceEEEEEeCCC
Q 045318 281 KLKDG-LSRKKFLLVLDDMW 299 (1388)
Q Consensus 281 ~l~~~-l~~k~~LlVlDdv~ 299 (1388)
..... -.|++++|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 12221 25899999999993
No 98
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.97 E-value=0.00019 Score=74.91 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=62.5
Q ss_pred CceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCC
Q 045318 288 RKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ-SVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDF 365 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (1388)
+.+-++|+||+..-....++.+...+......+.+|++|++. .+.... .....+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 556689999997766556777776665555566777777653 222221 22358999999999998888776 1 1
Q ss_pred CCCchHHHHHHHHHHHcCCChH
Q 045318 366 SNHQHLKEIGEEILKKCNGLPL 387 (1388)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~g~Pl 387 (1388)
. .+.+..|++.++|.|.
T Consensus 170 ~-----~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 S-----EEAAELLLALAGGSPG 186 (188)
T ss_pred C-----HHHHHHHHHHcCCCcc
Confidence 1 3568899999999885
No 99
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.95 E-value=0.00032 Score=80.25 Aligned_cols=194 Identities=12% Similarity=0.083 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceE------EEEeCCccCH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKA------WTCVSDDFDA 254 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~------wv~~s~~~~~ 254 (1388)
.+++|-+..++.+.+.+..+. -..-+.++|+.|+||+|+|..+.+..--+....... =..+....
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-------l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c-- 89 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-------LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH-- 89 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-------CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC--
Confidence 578999999999999887642 234688999999999999988876421111000000 00000000
Q ss_pred HHHHHHHHHH-------hcC---CC----CCCCcHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhhhhhcccccC
Q 045318 255 IKVTKAILRS-------ICM---HT----DADDDLNSLQVKLKDGL-----SRKKFLLVLDDMWNDNYGDWTSLRLPFVA 315 (1388)
Q Consensus 255 ~~~~~~i~~~-------l~~---~~----~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~ 315 (1388)
..-+.|... +.. .. .....++++. .+.+.+ .+.+-++|+||++..+......+...+..
T Consensus 90 -~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 90 -PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred -hHHHHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 011111000 000 00 0112234432 222332 25667899999987776677777666654
Q ss_pred CCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 316 GASGSKIIVTTRNQ-SVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 316 ~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
...++.+|++|... .+.... .....+.+.+++.++..+.+..... . .. .+....+++.++|.|..+..+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~-~----~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP-D----LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-c----CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 44566677777654 332222 2236899999999999999887531 1 11 1222678999999998765553
No 100
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00013 Score=87.20 Aligned_cols=183 Identities=14% Similarity=0.113 Sum_probs=108.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc-------------------cCC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVES-------------------HFD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~ 241 (1388)
.++||-+.-++.+..++.... -...+.++|+.|+||||+|+.+.+...-.. .|.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 468999999999999996642 224578999999999999999987521111 111
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcE
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSK 321 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ 321 (1388)
..+.+..+....++++ +++++.+.. .-..++.-++|+|+|+.-.......+...+......++
T Consensus 89 d~~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 89 DLFEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred eEEEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 1222222222222221 122221111 11235666899999987766677777766655555677
Q ss_pred EEEEcCC-hhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 322 IIVTTRN-QSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 322 iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
+|++|.+ ..+... ......++++++++++....+.+.+-. ...... .+....|++.++|.+-.+..
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~-egi~~~---~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE-ENVEFE---NAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHcCCcHHHHHH
Confidence 6665544 333222 122256889999998877665554421 111111 24567889999998754433
No 101
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00021 Score=81.15 Aligned_cols=197 Identities=16% Similarity=0.184 Sum_probs=113.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc--cCCceEEEEeCCccCHHHH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVES--HFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~~s~~~~~~~~ 257 (1388)
-..++|-++..+.+...+... .....+.|+|+.|+||||+|..+.+..--.. .+.... ..........
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~ 91 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPV 91 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHH
Confidence 457899999999999998764 2234688999999999999998887521100 011110 0001111112
Q ss_pred HHHHHHH-------hcCC----C---CCCCcHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhhhhhcccccCCCC
Q 045318 258 TKAILRS-------ICMH----T---DADDDLNSLQVKLKDGL-----SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGAS 318 (1388)
Q Consensus 258 ~~~i~~~-------l~~~----~---~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~ 318 (1388)
.+.|... +... . .....++++. .+.+++ .+++-++|+|+++.-+......+...+.....
T Consensus 92 c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~ 170 (351)
T PRK09112 92 WRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPA 170 (351)
T ss_pred HHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCC
Confidence 2222211 1100 0 0112234433 233333 35667999999987766666666655544334
Q ss_pred CcE-EEEEcCChhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 319 GSK-IIVTTRNQSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 319 gs~-iivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
+.. |++|++...+.... .....+++.+++.++..+.+...... . . -..+....+++.++|.|..+..+.
T Consensus 171 ~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~--~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 171 RALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q--G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c--C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445 45554443333221 22258999999999999998874311 1 1 113456789999999998665443
No 102
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.92 E-value=5.3e-05 Score=88.08 Aligned_cols=182 Identities=14% Similarity=0.094 Sum_probs=99.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (1388)
...+.|+++.++++.+.+...-... ..-...+-|.++|++|+|||++|+++++. ....| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~~---- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVVG---- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecch----
Confidence 3578999999999988774321110 00022356889999999999999999986 33333 22221
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC-----------hh---hhhhhccccc--CCCC
Q 045318 255 IKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN-----------YG---DWTSLRLPFV--AGAS 318 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~---~~~~l~~~~~--~~~~ 318 (1388)
.++..... + .....+...+...-...+.+|++||++.-. .. .+..+...+. ....
T Consensus 190 ~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 11111110 0 001111111222223456899999996421 11 1222222221 1134
Q ss_pred CcEEEEEcCChhHHh-hc----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 319 GSKIIVTTRNQSVAS-MM----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 319 gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
+.+||.||....... .+ .....+.+...+.++..++|..++.+..- ...-+ ...+++.+.|..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 678888887543221 11 22357899999999999999987643221 11112 356677777754
No 103
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.91 E-value=0.00027 Score=76.00 Aligned_cols=193 Identities=18% Similarity=0.115 Sum_probs=114.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc----CCceEEEEeCCccCHHHHHHHHHHHh
Q 045318 190 KKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESH----FDLKAWTCVSDDFDAIKVTKAILRSI 265 (1388)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (1388)
++++.+++..+.. ...+-+.|||..|.|||++++.+...+-.... --.++.|.+...++...+...|+.++
T Consensus 46 L~~L~~Ll~~P~~-----~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 46 LDRLEELLEYPKR-----HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHhCCcc-----cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 3455555544322 45567899999999999999999975322111 11466777788899999999999999
Q ss_pred cCCCCCCCcHHHHHHHHHhhcCC-ceEEEEEeCCCCCC---hhhhhh---hcccccCCCCCcEEEEEcCChhHHhhcCC-
Q 045318 266 CMHTDADDDLNSLQVKLKDGLSR-KKFLLVLDDMWNDN---YGDWTS---LRLPFVAGASGSKIIVTTRNQSVASMMGS- 337 (1388)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~---~~~~~~---l~~~~~~~~~gs~iivTtR~~~v~~~~~~- 337 (1388)
+..........++.....+.++. +--+||+|++.+.- ..+... ....+.+.-.-+-|.|-|++.--+-....
T Consensus 121 gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 121 GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 98876666666665555555543 33489999996521 111222 22233233344566666654322211111
Q ss_pred ----CceEeCCCCChhhHHHHHHHcc---cCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 045318 338 ----VSAYELKKLTDDDCRLVFTQHS---LGTKDFSNHQHLKEIGEEILKKCNGLPLA 388 (1388)
Q Consensus 338 ----~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 388 (1388)
-.++.+.....++-..-|.... ..-.. ...-...++++.|...++|+.=-
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHH
Confidence 1356677766665544333221 11111 11123468899999999998633
No 104
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.89 E-value=2.5e-06 Score=90.64 Aligned_cols=90 Identities=22% Similarity=0.219 Sum_probs=62.0
Q ss_pred HHhhccCceeeEEEeCCcccc-----ccccccccCcccceeeccCcc----ccccccch-------hcccccceeecCCC
Q 045318 558 VHMLLKLQCLRVLCLREYNIC-----KISNTIGDLKHLRHLDLSETL----IETLPESV-------NTLYNLHTLLLESC 621 (1388)
Q Consensus 558 ~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~----i~~lp~~i-------~~L~~L~~L~L~~~ 621 (1388)
...+..+..++.++|++|.+. .+-+.+.+.++||.-++++-. ..++|+.+ -..++|++||||.|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 334466778889999999775 344666777888888888742 23455443 34458999999988
Q ss_pred cchhhcchh----hcccCCCCeeecCCCCC
Q 045318 622 SRLKKLCAD----MGNLIKLRHLNNYNVPL 647 (1388)
Q Consensus 622 ~~~~~lp~~----i~~L~~L~~L~l~~~~~ 647 (1388)
-.-..-++. +...+.|++|.+.+|.+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 654433333 45688899999998873
No 105
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.89 E-value=0.00016 Score=76.77 Aligned_cols=163 Identities=19% Similarity=0.170 Sum_probs=93.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1388)
...+.|+|..|+|||.|.+++++.......=..++++ +..+....+...+.. ....+ +++.+++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~-----~~~~~----~~~~~~~- 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRD-----GEIEE----FKDRLRS- 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHT-----TSHHH----HHHHHCT-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHc-----ccchh----hhhhhhc-
Confidence 4457899999999999999999863211111234444 345566666666543 22222 3333442
Q ss_pred eEEEEEeCCCCCCh-hhhhh-hcccccC-CCCCcEEEEEcCCh---------hHHhhcCCCceEeCCCCChhhHHHHHHH
Q 045318 290 KFLLVLDDMWNDNY-GDWTS-LRLPFVA-GASGSKIIVTTRNQ---------SVASMMGSVSAYELKKLTDDDCRLVFTQ 357 (1388)
Q Consensus 290 ~~LlVlDdv~~~~~-~~~~~-l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (1388)
-=+|++||++.... ..|.. +...+.. ...|-+||+|++.. +..+.+...-+++++++++++..+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 34789999966432 22333 2222211 13567899999652 2333445556899999999999999998
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 358 HSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
++-..+ ... -++++.-|++++.+..-.+..+
T Consensus 178 ~a~~~~-~~l---~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 178 KAKERG-IEL---PEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHTT---S----HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHhC-CCC---cHHHHHHHHHhhcCCHHHHHHH
Confidence 874322 122 2467777888887765554433
No 106
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1e-05 Score=60.00 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=24.7
Q ss_pred eeeEEEeCCccccccccccccCcccceeeccCccccccc
Q 045318 566 CLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLP 604 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp 604 (1388)
+|++|++++|.|+.+|..+++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 466667777766666666666677777777666666554
No 107
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00024 Score=86.32 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=110.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC--ceEEEEeCCccCHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD--LKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~ 258 (1388)
.+++|.+..++.+.+++..+ .-..-+.++|+.|+||||+|+.+.+......... ...+-..... .--
T Consensus 24 ~dliGq~~~v~~L~~~~~~g-------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C 92 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETG-------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHC 92 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHH
Confidence 47899999999999998754 2234678999999999999999987522111110 0000000000 000
Q ss_pred HHHHHHhcC-----CCCCCCcHHHHH---HHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEc-CC
Q 045318 259 KAILRSICM-----HTDADDDLNSLQ---VKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTT-RN 328 (1388)
Q Consensus 259 ~~i~~~l~~-----~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-R~ 328 (1388)
+.|...-.. .......++++. +.++. -..+++-++|+|++..-.......+...+.....++.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 111110000 000112233322 22211 123455679999997766556677776665544566665544 44
Q ss_pred hhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 329 QSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 329 ~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
..+...+ .....++++.+++++....+.+.+-..+ .... .+....|++.++|.+.-+...
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i~i~---~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-VEVE---DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 4433222 2235799999999999888877653221 1111 256788999999988655443
No 108
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00014 Score=85.18 Aligned_cols=201 Identities=11% Similarity=0.141 Sum_probs=109.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEE-eCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTC-VSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~ 259 (1388)
.+++|.+.-++.+..++..+ .-...+.++|+.|+||||+|+.+++.-.-...++...|.. +......-..-+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~-------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~ 88 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMG-------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR 88 (397)
T ss_pred hhccChHHHHHHHHHHHHhC-------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH
Confidence 46889999889888888653 1224577999999999999999887522111111111110 000000000011
Q ss_pred HHHHHhcC-----CCCCCCcHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEc-CCh
Q 045318 260 AILRSICM-----HTDADDDLNSLQVKLKDG----LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTT-RNQ 329 (1388)
Q Consensus 260 ~i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-R~~ 329 (1388)
.+...... ........+++.+..... ..+++-++|+|++..-....++.+...+......+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11100000 000111123332221111 23456688999997766567777777766555566665555 444
Q ss_pred hHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 045318 330 SVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTL 392 (1388)
Q Consensus 330 ~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 392 (1388)
.+.... .....++++++++++..+.+...+-..+ ... -.+.+..|++.++|.+- |+..+
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i---~~~al~~l~~~s~g~lr~a~~~L 229 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISV---DADALQLIGRKAQGSMRDAQSIL 229 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 443322 1125789999999998877776542111 111 13668899999999774 44433
No 109
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00031 Score=84.72 Aligned_cols=184 Identities=14% Similarity=0.122 Sum_probs=106.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc-------------------cCC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVES-------------------HFD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~ 241 (1388)
.+++|-+.-++.+..++.... -...+.++|+.|+||||+|+.+.+...-.. .|.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~ 88 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFV 88 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 468999999999999887532 224567999999999999999987521110 111
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcE
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSK 321 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ 321 (1388)
..+++..+....+++ ++++++.... .-..+++-++|+|+++.-.......+...+......+.
T Consensus 89 d~~ei~~~~~~~vd~-ir~l~~~~~~----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 89 DLIEVDAASNTQVDA-MRELLDNAQY----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred ceeEeeccccCCHHH-HHHHHHHHhh----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 122222111111111 1111111110 11235677999999977665556666666655445666
Q ss_pred EEEEcCC-hhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 045318 322 IIVTTRN-QSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTL 392 (1388)
Q Consensus 322 iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 392 (1388)
+|.+|.+ ..+... ......+++++++.++..+.+.+.+-..+ ... -.+....|++.++|.+- |+..+
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 6655543 322211 11125789999999998877766542111 111 13456889999999774 44443
No 110
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.86 E-value=7.3e-05 Score=85.30 Aligned_cols=109 Identities=13% Similarity=0.072 Sum_probs=73.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.++++.++..+.+...+... +.|.++|++|+|||++|+.+++.......|+.+.||++++.++..+.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G 244 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQG 244 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcc
Confidence 45788999999999998653 35788999999999999999987544567888999999999887766543
Q ss_pred HHHHhcCCCCCCCcH-HHHHHHHHhhc--CCceEEEEEeCCCCCCh
Q 045318 261 ILRSICMHTDADDDL-NSLQVKLKDGL--SRKKFLLVLDDMWNDNY 303 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~-~~~~~~l~~~l--~~k~~LlVlDdv~~~~~ 303 (1388)
+. .......-. .-..+.+.+.. .++++++|+|++...+.
T Consensus 245 ~r----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani 286 (459)
T PRK11331 245 YR----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL 286 (459)
T ss_pred cC----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH
Confidence 21 000000000 11112222222 24789999999966543
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00035 Score=83.87 Aligned_cols=198 Identities=12% Similarity=0.163 Sum_probs=111.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|-+..++.|..++... .-...+.++|+.|+||||+|+.+++...-....+. ..++.-...+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~-------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~ 81 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQEN-------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRK 81 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHH
Confidence 46789888888888887653 12356778999999999999999876321110000 00000000111
Q ss_pred HHHHhc-----CCCCCCCcHHHHH---HHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hh
Q 045318 261 ILRSIC-----MHTDADDDLNSLQ---VKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QS 330 (1388)
Q Consensus 261 i~~~l~-----~~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~ 330 (1388)
|..... ........++++. ..+.. -..+++-+||+|++..-....+..+...+........+|++|.. ..
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 110000 0000011122221 11111 12356679999999776666677777666443345556555544 44
Q ss_pred HHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHHHHhh
Q 045318 331 VASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL-PLAAKTLGGLL 396 (1388)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~~~l 396 (1388)
+...+ .....+++.++++++....+...+...+ .... .+.+..|++.++|. -.|+..+..++
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 43221 2235789999999999888877553222 1111 35678899999995 46777776554
No 112
>PRK05642 DNA replication initiation factor; Validated
Probab=97.84 E-value=0.00025 Score=76.37 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=89.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..+.|+|..|+|||.|++++++... ..-..++|++.. ++... .. .+.+.+++-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~------~~~~~--------------~~----~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLA------ELLDR--------------GP----ELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHH------HHHhh--------------hH----HHHHhhhhCC
Confidence 5688999999999999999987522 112345666532 22111 01 1222222222
Q ss_pred EEEEEeCCCCCC-hhhhhh-hcccccC-CCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChhhHHHHHHHc
Q 045318 291 FLLVLDDMWNDN-YGDWTS-LRLPFVA-GASGSKIIVTTRNQS---------VASMMGSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 291 ~LlVlDdv~~~~-~~~~~~-l~~~~~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
++|+||+.... ...|.. +...+.. ...|..||+|++... ..+.+....+++++++++++-.+++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 68899995331 134433 3322221 134677888887532 2222333467899999999999999866
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 359 SLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
+...+ ...+ +++..-|++++.|-.-++..+-
T Consensus 179 a~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 179 ASRRG-LHLT---DEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred HHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHH
Confidence 64322 2222 4778888999988765544433
No 113
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.84 E-value=0.00011 Score=93.81 Aligned_cols=207 Identities=14% Similarity=0.171 Sum_probs=118.6
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc-ccccCCceEEEEeCCccC---HHHHH
Q 045318 183 VHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM-VESHFDLKAWTCVSDDFD---AIKVT 258 (1388)
Q Consensus 183 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~---~~~~~ 258 (1388)
++||+.+.+.|...+..... +...|+.+.|..|||||+++++|.+-.. .+..|-...+-....+.. ..+.+
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~-----g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~ 76 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK-----GRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAF 76 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC-----CCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHH
Confidence 68999999999998865432 4567999999999999999999997521 112221111111122211 12333
Q ss_pred HHHHHHhc-------------------CC-----------------CCC-----CCcHH-----HHHHHHHhhc-CCceE
Q 045318 259 KAILRSIC-------------------MH-----------------TDA-----DDDLN-----SLQVKLKDGL-SRKKF 291 (1388)
Q Consensus 259 ~~i~~~l~-------------------~~-----------------~~~-----~~~~~-----~~~~~l~~~l-~~k~~ 291 (1388)
++++.++. .. ... ....+ .....+.... +.++.
T Consensus 77 r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~pl 156 (849)
T COG3899 77 RDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPL 156 (849)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCe
Confidence 44443331 10 000 00000 1122233333 35699
Q ss_pred EEEEeCCCCCChhhhhhhcccccCCC----CCcEE--EEEcCCh--hHHhhcCCCceEeCCCCChhhHHHHHHHcccCCC
Q 045318 292 LLVLDDMWNDNYGDWTSLRLPFVAGA----SGSKI--IVTTRNQ--SVASMMGSVSAYELKKLTDDDCRLVFTQHSLGTK 363 (1388)
Q Consensus 292 LlVlDdv~~~~~~~~~~l~~~~~~~~----~gs~i--ivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 363 (1388)
++|+||+...+....+-+........ ....| +.|.+.. .+.........+.+.||+..+...+..... +..
T Consensus 157 Vi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l-~~~ 235 (849)
T COG3899 157 VIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL-GCT 235 (849)
T ss_pred EEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh-CCc
Confidence 99999994444344433332222111 01123 3333332 222223334689999999999999998875 221
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCC
Q 045318 364 DFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGK 399 (1388)
Q Consensus 364 ~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~ 399 (1388)
. ....+....|+++.+|+|+.+.-+-..+...
T Consensus 236 ~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~ 267 (849)
T COG3899 236 K----LLPAPLLELIFEKTKGNPFFIEEFLKALYEE 267 (849)
T ss_pred c----cccchHHHHHHHHhcCCCccHHHHHHHHHhC
Confidence 1 1224678999999999999999888887653
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00043 Score=87.12 Aligned_cols=177 Identities=11% Similarity=0.075 Sum_probs=108.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-------------------
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD------------------- 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~------------------- 241 (1388)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-.....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-------i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-------INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPG 87 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCC
Confidence 468999999999999987632 224678999999999999999987532111110
Q ss_pred --ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHH---HHH-hhcCCceEEEEEeCCCCCChhhhhhhcccccC
Q 045318 242 --LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQV---KLK-DGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVA 315 (1388)
Q Consensus 242 --~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~---~l~-~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~ 315 (1388)
.++++..... ..++++.+ .+. .-..+++-++|||+++......+..|...+..
T Consensus 88 ~~dv~eidaas~---------------------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE 146 (824)
T PRK07764 88 SLDVTEIDAASH---------------------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE 146 (824)
T ss_pred CCcEEEeccccc---------------------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC
Confidence 0111111111 12222222 111 11235566899999988777777777777765
Q ss_pred CCCCcEEEEEc-CChhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 316 GASGSKIIVTT-RNQSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 316 ~~~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
-...+.+|++| ....+...+ .....|++..++.++..+.+.+.+-. ...... .+....|++.++|.+..+
T Consensus 147 pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~-EGv~id---~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 147 PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ-EGVPVE---PGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH-cCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 55566665555 444444322 23367999999999988777765421 111111 245678899999977443
No 115
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00057 Score=71.19 Aligned_cols=173 Identities=18% Similarity=0.168 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+|+|.++-++++.=.+....... ..+-.|.++|++|.||||||.-+++.-.+. + -++......-..-+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~---e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDlaa 96 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG---EALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDLAA 96 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC---CCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhHHH
Confidence 579999998888877766543333 566789999999999999999999863222 2 1111111111111112
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccC--------CCCC-----------cE
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVA--------GASG-----------SK 321 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~--------~~~g-----------s~ 321 (1388)
|+..+. +.=++.+|.++.-....-+-+...+-+ .+++ +-
T Consensus 97 iLt~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 97 ILTNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HHhcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 222221 122344455543221111111111111 1222 34
Q ss_pred EEEEcCChhHHhhcCC--CceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 045318 322 IIVTTRNQSVASMMGS--VSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLA 388 (1388)
Q Consensus 322 iivTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 388 (1388)
|=.|||.-.+...... .-+.+++--+.+|-.++..+.+-- -+.... ++-+.+|+++..|-|--
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~---~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEID---EEAALEIARRSRGTPRI 219 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCC---hHHHHHHHHhccCCcHH
Confidence 5568887554433221 135778888899988888887621 111122 35689999999999943
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.76 E-value=0.00018 Score=75.61 Aligned_cols=192 Identities=20% Similarity=0.181 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEE-EEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAW-TCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w-v~~s~~~~~~~~~~ 259 (1388)
.+++|-+..+..+.+.+.. ....+...+|++|.|||+-|.+.+....-..-|.+++- .++|..-... +.+
T Consensus 36 de~~gQe~vV~~L~~a~~~--------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh
Confidence 4688999999999988876 24578889999999999999888876433455554433 2333332211 111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHhhc--CCce-EEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hhHHhhc
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKDGL--SRKK-FLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QSVASMM 335 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~ 335 (1388)
+ ...+...+.....+.. ..++ -.||||+++.-..+.|..+...+......++.|..+.. ..+....
T Consensus 107 ~----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 E----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred h----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 1 1111111111111010 0123 37899999888888999998888776666765544433 2222111
Q ss_pred -CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHHh
Q 045318 336 -GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG-LPLAAKTLGGL 395 (1388)
Q Consensus 336 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~~~ 395 (1388)
.....|..++|.+++...-+...+-..+ ...+ .+..+.|++.++| +--|+.++-++
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~d---~~al~~I~~~S~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEG-VDID---DDALKLIAKISDGDLRRAITTLQSL 234 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhC-CCCC---HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 1124688999999998887777663222 2222 3567889999999 45565555443
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00093 Score=81.57 Aligned_cols=192 Identities=15% Similarity=0.186 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccccc---CC----ceEEEEeCCccC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESH---FD----LKAWTCVSDDFD 253 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F~----~~~wv~~s~~~~ 253 (1388)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++..--... +. |.. +....++
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-------l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~--~~~~~~D 88 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-------ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE--NVNNSLD 88 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH--hhcCCCc
Confidence 468899999999999886542 2356679999999999999999864211100 00 000 0000000
Q ss_pred HHHHHHHHHHHhcCCC-CCCCcHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEE-EEEcCChh
Q 045318 254 AIKVTKAILRSICMHT-DADDDLNSLQVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKI-IVTTRNQS 330 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~i-ivTtR~~~ 330 (1388)
.. .+.... ....++.++.+.+... ..+++-++|+|++..-....+..+...+-.....+.+ ++|++...
T Consensus 89 vi--------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~K 160 (725)
T PRK07133 89 II--------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHK 160 (725)
T ss_pred EE--------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhh
Confidence 00 000000 0011122222222211 2356668999999776666777777666544445554 45555544
Q ss_pred HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHH
Q 045318 331 VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTLG 393 (1388)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~ 393 (1388)
+... ......+++.+++.++..+.+...+-..+ .... .+.++.|++.++|-+ .|+..+-
T Consensus 161 Ll~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 161 IPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-ISYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred hhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 4432 22336899999999998887776542211 1111 245788999999966 4444443
No 118
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00078 Score=78.81 Aligned_cols=186 Identities=12% Similarity=0.166 Sum_probs=105.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc------ccCCceE-EEEeCCccC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE------SHFDLKA-WTCVSDDFD 253 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~~-wv~~s~~~~ 253 (1388)
.+++|.+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+.+...-. ..|...+ -+......+
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 89 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS 89 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC
Confidence 46789999999999998653 223578899999999999999997752110 1121111 111011111
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEc-CChhHH
Q 045318 254 AIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTT-RNQSVA 332 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-R~~~v~ 332 (1388)
..+ .+++++++.. .-..+++-++|+|++.......+..+...+......+.+|++| +...+.
T Consensus 90 ~~~-i~~l~~~~~~----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 90 VDD-IRNLIDQVRI----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred HHH-HHHHHHHHhh----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 111 1111111110 0112455579999996655455666655554333445555555 332332
Q ss_pred hh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 045318 333 SM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTLGG 394 (1388)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~ 394 (1388)
.. ......++..++++++....+...+...+. ... .+.+..+++.++|.+- |+..+-.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFE---DDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 21 222357899999999988888776532221 111 3667888999999654 4444433
No 119
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.75 E-value=0.00088 Score=80.90 Aligned_cols=187 Identities=15% Similarity=0.099 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-------------------
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD------------------- 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~------------------- 241 (1388)
.+++|.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++...-....+
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPG 85 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCC
Confidence 46899999999999998753 2234578999999999999999987521111000
Q ss_pred --ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCC
Q 045318 242 --LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGAS 318 (1388)
Q Consensus 242 --~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~ 318 (1388)
.++.+..+.... .+++.++...+... ..+++-++|+|++..-.......+...+.....
T Consensus 86 ~~dvieidaas~~g------------------vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~ 147 (584)
T PRK14952 86 SIDVVELDAASHGG------------------VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPE 147 (584)
T ss_pred CceEEEeccccccC------------------HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCC
Confidence 011111111111 11122222222111 134556899999987776777777766665445
Q ss_pred CcEEEE-EcCChhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHHh
Q 045318 319 GSKIIV-TTRNQSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTLGGL 395 (1388)
Q Consensus 319 gs~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~ 395 (1388)
...+|+ ||....+... ......+++.+++.++..+.+.+.+-..+ ...+ .+....|++.++|-+ -|+..+-.+
T Consensus 148 ~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i~i~---~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 148 HLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-VVVD---DAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred CeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 665555 4444444432 22236799999999998877776543222 1111 345678899999976 455555444
Q ss_pred h
Q 045318 396 L 396 (1388)
Q Consensus 396 l 396 (1388)
+
T Consensus 224 ~ 224 (584)
T PRK14952 224 L 224 (584)
T ss_pred H
Confidence 4
No 120
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00052 Score=81.18 Aligned_cols=167 Identities=11% Similarity=0.066 Sum_probs=99.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.-+.|+|..|+|||+|++++++.......-..++++ +..++...+...+.... + ....+++.++ ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~------~-~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH------K-EIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh------h-HHHHHHHHhc-cC
Confidence 457899999999999999999852211111123333 34566677766664311 1 1223333333 33
Q ss_pred EEEEEeCCCCCCh-hhh-hhhcccccC-CCCCcEEEEEcCCh---------hHHhhcCCCceEeCCCCChhhHHHHHHHc
Q 045318 291 FLLVLDDMWNDNY-GDW-TSLRLPFVA-GASGSKIIVTTRNQ---------SVASMMGSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 291 ~LlVlDdv~~~~~-~~~-~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-++++++++.++-.+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 4889999954321 122 333322221 13455788887542 23334445567899999999999999988
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 359 SLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
+-..+ .. ..--+++..-|++.++|.|-.+..+.
T Consensus 288 ~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 288 IKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 73221 10 01224778899999999986655443
No 121
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.73 E-value=0.00044 Score=85.19 Aligned_cols=195 Identities=11% Similarity=0.156 Sum_probs=109.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|-+.-++.+..++... .-...+.++|+.|+||||+|+.+++.......+. ....++.-...+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~ 82 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRA 82 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHH
Confidence 47899999999998888653 2235668999999999999999987521111000 0001111112222
Q ss_pred HHHHhcC-----CCCCCCcHHHHH---HHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hh
Q 045318 261 ILRSICM-----HTDADDDLNSLQ---VKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QS 330 (1388)
Q Consensus 261 i~~~l~~-----~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~ 330 (1388)
|...... ........+++. ..+.. -..+++-++|+|++..-.....+.+...+......+.+|++|.+ ..
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 2211110 000111222222 22211 11255678999999665555566676665544456666665543 33
Q ss_pred HHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 331 VASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
+.... .....++++.++.++....+.+.+...+ .... .+.+..|++.++|.+-.+...
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~eg-l~i~---~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEG-INLE---PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 33221 2235788999999998888777653222 1111 356788999999988655443
No 122
>CHL00181 cbbX CbbX; Provisional
Probab=97.72 E-value=0.00094 Score=73.99 Aligned_cols=133 Identities=14% Similarity=0.082 Sum_probs=72.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..+.++|++|+||||+|+.+++.....+.-...-|+.++.. ++ .....+.. .......+.+. .+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~----~l----~~~~~g~~-----~~~~~~~l~~a-~g-- 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD----DL----VGQYIGHT-----APKTKEVLKKA-MG-- 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH----HH----HHHHhccc-----hHHHHHHHHHc-cC--
Confidence 45789999999999999999874211111111224555421 22 22221111 11122223322 22
Q ss_pred EEEEEeCCCCC---------ChhhhhhhcccccCCCCCcEEEEEcCChhHHhhc--------CCCceEeCCCCChhhHHH
Q 045318 291 FLLVLDDMWND---------NYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMM--------GSVSAYELKKLTDDDCRL 353 (1388)
Q Consensus 291 ~LlVlDdv~~~---------~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~ 353 (1388)
-+|++|++..- ..+....+...+.+...+.+||+++....+.... .....+.+++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48999999542 1112233333343444556777777654432211 122478999999999999
Q ss_pred HHHHcc
Q 045318 354 VFTQHS 359 (1388)
Q Consensus 354 lf~~~~ 359 (1388)
++...+
T Consensus 204 I~~~~l 209 (287)
T CHL00181 204 IAKIML 209 (287)
T ss_pred HHHHHH
Confidence 888776
No 123
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0014 Score=78.11 Aligned_cols=184 Identities=14% Similarity=0.117 Sum_probs=106.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc--c-----------------ccCC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV--E-----------------SHFD 241 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~--~-----------------~~F~ 241 (1388)
..++|-+.-++.+..++.... -...+.++|+.|+||||+|+.++....- . +.|.
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~ 88 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFP 88 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCC
Confidence 468899999999999986532 2345678999999999999998874210 0 0011
Q ss_pred ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCc
Q 045318 242 LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGS 320 (1388)
Q Consensus 242 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs 320 (1388)
...++..+..... ++...+.+.+.. -..+++-++|+|+++.-.....+.+...+.......
T Consensus 89 d~~eidaas~~gv------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~ 150 (486)
T PRK14953 89 DLIEIDAASNRGI------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRT 150 (486)
T ss_pred cEEEEeCccCCCH------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCe
Confidence 1112211111111 111222222211 123566799999997665555666666655444455
Q ss_pred EEEEEc-CChhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 321 KIIVTT-RNQSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 321 ~iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
.+|++| +...+... ......+.+.+++.++....+...+-..+ .... .+.+..|++.++|.+-.+....
T Consensus 151 v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~id---~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 151 IFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-IEYE---EKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 555544 44333322 22235789999999998877776552222 1111 2557788999999765444433
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.68 E-value=0.001 Score=80.91 Aligned_cols=202 Identities=12% Similarity=0.143 Sum_probs=108.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEE-eCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTC-VSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-~s~~~~~~~~~~ 259 (1388)
.+++|-+..++.+..++..+. -...+.++|+.|+||||+|+.+.+...-...++...|-. +......-..-+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-------i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~ 88 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-------VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCR 88 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHH
Confidence 468999999999888886532 224578999999999999998887532211111011110 000000000111
Q ss_pred HHHHHhc-----CCCCCCCcHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEE-EcCCh
Q 045318 260 AILRSIC-----MHTDADDDLNSLQVKLKDG----LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIV-TTRNQ 329 (1388)
Q Consensus 260 ~i~~~l~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iiv-TtR~~ 329 (1388)
.+...-. ........++++...+... ..+++-++|+|+++.-....++.+...+......+.+|+ |++..
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 1100000 0000111233333222111 234555789999977665567777766655444555554 54444
Q ss_pred hHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHH
Q 045318 330 SVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTLG 393 (1388)
Q Consensus 330 ~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~ 393 (1388)
.+... ......+++.++++++....+.+.+-..+ .... .+.+..|++.++|.. .|+..+-
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~---~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQID---ADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhCCCHHHHHHHHH
Confidence 44332 23346899999999998777766542211 1111 356788999999954 4444443
No 125
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.67 E-value=0.0013 Score=78.18 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=108.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc--------------------ccC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE--------------------SHF 240 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F 240 (1388)
.+++|-+..++.+...+... .-..+..++|+.|+||||+|+.+.+..--. .|+
T Consensus 14 deiiGqe~v~~~L~~~I~~g-------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~ 86 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI 86 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC
Confidence 46899999999999888653 223566899999999999999887642100 011
Q ss_pred CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhhhhhcccccCC
Q 045318 241 DLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD----GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG 316 (1388)
Q Consensus 241 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~ 316 (1388)
+ ++++..+... ..+++.+.+.. -..+++-++|+|++..-..+....+...+-..
T Consensus 87 d-v~eldaas~~---------------------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp 144 (535)
T PRK08451 87 D-IIEMDAASNR---------------------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP 144 (535)
T ss_pred e-EEEecccccc---------------------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc
Confidence 1 1111111111 12333322221 11245668999999777666677776666554
Q ss_pred CCCcEEEEEcCCh-hHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 317 ASGSKIIVTTRNQ-SVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 317 ~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
...+++|++|.+. .+... ......+++.+++.++..+.+.+.+-..+ .... .+.++.|++.++|.+--+..+
T Consensus 145 p~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i~i~---~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 145 PSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-VSYE---PEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 5567777666553 22211 12235799999999998887776542222 1111 356788999999988444333
No 126
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.67 E-value=0.00031 Score=89.25 Aligned_cols=157 Identities=14% Similarity=0.167 Sum_probs=84.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---cccccC-CceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDH---MVESHF-DLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~F-~~~~wv~~s~~~~~~~ 256 (1388)
+.++||+.+++++++.|..... .-+.++|++|+|||++|+.+++.. .+...+ +..+|.. +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~--------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~ 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK--------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC--------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH
Confidence 3689999999999998866422 235699999999999999999752 111111 3444421 1111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhc-CCceEEEEEeCCCCCC--------hhhhhhhcccccCCCCCcEEEEEcC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGL-SRKKFLLVLDDMWNDN--------YGDWTSLRLPFVAGASGSKIIVTTR 327 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~--------~~~~~~l~~~~~~~~~gs~iivTtR 327 (1388)
+.. +. .-..+.++....+.+.+ +.++.+|++|+++.-. ..+...+..+....+. -++|-+|.
T Consensus 249 l~a-------~~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~-i~~IgaTt 319 (731)
T TIGR02639 249 LLA-------GT-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK-LRCIGSTT 319 (731)
T ss_pred Hhh-------hc-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-eEEEEecC
Confidence 111 00 00112222222222222 2457899999995321 0111222222222222 34455544
Q ss_pred ChhHHhhc-------CCCceEeCCCCChhhHHHHHHHcc
Q 045318 328 NQSVASMM-------GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 328 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
.++....+ ..-..+++++++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 32221111 112578999999999999988654
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.67 E-value=0.0011 Score=72.09 Aligned_cols=168 Identities=16% Similarity=0.234 Sum_probs=105.6
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHH
Q 045318 179 NEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
-++.|.+|+.++..+..++...+. .-+..|-|+|-.|.|||.+++++.+.. .. ..+|+++-+.++...++
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~-----~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~ll 73 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSC-----TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILL 73 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCc-----ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHH
Confidence 356788999999999998865432 234566899999999999999999874 22 35899999999999999
Q ss_pred HHHHHHhcCCCCCCCc-------HHHHHHHHHh--hc--CCceEEEEEeCCCCCChhhhhhhccc----ccC-CCCCcEE
Q 045318 259 KAILRSICMHTDADDD-------LNSLQVKLKD--GL--SRKKFLLVLDDMWNDNYGDWTSLRLP----FVA-GASGSKI 322 (1388)
Q Consensus 259 ~~i~~~l~~~~~~~~~-------~~~~~~~l~~--~l--~~k~~LlVlDdv~~~~~~~~~~l~~~----~~~-~~~gs~i 322 (1388)
..|+.+......+... .......+.+ .. +++.++||||+++.- .+.+.+.-+ +.. -....-+
T Consensus 74 e~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~ 151 (438)
T KOG2543|consen 74 EKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIV 151 (438)
T ss_pred HHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceE
Confidence 9999999632222111 1222223333 11 256899999999442 232221111 000 1122334
Q ss_pred EEEcCChhHHh---hcCCC--ceEeCCCCChhhHHHHHHHc
Q 045318 323 IVTTRNQSVAS---MMGSV--SAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 323 ivTtR~~~v~~---~~~~~--~~~~l~~L~~~~~~~lf~~~ 358 (1388)
|+++-...-.. .++.. .++....-+.++..+++.+.
T Consensus 152 iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 152 IILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 44443322111 13333 35678888999999988764
No 128
>PRK06620 hypothetical protein; Validated
Probab=97.63 E-value=0.00094 Score=70.53 Aligned_cols=134 Identities=18% Similarity=0.117 Sum_probs=78.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
+.+.|+|++|+|||+|++.+++... . .++. ..+.. + +.. ...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 5689999999999999999887531 1 1111 00000 0 001 122
Q ss_pred EEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh-------HHhhcCCCceEeCCCCChhhHHHHHHHcccCCC
Q 045318 291 FLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS-------VASMMGSVSAYELKKLTDDDCRLVFTQHSLGTK 363 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 363 (1388)
-++++||+..-.....-.+...+. ..|..||+|++... ..+.+...-+++++++++++-..++.+.+.. .
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~-~ 163 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI-S 163 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH-c
Confidence 478899995321111111211111 34668999987432 3333444558999999999988888776532 1
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHH
Q 045318 364 DFSNHQHLKEIGEEILKKCNGLPLA 388 (1388)
Q Consensus 364 ~~~~~~~~~~~~~~i~~~c~g~Pla 388 (1388)
....+ +++..-|++++.|---.
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPREYSK 185 (214)
T ss_pred CCCCC---HHHHHHHHHHccCCHHH
Confidence 11222 46778888888875433
No 129
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.63 E-value=0.0012 Score=80.89 Aligned_cols=180 Identities=12% Similarity=0.151 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc---------------------ccc
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV---------------------ESH 239 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~ 239 (1388)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+.....- ..+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-------l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-------LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 468999999999999987532 2356789999999999999888774210 112
Q ss_pred CCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCC
Q 045318 240 FDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASG 319 (1388)
Q Consensus 240 F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~g 319 (1388)
|+. ..+..++..++.++ ++++.++... - ..+++-++|+|++..-....++.+...+.....+
T Consensus 90 ~n~-~~ld~~~~~~vd~I-r~li~~~~~~---------------P-~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 90 YNI-HELDAASNNSVDDI-RNLIEQVRIP---------------P-QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred Cce-EEecccccCCHHHH-HHHHHHHhhC---------------c-ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 321 11222211111111 1111111100 0 1245558899999776666777777776654456
Q ss_pred cEEEE-EcCChhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 320 SKIIV-TTRNQSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 320 s~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
+.+|+ ||+...+... ......+++.++++++....+.+.+-..+ .... .+.+..|++.++|-.--+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHH
Confidence 66555 5454444433 23336799999999999888876552221 1111 256788999999966433
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.62 E-value=0.00015 Score=92.47 Aligned_cols=155 Identities=16% Similarity=0.209 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---cc-ccCCceEE-EEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM---VE-SHFDLKAW-TCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~-~~F~~~~w-v~~s~~~~~~ 255 (1388)
..++||+.+++++++.|..... .-+.++|.+|+||||+|+.+++... +. .-.+..+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~--------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~----- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ--------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL----- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc--------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-----
Confidence 4689999999999999876432 2346999999999999999997521 11 01123333 21111
Q ss_pred HHHHHHHHHhcCCCCCCCcH-HHHHHHHHhhc-CCceEEEEEeCCCCCC-------hhhhhhhcccccCCCCCcEEEEEc
Q 045318 256 KVTKAILRSICMHTDADDDL-NSLQVKLKDGL-SRKKFLLVLDDMWNDN-------YGDWTSLRLPFVAGASGSKIIVTT 326 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~-~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~l~~~~~~~~~gs~iivTt 326 (1388)
+........+. +++...+.+.- .+++.+|++|++..-. ..+-..+..+....+ .-++|-||
T Consensus 254 ---------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaT 323 (852)
T TIGR03345 254 ---------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAAT 323 (852)
T ss_pred ---------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEec
Confidence 00000001111 11222222221 2578999999985421 112112332332222 34566666
Q ss_pred CChhHHhhc-------CCCceEeCCCCChhhHHHHHHHc
Q 045318 327 RNQSVASMM-------GSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 327 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
...+....+ ..-..+.+++++.+++.+++...
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 554332211 12257999999999999997544
No 131
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0014 Score=80.34 Aligned_cols=196 Identities=11% Similarity=0.153 Sum_probs=108.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+++..--...... . ......-+..+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~ 83 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRA 83 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHH
Confidence 468899999999998887532 2245789999999999999999876221110000 0 001111111112
Q ss_pred HHHHhcC-----CCCCCCcHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hh
Q 045318 261 ILRSICM-----HTDADDDLNSLQVKLKDG----LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QS 330 (1388)
Q Consensus 261 i~~~l~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~ 330 (1388)
+...... .......++++.+.+... ..+++-++|+|+++.-....+..+...+......+.+|++|.+ ..
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 2111100 000112233332222111 1245568999999776656677777666544445555544443 33
Q ss_pred HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 331 VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
+... ......+++..++.++....+.+.+-..+ .... .+.+..|++.++|.+..+...
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg-i~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES-IEIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 22235788889999888777766542211 1111 245788999999987555443
No 132
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.60 E-value=0.0014 Score=77.75 Aligned_cols=183 Identities=14% Similarity=0.130 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc---------------------cc
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE---------------------SH 239 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---------------------~~ 239 (1388)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+.+...-. .+
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-------i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~ 89 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-------AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTS 89 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-------CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCC
Confidence 478999999999999886532 23567899999999999999997642110 01
Q ss_pred CCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCC
Q 045318 240 FDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGAS 318 (1388)
Q Consensus 240 F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~ 318 (1388)
++ .+++........+ ++.++.+.+.. ...+++-++|+|++..-.....+.+...+.....
T Consensus 90 ~d-~~~i~g~~~~gid------------------~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~ 150 (451)
T PRK06305 90 LD-VLEIDGASHRGIE------------------DIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQ 150 (451)
T ss_pred Cc-eEEeeccccCCHH------------------HHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCC
Confidence 11 1111111111111 11111111111 1135666899999966554455666666655445
Q ss_pred CcEEEEEcCC-hhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHH
Q 045318 319 GSKIIVTTRN-QSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTLG 393 (1388)
Q Consensus 319 gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~ 393 (1388)
...+|++|.. ..+... ......++++++++++....+.+.+-..+ ... -.+.+..|++.++|.+ .|+..+-
T Consensus 151 ~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i---~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 151 HVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IET---SREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred CceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6666666533 333222 22235799999999998887776542211 111 1356788999999965 4544443
No 133
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.59 E-value=1.2e-05 Score=85.56 Aligned_cols=226 Identities=19% Similarity=0.182 Sum_probs=114.7
Q ss_pred cccccccchHHH----HhhccCceeeEEEeCCcc----cccccc-------ccccCcccceeeccCcccc-----ccccc
Q 045318 547 TFSRHFLSDSVV----HMLLKLQCLRVLCLREYN----ICKISN-------TIGDLKHLRHLDLSETLIE-----TLPES 606 (1388)
Q Consensus 547 ~~~~~~l~~~~~----~~~~~l~~Lr~L~L~~~~----i~~lp~-------~i~~l~~Lr~L~L~~~~i~-----~lp~~ 606 (1388)
++++|.+...-. ..+.+.+.||.-+++.-. ..++|+ .+-..++|++||||+|.+. .+-+-
T Consensus 36 ~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~l 115 (382)
T KOG1909|consen 36 DLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEEL 115 (382)
T ss_pred eccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHH
Confidence 456666544322 333566677777777542 224443 3345568888888888654 23334
Q ss_pred hhcccccceeecCCCcchhhc-------------chhhcccCCCCeeecCCCCCcccCcC-----CCCCCCCCCCCCceE
Q 045318 607 VNTLYNLHTLLLESCSRLKKL-------------CADMGNLIKLRHLNNYNVPLLEGMPL-----RIGHLSCLQTLPYFV 668 (1388)
Q Consensus 607 i~~L~~L~~L~L~~~~~~~~l-------------p~~i~~L~~L~~L~l~~~~~~~~~p~-----~i~~L~~L~~L~~~~ 668 (1388)
|.+.+.|++|.|.+|..-..- -..++.-++||++..++|. +..-+. .+...+.|+++ .
T Consensus 116 l~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leev---r 191 (382)
T KOG1909|consen 116 LSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEV---R 191 (382)
T ss_pred HHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceE---E
Confidence 667888999999888432111 1123344566777666665 222221 12222222222 1
Q ss_pred eccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCc
Q 045318 669 VGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENL 748 (1388)
Q Consensus 669 ~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L 748 (1388)
+..+.+... ...+....+..+++|+.|+|..|-++.. .....-..+..+++|
T Consensus 192 ---------------------~~qN~I~~e--G~~al~eal~~~~~LevLdl~DNtft~e-----gs~~LakaL~s~~~L 243 (382)
T KOG1909|consen 192 ---------------------LSQNGIRPE--GVTALAEALEHCPHLEVLDLRDNTFTLE-----GSVALAKALSSWPHL 243 (382)
T ss_pred ---------------------EecccccCc--hhHHHHHHHHhCCcceeeecccchhhhH-----HHHHHHHHhcccchh
Confidence 111111111 1134455666777777777777655431 112223345555566
Q ss_pred ceEEEeccCCCC-----CCcccCCCCCCCccEEeeecCCCCCCCC-----CCCCCCCcceeeccCCc
Q 045318 749 KQLAIRGYGGAN-----FPIWLGDSTFSNLELLRFENCAMCTSLP-----SIGQLPALKHLSIIGMA 805 (1388)
Q Consensus 749 ~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~l~-----~l~~l~~L~~L~L~~~~ 805 (1388)
++|+++.+.... +-..+.. ..|+|+.|.+.+|.+...-. +....|.|+.|+|++|.
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al~~-~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDALKE-SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eeecccccccccccHHHHHHHHhc-cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 666665544321 1111222 25666667666665543211 34446666677776664
No 134
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=2e-06 Score=88.81 Aligned_cols=160 Identities=18% Similarity=0.192 Sum_probs=94.0
Q ss_pred CCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccc---cCCCCc
Q 045318 999 PCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARV---QLPPSL 1075 (1388)
Q Consensus 999 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~sL 1075 (1388)
+..|+.|.|.++.....+...+..-.+|+.|+|+.|+..+.........+++.|++|+++.|...+..-.. ...++|
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l 288 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL 288 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence 34566666666655555555555566777777777776666554444456777777777777655443211 234678
Q ss_pred cEEEeecCcCcccchhhhhhccCCCCCCCCCCCCccccccceeecCCCCCccc--ccCCCCCCcccCceeEecCCCcccc
Q 045318 1076 KLLHIQSCHDLRTLIDEDQISGMKKDGDIPSGSSSYTCLLERLHIEDCPSLTS--LFSLKGLPATLEDIKVKNCSKLLFL 1153 (1388)
Q Consensus 1076 ~~L~l~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~~~sL~~L~l~~c~~l~~l 1153 (1388)
+.|++++|.+--.. .++ ..+..-++.|..|++++|..++. +.....++- |++|.++.|-.+..-
T Consensus 289 ~~LNlsG~rrnl~~---sh~----------~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~-L~~lSlsRCY~i~p~ 354 (419)
T KOG2120|consen 289 TQLNLSGYRRNLQK---SHL----------STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY-LQHLSLSRCYDIIPE 354 (419)
T ss_pred hhhhhhhhHhhhhh---hHH----------HHHHHhCCceeeeccccccccCchHHHHHHhcch-heeeehhhhcCCChH
Confidence 88888887532110 011 11112222388888888887765 212234444 888999888765321
Q ss_pred -CCCCCCccccccEEeccCC
Q 045318 1154 -SKRGALPKVLKDLYIYECS 1172 (1388)
Q Consensus 1154 -~~~~~~~~~L~~L~l~~c~ 1172 (1388)
.-.....++|.+|++.+|-
T Consensus 355 ~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 355 TLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HeeeeccCcceEEEEecccc
Confidence 1122334889999998874
No 135
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.58 E-value=0.0006 Score=78.13 Aligned_cols=147 Identities=15% Similarity=0.086 Sum_probs=83.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|.+...+.+..++... .-..++.++|++|+||||+|+.+++.. ... ...+..+. .... ..+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-------~~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~~~-~i~~ 86 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-------RIPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CRID-FVRN 86 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-------CCCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-ccHH-HHHH
Confidence 56899999999999998643 234677789999999999999998852 221 22333333 1211 1111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhhhhhcccccCCCCCcEEEEEcCChhHH-hh-cCC
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVAGASGSKIIVTTRNQSVA-SM-MGS 337 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~-~~~ 337 (1388)
.+..+... ..+.+.+-++|+||+... .......+...+.....++++|+||...... .. ...
T Consensus 87 ~l~~~~~~---------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFAST---------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHHh---------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 11111000 001234557899999654 2222333433343334677888888653211 11 111
Q ss_pred CceEeCCCCChhhHHHHHH
Q 045318 338 VSAYELKKLTDDDCRLVFT 356 (1388)
Q Consensus 338 ~~~~~l~~L~~~~~~~lf~ 356 (1388)
...+.++..+.++..+++.
T Consensus 152 ~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred ceEEEeCCCCHHHHHHHHH
Confidence 2356777777777665544
No 136
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.57 E-value=0.0008 Score=74.22 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=80.2
Q ss_pred ccccchhhHHHHHHHHhc---C----CCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH
Q 045318 182 EVHGRDDDKKAIVELLLN---D----DLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~---~----~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (1388)
.++|.+..+++|.+.... . ..+....+....+.++|++|+||||+|+.+++.....+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888777666543211 0 000011134566789999999999999999874210111111122333221
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC--------hhhhhhhcccccCCCCCcEEEEEc
Q 045318 255 IKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN--------YGDWTSLRLPFVAGASGSKIIVTT 326 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~~~~~~~gs~iivTt 326 (1388)
++.. ...+. ........+.+. . .-+|++|++..-. ....+.+...+........+|+++
T Consensus 84 -~l~~----~~~g~-----~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLVG----EYIGH-----TAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhhh----hhccc-----hHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 11110 011122222222 2 2488999996421 122334444443333334556665
Q ss_pred CChhH----------HhhcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 327 RNQSV----------ASMMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 327 R~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
...+. .+.+ ...+++++++.++-.+++.+.+
T Consensus 151 ~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~ 191 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMV 191 (261)
T ss_pred CcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHH
Confidence 44322 1111 2458899999999999888766
No 137
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.57 E-value=5.3e-05 Score=56.26 Aligned_cols=35 Identities=43% Similarity=0.559 Sum_probs=27.4
Q ss_pred cccceeeccCccccccccchhcccccceeecCCCc
Q 045318 588 KHLRHLDLSETLIETLPESVNTLYNLHTLLLESCS 622 (1388)
Q Consensus 588 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~ 622 (1388)
++|++|++++|.|+.+|..+++|++|++|++++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 46888888888888888888888888888888874
No 138
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.55 E-value=0.001 Score=69.18 Aligned_cols=126 Identities=21% Similarity=0.240 Sum_probs=73.5
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 178 VNEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 178 ~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
+.-+.++|.|.+++.|++-...--.+ ....-|.+||..|+|||++++++.+...-++ .--|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G----~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG----LPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------ 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC----CCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH------
Confidence 34567999999999888643221111 2234567899999999999999997522222 111222211
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhhhhhcccccCC----CCCcEEEEEcCChhHH
Q 045318 258 TKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVAG----ASGSKIIVTTRNQSVA 332 (1388)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~----~~gs~iivTtR~~~v~ 332 (1388)
...++.++.+.++. +..||+|++||+.-+ .......+...+..+ .....|.+||..++..
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 22334444444543 367999999999432 234456666555432 2344556666555443
No 139
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.54 E-value=5.9e-05 Score=83.24 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=118.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF-DAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
..+.|.++|.|||||||++-.+.. ++..|..-.|..--.+. +...+.-.....++...... +.....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 457899999999999999988876 56667555554444444 44445555555565543221 122334566677
Q ss_pred CceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhhcCCCceEeCCCCChh-hHHHHHHHcccCCC-CC
Q 045318 288 RKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMMGSVSAYELKKLTDD-DCRLVFTQHSLGTK-DF 365 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~~~-~~ 365 (1388)
++|.++|+||-.+. .+.-..+...+..+...-.|+.|+|.... +....++.+.+|+.. ++.++|...+.... ..
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 89999999998332 12223344455555666789999987543 334456788888877 68888877653211 11
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCC
Q 045318 366 SNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGK 399 (1388)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~ 399 (1388)
.-...-......|.++..|.|++|...++..++-
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl 196 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL 196 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc
Confidence 1112224667899999999999999999888765
No 140
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.53 E-value=2e-05 Score=93.71 Aligned_cols=102 Identities=28% Similarity=0.324 Sum_probs=72.4
Q ss_pred HhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCC
Q 045318 559 HMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLR 638 (1388)
Q Consensus 559 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 638 (1388)
..+..++.|.+|++.+|.|..+...+..+.+|++|+|++|.|+.+. .+..+..|+.|++++|. +..+ ..+..+++|+
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~-~~~~~l~~L~ 165 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDI-SGLESLKSLK 165 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhc-cCCccchhhh
Confidence 3357788888888888888888666788888888888888888874 37777788888888874 4443 3566688888
Q ss_pred eeecCCCCCcccCcCC-CCCCCCCCCC
Q 045318 639 HLNNYNVPLLEGMPLR-IGHLSCLQTL 664 (1388)
Q Consensus 639 ~L~l~~~~~~~~~p~~-i~~L~~L~~L 664 (1388)
.+++++|.+ ..+... ...+.+++.+
T Consensus 166 ~l~l~~n~i-~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 166 LLDLSYNRI-VDIENDELSELISLEEL 191 (414)
T ss_pred cccCCcchh-hhhhhhhhhhccchHHH
Confidence 888888873 333322 2444444444
No 141
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.52 E-value=0.0019 Score=76.43 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=90.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccC--CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHF--DLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
...+.|+|+.|+|||+|++++++... ... ..+++++ ..++..++...+... ..+.. .+.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~--~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~~----~~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEIL--ENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEEF----KEKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH--HhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHHH----HHHHH
Confidence 35688999999999999999998632 222 2344543 334445555555321 22222 22232
Q ss_pred CceEEEEEeCCCCCChhh-h-hhhcccccC-CCCCcEEEEEcCC-hh--------HHhhcCCCceEeCCCCChhhHHHHH
Q 045318 288 RKKFLLVLDDMWNDNYGD-W-TSLRLPFVA-GASGSKIIVTTRN-QS--------VASMMGSVSAYELKKLTDDDCRLVF 355 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~-~-~~l~~~~~~-~~~gs~iivTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~lf 355 (1388)
+ .-+||+||+......+ + +.+...+.. ...|..||+|+.. .. +...+....++++++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 2388999996532111 1 222222211 1235568887764 21 2222333357899999999999999
Q ss_pred HHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 356 TQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
.+.+-..+ ...+ +++...|++.+.|..-.+
T Consensus 278 ~~~~~~~~-~~l~---~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 278 QKKAEEEG-LELP---DEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHcC-CCCC---HHHHHHHHHhcCCCHHHH
Confidence 98874321 1222 467788888888876543
No 142
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.52 E-value=0.00066 Score=79.20 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=96.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (1388)
...+.|+++.++++.+.+...-... ..-...+-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 3478999999999988764311100 00123456889999999999999999985 2222 233321
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhh-cCCceEEEEEeCCCCCC-----------hhhhhhhcccc---cC--CC
Q 045318 255 IKVTKAILRSICMHTDADDDLNSLQVKLKDG-LSRKKFLLVLDDMWNDN-----------YGDWTSLRLPF---VA--GA 317 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~---~~--~~ 317 (1388)
.++. ....+ +.......+.+. -.....+|++||++.-. ...+..+...+ .. ..
T Consensus 199 ~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111 11110 011111122222 23456899999996420 11111222221 11 12
Q ss_pred CCcEEEEEcCChhHHh-hc----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC
Q 045318 318 SGSKIIVTTRNQSVAS-MM----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL 385 (1388)
Q Consensus 318 ~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 385 (1388)
.+..||.||...+... .+ .-...+++...+.++..++|..+..+.. ....-+ ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~-~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMN-LADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCC-CCCcCC----HHHHHHHcCCC
Confidence 3567888887643222 11 1235789999999999999998763221 111222 34566666664
No 143
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.51 E-value=8.8e-06 Score=82.98 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=63.8
Q ss_pred hhccCceeeEEEeCCcccc-----ccccccccCcccceeeccCcccc----ccc-------cchhcccccceeecCCCcc
Q 045318 560 MLLKLQCLRVLCLREYNIC-----KISNTIGDLKHLRHLDLSETLIE----TLP-------ESVNTLYNLHTLLLESCSR 623 (1388)
Q Consensus 560 ~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~----~lp-------~~i~~L~~L~~L~L~~~~~ 623 (1388)
.+..+..+..+|||||.|. .+...|.+-.+|+.-+++.-... ++| ..+-++++|+..+||.|.+
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 3445778889999999886 34566777888999988864221 333 3456778999999999876
Q ss_pred hhhcchh----hcccCCCCeeecCCCC
Q 045318 624 LKKLCAD----MGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 624 ~~~lp~~----i~~L~~L~~L~l~~~~ 646 (1388)
-...|+. |.+-+.|.||.+++|.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC
Confidence 5555544 5677889999999987
No 144
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0018 Score=79.33 Aligned_cols=197 Identities=13% Similarity=0.152 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|.+.-++.+..++.... -...+.++|+.|+||||+|+.+.+...-....+. ...+.-..-..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-------~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~ 81 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-------VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVE 81 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHH
Confidence 478999999999999886532 2356689999999999999999875211110000 00000000000
Q ss_pred HHHH-------hcCC-CCCCCcHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEE-EcCChh
Q 045318 261 ILRS-------ICMH-TDADDDLNSLQVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIV-TTRNQS 330 (1388)
Q Consensus 261 i~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iiv-TtR~~~ 330 (1388)
|... +.+. ....+++.++...+... ..+++-++|+|+++.-+......+...+-.....+.+|+ ||....
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 0000 0000 00011222222222111 234556899999977665666677666654445566654 544444
Q ss_pred HHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHHh
Q 045318 331 VASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP-LAAKTLGGL 395 (1388)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~ 395 (1388)
+.... .....+++++++.++....+...+-. ...... .+....|++.++|.. .|+..+-.+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~-egi~i~---~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQ-EGISIS---DAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH-hCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44322 22357889999998887776654321 111111 356778999999965 555554333
No 145
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.47 E-value=0.00045 Score=88.85 Aligned_cols=155 Identities=15% Similarity=0.143 Sum_probs=85.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---ccccC-CceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM---VESHF-DLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~~~wv~~s~~~~~~~ 256 (1388)
..++||+++++++++.|..... .-+.++|++|+|||++|+.++.... +.... +..+|. + +...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~--------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~ 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK--------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGL 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc--------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHH
Confidence 3589999999999999976432 2346999999999999999987521 11111 344553 1 2211
Q ss_pred HHHHHHHHhcCCCCCCCcHHH-HHHHHHhhcCCceEEEEEeCCCCCC-------hhhhhhhcccccCCCCCcEEEEEcCC
Q 045318 257 VTKAILRSICMHTDADDDLNS-LQVKLKDGLSRKKFLLVLDDMWNDN-------YGDWTSLRLPFVAGASGSKIIVTTRN 328 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~-------~~~~~~l~~~~~~~~~gs~iivTtR~ 328 (1388)
++ .+... ..+.++ +...+.+.-..++.+|++|++..-. ..+...+..+....+ .-++|.+|..
T Consensus 246 l~-------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~ 316 (821)
T CHL00095 246 LL-------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTL 316 (821)
T ss_pred Hh-------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCH
Confidence 11 11111 112222 2222222223568899999994210 011222222222222 2455666655
Q ss_pred hhHHhhc-------CCCceEeCCCCChhhHHHHHHH
Q 045318 329 QSVASMM-------GSVSAYELKKLTDDDCRLVFTQ 357 (1388)
Q Consensus 329 ~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~ 357 (1388)
++..... ....++.+...+.++...++..
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 4432211 1224678888999998887764
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0045 Score=75.14 Aligned_cols=193 Identities=12% Similarity=0.055 Sum_probs=109.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|-+.-++.+..++... .-...+.++|+.|+||||+|+.+++..--...... ..+....+- +.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~ 81 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KS 81 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HH
Confidence 47899999999999998753 22356889999999999999999875211110000 000000000 01
Q ss_pred HHHHhc-----CCCCCCCcHHHHHHHH---Hh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hh
Q 045318 261 ILRSIC-----MHTDADDDLNSLQVKL---KD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QS 330 (1388)
Q Consensus 261 i~~~l~-----~~~~~~~~~~~~~~~l---~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~ 330 (1388)
|...-. .........+++.... .. -..+++-++|+|++..-....+..+...+......+.+|.+|.. ..
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 100000 0000112223322221 11 12356668999999776666677777766654456666665543 33
Q ss_pred HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 331 VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
+... ......++..+++.++..+.+.+.+...+ ... -.+.+..|++.++|.+-.+..
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~i---d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKY---EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3322 22235789999999998888877653222 111 135677899999997754433
No 147
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.46 E-value=0.0012 Score=73.28 Aligned_cols=132 Identities=13% Similarity=0.063 Sum_probs=71.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceE
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKF 291 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 291 (1388)
-|.++|++|+||||+|+.++......+......|+.++. .++ +..+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcccc-----hHHHHHHHHHc---cCc
Confidence 477999999999999987776421111111123454442 122 22222211 11122223222 235
Q ss_pred EEEEeCCCCC---------ChhhhhhhcccccCCCCCcEEEEEcCChhHHhhcC--------CCceEeCCCCChhhHHHH
Q 045318 292 LLVLDDMWND---------NYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMMG--------SVSAYELKKLTDDDCRLV 354 (1388)
Q Consensus 292 LlVlDdv~~~---------~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~~l 354 (1388)
+|++|++..- ....+..+...+.....+.+||+++.......... ....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999521 11223444444444445667777775432221111 124689999999999999
Q ss_pred HHHcc
Q 045318 355 FTQHS 359 (1388)
Q Consensus 355 f~~~~ 359 (1388)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88775
No 148
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=1e-05 Score=83.76 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=47.1
Q ss_pred CCCccceeecccCCCCCCcc--CCCCCCCcCcEeecCCCCCcc--CCCCCCCCccceeeeccCcc------hHHHhcc
Q 045318 1299 LPASLTFLWIDNFPNLLRLS--SIENLTSLQFLRFRNCPKLEY--FPENGLPTSLLRLQIIACPL------MKERCKK 1366 (1388)
Q Consensus 1299 ~~~sL~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~--l~~~~l~~sL~~L~i~~c~~------L~~~~~~ 1366 (1388)
-.+.|..|||++|..++.-. .+..|+.|++|.++.|..+-. +-+-...|+|.+|++.+|-. +++.|.+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~ 388 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSH 388 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcc
Confidence 34677777777777777633 788899999999999965431 11223357999999999852 5565554
No 149
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.37 E-value=0.0047 Score=75.36 Aligned_cols=191 Identities=15% Similarity=0.176 Sum_probs=105.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+.+...-...-+ ..+.+.-..-+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~ 81 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKA 81 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHH
Confidence 478999999999999987642 235677899999999999999976421111000 000000001111
Q ss_pred HHHHhcC-----CCCCCCcHHH---HHHHHHh-hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEE-EcCChh
Q 045318 261 ILRSICM-----HTDADDDLNS---LQVKLKD-GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIV-TTRNQS 330 (1388)
Q Consensus 261 i~~~l~~-----~~~~~~~~~~---~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iiv-TtR~~~ 330 (1388)
|...... ........++ +...+.. -..+++-++|+|++..-....+..+...+........+|+ ||....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 1100000 0001112222 2222221 1235666889999977665667777666554434555554 444433
Q ss_pred HHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 331 VASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 331 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
+.... .....++..+++.++....+...+-..+ .... .+....|++.++|-+-.+
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEG-IEYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHH
Confidence 33221 2235688999999998887776552211 1111 355778889999877544
No 150
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.37 E-value=0.0014 Score=82.06 Aligned_cols=157 Identities=15% Similarity=0.200 Sum_probs=87.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---cccc-CCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM---VESH-FDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~wv~~s~~~~~~~ 256 (1388)
..++||+.+++++++.|..... .-+.++|++|+|||++|+.++.... +... .++.+|.. +...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~--------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK--------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC--------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH
Confidence 3589999999999998876422 2345899999999999999987421 1111 24445421 1111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhc-CCceEEEEEeCCCCC--------ChhhhhhhcccccCCCCCcEEEEEcC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGL-SRKKFLLVLDDMWND--------NYGDWTSLRLPFVAGASGSKIIVTTR 327 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~l~~~~~~~~~gs~iivTtR 327 (1388)
+ +.+.. -..+.++....+.+.+ +.+..+|++|++..- ...+...+..++...+ .-+||-+|.
T Consensus 253 l-------laG~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt 323 (758)
T PRK11034 253 L-------LAGTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTT 323 (758)
T ss_pred H-------hcccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCC
Confidence 1 11110 0112222222222222 345679999999531 1122333333333332 345565555
Q ss_pred ChhHHhhc-------CCCceEeCCCCChhhHHHHHHHcc
Q 045318 328 NQSVASMM-------GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 328 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
.++....+ ..-..+.+++.+.+++.+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 44432211 112579999999999999988653
No 151
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.36 E-value=0.0021 Score=76.14 Aligned_cols=157 Identities=18% Similarity=0.121 Sum_probs=91.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCC-ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFD-LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1388)
.-+.|+|..|+|||+|++++++... +.+.+ .++|++ ..++..++...+... ..++ +.+..+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~------~~~f~~~~~~~~~~~-----~~~~----f~~~~~~~ 194 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYIT------SEKFLNDLVDSMKEG-----KLNE----FREKYRKK 194 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEE------HHHHHHHHHHHHhcc-----cHHH----HHHHHHhc
Confidence 4589999999999999999998632 22222 345554 345556665555321 2222 22333334
Q ss_pred eEEEEEeCCCCCC-hhhh-hhhcccccC-CCCCcEEEEEcC-Chh--------HHhhcCCCceEeCCCCChhhHHHHHHH
Q 045318 290 KFLLVLDDMWNDN-YGDW-TSLRLPFVA-GASGSKIIVTTR-NQS--------VASMMGSVSAYELKKLTDDDCRLVFTQ 357 (1388)
Q Consensus 290 ~~LlVlDdv~~~~-~~~~-~~l~~~~~~-~~~gs~iivTtR-~~~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (1388)
.-+||+||+.... ...+ +.+...+.. ...|..||+||. .+. +...+....++++++.+.+.-.+++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 5589999996421 1111 222222211 123457888874 322 112233445789999999999999988
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHcCCChH
Q 045318 358 HSLGTKDFSNHQHLKEIGEEILKKCNGLPL 387 (1388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 387 (1388)
++-.. ....+ +++...|++.+.|.--
T Consensus 275 ~~~~~-~~~l~---~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 275 MLEIE-HGELP---EEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHhc-CCCCC---HHHHHHHHhccccCHH
Confidence 87322 11222 3677888888887543
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.006 Score=68.48 Aligned_cols=198 Identities=15% Similarity=0.137 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-------------cccCCceEEEE
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV-------------ESHFDLKAWTC 247 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~ 247 (1388)
.+++|-+..++.+...+..+. -.....++|+.|+||+++|..+.+..-- ...+....|+.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~ 76 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVE 76 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEe
Confidence 368899999999999986642 2367889999999999999887764110 11122234442
Q ss_pred eCCccCHHHHHHHHHHHhcC--CCCCCCcHHHH---HHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcE
Q 045318 248 VSDDFDAIKVTKAILRSICM--HTDADDDLNSL---QVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSK 321 (1388)
Q Consensus 248 ~s~~~~~~~~~~~i~~~l~~--~~~~~~~~~~~---~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ 321 (1388)
-....+...+-...++..+. .......++++ ...+... ..+++-++|+|++..-+......+...+-......-
T Consensus 77 p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~f 156 (314)
T PRK07399 77 PTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTL 156 (314)
T ss_pred ccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeE
Confidence 11000000011111112211 11112223332 2222211 235677899999977666666666666544333333
Q ss_pred EEEEcCChhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 322 IIVTTRNQSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 322 iivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
|++|++...+.... .....+++.++++++..+.+....... . .......++..++|.|..+...
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~----~---~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE----I---LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc----c---chhHHHHHHHHcCCCHHHHHHH
Confidence 44444444443322 233689999999999999988764111 0 0111357899999999666543
No 153
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.32 E-value=0.00041 Score=67.81 Aligned_cols=21 Identities=43% Similarity=0.468 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 045318 213 IPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~ 233 (1388)
|.|+|++|+||||+|+.++++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999987
No 154
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.32 E-value=4.3e-05 Score=90.77 Aligned_cols=98 Identities=32% Similarity=0.406 Sum_probs=77.1
Q ss_pred cCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 563 KLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
.+..+..+.+..|.|..+-..++.+++|.+|++.+|.|+.+...+..+.+|++|++++|. +..+ .++..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-cchhhccchhhhee
Confidence 455666777888988886677899999999999999999997779999999999999984 5554 35888889999999
Q ss_pred CCCCCcccCcCCCCCCCCCCCC
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
.+|.+ ..+ .++..+.+|+.+
T Consensus 148 ~~N~i-~~~-~~~~~l~~L~~l 167 (414)
T KOG0531|consen 148 SGNLI-SDI-SGLESLKSLKLL 167 (414)
T ss_pred ccCcc-hhc-cCCccchhhhcc
Confidence 99983 332 234445555555
No 155
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.30 E-value=0.002 Score=83.19 Aligned_cols=157 Identities=14% Similarity=0.134 Sum_probs=84.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVES----HFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~ 256 (1388)
..++||+.++++++..|..... .-+.++|++|+|||++|+.++....-.. .....+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~--------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~ 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK--------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGA 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC--------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHH
Confidence 4599999999999999876422 2345899999999999999987521110 012333321 1111
Q ss_pred HHHHHHHHhcCCCCCCCcHH-HHHHHHHhhcC-CceEEEEEeCCCCCC-------hhhhhhhcccccCCCCCcEEEEEcC
Q 045318 257 VTKAILRSICMHTDADDDLN-SLQVKLKDGLS-RKKFLLVLDDMWNDN-------YGDWTSLRLPFVAGASGSKIIVTTR 327 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l~-~k~~LlVlDdv~~~~-------~~~~~~l~~~~~~~~~gs~iivTtR 327 (1388)
++. +.. ...+.+ .+...+.+.-+ +++.+|++|++..-. ..+...+..+....+ .-++|.+|.
T Consensus 240 l~a-------~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt 310 (852)
T TIGR03346 240 LIA-------GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATT 310 (852)
T ss_pred Hhh-------cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCc
Confidence 110 000 001122 22222222212 468999999995321 011222333332222 235555555
Q ss_pred ChhHHhhc-------CCCceEeCCCCChhhHHHHHHHcc
Q 045318 328 NQSVASMM-------GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 328 ~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
.++....+ ..-.++.+...+.++..+++....
T Consensus 311 ~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 311 LDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 44432211 122468899999999999887653
No 156
>PF14516 AAA_35: AAA-like domain
Probab=97.30 E-value=0.011 Score=67.56 Aligned_cols=201 Identities=13% Similarity=0.066 Sum_probs=117.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc-----cCH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD-----FDA 254 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~~ 254 (1388)
.+..|+|...-+++.+.+..+ ...+.|.|+-.+|||+|...+.+..+.. .| .++++.+..- .+.
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~---------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP---------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC---------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCH
Confidence 345678886667777777543 2588999999999999999998764332 33 4557776542 245
Q ss_pred HHHHHHHHHHhc----CCCC-------CCCcHHHHHHHHHhhc---CCceEEEEEeCCCCCCh-----hhhhhhcccccC
Q 045318 255 IKVTKAILRSIC----MHTD-------ADDDLNSLQVKLKDGL---SRKKFLLVLDDMWNDNY-----GDWTSLRLPFVA 315 (1388)
Q Consensus 255 ~~~~~~i~~~l~----~~~~-------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~-----~~~~~l~~~~~~ 315 (1388)
.+.++.++..+. .... ...........+.+++ .+++.+|++|+|+.... .++-.+.+.+..
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 555555554443 3221 0112223333444432 26899999999965321 122222212111
Q ss_pred C-C----CCcEEEEEcCChhH--Hhh-----cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcC
Q 045318 316 G-A----SGSKIIVTTRNQSV--ASM-----MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCN 383 (1388)
Q Consensus 316 ~-~----~gs~iivTtR~~~v--~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~ 383 (1388)
. . ...-.+|....... ... +.....++|++++.+|...|..++-.. ..+ ...++|...+|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~---~~~~~l~~~tg 230 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQ---EQLEQLMDWTG 230 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCH---HHHHHHHHHHC
Confidence 1 0 11112222222111 111 122247899999999999998876311 111 23889999999
Q ss_pred CChHHHHHHHHhhcCC
Q 045318 384 GLPLAAKTLGGLLRGK 399 (1388)
Q Consensus 384 g~Plai~~~~~~l~~~ 399 (1388)
|+|.-+..++..+...
T Consensus 231 GhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 231 GHPYLVQKACYLLVEE 246 (331)
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999998764
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0025 Score=72.37 Aligned_cols=135 Identities=19% Similarity=0.150 Sum_probs=82.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSR 288 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1388)
....+.|||..|.|||.|++++.+. ...+......+.++ .++...+++..+.. . -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~-----~----~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRD-----N----EMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHh-----h----hHHHHHHhh--
Confidence 4578999999999999999999996 34444333333333 33344444444432 1 122344444
Q ss_pred ceEEEEEeCCCCCCh-hhh-hhhcccccC-CCCCcEEEEEcCC---------hhHHhhcCCCceEeCCCCChhhHHHHHH
Q 045318 289 KKFLLVLDDMWNDNY-GDW-TSLRLPFVA-GASGSKIIVTTRN---------QSVASMMGSVSAYELKKLTDDDCRLVFT 356 (1388)
Q Consensus 289 k~~LlVlDdv~~~~~-~~~-~~l~~~~~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~ 356 (1388)
.-=++++||++.-.. +.| +.+...|.. ...|-.||+|++. +.+.+.+...-++++++.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 333889999965221 112 222222221 1234489999964 3444556666789999999999999998
Q ss_pred Hccc
Q 045318 357 QHSL 360 (1388)
Q Consensus 357 ~~~~ 360 (1388)
+++.
T Consensus 255 kka~ 258 (408)
T COG0593 255 KKAE 258 (408)
T ss_pred HHHH
Confidence 8764
No 158
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.27 E-value=0.0044 Score=74.34 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=91.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccC--CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHF--DLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
..-+.|+|+.|+|||+|++++++. +...+ ..+++++. .++..++...+... ..+. +.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~----~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN-----TMEE----FKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC-----cHHH----HHHHHh
Confidence 356889999999999999999986 33332 22344432 33344444444221 1222 223333
Q ss_pred CceEEEEEeCCCCCChhh--hhhhcccccC-CCCCcEEEEEcCChh---------HHhhcCCCceEeCCCCChhhHHHHH
Q 045318 288 RKKFLLVLDDMWNDNYGD--WTSLRLPFVA-GASGSKIIVTTRNQS---------VASMMGSVSAYELKKLTDDDCRLVF 355 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~--~~~l~~~~~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf 355 (1388)
+.-+||+||+......+ .+.+...+.. ...|..||+|+.... +...+....++++++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 23489999996432111 1223222211 123456888776421 2233444457999999999999999
Q ss_pred HHcccCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 045318 356 TQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLA 388 (1388)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 388 (1388)
.+.+-..+ ...+ +++...|++.+.|..-.
T Consensus 290 ~~~~~~~~-~~l~---~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 290 KKKAEEEG-IDLP---DEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHHHHcC-CCCC---HHHHHHHHcCcCCCHHH
Confidence 99874321 1222 36788899998887643
No 159
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.26 E-value=0.0018 Score=76.43 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=87.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1388)
..-+.|+|+.|+|||+|++++++... .....+++++ ..++...+...+... .. ..+++.++ .
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~--~~~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR--ESGGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-N 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH--HcCCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-c
Confidence 35678999999999999999998632 2222334443 334444555554321 11 12333333 3
Q ss_pred eEEEEEeCCCCCChhhh--hhhcccccC-CCCCcEEEEEcCCh---------hHHhhcCCCceEeCCCCChhhHHHHHHH
Q 045318 290 KFLLVLDDMWNDNYGDW--TSLRLPFVA-GASGSKIIVTTRNQ---------SVASMMGSVSAYELKKLTDDDCRLVFTQ 357 (1388)
Q Consensus 290 ~~LlVlDdv~~~~~~~~--~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (1388)
.-++++||+.......| +.+...+.. ...|..||+||... .+...+....++++++++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34888999955321111 222222211 02355788888542 2223344446889999999999999988
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHcCCC
Q 045318 358 HSLGTKDFSNHQHLKEIGEEILKKCNGL 385 (1388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 385 (1388)
++-..+ ...+ +++..-|++.+.|.
T Consensus 283 k~~~~~-~~l~---~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS-IRIE---ETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhcCCC
Confidence 773322 1222 35566677776654
No 160
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.25 E-value=6.9e-05 Score=68.57 Aligned_cols=95 Identities=22% Similarity=0.221 Sum_probs=76.2
Q ss_pred HHHhhccCceeeEEEeCCcccccccccc-ccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccC
Q 045318 557 VVHMLLKLQCLRVLCLREYNICKISNTI-GDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLI 635 (1388)
Q Consensus 557 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 635 (1388)
.+..+.+...|...+|++|.+..+|+.| .+...+.+|+|++|.|..+|.++..++.|+.|+++.|. +...|..|..|.
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~ 123 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLI 123 (177)
T ss_pred HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHH
Confidence 3445567778888999999999998766 45558899999999999999999999999999999874 556788888899
Q ss_pred CCCeeecCCCCCcccCcC
Q 045318 636 KLRHLNNYNVPLLEGMPL 653 (1388)
Q Consensus 636 ~L~~L~l~~~~~~~~~p~ 653 (1388)
+|-+|+..+|. ...+|.
T Consensus 124 ~l~~Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 124 KLDMLDSPENA-RAEIDV 140 (177)
T ss_pred hHHHhcCCCCc-cccCcH
Confidence 99999888876 344443
No 161
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.19 E-value=0.002 Score=78.42 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=40.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|-+..++++..++....... ...+++.|+|+.|+||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~---~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN---APKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc---CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999986543211 23468999999999999999999975
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.19 E-value=0.0095 Score=71.46 Aligned_cols=156 Identities=13% Similarity=0.077 Sum_probs=90.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..+.|+|..|+|||.|++++++.......-..+++++ ..++..++...+.. ...+. +++.+++ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~-----~~~~~----f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRD-----GKGDS----FRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHh-----ccHHH----HHHHhhc-C
Confidence 4589999999999999999998632111112334443 34444455444422 11222 2333332 2
Q ss_pred EEEEEeCCCCCCh-hhhh-hhcccccC-CCCCcEEEEEcCCh---------hHHhhcCCCceEeCCCCChhhHHHHHHHc
Q 045318 291 FLLVLDDMWNDNY-GDWT-SLRLPFVA-GASGSKIIVTTRNQ---------SVASMMGSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 291 ~LlVlDdv~~~~~-~~~~-~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
=+|||||+..... ..|. .+...+.. ...|..|||||+.. .+...+...-+++|++.+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 4789999965422 2222 22222211 12456788888752 23344555568999999999999999988
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 359 SLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
+... ..... +++..-|++++.+..
T Consensus 459 a~~r-~l~l~---~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQE-QLNAP---PEVLEFIASRISRNI 482 (617)
T ss_pred HHhc-CCCCC---HHHHHHHHHhccCCH
Confidence 7432 22222 467777888777654
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.18 E-value=0.0015 Score=64.97 Aligned_cols=88 Identities=20% Similarity=0.019 Sum_probs=46.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc-
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK- 289 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k- 289 (1388)
..+.|+|++|+||||+|+.++.... .....++++..+........... ...................+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 5789999999999999999998632 22123444444433222211111 111111111122222222333333333
Q ss_pred eEEEEEeCCCCCC
Q 045318 290 KFLLVLDDMWNDN 302 (1388)
Q Consensus 290 ~~LlVlDdv~~~~ 302 (1388)
..+|++|+++...
T Consensus 79 ~~viiiDei~~~~ 91 (148)
T smart00382 79 PDVLILDEITSLL 91 (148)
T ss_pred CCEEEEECCcccC
Confidence 4899999997653
No 164
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.16 E-value=0.0036 Score=80.50 Aligned_cols=156 Identities=13% Similarity=0.124 Sum_probs=83.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc---cc-CCceEEE-EeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE---SH-FDLKAWT-CVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~-F~~~~wv-~~s~~~~~~ 255 (1388)
..++||+.+++++++.|..... .-+.++|++|+||||+|+.+.....-. .. ....+|. .++.
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~--------~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~----- 244 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK--------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA----- 244 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc--------CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh-----
Confidence 4599999999999999976432 235699999999999999998752110 00 1223332 1111
Q ss_pred HHHHHHHHHhcCCCCCCCcHH-HHHHHHHhhc-CCceEEEEEeCCCCCCh-------hhhhhhcccccCCCCCcEEEEEc
Q 045318 256 KVTKAILRSICMHTDADDDLN-SLQVKLKDGL-SRKKFLLVLDDMWNDNY-------GDWTSLRLPFVAGASGSKIIVTT 326 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~-~~~~~l~~~l-~~k~~LlVlDdv~~~~~-------~~~~~l~~~~~~~~~gs~iivTt 326 (1388)
++. +.. ...+.+ .+...+.+.- .+++.+|++|++..-.. .+...+..+....+ .-++|-||
T Consensus 245 -l~a-------g~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaT 314 (857)
T PRK10865 245 -LVA-------GAK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGAT 314 (857)
T ss_pred -hhh-------ccc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcC
Confidence 110 000 011111 1222222211 25789999999954210 11222333333222 34556555
Q ss_pred CChhHHhhc-------CCCceEeCCCCChhhHHHHHHHcc
Q 045318 327 RNQSVASMM-------GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 327 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
...+....+ ..-..+.+..-+.++...++....
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 554432111 111356677778888888876543
No 165
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.15 E-value=4.2e-05 Score=69.90 Aligned_cols=98 Identities=22% Similarity=0.268 Sum_probs=81.3
Q ss_pred ceeeEEEeCCcccccccc---ccccCcccceeeccCccccccccchhcc-cccceeecCCCcchhhcchhhcccCCCCee
Q 045318 565 QCLRVLCLREYNICKISN---TIGDLKHLRHLDLSETLIETLPESVNTL-YNLHTLLLESCSRLKKLCADMGNLIKLRHL 640 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~---~i~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 640 (1388)
+.+..+||+.|.+-.+++ .+....+|...+|++|.++.+|+.+... +.+.+|++++| .+..+|.++..++.|+.|
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSL 105 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhc
Confidence 446778999998877764 4567788999999999999999988655 58999999997 688999999999999999
Q ss_pred ecCCCCCcccCcCCCCCCCCCCCC
Q 045318 641 NNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 641 ~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
+++.|. +...|..|..|.+|-.|
T Consensus 106 Nl~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 106 NLRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred ccccCc-cccchHHHHHHHhHHHh
Confidence 999998 55677777776666655
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0073 Score=68.21 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=64.2
Q ss_pred CceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh-HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCC
Q 045318 288 RKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS-VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDF 365 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (1388)
+++-++|+|+++.-+......+...+-....++.+|+||.+.+ +... ......+.+.+++.+++.+.+.... +..
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC--
Confidence 3444557799988776777777766655445777777776643 3322 2223679999999999988887653 111
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 366 SNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
. .+.+..++..++|.|..+..+
T Consensus 182 --~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 234567789999999766544
No 167
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.12 E-value=0.0011 Score=77.35 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=86.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|.+..++++.+.+.-.-... ......+-|.++|++|+|||++|+++++. ....| +.+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s---- 251 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS---- 251 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----
Confidence 357899999988888764211100 00123456789999999999999999986 33333 222111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC--------h--hh----hhhhcccccC--CCCC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN--------Y--GD----WTSLRLPFVA--GASG 319 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~--~~----~~~l~~~~~~--~~~g 319 (1388)
++. ....+ .....+...+.....+.+.+|+||+++... . .+ ...+...+.. ...+
T Consensus 252 eL~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 252 ELI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred hhh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 111 11100 011112222222224567889999874310 0 00 1111111111 1245
Q ss_pred cEEEEEcCChhHHhh-c----CCCceEeCCCCChhhHHHHHHHcc
Q 045318 320 SKIIVTTRNQSVASM-M----GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 320 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
.+||+||...+.... + .....+++...+.++..++|..++
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 678888876544432 1 123578999999999999998775
No 168
>PRK10536 hypothetical protein; Provisional
Probab=97.12 E-value=0.0055 Score=64.85 Aligned_cols=136 Identities=13% Similarity=0.126 Sum_probs=75.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEe----CCc-----
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCV----SDD----- 251 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~~----- 251 (1388)
..+.+|.......+.++... .+|.+.|++|+|||+||.++..+.-..+.|+..+.+.- .+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~----------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLP 124 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK----------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLP 124 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC----------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCC
Confidence 44678888888888888542 48999999999999999998875322344543332211 110
Q ss_pred cCHHH----HHHHHHHHhcCCCCCCCcHHHHHH--------HHHhhcCCceE---EEEEeCCCCCChhhhhhhcccccCC
Q 045318 252 FDAIK----VTKAILRSICMHTDADDDLNSLQV--------KLKDGLSRKKF---LLVLDDMWNDNYGDWTSLRLPFVAG 316 (1388)
Q Consensus 252 ~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~l~~~~~~~ 316 (1388)
-+..+ .+.-+...+..-. .....+.+.. .-..+++|..+ +||+|++...+..+...+... -
T Consensus 125 G~~~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~ 200 (262)
T PRK10536 125 GDIAEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---L 200 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---c
Confidence 01111 1111222211100 0001111100 01124556544 999999977766555555543 3
Q ss_pred CCCcEEEEEcCChh
Q 045318 317 ASGSKIIVTTRNQS 330 (1388)
Q Consensus 317 ~~gs~iivTtR~~~ 330 (1388)
+.+|+||+|--..+
T Consensus 201 g~~sk~v~~GD~~Q 214 (262)
T PRK10536 201 GENVTVIVNGDITQ 214 (262)
T ss_pred CCCCEEEEeCChhh
Confidence 68999999876543
No 169
>PRK08116 hypothetical protein; Validated
Probab=97.11 E-value=0.0015 Score=71.77 Aligned_cols=104 Identities=22% Similarity=0.216 Sum_probs=59.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..+.++|..|+|||.||.++++... .+-..+++++ ..+++..+........ ..+..+ +.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~--~~~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~----~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELI--EKGVPVIFVN------FPQLLNRIKSTYKSSG--KEDENE----IIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEE------HHHHHHHHHHHHhccc--cccHHH----HHHHhcCCC
Confidence 3578999999999999999999732 2223445554 3445555554443211 112222 223334333
Q ss_pred EEEEEeCCCCCChhhhhh--hcccccC-CCCCcEEEEEcCCh
Q 045318 291 FLLVLDDMWNDNYGDWTS--LRLPFVA-GASGSKIIVTTRNQ 329 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~--l~~~~~~-~~~gs~iivTtR~~ 329 (1388)
||||||+......+|.. +...+.. -..|..+||||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999995544445543 2222211 13566799999753
No 170
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0086 Score=70.48 Aligned_cols=105 Identities=20% Similarity=0.248 Sum_probs=67.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
+..-+|.++-+++|++++......+. -+-++++.+|++|||||.+|+.|+.. ....| +-++|..-.|..+|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs--~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeI-- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGS--VQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEI-- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhccc--CCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhh--
Confidence 45678999999999999875443321 45589999999999999999999985 44444 22455555554443
Q ss_pred HHHHHhcCCCCC--CCcHHHHHHHHHhhcCCceEEEEEeCCCC
Q 045318 260 AILRSICMHTDA--DDDLNSLQVKLKDGLSRKKFLLVLDDMWN 300 (1388)
Q Consensus 260 ~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 300 (1388)
.+.... ..=...+.+.+++. +...=|+.+|.|+.
T Consensus 481 ------kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvDK 516 (906)
T KOG2004|consen 481 ------KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVDK 516 (906)
T ss_pred ------cccceeeeccCChHHHHHHHhh-CCCCceEEeehhhh
Confidence 221110 11123344444433 45566899999854
No 171
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.07 E-value=2.1e-05 Score=91.09 Aligned_cols=60 Identities=27% Similarity=0.275 Sum_probs=37.8
Q ss_pred cceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCc
Q 045318 590 LRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMP 652 (1388)
Q Consensus 590 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p 652 (1388)
|.+-+.+.|.+..+..++.-++.|+.|||++|.... . ..+..|.+|+|||++.|. +..+|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v-~~Lr~l~~LkhLDlsyN~-L~~vp 225 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-V-DNLRRLPKLKHLDLSYNC-LRHVP 225 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-h-HHHHhcccccccccccch-hcccc
Confidence 445555566666666667777777777777764332 2 256677777777777776 44444
No 172
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.06 E-value=0.0043 Score=71.88 Aligned_cols=180 Identities=15% Similarity=0.118 Sum_probs=95.2
Q ss_pred CccccchhhHHHHHHHHhcCCCC-----CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLN-----ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|.+..+++|.+.+..+-.. ...-...+-|.++|++|+|||++|+++++. ....| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEeh----H
Confidence 46889998888887765321100 000123467889999999999999999986 22333 22211 1
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhh----hhhhcccccC--CCCC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN----------YGD----WTSLRLPFVA--GASG 319 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~~~~--~~~g 319 (1388)
.+. ....+. ....+...+.......+.+|++|+++... ... +..+...+.. ...+
T Consensus 214 ~l~----~k~~ge-----~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~ 284 (398)
T PTZ00454 214 EFV----QKYLGE-----GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTN 284 (398)
T ss_pred HHH----HHhcch-----hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCC
Confidence 111 111110 11112222223334578899999985310 001 1122222211 1245
Q ss_pred cEEEEEcCChhHHhh--c---CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC
Q 045318 320 SKIIVTTRNQSVASM--M---GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL 385 (1388)
Q Consensus 320 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 385 (1388)
..||+||...+.... . .-+..+++...+.++..++|..+.- ........++ .++++...|.
T Consensus 285 v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~-~~~l~~dvd~----~~la~~t~g~ 350 (398)
T PTZ00454 285 VKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS-KMNLSEEVDL----EDFVSRPEKI 350 (398)
T ss_pred EEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh-cCCCCcccCH----HHHHHHcCCC
Confidence 678888876443321 1 2235688999999998888886642 2222222233 4455666664
No 173
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.05 E-value=0.00085 Score=70.59 Aligned_cols=37 Identities=30% Similarity=0.384 Sum_probs=30.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVS 249 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s 249 (1388)
-.++|+|..|.||||++..+..+ ....|..+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEecC
Confidence 35789999999999999999986 67788777777553
No 174
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.00 E-value=0.0096 Score=60.01 Aligned_cols=45 Identities=22% Similarity=0.323 Sum_probs=36.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++||-++.++++.-.-.+ ++.+-+.|.||+|+||||-+..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~~--------gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE--------GNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc--------CCCCceEeeCCCCCchhhHHHHHHHH
Confidence 4689999999988766544 45567889999999999988777764
No 175
>PRK08118 topology modulation protein; Reviewed
Probab=96.99 E-value=0.00036 Score=70.55 Aligned_cols=34 Identities=35% Similarity=0.597 Sum_probs=27.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCcccc-ccCCceEE
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVE-SHFDLKAW 245 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 245 (1388)
.|.|+|++|+||||+|+.+++...+. -+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 57899999999999999999875443 45677775
No 176
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.98 E-value=0.01 Score=59.63 Aligned_cols=139 Identities=13% Similarity=0.129 Sum_probs=76.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc------------------ccCCceEEE
Q 045318 185 GRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE------------------SHFDLKAWT 246 (1388)
Q Consensus 185 Gr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------------~~F~~~~wv 246 (1388)
|-++..+.+.+.+..+. -...+.++|+.|+||+|+|..+++..--. .......|+
T Consensus 1 gq~~~~~~L~~~~~~~~-------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHHHcCC-------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 45566777777776532 23467899999999999999887641111 112233333
Q ss_pred EeCCc---cCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEE
Q 045318 247 CVSDD---FDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKII 323 (1388)
Q Consensus 247 ~~s~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ii 323 (1388)
.-... ...+++- ++...+.... ..+++=++|+||++.-....+..+...+-....++++|
T Consensus 74 ~~~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 74 KPDKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp ETTTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred ecccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 32221 2222222 3333322111 12456689999998877778888887777667789998
Q ss_pred EEcCChh-HHhh-cCCCceEeCCCCC
Q 045318 324 VTTRNQS-VASM-MGSVSAYELKKLT 347 (1388)
Q Consensus 324 vTtR~~~-v~~~-~~~~~~~~l~~L~ 347 (1388)
++|++.. +... ......+.+.++|
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8888754 2222 2222456666553
No 177
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.98 E-value=0.0081 Score=71.16 Aligned_cols=169 Identities=12% Similarity=0.108 Sum_probs=89.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc---ccCCceEEEEeCCcc
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE---SHFDLKAWTCVSDDF 252 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~~s~~~ 252 (1388)
..+.|.+..++++.+.+..+-... ..-...+-|.++|++|+|||++|+++++..... ..+....|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 457889999998888764211000 000233558899999999999999999863211 01123344444322
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhc-CCceEEEEEeCCCCCC-------hhhh-----hhhcccccC--CC
Q 045318 253 DAIKVTKAILRSICMHTDADDDLNSLQVKLKDGL-SRKKFLLVLDDMWNDN-------YGDW-----TSLRLPFVA--GA 317 (1388)
Q Consensus 253 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~-----~~l~~~~~~--~~ 317 (1388)
++ +....+. ....+..+....++.. .+++++|++|+++... ..+. ..+...+.. ..
T Consensus 261 ---eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 1111000 0011122222222221 3578999999996421 0111 122222221 12
Q ss_pred CCcEEEEEcCChhHHh-hc----CCCceEeCCCCChhhHHHHHHHcc
Q 045318 318 SGSKIIVTTRNQSVAS-MM----GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 318 ~gs~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
.+..||.||...+... .+ .-+..+++...+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3455677776544322 11 223468999999999999999875
No 178
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.93 E-value=0.033 Score=57.93 Aligned_cols=181 Identities=18% Similarity=0.218 Sum_probs=104.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEe-CCccCHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHhh
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCV-SDDFDAIKVTKAILRSICMHTDA--DDDLNSLQVKLKDG 285 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~ 285 (1388)
+..++.++|.-|.|||.+++++..... + +.++-|.+ ....+...+...|+..+...... ....++..+.+.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~-~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN-E---DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC-C---CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 346999999999999999995543211 1 11222333 34456778888888888763221 11233334444443
Q ss_pred c-CCce-EEEEEeCCCCCChhhhhhhcccccCCCCCc---EEEEEcCC--------hhHHhhcCCCce-EeCCCCChhhH
Q 045318 286 L-SRKK-FLLVLDDMWNDNYGDWTSLRLPFVAGASGS---KIIVTTRN--------QSVASMMGSVSA-YELKKLTDDDC 351 (1388)
Q Consensus 286 l-~~k~-~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs---~iivTtR~--------~~v~~~~~~~~~-~~l~~L~~~~~ 351 (1388)
. +++| ..+++||...-..+..+.+.....-...++ +|+..-.. ......-..... |++.|+++++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 3 5777 899999997655555555543322111122 23332211 111111111123 89999999988
Q ss_pred HHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHH
Q 045318 352 RLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGG 394 (1388)
Q Consensus 352 ~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 394 (1388)
..++..+.-+.....+ ---.+....|.....|.|.+|..++.
T Consensus 206 ~~yl~~~Le~a~~~~~-l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 206 GLYLRHRLEGAGLPEP-LFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHhccCCCcc-cCChhHHHHHHHHhccchHHHHHHHH
Confidence 8887777544322111 11235567888999999999877654
No 179
>CHL00176 ftsH cell division protein; Validated
Probab=96.89 E-value=0.012 Score=72.51 Aligned_cols=179 Identities=16% Similarity=0.164 Sum_probs=95.6
Q ss_pred CccccchhhHHHHHHH---HhcCCCC-CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVEL---LLNDDLN-ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~---l~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.++.++++.+. +.....- .......+-|.++|++|+|||++|++++... .. -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~-----p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EV-----PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC-----CeeeccHH----H
Confidence 4578887666655444 3332110 0001224568899999999999999998752 11 23333311 1
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhhh----hhhcccccC--CCCCc
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN----------YGDW----TSLRLPFVA--GASGS 320 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~----~~l~~~~~~--~~~gs 320 (1388)
+.. ...+ .....+...+.+.....+++|++||++.-. ...+ ..+...+.. ...+-
T Consensus 252 f~~----~~~g-----~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~V 322 (638)
T CHL00176 252 FVE----MFVG-----VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGV 322 (638)
T ss_pred HHH----Hhhh-----hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCe
Confidence 111 1100 011223334445556778999999995421 1122 222222211 23456
Q ss_pred EEEEEcCChhHHhh-c----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC
Q 045318 321 KIIVTTRNQSVASM-M----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG 384 (1388)
Q Consensus 321 ~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g 384 (1388)
.||.||...+.... + .-+..+.+...+.++-.++++.++-. .... + ......+++.+.|
T Consensus 323 iVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~-~~~~--~--d~~l~~lA~~t~G 386 (638)
T CHL00176 323 IVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN-KKLS--P--DVSLELIARRTPG 386 (638)
T ss_pred eEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh-cccc--h--hHHHHHHHhcCCC
Confidence 77777776543321 1 12356888888998888988887632 1111 1 2234667777777
No 180
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.89 E-value=0.00079 Score=83.33 Aligned_cols=110 Identities=21% Similarity=0.225 Sum_probs=81.2
Q ss_pred cCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccc--cchhcc
Q 045318 533 SDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLP--ESVNTL 610 (1388)
Q Consensus 533 ~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp--~~i~~L 610 (1388)
.-+|.||+|.+.+..+. ..++.....++++|+.||+|+++++.+ .+++.|++|+.|.+++-.++.-+ ..+.+|
T Consensus 145 ~~LPsL~sL~i~~~~~~----~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFD----NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hhCcccceEEecCceec----chhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 45788999975544222 233444558999999999999999988 78999999999999987776533 367899
Q ss_pred cccceeecCCCcchhh--cc----hhhcccCCCCeeecCCCCC
Q 045318 611 YNLHTLLLESCSRLKK--LC----ADMGNLIKLRHLNNYNVPL 647 (1388)
Q Consensus 611 ~~L~~L~L~~~~~~~~--lp----~~i~~L~~L~~L~l~~~~~ 647 (1388)
++|++||+|....... +. +.-..|++||.||.+++.+
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 9999999997543221 11 1123489999999998764
No 181
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.018 Score=62.51 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=107.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+-|-++.+++|.+...-+-.+. ..-...+=|.+||++|.|||-||++|++. ....| +.|..+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----IrvvgS---- 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVGS---- 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEeccH----
Confidence 356788998888887654321110 11244567889999999999999999997 44444 444332
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC-CceEEEEEeCCCCCC--------------hhhhhhhcccccCC--CC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLS-RKKFLLVLDDMWNDN--------------YGDWTSLRLPFVAG--AS 318 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~--------------~~~~~~l~~~~~~~--~~ 318 (1388)
+ +++..-++ -..+...+.+.-+ .....|.+|.++... +...-++...+..+ ..
T Consensus 220 E----lVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~ 289 (406)
T COG1222 220 E----LVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG 289 (406)
T ss_pred H----HHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC
Confidence 1 22222111 1223444444443 467899999885411 11122233333322 24
Q ss_pred CcEEEEEcCChhHHhh--c---CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh----HHH
Q 045318 319 GSKIIVTTRNQSVASM--M---GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP----LAA 389 (1388)
Q Consensus 319 gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P----lai 389 (1388)
.-|||..|...++... + .-++.+++..-+.+.-.++|.-++- .......-++ +.+++.|.|.- -|+
T Consensus 290 nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtr-kM~l~~dvd~----e~la~~~~g~sGAdlkai 364 (406)
T COG1222 290 NVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTR-KMNLADDVDL----ELLARLTEGFSGADLKAI 364 (406)
T ss_pred CeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhh-hccCccCcCH----HHHHHhcCCCchHHHHHH
Confidence 5699998877665532 2 2236788886666666778887762 2333333344 45666777754 445
Q ss_pred HHHHHhhc
Q 045318 390 KTLGGLLR 397 (1388)
Q Consensus 390 ~~~~~~l~ 397 (1388)
.+=|++++
T Consensus 365 ctEAGm~A 372 (406)
T COG1222 365 CTEAGMFA 372 (406)
T ss_pred HHHHhHHH
Confidence 55566543
No 182
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.86 E-value=0.022 Score=64.99 Aligned_cols=149 Identities=12% Similarity=0.130 Sum_probs=88.0
Q ss_pred cccc-chhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc--------------------cC
Q 045318 182 EVHG-RDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVES--------------------HF 240 (1388)
Q Consensus 182 ~~vG-r~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F 240 (1388)
.++| -+.-++.+...+... .-.....++|+.|+||||+|+.+.+..--.. |.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCC
Confidence 3556 666677777777543 2235678999999999999998876421111 11
Q ss_pred CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhhhhhcccccCC
Q 045318 241 DLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD----GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG 316 (1388)
Q Consensus 241 ~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~ 316 (1388)
|. .++... .....++++.+.+.. -..+.+-++|+|++..-+......+...+...
T Consensus 79 D~-~~i~~~--------------------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP 137 (329)
T PRK08058 79 DV-HLVAPD--------------------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP 137 (329)
T ss_pred CE-EEeccc--------------------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC
Confidence 11 111100 011122333222211 12345567999999776666667777666655
Q ss_pred CCCcEEEEEcCCh-hHHhh-cCCCceEeCCCCChhhHHHHHHHc
Q 045318 317 ASGSKIIVTTRNQ-SVASM-MGSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 317 ~~gs~iivTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
..++.+|.+|.+. .+... ......+++.++++++..+.+...
T Consensus 138 p~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 138 SGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 5677777777653 33322 223367999999999998877653
No 183
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.84 E-value=0.024 Score=62.47 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=28.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHH
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
-|.+.|++|+|||++|+++++. ... ..++++.....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~--lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARK--RDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH--hCC---CEEEEeCCccCCHHHHh
Confidence 4568999999999999999863 222 23455566555555443
No 184
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.84 E-value=0.019 Score=69.84 Aligned_cols=180 Identities=13% Similarity=0.137 Sum_probs=93.0
Q ss_pred CccccchhhHHHHHHHHh---cCCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLL---NDDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~---~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
.+++|.+..++++.+.+. .... ........+-+.++|++|+|||++|++++... ... ++.++.. +
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~~----~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISGS----D 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccHH----H
Confidence 468888877766655432 2110 00000223457899999999999999999752 222 2333211 1
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhhhhhh----ccccc--CCCCCc
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN----------YGDWTSL----RLPFV--AGASGS 320 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~l----~~~~~--~~~~gs 320 (1388)
+.. ...+ .....+...+.......+.+|++||++.-. ...+... ...+. ....+-
T Consensus 124 ~~~----~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v 194 (495)
T TIGR01241 124 FVE----MFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGV 194 (495)
T ss_pred HHH----HHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCe
Confidence 111 1111 011223333334334567899999995421 0112121 11111 122345
Q ss_pred EEEEEcCChhHHh-hc----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC
Q 045318 321 KIIVTTRNQSVAS-MM----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL 385 (1388)
Q Consensus 321 ~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 385 (1388)
.||.||...+... .+ .-+..+.+...+.++-.++|..+.-. ....... ....+++.+.|.
T Consensus 195 ~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~-~~~~~~~----~l~~la~~t~G~ 259 (495)
T TIGR01241 195 IVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN-KKLAPDV----DLKAVARRTPGF 259 (495)
T ss_pred EEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc-CCCCcch----hHHHHHHhCCCC
Confidence 6777776543221 11 22357889999998888888876522 1111111 234778888774
No 185
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.78 E-value=0.012 Score=75.13 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=69.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|-+..++.+...+.....+- ..+....++.++|+.|+|||++|+.++... +...+.+.+++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 467898888888888876422110 001234578899999999999999999752 22335555544222111
Q ss_pred HHHHHhcCCCC--CCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccC
Q 045318 260 AILRSICMHTD--ADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVA 315 (1388)
Q Consensus 260 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~ 315 (1388)
+..-++.... .......+...+++ ...-+|+||+++..+.+.+..+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1111222111 11112223332321 2345999999988777777776665543
No 186
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.056 Score=60.42 Aligned_cols=166 Identities=12% Similarity=0.046 Sum_probs=98.5
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-------------------ccCCceEEEEe
Q 045318 188 DDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE-------------------SHFDLKAWTCV 248 (1388)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~~ 248 (1388)
...+++.+.+..+ .-...+.+.|+.|+||+++|+.+....--. .|-| ..|+.-
T Consensus 10 ~~~~~l~~~~~~~-------rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~p 81 (319)
T PRK06090 10 PVWQNWKAGLDAG-------RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPD-LHVIKP 81 (319)
T ss_pred HHHHHHHHHHHcC-------CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCC-EEEEec
Confidence 3455666666443 233578899999999999999887631100 1111 112211
Q ss_pred CCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEE
Q 045318 249 SDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGL-----SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKII 323 (1388)
Q Consensus 249 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ii 323 (1388)
.. ......++++.+ +.+.+ .+++-++|+|+++.-.......+...+-....++.+|
T Consensus 82 ~~------------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fi 142 (319)
T PRK06090 82 EK------------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFL 142 (319)
T ss_pred Cc------------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEE
Confidence 00 001122333322 22222 2455589999997777667777776665555667766
Q ss_pred EEcCC-hhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 324 VTTRN-QSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 324 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
.+|.+ ..+.... .....+.+.+++++++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 143 L~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~---~--~-------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 143 LVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG---I--T-------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC---C--c-------hHHHHHHHcCCCHHHHHHH
Confidence 66655 3444332 333689999999999988876531 1 1 1356789999999877655
No 187
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.76 E-value=0.007 Score=70.14 Aligned_cols=151 Identities=16% Similarity=0.206 Sum_probs=81.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAI 261 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (1388)
.++||++.++.+...+..+ .-|.|.|++|+|||++|+.+.....-...|... -+..+ .+.+++..+
T Consensus 21 ~i~gre~vI~lll~aalag----------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~-~~~ft---tp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG----------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYL-MTRFS---TPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHccC----------CCEEEECCCChhHHHHHHHHHHHhcccCcceee-eeeec---CcHHhcCcH
Confidence 5889999999999988764 247899999999999999999852222233211 11111 122222211
Q ss_pred -HHHhcCCCCCCCcHHHHHHHHHhhcCC---ceEEEEEeCCCCCChhhhhhhcccccCC-----C----CCcEEEEEcCC
Q 045318 262 -LRSICMHTDADDDLNSLQVKLKDGLSR---KKFLLVLDDMWNDNYGDWTSLRLPFVAG-----A----SGSKIIVTTRN 328 (1388)
Q Consensus 262 -~~~l~~~~~~~~~~~~~~~~l~~~l~~---k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----~----~gs~iivTtR~ 328 (1388)
+..... .. .+.+...| .--++++|+++.........+...+... + -..+++|++.+
T Consensus 87 ~i~~~~~----~g-------~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 87 SIQALKD----EG-------RYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HHhhhhh----cC-------chhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 111100 00 01111111 1128999999987766666555444221 1 12356555544
Q ss_pred hhHHh-------hc-CCCceEeCCCCChhhH-HHHHHHc
Q 045318 329 QSVAS-------MM-GSVSAYELKKLTDDDC-RLVFTQH 358 (1388)
Q Consensus 329 ~~v~~-------~~-~~~~~~~l~~L~~~~~-~~lf~~~ 358 (1388)
+ ... .+ .-.-.+.+.++++++. .+++...
T Consensus 156 ~-LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 156 E-LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred C-CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 2 221 11 1123578999986544 7777654
No 188
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.011 Score=70.09 Aligned_cols=164 Identities=18% Similarity=0.214 Sum_probs=92.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
+...+|.++-+++|+++|....... .-+-+++++||++|||||+|++.|++. ....|- -+++..-.|..+|
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~--~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkfv---R~sLGGvrDEAEI-- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTK--KLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKFV---RISLGGVRDEAEI-- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhc--cCCCcEEEEECCCCCCchhHHHHHHHH--hCCCEE---EEecCccccHHHh--
Confidence 4567899999999999986432111 134479999999999999999999986 555552 2334443333222
Q ss_pred HHHHHhcCCCCC--CCcHHHHHHHHHhhcCCceEEEEEeCCCCCC----------------hhhhhhhcccccCC-CCCc
Q 045318 260 AILRSICMHTDA--DDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN----------------YGDWTSLRLPFVAG-ASGS 320 (1388)
Q Consensus 260 ~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------------~~~~~~l~~~~~~~-~~gs 320 (1388)
.+.... ..=...+.+.+++. +.+.=+++||.++... +++=..|...+..- --=|
T Consensus 393 ------RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 393 ------RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ------ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 222110 01112233333332 4567799999985421 11111111111110 1123
Q ss_pred E-EEEEcCC-hh-H-HhhcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 321 K-IIVTTRN-QS-V-ASMMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 321 ~-iivTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
. +.|||-+ -+ + +..+....++++.+-+++|-.++-+++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 3444433 22 2 2234555789999999999988888775
No 189
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.75 E-value=0.046 Score=70.24 Aligned_cols=52 Identities=25% Similarity=0.325 Sum_probs=38.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...++|.+.-+++|.+++....... ..+..++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~--~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRG--KMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhc--CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3458899999999988765321111 023358999999999999999999986
No 190
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.054 Score=60.63 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=63.0
Q ss_pred CceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCC
Q 045318 288 RKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDF 365 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (1388)
+++-++|+|+++.-+...-..+...+-....++.+|++|.. ..+.... .....+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~-- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---V-- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---C--
Confidence 56678999999776655556665555444557777766664 3333222 223678999999999988776531 1
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 366 SNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
+ +..+..++..++|.|+.+..+.
T Consensus 187 --~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 --S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred --C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1236678999999998765443
No 191
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.02 Score=64.88 Aligned_cols=148 Identities=21% Similarity=0.269 Sum_probs=87.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
.....|.+.|++|+|||+||..++.. ..|..+--+ .+- ++ ++. .+......+...+....+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~----S~FPFvKii---Spe---~m-------iG~--sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS----SDFPFVKII---SPE---DM-------IGL--SESAKCAHIKKIFEDAYK 596 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh----cCCCeEEEe---ChH---Hc-------cCc--cHHHHHHHHHHHHHHhhc
Confidence 45667789999999999999999964 556533222 221 11 111 112223334444555556
Q ss_pred CceEEEEEeCCCCCChhhhhhhcccc---------------cCCCCCcEEEEEcCChhHHhhcCCC----ceEeCCCCCh
Q 045318 288 RKKFLLVLDDMWNDNYGDWTSLRLPF---------------VAGASGSKIIVTTRNQSVASMMGSV----SAYELKKLTD 348 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~~~~l~~~~---------------~~~~~gs~iivTtR~~~v~~~~~~~----~~~~l~~L~~ 348 (1388)
+.--.||+||+.. .-+|-.+...| |+.+..--|+-||-...|...|+.. .+|.++.++.
T Consensus 597 S~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 597 SPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred CcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 7778999999933 23443333222 2223334466678778888877543 5789999988
Q ss_pred -hhHHHHHHHcc-cCCCCCCCCchHHHHHHHHHHHc
Q 045318 349 -DDCRLVFTQHS-LGTKDFSNHQHLKEIGEEILKKC 382 (1388)
Q Consensus 349 -~~~~~lf~~~~-~~~~~~~~~~~~~~~~~~i~~~c 382 (1388)
++..+.++..- |. +.+.+.++++...+|
T Consensus 675 ~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 675 GEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred hHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 66677666542 32 223445566666665
No 192
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.73 E-value=0.021 Score=66.73 Aligned_cols=119 Identities=21% Similarity=0.192 Sum_probs=75.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceE
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKF 291 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~ 291 (1388)
++.|.|+-++||||+++.+... .... .+++...+......-+.+.. ..+.+.-..++.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~--~~~~---~iy~~~~d~~~~~~~l~d~~-----------------~~~~~~~~~~~~ 96 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKG--LLEE---IIYINFDDLRLDRIELLDLL-----------------RAYIELKEREKS 96 (398)
T ss_pred EEEEECCccccHHHHHHHHHhh--CCcc---eEEEEecchhcchhhHHHHH-----------------HHHHHhhccCCc
Confidence 9999999999999999777765 2111 44444333221111111111 111111112788
Q ss_pred EEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhh------cCCCceEeCCCCChhhHHHHH
Q 045318 292 LLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASM------MGSVSAYELKKLTDDDCRLVF 355 (1388)
Q Consensus 292 LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~------~~~~~~~~l~~L~~~~~~~lf 355 (1388)
.|+||.|.. ..+|......+.+.++. +|++|+-+...... .+....+++-||+-.|...+-
T Consensus 97 yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 97 YIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred eEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 999999954 46899988888887666 89998877544332 233457899999998876643
No 193
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.72 E-value=0.0075 Score=67.60 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCc-eEEEEeCCc-cCHHHHHHHHHHHhcC
Q 045318 190 KKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDL-KAWTCVSDD-FDAIKVTKAILRSICM 267 (1388)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~-~~~~~~~~~i~~~l~~ 267 (1388)
..++++.+..- ++-..+.|+|..|+|||||++.+++... .++-+. ++|+.+.+. .++.++++.+...+..
T Consensus 120 ~~RvID~l~Pi-------GkGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 120 SMRVVDLVAPI-------GKGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hHhhhhheeec-------CCCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 34577777643 2234568999999999999999887521 122233 467677654 4678888888887765
Q ss_pred CCCCCCcHHH-----HHHHHHhhc--CCceEEEEEeCC
Q 045318 268 HTDADDDLNS-----LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 268 ~~~~~~~~~~-----~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
...+...... ....+.+++ ++++++||+|++
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 4432221111 111222222 589999999999
No 194
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.00077 Score=70.24 Aligned_cols=80 Identities=24% Similarity=0.200 Sum_probs=44.0
Q ss_pred eeeEEEeCCccccccc--ccc-ccCcccceeeccCcccccc---ccchhcccccceeecCCCcchhhcchhh-cccCCCC
Q 045318 566 CLRVLCLREYNICKIS--NTI-GDLKHLRHLDLSETLIETL---PESVNTLYNLHTLLLESCSRLKKLCADM-GNLIKLR 638 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp--~~i-~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i-~~L~~L~ 638 (1388)
.+..|.+.++.|...- ..| ...++++.|||.+|.|..- -.-+.+|+.|++|+|+.|+....+- .. .-+.+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceE
Confidence 4456666677665443 122 3456778888888877633 2334566777777777664322111 11 2345666
Q ss_pred eeecCCCC
Q 045318 639 HLNNYNVP 646 (1388)
Q Consensus 639 ~L~l~~~~ 646 (1388)
.|-+.|..
T Consensus 125 ~lVLNgT~ 132 (418)
T KOG2982|consen 125 VLVLNGTG 132 (418)
T ss_pred EEEEcCCC
Confidence 66665554
No 195
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.0003 Score=73.23 Aligned_cols=82 Identities=23% Similarity=0.276 Sum_probs=60.9
Q ss_pred ccCceeeEEEeCCccccc---cccccccCcccceeeccCcccc----ccccchhcccccceeecCCCcch-hhcchhhcc
Q 045318 562 LKLQCLRVLCLREYNICK---ISNTIGDLKHLRHLDLSETLIE----TLPESVNTLYNLHTLLLESCSRL-KKLCADMGN 633 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~---lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i~~L~~L~~L~L~~~~~~-~~lp~~i~~ 633 (1388)
...+.++.|||.+|.|+. +-..+.+|++|++|+|+.|.+. .+| --+.||++|-|.+...- ....+.+..
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCCCChhhhhhhhhc
Confidence 677889999999999884 3345588999999999999654 445 35679999999774321 233445667
Q ss_pred cCCCCeeecCCCC
Q 045318 634 LIKLRHLNNYNVP 646 (1388)
Q Consensus 634 L~~L~~L~l~~~~ 646 (1388)
++.++.|.++.|.
T Consensus 145 lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 145 LPKVTELHMSDNS 157 (418)
T ss_pred chhhhhhhhccch
Confidence 8888888887774
No 196
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.068 Score=59.91 Aligned_cols=177 Identities=10% Similarity=0.031 Sum_probs=98.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC------c--eEEEEeCCccCHHHHHHH
Q 045318 189 DKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD------L--KAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~------~--~~wv~~s~~~~~~~~~~~ 260 (1388)
..+.+...+..+ .-..-..+.|+.|+||+++|+.++...--..... | +-++.....+|...+
T Consensus 10 ~~~~l~~~~~~~-------rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--- 79 (325)
T PRK06871 10 TYQQITQAFQQG-------LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--- 79 (325)
T ss_pred HHHHHHHHHHcC-------CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE---
Confidence 345566666543 2235677999999999999999886421111000 0 000001111111000
Q ss_pred HHHHhcCCCCCCCcHHHHHH---HHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh-hHHhh-
Q 045318 261 ILRSICMHTDADDDLNSLQV---KLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ-SVASM- 334 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~---~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~- 334 (1388)
.........++++.+ .+... ..+++-++|+|+++.-.......+...+-....++.+|++|.+. .+...
T Consensus 80 -----~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 80 -----EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred -----ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHH
Confidence 000011123333332 22211 23566688899998777667777776666555677777777653 44332
Q ss_pred cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 335 MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
......+.+.++++++..+.+.... + . . ...+...++.++|.|..+
T Consensus 155 ~SRC~~~~~~~~~~~~~~~~L~~~~-~-~----~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 155 YSRCQTWLIHPPEEQQALDWLQAQS-S-A----E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred HhhceEEeCCCCCHHHHHHHHHHHh-c-c----C---hHHHHHHHHHcCCCHHHH
Confidence 2223689999999999988887653 1 1 1 112566788999999644
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.62 E-value=0.013 Score=75.59 Aligned_cols=138 Identities=15% Similarity=0.143 Sum_probs=74.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|.+..++.+...+.....+. ..+....++.++|+.|+|||++|+.+++.. -..-...+.+.++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 468899999998888876422110 001223578899999999999999999742 11112233343332211 1
Q ss_pred HHHHHhcCCCCCC---CcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC-----------CCCcEEEEE
Q 045318 260 AILRSICMHTDAD---DDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG-----------ASGSKIIVT 325 (1388)
Q Consensus 260 ~i~~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iivT 325 (1388)
.....+.+..... .....+...++ ....-+|+|||+...+...+..+...+..+ ...+-||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~---~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVR---RRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHH---hCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 1122222221111 11112222222 122359999999777777777766555432 122347888
Q ss_pred cCC
Q 045318 326 TRN 328 (1388)
Q Consensus 326 tR~ 328 (1388)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 875
No 198
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.61 E-value=0.0077 Score=64.51 Aligned_cols=102 Identities=18% Similarity=0.175 Sum_probs=57.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..+.++|.+|+|||+||.++++.... .-..+++++ ..+++..+-..... .....+. +.+.+. +.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it------~~~l~~~l~~~~~~---~~~~~~~----~l~~l~-~~ 163 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT------VADIMSAMKDTFSN---SETSEEQ----LLNDLS-NV 163 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE------HHHHHHHHHHHHhh---ccccHHH----HHHHhc-cC
Confidence 46889999999999999999986322 223445553 34555544433321 1112222 223344 34
Q ss_pred EEEEEeCCCCCChhhhhh-hcccccCC--CCCcEEEEEcCC
Q 045318 291 FLLVLDDMWNDNYGDWTS-LRLPFVAG--ASGSKIIVTTRN 328 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~-l~~~~~~~--~~gs~iivTtR~ 328 (1388)
=+||+||+......+|+. +...+.+. ...-.+||||..
T Consensus 164 dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 164 DLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 488999997665566664 22112221 223457778764
No 199
>PRK08181 transposase; Validated
Probab=96.61 E-value=0.004 Score=67.80 Aligned_cols=101 Identities=21% Similarity=0.113 Sum_probs=54.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.-+.++|++|+|||.||.++.+... + ....++|++ ..+++..+..... ....++... . + .+-
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~-~-~g~~v~f~~------~~~L~~~l~~a~~-----~~~~~~~l~---~-l-~~~ 168 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI-E-NGWRVLFTR------TTDLVQKLQVARR-----ELQLESAIA---K-L-DKF 168 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH-H-cCCceeeee------HHHHHHHHHHHHh-----CCcHHHHHH---H-H-hcC
Confidence 3488999999999999999987531 2 222345553 3445555433221 112222222 2 2 133
Q ss_pred EEEEEeCCCCCChhhhh--hhcccccCCCCCcEEEEEcCCh
Q 045318 291 FLLVLDDMWNDNYGDWT--SLRLPFVAGASGSKIIVTTRNQ 329 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~--~l~~~~~~~~~gs~iivTtR~~ 329 (1388)
=|||+||+......+|. .+...+.....+..+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 49999999544333332 2222222211124688888764
No 200
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.58 E-value=0.033 Score=56.99 Aligned_cols=121 Identities=21% Similarity=0.227 Sum_probs=70.4
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHH
Q 045318 179 NEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
+-..++|.|..++.+++-...-..+ ..-.-|.+||.-|+||++|++++.+. +....-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G----~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEG----LPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcC----CcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH-------
Confidence 3346899999998888643221111 22345789999999999999999986 3333322 2222221
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCC-ChhhhhhhcccccCC---CCCcEEEEEcCC
Q 045318 259 KAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVAG---ASGSKIIVTTRN 328 (1388)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~---~~gs~iivTtR~ 328 (1388)
+..++..+.+.++. ..+||.|..||+.-+ ..+.++.+...+..+ .+..-++..|-+
T Consensus 123 ------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11122223333332 378999999999433 335677777666543 244445554433
No 201
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.53 E-value=0.009 Score=66.73 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=69.6
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHH
Q 045318 185 GRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRS 264 (1388)
Q Consensus 185 Gr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (1388)
+|....+...+++..-... ...+-+.++|..|+|||.||.++++... +..+ .+.++++ .+++.++...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~----~~~~gl~L~G~~G~GKThLa~Aia~~l~-~~g~-~v~~~~~------~~l~~~lk~~ 202 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG----EKVKGLYLYGDFGVGKSYLLAAIANELA-KKGV-SSTLLHF------PEFIRELKNS 202 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc----CCCCeEEEECCCCCCHHHHHHHHHHHHH-HcCC-CEEEEEH------HHHHHHHHHH
Confidence 4444455555555432111 2345688999999999999999999743 2233 3455544 3455555444
Q ss_pred hcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhh--hcccc-cCC-CCCcEEEEEcCC
Q 045318 265 ICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTS--LRLPF-VAG-ASGSKIIVTTRN 328 (1388)
Q Consensus 265 l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~~~-~~~-~~gs~iivTtR~ 328 (1388)
.... +..+ .+.. + .+-=||||||+-.....+|.. +...+ ... ..+-.+|+||..
T Consensus 203 ~~~~-----~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 203 ISDG-----SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HhcC-----cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 4211 1222 2222 2 234589999997666677754 43333 222 245678888864
No 202
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.52 E-value=0.057 Score=64.07 Aligned_cols=206 Identities=14% Similarity=0.088 Sum_probs=114.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCc------cccccCCceEEEEeCCccCH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDH------MVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~------~~~~~F~~~~wv~~s~~~~~ 254 (1388)
..+-+|+.+..+|.+.+...-... .....+.|.|.+|+|||..+..|.+.. .--..|+ .+.|..-.-..+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~---~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~ 471 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ---GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASP 471 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC---CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCH
Confidence 345689999999998886533221 334589999999999999999999842 1223343 344554555678
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhc-----CCceEEEEEeCCCCCChhhhhhhcccccC-CCCCcEEEEEcC-
Q 045318 255 IKVTKAILRSICMHTDADDDLNSLQVKLKDGL-----SRKKFLLVLDDMWNDNYGDWTSLRLPFVA-GASGSKIIVTTR- 327 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~gs~iivTtR- 327 (1388)
.++...|..++.+.... .....+.+..++ +.+..+|++|+++.--....+-+...|.+ ..++||++|-+=
T Consensus 472 ~~~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 472 REIYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEec
Confidence 99999999999876532 222222333333 24568888998732110112223333333 347888766541
Q ss_pred C-hh---------HHhhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHh
Q 045318 328 N-QS---------VASMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGL 395 (1388)
Q Consensus 328 ~-~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 395 (1388)
+ .+ |+..++- ..+..++-+..+-.++...+.-+... -.....+-+|++|+.-.|-.-.|+.+.-++
T Consensus 549 NTmdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1 11 1111111 23556666666666666555432211 122233444555555555555555444333
No 203
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.52 E-value=0.003 Score=64.53 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=50.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.-+.++|..|+|||.||.++.+... +..+ .+.|+. ..+++..+ ..... .....+....+ . +-
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~-~~g~-~v~f~~------~~~L~~~l----~~~~~-~~~~~~~~~~l----~-~~ 109 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAI-RKGY-SVLFIT------ASDLLDEL----KQSRS-DGSYEELLKRL----K-RV 109 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT---EEEEE------HHHHHHHH----HCCHC-CTTHCHHHHHH----H-TS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhc-cCCc-ceeEee------cCceeccc----ccccc-ccchhhhcCcc----c-cc
Confidence 5688999999999999999998632 2233 345554 33444443 22211 12222222222 2 22
Q ss_pred EEEEEeCCCCCChhhhhh--hcccccCC-CCCcEEEEEcCCh
Q 045318 291 FLLVLDDMWNDNYGDWTS--LRLPFVAG-ASGSKIIVTTRNQ 329 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~--l~~~~~~~-~~gs~iivTtR~~ 329 (1388)
=||||||+-.....+|.. +...+... ..+ .+||||...
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 478899996655445533 11111111 223 588888753
No 204
>PRK06921 hypothetical protein; Provisional
Probab=96.50 E-value=0.0081 Score=65.79 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=53.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1388)
...+.++|..|+|||.||.++++... +..-..+++++. .+++..+...+ +.....+.. + .+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~------~~l~~~l~~~~----------~~~~~~~~~-~-~~ 177 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPF------VEGFGDLKDDF----------DLLEAKLNR-M-KK 177 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEH------HHHHHHHHHHH----------HHHHHHHHH-h-cC
Confidence 35688999999999999999998632 221234566653 23333332221 111112222 2 23
Q ss_pred eEEEEEeCCCC-----CChhhhhh--hcccccCC-CCCcEEEEEcCC
Q 045318 290 KFLLVLDDMWN-----DNYGDWTS--LRLPFVAG-ASGSKIIVTTRN 328 (1388)
Q Consensus 290 ~~LlVlDdv~~-----~~~~~~~~--l~~~~~~~-~~gs~iivTtR~ 328 (1388)
-=||||||+.. ....+|.. +...+... ..+..+||||..
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 45999999922 22334543 32222111 234568888864
No 205
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.49 E-value=0.012 Score=76.05 Aligned_cols=138 Identities=15% Similarity=0.158 Sum_probs=77.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|.+..++.+...+.....+. ..+....++.++|+.|+|||++|+.+.... ...-...+.+.++.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccch---
Confidence 468999999999999887532110 001234678899999999999999999752 11112233344443222111
Q ss_pred HHHHHhcCCCCC---CCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC-----------CCCcEEEEE
Q 045318 260 AILRSICMHTDA---DDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG-----------ASGSKIIVT 325 (1388)
Q Consensus 260 ~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iivT 325 (1388)
...+.+.... ......+...+++ ....+|+||++...++..+..+...+..+ -..+-||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1122111111 1111223333322 23348999999887777777777666443 133447778
Q ss_pred cCC
Q 045318 326 TRN 328 (1388)
Q Consensus 326 tR~ 328 (1388)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 206
>PRK06526 transposase; Provisional
Probab=96.48 E-value=0.0041 Score=67.39 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=51.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.-|.|+|++|+|||+||.++..... +..+. +.|+ +..+++..+..... ... ....+.+. .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~-~~g~~-v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRAC-QAGHR-VLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHH-HCCCc-hhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--ccC
Confidence 4578999999999999999987532 22222 2332 33444444433211 111 11223322 234
Q ss_pred EEEEEeCCCCCChhhhh-h-hcccccC-CCCCcEEEEEcCCh
Q 045318 291 FLLVLDDMWNDNYGDWT-S-LRLPFVA-GASGSKIIVTTRNQ 329 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~-~-l~~~~~~-~~~gs~iivTtR~~ 329 (1388)
-+||+||+.......|. . +...+.. ...+ .+|+||...
T Consensus 161 dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~ 201 (254)
T PRK06526 161 PLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKP 201 (254)
T ss_pred CEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCC
Confidence 58999999643222222 2 2222211 1234 488888764
No 207
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.45 E-value=0.0079 Score=77.11 Aligned_cols=139 Identities=18% Similarity=0.134 Sum_probs=76.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
...++|.+..++.+.+.+.....+- .......++.++|+.|+|||.+|+++... +-+.....+-+.++.-.+.
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhh----
Confidence 3578999999999999886431110 01134568899999999999999988764 1111111122222221111
Q ss_pred HHHHHHhcCCCCC---CCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCC-----------CCcEEEE
Q 045318 259 KAILRSICMHTDA---DDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGA-----------SGSKIIV 324 (1388)
Q Consensus 259 ~~i~~~l~~~~~~---~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iiv 324 (1388)
.-...+.+.... ...-..+...+++ ...-+|+||++...++..++.+...+..+. ..+-||+
T Consensus 639 -~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 639 -HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred -hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 111122221111 1111223333332 455699999998777766766665554432 4566777
Q ss_pred EcCC
Q 045318 325 TTRN 328 (1388)
Q Consensus 325 TtR~ 328 (1388)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 7754
No 208
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.43 E-value=0.06 Score=61.06 Aligned_cols=200 Identities=14% Similarity=0.168 Sum_probs=119.3
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHH-HHHhcCccccccCCceEEEEeCC---ccCHHHHHHHH
Q 045318 186 RDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLA-QLVYNDHMVESHFDLKAWTCVSD---DFDAIKVTKAI 261 (1388)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i 261 (1388)
|.+..++|..||.... -..|.|.||-|.||+.|+ .++..+.+. +..+.+.+ ..+-...++.+
T Consensus 1 R~e~~~~L~~wL~e~~--------~TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~l 66 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--------NTFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNL 66 (431)
T ss_pred CchHHHHHHHHHhcCC--------CeEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHH
Confidence 5677899999997642 268899999999999999 777776322 33443322 12233444444
Q ss_pred HHHhc-----------------------CCCCC-CCcH-HHHHH-------HHHh-------------------hcC---
Q 045318 262 LRSIC-----------------------MHTDA-DDDL-NSLQV-------KLKD-------------------GLS--- 287 (1388)
Q Consensus 262 ~~~l~-----------------------~~~~~-~~~~-~~~~~-------~l~~-------------------~l~--- 287 (1388)
+.++| +.... .... .++.. .|++ +|.
T Consensus 67 A~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hP 146 (431)
T PF10443_consen 67 ASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHP 146 (431)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCC
Confidence 44443 11111 1111 11111 1111 111
Q ss_pred CceEEEEEeCCCCCC---------hhhhhhhcccccCCCCCcEEEEEcCChhHHhh----cCC--CceEeCCCCChhhHH
Q 045318 288 RKKFLLVLDDMWNDN---------YGDWTSLRLPFVAGASGSKIIVTTRNQSVASM----MGS--VSAYELKKLTDDDCR 352 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~---------~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~----~~~--~~~~~l~~L~~~~~~ 352 (1388)
.+|=+||+|+.-... ..+|..... ..+-.+||++|-+....+. +.. .+.+.+...+.+.|.
T Consensus 147 e~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak 222 (431)
T PF10443_consen 147 ERRPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAK 222 (431)
T ss_pred ccCCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHH
Confidence 235689999984421 234544321 2356789999987555443 322 257899999999999
Q ss_pred HHHHHcccCCCCC------------CCC----chHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHH
Q 045318 353 LVFTQHSLGTKDF------------SNH----QHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPF 403 (1388)
Q Consensus 353 ~lf~~~~~~~~~~------------~~~----~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~ 403 (1388)
++...+.-..... ... .....-....++..||--.-+..+++.++...++.
T Consensus 223 ~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 223 QYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 9998876332110 000 12334456788999999999999999998776553
No 209
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.41 E-value=0.013 Score=60.51 Aligned_cols=132 Identities=20% Similarity=0.223 Sum_probs=65.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc--C----HHH--
Q 045318 185 GRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF--D----AIK-- 256 (1388)
Q Consensus 185 Gr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~----~~~-- 256 (1388)
.+..+-...++.+... .+|.+.|++|.|||.||.+..-+.-..+.|+..+++.-.-.. + +-+
T Consensus 4 p~~~~Q~~~~~al~~~----------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~ 73 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN----------DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLE 73 (205)
T ss_dssp --SHHHHHHHHHHHH-----------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-----
T ss_pred CCCHHHHHHHHHHHhC----------CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHH
Confidence 3445556666776532 489999999999999998888765556788887776422110 0 000
Q ss_pred -----HHHHHHHHhcCCCCCCCcHHHHHHH------HHhhcCCc---eEEEEEeCCCCCChhhhhhhcccccCCCCCcEE
Q 045318 257 -----VTKAILRSICMHTDADDDLNSLQVK------LKDGLSRK---KFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKI 322 (1388)
Q Consensus 257 -----~~~~i~~~l~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~i 322 (1388)
.+.-+...+..-. .....+.+.+. -..+++|+ ..+||+|++.+....++..+.... +.||||
T Consensus 74 eK~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~ski 149 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKI 149 (205)
T ss_dssp ----TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EE
T ss_pred HHHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEE
Confidence 0111111111110 11122222210 01234554 469999999777777777765543 689999
Q ss_pred EEEcCChh
Q 045318 323 IVTTRNQS 330 (1388)
Q Consensus 323 ivTtR~~~ 330 (1388)
|++--..+
T Consensus 150 i~~GD~~Q 157 (205)
T PF02562_consen 150 IITGDPSQ 157 (205)
T ss_dssp EEEE----
T ss_pred EEecCcee
Confidence 99986543
No 210
>PRK07261 topology modulation protein; Provisional
Probab=96.41 E-value=0.0066 Score=61.80 Aligned_cols=66 Identities=21% Similarity=0.316 Sum_probs=39.6
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccc-cccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMV-ESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.|.|+|++|+||||||+.+.....+ .-+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 4789999999999999999864222 1234555552111 11223344455555666555
Q ss_pred EEEEEeCCCC
Q 045318 291 FLLVLDDMWN 300 (1388)
Q Consensus 291 ~LlVlDdv~~ 300 (1388)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 57788743
No 211
>PRK09183 transposase/IS protein; Provisional
Probab=96.40 E-value=0.0079 Score=65.72 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=51.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..|.|+|+.|+|||+||.++...... ..+ .+.++. ..++...+...... .. +...+++.+ .+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~-~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~ 165 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR-AGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAP 165 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH-cCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCC
Confidence 46779999999999999999765222 222 223332 23343333222111 11 112232322 344
Q ss_pred EEEEEeCCCCCChhhhh--hhcccccCC-CCCcEEEEEcCCh
Q 045318 291 FLLVLDDMWNDNYGDWT--SLRLPFVAG-ASGSKIIVTTRNQ 329 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~--~l~~~~~~~-~~gs~iivTtR~~ 329 (1388)
-++|+||+.......+. .+...+... ..++ +|+||...
T Consensus 166 dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~~ 206 (259)
T PRK09183 166 RLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNLP 206 (259)
T ss_pred CEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCCC
Confidence 59999999654333332 222222111 2344 88888653
No 212
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.0078 Score=73.65 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=76.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC---CceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF---DLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~ 256 (1388)
..++|-+..++.+.+.+.....+- +....+.+...+|+.|||||-||++++.. -| +..+-+.+|+-..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHHH---
Confidence 468999999999999887543221 12245678888999999999999999864 23 2333333332211
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceE-EEEEeCCCCCChhhhhhhcccccCC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKF-LLVLDDMWNDNYGDWTSLRLPFVAG 316 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~ 316 (1388)
+.-+..+.+..+.--..++ .-.+-+..+.++| +|.||+|...+++-.+-+...+.++
T Consensus 563 --kHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 563 --KHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred --HHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 1122333333322111111 1234445566777 8889999888877777777666654
No 213
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.35 E-value=0.0018 Score=63.85 Aligned_cols=88 Identities=24% Similarity=0.103 Sum_probs=47.4
Q ss_pred EEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEE
Q 045318 213 IPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFL 292 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~L 292 (1388)
|.++|+.|+|||+||+.+++.. .. ...-+.++...+..++....--. .... ......+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~--~~---~~~~i~~~~~~~~~dl~g~~~~~-~~~~--~~~~~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL--GR---PVIRINCSSDTTEEDLIGSYDPS-NGQF--EFKDGPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH--TC---EEEEEE-TTTSTHHHHHCEEET--TTTT--CEEE-CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh--hc---ceEEEEeccccccccceeeeeec-cccc--ccccccccccc-----cceeE
Confidence 6799999999999999999752 11 22335677777776664432111 0000 00000000000 17899
Q ss_pred EEEeCCCCCChhhhhhhcccc
Q 045318 293 LVLDDMWNDNYGDWTSLRLPF 313 (1388)
Q Consensus 293 lVlDdv~~~~~~~~~~l~~~~ 313 (1388)
+|||++......-+..+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999765544444444333
No 214
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.31 E-value=0.0039 Score=69.57 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=42.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCc
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
..++|.++.++++++++.....+. ....++++++|++|+||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~--~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGL--EERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcC--CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999997643321 1345899999999999999999998863
No 215
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.31 E-value=0.036 Score=70.30 Aligned_cols=166 Identities=17% Similarity=0.167 Sum_probs=88.5
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
+...+|.++-+++|++++....... .....++.++|++|+||||+|+.++.. ....| +-+..+...+..++..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~--~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVN--KIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcc--cCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhcc
Confidence 4568999999999998886321100 023468999999999999999999974 22233 1233333333322211
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhh----hhhhcccccC---------------CCCCc
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGD----WTSLRLPFVA---------------GASGS 320 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~----~~~l~~~~~~---------------~~~gs 320 (1388)
.- +... ......+...+.+. ....-+++||.++...... ...+...+.+ .-...
T Consensus 394 ~~-~~~~-----g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 394 HR-RTYI-----GSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ch-hccC-----CCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 10 0000 01112233333332 2234478999996533211 1222222211 11334
Q ss_pred EEEEEcCChhHHhh-cCCCceEeCCCCChhhHHHHHHHcc
Q 045318 321 KIIVTTRNQSVASM-MGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 321 ~iivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
-+|.|+....+... .....++++.++++++-.++..++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 45556654433222 1223578889999888888877764
No 216
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.28 E-value=0.02 Score=66.08 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=81.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc-------------------cCCc
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVES-------------------HFDL 242 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~ 242 (1388)
.++|-+....++..+..... ....-+.++|+.|+||||+|.++.+...-.. ....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhcC------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 45677777888888876432 1223488999999999999999987521111 1123
Q ss_pred eEEEEeCCccC---HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCC
Q 045318 243 KAWTCVSDDFD---AIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASG 319 (1388)
Q Consensus 243 ~~wv~~s~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~g 319 (1388)
+..+..+.... ..+..+++.+...... ..++.-++++|+++....+.-..+...+......
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~ 139 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKN 139 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCC
Confidence 33344443333 1222333332222111 0356779999999776655555565555555677
Q ss_pred cEEEEEcCCh-hHHhhc-CCCceEeCCC
Q 045318 320 SKIIVTTRNQ-SVASMM-GSVSAYELKK 345 (1388)
Q Consensus 320 s~iivTtR~~-~v~~~~-~~~~~~~l~~ 345 (1388)
+.+|++|... .+.... .....+++.+
T Consensus 140 ~~~il~~n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 140 TRFILITNDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred eEEEEEcCChhhccchhhhcceeeecCC
Confidence 8888888742 222211 1124566666
No 217
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.24 E-value=0.00038 Score=85.87 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=32.9
Q ss_pred eeecccCCCCC-Ccc-CCCCCCCcCcEeecCCCCCccCCCC--CC-CCccceeeeccCcchHHHh
Q 045318 1305 FLWIDNFPNLL-RLS-SIENLTSLQFLRFRNCPKLEYFPEN--GL-PTSLLRLQIIACPLMKERC 1364 (1388)
Q Consensus 1305 ~L~l~~~~~l~-~l~-~~~~l~~L~~L~l~~c~~l~~l~~~--~l-~~sL~~L~i~~c~~L~~~~ 1364 (1388)
.+.+.+|+.++ .+. ......+++.|+++.|...+.-.-. .. ...+..+++.+|+.+....
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 35566677663 333 2333344778888877655432111 11 3456777778877655544
No 218
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.23 E-value=0.11 Score=60.05 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCc
Q 045318 187 DDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
+.-.+.+.+.+..... ....+|+|.|.=|+||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~-----~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS-----DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCC-----CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445666777765432 456899999999999999999998763
No 219
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.22 E-value=0.036 Score=59.65 Aligned_cols=171 Identities=25% Similarity=0.262 Sum_probs=94.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC-ccccccCCceEEEEeCCccCH-HHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND-HMVESHFDLKAWTCVSDDFDA-IKVTK 259 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~~~wv~~s~~~~~-~~~~~ 259 (1388)
.++|-.++..++-.++...... +...-|.|+|+.|.|||+|...+..+ +++.++| .-|........ .-.++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~----gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~ 97 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH----GESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALK 97 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh----cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHH
Confidence 4778888888888887654322 22345789999999999999888776 2344444 33333333322 22455
Q ss_pred HHHHHhcCCC----CC----CCcHHHHHHHHHhhc--CCceEEEEEeCCCCCChhhhhh-hccccc----CCCCCcEEEE
Q 045318 260 AILRSICMHT----DA----DDDLNSLQVKLKDGL--SRKKFLLVLDDMWNDNYGDWTS-LRLPFV----AGASGSKIIV 324 (1388)
Q Consensus 260 ~i~~~l~~~~----~~----~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~-l~~~~~----~~~~gs~iiv 324 (1388)
.|.+++..+. .. ......+...+...- .+-++++|+|.++-...-.-.. +...|. ...+-+-|-+
T Consensus 98 ~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~ 177 (408)
T KOG2228|consen 98 GITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGV 177 (408)
T ss_pred HHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEe
Confidence 5555543221 11 122333333333321 1346888888874421111111 111111 1346778889
Q ss_pred EcCChh-------HHhhcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 325 TTRNQS-------VASMMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 325 TtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
|||-.. |-..+.-..++-++.++-++...++++..
T Consensus 178 Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 178 TTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 999743 22223333466677788888888887764
No 220
>PRK12377 putative replication protein; Provisional
Probab=96.21 E-value=0.0062 Score=65.41 Aligned_cols=101 Identities=21% Similarity=0.071 Sum_probs=55.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..+.++|..|+|||+||.++++... .....++++++. +++..+-..... .....+ +.+.+ .+-
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~----~l~~l-~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTVP------DVMSRLHESYDN----GQSGEK----FLQEL-CKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEHH------HHHHHHHHHHhc----cchHHH----HHHHh-cCC
Confidence 5688999999999999999999632 233335665443 444444333321 111111 22222 345
Q ss_pred EEEEEeCCCCCChhhhhh--hcccccCC-CCCcEEEEEcCC
Q 045318 291 FLLVLDDMWNDNYGDWTS--LRLPFVAG-ASGSKIIVTTRN 328 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~--l~~~~~~~-~~gs~iivTtR~ 328 (1388)
=||||||+-......|.. +...+... ...-.+||||..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 699999995543344533 22222221 223457888764
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.20 E-value=0.015 Score=62.06 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=37.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
..-.++.|+|++|+|||++|.+++... ...-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHH
Confidence 445899999999999999999988752 23346789998876 66655544
No 222
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.18 E-value=0.022 Score=62.12 Aligned_cols=57 Identities=16% Similarity=0.098 Sum_probs=40.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCceEEEEeCCccCHHHHHHHHHHHh
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVES----HFDLKAWTCVSDDFDAIKVTKAILRSI 265 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (1388)
..-.++.|+|.+|+|||++|.+++....... .-..++|++....++..++. ++++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~ 77 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERF 77 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHh
Confidence 4458999999999999999999975422222 13678999988877765443 334443
No 223
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.17 E-value=0.031 Score=62.06 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=47.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccc-ccCCceEEEEeCCccC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhh
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVE-SHFDLKAWTCVSDDFD--AIKVTKAILRSICMHTDADDDLNSLQVKLKDG 285 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 285 (1388)
+.++|+|+|++|+||||++..++.....+ +.+ .+..|+.. ++. ..+.+....+.++.......+..++...+.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D-~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTD-TYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECC-ccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc
Confidence 45799999999999999999988753222 222 34444433 332 22333333333443332333444554444443
Q ss_pred cCCceEEEEEeCC
Q 045318 286 LSRKKFLLVLDDM 298 (1388)
Q Consensus 286 l~~k~~LlVlDdv 298 (1388)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777753
No 224
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.15 E-value=0.00093 Score=78.04 Aligned_cols=104 Identities=20% Similarity=0.173 Sum_probs=68.5
Q ss_pred cCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccccc-ccccCcccceeeccCccccccccchhccc
Q 045318 533 SDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISN-TIGDLKHLRHLDLSETLIETLPESVNTLY 611 (1388)
Q Consensus 533 ~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 611 (1388)
.-++.+++| +++.|.+... ..+..+.+|+.|||+.|.+..+|. +.... +|+.|+|++|.+++| ..|.+|+
T Consensus 184 qll~ale~L-----nLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~Lk 254 (1096)
T KOG1859|consen 184 QLLPALESL-----NLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLK 254 (1096)
T ss_pred HHHHHhhhh-----ccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhh
Confidence 335566666 4666655432 255777788888888888877773 22222 388888888888777 3477888
Q ss_pred ccceeecCCCcchh--hcchhhcccCCCCeeecCCCC
Q 045318 612 NLHTLLLESCSRLK--KLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 612 ~L~~L~L~~~~~~~--~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
+|+.||+++|-... ++ .-++.|..|+.|++.||.
T Consensus 255 sL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc
Confidence 88888888763221 11 125677778888888876
No 225
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.14 E-value=0.019 Score=61.94 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=35.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
..-.++.|+|.+|+|||++|.+++... ...-..++|++.. .++...+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHH
Confidence 345899999999999999999998753 2234578899877 5655544
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.17 Score=57.42 Aligned_cols=181 Identities=11% Similarity=0.031 Sum_probs=100.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC---Cc-----eEEEEeCCccCHHHHHH
Q 045318 188 DDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF---DL-----KAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~-----~~wv~~s~~~~~~~~~~ 259 (1388)
...+++...+..+ .-..-+.+.|+.|+||+|+|.+++...--...- .| +-++.....+|...+
T Consensus 9 ~~~~~l~~~~~~~-------rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i-- 79 (334)
T PRK07993 9 PDYEQLVGSYQAG-------RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL-- 79 (334)
T ss_pred HHHHHHHHHHHcC-------CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--
Confidence 3456677777553 233567799999999999998887641100000 00 000001111111100
Q ss_pred HHHHHhcCCCC-CCCcHHHHHHHHHh----hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hhHHh
Q 045318 260 AILRSICMHTD-ADDDLNSLQVKLKD----GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QSVAS 333 (1388)
Q Consensus 260 ~i~~~l~~~~~-~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~ 333 (1388)
..+.. ....++++.+.... -..+++-++|+|+++.-+......+...+-....++.+|.+|.+ ..+..
T Consensus 80 ------~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLp 153 (334)
T PRK07993 80 ------TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLA 153 (334)
T ss_pred ------ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChH
Confidence 00000 11233333332221 12366678999999776666666776666555567776666655 44443
Q ss_pred h-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 334 M-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 334 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
. ......+.+.+++++++.+.+.... + .+ .+.+..++..++|.|..+..+
T Consensus 154 TIrSRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 154 TLRSRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred HHHhccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 3 2223578999999999888776532 1 11 133678899999999655433
No 227
>PRK04296 thymidine kinase; Provisional
Probab=96.08 E-value=0.015 Score=60.53 Aligned_cols=113 Identities=12% Similarity=-0.039 Sum_probs=61.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHhhcCC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDA--DDDLNSLQVKLKDGLSR 288 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 288 (1388)
.++.|+|..|.||||+|..+..... .+-..++.+ ...++.......++++++..... ....+++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~--~~g~~v~i~--k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE--ERGMKVLVF--KPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH--HcCCeEEEE--eccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 5788999999999999988887532 222223333 11112222233445555432211 2233444445544 233
Q ss_pred ceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh
Q 045318 289 KKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS 330 (1388)
Q Consensus 289 k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 330 (1388)
+.-+||+|.+..-+.++..++...+ ...|..||+|.++.+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999443222233333332 246889999999843
No 228
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.08 E-value=0.0015 Score=80.46 Aligned_cols=116 Identities=23% Similarity=0.361 Sum_probs=62.0
Q ss_pred CCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCC-CCccccc----ccccCCCccceEEEccCCCCccCh
Q 045318 967 DISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSC-PSLVKLP----QTLLSLSSLRQLKISECHSMKSLP 1041 (1388)
Q Consensus 967 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~-~~~~~~p----~~~~~l~~L~~L~l~~~~~l~~~p 1041 (1388)
..+.|+.|.+.+|..+....... .....+.|+.|++++| ......+ .....+++|+.|++++|...+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDA-----LALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHH-----HHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 35666666666666555422100 0223556777777663 2221111 223345777777777777444332
Q ss_pred hhhccCCCCCccceeeccCCCccccccc---cCCCCccEEEeecCcCcc
Q 045318 1042 EALMHNDNAPLESLNVVDCNSLTYIARV---QLPPSLKLLHIQSCHDLR 1087 (1388)
Q Consensus 1042 ~~~~~~~l~~L~~L~l~~c~~l~~~~~~---~~~~sL~~L~l~~c~~L~ 1087 (1388)
-......+++|+.|.+.+|..++...-. ...++|++|++++|..+.
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 2222233667777777777654332211 234668888888887663
No 229
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.086 Score=61.29 Aligned_cols=100 Identities=15% Similarity=0.210 Sum_probs=63.6
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLN----ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..+-|.+..+.++.+++..-... .......+=|.++|++|.|||.||++++.+. .- -++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~v-----Pf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GV-----PFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CC-----ceEeecch-----
Confidence 46789999998888876542110 0111345668899999999999999999873 22 23444433
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWN 300 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 300 (1388)
+|+..+.+ .+.+.+.+.+.+..+.-.+++++|+++.
T Consensus 258 ---eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 23333322 2233444455555567899999999965
No 230
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.05 E-value=0.0033 Score=78.00 Aligned_cols=92 Identities=27% Similarity=0.271 Sum_probs=64.8
Q ss_pred chHHHHhh-ccCceeeEEEeCCcccc--ccccccccCcccceeeccCccccccccchhcccccceeecCCCcchh-hcch
Q 045318 554 SDSVVHML-LKLQCLRVLCLREYNIC--KISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLK-KLCA 629 (1388)
Q Consensus 554 ~~~~~~~~-~~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~-~lp~ 629 (1388)
+...+..+ ..++.|+.|.+.+-.+. ++-.-..++++|+.||+|+++|+.+ ..|++|+|||+|.+++=.... ..-.
T Consensus 136 s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~ 214 (699)
T KOG3665|consen 136 SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLI 214 (699)
T ss_pred hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHH
Confidence 33445555 66788888888876553 3334457788899999999998888 778899999999886532221 1123
Q ss_pred hhcccCCCCeeecCCCC
Q 045318 630 DMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 630 ~i~~L~~L~~L~l~~~~ 646 (1388)
.+.+|++|++||++...
T Consensus 215 ~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhcccCCCeeeccccc
Confidence 56788888888888765
No 231
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.02 E-value=0.0093 Score=61.44 Aligned_cols=37 Identities=30% Similarity=0.498 Sum_probs=28.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEE
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWT 246 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 246 (1388)
....+|.+.|+.|+||||+|+.++.. ....+...+++
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 34569999999999999999999975 34445455554
No 232
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.01 E-value=0.025 Score=57.04 Aligned_cols=130 Identities=17% Similarity=0.141 Sum_probs=64.9
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc-ccccCCceEEEEeCC-ccCHHHHHHH
Q 045318 183 VHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM-VESHFDLKAWTCVSD-DFDAIKVTKA 260 (1388)
Q Consensus 183 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~-~~~~~~~~~~ 260 (1388)
+||....+.++.+.+..-.. .. .-|.|+|..|+||+.+|+.+++... -.. -||.+.- ..+.+.+-.+
T Consensus 1 liG~s~~m~~~~~~~~~~a~-----~~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~-----pfi~vnc~~~~~~~~e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS-----SD-LPVLITGETGTGKELLARAIHNNSPRKNG-----PFISVNCAALPEELLESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT-----ST-S-EEEECSTTSSHHHHHHHHHHCSTTTTS------EEEEETTTS-HHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC-----CC-CCEEEEcCCCCcHHHHHHHHHHhhhcccC-----CeEEEehhhhhcchhhhh
Confidence 47888888888887765322 22 3456999999999999999998521 122 2344432 3333333333
Q ss_pred HHHHhcCCCCCC-CcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC-----------CCCcEEEEEcCC
Q 045318 261 ILRSICMHTDAD-DDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG-----------ASGSKIIVTTRN 328 (1388)
Q Consensus 261 i~~~l~~~~~~~-~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iivTtR~ 328 (1388)
+........... ..... .+.+. ..=-|+||+|..-.......+...+..+ ....|||.||..
T Consensus 70 LFG~~~~~~~~~~~~~~G---~l~~A---~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKG---LLEQA---NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSK 143 (168)
T ss_dssp HHEBCSSSSTTTSSEBEH---HHHHT---TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS
T ss_pred hhccccccccccccccCC---ceeec---cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCc
Confidence 322211111111 11111 11121 2236889999776544444444333321 125789998875
Q ss_pred h
Q 045318 329 Q 329 (1388)
Q Consensus 329 ~ 329 (1388)
.
T Consensus 144 ~ 144 (168)
T PF00158_consen 144 D 144 (168)
T ss_dssp -
T ss_pred C
Confidence 3
No 233
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.00 E-value=0.022 Score=56.08 Aligned_cols=117 Identities=16% Similarity=0.099 Sum_probs=60.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC---ccCHHHHHHHHHHHh-----cCC-----CCCCC---c
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD---DFDAIKVTKAILRSI-----CMH-----TDADD---D 274 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l-----~~~-----~~~~~---~ 274 (1388)
..|-|++..|.||||.|....-.. ..+=..+.+|.+-+ ......+++.+ ..+ +.. .+... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra--~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA--LGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 467888999999999997776532 12212334433322 22333333332 000 000 00001 1
Q ss_pred HHHHHHHHHhhcCC-ceEEEEEeCCCCC---ChhhhhhhcccccCCCCCcEEEEEcCChh
Q 045318 275 LNSLQVKLKDGLSR-KKFLLVLDDMWND---NYGDWTSLRLPFVAGASGSKIIVTTRNQS 330 (1388)
Q Consensus 275 ~~~~~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 330 (1388)
..+..+..++.+.. +-=|+|||++-.. ..-+.+.+...+.....+..||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 11233344455544 4449999998221 12234555555555567789999999854
No 234
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.98 E-value=0.0049 Score=58.97 Aligned_cols=22 Identities=45% Similarity=0.516 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
||+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 235
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.98 E-value=0.026 Score=72.91 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=76.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|-+..++.+...+.....+- ..+....++.++|+.|+|||+||+.+.+.. -+.-...+-+.+++-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccH--
Confidence 568999999999988876322110 011234567799999999999999998741 111122333344332221111
Q ss_pred HHHHHhcCCCC--CCCcHHHHHHHHHhhcCCce-EEEEEeCCCCCChhhhhhhcccccCC-----------CCCcEEEEE
Q 045318 260 AILRSICMHTD--ADDDLNSLQVKLKDGLSRKK-FLLVLDDMWNDNYGDWTSLRLPFVAG-----------ASGSKIIVT 325 (1388)
Q Consensus 260 ~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iivT 325 (1388)
.+-++.... ...+...+ .+.++.++ .+++||++...+...+..+...+..+ ...+-||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 111221111 11122223 33333343 58999999887777777776665543 134567777
Q ss_pred cCC
Q 045318 326 TRN 328 (1388)
Q Consensus 326 tR~ 328 (1388)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 764
No 236
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.97 E-value=0.034 Score=60.14 Aligned_cols=91 Identities=12% Similarity=0.049 Sum_probs=54.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCceEEEEeCCccCHHHHHHHHHHHhcCCCC---------CCCc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVES----HFDLKAWTCVSDDFDAIKVTKAILRSICMHTD---------ADDD 274 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~ 274 (1388)
..-.++.|+|.+|+|||++|.+++....... .=..++|++....++...+. ++.+....... ...+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3457999999999999999999876421111 01467899888777765543 33333221100 1234
Q ss_pred HHHHHHHHHhhcC----CceEEEEEeCCC
Q 045318 275 LNSLQVKLKDGLS----RKKFLLVLDDMW 299 (1388)
Q Consensus 275 ~~~~~~~l~~~l~----~k~~LlVlDdv~ 299 (1388)
.+++...+.+... .+--+||+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4455444444432 344589999883
No 237
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.92 E-value=0.025 Score=68.80 Aligned_cols=44 Identities=32% Similarity=0.442 Sum_probs=35.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+++|.+..++.+...+... ...-|.|+|+.|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~--------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP--------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC--------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999988776442 2235679999999999999999864
No 238
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.89 E-value=0.18 Score=57.06 Aligned_cols=94 Identities=13% Similarity=0.186 Sum_probs=63.2
Q ss_pred CceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hhHHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCC
Q 045318 288 RKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QSVASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDF 365 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 365 (1388)
+++-++|+|+++.-+...+..+...+-...+++.+|.+|.+ ..+... ......+.+.++++++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 55668899999887777788877777655567766555544 444433 2223689999999999988887641 1
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 366 SNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 366 ~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
. + ...++..++|.|..+..+.
T Consensus 206 ~--~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 A--D-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred C--h-----HHHHHHHcCCCHHHHHHHH
Confidence 1 1 1235788899997655443
No 239
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.85 E-value=0.025 Score=58.79 Aligned_cols=56 Identities=21% Similarity=0.170 Sum_probs=37.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeC-CccCHHHHHHHHHHHhcCC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVS-DDFDAIKVTKAILRSICMH 268 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s-~~~~~~~~~~~i~~~l~~~ 268 (1388)
+||.++|+.|+||||.+..++.....+ -..+..++.. ......+-++..++.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 799999999999999988888754333 3345566653 2234556677777777654
No 240
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.08 Score=65.17 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=85.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC-----CceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF-----DLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-----~~~~wv~~s~~~~~~ 255 (1388)
+.++||++|++++++.|.....+. + .++|.+|||||++|.-++... +.+.- +..++. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN------P--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-----L--- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN------P--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-----L--- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC------C--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----e---
Confidence 458999999999999998765432 1 478999999999987777641 11111 111211 0
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHH-HHhhcCCceEEEEEeCCCCCC--------hhhhhhhcccccCCCCCcEEEEEc
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVK-LKDGLSRKKFLLVLDDMWNDN--------YGDWTSLRLPFVAGASGSKIIVTT 326 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~--------~~~~~~l~~~~~~~~~gs~iivTt 326 (1388)
++..-+.+.. -..+.++.... +.+.-+.++..+++|.++..- .-+-..+..|....+.--.|-.||
T Consensus 233 ----D~g~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT 307 (786)
T COG0542 233 ----DLGSLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATT 307 (786)
T ss_pred ----cHHHHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEecc
Confidence 1111111111 12233333333 333333458999999985411 012233333333333444555566
Q ss_pred CChhHHhhc-------CCCceEeCCCCChhhHHHHHHHc
Q 045318 327 RNQSVASMM-------GSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 327 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
-++ --+.+ ..-+.+.+..-+.+++..+++..
T Consensus 308 ~~E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDE-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHH-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 432 22221 22257889999999999888754
No 241
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.82 E-value=0.032 Score=59.86 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=32.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD 253 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (1388)
..-.++.|.|.+|+||||+|.+++... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 345899999999999999999998752 22234567887655553
No 242
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.79 E-value=0.037 Score=60.26 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=72.6
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCc-cccccCCceEE----EEeCCccC----
Q 045318 183 VHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDH-MVESHFDLKAW----TCVSDDFD---- 253 (1388)
Q Consensus 183 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~w----v~~s~~~~---- 253 (1388)
+-+|..+-.--+++|+. +.+..|.+.|.+|.|||.||-+..=.+ ..+..|..++- |.+.++..
T Consensus 226 i~prn~eQ~~ALdlLld--------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 226 IRPRNAEQRVALDLLLD--------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred cCcccHHHHHHHHHhcC--------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCC
Confidence 34566666777777776 567899999999999999986654322 22344433221 22332211
Q ss_pred -----HHHHHHHHHHHhcCCCC-CCCcHHHHHHHH---------HhhcCCc---eEEEEEeCCCCCChhhhhhhcccccC
Q 045318 254 -----AIKVTKAILRSICMHTD-ADDDLNSLQVKL---------KDGLSRK---KFLLVLDDMWNDNYGDWTSLRLPFVA 315 (1388)
Q Consensus 254 -----~~~~~~~i~~~l~~~~~-~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~~~~ 315 (1388)
+.-..+.|..-+..-.. .....+.+...+ -.+.+|+ .-+||+|...+-.+.+...+ +..
T Consensus 298 ~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTi---ltR 374 (436)
T COG1875 298 TEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTI---LTR 374 (436)
T ss_pred chhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHH---HHh
Confidence 11122333322211111 111111111111 1223443 45899999966555444444 444
Q ss_pred CCCCcEEEEEcCChh
Q 045318 316 GASGSKIIVTTRNQS 330 (1388)
Q Consensus 316 ~~~gs~iivTtR~~~ 330 (1388)
.+.||||+.|--..+
T Consensus 375 ~G~GsKIVl~gd~aQ 389 (436)
T COG1875 375 AGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccCCCEEEEcCCHHH
Confidence 579999999985433
No 243
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.76 E-value=0.025 Score=61.09 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccC-CceEEEEeCCccC-HHHHHHHHHHHhcCC-------CCCCCcHH----
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHF-DLKAWTCVSDDFD-AIKVTKAILRSICMH-------TDADDDLN---- 276 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~---- 276 (1388)
-..++|.|..|+||||||+.+++. ++.+| +.++++-+.+... +.++.+++.+.-... ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 357899999999999999999987 33344 4556666666543 445555544321111 01111111
Q ss_pred -HHHHHHHhhc---CCceEEEEEeCC
Q 045318 277 -SLQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 277 -~~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
...-.+.+++ +++.+|+|+||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344444 389999999999
No 244
>PRK04132 replication factor C small subunit; Provisional
Probab=95.75 E-value=0.18 Score=63.56 Aligned_cols=152 Identities=13% Similarity=0.044 Sum_probs=93.2
Q ss_pred CCCChHHHHHHHHhcCccccccC-CceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEe
Q 045318 218 MGGLGKTTLAQLVYNDHMVESHF-DLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLD 296 (1388)
Q Consensus 218 ~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlD 296 (1388)
|.++||||+|.+++++.- ...+ ...+-+++|+..+... ++++++.+..... .-..+.-++|+|
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid~-IR~iIk~~a~~~~--------------~~~~~~KVvIID 637 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGINV-IREKVKEFARTKP--------------IGGASFKIIFLD 637 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC--------------cCCCCCEEEEEE
Confidence 788999999999998621 1122 2345566666555543 3444443321110 001245799999
Q ss_pred CCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hhHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHH
Q 045318 297 DMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QSVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEI 374 (1388)
Q Consensus 297 dv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 374 (1388)
+++.-+.+.+..+...+-.....+++|.+|.+ ..+.... .....+++.++++++-.+.+.+.+-.. ....+ .+.
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E-gi~i~---~e~ 713 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE-GLELT---EEG 713 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc-CCCCC---HHH
Confidence 99887767777777666554456666666654 3333222 223689999999999888777654211 11111 356
Q ss_pred HHHHHHHcCCChHHH
Q 045318 375 GEEILKKCNGLPLAA 389 (1388)
Q Consensus 375 ~~~i~~~c~g~Plai 389 (1388)
...|++.++|-+-.+
T Consensus 714 L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 714 LQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHcCCCHHHH
Confidence 789999999977443
No 245
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.75 E-value=0.044 Score=65.18 Aligned_cols=182 Identities=13% Similarity=0.079 Sum_probs=90.0
Q ss_pred CccccchhhHHHHHHHHhc--CCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLN--DDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~--~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
..+.|.+..++.+.+.... .......-...+-|.++|++|+|||.+|+++++.. ...| +-+..+ .+
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~--~~~~---~~l~~~------~l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW--QLPL---LRLDVG------KL- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEEhH------Hh-
Confidence 3577877776666543211 00000000234668899999999999999999862 2222 111111 11
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh-------h-hh----hhhcccccCCCCCcEEEEEc
Q 045318 259 KAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY-------G-DW----TSLRLPFVAGASGSKIIVTT 326 (1388)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~-~~----~~l~~~~~~~~~gs~iivTt 326 (1388)
.....+ .....+...+...-...+++|++|+++.... . .- ..+...+.....+--||.||
T Consensus 296 ---~~~~vG-----ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 296 ---FGGIVG-----ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred ---cccccC-----hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 111000 0111222222222235789999999953110 0 00 11111122223344566777
Q ss_pred CChhHH-hhc----CCCceEeCCCCChhhHHHHHHHcccCCCCC-CCCchHHHHHHHHHHHcCCCh
Q 045318 327 RNQSVA-SMM----GSVSAYELKKLTDDDCRLVFTQHSLGTKDF-SNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 327 R~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~-~~~~~~~~~~~~i~~~c~g~P 386 (1388)
....-. ..+ .-+..+.+..-+.++-.++|..+....... ....+ ...+++.+.|.-
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 654321 111 233578888889999999998876332111 11112 355666776653
No 246
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.74 E-value=0.023 Score=64.03 Aligned_cols=102 Identities=18% Similarity=0.207 Sum_probs=54.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.-+.++|..|+|||.||.++++... ...+ .++++++ .+++..+...-. . ...+.... + +.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~g~-~V~y~t~------~~l~~~l~~~~~-~--~~~~~~~~---~-~~l~-~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DRGK-SVIYRTA------DELIEILREIRF-N--NDKELEEV---Y-DLLI-NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HCCC-eEEEEEH------HHHHHHHHHHHh-c--cchhHHHH---H-HHhc-cC
Confidence 5689999999999999999998632 2222 4555543 333333322111 1 11111111 1 2222 22
Q ss_pred EEEEEeCCCCCChhhhhh--hcccccCC-CCCcEEEEEcCC
Q 045318 291 FLLVLDDMWNDNYGDWTS--LRLPFVAG-ASGSKIIVTTRN 328 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~--l~~~~~~~-~~gs~iivTtR~ 328 (1388)
=|||+||+-.....+|.. +...+... ..+-.+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 389999996554344422 22222211 235568888875
No 247
>PRK06696 uridine kinase; Validated
Probab=95.74 E-value=0.013 Score=62.95 Aligned_cols=44 Identities=27% Similarity=0.340 Sum_probs=35.5
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 185 GRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 185 Gr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|++-+++|.+.+..... +...+|+|.|.+|+||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~-----~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL-----TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhCC-----CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 366777888888765322 56789999999999999999999975
No 248
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.68 E-value=0.037 Score=62.00 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=43.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCceEEEEeCCccCHHHHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVE----SHFDLKAWTCVSDDFDAIKVTKAILRSICM 267 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (1388)
..-.++-|+|++|+|||+++.+++-..... ..=..++||+....|+++++.+ ++++++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 345899999999999999998877432221 1124789999999998888754 5666654
No 249
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.037 Score=65.17 Aligned_cols=189 Identities=14% Similarity=0.177 Sum_probs=108.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
+++||-+.-...|...+..... ..--...|+-|+||||+|+-++....-.. | ....++..=..-++
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-------~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~ 81 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-------AHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKE 81 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-------hhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHh
Confidence 4579999999999998876432 12345789999999999999987522111 0 11111111111122
Q ss_pred HHHH-----hcCCCCCCCcHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh-h
Q 045318 261 ILRS-----ICMHTDADDDLNSLQVKLKDG----LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ-S 330 (1388)
Q Consensus 261 i~~~-----l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~-~ 330 (1388)
|... +..+......++++.+.+.+. .++|.=+.|+|.|+--....|..+..-+-.....-+.|..|.+. .
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 2111 000011122333333222222 23555689999998777778888877665555666666666553 3
Q ss_pred HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH
Q 045318 331 VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL 387 (1388)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 387 (1388)
+... ....+.|.++.++.++-...+...+- .+.... ..+....|++...|..-
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~-~E~I~~---e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILD-KEGINI---EEDALSLIARAAEGSLR 215 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHH-hcCCcc---CHHHHHHHHHHcCCChh
Confidence 3322 23336799999999988877776652 222222 23556777788877553
No 250
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.66 E-value=0.12 Score=66.39 Aligned_cols=181 Identities=14% Similarity=0.127 Sum_probs=94.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|.+..++++.+.+..+.... ......+-|.++|++|+|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 457788888887777654211000 00023345789999999999999999986 22233 222211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC--------hh----hhhhhcccccC--CCCCcE
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN--------YG----DWTSLRLPFVA--GASGSK 321 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~----~~~~l~~~~~~--~~~gs~ 321 (1388)
+ ++....+ .....+...+...-+....+|++|+++.-. .. ....+...+.. ...+--
T Consensus 522 ~----l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~ 592 (733)
T TIGR01243 522 E----ILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVV 592 (733)
T ss_pred H----HhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEE
Confidence 1 1111111 111122222223334567899999985310 00 01122222221 123456
Q ss_pred EEEEcCChhHHhh-c----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 322 IIVTTRNQSVASM-M----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 322 iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
||.||...+.... + .-+..+.+...+.++-.++|..+.-+ .......+ ...+++.+.|.-
T Consensus 593 vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~-~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 593 VIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS-MPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC-CCCCccCC----HHHHHHHcCCCC
Confidence 7777766543321 1 22357889999999999998765422 21122222 345667777753
No 251
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.63 E-value=0.079 Score=67.94 Aligned_cols=181 Identities=13% Similarity=0.122 Sum_probs=90.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC-----CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLN-----ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|.+..++++.+++...... ...-...+-|.++|++|+||||+|+++++. ....| +.+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~-----i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF-----ISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE-----EEEecH----
Confidence 35889999999888776422100 000023356889999999999999999985 22222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh-----------hhhhhhcccccCC-CCCcEEE
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY-----------GDWTSLRLPFVAG-ASGSKII 323 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~~~~~-~~gs~ii 323 (1388)
++. .... ......+...+.........+|++|+++.... .....+...+... ..+..++
T Consensus 247 ~i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 247 EIM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred HHh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 111 1000 01112223333333345668999999844210 0111222222111 2233344
Q ss_pred E-EcCChh-HHhhcC----CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 324 V-TTRNQS-VASMMG----SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 324 v-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
| ||.... +...+. -...+.+...+.++-.+++..+.- ......+ .....+++.+.|.-
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~-~~~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR-NMPLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc-CCCCccc----cCHHHHHHhCCCCC
Confidence 4 554432 211111 124677888888888888875531 1111111 12456777787754
No 252
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.63 E-value=0.031 Score=62.16 Aligned_cols=84 Identities=19% Similarity=0.133 Sum_probs=54.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKL 282 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 282 (1388)
+.-+++-|+|++|+||||||.+++... ...-..++|++....+++. .+++++...+ ...+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 445899999999999999999987652 2334568898887776653 3344433211 223445555555
Q ss_pred HhhcC-CceEEEEEeCC
Q 045318 283 KDGLS-RKKFLLVLDDM 298 (1388)
Q Consensus 283 ~~~l~-~k~~LlVlDdv 298 (1388)
...++ +.--+||+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 44443 45568999987
No 253
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.62 E-value=0.034 Score=61.88 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=54.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKL 282 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 282 (1388)
+.-+++-|+|++|+||||||.++.... ...-..++|+..-+.++.. .+++++.... .....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 455899999999999999999887653 2233567888777666553 3444443211 223445555555
Q ss_pred HhhcC-CceEEEEEeCC
Q 045318 283 KDGLS-RKKFLLVLDDM 298 (1388)
Q Consensus 283 ~~~l~-~k~~LlVlDdv 298 (1388)
...++ +.--+||+|-|
T Consensus 126 ~~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHHhhccCCcEEEEcch
Confidence 44443 45669999998
No 254
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.57 E-value=0.0061 Score=37.43 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=8.0
Q ss_pred cceeeccCccccccccch
Q 045318 590 LRHLDLSETLIETLPESV 607 (1388)
Q Consensus 590 Lr~L~L~~~~i~~lp~~i 607 (1388)
|++|+|++|.++.+|.+|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444433
No 255
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.56 E-value=0.041 Score=69.15 Aligned_cols=122 Identities=16% Similarity=0.073 Sum_probs=67.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|-++.++.+.+.+.....+- ........+.++|+.|+|||++|+.++... .. ..+.+.+++-....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~~---~~i~id~se~~~~~---- 528 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--GI---ELLRFDMSEYMERH---- 528 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--CC---CcEEeechhhcccc----
Confidence 358899999999888876421110 001234578999999999999999998752 22 22344443322211
Q ss_pred HHHHHhcCCCCC--CCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhccccc
Q 045318 260 AILRSICMHTDA--DDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFV 314 (1388)
Q Consensus 260 ~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~ 314 (1388)
.+.+-++..... ......+...++ +....+|+||++.....+.+..+...+.
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred cHHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 111112221110 111112222222 1334699999998877666776665554
No 256
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.54 E-value=0.2 Score=48.78 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhccc-CcHHHHHHHHHHHHHHhhhhhH
Q 045318 4 IGEAILGAAIEMLFKKLMSADLLQFARQEQIQADLKKWERILFKIHAVLDDADEKQM-TKQSVRLWLRELKNLAYDVEDI 82 (1388)
Q Consensus 4 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~~yd~ed~ 82 (1388)
+|+.+++||+|.+++.+...+.....+...++.-+++|+.++..|..++++-+.... -+..-+.-++++.+...+++++
T Consensus 2 ~~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 2 IAELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 345555555555555555555556666678899999999999999999998776432 2333467788899999999999
Q ss_pred Hhhhh
Q 045318 83 LDEFS 87 (1388)
Q Consensus 83 ld~~~ 87 (1388)
++.|.
T Consensus 82 V~k~s 86 (147)
T PF05659_consen 82 VEKCS 86 (147)
T ss_pred HHHhc
Confidence 98873
No 257
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.54 E-value=0.045 Score=64.97 Aligned_cols=75 Identities=25% Similarity=0.294 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhc-
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGL- 286 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l- 286 (1388)
+.-++..++|++|.||||||.-|+++ ..| .++-|.+|+..++..+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkq----aGY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~ 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQ----AGY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VLD 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHh----cCc-eEEEecccccccHHHHHHHHHHHHhhcc---------------ccc
Confidence 45689999999999999999999985 233 3566788888888777777666654332 22
Q ss_pred -CCceEEEEEeCCCCCC
Q 045318 287 -SRKKFLLVLDDMWNDN 302 (1388)
Q Consensus 287 -~~k~~LlVlDdv~~~~ 302 (1388)
.++..-+|+|.++...
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 2677889999997655
No 258
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.53 E-value=0.013 Score=58.17 Aligned_cols=98 Identities=23% Similarity=0.306 Sum_probs=68.0
Q ss_pred ceeeEEEeCCccccccccccccCcccceeeccCccccccccchh-cccccceeecCCCcchhhcc--hhhcccCCCCeee
Q 045318 565 QCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVN-TLYNLHTLLLESCSRLKKLC--ADMGNLIKLRHLN 641 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~ 641 (1388)
.....+||++|.+..++ .+..+..|.+|.|.+|.|..+-..+. .+++|++|.|.+|+ +..+. ..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 45677889999888774 46788889999999999998855554 55679999998874 33332 2366788888888
Q ss_pred cCCCCCcccCc---CCCCCCCCCCCC
Q 045318 642 NYNVPLLEGMP---LRIGHLSCLQTL 664 (1388)
Q Consensus 642 l~~~~~~~~~p---~~i~~L~~L~~L 664 (1388)
+-+|.....-- .-+.++++|++|
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~L 145 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTL 145 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEe
Confidence 88887332211 125556666666
No 259
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.52 E-value=0.1 Score=53.84 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=62.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEE---eCCccCHHHHHH------HHHHHhcCCCC-----CCCcH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTC---VSDDFDAIKVTK------AILRSICMHTD-----ADDDL 275 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~~-----~~~~~ 275 (1388)
-.+++|+|..|.|||||.+.++... ......+++. +. ..+...... ++++.++.... ..-+.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 3689999999999999999999752 1223333332 11 112222111 23444443211 11111
Q ss_pred H-HHHHHHHhhcCCceEEEEEeCCCC-CChhhhhhhcccccCC-CC-CcEEEEEcCChhHH
Q 045318 276 N-SLQVKLKDGLSRKKFLLVLDDMWN-DNYGDWTSLRLPFVAG-AS-GSKIIVTTRNQSVA 332 (1388)
Q Consensus 276 ~-~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~~~~~-~~-gs~iivTtR~~~v~ 332 (1388)
. ...-.+.+.+-..+-++++|+--. -+....+.+...+..- .. |..||++|.+....
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1 222334555666778899998733 2223333443333321 22 66788888876654
No 260
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.51 E-value=0.12 Score=53.30 Aligned_cols=156 Identities=20% Similarity=0.198 Sum_probs=84.1
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 181 AEVHGRDDDKK---AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 181 ~~~vGr~~~~~---~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
+++||.++.+. -|+++|..++.= .+-..+-|..+|++|.|||-+|+++++...+ -| +.|. ..++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~F--g~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at~l 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERF--GDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----ATEL 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHh--cccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hHHH
Confidence 46889887664 355666544311 1145678999999999999999999997332 22 2221 1111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCCC--------hhhh----hhhcccccC--CCCCcEE
Q 045318 258 TKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWNDN--------YGDW----TSLRLPFVA--GASGSKI 322 (1388)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~--------~~~~----~~l~~~~~~--~~~gs~i 322 (1388)
+. +.++ +-......+.+ .-+.-.+++.+|.++... ..+. ..+...+.. .+.|-.-
T Consensus 188 iG---ehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 188 IG---EHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred HH---HHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 11 1111 11111222222 223467899999875311 1112 222222221 2456666
Q ss_pred EEEcCChhHHhhc-CC--CceEeCCCCChhhHHHHHHHcc
Q 045318 323 IVTTRNQSVASMM-GS--VSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 323 ivTtR~~~v~~~~-~~--~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
|..|...+..... .+ ...++..--+++|-.+++...+
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 7777665544321 11 1346666667888888888776
No 261
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.49 E-value=0.082 Score=53.81 Aligned_cols=122 Identities=19% Similarity=0.160 Sum_probs=63.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc---ccccc---CC--ceEEEEeCCccCHHHHHHHHHHHhcCCCC----CCC--cH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDH---MVESH---FD--LKAWTCVSDDFDAIKVTKAILRSICMHTD----ADD--DL 275 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~---F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----~~~--~~ 275 (1388)
-.+++|+|+.|.|||||.+.+..+. .+... |. ...|+ .+ .+.++.++.... ... +.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3689999999999999999986421 11111 11 12232 22 345566554321 111 11
Q ss_pred H-HHHHHHHhhcCCc--eEEEEEeCCCCC-ChhhhhhhcccccCC-CCCcEEEEEcCChhHHhhcCCCceEeC
Q 045318 276 N-SLQVKLKDGLSRK--KFLLVLDDMWND-NYGDWTSLRLPFVAG-ASGSKIIVTTRNQSVASMMGSVSAYEL 343 (1388)
Q Consensus 276 ~-~~~~~l~~~l~~k--~~LlVlDdv~~~-~~~~~~~l~~~~~~~-~~gs~iivTtR~~~v~~~~~~~~~~~l 343 (1388)
. ...-.+.+.+-.+ .-++++|+--.. +....+.+...+... ..|..||++|.+.+.... .+.++.+
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 1 2222344445555 668888987332 222333333333221 246778888888776542 3444444
No 262
>PRK09354 recA recombinase A; Provisional
Probab=95.46 E-value=0.047 Score=61.32 Aligned_cols=85 Identities=18% Similarity=0.125 Sum_probs=56.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKL 282 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 282 (1388)
+.-+++-|+|+.|+||||||.+++... ...-..++||..-..++.. .+++++.... .....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 455899999999999999999988653 2334578899888777753 3444443211 123345555555
Q ss_pred HhhcC-CceEEEEEeCCC
Q 045318 283 KDGLS-RKKFLLVLDDMW 299 (1388)
Q Consensus 283 ~~~l~-~k~~LlVlDdv~ 299 (1388)
...++ ++--+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55443 456699999983
No 263
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.44 E-value=0.03 Score=61.05 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=40.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccc----cCCceEEEEeCCccCHHHHHHHHHHHhc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVES----HFDLKAWTCVSDDFDAIKVTKAILRSIC 266 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (1388)
-.|.=|+|.+|+|||.|+.+++-...+.. .=..++|++-...|+..++. +|+++..
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 46889999999999999988875432222 22468999999999987765 4666543
No 264
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.43 E-value=0.042 Score=62.55 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc--CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF--DAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
-.+++++|+.|+||||++..+......+.....+..++ .+.+ ...+-++...+.++.......+..++...+. .+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-ELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH-Hhc
Confidence 46899999999999999999987532221122344444 3333 3445555555555544332223333333333 334
Q ss_pred CceEEEEEeCCC
Q 045318 288 RKKFLLVLDDMW 299 (1388)
Q Consensus 288 ~k~~LlVlDdv~ 299 (1388)
++ -+|++|..-
T Consensus 215 ~~-DlVLIDTaG 225 (374)
T PRK14722 215 NK-HMVLIDTIG 225 (374)
T ss_pred CC-CEEEEcCCC
Confidence 44 456689873
No 265
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.39 E-value=0.042 Score=59.71 Aligned_cols=80 Identities=23% Similarity=0.260 Sum_probs=47.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.-+.++|.+|+|||.||.++.++.- +..+ .+.+++ ..+++.++...... .. ....+.+.++ +-
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~------~~el~~~Lk~~~~~----~~----~~~~l~~~l~-~~ 168 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFIT------APDLLSKLKAAFDE----GR----LEEKLLRELK-KV 168 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEE------HHHHHHHHHHHHhc----Cc----hHHHHHHHhh-cC
Confidence 4578999999999999999999743 3323 344443 44555555554432 11 1112222221 22
Q ss_pred EEEEEeCCCCCChhhhh
Q 045318 291 FLLVLDDMWNDNYGDWT 307 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~ 307 (1388)
=||||||+-......|.
T Consensus 169 dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 169 DLLIIDDIGYEPFSQEE 185 (254)
T ss_pred CEEEEecccCccCCHHH
Confidence 38999999664444443
No 266
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.37 E-value=0.076 Score=59.97 Aligned_cols=59 Identities=17% Similarity=0.115 Sum_probs=43.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccc----cccCCceEEEEeCCccCHHHHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMV----ESHFDLKAWTCVSDDFDAIKVTKAILRSICM 267 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (1388)
..-.+.-|+|.+|+|||+|+.+++-.... ...-..++|++....|++.++.+ +++.++.
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 34588999999999999999988643222 12224789999999999888654 5666654
No 267
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.37 E-value=0.089 Score=54.24 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|..|.|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999875
No 268
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.37 E-value=0.099 Score=51.52 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=54.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.+++|+|..|.|||||++.+..... .....+|+.-. ..+..... -..-+...-.+.+.+..+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~-------------~~i~~~~~-lS~G~~~rv~laral~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGST-------------VKIGYFEQ-LSGGEKMRLALAKLLLENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCe-------------EEEEEEcc-CCHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999987532 12233332110 00000000 0111112223445555566
Q ss_pred EEEEEeCCCC-CChhhhhhhcccccCCCCCcEEEEEcCChhHHh
Q 045318 291 FLLVLDDMWN-DNYGDWTSLRLPFVAGASGSKIIVTTRNQSVAS 333 (1388)
Q Consensus 291 ~LlVlDdv~~-~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 333 (1388)
-++++|+--. -+......+...+... +..||++|.+.+...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 7899998733 2223334443333322 246788887765554
No 269
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.37 E-value=0.014 Score=57.28 Aligned_cols=108 Identities=16% Similarity=0.074 Sum_probs=60.3
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-cccCCceEEEEeCCccCHHHHHHHHH
Q 045318 184 HGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV-ESHFDLKAWTCVSDDFDAIKVTKAIL 262 (1388)
Q Consensus 184 vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (1388)
||+-..++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|... .... ..
T Consensus 1 vG~S~~~~~l~~~l~~~a------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-LP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC-TC---------
T ss_pred CCCCHHHHHHHHHHHHHh------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh-Cc---------
Confidence 466666666666654321 12245689999999999999999986322 1222110 0000 00
Q ss_pred HHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC-CCCcEEEEEcCCh
Q 045318 263 RSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG-ASGSKIIVTTRNQ 329 (1388)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-~~gs~iivTtR~~ 329 (1388)
.+.+.+ . +.--++++|+..-.......+...+... ....|+|.||+..
T Consensus 62 ----------------~~~l~~-a--~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ----------------AELLEQ-A--KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ----------------HHHHHH-C--TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ----------------HHHHHH-c--CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 1 3446889999776666666666555432 5678999999753
No 270
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.32 Score=57.67 Aligned_cols=53 Identities=19% Similarity=0.136 Sum_probs=36.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+-|-++-+.++.+.+..+.... -.-...+-|..+|++|.|||++|+++++.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne 491 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE 491 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence 445667777777766554321110 01134567889999999999999999996
No 271
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.33 E-value=0.075 Score=59.91 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhc
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD--AIKVTKAILRSICMHTDADDDLNSLQVKLKDGL 286 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (1388)
+.++|+++|++|+||||++..++.... ...+ .+..++ .+.+. ..+-++...+.++.......+...+.+.+...-
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~-aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFIT-TDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEe-cCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 457999999999999999999986422 2222 233443 33333 222233333344333222334455554444332
Q ss_pred CC-ceEEEEEeCC
Q 045318 287 SR-KKFLLVLDDM 298 (1388)
Q Consensus 287 ~~-k~~LlVlDdv 298 (1388)
.. +.=+|++|-.
T Consensus 317 ~~~~~DvVLIDTa 329 (436)
T PRK11889 317 EEARVDYILIDTA 329 (436)
T ss_pred hccCCCEEEEeCc
Confidence 21 2346777866
No 272
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.31 E-value=0.16 Score=57.50 Aligned_cols=71 Identities=7% Similarity=0.036 Sum_probs=43.3
Q ss_pred CceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh-HHhhc-CCCceEeCCCCChhhHHHHHHHc
Q 045318 288 RKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS-VASMM-GSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
+++-++|+|++..-+......+...+.....++.+|++|.+.. +.... .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688876655555555544443334566777776643 43322 22357899999999988777653
No 273
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.002 Score=66.55 Aligned_cols=101 Identities=22% Similarity=0.189 Sum_probs=53.4
Q ss_pred CceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcc--hhhcccCCCCeee
Q 045318 564 LQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLC--ADMGNLIKLRHLN 641 (1388)
Q Consensus 564 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~ 641 (1388)
+.+.+.|++.||.+..+ ..+.+|..|++|.||-|+|+.|- .+..+++|+.|.|+.|. +..+. .-+.+|++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 33445555666665554 23345666666666666666662 25566666666666552 22221 2345666677777
Q ss_pred cCCCCCcccCcC-----CCCCCCCCCCCCce
Q 045318 642 NYNVPLLEGMPL-----RIGHLSCLQTLPYF 667 (1388)
Q Consensus 642 l~~~~~~~~~p~-----~i~~L~~L~~L~~~ 667 (1388)
+..|.....-+. .+.-|++|+.|+..
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhccCc
Confidence 666653333222 13445666666443
No 274
>PRK13695 putative NTPase; Provisional
Probab=95.23 E-value=0.021 Score=58.62 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998875
No 275
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.22 E-value=0.019 Score=59.91 Aligned_cols=105 Identities=19% Similarity=0.135 Sum_probs=54.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhc----
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGL---- 286 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l---- 286 (1388)
+++.|.|++|+||||+++.+.......+ ..+.+......-...+.+ ..+.. ...+.. .+...-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~apT~~Aa~~L~~----~~~~~---a~Ti~~---~l~~~~~~~~ 85 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAPTNKAAKELRE----KTGIE---AQTIHS---FLYRIPNGDD 85 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEESSHHHHHHHHH----HHTS----EEEHHH---HTTEECCEEC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECCcHHHHHHHHH----hhCcc---hhhHHH---HHhcCCcccc
Confidence 5788999999999999999887532222 233443333322333222 22211 111111 111110
Q ss_pred -----CCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh
Q 045318 287 -----SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS 330 (1388)
Q Consensus 287 -----~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 330 (1388)
..++-+||+|++.-.+...+..+...... .|+|+|+.--..+
T Consensus 86 ~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 86 EGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred cccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 12335999999977766677776655543 5778887664443
No 276
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.22 E-value=0.014 Score=68.53 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=40.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+++|.++.+++|++.|.....+. ..+-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl--~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGL--EEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhc--CCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999984322111 134479999999999999999999984
No 277
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.092 Score=59.93 Aligned_cols=100 Identities=21% Similarity=0.268 Sum_probs=57.7
Q ss_pred Cccccch---hhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRD---DDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~---~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
.++-|-| +|+++|+++|.++..-. ..-.-.+=|.++|++|.|||-||++|+-...+- +|......|+.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdE-- 375 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDE-- 375 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhh--
Confidence 3566776 56678888887653200 000334668899999999999999999864332 22233333331
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWN 300 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 300 (1388)
++--. ...++.+.+...-+.-.++|.+|.++.
T Consensus 376 ----m~VGv--------GArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 ----MFVGV--------GARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ----hhhcc--------cHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 11111 112222333333345689999999865
No 278
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.20 E-value=0.095 Score=53.58 Aligned_cols=124 Identities=20% Similarity=0.151 Sum_probs=61.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC--ccCHHHHHHHHHHHhcCCCCC----C-------CcHHH
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD--DFDAIKVTKAILRSICMHTDA----D-------DDLNS 277 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~----~-------~~~~~ 277 (1388)
.+++|+|+.|.|||||.+.++.-.. .....+++.-.. ....... ...++..... . -+..+
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHHH
Confidence 6899999999999999999987522 222333321100 0011111 1111100000 0 11111
Q ss_pred -HHHHHHhhcCCceEEEEEeCCCCC-ChhhhhhhcccccCCCCCcEEEEEcCChhHHhhcCCCceEeC
Q 045318 278 -LQVKLKDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMMGSVSAYEL 343 (1388)
Q Consensus 278 -~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l 343 (1388)
..-.+.+.+-.+.-++++|+-... +......+...+.....+..||++|.+...... .++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh--CCEEEEE
Confidence 122344555567779999987432 222233333333222235678888888766653 3344443
No 279
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.11 Score=64.95 Aligned_cols=138 Identities=15% Similarity=0.138 Sum_probs=77.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|-++.+..|.+.+.....+...........+.|+.|+|||-||++++.. +-+..+..+-++.|+ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhh------hhh-
Confidence 35778888888888887654322111125678889999999999999999874 322233334443332 222
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceE-EEEEeCCCCCChhhhhhhcccccCC----------CCCcEEEEEcCCh
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKF-LLVLDDMWNDNYGDWTSLRLPFVAG----------ASGSKIIVTTRNQ 329 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~----------~~gs~iivTtR~~ 329 (1388)
..++.+....-.. .+....+-+.++.+.| +|.||||...+......+...+..+ ..+..|+|-|.+-
T Consensus 633 -vskligsp~gyvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 633 -VSKLIGSPPGYVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNV 710 (898)
T ss_pred -hhhccCCCccccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEeccc
Confidence 2333222221111 1112245566666665 6778999877766665554444433 1234566666553
No 280
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.05 Score=58.04 Aligned_cols=79 Identities=11% Similarity=0.188 Sum_probs=48.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc--cccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDH--MVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
-++|.++|++|.|||+|.+++++.. |..+.|.....+.+... .++. ....+ ..+-+..+.+.+.+.+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFS----KWFsE--SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFS----KWFSE--SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHH----HHHhh--hhhHHHHHHHHHHHHHh
Confidence 3789999999999999999999874 33455544444444322 1222 11111 12334556666666666
Q ss_pred Cce--EEEEEeCC
Q 045318 288 RKK--FLLVLDDM 298 (1388)
Q Consensus 288 ~k~--~LlVlDdv 298 (1388)
++. +.+.+|.|
T Consensus 247 d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 247 DRGNLVFVLIDEV 259 (423)
T ss_pred CCCcEEEEEeHHH
Confidence 554 45557888
No 281
>PHA02244 ATPase-like protein
Probab=95.16 E-value=0.067 Score=59.93 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-|.|+|+.|+|||++|+++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999985
No 282
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.13 E-value=0.095 Score=56.53 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999875
No 283
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.12 E-value=0.16 Score=51.52 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=57.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccc-ccc--CC---ceEEEEeCCccCH--HHHHHHHHHHhcCCCCCCCcHHHHHHHH
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMV-ESH--FD---LKAWTCVSDDFDA--IKVTKAILRSICMHTDADDDLNSLQVKL 282 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~--F~---~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l 282 (1388)
.+++|+|..|.|||||++.+...... .+. ++ .+.+ +.+.... ..+...+... ....-..-+...-.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~--~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~l 102 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLF--LPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAF 102 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEE--ECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHH
Confidence 68999999999999999999875321 111 11 1222 2333211 1222222110 111111112222334
Q ss_pred HhhcCCceEEEEEeCCCCC-ChhhhhhhcccccCCCCCcEEEEEcCChhHHh
Q 045318 283 KDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVAGASGSKIIVTTRNQSVAS 333 (1388)
Q Consensus 283 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 333 (1388)
.+.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 4555566678899976321 222233333333222 356788887766543
No 284
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.12 E-value=0.0021 Score=64.61 Aligned_cols=87 Identities=14% Similarity=0.123 Sum_probs=75.7
Q ss_pred HhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCC
Q 045318 559 HMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLR 638 (1388)
Q Consensus 559 ~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~ 638 (1388)
..+..++..++||++.|.+..+-..|..++.|..|+++.|.|..+|..++.+..+..+++..| .....|.+++.+++++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcc
Confidence 345677888999999999888888888999999999999999999999999999999998775 6778899999999999
Q ss_pred eeecCCCC
Q 045318 639 HLNNYNVP 646 (1388)
Q Consensus 639 ~L~l~~~~ 646 (1388)
++++-++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 99888876
No 285
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.11 E-value=0.071 Score=60.03 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=40.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCceEEEEeCCccCHHHHHHHHHHHhc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVES----HFDLKAWTCVSDDFDAIKVTKAILRSIC 266 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (1388)
....++.|+|.+|+||||++..++....... .-..++|++....++..++ .++++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 4458999999999999999998875322211 1235799998888887764 44555544
No 286
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.10 E-value=0.012 Score=36.08 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=18.7
Q ss_pred eeeEEEeCCccccccccccccC
Q 045318 566 CLRVLCLREYNICKISNTIGDL 587 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp~~i~~l 587 (1388)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4899999999999999877654
No 287
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.02 E-value=0.042 Score=56.58 Aligned_cols=78 Identities=23% Similarity=0.181 Sum_probs=43.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhc--CCCCCCCcHHHHHHHHHhh
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSIC--MHTDADDDLNSLQVKLKDG 285 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~~~ 285 (1388)
.++.+|+|.|.+|.||||+|+.++.. ++..+ ++-++. +++-...-.....+... .....+-+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 35689999999999999999999985 33221 111111 11111111111111111 1122455677777778888
Q ss_pred cCCce
Q 045318 286 LSRKK 290 (1388)
Q Consensus 286 l~~k~ 290 (1388)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 78877
No 288
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.99 E-value=0.018 Score=58.24 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=28.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD 251 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (1388)
..++.+.|+.|+|||.+|+.+.+...+ +.....+-+.++.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcc
Confidence 467889999999999999999975221 33334444555443
No 289
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.99 E-value=0.034 Score=61.66 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.....++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999987
No 290
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.99 E-value=0.27 Score=54.64 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=38.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 183 VHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 183 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
++=..+....++..+... +.|.|.|+.|+||||+|+.++.. .... .+.|......+..++
T Consensus 47 y~f~~~~~~~vl~~l~~~----------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~Dl 106 (327)
T TIGR01650 47 YLFDKATTKAICAGFAYD----------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRIDL 106 (327)
T ss_pred ccCCHHHHHHHHHHHhcC----------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChhhc
Confidence 333444556677776432 35889999999999999999975 2222 234555555554443
No 291
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.99 E-value=0.11 Score=60.81 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=48.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH--HHHHHHHHHHhcCCCC---CCCcHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA--IKVTKAILRSICMHTD---ADDDLNSLQVKL 282 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~~~~l 282 (1388)
....+|.++|.+|+||||.|..++.... +..+ .++.|+. +.+.+ .+.++.+..+++.... ...+........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~-~~g~-kV~lV~~-D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~a 169 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFK-KKGL-KVGLVAA-DTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEG 169 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEecC-CCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 3468999999999999999999987532 2222 2333333 33333 4445566666554321 112322322222
Q ss_pred HhhcCCceEEEEEeCC
Q 045318 283 KDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 283 ~~~l~~k~~LlVlDdv 298 (1388)
.+..++. -+||+|..
T Consensus 170 l~~~~~~-DvVIIDTA 184 (437)
T PRK00771 170 LEKFKKA-DVIIVDTA 184 (437)
T ss_pred HHHhhcC-CEEEEECC
Confidence 2333333 56888877
No 292
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.98 E-value=0.03 Score=58.68 Aligned_cols=112 Identities=18% Similarity=0.214 Sum_probs=58.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
.+|.|+|+.|.||||+++.+... ........++. +.++... ..... ..+-.......+.....+.++..++...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~--~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~p 75 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEF--VHESK-RSLINQREVGLDTLSFENALKAALRQDP 75 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccc--cccCc-cceeeecccCCCccCHHHHHHHHhcCCc
Confidence 37899999999999999987765 22223334433 2222111 00000 0000000001112234455666676666
Q ss_pred EEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHh
Q 045318 291 FLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVAS 333 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 333 (1388)
=.|++|++.+. +.+...... ...|-.++.|+...++..
T Consensus 76 d~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 76 DVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHHH
Confidence 79999999433 333332222 134666888887665544
No 293
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.4 Score=58.82 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=100.6
Q ss_pred CccccchhhH---HHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDK---KAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~---~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
.++.|-|+.+ +++++.|..++.-. ....-++=|.++|++|+|||-||++++-... +-|+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 4577877554 55566665542100 0013346678999999999999999998643 234555543
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC---------------hhhhhhhcccccCCC--CC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN---------------YGDWTSLRLPFVAGA--SG 319 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~---------------~~~~~~l~~~~~~~~--~g 319 (1388)
+.++.+.+.. . ....+.+...-....+.|.+|+++... ...+.++...+.... .+
T Consensus 379 ---EFvE~~~g~~--a---srvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVGVG--A---SRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcccc--h---HHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 2222222211 1 111122222223567788888774311 112233333332222 23
Q ss_pred cEEEEEcCChhHHhh--cCC---CceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 045318 320 SKIIVTTRNQSVASM--MGS---VSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLA 388 (1388)
Q Consensus 320 s~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 388 (1388)
--++-+|+..++... +.. ++.+.++.-+.....++|..++-.- ....+..++++ |+...-|.+=|
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~---~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKK---KLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhcc---CCCcchhhHHH-HHhcCCCCcHH
Confidence 344556666655542 222 3567888888888889999887322 22234456666 88888887744
No 294
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.95 E-value=0.021 Score=54.60 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
.--|+|.||+|+||||+++.+.+..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999763
No 295
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.88 E-value=0.18 Score=59.34 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH--HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA--IKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
.++++++|++|+||||++..++........-..+..|+.. ++.. .+-++...+.++.......+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D-~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLD-TYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECC-ccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C
Confidence 4699999999999999998887643211222345555543 2221 2223333333433322233344555555442 3
Q ss_pred CceEEEEEeCC
Q 045318 288 RKKFLLVLDDM 298 (1388)
Q Consensus 288 ~k~~LlVlDdv 298 (1388)
..=+||+|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888965
No 296
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.87 E-value=0.14 Score=52.09 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.+..-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 68999999999999999999874
No 297
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.87 E-value=0.1 Score=56.64 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=53.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----------------
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD----------------- 270 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~----------------- 270 (1388)
+.-.++.|+|.+|+|||++|.++.... .+ +=..++|++..+. ..++.+.+ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-LK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-Hh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 445799999999999999999986542 12 2246788888655 34454443 22321100
Q ss_pred ---CCCcHHHHHHHHHhhcCC-ceEEEEEeCCC
Q 045318 271 ---ADDDLNSLQVKLKDGLSR-KKFLLVLDDMW 299 (1388)
Q Consensus 271 ---~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 299 (1388)
...+.+++...+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 112335555666666643 55589999873
No 298
>PRK05439 pantothenate kinase; Provisional
Probab=94.85 E-value=0.12 Score=57.20 Aligned_cols=79 Identities=22% Similarity=0.143 Sum_probs=44.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccc--CCceEEEEeCCccCHHHHHHHHHHHhc--CCCCCCCcHHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESH--FDLKAWTCVSDDFDAIKVTKAILRSIC--MHTDADDDLNSLQVKLK 283 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~~~~~~~~~i~~~l~--~~~~~~~~~~~~~~~l~ 283 (1388)
+...+|+|.|.+|+||||+|+.+..- .... -..+.-++...-+.....+.. ..+. ....+.-+.+.+...+.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~--l~~~~~~~~v~vi~~DdFy~~~~~l~~--~~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL--LSRWPEHPKVELVTTDGFLYPNAVLEE--RGLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH--HHhhCCCCceEEEeccccccCHHHHhh--hhccccCCCcccccHHHHHHHHH
Confidence 56789999999999999999988763 2211 122333443333322222221 1111 11234456677777776
Q ss_pred hhcCCce
Q 045318 284 DGLSRKK 290 (1388)
Q Consensus 284 ~~l~~k~ 290 (1388)
....|+.
T Consensus 160 ~Lk~G~~ 166 (311)
T PRK05439 160 DVKSGKP 166 (311)
T ss_pred HHHcCCC
Confidence 6666654
No 299
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.85 E-value=0.033 Score=55.43 Aligned_cols=82 Identities=21% Similarity=0.239 Sum_probs=54.1
Q ss_pred CCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCC--CCCCCC
Q 045318 714 NLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCT--SLPSIG 791 (1388)
Q Consensus 714 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~--~l~~l~ 791 (1388)
+...++|+.|.+.. +..|..++.|..|.+.+|.++.+...+.. .+++|..|.|.+|.+.+ ++..+.
T Consensus 43 ~~d~iDLtdNdl~~-----------l~~lp~l~rL~tLll~nNrIt~I~p~L~~-~~p~l~~L~LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-----------LDNLPHLPRLHTLLLNNNRITRIDPDLDT-FLPNLKTLILTNNSIQELGDLDPLA 110 (233)
T ss_pred ccceecccccchhh-----------cccCCCccccceEEecCCcceeeccchhh-hccccceEEecCcchhhhhhcchhc
Confidence 44556666655432 34455666777777777777766655543 46778888888887643 455677
Q ss_pred CCCCcceeeccCCcCc
Q 045318 792 QLPALKHLSIIGMALV 807 (1388)
Q Consensus 792 ~l~~L~~L~L~~~~~~ 807 (1388)
.+|.|++|.+-+|+..
T Consensus 111 ~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVE 126 (233)
T ss_pred cCCccceeeecCCchh
Confidence 7888888888777543
No 300
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.12 Score=54.89 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=66.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcc-----cc------ccC---CceEEEEeCCcc------CHH---------------
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHM-----VE------SHF---DLKAWTCVSDDF------DAI--------------- 255 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~-----~~------~~F---~~~~wv~~s~~~------~~~--------------- 255 (1388)
.+++|+|+.|.|||||.+.+..-.. +. ..+ ..+.||.-...+ ++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 6899999999999999999987211 11 001 235555332111 111
Q ss_pred -------HHHHHHHHHhcCCCCC-----CCcHHHH-HHHHHhhcCCceEEEEEeCC----CCCChhhhhhhcccccCCCC
Q 045318 256 -------KVTKAILRSICMHTDA-----DDDLNSL-QVKLKDGLSRKKFLLVLDDM----WNDNYGDWTSLRLPFVAGAS 318 (1388)
Q Consensus 256 -------~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~~l~~k~~LlVlDdv----~~~~~~~~~~l~~~~~~~~~ 318 (1388)
+...+.+++++...-. .-+-.+. ...+.+.|..+.=|+|||.- +.......-++...+.. .
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--e 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--E 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--C
Confidence 3334444444433211 1112223 33466778888889999964 22322333334333433 3
Q ss_pred CcEEEEEcCChhHHh
Q 045318 319 GSKIIVTTRNQSVAS 333 (1388)
Q Consensus 319 gs~iivTtR~~~v~~ 333 (1388)
|.-|++.|.+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998865443
No 301
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.84 E-value=0.079 Score=59.65 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCChHHH-HHHHHhcCccccccCCceEEEEeCC-ccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhc
Q 045318 209 GLFVIPIVGMGGLGKTT-LAQLVYNDHMVESHFDLKAWTCVSD-DFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGL 286 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (1388)
+-+||++||+.|||||| ||+..+.-....++ ..++.++... ...+.+-++..++-++.+-....+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 35899999999999975 66555543212222 3455565432 23344555555666665554455556655555443
Q ss_pred CCceEEEEEeCC
Q 045318 287 SRKKFLLVLDDM 298 (1388)
Q Consensus 287 ~~k~~LlVlDdv 298 (1388)
++. =+|.+|=+
T Consensus 280 ~~~-d~ILVDTa 290 (407)
T COG1419 280 RDC-DVILVDTA 290 (407)
T ss_pred hcC-CEEEEeCC
Confidence 333 34555655
No 302
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.51 Score=55.25 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=86.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1388)
..=|.+||++|.|||-||++|+|. -+..| ++|-.+ +++. ..-+ .+...+...+++.=..-
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP----ELlN----kYVG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP----ELLN----KYVG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH----HHHH----HHhh-----hHHHHHHHHHHHhhcCC
Confidence 345789999999999999999997 33344 555443 2222 1111 11222333344444568
Q ss_pred eEEEEEeCCCCC-----Chhh------hhhhcccccC--CCCCcEEEEEcCChhHHhh--cCC---CceEeCCCCChhhH
Q 045318 290 KFLLVLDDMWND-----NYGD------WTSLRLPFVA--GASGSKIIVTTRNQSVASM--MGS---VSAYELKKLTDDDC 351 (1388)
Q Consensus 290 ~~LlVlDdv~~~-----~~~~------~~~l~~~~~~--~~~gs~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~ 351 (1388)
.++|.||.++.- +... ..++..-+.. ...|--||-.|..+++... ... +...-|..-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 999999998541 1111 2223333322 2356677777766655432 122 24667777788888
Q ss_pred HHHHHHcccCCC-CCCCCchHHHHHHHHHHHcCCCh
Q 045318 352 RLVFTQHSLGTK-DFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 352 ~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
.++++...-... ....+-++.++|+. .+|.|.-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 888887763211 12234456665543 4555643
No 303
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.062 Score=61.47 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++.++|++|+||||++..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 304
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.81 E-value=0.13 Score=58.13 Aligned_cols=59 Identities=14% Similarity=0.072 Sum_probs=42.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCceEEEEeCCccCHHHHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVE----SHFDLKAWTCVSDDFDAIKVTKAILRSICM 267 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (1388)
....++-|+|.+|+|||++|..++-..... ..-..++|++....|+++++ .+|++.++.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 345789999999999999998887532221 11236899999999988876 455666654
No 305
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.11 Score=61.02 Aligned_cols=87 Identities=21% Similarity=0.115 Sum_probs=45.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhc
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD--AIKVTKAILRSICMHTDADDDLNSLQVKLKDGL 286 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 286 (1388)
...+|+|+|++|+||||++..+......+.....+..++. +.+. ..+.++...+.++.......+...+...+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdt-DtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTT-DTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEec-ccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-
Confidence 4579999999999999999888764211211223444443 2222 22223333333332222223334444444433
Q ss_pred CCceEEEEEeCC
Q 045318 287 SRKKFLLVLDDM 298 (1388)
Q Consensus 287 ~~k~~LlVlDdv 298 (1388)
.+ .-+|++|..
T Consensus 427 ~~-~DLVLIDTa 437 (559)
T PRK12727 427 RD-YKLVLIDTA 437 (559)
T ss_pred cc-CCEEEecCC
Confidence 33 457888877
No 306
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.80 E-value=0.13 Score=54.72 Aligned_cols=126 Identities=13% Similarity=0.119 Sum_probs=71.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC-----ccCHHHHHHHHHHHhcCCCC------CCCcHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD-----DFDAIKVTKAILRSICMHTD------ADDDLNS 277 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~ 277 (1388)
+..+++|||..|.||||+|+.+..=. .--.+.++..-.+ .....+-..++++.++.... ..-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34689999999999999999999742 2122233322111 12233445566666654321 1111122
Q ss_pred H-HHHHHhhcCCceEEEEEeCCCCC-ChhhhhhhcccccC--CCCCcEEEEEcCChhHHhhcCC
Q 045318 278 L-QVKLKDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVA--GASGSKIIVTTRNQSVASMMGS 337 (1388)
Q Consensus 278 ~-~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~~~~~ 337 (1388)
. .-.+.+.|.-+.-++|.|..-+. +...-.++...+.+ ...|-..+..|.+-.|++.+..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 2 23466777888889999986332 11112223322222 2356778888888888876544
No 307
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.80 E-value=0.14 Score=58.24 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=41.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccccc----CCceEEEEeCCccCHHHHHHHHHHHhc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESH----FDLKAWTCVSDDFDAIKVTKAILRSIC 266 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (1388)
....++-|+|++|+|||++|.+++........ =..++||+....|++.++.+ +++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 34579999999999999999999865322111 14789999999888877654 444443
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.78 E-value=0.1 Score=53.00 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=29.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD 253 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (1388)
++.|+|.+|+||||+++.+.... ...-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcchH
Confidence 36899999999999999998753 22334567776655543
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.78 E-value=0.11 Score=52.58 Aligned_cols=116 Identities=17% Similarity=0.081 Sum_probs=59.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC--ccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD--DFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSR 288 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1388)
.+++|+|..|.|||||.+.++... ......+++.-.. ..+..+.. .+.++.... -..-+...-.+.+.+-.
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~q-LS~G~~qrl~laral~~ 99 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDAR---RAGIAMVYQ-LSVGERQMVEIARALAR 99 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHH---hcCeEEEEe-cCHHHHHHHHHHHHHhc
Confidence 689999999999999999998752 2233444432111 11111111 111111100 11111222234455556
Q ss_pred ceEEEEEeCCCCC-ChhhhhhhcccccCC-CCCcEEEEEcCChhHHh
Q 045318 289 KKFLLVLDDMWND-NYGDWTSLRLPFVAG-ASGSKIIVTTRNQSVAS 333 (1388)
Q Consensus 289 k~~LlVlDdv~~~-~~~~~~~l~~~~~~~-~~gs~iivTtR~~~v~~ 333 (1388)
+.-++++|+.-.. +....+.+...+... ..|..||++|.+.....
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6778899987332 223333343333221 24667888888866443
No 310
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=94.74 E-value=0.17 Score=50.09 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=37.6
Q ss_pred HHHHHHHhhcCCceEEEEEeCCCC--CChhhhhhhcccccCCCCCcEEEEEcCChhHHhhcC
Q 045318 277 SLQVKLKDGLSRKKFLLVLDDMWN--DNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMMG 336 (1388)
Q Consensus 277 ~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~ 336 (1388)
+-...+.+.+-++.-+++-|.=-. +....|+-+...-.-+..|+.|+++|.+.++...+.
T Consensus 143 QQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 143 QQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 333456666778888999985411 112345444322222457999999999998877654
No 311
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.73 E-value=0.34 Score=52.96 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=66.1
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 045318 189 DKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMH 268 (1388)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (1388)
..+.++..+... .+..-++|+|+.|.||||+.+.+..... .....+++.- .+....+-..++......-
T Consensus 97 ~~~~~l~~l~~~-------~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~ 165 (270)
T TIGR02858 97 AADKLLPYLVRN-------NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRG-KKVGIVDERSEIAGCVNGV 165 (270)
T ss_pred cHHHHHHHHHhC-------CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECC-EEeecchhHHHHHHHhccc
Confidence 344555555532 3456789999999999999999997522 2222333210 1111001112333222111
Q ss_pred C--------CCCCcHHHHHHHHHhhc-CCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhh
Q 045318 269 T--------DADDDLNSLQVKLKDGL-SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASM 334 (1388)
Q Consensus 269 ~--------~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~ 334 (1388)
. +-.+...... -+...+ ...+-++++|.+- ....+..+...+ ..|..||+||.+..+...
T Consensus 166 ~q~~~~~r~~v~~~~~k~~-~~~~~i~~~~P~villDE~~--~~e~~~~l~~~~---~~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 166 PQHDVGIRTDVLDGCPKAE-GMMMLIRSMSPDVIVVDEIG--REEDVEALLEAL---HAGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccccccchHHH-HHHHHHHhCCCCEEEEeCCC--cHHHHHHHHHHH---hCCCEEEEEechhHHHHH
Confidence 1 0001111111 122222 2467789999983 334455554444 257789999998766543
No 312
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.69 E-value=0.014 Score=60.73 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=16.6
Q ss_pred ccCceeeEEEeCCc--ccc-ccccccccCcccceeeccCcccc
Q 045318 562 LKLQCLRVLCLREY--NIC-KISNTIGDLKHLRHLDLSETLIE 601 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~--~i~-~lp~~i~~l~~Lr~L~L~~~~i~ 601 (1388)
..+++|+.|+++.| .+. .++-...++++|++|+|++|+|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444455555544 222 22222223344555555554443
No 313
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.68 E-value=0.12 Score=56.88 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987754
No 314
>PRK07667 uridine kinase; Provisional
Probab=94.66 E-value=0.041 Score=57.40 Aligned_cols=38 Identities=18% Similarity=0.404 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 190 KKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+.|.+.+.... ++..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~------~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK------ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC------CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 455666664432 44589999999999999999999875
No 315
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.55 Score=48.21 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=84.0
Q ss_pred cccc-chhhHHHHHHHHhcCCCC-----CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 182 EVHG-RDDDKKAIVELLLNDDLN-----ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 182 ~~vG-r~~~~~~l~~~l~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
+++| -|..+++|.+.+.-+... ...-.+.+-|.++|++|.|||-||++|+++ ..+-|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----
Confidence 4555 467777766654322110 011245677889999999999999999985 23455677654
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh----------h----hhhhhcccccC--CCCC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY----------G----DWTSLRLPFVA--GASG 319 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------~----~~~~l~~~~~~--~~~g 319 (1388)
++.+..+.+- ..-+.++.-.-+ ..-.-.|.+|.+++... + ..-++...+.. ..+.
T Consensus 216 elvqk~igeg------srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 216 ELVQKYIGEG------SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred HHHHHHhhhh------HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 2222211110 000111111112 23566788888754210 0 11112222222 1356
Q ss_pred cEEEEEcCChhHHhh--c---CCCceEeCCCCChhhHHHHHHHcc
Q 045318 320 SKIIVTTRNQSVASM--M---GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 320 s~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
-+||..|..-++... . ..++.++..+-+++.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 688887765444432 1 223567888888877777777654
No 316
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.59 E-value=0.1 Score=55.57 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|..|+||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 317
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.56 E-value=0.096 Score=54.94 Aligned_cols=82 Identities=21% Similarity=0.343 Sum_probs=50.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc-CHHHHHHHHHHHhcCC-------CCCCCcHH------
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF-DAIKVTKAILRSICMH-------TDADDDLN------ 276 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~------ 276 (1388)
..++|.|..|+|||+|+..+.+.. .-+..+++.+.+.. .+.++.+++...-..+ ..+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 568999999999999999999863 22344777777653 4555555553331111 11111111
Q ss_pred ---HHHHHHHhhcCCceEEEEEeCC
Q 045318 277 ---SLQVKLKDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 277 ---~~~~~l~~~l~~k~~LlVlDdv 298 (1388)
...+.++. ++|.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 12233333 699999999999
No 318
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.56 E-value=0.12 Score=59.55 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=51.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccc-cCCceEEEEeCCccCHH--HHHHHHHHHhcCCCCCCCcHHHHHHHHHhh
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVES-HFDLKAWTCVSDDFDAI--KVTKAILRSICMHTDADDDLNSLQVKLKDG 285 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 285 (1388)
..++|.++|+.|+||||.+..++....... +-...+.+--.+.+... +-++..++.++..-......+++...+.+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 357999999999999999998886532211 11223333333344432 334455555554333334445555555443
Q ss_pred cCCceEEEEEeCCCC
Q 045318 286 LSRKKFLLVLDDMWN 300 (1388)
Q Consensus 286 l~~k~~LlVlDdv~~ 300 (1388)
.+.-+|++|..-.
T Consensus 253 --~~~DlVLIDTaGr 265 (388)
T PRK12723 253 --KDFDLVLVDTIGK 265 (388)
T ss_pred --CCCCEEEEcCCCC
Confidence 3456888998843
No 319
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.53 E-value=0.044 Score=60.22 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC
Q 045318 191 KAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD 270 (1388)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 270 (1388)
..+++.+... + +-|.++|+.|+|||++++....... ...| ...-+..+..-+...+++.+-..+.....
T Consensus 23 ~~ll~~l~~~--------~-~pvLl~G~~GtGKT~li~~~l~~l~-~~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~ 91 (272)
T PF12775_consen 23 SYLLDLLLSN--------G-RPVLLVGPSGTGKTSLIQNFLSSLD-SDKY-LVITINFSAQTTSNQLQKIIESKLEKRRG 91 (272)
T ss_dssp HHHHHHHHHC--------T-EEEEEESSTTSSHHHHHHHHHHCST-TCCE-EEEEEES-TTHHHHHHHHCCCTTECECTT
T ss_pred HHHHHHHHHc--------C-CcEEEECCCCCchhHHHHhhhccCC-cccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCC
Confidence 5566666653 2 4568999999999999999886421 1112 13334455544444333221111111000
Q ss_pred CCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC
Q 045318 271 ADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN 302 (1388)
Q Consensus 271 ~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~ 302 (1388)
. ...--.+|+.++.+||+--..
T Consensus 92 ~----------~~gP~~~k~lv~fiDDlN~p~ 113 (272)
T PF12775_consen 92 R----------VYGPPGGKKLVLFIDDLNMPQ 113 (272)
T ss_dssp E----------EEEEESSSEEEEEEETTT-S-
T ss_pred C----------CCCCCCCcEEEEEecccCCCC
Confidence 0 000114789999999995443
No 320
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.52 E-value=0.061 Score=51.59 Aligned_cols=44 Identities=30% Similarity=0.373 Sum_probs=33.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMH 268 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (1388)
+|.|-|++|.||||+|+.+.++.-.+ | .+.-.++++|+++.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCC
Confidence 68999999999999999999863221 1 13446788998887754
No 321
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.49 E-value=0.17 Score=59.19 Aligned_cols=89 Identities=17% Similarity=0.158 Sum_probs=46.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH--HHHHHHHHHHhcCCCC---CCCcHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA--IKVTKAILRSICMHTD---ADDDLNSLQVKL 282 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~~~~l 282 (1388)
....++.++|.+|+||||.|..++.....+. ...+.+...+.+.+ .+-++...+..+.... ...+..++....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 3468999999999999999888876521112 22333333333333 2333344444443211 122333443333
Q ss_pred HhhcCCceE-EEEEeCC
Q 045318 283 KDGLSRKKF-LLVLDDM 298 (1388)
Q Consensus 283 ~~~l~~k~~-LlVlDdv 298 (1388)
.+....+.| +||+|-.
T Consensus 175 l~~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTA 191 (428)
T ss_pred HHHHHhcCCCEEEEeCC
Confidence 333333444 7777765
No 322
>PTZ00301 uridine kinase; Provisional
Probab=94.48 E-value=0.04 Score=57.76 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|.|.+|.||||+|+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 379999999999999999988764
No 323
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.47 E-value=0.18 Score=57.32 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCceEEEEeCCccCHHHHHHHHHHHhc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVES----HFDLKAWTCVSDDFDAIKVTKAILRSIC 266 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (1388)
....++-|+|.+|+||||++.+++....... .=..++||+....|+..++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 3458999999999999999999976532211 11378999999988887654 4455443
No 324
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.45 E-value=0.25 Score=51.70 Aligned_cols=65 Identities=17% Similarity=0.204 Sum_probs=38.7
Q ss_pred HHHHHHhhcCCceEEEEEeCCCCC-ChhhhhhhcccccC--CCCCcEEEEEcCChhHHhhcCCCceEeCC
Q 045318 278 LQVKLKDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVA--GASGSKIIVTTRNQSVASMMGSVSAYELK 344 (1388)
Q Consensus 278 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~~~~~~~~~~l~ 344 (1388)
-.-.+.+.+-..+-+|+.|+=-.. +...-+.+...+.. ...|..||+.|.+..+|..+. +++.++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d--r~i~l~ 216 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD--RVIELK 216 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC--EEEEEe
Confidence 344566777788889999964111 11122233333332 235888999999999998643 444443
No 325
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.40 E-value=0.034 Score=59.11 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+..+|+|.|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999975
No 326
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.40 E-value=0.15 Score=50.98 Aligned_cols=115 Identities=16% Similarity=0.038 Sum_probs=60.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC---ccCHHHHHHHHHHHhc-----CC----C-CCC---Cc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD---DFDAIKVTKAILRSIC-----MH----T-DAD---DD 274 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l~-----~~----~-~~~---~~ 274 (1388)
..|-|++..|.||||.|..+.-.. ....+ .+..+.+-+ .......+... .+. .. . +.. ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra-~~~g~-~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRA-LGHGK-KVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH-HHCCC-eEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHH
Confidence 578888889999999997777542 11112 222222211 22333333332 111 00 0 000 11
Q ss_pred HHHHHHHHHhhcCCce-EEEEEeCCCC---CChhhhhhhcccccCCCCCcEEEEEcCCh
Q 045318 275 LNSLQVKLKDGLSRKK-FLLVLDDMWN---DNYGDWTSLRLPFVAGASGSKIIVTTRNQ 329 (1388)
Q Consensus 275 ~~~~~~~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~l~~~~~~~~~gs~iivTtR~~ 329 (1388)
..+.....++.+...+ =|+|||.+-. -..-+.+.+...+.....+..||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2233444555555444 4999999821 11123345555555556778999999985
No 327
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.40 E-value=0.19 Score=62.01 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=38.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...++|....++++.+.+..-.. .-.-|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~------~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR------SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC------cCCCEEEECCCCccHHHHHHHHHHh
Confidence 45789999999998888764321 1235679999999999999999975
No 328
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.38 E-value=0.1 Score=54.66 Aligned_cols=185 Identities=14% Similarity=0.170 Sum_probs=103.6
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCc----cccccCCceEEEEeCCc-------
Q 045318 183 VHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDH----MVESHFDLKAWTCVSDD------- 251 (1388)
Q Consensus 183 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~s~~------- 251 (1388)
+.++++....+...... ++.+-..++|+.|.||-|.+..+.++. -.+-+-+.+.|.+-|..
T Consensus 15 l~~~~e~~~~Lksl~~~--------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST--------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cccHHHHHHHHHHhccc--------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEe
Confidence 55677777777666542 456778899999999988776655431 11112234444443332
Q ss_pred ---c-----------CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCC-ceE-EEEEeCCCCCChhhhhhhcccccC
Q 045318 252 ---F-----------DAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSR-KKF-LLVLDDMWNDNYGDWTSLRLPFVA 315 (1388)
Q Consensus 252 ---~-----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~-k~~-LlVlDdv~~~~~~~~~~l~~~~~~ 315 (1388)
+ ..+-+.++++++......- ..++ +.| ++|+-.+++-..+...++....-.
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~qi-------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcch-------------hhccccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 1 1133444555544322110 0112 233 667777765554555556555544
Q ss_pred CCCCcEEEEEcCCh-hHHhhc-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 045318 316 GASGSKIIVTTRNQ-SVASMM-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL-PLAAKTL 392 (1388)
Q Consensus 316 ~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 392 (1388)
-...+|+|+.-.+. .+.... ...-.+++..-+++|....+++.+-.. ....+ .+++.+|+++++|. --|+-++
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE-~l~lp---~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKE-GLQLP---KELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHh-cccCc---HHHHHHHHHHhcccHHHHHHHH
Confidence 44667777644331 111111 112358899999999999888776322 22222 57899999999995 4444444
No 329
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.27 Score=60.17 Aligned_cols=132 Identities=15% Similarity=0.107 Sum_probs=74.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
...+.+.++|++|.|||.||+++++. ....| +.+... + +..... ......+...+....+
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~--~~~~f-----i~v~~~-~-------l~sk~v-----Gesek~ir~~F~~A~~ 333 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE--SRSRF-----ISVKGS-E-------LLSKWV-----GESEKNIRELFEKARK 333 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh--CCCeE-----EEeeCH-H-------Hhcccc-----chHHHHHHHHHHHHHc
Confidence 44568999999999999999999984 33444 222222 1 111111 1111223333444445
Q ss_pred CceEEEEEeCCCCC------C-h----hhhhhhcccccC--CCCCcEEEEEcCChhHHhh-c----CCCceEeCCCCChh
Q 045318 288 RKKFLLVLDDMWND------N-Y----GDWTSLRLPFVA--GASGSKIIVTTRNQSVASM-M----GSVSAYELKKLTDD 349 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~------~-~----~~~~~l~~~~~~--~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~ 349 (1388)
...+.|.+|+++.- . . .....+...+.. ...+..||-||........ + .-+..+.+.+-+.+
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~ 413 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence 78899999999431 0 0 112223333321 2234445666655443321 1 22357889999999
Q ss_pred hHHHHHHHcc
Q 045318 350 DCRLVFTQHS 359 (1388)
Q Consensus 350 ~~~~lf~~~~ 359 (1388)
+..+.|..+.
T Consensus 414 ~r~~i~~~~~ 423 (494)
T COG0464 414 ERLEIFKIHL 423 (494)
T ss_pred HHHHHHHHHh
Confidence 9999999886
No 330
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.29 E-value=0.14 Score=53.28 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=37.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEE---------EEeCCccCHHHH--HHHHHHHhcCCCC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAW---------TCVSDDFDAIKV--TKAILRSICMHTD 270 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---------v~~s~~~~~~~~--~~~i~~~l~~~~~ 270 (1388)
++...|.++||+|.||||..+.++.+. ...+....- |....+.++++. .++..++.+...+
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl--~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL--HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH--hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 456788899999999999999998762 222221111 222334455544 4566777665544
No 331
>PRK10867 signal recognition particle protein; Provisional
Probab=94.28 E-value=0.14 Score=59.77 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=21.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|.++|.+|+||||.|..++..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34589999999999999988887764
No 332
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.28 E-value=0.1 Score=53.47 Aligned_cols=22 Identities=45% Similarity=0.539 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++.++|++|+||||+++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998875
No 333
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.27 E-value=0.031 Score=58.54 Aligned_cols=80 Identities=20% Similarity=0.111 Sum_probs=42.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCC---ceEEEEeCCccCHHHHHHHHHHHhc----CCCCCCCcHHHHHHHHHh
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFD---LKAWTCVSDDFDAIKVTKAILRSIC----MHTDADDDLNSLQVKLKD 284 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~s~~~~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~l~~ 284 (1388)
||+|.|.+|+||||+|+.+...... .... ....+... .+....-....-.... ......-+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLD-DFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGG-GGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeec-ccccccchhhHhhccccccCCCCccccCHHHHHHHHHH
Confidence 7999999999999999999875211 1111 12222222 2222211111111111 111234567777777777
Q ss_pred hcCCceEEE
Q 045318 285 GLSRKKFLL 293 (1388)
Q Consensus 285 ~l~~k~~Ll 293 (1388)
..+++.+-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 666665443
No 334
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.26 E-value=0.13 Score=58.64 Aligned_cols=46 Identities=17% Similarity=0.105 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~------~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP------LDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 488999899888887765321 1234779999999999999999864
No 335
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.25 E-value=0.21 Score=51.13 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=59.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CC--------CcHHH
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----AD--------DDLNS 277 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~--------~~~~~ 277 (1388)
.+++|+|..|.|||||++.++.... .....+++.-..-.+.. ..+...++.... .. -+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence 6899999999999999999987521 12233332110000000 011111110000 00 11111
Q ss_pred -HHHHHHhhcCCceEEEEEeCCCCC-ChhhhhhhcccccCC-CCCcEEEEEcCChhHHhh
Q 045318 278 -LQVKLKDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVAG-ASGSKIIVTTRNQSVASM 334 (1388)
Q Consensus 278 -~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~~-~~gs~iivTtR~~~v~~~ 334 (1388)
..-.+.+.+..+.=++++|+--.. +......+...+... ..|..||++|.+......
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 222355556677789999987332 222233333333221 236778888888765553
No 336
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.12 Score=61.11 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=45.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc--CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF--DAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
..-|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.-. ..+.+++.+ ...+.+-+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHh
Confidence 35688999999999999999999754 4444445555554322 122222221 122334455
Q ss_pred CceEEEEEeCCC
Q 045318 288 RKKFLLVLDDMW 299 (1388)
Q Consensus 288 ~k~~LlVlDdv~ 299 (1388)
...-+|||||++
T Consensus 493 ~~PSiIvLDdld 504 (952)
T KOG0735|consen 493 YAPSIIVLDDLD 504 (952)
T ss_pred hCCcEEEEcchh
Confidence 678899999995
No 337
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.0087 Score=62.09 Aligned_cols=80 Identities=26% Similarity=0.307 Sum_probs=65.8
Q ss_pred hccCceeeEEEeCCccccccccccccCcccceeeccCcccccccc--chhcccccceeecCCCcchhhcch-----hhcc
Q 045318 561 LLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPE--SVNTLYNLHTLLLESCSRLKKLCA-----DMGN 633 (1388)
Q Consensus 561 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~-----~i~~ 633 (1388)
..+++.|+||.|+-|.|+.+ ..+..+++|+.|.|+.|.|..+.+ -+.+|++|++|.|..|.....-+. .+..
T Consensus 37 c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 37889999999999999988 458899999999999999998854 457889999999998865544432 3567
Q ss_pred cCCCCeee
Q 045318 634 LIKLRHLN 641 (1388)
Q Consensus 634 L~~L~~L~ 641 (1388)
|++|+.||
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 88888886
No 338
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.21 E-value=0.18 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|..|.|||||.+.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999874
No 339
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.19 E-value=0.034 Score=46.47 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 340
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.16 E-value=0.16 Score=64.79 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=71.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|+...+.++.+.+..-. ..-.-|.|+|..|+|||++|+.+++.... .. ...+.+.+..-. ...+-..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~-~~~v~i~c~~~~-~~~~~~~ 446 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA------QSDSTVLILGETGTGKELIARAIHNLSGR-NN-RRMVKMNCAAMP-AGLLESD 446 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh------CCCCCEEEECCCCcCHHHHHHHHHHhcCC-CC-CCeEEEecccCC-hhHhhhh
Confidence 368999999988877765422 11245789999999999999999975321 11 122334333321 1112222
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC-----------CCCcEEEEEcCCh
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG-----------ASGSKIIVTTRNQ 329 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iivTtR~~ 329 (1388)
+.....+...... ......+ + ....-.|+||||..-.......+...+..+ ..+.|||.||...
T Consensus 447 lfg~~~~~~~g~~--~~~~g~l-e--~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 447 LFGHERGAFTGAS--AQRIGRF-E--LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred hcCcccccccccc--cchhhHH-H--hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 2111111000000 0001111 1 122346999999776655556665544322 1345898888653
No 341
>PTZ00035 Rad51 protein; Provisional
Probab=94.11 E-value=0.32 Score=55.31 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=41.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCceEEEEeCCccCHHHHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVE----SHFDLKAWTCVSDDFDAIKVTKAILRSICM 267 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~ 267 (1388)
..-.++.|+|..|+||||++..++-..... ..=..++|++....++..++ .++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 445899999999999999999887543211 12235679988888887764 444555543
No 342
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.11 E-value=0.25 Score=53.57 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=34.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..-.++.|.|.+|+|||++|.++.... . ..-..++||+... ++.++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 445899999999999999999876542 1 2235678887765 34455554
No 343
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.10 E-value=0.034 Score=53.79 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 045318 213 IPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~ 233 (1388)
|+|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 344
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.08 E-value=0.2 Score=54.54 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHH-hcC----CCCCCCcHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRS-ICM----HTDADDDLNSLQVKL 282 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~-l~~----~~~~~~~~~~~~~~l 282 (1388)
+.-+++=|+|+.|.||||+|.+++-. .+..-..++|++.-..+++..+.. +... +.. .........++.+.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 55689999999999999999998865 333344889999999999877643 3333 211 111122223344444
Q ss_pred HhhcCCceEEEEEeCC
Q 045318 283 KDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 283 ~~~l~~k~~LlVlDdv 298 (1388)
.+....+--|+|+|-|
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444444569999988
No 345
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.05 E-value=0.18 Score=56.87 Aligned_cols=89 Identities=12% Similarity=0.111 Sum_probs=52.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhh
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD--AIKVTKAILRSICMHTDADDDLNSLQVKLKDG 285 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 285 (1388)
.+.++++++|+.|+||||++..++.....++ ..+.+|+.. ++. ..+-++..++.++.......+..++...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaD-tyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTD-TFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCC-ccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 3468999999999999999999986532221 245555543 332 34445555555554322234555555545433
Q ss_pred c-CCceEEEEEeCCC
Q 045318 286 L-SRKKFLLVLDDMW 299 (1388)
Q Consensus 286 l-~~k~~LlVlDdv~ 299 (1388)
- .+..=+|++|-.-
T Consensus 281 ~~~~~~D~VLIDTAG 295 (407)
T PRK12726 281 TYVNCVDHILIDTVG 295 (407)
T ss_pred HhcCCCCEEEEECCC
Confidence 2 1344578888773
No 346
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.05 E-value=0.043 Score=58.16 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44589999999999999999999874
No 347
>PRK06547 hypothetical protein; Provisional
Probab=94.02 E-value=0.07 Score=54.12 Aligned_cols=26 Identities=42% Similarity=0.599 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999875
No 348
>PRK08233 hypothetical protein; Provisional
Probab=94.02 E-value=0.042 Score=57.03 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 379999999999999999999875
No 349
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.97 E-value=0.3 Score=60.69 Aligned_cols=86 Identities=26% Similarity=0.301 Sum_probs=49.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD--AIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
..||+++|+.|+||||.+..++...........+..++. +.+. ..+-++...+.++.......+.+++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 479999999999999999988875321211123444433 3333 3444555555555444333455555555543 34
Q ss_pred CceEEEEEeCC
Q 045318 288 RKKFLLVLDDM 298 (1388)
Q Consensus 288 ~k~~LlVlDdv 298 (1388)
++. +|++|=.
T Consensus 263 ~~D-~VLIDTA 272 (767)
T PRK14723 263 DKH-LVLIDTV 272 (767)
T ss_pred CCC-EEEEeCC
Confidence 443 6777765
No 350
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.93 E-value=2.5 Score=47.06 Aligned_cols=156 Identities=8% Similarity=0.019 Sum_probs=87.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc--------cccccCCceEEEEe-CCccCHHHHHHHHHHHhcCCCCCCCcHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDH--------MVESHFDLKAWTCV-SDDFDAIKVTKAILRSICMHTDADDDLNSLQV 280 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~~-s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 280 (1388)
..+..++|..|+||+++|+.+.+.. ....|=+...++.. ......+++. ++.+.+...
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~------------ 84 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS------------ 84 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC------------
Confidence 3566799999999999999887642 01111112222211 1112222211 222222110
Q ss_pred HHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEc-CChhHHhh-cCCCceEeCCCCChhhHHHHHHHc
Q 045318 281 KLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTT-RNQSVASM-MGSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 281 ~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
..-.+++=++|+||+..........+...+.....++.+|++| ....+... ......+++.++++++..+.+...
T Consensus 85 ---~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 85 ---SFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred ---CcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 0012467789999996666556667776666656677777655 44444432 233468999999999988776653
Q ss_pred ccCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 359 SLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
+ .+ ++.++.++...+|.=-|+..
T Consensus 162 --~-----~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 162 --N-----KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred --C-----CC---hhHHHHHHHHcCCHHHHHHH
Confidence 1 11 13456666677763344444
No 351
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.88 E-value=1.3 Score=47.68 Aligned_cols=101 Identities=21% Similarity=0.197 Sum_probs=66.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
+.+.|+|+.|+|||+-++.+++.. .....+..+..+....++..+......... ....+....+...+++..
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~~~ 166 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN------PNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRDTV 166 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC------ccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHccCc
Confidence 488999999999999999999851 223334566667777766666665544332 223344455556668888
Q ss_pred EEEEEeCCCCCChhhhhhhcccccCCCCC
Q 045318 291 FLLVLDDMWNDNYGDWTSLRLPFVAGASG 319 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~g 319 (1388)
-+|+.|....-....++.+.......+.|
T Consensus 167 ~~iivDEA~~L~~~ale~lr~i~d~~Gi~ 195 (297)
T COG2842 167 RLIIVDEADRLPYRALEELRRIHDKTGIG 195 (297)
T ss_pred ceeeeehhhccChHHHHHHHHHHHhhCce
Confidence 89999998665556666666544333333
No 352
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.88 E-value=0.046 Score=50.89 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHhcCccccccCC
Q 045318 213 IPIVGMGGLGKTTLAQLVYNDHMVESHFD 241 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 241 (1388)
|.|+|.+|+||||+|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 679999999999999999986 555663
No 353
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.36 Score=49.65 Aligned_cols=61 Identities=13% Similarity=0.100 Sum_probs=35.6
Q ss_pred HHHhhcCCceEEEEEeCCCCC-ChhhhhhhcccccC-CCCCcEEEEEcCChhHHhhcCCCceE
Q 045318 281 KLKDGLSRKKFLLVLDDMWND-NYGDWTSLRLPFVA-GASGSKIIVTTRNQSVASMMGSVSAY 341 (1388)
Q Consensus 281 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~~~~-~~~gs~iivTtR~~~v~~~~~~~~~~ 341 (1388)
.+.+.+-=++-+.|||..++- +.+..+.+...... ...|+.+++.|....++....++.+|
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344444445669999988652 22233322222211 23577788888888898887666543
No 354
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.81 E-value=0.039 Score=57.65 Aligned_cols=104 Identities=20% Similarity=0.232 Sum_probs=60.2
Q ss_pred CceeeEEEeCCccccccccccccCcccceeeccCc--ccc-ccccchhcccccceeecCCCcchhhcch---hhcccCCC
Q 045318 564 LQCLRVLCLREYNICKISNTIGDLKHLRHLDLSET--LIE-TLPESVNTLYNLHTLLLESCSRLKKLCA---DMGNLIKL 637 (1388)
Q Consensus 564 l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~---~i~~L~~L 637 (1388)
+..|..|++.+..++.+ ..+-.|++|++|.++.| .+. .++-...++++|++|++++|.. +. ++ .+.++.+|
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~~-lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-KD-LSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-cc-ccccchhhhhcch
Confidence 34445555555555443 23456778888888887 443 4444455568888888887742 22 22 24566677
Q ss_pred CeeecCCCCCcccCcC----CCCCCCCCCCCCceEecc
Q 045318 638 RHLNNYNVPLLEGMPL----RIGHLSCLQTLPYFVVGK 671 (1388)
Q Consensus 638 ~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~~ 671 (1388)
..|++++|.... +-. .+.-+++|..|..+.+..
T Consensus 119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 777777776332 211 244467777776666653
No 355
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.80 E-value=0.25 Score=54.37 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=45.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH--HHHHHHHHHhcCCC---CCCCcHHH-HHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI--KVTKAILRSICMHT---DADDDLNS-LQVK 281 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~--~~~~~i~~~l~~~~---~~~~~~~~-~~~~ 281 (1388)
.+.++|.++|++|+||||.+..++... ...-..+++++ .+.+... +-++...+..+... ....+... ....
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~-~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAA-GDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEe-CCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 446899999999999999998888653 22212344444 3334332 22333344443221 11122222 2233
Q ss_pred HHhhcCCceEEEEEeCC
Q 045318 282 LKDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 282 l~~~l~~k~~LlVlDdv 298 (1388)
+........-++++|-.
T Consensus 147 l~~~~~~~~D~ViIDT~ 163 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTA 163 (272)
T ss_pred HHHHHHCCCCEEEEeCC
Confidence 33333344457888866
No 356
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.79 E-value=0.29 Score=61.30 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=80.4
Q ss_pred ccccchhhHHHHHHHHh---cCCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 182 EVHGRDDDKKAIVELLL---NDDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~---~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
.+.|.+..++++.+.+. .... ......-.+-|.++|++|+||||+|+.+.... ...| +.++.. ++
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f-----~~is~~----~~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF-----FTISGS----DF 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE-----EEEehH----Hh
Confidence 46677766665554432 2110 00000112348899999999999999998752 2223 222211 11
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhhhhhhccc----ccC--CCCCcE
Q 045318 258 TKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN----------YGDWTSLRLP----FVA--GASGSK 321 (1388)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~l~~~----~~~--~~~gs~ 321 (1388)
.. ...+ .....+...+...-...+++|++|+++... ...+...... +.. ...+.-
T Consensus 222 ~~----~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VE----MFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HH----hhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 11 1100 111222233333334567899999995421 0112221111 111 124555
Q ss_pred EEEEcCChhHHhh--c---CCCceEeCCCCChhhHHHHHHHcc
Q 045318 322 IIVTTRNQSVASM--M---GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 322 iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
||.||...+.... . .-+..+.+...+.++-.+++..+.
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 6668877654332 1 123567888888888888887765
No 357
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.77 E-value=0.19 Score=57.17 Aligned_cols=45 Identities=18% Similarity=0.096 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 183 VHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 183 ~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++|+...+.++.+.+..-.. .-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~------~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP------LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC------CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777776654321 1234689999999999999999874
No 358
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.73 E-value=0.061 Score=57.28 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 045318 213 IPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~ 233 (1388)
|.|.|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999875
No 359
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=0.26 Score=57.20 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=44.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC-ccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD-DFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
...+|+++|+.|+||||++..+..........+.+.+++... .....+-+....+.++.......+..++...+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 347999999999999999998875321111223334443322 122233344444444433333333333333332 234
Q ss_pred CceEEEEEeCC
Q 045318 288 RKKFLLVLDDM 298 (1388)
Q Consensus 288 ~k~~LlVlDdv 298 (1388)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 34556654
No 360
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.70 E-value=0.27 Score=56.61 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=48.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKLK 283 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (1388)
.-.++.|.|.+|+|||||+.+++... ...-..++|++..+. ..++. .-++.++.... ...+.+++...+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~--a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL--AKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 34799999999999999999998652 222245677765433 33332 22344443221 1233444444443
Q ss_pred hhcCCceEEEEEeCC
Q 045318 284 DGLSRKKFLLVLDDM 298 (1388)
Q Consensus 284 ~~l~~k~~LlVlDdv 298 (1388)
+ .+.-+||+|.+
T Consensus 156 ~---~~~~lVVIDSI 167 (372)
T cd01121 156 E---LKPDLVIIDSI 167 (372)
T ss_pred h---cCCcEEEEcch
Confidence 2 35557888887
No 361
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.70 E-value=0.4 Score=53.43 Aligned_cols=53 Identities=17% Similarity=0.152 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHh
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSI 265 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (1388)
-.++.|.|.+|+||||++.+++.... ..+=..++|++...+ ..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 35888999999999999999877532 221245778876553 455655555443
No 362
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.67 E-value=0.074 Score=55.73 Aligned_cols=118 Identities=13% Similarity=0.180 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCC-------cHHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADD-------DLNSLQVKL 282 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-------~~~~~~~~l 282 (1388)
.+++.|.|+.|.||||+.+.+.-.. +-.+. ..+|.... .. -.+...|...++....... +..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 3789999999999999999887532 11111 11111110 01 1222333333332221111 112221111
Q ss_pred HhhcCCceEEEEEeCCCCC-Chhh----hhhhcccccCCCCCcEEEEEcCChhHHhhcC
Q 045318 283 KDGLSRKKFLLVLDDMWND-NYGD----WTSLRLPFVAGASGSKIIVTTRNQSVASMMG 336 (1388)
Q Consensus 283 ~~~l~~k~~LlVlDdv~~~-~~~~----~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~ 336 (1388)
+ +..++-|+++|..-.. +..+ ...+...+.. .|+.+|+||.+.+++..+.
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 1 2356789999997332 1222 1223333322 3789999999998887654
No 363
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.64 E-value=0.053 Score=68.69 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=84.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC---C----CCcHHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD---A----DDDLNSLQVKL 282 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---~----~~~~~~~~~~l 282 (1388)
..+++|.|+.|.||||+.+.+.-..-. .....+|.+..... ...+.++...++.... . ..++.++...+
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il 397 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALM---FQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAIL 397 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHH---HHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHHH
Confidence 478999999999999999998753100 00111121111100 0001111111111000 0 01122222222
Q ss_pred HhhcCCceEEEEEeCCCCC-Chhhhhhh----cccccCCCCCcEEEEEcCChhHHhhcCCCceEeCCCCCh-hhHHHHHH
Q 045318 283 KDGLSRKKFLLVLDDMWND-NYGDWTSL----RLPFVAGASGSKIIVTTRNQSVASMMGSVSAYELKKLTD-DDCRLVFT 356 (1388)
Q Consensus 283 ~~~l~~k~~LlVlDdv~~~-~~~~~~~l----~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~-~~~~~lf~ 356 (1388)
.. + +.+-|+++|..-.- ++.+-..+ ...+. ..|+.+|+||....+.........+.-..+.. ++... |.
T Consensus 398 ~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~ 472 (771)
T TIGR01069 398 SK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PT 472 (771)
T ss_pred Hh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eE
Confidence 22 2 47889999998442 22333333 22222 35789999999988755432221111111111 11111 11
Q ss_pred HcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHHHHHHHh
Q 045318 357 QHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFDWRNVLN 410 (1388)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~ 410 (1388)
.+.. .+. .. ...|-.|++++ |+|-.|.--|..+.+. ....+..+++
T Consensus 473 Ykl~-~G~-~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 473 YKLL-KGI-PG----ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred EEEC-CCC-CC----CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1111 111 11 24577787777 7888888777766543 2224444443
No 364
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.63 E-value=0.26 Score=48.88 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
||.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999875
No 365
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.60 E-value=0.1 Score=49.76 Aligned_cols=24 Identities=38% Similarity=0.357 Sum_probs=22.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
.+|.+.|.-|+||||+++.+....
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999863
No 366
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.59 E-value=0.054 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
||.++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999854
No 367
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.22 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|..|.|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 368
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.54 E-value=0.37 Score=56.95 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=44.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD--AIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
..|++++|+.|+||||.+..++.....+..-..+..|.. +.+. ..+-++...+..+.......+..+....+ ..++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~-Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTT-DSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeC-CccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-Hhcc
Confidence 479999999999999999999875322221123444443 3332 23333444444443322222222222222 2334
Q ss_pred CceEEEEEeCC
Q 045318 288 RKKFLLVLDDM 298 (1388)
Q Consensus 288 ~k~~LlVlDdv 298 (1388)
++ ..+++|-.
T Consensus 334 d~-d~VLIDTa 343 (484)
T PRK06995 334 NK-HIVLIDTI 343 (484)
T ss_pred CC-CeEEeCCC
Confidence 44 36667765
No 369
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.50 E-value=0.44 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
|..|+|++|+|||+||..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999998864
No 370
>PHA00729 NTP-binding motif containing protein
Probab=93.47 E-value=0.095 Score=54.80 Aligned_cols=25 Identities=44% Similarity=0.502 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+...|.|.|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999875
No 371
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.47 E-value=0.19 Score=57.32 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=36.6
Q ss_pred CccccchhhHHHHHHHHhcCC------CCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDD------LNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.++.++.+.-.+...- ......-..+-|.++|++|+|||++|+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458898888888876655320 00000012367889999999999999999986
No 372
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.45 E-value=0.096 Score=55.45 Aligned_cols=119 Identities=15% Similarity=0.155 Sum_probs=58.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCC-------CcHHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDAD-------DDLNSLQVKL 282 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-------~~~~~~~~~l 282 (1388)
.+++.|+|+.|.||||+.+.+...... .+-...+|.. ... ...+.++...+.....-. .++.++...+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~---~~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l 103 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD---SAT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKAL 103 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC---CcE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHH
Confidence 378899999999999999998743111 1111111111 000 001112222222211100 1112222111
Q ss_pred HhhcCCceEEEEEeCCCCCC-hhhh----hhhcccccCC-CCCcEEEEEcCChhHHhhc
Q 045318 283 KDGLSRKKFLLVLDDMWNDN-YGDW----TSLRLPFVAG-ASGSKIIVTTRNQSVASMM 335 (1388)
Q Consensus 283 ~~~l~~k~~LlVlDdv~~~~-~~~~----~~l~~~~~~~-~~gs~iivTtR~~~v~~~~ 335 (1388)
.+..++-|+++|..-.-. ..+. ..+...+... ..+..+|+||.+.+++...
T Consensus 104 --~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 104 --RLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred --HhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 224678899999985422 1121 1223333322 2345899999998887654
No 373
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.42 E-value=0.28 Score=51.64 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|..|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999875
No 374
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.34 E-value=0.32 Score=56.63 Aligned_cols=87 Identities=13% Similarity=0.110 Sum_probs=47.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCC-----CC-CCCcHH-----H
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMH-----TD-ADDDLN-----S 277 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~-----~~-~~~~~~-----~ 277 (1388)
.-..++|+|..|+|||||++.+..... ....++|..-.+..++.++....+...... .. +..... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 346899999999999999998886422 222334433223344554444433332111 11 111111 1
Q ss_pred HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 ~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 112233333 489999999999
No 375
>PRK06762 hypothetical protein; Provisional
Probab=93.30 E-value=0.068 Score=54.44 Aligned_cols=23 Identities=39% Similarity=0.478 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 376
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.30 E-value=0.53 Score=55.40 Aligned_cols=115 Identities=27% Similarity=0.277 Sum_probs=62.3
Q ss_pred EEEEEEcCCCChHHH-HHHHHhcCccccccCCceEEEEeCCccC--HHHHHHHHHHHhcCCCCC----------C-----
Q 045318 211 FVIPIVGMGGLGKTT-LAQLVYNDHMVESHFDLKAWTCVSDDFD--AIKVTKAILRSICMHTDA----------D----- 272 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~----------~----- 272 (1388)
.||.|+|..|.|||| ||+.+|.+ .|..--.|-+.++.. +..+.+.+.++++..-.+ .
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~ed-----GY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T 446 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYED-----GYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDT 446 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhc-----ccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCce
Confidence 699999999999987 66667765 232222344445443 345566666666432110 0
Q ss_pred -----CcHHHHHHHHHhhcCCceEEEEEeCCCCCCh--hhhhhhcccccCCCCCcEEEEEcCChh
Q 045318 273 -----DDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY--GDWTSLRLPFVAGASGSKIIVTTRNQS 330 (1388)
Q Consensus 273 -----~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~ 330 (1388)
.+---+.+.+.+..-+|--.||+|...+... +-.-.+..........-|+|||+-..+
T Consensus 447 ~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~ 511 (1042)
T KOG0924|consen 447 KIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD 511 (1042)
T ss_pred eEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc
Confidence 0111123333333334556899999976431 111112111222345779999997644
No 377
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=93.27 E-value=0.057 Score=54.71 Aligned_cols=25 Identities=48% Similarity=0.542 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
-.+|+|-||=|+||||||+.+.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999999863
No 378
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.27 E-value=2.2 Score=48.07 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=33.3
Q ss_pred eEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 340 AYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 340 ~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
++++++++++|+..++..++-.+. .......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~-l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGW-LRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCc-cccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999887763221 1111233456677777779998543
No 379
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.26 E-value=0.46 Score=52.93 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=35.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAI 261 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i 261 (1388)
-..++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ +.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 3578999999999999999999862 235678888876643 44555553
No 380
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.24 E-value=0.25 Score=60.32 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc-ccccCCceEEEEeCCccCHHHHH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM-VESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
...++|+...++++.+.+..-.. .-.-|.|+|..|+|||++|+.+++... ... ..+.|.+..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~------~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~---p~v~v~c~~~~~-~~~e 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA------SDLNVLILGETGVGKELVARAIHAASPRADK---PLVYLNCAALPE-SLAE 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC------CCCcEEEECCCCccHHHHHHHHHHhCCcCCC---CeEEEEcccCCh-HHHH
Confidence 35689999999988888765332 224578999999999999999998522 122 223444443321 2111
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCC-----------CCcEEEEEcC
Q 045318 259 KAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGA-----------SGSKIIVTTR 327 (1388)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iivTtR 327 (1388)
.+++....+....... + ....+ + ....-.|+||+|..-....+..+...+..+. ...|||.||.
T Consensus 256 ~~lfG~~~g~~~ga~~-~-~~g~~-~--~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 330 (509)
T PRK05022 256 SELFGHVKGAFTGAIS-N-RSGKF-E--LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATN 330 (509)
T ss_pred HHhcCccccccCCCcc-c-CCcch-h--hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecC
Confidence 1221111110000000 0 00001 1 1122347899997766555666655543321 2458888886
Q ss_pred Ch
Q 045318 328 NQ 329 (1388)
Q Consensus 328 ~~ 329 (1388)
..
T Consensus 331 ~~ 332 (509)
T PRK05022 331 RD 332 (509)
T ss_pred CC
Confidence 53
No 381
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.24 E-value=0.31 Score=56.42 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=50.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHHHHHhcCCC-------CCCCcHHH----
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAILRSICMHT-------DADDDLNS---- 277 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~~---- 277 (1388)
-..++|+|..|+|||||++.+.... ..+..+.+-+.+... +.++..+++..-+... .+.....+
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~ 237 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGC 237 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHH
Confidence 3678999999999999999998742 224556666666543 3445555433321111 11111111
Q ss_pred -HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 -LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 -~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ +++.+|+++||+
T Consensus 238 ~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 238 ETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcCh
Confidence 112233333 589999999999
No 382
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.22 E-value=0.14 Score=52.20 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999986
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=93.20 E-value=0.45 Score=53.73 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=46.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH--HHHHHHHHHHhcCCCC---CCCcHHHH-HHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA--IKVTKAILRSICMHTD---ADDDLNSL-QVK 281 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~-~~~ 281 (1388)
.+..+|.++|+.|+||||.+..++.... ...+ .++.+. .+.+.. .+-++..+..++.... ...+.... .+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 3468999999999999998888876422 1223 233332 333332 2334555566554321 11222222 222
Q ss_pred HHhhc-CCceEEEEEeCCCC
Q 045318 282 LKDGL-SRKKFLLVLDDMWN 300 (1388)
Q Consensus 282 l~~~l-~~k~~LlVlDdv~~ 300 (1388)
+...- .+.. +|++|-.-.
T Consensus 215 i~~~~~~~~D-vVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGID-VVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCC-EEEEECCCc
Confidence 22211 2333 888998743
No 384
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.17 E-value=0.05 Score=50.36 Aligned_cols=21 Identities=48% Similarity=0.602 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 045318 213 IPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~ 233 (1388)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998876
No 385
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.08 E-value=0.46 Score=55.45 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCcccc-----ccCCceEEEEeCCccCHHHHHHHHHHHhc-CCCC-----CCCc--H
Q 045318 210 LFVIPIVGMGGLGKTTLA-QLVYNDHMVE-----SHFDLKAWTCVSDDFDAIKVTKAILRSIC-MHTD-----ADDD--L 275 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~~-----~~~~--~ 275 (1388)
-..++|.|..|+|||||| ..+.+...+. ++-+.++++.+.+..+...-+.+.+++-+ .... ..++ .
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 357899999999999997 6667654221 24457788888877654333444444433 1110 1111 1
Q ss_pred HH-----HHHHHHhhc--CCceEEEEEeCC
Q 045318 276 NS-----LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 276 ~~-----~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
.+ ....+.+++ +++.+|+|+||+
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 11 111233333 589999999999
No 386
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.06 E-value=0.099 Score=61.36 Aligned_cols=89 Identities=17% Similarity=0.127 Sum_probs=47.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceE-EEEeCCccC-HHHHHHHHHHHhcCCCCCCCc-----HHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKA-WTCVSDDFD-AIKVTKAILRSICMHTDADDD-----LNSLQVK 281 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~~s~~~~-~~~~~~~i~~~l~~~~~~~~~-----~~~~~~~ 281 (1388)
+-..+.|+|++|+|||||++.|.+... ..+-++.+ .+-|.+... +.++.+.+-.++-....+... ...+...
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 345778999999999999999998521 12223333 344454433 223322221111111111111 1122223
Q ss_pred HHhhc--CCceEEEEEeCC
Q 045318 282 LKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 282 l~~~l--~~k~~LlVlDdv 298 (1388)
+.+++ .++.+||++|++
T Consensus 494 ~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHcCCCEEEEEeCc
Confidence 34444 589999999999
No 387
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.05 E-value=0.32 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++++|.|+.|.||||+.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998753
No 388
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.04 E-value=0.14 Score=54.15 Aligned_cols=65 Identities=20% Similarity=0.187 Sum_probs=37.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 189 DKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
+..++++.+.... ++..+|+|.|++|+||+||..++....+-+++=-.++=|.-|++++--.++-
T Consensus 14 ~~~~ll~~l~~~~------g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT------GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT------T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc------CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 4556666665432 4568999999999999999999887644333322333444466666544443
No 389
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.03 E-value=0.99 Score=47.85 Aligned_cols=23 Identities=39% Similarity=0.440 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|.|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999999753
No 390
>PRK03839 putative kinase; Provisional
Probab=93.02 E-value=0.069 Score=55.20 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999986
No 391
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.95 E-value=0.13 Score=56.97 Aligned_cols=53 Identities=21% Similarity=0.299 Sum_probs=43.7
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 179 NEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....|+|.++.++++++.+.....+. ...-+|+.++|+.|.||||||..+.+-
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~--~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGL--EERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhcc--CccceEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999987654332 255689999999999999999998874
No 392
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.94 E-value=0.081 Score=55.27 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+.++|.|+|++|+||||+|+.+...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999999864
No 393
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.92 E-value=0.17 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=18.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46889999999999999999985
No 394
>PRK00625 shikimate kinase; Provisional
Probab=92.90 E-value=0.072 Score=54.04 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|.++||+|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999875
No 395
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.87 E-value=0.43 Score=52.18 Aligned_cols=26 Identities=31% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+..+|.|.|.+|+|||||...+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56799999999999999999999875
No 396
>PRK04040 adenylate kinase; Provisional
Probab=92.85 E-value=0.081 Score=54.67 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 397
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.85 E-value=0.22 Score=50.01 Aligned_cols=116 Identities=19% Similarity=0.145 Sum_probs=59.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc--cCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD--FDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSR 288 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 288 (1388)
.+++|+|..|.|||||++.+..... .....+++.-..- ....+. ...+..... -..-+...-.+.+.+..
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~----~~~i~~~~q-lS~G~~~r~~l~~~l~~ 97 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLPLEEL----RRRIGYVPQ-LSGGQRQRVALARALLL 97 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCCHHHH----HhceEEEee-CCHHHHHHHHHHHHHhc
Confidence 6899999999999999999997532 2334444322111 111111 111111100 11111222234455555
Q ss_pred ceEEEEEeCCCCC-ChhhhhhhcccccCC-CCCcEEEEEcCChhHHhh
Q 045318 289 KKFLLVLDDMWND-NYGDWTSLRLPFVAG-ASGSKIIVTTRNQSVASM 334 (1388)
Q Consensus 289 k~~LlVlDdv~~~-~~~~~~~l~~~~~~~-~~gs~iivTtR~~~v~~~ 334 (1388)
..-++++|+.-.. +......+...+... ..+..|+++|.+......
T Consensus 98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 6778999988432 222333333332221 125678888887766554
No 398
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=2.7 Score=51.11 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=59.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLN----ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
.++-|-++-+.+|.+-+.-+-.. +..-.+..=|.++|++|.|||-+|++|+.. .. ..|++|..+
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATE--cs-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATE--CS-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhh--ce-----eeEEeecCH-----
Confidence 45778899899888866432110 000022346789999999999999999986 22 234566544
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWN 300 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 300 (1388)
+++..--++ +.+.+.+.+.+.=..+.|+|.+|.+++
T Consensus 740 ---ELLNMYVGq-----SE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYVGQ-----SEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHhcc-----hHHHHHHHHHHhhccCCeEEEeccccc
Confidence 122222111 112222333333346899999999975
No 399
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.82 E-value=0.29 Score=49.72 Aligned_cols=117 Identities=16% Similarity=0.022 Sum_probs=60.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC---ccCHHHHHHHH--HHHh--cCC----C-CCC---CcH
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD---DFDAIKVTKAI--LRSI--CMH----T-DAD---DDL 275 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i--~~~l--~~~----~-~~~---~~~ 275 (1388)
..|-|+|..|-||||.|..+.-.. ..+=-.+..|.+-. .......++.+ +... +.. . ... ...
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra--~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRA--VGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHH--HHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 578899999999999997776531 11111223333322 22333333321 0000 000 0 000 111
Q ss_pred HHHHHHHHhhcCC-ceEEEEEeCCCC---CChhhhhhhcccccCCCCCcEEEEEcCCh
Q 045318 276 NSLQVKLKDGLSR-KKFLLVLDDMWN---DNYGDWTSLRLPFVAGASGSKIIVTTRNQ 329 (1388)
Q Consensus 276 ~~~~~~l~~~l~~-k~~LlVlDdv~~---~~~~~~~~l~~~~~~~~~gs~iivTtR~~ 329 (1388)
.+.....++.+.+ +-=++|||.+-. ...-+.+++...+.....+..||+|-|+.
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 2233445555544 445999999822 11123455555555556778999999985
No 400
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=7 Score=41.84 Aligned_cols=98 Identities=21% Similarity=0.194 Sum_probs=57.6
Q ss_pred ccccchhhHHHHHHHHhcCCC-C---CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDL-N---ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~-~---~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~ 257 (1388)
.+-|-+..++.+.+.+.-+.. . .......+-|.++|++|.||+-||++|+.... ..| .+||..-
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--STF-----FSvSSSD----- 201 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--STF-----FSVSSSD----- 201 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--Cce-----EEeehHH-----
Confidence 466888888887776532210 0 00113467889999999999999999998632 333 4555431
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHhhc-CCceEEEEEeCCCC
Q 045318 258 TKAILRSICMHTDADDDLNSLQVKLKDGL-SRKKFLLVLDDMWN 300 (1388)
Q Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~ 300 (1388)
++...-+ +.+.+...+.+.- ..|.-+|.+|.|+.
T Consensus 202 ---LvSKWmG------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 202 ---LVSKWMG------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred ---HHHHHhc------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1111111 1223333333333 36888999999854
No 401
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.80 E-value=0.098 Score=51.34 Aligned_cols=23 Identities=48% Similarity=0.683 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.||.|.|.+|.||||||+++...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~ 25 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERR 25 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999986
No 402
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.77 E-value=0.84 Score=48.65 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|..|.|||||.+.+...
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 403
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.73 E-value=0.28 Score=57.59 Aligned_cols=89 Identities=15% Similarity=0.139 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHHHHHhcCCC-------CCCCcHH----
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAILRSICMHT-------DADDDLN---- 276 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~---- 276 (1388)
+-..++|.|..|+|||||+.++...... .+-+.++++-+.+... +.++..++...-.... .+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 3467899999999999999988876332 2557777877766543 4455555543321111 0111111
Q ss_pred -HHHHHHHhhc---CCceEEEEEeCC
Q 045318 277 -SLQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 277 -~~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
.....+.+++ +++.+|+++|++
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1222344554 389999999999
No 404
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.71 E-value=0.42 Score=55.61 Aligned_cols=86 Identities=14% Similarity=0.163 Sum_probs=50.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHHHHHhcCCC-------CCCCcHHH---
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAILRSICMHT-------DADDDLNS--- 277 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~~--- 277 (1388)
+-..++|+|..|+|||||++.++.... .+..+++-+.+... +.+...+.+.+-+... .+.....+
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346889999999999999999997532 23455566665543 3344444443322111 11111111
Q ss_pred --HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 --LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 --~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 112233333 589999999999
No 405
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.69 E-value=0.44 Score=51.52 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccc--cccCCceEEEEeCCccC-HHHHHHHHHHHhcCCC-------CCCCcHHH--
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMV--ESHFDLKAWTCVSDDFD-AIKVTKAILRSICMHT-------DADDDLNS-- 277 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~~-- 277 (1388)
-..++|.|..|+|||+|+..+.++..+ +.+-+.++++-+.+... ..++..++.+.-.... .+.....+
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 356799999999999999999876431 22346788888877654 4555555544311111 01111111
Q ss_pred ---HHHHHHhhc---CCceEEEEEeCC
Q 045318 278 ---LQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 278 ---~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
....+.+++ +++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 122334444 378999999999
No 406
>PRK04328 hypothetical protein; Provisional
Probab=92.62 E-value=0.39 Score=52.43 Aligned_cols=42 Identities=14% Similarity=0.158 Sum_probs=31.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF 252 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 252 (1388)
.-.++.|.|.+|+|||+||.++.... . ..-...+|++..+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~-~~ge~~lyis~ee~~ 63 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGVYVALEEHP 63 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-H-hcCCcEEEEEeeCCH
Confidence 45799999999999999999877642 2 223567888876643
No 407
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.58 E-value=0.26 Score=54.77 Aligned_cols=85 Identities=19% Similarity=0.115 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKL 282 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 282 (1388)
+.-+++-|+|+.|+||||||.++... ....-..++|+.....+++.. +++++...+ ..+..++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999998875 333445789999888777643 344443221 122334444444
Q ss_pred HhhcC-CceEEEEEeCCC
Q 045318 283 KDGLS-RKKFLLVLDDMW 299 (1388)
Q Consensus 283 ~~~l~-~k~~LlVlDdv~ 299 (1388)
.+.++ +..-++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 44443 445588999883
No 408
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.56 E-value=0.53 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+++|+|..|.|||||++.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999995
No 409
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=92.56 E-value=0.43 Score=55.79 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=52.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc-CHHHHHHHHHHHhcCCC-------CCCCcHH----
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF-DAIKVTKAILRSICMHT-------DADDDLN---- 276 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~-------~~~~~~~---- 276 (1388)
+-..++|.|..|+|||||+.++....... +=+.++++-+.+.. .+.+++.++...-.... .+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 34678999999999999999887642211 11456777776654 34555555554321111 1111111
Q ss_pred -HHHHHHHhhc---CCceEEEEEeCC
Q 045318 277 -SLQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 277 -~~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
.....+.+++ +++.+|+++|++
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 1222344554 689999999999
No 410
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=92.54 E-value=1.3 Score=45.88 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=40.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF 240 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F 240 (1388)
..+-|-+..++++++.+.-+-... ......+-|..+|++|.|||-+|++.+.. ....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaq--T~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQ--TNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHh--ccchH
Confidence 357789999999998875332111 11134566889999999999999998865 34444
No 411
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.53 E-value=0.077 Score=54.32 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 412
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.52 E-value=0.14 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=22.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++.|.|+.|+|||||+++++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999987
No 413
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.47 E-value=0.17 Score=49.90 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=28.8
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 188 DDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+.++++.+++.. +++.++|..|||||||+..+..+
T Consensus 24 ~g~~~l~~~l~~-----------k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-----------KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-----------SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-----------CEEEEECCCCCCHHHHHHHHHhh
Confidence 446677777732 68999999999999999999986
No 414
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=92.47 E-value=0.39 Score=59.90 Aligned_cols=84 Identities=19% Similarity=0.109 Sum_probs=55.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKL 282 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 282 (1388)
..-+++-|+|..|+||||||.+++.... ..=..++|+...+.++.. .+++++.... .....++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 4458999999999999999987665422 222567899888777743 5666665432 123334455555
Q ss_pred HhhcC-CceEEEEEeCC
Q 045318 283 KDGLS-RKKFLLVLDDM 298 (1388)
Q Consensus 283 ~~~l~-~k~~LlVlDdv 298 (1388)
...++ ++--|||+|-+
T Consensus 131 ~~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 131 DMLIRSGALDIVVIDSV 147 (790)
T ss_pred HHHhhcCCCeEEEEcch
Confidence 55454 45668999988
No 415
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=92.44 E-value=0.61 Score=48.20 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|..|.|||||.+.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999974
No 416
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.41 E-value=0.77 Score=48.02 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|.|+.|.|||||.+.+..-
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl 58 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGR 58 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999874
No 417
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.41 E-value=0.29 Score=55.99 Aligned_cols=53 Identities=26% Similarity=0.270 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcC----C-CCCC-CCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLND----D-LNAD-CDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~----~-~~~~-~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.++.++.+..++... . .... .......|.++|+.|+||||+|+.+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999998888777531 0 0000 0012367899999999999999999875
No 418
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.39 E-value=0.081 Score=55.73 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|..|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 419
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.29 E-value=0.93 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|..|.|||||++.+.-.
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999999864
No 420
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=92.29 E-value=0.71 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|..|.|||||++.++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999964
No 421
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=92.26 E-value=0.13 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+++|+|..|+|||||++.+...
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHH
Confidence 34579999999999999999999975
No 422
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.23 E-value=1.1 Score=45.68 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.-.||+|+|+.|.|||||.+-+..=
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3469999999999999999998763
No 423
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.22 E-value=0.18 Score=53.85 Aligned_cols=65 Identities=22% Similarity=0.211 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHH
Q 045318 191 KAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAI 261 (1388)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (1388)
.+++..+.... ++..||+|.|.||+||+||.-.+....+.+++=-.++=|.-|++++--.++-+=
T Consensus 38 ~~ll~~l~p~t------G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRT------GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcC------CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 45555554432 566899999999999999999888765445554445555567777665555443
No 424
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.20 E-value=0.12 Score=49.92 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+||.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 589999999999999999887764
No 425
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.18 E-value=0.31 Score=53.48 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=30.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD 250 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 250 (1388)
..-.++.|.|.+|+||||+|.+++.... + .=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA-S-RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH-h-CCCcEEEEEecC
Confidence 3457999999999999999999866421 1 224677887764
No 426
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=92.17 E-value=0.23 Score=46.30 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=33.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|-.-..+.+++.+..--.+ ....+.-|++..|+.|+|||-+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~-~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLAN-PNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcC-CCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4556555555555544321111 11267789999999999999988888765
No 427
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.13 E-value=0.81 Score=61.52 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+=|.++|++|+|||.||++++.+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHh
Confidence 456889999999999999999987
No 428
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.11 E-value=0.13 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999975
No 429
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.10 E-value=0.11 Score=53.68 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++.|+|+.|+||||+++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 430
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.08 E-value=0.76 Score=51.52 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=47.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC-ccCHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD-DFDAIKVTKAILRSICMH-------TDADDDLN----- 276 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (1388)
-..++|+|..|+|||||.+.+..... -+..+...+.. ..++.++.......-... ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999997532 12333344443 334455555444432211 11111111
Q ss_pred HHHHHHHhhc--CCceEEEEEeCC
Q 045318 277 SLQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 277 ~~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
...-.+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHcCCCeEEEeccc
Confidence 1112223333 589999999998
No 431
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.06 E-value=0.27 Score=56.41 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=48.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|+++.+..+...+... +-+.+.|.+|+|||+||++++.. ... ..++|.+.......++...
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~----------~~vll~G~PG~gKT~la~~lA~~--l~~---~~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG----------GHVLLEGPPGVGKTLLARALARA--LGL---PFVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC----------CCEEEECCCCccHHHHHHHHHHH--hCC---CeEEEecCCCCCHHHhcCc
Confidence 34889888888887777654 34789999999999999999985 332 3356677777777666544
Q ss_pred H
Q 045318 261 I 261 (1388)
Q Consensus 261 i 261 (1388)
.
T Consensus 89 ~ 89 (329)
T COG0714 89 Y 89 (329)
T ss_pred h
Confidence 3
No 432
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.05 E-value=0.75 Score=49.73 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=30.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD 251 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (1388)
..-.++.|.|.+|+||||+|.++.... .+ .-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC
Confidence 345799999999999999999876532 11 2346778876443
No 433
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.01 E-value=0.46 Score=55.28 Aligned_cols=85 Identities=16% Similarity=0.206 Sum_probs=47.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc-cCHHHHHHHHHHHhcCCC-------CCCCcHHH----
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD-FDAIKVTKAILRSICMHT-------DADDDLNS---- 277 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~~---- 277 (1388)
-..++|.|..|+|||||++.+..... . +..+.+.+.+. -.+.++..+.+..-+... .+.....+
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~ 215 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAA 215 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHH
Confidence 36789999999999999999987532 1 22222333332 234445444433322111 11111111
Q ss_pred -HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 -LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 -~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ +++.+|+++||+
T Consensus 216 ~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 216 YTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 112234444 589999999999
No 434
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.00 E-value=0.1 Score=66.39 Aligned_cols=176 Identities=17% Similarity=0.143 Sum_probs=85.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcc--------------ccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCc
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHM--------------VESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDD 274 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~--------------~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~ 274 (1388)
+.+++.|.|+.+.||||+.+.+.-..- .-..|+ .++..+....++..-+.... ..
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS----------~~ 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFS----------GH 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHH----------HH
Confidence 457889999999999999998864210 001111 12222222222111111110 01
Q ss_pred HHHHHHHHHhhcCCceEEEEEeCCCCC-Chhhhhhh----cccccCCCCCcEEEEEcCChhHHhhcCCCce---EeCCCC
Q 045318 275 LNSLQVKLKDGLSRKKFLLVLDDMWND-NYGDWTSL----RLPFVAGASGSKIIVTTRNQSVASMMGSVSA---YELKKL 346 (1388)
Q Consensus 275 ~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l----~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~---~~l~~L 346 (1388)
+.+....+.. + +.+-|+++|..-.- ++.+-..+ ...+. ..|+.+|+||...+++........ ..+..
T Consensus 395 m~~~~~Il~~-~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~- 469 (782)
T PRK00409 395 MTNIVRILEK-A-DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF- 469 (782)
T ss_pred HHHHHHHHHh-C-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-
Confidence 1122222222 2 47789999998542 22222233 22222 247899999999887765433211 11111
Q ss_pred ChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHHHHHHHh
Q 045318 347 TDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFDWRNVLN 410 (1388)
Q Consensus 347 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~ 410 (1388)
+ ++... |.... ..+. .. ...|-.|++++ |+|-.+.--|.-+-... ...++.+++
T Consensus 470 d-~~~l~-~~Ykl-~~G~-~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~-~~~~~~li~ 523 (782)
T PRK00409 470 D-EETLR-PTYRL-LIGI-PG----KSNAFEIAKRL-GLPENIIEEAKKLIGED-KEKLNELIA 523 (782)
T ss_pred e-cCcCc-EEEEE-eeCC-CC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhh-hhHHHHHHH
Confidence 1 11111 11111 1111 11 24577787777 78888888777665442 224444443
No 435
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.98 E-value=0.12 Score=50.30 Aligned_cols=39 Identities=23% Similarity=0.299 Sum_probs=26.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD 250 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 250 (1388)
++|.|+|..|+|||||++.+.+.. .+..+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999863 234444444554443
No 436
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=91.97 E-value=0.42 Score=50.82 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=45.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH-hhcc-cCcHHHHHHHHHHHHHHhhhhhHHhhh
Q 045318 31 QEQIQADLKKWERILFKIHAVLDDA-DEKQ-MTKQSVRLWLRELKNLAYDVEDILDEF 86 (1388)
Q Consensus 31 ~~~~~~~~~~l~~~l~~i~~~l~~a-~~~~-~~~~~~~~wl~~lr~~~yd~ed~ld~~ 86 (1388)
..-++.+++-++.+++.+|.||+.. ++.. .++. ...++.++-..||++|.++|.+
T Consensus 316 laflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYVVDaC 372 (402)
T PF12061_consen 316 LAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYVVDAC 372 (402)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeeeeehh
Confidence 3456899999999999999999986 4423 3344 8899999999999999999976
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.97 E-value=0.56 Score=50.41 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=31.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAI 261 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (1388)
..++.|.|..|+||||+|.++.... .+.. ..+++++.. .+..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCC--CCHHHHHHHH
Confidence 4699999999999999986665532 1222 345666533 3455666665
No 438
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.95 E-value=0.19 Score=51.77 Aligned_cols=42 Identities=29% Similarity=0.433 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (1388)
.|+|.|-||+||||+|..+.....-+.-|+ +.-|....+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCCh
Confidence 589999999999999988555322222243 344555555553
No 439
>PRK13948 shikimate kinase; Provisional
Probab=91.94 E-value=0.37 Score=49.33 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.....|.++||.|+||||+++.+.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34467889999999999999999875
No 440
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.87 E-value=0.11 Score=53.46 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|..|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 441
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.85 E-value=0.1 Score=54.19 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999874
No 442
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.84 E-value=0.57 Score=54.55 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc-CHHHHHHHHHHHhcCC-------CCCCCcHHH---
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF-DAIKVTKAILRSICMH-------TDADDDLNS--- 277 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 277 (1388)
.-..++|+|..|+|||||++.+.... +.+..+++.+.+.. .+.+.+.+....-... ..+.....+
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34688999999999999999998752 23445565555543 3435445443211000 011111111
Q ss_pred --HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 --LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 --~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 112233333 489999999999
No 443
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.84 E-value=0.22 Score=55.57 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=33.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++.+.|.|||||||+|.+..-. .......+.-|+.....+..+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~--lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVK--LAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHH--HHHcCCcEEEEEeCCCCchHhhhcc
Confidence 378999999999999999886543 2222244666666666666665543
No 444
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.81 E-value=0.58 Score=48.99 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=27.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccC--------CceEEEEeCCc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHF--------DLKAWTCVSDD 251 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~s~~ 251 (1388)
.++.|+|++|+||||++.++.........| ..++|+....+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478899999999999999988764322222 36677766555
No 445
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.80 E-value=1.2 Score=46.94 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=21.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|..|.|||||++.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhccc
Confidence 69999999999999999999875
No 446
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.77 E-value=0.55 Score=54.60 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.++|..|+||||.|..++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999988864
No 447
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=91.75 E-value=0.58 Score=49.21 Aligned_cols=21 Identities=29% Similarity=0.219 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHh
Q 045318 211 FVIPIVGMGGLGKTTLAQLVY 231 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~ 231 (1388)
++++|.|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999988
No 448
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.73 E-value=0.13 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..|.|+|++|+||||+|+.++..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 58899999999999999999975
No 449
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.73 E-value=0.13 Score=50.28 Aligned_cols=20 Identities=45% Similarity=0.758 Sum_probs=18.6
Q ss_pred EEEEEcCCCChHHHHHHHHh
Q 045318 212 VIPIVGMGGLGKTTLAQLVY 231 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~ 231 (1388)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 450
>PRK15453 phosphoribulokinase; Provisional
Probab=91.71 E-value=0.75 Score=49.80 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+..+|+|.|.+|+||||+|+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4558999999999999999999885
No 451
>PRK08149 ATP synthase SpaL; Validated
Probab=91.69 E-value=0.65 Score=54.01 Aligned_cols=86 Identities=14% Similarity=0.181 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc-cCHHHHHHHHHHHhcCCC-------CCCCcHH----
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD-FDAIKVTKAILRSICMHT-------DADDDLN---- 276 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~-------~~~~~~~---- 276 (1388)
+-..++|+|..|+|||||++.++.... -+..+...+... .++.++..+......... .+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 336789999999999999999997522 233333444333 345555555554332111 1111111
Q ss_pred -HHHHHHHhhc--CCceEEEEEeCC
Q 045318 277 -SLQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 277 -~~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
.....+.+++ ++|.+|+++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1122233333 589999999999
No 452
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.67 E-value=0.29 Score=57.03 Aligned_cols=89 Identities=11% Similarity=0.201 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHHHHHhcCCC-------CCCCcHH----
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAILRSICMHT-------DADDDLN---- 276 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~---- 276 (1388)
+-..++|.|.+|+|||+|+.++..... +.+-+.++++-+.+... +.++.+++...-.... .+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 335789999999999999999887632 23346788888876654 4455555443211110 1111111
Q ss_pred -HHHHHHHhhc---CCceEEEEEeCC
Q 045318 277 -SLQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 277 -~~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
.....+.+++ +++++|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1222344554 468999999999
No 453
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.67 E-value=0.13 Score=53.17 Aligned_cols=23 Identities=35% Similarity=0.661 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++|+|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57999999999999999999984
No 454
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.65 E-value=0.43 Score=48.15 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=44.0
Q ss_pred EEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC--CC-CcHHHHHHHHHhhcCCc
Q 045318 213 IPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD--AD-DDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~-~~~~~~~~~l~~~l~~k 289 (1388)
+.|.|..|.|||++|.++... ....++++.-.+.++. ++.+.|.+....... .. .....+...+.+. + +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 578999999999999998764 2235667766666654 344444332222111 11 1122333333221 2 2
Q ss_pred eEEEEEeCC
Q 045318 290 KFLLVLDDM 298 (1388)
Q Consensus 290 ~~LlVlDdv 298 (1388)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337999987
No 455
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.65 E-value=0.74 Score=49.82 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=47.6
Q ss_pred cEEEEEEcCCCChHHHHH-HHHhcCccccccCCce-EEEEeCCccC-HHHHHHHHHHHhcCC-------CCCCCcHH---
Q 045318 210 LFVIPIVGMGGLGKTTLA-QLVYNDHMVESHFDLK-AWTCVSDDFD-AIKVTKAILRSICMH-------TDADDDLN--- 276 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~--- 276 (1388)
-.-++|.|..|+|||+|| ..+.+.. +-+.+ +++-+.+... +.++.+++.+.-... ..+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 357899999999999996 6666531 22334 5666666543 455555554322111 01111111
Q ss_pred ------HHHHHHHhhcCCceEEEEEeCC
Q 045318 277 ------SLQVKLKDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 277 ------~~~~~l~~~l~~k~~LlVlDdv 298 (1388)
.+.+.++. +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 12233333 589999999999
No 456
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=91.63 E-value=1.3 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|+.|.|||||.+.+...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 457
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.59 E-value=0.73 Score=54.86 Aligned_cols=82 Identities=21% Similarity=0.259 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKLK 283 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (1388)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ..++... ++.++.... ...+.+++...+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 347999999999999999999987532 22235677776543 3333222 444443211 1233444443332
Q ss_pred hhcCCceEEEEEeCC
Q 045318 284 DGLSRKKFLLVLDDM 298 (1388)
Q Consensus 284 ~~l~~k~~LlVlDdv 298 (1388)
+ .+.-+||+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 24447777776
No 458
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.57 E-value=1.3 Score=47.75 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.+...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 459
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.57 E-value=0.57 Score=54.47 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=50.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHHHHHhcCCC-------CCCCcHHH---
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAILRSICMHT-------DADDDLNS--- 277 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~-------~~~~~~~~--- 277 (1388)
+-..++|.|..|+|||||.+.+++... -+.++++-+.+... +.++....+..-+... .+.....+
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346889999999999999999998632 25667777766643 3344433332211111 11111111
Q ss_pred --HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 --LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 --~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ ++|++|+++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 111233333 589999999999
No 460
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.55 E-value=0.12 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4679999999999999999875
No 461
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=91.53 E-value=0.4 Score=58.58 Aligned_cols=47 Identities=19% Similarity=0.105 Sum_probs=35.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|....+.++++.+..-.. . -.-|.|+|..|+||+++|++++..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~-----~-~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM-----L-DAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC-----C-CCCEEEECCCCccHHHHHHHHHHh
Confidence 3688998888888877653221 1 134779999999999999998764
No 462
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=91.50 E-value=0.41 Score=53.99 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.9
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 045318 213 IPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+.+.|++|+||||+++.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999865
No 463
>PRK06217 hypothetical protein; Validated
Probab=91.47 E-value=0.13 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCc
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
.|.|.|++|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999763
No 464
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=91.45 E-value=2 Score=47.20 Aligned_cols=131 Identities=9% Similarity=0.004 Sum_probs=70.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc------------ccCCceEEEEeCCccCHHH
Q 045318 189 DKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE------------SHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~------------~~F~~~~wv~~s~~~~~~~ 256 (1388)
..+++...+..+. -..-..++|+.|+||+++|..+....--. .|-| ..|+.-...
T Consensus 5 ~~~~L~~~i~~~r-------l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD-~~~i~p~~~----- 71 (290)
T PRK05917 5 AWEALIQRVRDQK-------VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPD-IHEFSPQGK----- 71 (290)
T ss_pred HHHHHHHHHHcCC-------cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCC-EEEEecCCC-----
Confidence 4456666665532 23466799999999999998887642110 0111 111110000
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhh-----cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC-hh
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDG-----LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN-QS 330 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~-~~ 330 (1388)
.....+++..+ +.+. ..+++-++|+|+++.-..+.+..+...+-....++.+|++|.+ ..
T Consensus 72 -------------~~~I~idqiR~-l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ 137 (290)
T PRK05917 72 -------------GRLHSIETPRA-IKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQR 137 (290)
T ss_pred -------------CCcCcHHHHHH-HHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhh
Confidence 00112333222 2222 2355668899999877777788877776655566666665555 44
Q ss_pred HHhh-cCCCceEeCCCC
Q 045318 331 VASM-MGSVSAYELKKL 346 (1388)
Q Consensus 331 v~~~-~~~~~~~~l~~L 346 (1388)
+... ......+.+.++
T Consensus 138 ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 138 LPPTIRSRSLSIHIPME 154 (290)
T ss_pred CcHHHHhcceEEEccch
Confidence 4332 222345666654
No 465
>PRK13949 shikimate kinase; Provisional
Probab=91.45 E-value=0.13 Score=52.08 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-|.|+|+.|+||||+|+.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999975
No 466
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.44 E-value=0.15 Score=52.91 Aligned_cols=23 Identities=43% Similarity=0.515 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
-.+++|+|..|.|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 36899999999999999999985
No 467
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.43 E-value=0.11 Score=29.56 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=4.1
Q ss_pred eeEEEeCCccccc
Q 045318 567 LRVLCLREYNICK 579 (1388)
Q Consensus 567 Lr~L~L~~~~i~~ 579 (1388)
|++|++++|.++.
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 3444444444333
No 468
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.42 E-value=1.9 Score=52.31 Aligned_cols=52 Identities=19% Similarity=0.138 Sum_probs=36.4
Q ss_pred ccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+++..+..+.+.+....... .......++.++|.+|+||||++++|+..
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~ 454 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASE 454 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHH
Confidence 34567777777777775543211 11124568899999999999999999985
No 469
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.40 E-value=0.12 Score=51.23 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
||.|.|+.|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999974
No 470
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.38 E-value=0.91 Score=51.19 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=23.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCc
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
+..+|+++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45899999999999999999998753
No 471
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.38 E-value=0.17 Score=52.35 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=28.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEe
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCV 248 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 248 (1388)
++|.|+|+.|+|||||++.+..+ ...+|...++.+-
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~--~~~~~~~~v~~TT 38 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQE--FPDKFGRVVSHTT 38 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHH--STTTEEEEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHh--cccccccceeecc
Confidence 68899999999999999999985 4556654444443
No 472
>PF13245 AAA_19: Part of AAA domain
Probab=91.37 E-value=0.29 Score=41.67 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=16.4
Q ss_pred EEEEEEcCCCChHHHHH-HHHhc
Q 045318 211 FVIPIVGMGGLGKTTLA-QLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa-~~v~~ 232 (1388)
+++.|.|++|.|||+++ +.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57788999999999544 44444
No 473
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.36 E-value=0.14 Score=52.54 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 474
>PRK05973 replicative DNA helicase; Provisional
Probab=91.34 E-value=0.74 Score=49.06 Aligned_cols=48 Identities=17% Similarity=0.041 Sum_probs=32.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.-.++.|.|.+|+|||++|.++....- +. =..+++++...+ ..++...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a-~~-Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM-KS-GRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH-hc-CCeEEEEEEeCC--HHHHHHH
Confidence 346889999999999999999876532 22 234666665554 3444444
No 475
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.34 E-value=0.18 Score=45.86 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=20.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHh
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVY 231 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~ 231 (1388)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999976
No 476
>PLN02348 phosphoribulokinase
Probab=91.29 E-value=0.21 Score=56.61 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+...+|+|.|.+|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999875
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.25 E-value=0.33 Score=55.85 Aligned_cols=112 Identities=18% Similarity=0.203 Sum_probs=61.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
..|.|.|+.|.||||+.+.+... +..+....++. +.++.... .... ..+........+.......++..++...
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~~--~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~~p 196 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEYV--HRNK-RSLINQREVGLDTLSFANALRAALREDP 196 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhhh--ccCc-cceEEccccCCCCcCHHHHHHHhhccCC
Confidence 57999999999999999998874 33334444443 33332111 0000 0000000111111234556777788888
Q ss_pred EEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHh
Q 045318 291 FLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVAS 333 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 333 (1388)
=.|++|.+.+ ...+..... ....|-.|+.|.....+..
T Consensus 197 d~i~vgEird--~~~~~~~l~---aa~tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 197 DVILIGEMRD--LETVELALT---AAETGHLVFGTLHTNSAAQ 234 (343)
T ss_pred CEEEEeCCCC--HHHHHHHHH---HHHcCCcEEEEEcCCCHHH
Confidence 8999999953 344443222 2234656777776554443
No 478
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.24 E-value=0.18 Score=52.90 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+..+|+|+|++|+||||+|+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999999874
No 479
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.21 E-value=1.4 Score=46.90 Aligned_cols=118 Identities=11% Similarity=0.079 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCC-------CCcHHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDA-------DDDLNSLQVKL 282 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~~~~~l 282 (1388)
.+++.|.|+.|.||||+.+.+.-.. +..+-.+.+|..-. .. ..+.+|...++...+- ..++.++...+
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~-~la~~G~~v~a~~~-~~---~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALIT-IMAQIGSFVPASSA-TL---SIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHhCCCEEEcCce-EE---eccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 3688999999999999999887631 11111122222100 00 0011111112111110 11233333333
Q ss_pred HhhcCCceEEEEEeCCCCCC----hhh-hhhhcccccCCCCCcEEEEEcCChhHHhhc
Q 045318 283 KDGLSRKKFLLVLDDMWNDN----YGD-WTSLRLPFVAGASGSKIIVTTRNQSVASMM 335 (1388)
Q Consensus 283 ~~~l~~k~~LlVlDdv~~~~----~~~-~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 335 (1388)
+. .+++-|+++|..-... ... ...+...+... .++.+|++|.+.+++...
T Consensus 106 ~~--~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SN--CTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred Hh--CCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHHH
Confidence 32 2578999999973311 111 11233333322 578999999998887654
No 480
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.18 E-value=1.1 Score=53.46 Aligned_cols=42 Identities=21% Similarity=0.064 Sum_probs=29.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD 251 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (1388)
..-.++.|.|.+|+|||||+.++...... .-..++|++..+.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~--~g~kvlYvs~EEs 133 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAK--NQMKVLYVSGEES 133 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHh--cCCcEEEEECcCC
Confidence 34479999999999999999999765221 1135677765443
No 481
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.17 E-value=0.28 Score=54.21 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=35.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF 252 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~ 252 (1388)
+.-+++.|+|.+|+|||++|.++... ...+...++||+..+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCCH
Confidence 45589999999999999999999876 34447889999887763
No 482
>PRK13947 shikimate kinase; Provisional
Probab=91.16 E-value=0.15 Score=52.31 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-|.|+|++|+||||+|+.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999875
No 483
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.16 E-value=0.17 Score=48.03 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHhcCc
Q 045318 213 IPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999999764
No 484
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.16 E-value=0.12 Score=29.28 Aligned_cols=17 Identities=47% Similarity=0.763 Sum_probs=11.7
Q ss_pred cccceeeccCccccccc
Q 045318 588 KHLRHLDLSETLIETLP 604 (1388)
Q Consensus 588 ~~Lr~L~L~~~~i~~lp 604 (1388)
++|+.|+|++|.++++|
T Consensus 1 ~~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTSLP 17 (17)
T ss_dssp TT-SEEEETSS--SSE-
T ss_pred CccCEEECCCCCCCCCc
Confidence 47999999999999887
No 485
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.13 E-value=0.44 Score=54.61 Aligned_cols=102 Identities=24% Similarity=0.291 Sum_probs=57.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccc----cccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMV----ESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLK 283 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 283 (1388)
...+=+-|||..|.|||-|.-..|+...+ +-||. ....++-+.+.........+.. +.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~~----va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLPQ----VA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHHH----HH
Confidence 34567899999999999999999986433 33442 2233333333222222223333 33
Q ss_pred hhcCCceEEEEEeCCCCCChhhhhhhcccccC-CCCCcEEEEEcC
Q 045318 284 DGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVA-GASGSKIIVTTR 327 (1388)
Q Consensus 284 ~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~gs~iivTtR 327 (1388)
+.+.++..||.||.+.-.+..+---+...|.. ...|..+|.||.
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN 166 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSN 166 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCC
Confidence 44556667999998855554443222222221 135665555553
No 486
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.08 E-value=0.7 Score=54.04 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=48.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC-ccCHHHHHHHHHHHhcCCC-------CCCCcHHH---
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD-DFDAIKVTKAILRSICMHT-------DADDDLNS--- 277 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~-------~~~~~~~~--- 277 (1388)
+-..++|.|..|+|||||++.+...... +..+.+-+.+ ...+.++.+.+...-.... .+.....+
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3468899999999999999999875322 2223333333 3344444454443321110 11111111
Q ss_pred --HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 --LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 --~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ +++.+|+++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 112233333 489999999999
No 487
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.06 E-value=0.82 Score=53.43 Aligned_cols=85 Identities=15% Similarity=0.195 Sum_probs=47.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc-CHHHHHHHHHHHhcCC-------CCCCCcHHH----
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF-DAIKVTKAILRSICMH-------TDADDDLNS---- 277 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~---- 277 (1388)
-..++|+|..|+|||||++.+.... ..+.++...+.... ...++...+...-... ..+.....+
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~----~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~ 243 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT----EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAA 243 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999998742 12333333344333 3444444443332211 111111111
Q ss_pred -HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 -LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 -~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ +++++|+++||+
T Consensus 244 ~~a~aiAEyfrd~G~~VLl~~Dsl 267 (451)
T PRK05688 244 MYCTRIAEYFRDKGKNVLLLMDSL 267 (451)
T ss_pred HHHHHHHHHHHHCCCCEEEEecch
Confidence 112233333 589999999999
No 488
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=91.05 E-value=0.68 Score=47.92 Aligned_cols=21 Identities=33% Similarity=0.216 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHhc
Q 045318 212 VIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
++.|.|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999999984
No 489
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=91.05 E-value=0.9 Score=55.40 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|+...+.++.+.+..-. ..-..|.|.|.+|+|||++|+.++..
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~------~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS------RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh------ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 358898888888777664322 12245789999999999999999985
No 490
>PRK05922 type III secretion system ATPase; Validated
Probab=91.02 E-value=0.7 Score=53.75 Aligned_cols=84 Identities=8% Similarity=0.178 Sum_probs=47.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc-CHHHHHHHHHHHhcCCCC-------CCCcHH-----H
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF-DAIKVTKAILRSICMHTD-------ADDDLN-----S 277 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~-------~~~~~~-----~ 277 (1388)
..++|.|..|+|||||.+.+.... ..+..+.+.+.+.. ...+.+.+.......... +..... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 568999999999999999998752 12333444443332 233444444333222111 111111 1
Q ss_pred HHHHHHhhc--CCceEEEEEeCC
Q 045318 278 LQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 278 ~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
....+.+++ +++++|+++||+
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 122233444 489999999999
No 491
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.01 E-value=0.78 Score=53.43 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc-CHHHHHHHHHHHhcCC-------CCCCCcHH-----
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF-DAIKVTKAILRSICMH-------TDADDDLN----- 276 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~----- 276 (1388)
-..++|+|..|+|||||++.+..... .+..+.+.+.+.. .+.++.......-... ..+.....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~~----~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~ 212 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYTE----ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAA 212 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC----CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHH
Confidence 35789999999999999999987522 2333444555443 2344444433321111 01111111
Q ss_pred HHHHHHHhhc--CCceEEEEEeCC
Q 045318 277 SLQVKLKDGL--SRKKFLLVLDDM 298 (1388)
Q Consensus 277 ~~~~~l~~~l--~~k~~LlVlDdv 298 (1388)
.....+.+++ +++++|+++||+
T Consensus 213 ~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 213 FYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1112233333 589999999999
No 492
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=1.2 Score=53.56 Aligned_cols=185 Identities=18% Similarity=0.167 Sum_probs=91.2
Q ss_pred ccCCccccchhhHH---HHHHHHhcCCCC-CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC
Q 045318 178 VNEAEVHGRDDDKK---AIVELLLNDDLN-ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD 253 (1388)
Q Consensus 178 ~~~~~~vGr~~~~~---~l~~~l~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (1388)
+.-..+-|.|+.++ ++++.|..+..- .....-++=|..+|++|.|||.||++++....+-- .+.|.+
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-------f~iSGS-- 217 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-------FSISGS-- 217 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-------eeccch--
Confidence 33456779876665 555566544210 00003346788999999999999999998754432 122221
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC----------hhhhhh----hcccccCCC--
Q 045318 254 AIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN----------YGDWTS----LRLPFVAGA-- 317 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~----l~~~~~~~~-- 317 (1388)
+.++.+-+ -......+.+.+..+.-++.|++|.++... .+++++ +..-....+
T Consensus 218 ------~FVemfVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 218 ------DFVEMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred ------hhhhhhcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 01111111 111223334445555667899999875421 123333 222222222
Q ss_pred CCcEEEEEcCChhHHhh--cCC---CceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH
Q 045318 318 SGSKIIVTTRNQSVASM--MGS---VSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL 387 (1388)
Q Consensus 318 ~gs~iivTtR~~~v~~~--~~~---~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 387 (1388)
.|-.|+..|-.++|... ... ++.+.++.-+-..-.+.++-++-. ......-++. .|++.+-|.--
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~-~~l~~~Vdl~----~iAr~tpGfsG 356 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN-KPLAEDVDLK----KIARGTPGFSG 356 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc-CCCCCcCCHH----HHhhhCCCccc
Confidence 34445555555555532 122 234555555555555666644421 1111222222 26677766543
No 493
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.98 E-value=0.16 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=19.6
Q ss_pred EEEEcCCCChHHHHHHHHhcC
Q 045318 213 IPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~ 233 (1388)
|+|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999975
No 494
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.90 E-value=0.18 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|+|+.|+||||||+.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999975
No 495
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=90.88 E-value=0.78 Score=47.58 Aligned_cols=53 Identities=23% Similarity=0.144 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhcCCCC-----CCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLN-----ADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+-|-.++++++.+...-+-.+ ...-+..+-|..+|++|.|||-+|++|+|.
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 35667778887776654322111 011134466889999999999999999995
No 496
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.88 E-value=0.24 Score=53.40 Aligned_cols=87 Identities=21% Similarity=0.234 Sum_probs=49.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCC---------------CCC-
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMH---------------TDA- 271 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~---------------~~~- 271 (1388)
+.-.++.|.|.+|+|||++|.++..... +..=..++||+..++. .++.+.+- .++.. ...
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~-~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGL-KNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH-HHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhh-hhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 3447999999999999999998775421 2112357788776554 44444322 33210 000
Q ss_pred ----CCcHHHHHHHHHhhcCC-ceEEEEEeCC
Q 045318 272 ----DDDLNSLQVKLKDGLSR-KKFLLVLDDM 298 (1388)
Q Consensus 272 ----~~~~~~~~~~l~~~l~~-k~~LlVlDdv 298 (1388)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 23455555555555443 3357788876
No 497
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.87 E-value=0.18 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999875
No 498
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=0.49 Score=48.62 Aligned_cols=53 Identities=30% Similarity=0.196 Sum_probs=36.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+-|.|-.++++.+...-+-... -.-+..+-|.++|++|.|||-||++|+++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 456788877777776553221100 01134566789999999999999999997
No 499
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.84 E-value=0.19 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999875
No 500
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.78 E-value=0.42 Score=51.22 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=40.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc--cCHHHHHHHHHHHh----cCCC--CCCCcHHHHHHHHH
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD--FDAIKVTKAILRSI----CMHT--DADDDLNSLQVKLK 283 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~--~~~~~~~~~i~~~l----~~~~--~~~~~~~~~~~~l~ 283 (1388)
+|+|.|..|+||||+|+++...-+..+ ..++.++...- ++-...-..+.... .-.. .++.+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g--~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG--IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC--CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 589999999999999998886421111 12233332211 12222222222221 1222 35567777777777
Q ss_pred hhcCCc
Q 045318 284 DGLSRK 289 (1388)
Q Consensus 284 ~~l~~k 289 (1388)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 776654
Done!